BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027502
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|D Chain D, Complex Strcuture Of Tarocystatin And Papain
Length = 91
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 73/85 (85%)
Query: 33 GGVYDYGGNQNSAEIEGLARFAVQEHNKKENALLQFARVLKAKEQVVAGKLYYLTLEVID 92
GG+ D G QNSAE+E LARFAV EHNKKENALLQF+R++KAK+QVV+G +++LT+EVI+
Sbjct: 4 GGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEVIE 63
Query: 93 AGKNKIYEAKIWVKPWINFKQLQEF 117
GK K+YEAK+WV+ W+N K+L EF
Sbjct: 64 GGKKKVYEAKVWVQAWLNSKKLHEF 88
>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin
Length = 135
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
Query: 33 GGVYDYG-GNQNSAEIEGLARFAVQEHNKKENALLQFARVLKAKEQVVAGKLYYLTLEVI 91
GG+YD N+N + E LARFAV+E+N K NALL+F RV+KAKEQVV+G ++YLT+EV
Sbjct: 44 GGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVN 103
Query: 92 DAGKNKIYEAKIWVKPWINFKQLQEFKH 119
DAGK K+YEAK+W + W+NF+QLQEF +
Sbjct: 104 DAGKKKLYEAKVWEQVWMNFRQLQEFTY 131
>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine
Proteinase Inhibitor Of The Rice, Oryza Sativa L.
Japonica
Length = 102
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Query: 33 GGVYDYGGNQNSAEIEGLARFAVQEHNKKENALLQFARVLKAKEQVVAGKLYYLTLEVID 92
GGV G N+N + LARFAV EHNKK N+LL+F +++ K+QVVAG LYY T+EV +
Sbjct: 10 GGVEPVG-NENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKE 68
Query: 93 AGKNKIYEAKIWVKPWINFKQLQEFKHAE 121
K+YEAK+W KPW++FK+LQEFK +
Sbjct: 69 GDAKKLYEAKVWEKPWMDFKELQEFKPVD 97
>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin
pdb|2W9P|B Chain B, Crystal Structure Of Potato Multicystatin
pdb|2W9P|C Chain C, Crystal Structure Of Potato Multicystatin
pdb|2W9P|D Chain D, Crystal Structure Of Potato Multicystatin
pdb|2W9P|E Chain E, Crystal Structure Of Potato Multicystatin
pdb|2W9P|F Chain F, Crystal Structure Of Potato Multicystatin
pdb|2W9P|G Chain G, Crystal Structure Of Potato Multicystatin
pdb|2W9P|H Chain H, Crystal Structure Of Potato Multicystatin
pdb|2W9P|I Chain I, Crystal Structure Of Potato Multicystatin
pdb|2W9P|J Chain J, Crystal Structure Of Potato Multicystatin
pdb|2W9P|K Chain K, Crystal Structure Of Potato Multicystatin
pdb|2W9P|L Chain L, Crystal Structure Of Potato Multicystatin
pdb|2W9P|M Chain M, Crystal Structure Of Potato Multicystatin
pdb|2W9P|N Chain N, Crystal Structure Of Potato Multicystatin
pdb|2W9Q|A Chain A, Crystal Structure Of Potato Multicystatin-P212121
Length = 87
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 41 NQNSAEIEGLARFAVQEHNKKENALLQFARVLKAKEQVVAGKLYYLTLEVI-DAGKNKIY 99
N N+ + + LARFA+Q++NKK+NA L+F L KEQVVAG +YY+TL DAGK KIY
Sbjct: 7 NPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIY 66
Query: 100 EAKIWVKPWINFKQLQEFK 118
+AKIWVK W +FK++ EFK
Sbjct: 67 KAKIWVKEWEDFKKVVEFK 85
>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|C Chain C, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|D Chain D, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL6|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group P6422
pdb|3UL6|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group P6422
Length = 139
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 40 GNQNSAEIEGLARFAVQEHNKKENALLQFARVLKAKEQVVAGKLYYLTLEVIDAGKN-KI 98
G++N E LARFAV EHN K NA+L+F R++K + QVVAG +++ T++V +AG K+
Sbjct: 55 GHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKEAGGGKKL 114
Query: 99 YEAKIWVKPWINFKQLQEFK 118
YEAK+W K W NFKQLQ F+
Sbjct: 115 YEAKVWEKVWENFKQLQSFQ 134
>pdb|3PS8|A Chain A, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|A Chain A, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|B Chain B, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|C Chain C, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|D Chain D, Crystal Structure Of L68v Mutant Of Human Cystatin C
Length = 120
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 39 GGNQNSAEIEGLAR---FAVQEHNKKENALL--QFARVLKAKEQVVAGKLYYLTLEV 90
G S E EG+ R FAV E+NK N + + +V++A++Q+VAG Y+L +EV
Sbjct: 12 GPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVEV 68
>pdb|3GAX|A Chain A, Crystal Structure Of Monomeric Human Cystatin C
Stabilized A Aggregation
pdb|3GAX|B Chain B, Crystal Structure Of Monomeric Human Cystatin C
Stabilized A Aggregation
Length = 120
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 39 GGNQNSAEIEGLAR---FAVQEHNKKENALL--QFARVLKAKEQVVAGKLYYLTLEVI 91
G S E EG+ R FAV E+NK N + + +V++A++Q+VAG Y+L +E+
Sbjct: 12 GPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAGVNYFLDVELC 69
>pdb|1G96|A Chain A, Human Cystatin C; Dimeric Form With 3d Domain Swapping
pdb|1TIJ|A Chain A, 3d Domain-Swapped Human Cystatin C With Amyloid-Like
Intermolecular Beta-Sheets
pdb|1TIJ|B Chain B, 3d Domain-Swapped Human Cystatin C With Amyloid-Like
Intermolecular Beta-Sheets
Length = 120
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 39 GGNQNSAEIEGLAR---FAVQEHNKKENALL--QFARVLKAKEQVVAGKLYYLTLEV 90
G S E EG+ R FAV E+NK N + + +V++A++Q+VAG Y+L +E+
Sbjct: 12 GPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVEL 68
>pdb|1R4C|A Chain A, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|B Chain B, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|C Chain C, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|D Chain D, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|E Chain E, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|F Chain F, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|G Chain G, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|H Chain H, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
Length = 110
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 39 GGNQNSAEIEGLAR---FAVQEHNKKENALL--QFARVLKAKEQVVAGKLYYLTLEV 90
G S E EG+ R FAV E+NK N + + +V++A++Q+VAG Y+L +E+
Sbjct: 2 GPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVEL 58
>pdb|3LI7|A Chain A, Crystal Structure Of Sialostatin L
pdb|3LI7|B Chain B, Crystal Structure Of Sialostatin L
pdb|3LI7|C Chain C, Crystal Structure Of Sialostatin L
pdb|3LI7|D Chain D, Crystal Structure Of Sialostatin L
Length = 115
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 33 GGVYDYGGNQNSAEIEGLARFAVQEHNKKENALLQF---ARVLKAKEQVVAGKLYYLTLE 89
GG + +Q + E LA +A + ++ F A V+K + QVVAG Y LTL+
Sbjct: 6 GGYSERANHQANPEFLNLAHYATSTWSAQQPGKTHFDTVAEVVKVETQVVAGTNYRLTLK 65
Query: 90 VIDA 93
V ++
Sbjct: 66 VAES 69
>pdb|1A90|A Chain A, Recombinant Mutant Chicken Egg White Cystatin, Nmr, 31
Structures
Length = 108
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 48 EGLAR---FAVQEHNKKENALL--QFARVLKAKEQVVAGKLYYLTLEV 90
EGL R FA+ E+N+ N + RV+ AK Q+V+G Y L +E+
Sbjct: 11 EGLQRALQFAIAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEI 58
>pdb|1CEW|I Chain I, The 2.0 Angstroms X-Ray Crystal Structure Of Chicken Egg
White Cystatin And Its Possible Mode Of Interaction
With Cysteine Proteinases
pdb|1A67|A Chain A, Chicken Egg White Cystatin Wildtype, Nmr, 16 Structures
Length = 108
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 48 EGLAR---FAVQEHNKKENALL--QFARVLKAKEQVVAGKLYYLTLEV 90
EGL R FA+ E+N+ N + RV+ AK Q+V+G Y L +E+
Sbjct: 11 EGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEI 58
>pdb|1YVB|I Chain I, The Plasmodium Falciparum Cysteine Protease Falcipain-2
Length = 111
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 48 EGLAR---FAVQEHNKKENALL--QFARVLKAKEQVVAGKLYYLTLEV 90
EGL R FA+ E+N+ N + RV+ AK Q+V+G Y L +E+
Sbjct: 14 EGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEI 61
>pdb|3LH4|A Chain A, Crystal Structure Of Sialostatin L2
Length = 115
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 34 GVYDYGGNQNSAEIEGLARFAVQEHNKKENALLQF---ARVLKAKEQVVAGKLYYLTLEV 90
G Y NQ+ E LA +A + ++ F VLK + Q VAG Y LTL+V
Sbjct: 7 GGYRERSNQDDPEYLELAHYATSTWSAQQPGKTHFDTVVEVLKVETQTVAGTNYRLTLKV 66
Query: 91 IDA 93
++
Sbjct: 67 AES 69
>pdb|3K1Q|D Chain D, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|E Chain E, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|U Chain U, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|V Chain V, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 412
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 119 HAEHGPFSALSDLNLKRGCHGQEW------LAVSTNDLEVKNAANHAVKSMQRKSNSLF 171
+ + P L+DL GC+ + W LA+ST L V +A +V S N+L
Sbjct: 14 YGQPAPLFDLNDLQELAGCYARPWTSRFSHLAISTGSLPVWSARYPSVASRNIVVNTLL 72
>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|B Chain B, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|C Chain C, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|D Chain D, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|E Chain E, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|F Chain F, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|G Chain G, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|H Chain H, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|I Chain I, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|J Chain J, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|K Chain K, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|L Chain L, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|M Chain M, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|N Chain N, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|O Chain O, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|P Chain P, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
Length = 370
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 48 EGLARFAVQEHNKKENALLQFARVLKAKEQVVAGKLYYLTLEVIDAGKNKIYEAKIWVKP 107
E R V + N++ NA LQ V KA EQ G++Y +T+ V + Y+A W
Sbjct: 141 EAGVRLFVVKQNRR-NATLQL--VKKAIEQGRFGRIYMVTVNVFWTRPQEYYDAARWRGK 197
Query: 108 W 108
W
Sbjct: 198 W 198
>pdb|2CH9|A Chain A, Crystal Structure Of Dimeric Human Cystatin F
Length = 131
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 144 AVSTNDLEVKNAANHAVKSMQRKSNSLFLYELLEILQAKAKVIEDYAKFELHLKLRRGS 202
+ TND V AA ++V+ +N +FL++ I +A ++++ K+ L +++ R +
Sbjct: 22 TIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGL-KYMLEVEIGRTT 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,586,088
Number of Sequences: 62578
Number of extensions: 254843
Number of successful extensions: 513
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 30
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)