BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027501
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NPF4|MD20A_ARATH Mediator of RNA polymerase II transcription subunit 20a
OS=Arabidopsis thaliana GN=MED20A PE=1 SV=1
Length = 219
Score = 345 bits (886), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 160/219 (73%), Positives = 194/219 (88%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M +K VLHWQPN G++V+SQILNE +QCVESINGVKEGRWKATL +YKPML+DQ+ EF
Sbjct: 1 MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQANQLEF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI + + PNKY+F+IRTQRIVLEADS+IQ IMEKLQSYK +VAL F+GFQYQLGD
Sbjct: 61 PRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
F+LRVGKVVPTHSEN+RGIVMEVEYLPISS+EK++++MEEFLEIW EAL+KR+LPG F+
Sbjct: 121 FRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVN 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQS 219
++ NF E+GL D Y+ QHTAV+YA VMA +IA+VQ+V+
Sbjct: 181 IDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQAVRG 219
>sp|Q9M0S0|MD20B_ARATH Mediator of RNA polymerase II transcription subunit 20b
OS=Arabidopsis thaliana GN=MED20B PE=3 SV=1
Length = 219
Score = 313 bits (801), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 141/216 (65%), Positives = 185/216 (85%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M +K +LHWQPN G++ +SQILNEV+Q +ES+NGVKEG WKATL +YKPML+DQ+ +EF
Sbjct: 1 MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQANQAEF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PR+F+GI +PE P+KY+FVIR+QRIV+EADS+IQ IME LQSYK +++ FEG +YQLGD
Sbjct: 61 PREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
F+LRVGKVVPTH+E +RG+VMEVEYLPISS+ ++++MEEFLEIWQEA+SKR+LPG F+
Sbjct: 121 FRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFVN 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQS 216
E NF ++GL D+Y+ QHTAV YA MA L+A++Q+
Sbjct: 181 KELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQA 216
>sp|Q54FL3|MED20_DICDI Putative mediator of RNA polymerase II transcription subunit 20
OS=Dictyostelium discoideum GN=med20 PE=3 SV=1
Length = 195
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIR 81
L E+++ +E + G+K + Y + D S + PR+F ++ E P K F V R
Sbjct: 13 LPEMTKRIEFLGGIKVSTGTINCSLYLERVPDGS--NLIPREFHLLLYDEKPKKCFTVCR 70
Query: 82 TQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVM 141
++E D + +I+EK SYK R +Y+LGDF +RVG +V +RGI++
Sbjct: 71 DT--IVETDREMVSILEKTNSYKKRQTTEALISKYELGDFIIRVGPIV--FRTEIRGILV 126
Query: 142 EVEY----LPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPM-EP-----NFIEY-GL 190
EVEY P++S +++ EF+ G+ P EP +F Y L
Sbjct: 127 EVEYTACSTPVTSPFNCTKLLSEFIN------------GNLGPFPEPIQTSFDFSAYPTL 174
Query: 191 SDHYSSQHTAVQYATVM 207
YS HT+ QY +
Sbjct: 175 PKSYSDLHTSYQYVNLF 191
>sp|Q17LR9|MED20_AEDAE Mediator of RNA polymerase II transcription subunit 20 OS=Aedes
aegypti GN=MED20 PE=3 SV=1
Length = 219
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 82 TQRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRG 138
T++I L D +M ++ + K + + +G +++ GDF +++G V T S+N +G
Sbjct: 77 TKQIPLVTDGLFDLLMTRISPVYTSKKQTKIESKGPRFEFGDFLIKLGSV--TMSQNFKG 134
Query: 139 IVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF 178
+++EVEY P ++M EFL+ + + T+P +F
Sbjct: 135 VLVEVEYRPCLVASSCWELMREFLQGFLGSNVSNTIPAYF 174
>sp|Q7Q6Y4|MED20_ANOGA Mediator of RNA polymerase II transcription subunit 20 OS=Anopheles
gambiae GN=MED20 PE=3 SV=6
Length = 218
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 82 TQRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRG 138
T++I L D +M ++ + K + + +G +++ GDF +++G V T S+N +G
Sbjct: 76 TKQIPLVTDGLFDLLMTRIAPAYTSKKQTKIESKGQRFEFGDFVIKLGSV--TMSQNFKG 133
Query: 139 IVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF 178
+++EVEY P ++M EFL+ + + ++P +F
Sbjct: 134 VLVEVEYRPCLVPGSCWELMREFLQGFLGSNVSNSMPAYF 173
>sp|Q5ZKY9|MED20_CHICK Mediator of RNA polymerase II transcription subunit 20 OS=Gallus
gallus GN=MED20 PE=2 SV=1
Length = 211
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ T+M KL+ + N G +YQ DF ++VG V T + RGI +E
Sbjct: 83 CLIADANFDTLMVKLKGFFQNAKANKIESRGTRYQYCDFLVKVGTV--TMGPSARGISVE 140
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EF++ + G P P+ YS T VQ
Sbjct: 141 VEYCPCVIANDCWNLLMEFMQ---------SFMGSHTPGIPSVFGTKHDSIYSPADTMVQ 191
Query: 203 Y 203
Y
Sbjct: 192 Y 192
>sp|Q6NTV8|MED20_XENLA Mediator of RNA polymerase II transcription subunit 20 OS=Xenopus
laevis GN=med20 PE=2 SV=1
Length = 211
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD + +M KL+ + N G +YQ DF +++G V T +
Sbjct: 76 FALFENGPCLVADLNLDVLMVKLKGFFQNAKANKMETRGTRYQYCDFLVKIGTV--TVGQ 133
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI +EV+Y P + +M EF++ + G P P Y
Sbjct: 134 SGRGITVEVDYCPCAVPGDCWNLMMEFMQSFM---------GSHAPSVPPVFSAKHDPLY 184
Query: 195 SSQHTAVQYATVMAQLIASVQSVQSMR 221
+ T VQY ++ ++ +V MR
Sbjct: 185 TPADTMVQYMELLNKIRKQQVTVAGMR 211
>sp|P91641|MED20_DROME Mediator of RNA polymerase II transcription subunit 20
OS=Drosophila melanogaster GN=MED20 PE=1 SV=2
Length = 252
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ + AD+ +M K+ + K + + G +++ GDF ++
Sbjct: 68 EYPASTFSIIDNGTGKQVAIVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
+G V T E+ +GI++E+EY + +++ E L+ + + P +F P
Sbjct: 128 LGSV--TMMEHFKGILIEIEYKSCVILAYCWEMIREMLQGFLGIAVNKDFPSYFAP 181
>sp|Q5XIE9|MED20_RAT Mediator of RNA polymerase II transcription subunit 20 OS=Rattus
norvegicus GN=Med20 PE=2 SV=1
Length = 212
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPTVFGNRHDAVYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>sp|Q4R4S8|MED20_MACFA Mediator of RNA polymerase II transcription subunit 20 OS=Macaca
fascicularis GN=MED20 PE=2 SV=1
Length = 212
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>sp|Q9H944|MED20_HUMAN Mediator of RNA polymerase II transcription subunit 20 OS=Homo
sapiens GN=MED20 PE=1 SV=1
Length = 212
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>sp|Q9R0X0|MED20_MOUSE Mediator of RNA polymerase II transcription subunit 20 OS=Mus
musculus GN=Med20 PE=1 SV=1
Length = 212
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T +Q
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHAPGAPTVFGNRHDAVYGPADTMIQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>sp|Q61A42|MED20_CAEBR Mediator of RNA polymerase II transcription subunit 20
OS=Caenorhabditis briggsae GN=mdt-20 PE=3 SV=1
Length = 198
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 109 LNFEGFQYQL-GDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQE 167
+ G +Y + D+ +RVG T ++G+V+EVEY P I + R++M EF+ ++
Sbjct: 102 IEINGNEYNIHSDWTVRVGTA--TQGTTVKGVVVEVEYDPTVIIVQCREMMAEFI---KQ 156
Query: 168 ALSK--RTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQL 210
+K T P F E + YS+ T QY + A+L
Sbjct: 157 VFNKYHETQPEIFKITEK-------PERYSTLDTMWQYLQIAAKL 194
>sp|Q9N5A1|MED20_CAEEL Mediator of RNA polymerase II transcription subunit 20
OS=Caenorhabditis elegans GN=mdt-20 PE=3 SV=2
Length = 198
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 20 QILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFV 79
Q V + +ESI G G + +T + P + +S++P + + + +CP F +
Sbjct: 11 QTAKSVERLLESIGGDLHGTFIVDVTPFNP----PTPSSDYPSNVV-MHHSKCPQSTFSI 65
Query: 80 I------RTQRIVLEADSTIQTIMEKLQS---YKMRVALNFEGFQYQL-GDFQLRVGKVV 129
++ + V D I+ KL S + G +Y L D+ +RVG
Sbjct: 66 CPKDTFKKSPKAV--CDRGFDLILSKLSSGLIADNAGKIEIIGNEYSLYKDWMIRVGTA- 122
Query: 130 PTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLE 163
T ++G+V+E+EY P + + + +M EF++
Sbjct: 123 -TQGTTVKGVVVEIEYDPSIIVIQCKDMMIEFVK 155
>sp|Q10317|MED20_SCHPO Mediator of RNA polymerase II transcription subunit 20
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med20 PE=1 SV=2
Length = 193
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEY 145
+++A+ ++ I+ + + + R + EG Y++G F++ + V+ +GI+ V Y
Sbjct: 73 MIDAEPELEDIIVRTKLWNFRQSFTIEGSIYEVGSFKVAIANVL--QKSVWKGILFHVTY 130
Query: 146 LPISSIEKSRQIMEEFL 162
S++ +R I++EF
Sbjct: 131 DGTESVDLARPIIQEFF 147
>sp|A2SEY3|SYM_METPP Methionine--tRNA ligase OS=Methylibium petroleiphilum (strain PM1)
GN=metG PE=3 SV=1
Length = 697
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 30 ESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRIVLEA 89
E +N +KE W AT L D ++ + P + GI +P+ P KYF+V
Sbjct: 220 EVLNKIKE--WFATDEQGHGGLADWDISRDAP--YFGIEIPDAPGKYFYVW--------L 267
Query: 90 DSTIQTIMEKLQSYKMRVALNFEGF 114
D+ I + L++Y + L+FE F
Sbjct: 268 DAPI-GYLASLKNYFDKQGLDFEAF 291
>sp|Q9HDY1|ASE1_SCHPO Anaphase spindle elongation protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ase1 PE=1 SV=1
Length = 731
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 91 STIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLR-VGKVVPTHSENLRGIVMEVEYLPIS 149
STI+ + KL+SY R+ G + L DF+ + V +E+LRG + E E +
Sbjct: 138 STIKEMYHKLESYCNRL-----GSPFVLPDFENSFLSDVSDAFTESLRGRINEAEKEIDA 192
Query: 150 SIEKSRQIMEEFLEIWQE 167
+E EE L +W E
Sbjct: 193 RLEVINSFEEEILGLWSE 210
>sp|B0SQX5|SYM_LEPBP Methionine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / ATCC 23582 / Paris) GN=metG PE=3 SV=1
Length = 681
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 23 NEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFV 79
N++ +E N + EG K ++ L++ ++ + P + G +PE NKYF+V
Sbjct: 197 NQLKNWMEEGNRLNEGAQKKLQEWFTSGLQEWDISRDGP--YFGFAIPEEENKYFYV 251
>sp|B0SHA8|SYM_LEPBA Methionine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=metG PE=3 SV=1
Length = 681
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 23 NEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFV 79
N++ +E N + EG K ++ L++ ++ + P + G +PE NKYF+V
Sbjct: 197 NQLKNWMEEGNRLNEGAQKKLQEWFTSGLQEWDISRDGP--YFGFAIPEEENKYFYV 251
>sp|A8JUV0|SBNO_DROME Protein strawberry notch OS=Drosophila melanogaster GN=sno PE=1
SV=1
Length = 1833
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ +G+ ++E +P+S ++ R+I ++ +E+W EA+ K T + E + +
Sbjct: 908 SFKGVSFKIEEVPLS--KEFRKIYDQSVELWVEAMQKFTEAAELIDAESRMKKTMWGQFW 965
Query: 195 SSQHTAVQYATVMAQLIASV 214
SS +Y + A++ +V
Sbjct: 966 SSHQRFFKYLCIAAKVNHAV 985
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,606,667
Number of Sequences: 539616
Number of extensions: 2592634
Number of successful extensions: 6683
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6675
Number of HSP's gapped (non-prelim): 23
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)