Query 027501
Match_columns 222
No_of_seqs 90 out of 106
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 18:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hzm_A RNA polymerase II media 100.0 1.2E-32 4E-37 234.3 18.9 184 4-208 6-211 (212)
2 3ghx_A Adenylate cyclase CYAB; 93.9 2.1 7.2E-05 34.6 16.8 134 22-165 20-161 (179)
3 1yem_A Hypothetical protein; s 91.5 4.7 0.00016 32.5 16.9 126 22-165 19-155 (179)
4 3n10_A Adenylate cyclase 2; CY 86.7 10 0.00035 29.9 17.7 134 22-165 20-161 (179)
5 2aca_A Putative adenylate cycl 77.1 26 0.0009 28.0 15.6 133 22-165 22-163 (189)
6 2ojl_A Hypothetical protein; B 66.5 6.5 0.00022 29.8 4.1 42 138-179 8-54 (108)
7 2fa8_A Hypothetical protein AT 59.0 11 0.00037 28.4 4.1 41 139-179 8-53 (105)
8 2p0g_A Selenoprotein W-related 56.8 9.9 0.00034 28.6 3.6 29 139-167 4-33 (105)
9 3dex_A SAV_2001; alpha-beta pr 56.0 12 0.0004 28.3 3.9 45 135-179 9-58 (107)
10 2oka_A Hypothetical protein; P 54.3 11 0.00037 28.3 3.4 30 138-167 5-35 (104)
11 2npb_A Selenoprotein W; struct 49.2 13 0.00044 27.4 3.1 30 138-167 2-32 (96)
12 2ljk_A Protein C17ORF37; MIEN1 45.8 7.8 0.00027 29.7 1.4 29 137-165 23-52 (117)
13 2dc4_A PH1012 protein, 165AA l 33.7 1.6E+02 0.0054 22.5 16.3 126 22-165 11-147 (165)
14 3aa0_C 21MER peptide from leuc 28.2 11 0.00036 21.2 -0.3 14 204-217 2-19 (26)
15 3j21_B 50S ribosomal protein L 25.9 13 0.00043 32.0 -0.3 32 114-154 28-59 (239)
16 2een_A Hypothetical protein PH 25.1 2.4E+02 0.0082 21.8 15.3 130 24-165 13-160 (183)
17 3fdr_A Tudor and KH domain-con 20.3 71 0.0024 22.4 2.8 47 91-143 5-52 (94)
No 1
>2hzm_A RNA polymerase II mediator complex subunit 20; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 3rj1_F 2hzs_A
Probab=100.00 E-value=1.2e-32 Score=234.29 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=138.0
Q ss_pred eEEEEecCCCCCCchhhHHHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecC
Q 027501 4 KRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQ 83 (222)
Q Consensus 4 ~~v~~w~~~~~~t~~~q~~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~ 83 (222)
+.|++-+.+ ++|+++.++++|+++||++.|.|++||++||++... .+....|.||++|+|++|.++| ++++.
T Consensus 6 ~avifv~ka-----tpqTIt~f~d~Lsn~la~~~G~ws~d~kty~~~~~s--~p~~~sk~lytl~~S~~p~st~-li~~~ 77 (212)
T 2hzm_A 6 SAVIFVERA-----TPATLTELKDALSNSILSVRDPWSIDFRTYRCSIKN--LPADVSKLMYSITFHHHGRQTV-LIKDN 77 (212)
T ss_dssp EEEEEECSC-----CTTHHHHHHHHHGGGCCEECCCEEEEEEEEEECSCC--C----CCEEEEEEEESSSEEEE-EEETT
T ss_pred eEEEEEecC-----ChhHHHHHHHHHHhhhhhhcCceEEEEEEecCCccc--CCCCCceEEEEEeccCCCceEE-EEeCC
Confidence 367777644 488999999999999999999999999999998652 1112479999999999999999 78871
Q ss_pred -------------------ceeeecCchHHHHH-HHhhh-hhcceeEEEe-eeeEeeeceEEEEEEeeeCCCCcceeEEE
Q 027501 84 -------------------RIVLEADSTIQTIM-EKLQS-YKMRVALNFE-GFQYQLGDFQLRVGKVVPTHSENLRGIVM 141 (222)
Q Consensus 84 -------------------~~~l~aD~~~~~il-~kl~s-y~~r~~~~iE-G~~y~~GDF~VrvG~v~~~~~~~~rGilv 141 (222)
..++.+|.+||.|| .||++ |+.|++.|.| |.+|++|||+||+|+| .+++++||++|
T Consensus 78 sa~v~~~~~~~ip~~~~~~G~~~~~~~~FD~ll~~KL~siwtqrq~iKge~G~~Y~~~df~VR~~Nv--f~~~~fKGlLi 155 (212)
T 2hzm_A 78 SAMVTTAAAADIPPALVFNGSSTGVPESIDTILSSKLSNIWMQRQLIKGDAGETLILDGLTVRLVNL--FSSTGFKGLLI 155 (212)
T ss_dssp EEEEEECCGGGSCHHHHHTTSSCSCCCCHHHHHHHHSTTTEEEEEEEEEEEEEEEEETTEEEEEEEE--EETTEEEEEEE
T ss_pred cceeecccccccchhhhcCCccccCCccHHHHHHHHHHHHHhHhhcccccCCceeEecCEEEEEeeE--EEcCcceeEEE
Confidence 24788999999999 99999 9999999999 9999999999999999 58899999999
Q ss_pred EEEEeccccHHHHHHHHHHHHHHHHhhhccCCCCCCccCCCccccccCCCCCCChhhHHHHHHHHHH
Q 027501 142 EVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMA 208 (222)
Q Consensus 142 EVEY~Pc~~~~~~~~ll~EF~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~Ys~~dT~~QY~~~f~ 208 (222)
||||.|-..-+.-.+-++++++. + .+|..=+ .-+....+..+.| .|.+.||+++++
T Consensus 156 EiEy~~~~~~~~~~~~i~~~l~~---~----~~~~~~~--~~~~l~~~~~~~~--~dL~~Qy~~~L~ 211 (212)
T 2hzm_A 156 ELQADEAGEFETKIAGIEGHLAE---I----RAKEYKT--SSDSLGPDTSNEI--CDLAYQYVRALE 211 (212)
T ss_dssp EEEESCGGGHHHHHHHHHHHHHH---T----TCCCCEE--ECCCSSTTCCCHH--HHHHHHHHHHHT
T ss_pred EEEecCcchhHHHHHHHHHHHHH---c----CCCccee--ehhhcCCcchhHH--HHHHHHHHHHhc
Confidence 99999922222222333333332 2 3444222 1111111222333 489999999863
No 2
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=93.88 E-value=2.1 Score=34.57 Aligned_cols=134 Identities=11% Similarity=0.156 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecCce-----eeecC-chHHH
Q 027501 22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRI-----VLEAD-STIQT 95 (222)
Q Consensus 22 ~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~~~-----~l~aD-~~~~~ 95 (222)
.+.+.++|..+||.....-......|..++...-.. .+....+.....-...++.+.+++. +-++| ..+..
T Consensus 20 ~~~~~~~L~~~g~~~~~~~~~q~d~yfd~p~~~l~~---~~~~lRiR~~~~~~~~~~t~Kgp~~~~~~e~~v~d~~~~~~ 96 (179)
T 3ghx_A 20 LTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAK---QQISMVLREMNPSGIRLWIVKGPGAERCEASNIEDVSKVQS 96 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGG---GTCEEEEEEEETTCCEEEEEECSSSSBEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcCCccccCcceEEEEEEeCCCccHHH---CCcEEEEEEecCCCcEEEEEecCCCCcEEEEEcCCHHHHHH
Confidence 567888999999985333355567777765421000 0111111111100122222333331 11233 35566
Q ss_pred HHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEec--cccHHHHHHHHHHHHHHH
Q 027501 96 IMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLP--ISSIEKSRQIMEEFLEIW 165 (222)
Q Consensus 96 il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~P--c~~~~~~~~ll~EF~~~~ 165 (222)
||..|. |...-.++=.-..|.+|++.|-+=.+- --|-.+|||+.- -..++.+.+.+.++++.+
T Consensus 97 iL~~LG-~~~~~~v~K~R~~y~~~~~~i~LD~v~------glG~f~EIE~~~~d~~~~~~~~~~i~~l~~~L 161 (179)
T 3ghx_A 97 MLATLG-YHPAFTIEKQRSIYFVGKFHITVDHLT------GLGDFAEIAIMTDDATELDKLKAECRDFANTF 161 (179)
T ss_dssp HHHHTT-CEEEEEEEEEEEEEEETTEEEEEEEET------TTEEEEEEEEEESCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHCC-CcEEEEEEEEEEEEEECCEEEEEEccC------CCccEEEEEEEcCChhhHHHHHHHHHHHHHHc
Confidence 666553 554433333377799999999999982 138999999872 345778888888888875
No 3
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=91.47 E-value=4.7 Score=32.51 Aligned_cols=126 Identities=17% Similarity=0.265 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecCc----------eeeecC-
Q 027501 22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQR----------IVLEAD- 90 (222)
Q Consensus 22 ~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~~----------~~l~aD- 90 (222)
.+.+.++|.++||...+... ....|..++... ...|........+++-+..+. .+-++|
T Consensus 19 ~~~~~~~L~~lg~~~~~~~~-Q~d~Yfd~p~~~---------~LRIR~~~~~~~~~lT~K~p~~g~~k~~~E~e~~v~d~ 88 (179)
T 1yem_A 19 LEDFLHTLNTFNPEFVRYEE-QEDVYFEVPRPK---------LLRIRGVHNLKKYYLTFKEILDENNEEFYEVEFEIGDF 88 (179)
T ss_dssp HHHHHHHHHTTCCEEEEEEE-EEEEEECCCTTE---------EEEEEEETTTTEEEEEEEEECSSSSCEEEEEEEEESCH
T ss_pred HHHHHHHHHhcCCccCcceE-EEEEEEcCCCCC---------EEEEEEEcCCCeEEEEEeccCCCCccceeEEEEEeCCH
Confidence 67889999999998777654 788888765321 111110011122222112111 011233
Q ss_pred chHHHHHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEeccccHHHHHHHHHHHHHHH
Q 027501 91 STIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIW 165 (222)
Q Consensus 91 ~~~~~il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc~~~~~~~~ll~EF~~~~ 165 (222)
..+..||..| +|...-.++=.-..|.+|++.|-+=.+. + -|..+|||+.- ..++.+...+.+|++.+
T Consensus 89 ~~~~~iL~~L-G~~~~~~i~K~R~~~~~~~~~i~lD~~~---~---lG~f~EIE~~~-~~~e~~~~~~~~ll~~L 155 (179)
T 1yem_A 89 EKAVEVFKRL-GFKIQATIKKKRWVYKLNGVTLEVNRVE---G---IGDFVDIEVIS-DSPEEAKEKIWEVAKML 155 (179)
T ss_dssp HHHHHHHHHT-TCCEEEEEEEEEEEEEETTEEEEEEEET---T---TEEEEEEEEEC-SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCcEEEEEEEEEEEEEECCEEEEEEecC---C---CCCEEEEEEec-CChHHHHHHHHHHHHHc
Confidence 2345556655 3554433333466688999999998882 2 58899999853 37788888899998875
No 4
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=86.66 E-value=10 Score=29.95 Aligned_cols=134 Identities=11% Similarity=0.145 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecCce-----eeecC-chHHH
Q 027501 22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRI-----VLEAD-STIQT 95 (222)
Q Consensus 22 ~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~~~-----~l~aD-~~~~~ 95 (222)
.+.+.++|.++|+............|..++...-. ..+....+..........+-..+++. +-+.| ..+..
T Consensus 20 ~~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~---~~~~~lRiR~~~~~~~~~lt~kg~~~~~e~e~~v~~~~~~~~ 96 (179)
T 3n10_A 20 LTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLA---KQQISMVLREMNPSGIRLWIVKGPGAERCEASNIEDVSKVQS 96 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTG---GGTCEEEEEEEETTCCEEEEEECSSSSBEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcCCccccceEEEEEEEEeCCChhHH---hCCceEEEEecCCCceEEEEEcCCccccceeeccCCHHHHHH
Confidence 45678889999998766666667788776542100 01222222221111112222233321 11122 23333
Q ss_pred HHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEecc--ccHHHHHHHHHHHHHHH
Q 027501 96 IMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPI--SSIEKSRQIMEEFLEIW 165 (222)
Q Consensus 96 il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc--~~~~~~~~ll~EF~~~~ 165 (222)
++..+ +|...-.++..-..|.++++.|-+=.|. .-|-.+|||..-- ..++.+.+.+.++++.+
T Consensus 97 ~l~~l-g~~~~~~~~k~R~~~~~~~~~v~lD~v~------~lG~f~EiE~e~~~~~~~~~~~~~~~~l~~~L 161 (179)
T 3n10_A 97 MLATL-GYHPAFTIEKQRSIYFVGKFHITVDHLT------GLGDFAEIAIMTDDATELDKLKAECRDFANTF 161 (179)
T ss_dssp HHHHT-TCEEEEEEEEEEEEEEETTEEEEEEEET------TTEEEEEEEEEESCGGGHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCeEEEEEEEEEEEEEECCEEEEEEecc------CCCcEEEEEEEeCCCccHHHHHHHHHHHHHHc
Confidence 44333 2666666666677899999999998883 2478899998632 45677888888888875
No 5
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=77.13 E-value=26 Score=28.00 Aligned_cols=133 Identities=8% Similarity=0.086 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCcE-EEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecCce-----eeecCc-hHH
Q 027501 22 LNEVSQCVESINGV-KEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRI-----VLEADS-TIQ 94 (222)
Q Consensus 22 ~~~L~k~le~lga~-k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~~~-----~l~aD~-~~~ 94 (222)
.+.+.++|..+|+. ..+.. .....|.+++...-. ..+....|............+..+.. +-++|. .+.
T Consensus 22 ~~~~~~~L~~~~~~~~~~~~-~q~d~YfDtp~~~L~---~~~~aLRiR~~~~~~~~~~t~Kgp~~~~~~e~~v~d~~~~~ 97 (189)
T 2aca_A 22 HDAFLNMVKQIEHEVMFENN-QESDWFYDTPQRTLT---QQGKSLVLREIQPAGIKLWIVKGPEADRCEATNITKLDSAQ 97 (189)
T ss_dssp HHHHHHHHHTSCCEEEEEEE-EEEEEEEECTTCHHH---HTTCEEEEEEEETTTEEEEEEECSSTTBEEEEEBSCHHHHH
T ss_pred HHHHHHHHHhcCCcccCcce-EEEEEEEeCCCcchh---hCCeEEEEEEecCCCcEEEEEcCCCcCceEEEecCCHHHHH
Confidence 56788889999994 44444 367777776541100 01112222211111111222233321 112343 455
Q ss_pred HHHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEecc--ccHHHHHHHHHHHHHHH
Q 027501 95 TIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPI--SSIEKSRQIMEEFLEIW 165 (222)
Q Consensus 95 ~il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc--~~~~~~~~ll~EF~~~~ 165 (222)
.+|.++ +|...-.++..-..|.+|++.|-+-.+. .-|-.+|||+.-- ..++.....+.+|++.+
T Consensus 98 ~~L~~l-gl~~~~~~~k~R~~~~~~~~~v~lD~~~------~lg~f~EiE~e~~~~~~~~~~~~~~~~l~~~l 163 (189)
T 2aca_A 98 SMLENM-GYEVIQCSKKIRSIFFVGEFHITLDFLD------GFGHFAEFAIMTDDETALARYRERLVALAQQF 163 (189)
T ss_dssp HHHHHT-TCEEEEEEEEEEEEEEETTEEEEEEEET------TTEEEEEEEEEESCSGGGTTHHHHHHHHHHHT
T ss_pred HHHHHc-CCcEEEEEEEEEEEEEECCEEEEEEccc------CCeeEEEEEEEcCCccchHHHHHHHHHHHHHc
Confidence 566554 3666666666677899999999988882 1377789997633 35777888888888875
No 6
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=66.49 E-value=6.5 Score=29.84 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=30.4
Q ss_pred eEEEEEEEe-ccccHHHHHHHHHHHHHHHHhhh---c-cCCCCCCcc
Q 027501 138 GIVMEVEYL-PISSIEKSRQIMEEFLEIWQEAL---S-KRTLPGHFM 179 (222)
Q Consensus 138 GilvEVEY~-Pc~~~~~~~~ll~EF~~~~~~~~---~-~~~~p~~~~ 179 (222)
+.-|+|||+ +|...-.|..|-+|+++.|.+.+ + .++-.|.|.
T Consensus 8 ~~~V~I~YC~~C~w~lRa~~laqeLl~tF~~~l~eV~L~P~~~G~Fe 54 (108)
T 2ojl_A 8 PPRIAIQYCTQCQWLLRAAWMAQELLSTFGADLGEVALVPGTGGVFR 54 (108)
T ss_dssp CCEEEEEEETTTTCHHHHHHHHHHHHHHHGGGSSEEEEEEECTTCEE
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHHHhcCcccceEEEEeCCCceEE
Confidence 577999999 99999888888888888874321 1 144566663
No 7
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=59.04 E-value=11 Score=28.35 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=29.6
Q ss_pred EEEEEEEe-ccccHHHHHHHHHHHHHHHHhhh---c-cCCCCCCcc
Q 027501 139 IVMEVEYL-PISSIEKSRQIMEEFLEIWQEAL---S-KRTLPGHFM 179 (222)
Q Consensus 139 ilvEVEY~-Pc~~~~~~~~ll~EF~~~~~~~~---~-~~~~p~~~~ 179 (222)
.-|+|||+ +|.....|..|-+|+++.|.+.+ + .++-.|.|.
T Consensus 8 ~~V~I~YC~~C~~~~Ra~~laqeLl~tF~~~l~~V~l~P~~~G~FE 53 (105)
T 2fa8_A 8 PRIAIRYCTQCNWLLRAGWMAQEILQTFASDIGEVSLIPSTGGLFE 53 (105)
T ss_dssp CEEEEEEETTTTCHHHHHHHHHHHHHHHGGGCSEEEEEEECTTCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCcccceEEEEcCCCcEEE
Confidence 45999999 99988888888888888884421 1 144556663
No 8
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=56.84 E-value=9.9 Score=28.58 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.4
Q ss_pred EEEEEEEe-ccccHHHHHHHHHHHHHHHHh
Q 027501 139 IVMEVEYL-PISSIEKSRQIMEEFLEIWQE 167 (222)
Q Consensus 139 ilvEVEY~-Pc~~~~~~~~ll~EF~~~~~~ 167 (222)
.-|+|+|+ +|.....|..|-+|+++.|.+
T Consensus 4 ~~V~I~YC~~C~w~~Ra~~laqeLl~tF~~ 33 (105)
T 2p0g_A 4 AQIEIYYCRQCNWMLRSAWLSQELLHTFSE 33 (105)
T ss_dssp EEEEEEEETTTTCHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHcCc
Confidence 56999999 999998888888888888743
No 9
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=55.99 E-value=12 Score=28.35 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=30.3
Q ss_pred cceeEEEEEEEe-ccccHHHHHHHHHHHHHHHHhhh---c-cCCCCCCcc
Q 027501 135 NLRGIVMEVEYL-PISSIEKSRQIMEEFLEIWQEAL---S-KRTLPGHFM 179 (222)
Q Consensus 135 ~~rGilvEVEY~-Pc~~~~~~~~ll~EF~~~~~~~~---~-~~~~p~~~~ 179 (222)
+....-|+|||+ +|.....|..|-+|+++-|.+.+ + .++..|.|.
T Consensus 9 ~~~~p~V~I~YC~~C~w~lRa~~laqeLl~tF~~~l~eVsL~Pg~gG~Fe 58 (107)
T 3dex_A 9 TPHTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFV 58 (107)
T ss_dssp --CCEEEEEEEETTTTCHHHHHHHHHHHHHHSTTTEEEEEEEEESSSCEE
T ss_pred CCCCCEEEEEECCCCCChHHHHHHHHHHHHhcccccceEEEEeCCCceEE
Confidence 334667999999 99888888888888888774431 1 144556553
No 10
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=54.27 E-value=11 Score=28.33 Aligned_cols=30 Identities=10% Similarity=0.218 Sum_probs=24.8
Q ss_pred eEEEEEEEe-ccccHHHHHHHHHHHHHHHHh
Q 027501 138 GIVMEVEYL-PISSIEKSRQIMEEFLEIWQE 167 (222)
Q Consensus 138 GilvEVEY~-Pc~~~~~~~~ll~EF~~~~~~ 167 (222)
..-|+|+|+ +|.....|..|-+|+++.|.+
T Consensus 5 ~p~V~I~YC~~C~~~~Ra~~laqeLl~tF~~ 35 (104)
T 2oka_A 5 KPEIVITYCTQCQWLLRAAWLAQELLSTFAD 35 (104)
T ss_dssp CCEEEEEEETTTTCHHHHHHHHHHHHHHSTT
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHHHHcCc
Confidence 457999999 999988888888888887743
No 11
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=49.18 E-value=13 Score=27.40 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=25.1
Q ss_pred eEEEEEEEe-ccccHHHHHHHHHHHHHHHHh
Q 027501 138 GIVMEVEYL-PISSIEKSRQIMEEFLEIWQE 167 (222)
Q Consensus 138 GilvEVEY~-Pc~~~~~~~~ll~EF~~~~~~ 167 (222)
.+-|+|||+ +|.....+..|-+|+++.|.+
T Consensus 2 ~~~V~I~YC~~C~y~~ra~~laqeLl~~Fp~ 32 (96)
T 2npb_A 2 ALAVRVVYSGACGYKPKYLQLKEKLEHEFPG 32 (96)
T ss_dssp CEEEEEECCCCSCHHHHHHHHHHHHHHHSBT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCc
Confidence 467999999 888888888888888888754
No 12
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=45.75 E-value=7.8 Score=29.73 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.1
Q ss_pred eeEEEEEEEe-ccccHHHHHHHHHHHHHHH
Q 027501 137 RGIVMEVEYL-PISSIEKSRQIMEEFLEIW 165 (222)
Q Consensus 137 rGilvEVEY~-Pc~~~~~~~~ll~EF~~~~ 165 (222)
.|+-|+|||+ +|.....+..|-+|+++.|
T Consensus 23 ~~vrV~IeYC~~C~~~~ra~~laqeLl~tF 52 (117)
T 2ljk_A 23 SGVRIVVEYCEPCGFEATYLELASAVKEQY 52 (117)
T ss_dssp CSCCCEEEECTTTTCHHHHHHHHHHHTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 6788999999 9999988888888887765
No 13
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=33.71 E-value=1.6e+02 Score=22.46 Aligned_cols=126 Identities=13% Similarity=0.230 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEecCCCCceEEEEEecCc----------eeeecC-
Q 027501 22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQR----------IVLEAD- 90 (222)
Q Consensus 22 ~~~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~se~P~~~f~v~~~~~----------~~l~aD- 90 (222)
.+.+.+++..+|+...+... ....|.+++... ...+..-...++++.-+..+. .+-.+|
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~-q~d~Yfdt~~~~---------~LRiR~~~~~~~~~lT~K~~~~g~~~~~~E~e~~i~~~ 80 (165)
T 2dc4_A 11 FEDIKRKIEGLGAKFFGIEE-QEDVYFELPSPK---------LLRVRKINNTGKSYITYKEILDKRNEEFYELEFEVQDP 80 (165)
T ss_dssp HHHHHHHHHHHTCEEEEEEE-EEEEEECCSTTE---------EEEEEEETTTTEEEEEEEEECSSSSCEEEEEEEEBSCH
T ss_pred HHHHHHHHHhcCCCcCccee-EEEEEEcCCCCC---------EEEEEEEcCCCEEEEEEeCcCCCCceeeeEEEEEcCCH
Confidence 35677778888987666544 556676664311 111110011122222112110 011122
Q ss_pred chHHHHHHHhhhhhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEEEEeccccHHHHHHHHHHHHHHH
Q 027501 91 STIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIW 165 (222)
Q Consensus 91 ~~~~~il~kl~sy~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc~~~~~~~~ll~EF~~~~ 165 (222)
..+..+|..| ++...-.++-.-..|.+|++.|-+=.+. + .|..+|||+. ...++.+...+.+|++.+
T Consensus 81 ~~~~~~L~~l-g~~~~~~~~k~R~~~~~~~~~i~lD~~~---~---~g~~~EiE~~-~~~~~~~~~~~~~l~~~l 147 (165)
T 2dc4_A 81 EGAIELFKRL-GFKVQGVVKKRRWIYKLNNVTFELNRVE---K---AGDFLDIEVI-TSNPEEGKKIIWDVARRL 147 (165)
T ss_dssp HHHHHHHHHT-TCCEEEEEEEEEEEEEETTEEEEEEEET---T---TEEEEEEEEC-CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCcEEEEEEEEEEEEEECCEEEEEEecC---C---CccEEEEEEE-cCCHHHHHHHHHHHHHHc
Confidence 2233444443 2444333444456688899999988872 2 3899999985 337888888888888874
No 14
>3aa0_C 21MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Mus musculus}
Probab=28.15 E-value=11 Score=21.18 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=9.9
Q ss_pred HHHHHHHH----Hhhccc
Q 027501 204 ATVMAQLI----ASVQSV 217 (222)
Q Consensus 204 ~~~f~~~~----~~~~~~ 217 (222)
+|+|.++| |-+||.
T Consensus 2 lehftklrpkr~kkqqps 19 (26)
T 3aa0_C 2 LEHFTKLRPKRNKKQQPT 19 (26)
T ss_pred cchhhhcCcchhhccCCc
Confidence 57888888 566643
No 15
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.91 E-value=13 Score=32.01 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=23.5
Q ss_pred eeEeeeceEEEEEEeeeCCCCcceeEEEEEEEeccccHHHH
Q 027501 114 FQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKS 154 (222)
Q Consensus 114 ~~y~~GDF~VrvG~v~~~~~~~~rGilvEVEY~Pc~~~~~~ 154 (222)
.+|..=||. |-+ ..+|++++|||.|+-+...|
T Consensus 28 ~~yR~iDf~-r~~--------~i~g~V~~IeyDPnRsA~IA 59 (239)
T 3j21_B 28 VKYIPLNYT-QEK--------TLRGVVEEIMHDPGRTAPVA 59 (239)
T ss_dssp CCCCSTTCS-TTC--------CEEEEEEEEEEETTTTEEEE
T ss_pred hhcceeccc-cCC--------CccEEEEEEEECCCCCeeEE
Confidence 468877886 533 55699999999999655433
No 16
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=25.13 E-value=2.4e+02 Score=21.82 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHHHhcCcEEEeeEEEEEEEcccccccccccCCCCceEEEEec--CCCCceEEEEEecCc------------eeee-
Q 027501 24 EVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMV--PECPNKYFFVIRTQR------------IVLE- 88 (222)
Q Consensus 24 ~L~k~le~lga~k~Grw~vd~~~Yr~~~~~~~~~~~~~r~~~~l~~--se~P~~~f~v~~~~~------------~~l~- 88 (222)
.+.++|.. |+...+... ....|..++...-. ..+....+.- ......+.+-+..+. ..+.
T Consensus 13 ~~~~~L~~-~~~~~~~~~-q~d~YfDtp~~~L~---~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~E~e~~v~~ 87 (183)
T 2een_A 13 EIFEKVRE-TFEFMRKEI-HEDIYYQHPCRDFS---KTDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRLEIEVEIQE 87 (183)
T ss_dssp HHHHHHHT-TSEEEEEEE-EEEEEEECSSSCHH---HHTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEEEEEEEECS
T ss_pred HHHHHHHh-cCccCccEE-EEEeEEcCCCccHH---hCCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEEEEEEeecC
Confidence 46777888 887776644 67777776542100 0111222220 011122222112221 1222
Q ss_pred cCchHHHHHHHhhhhhcceeEEEeeeeEeee-ceEEEEEEeeeCCCCcceeEEEEEEEec--cccHHHHHHHHHHHHHHH
Q 027501 89 ADSTIQTIMEKLQSYKMRVALNFEGFQYQLG-DFQLRVGKVVPTHSENLRGIVMEVEYLP--ISSIEKSRQIMEEFLEIW 165 (222)
Q Consensus 89 aD~~~~~il~kl~sy~~r~~~~iEG~~y~~G-DF~VrvG~v~~~~~~~~rGilvEVEY~P--c~~~~~~~~ll~EF~~~~ 165 (222)
....+..+|..+ +|...-.++..-..|.++ ++.|-+-.+. --|-.+|||+.- -..++.....+.+|++.+
T Consensus 88 ~~~~~~~~L~~l-gl~~~~~~~k~R~~~~~~~~~~v~lD~~~------~lg~f~EiE~e~~~~~~~~~~~~~~~~l~~~l 160 (183)
T 2een_A 88 DVDKYFELLDRL-GFKEVLKVVKTREKYYVEKGVTITLDEVE------GLGKFIEIETLVKEKDEIPEAVEKLEKILREL 160 (183)
T ss_dssp CHHHHHHHHHHT-TCEEEEEEEEEEEEEEEETTEEEEEEEET------TTEEEEEEEEECSSGGGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CCeEEEEEEEEEEEEEeCCCEEEEEEeec------CCeeEEEEEEecCCcccHHHHHHHHHHHHHHc
Confidence 222344454443 266555666667789999 9999888872 126677999862 236777788888888763
No 17
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=20.28 E-value=71 Score=22.38 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=28.7
Q ss_pred chHHHHHHHhhh-hhcceeEEEeeeeEeeeceEEEEEEeeeCCCCcceeEEEEE
Q 027501 91 STIQTIMEKLQS-YKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEV 143 (222)
Q Consensus 91 ~~~~~il~kl~s-y~~r~~~~iEG~~y~~GDF~VrvG~v~~~~~~~~rGilvEV 143 (222)
..++.||.+|+. |.+... .....++||.++..-. .-+.=.|+.+++|
T Consensus 5 ~~Le~Lm~~m~~~y~~~~~---~~~~~~~G~~c~a~~~---~d~~wyRA~I~~~ 52 (94)
T 3fdr_A 5 LQLDKLVNEMTQHYENSVP---EDLTVHVGDIVAAPLP---TNGSWYRARVLGT 52 (94)
T ss_dssp CHHHHHHHHHHHHHTTCCC---CCCCCCTTCEEEEEET---TTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCC---CCCCCCCCCEEEEEEC---CCCeEEEEEEEEE
Confidence 468999999999 655432 2234567777643321 1345567777766
Done!