Query 027502
Match_columns 222
No_of_seqs 196 out of 1134
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07430 PP1: Phloem filament 99.9 1.8E-21 4E-26 160.1 16.1 179 31-218 6-193 (202)
2 cd00042 CY Substituted updates 99.9 5.2E-21 1.1E-25 144.8 11.8 85 33-119 1-105 (105)
3 smart00043 CY Cystatin-like do 99.8 4.1E-21 9E-26 145.9 8.9 88 31-120 2-107 (107)
4 PF00031 Cystatin: Cystatin do 99.8 3.1E-18 6.8E-23 126.9 11.6 74 33-108 1-94 (94)
5 PF00031 Cystatin: Cystatin do 99.7 2.7E-16 5.9E-21 116.5 9.5 61 140-201 1-61 (94)
6 cd00042 CY Substituted updates 99.7 4.9E-16 1.1E-20 117.5 10.1 75 140-216 1-94 (105)
7 smart00043 CY Cystatin-like do 99.6 7.5E-16 1.6E-20 116.9 7.7 78 138-216 2-95 (107)
8 PF07430 PP1: Phloem filament 99.4 7.1E-13 1.5E-17 109.6 8.4 85 29-115 111-199 (202)
9 TIGR01638 Atha_cystat_rel Arab 98.3 1.8E-06 3.9E-11 64.1 6.9 64 42-105 10-76 (92)
10 TIGR01638 Atha_cystat_rel Arab 98.0 3.1E-05 6.7E-10 57.6 6.7 66 144-212 7-75 (92)
11 PF06907 Latexin: Latexin; In 96.4 0.55 1.2E-05 40.2 19.5 167 42-210 4-194 (220)
12 TIGR01572 A_thl_para_3677 Arab 93.0 6 0.00013 34.9 15.6 73 47-120 42-117 (265)
13 PF00666 Cathelicidins: Cathel 89.6 0.88 1.9E-05 32.0 4.7 52 152-203 4-57 (67)
14 PF06907 Latexin: Latexin; In 83.1 15 0.00033 31.6 9.7 67 145-212 2-74 (220)
15 TIGR01572 A_thl_para_3677 Arab 72.8 8.1 0.00018 34.1 5.2 67 152-221 42-111 (265)
16 PF01789 PsbP: PsbP; InterPro 70.3 29 0.00062 28.3 7.8 58 154-214 84-142 (175)
17 PRK13859 type IV secretion sys 56.7 9.9 0.00022 25.3 2.1 29 11-39 4-40 (55)
18 PF05679 CHGN: Chondroitin N-a 53.2 43 0.00093 32.2 6.7 49 44-92 160-210 (499)
19 PF00666 Cathelicidins: Cathel 53.0 17 0.00037 25.5 2.9 46 47-93 4-53 (67)
20 PLN00042 photosystem II oxygen 52.2 40 0.00086 29.8 5.7 24 176-199 185-208 (260)
21 PLN00067 PsbP domain-containin 48.8 39 0.00084 29.9 5.1 28 173-200 190-217 (263)
22 PF15240 Pro-rich: Proline-ric 43.5 16 0.00034 30.5 1.8 16 9-24 3-18 (179)
23 CHL00132 psaF photosystem I su 37.7 71 0.0015 26.7 4.7 27 31-60 25-51 (185)
24 PF08294 TIM21: TIM21; InterP 36.3 40 0.00087 27.0 3.1 73 147-219 51-124 (145)
25 PLN00059 PsbP domain-containin 36.2 2.2E+02 0.0047 25.5 7.8 44 154-200 172-221 (286)
26 COG3360 Uncharacterized conser 32.9 1.8E+02 0.0039 20.6 6.4 45 46-91 18-64 (71)
27 PTZ00444 hypothetical protein; 32.2 38 0.00083 28.3 2.4 23 1-23 1-23 (184)
28 PF05679 CHGN: Chondroitin N-a 32.0 1.8E+02 0.0039 27.9 7.3 48 150-200 161-210 (499)
29 PRK10081 entericidin B membran 31.7 32 0.00069 22.6 1.5 22 1-22 1-22 (48)
30 COG3360 Uncharacterized conser 31.2 1.8E+02 0.0038 20.6 5.1 45 152-199 19-64 (71)
31 smart00773 WGR Proposed nuclei 31.1 1E+02 0.0022 21.8 4.3 30 192-221 6-37 (84)
32 TIGR02105 III_needle type III 28.6 66 0.0014 22.8 2.8 23 145-167 29-51 (72)
33 PF12276 DUF3617: Protein of u 28.6 57 0.0012 25.8 2.8 35 1-38 1-35 (162)
34 PF12274 DUF3615: Protein of u 26.9 2.5E+02 0.0054 20.4 6.2 50 163-212 1-58 (96)
35 PRK15344 type III secretion sy 26.3 83 0.0018 22.3 2.9 22 145-166 28-49 (71)
36 KOG4306 Glycosylphosphatidylin 26.1 42 0.00091 30.4 1.7 27 179-205 70-96 (306)
37 PF02995 DUF229: Protein of un 25.3 74 0.0016 30.5 3.4 32 138-169 450-481 (497)
38 PRK13883 conjugal transfer pro 24.7 1.5E+02 0.0034 24.0 4.6 20 42-61 28-47 (151)
39 PF10828 DUF2570: Protein of u 24.7 65 0.0014 24.3 2.4 22 1-22 1-22 (110)
40 PF09049 SNN_transmemb: Stanni 24.6 33 0.00072 20.2 0.5 17 5-21 11-27 (33)
41 PF07311 Dodecin: Dodecin; In 24.5 2.5E+02 0.0054 19.5 7.5 47 44-91 13-61 (66)
42 PF15418 DUF4625: Domain of un 24.1 1.5E+02 0.0033 23.2 4.4 35 184-219 31-65 (132)
43 PF01456 Mucin: Mucin-like gly 24.0 40 0.00087 26.3 1.1 10 12-21 6-15 (143)
44 smart00557 IG_FLMN Filamin-typ 23.8 1.2E+02 0.0025 21.8 3.5 28 193-221 33-60 (93)
45 PF05399 EVI2A: Ectropic viral 22.9 65 0.0014 27.7 2.2 17 5-21 135-151 (227)
46 PLN03207 stomagen; Provisional 22.5 92 0.002 23.6 2.7 13 5-17 11-23 (113)
47 PF13956 Ibs_toxin: Toxin Ibs, 22.4 40 0.00086 17.6 0.5 16 1-16 1-16 (19)
48 MTH00261 ATP8 ATP synthase F0 22.2 79 0.0017 21.5 2.1 18 2-19 11-28 (68)
49 PF13721 SecD-TM1: SecD export 20.5 89 0.0019 23.4 2.3 14 1-14 1-14 (101)
50 PF12984 DUF3868: Domain of un 20.2 62 0.0013 24.8 1.4 15 1-15 1-15 (115)
No 1
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=99.88 E-value=1.8e-21 Score=160.14 Aligned_cols=179 Identities=16% Similarity=0.201 Sum_probs=148.1
Q ss_pred CCceeeeCCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEE--EEeeccEEEEEEEEEEe-CCcceEEEEEEEEec
Q 027502 31 RPGGVYDYGGNQNSAEIEGLARFAVQEHNKKENALLQFARVLKAK--EQVVAGKLYYLTLEVID-AGKNKIYEAKIWVKP 107 (222)
Q Consensus 31 l~GG~~~i~~~~~d~~v~~~a~fAv~~~N~~sn~~~~~~kV~~a~--~QVVaG~nY~l~v~v~~-~~~~~~c~~~V~~~P 107 (222)
..|||.+++ |+.+|.+|++++||+.+++.+-++.++|..|.+.+ .|.+.++.|+|.+++.| -++...|++.|+++-
T Consensus 6 ~~~~w~~ip-~v~~~~~q~v~~~~veq~k~~~~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d~l~r~l~~e~ii~e~~ 84 (202)
T PF07430_consen 6 FSPKWIKIP-DVKEPCLQEVAKFAVEQFKIQYGDSLKFRSVVEGWYFELCPNSLKYRLHVKAIDFLGRSLKYEAIIIEEK 84 (202)
T ss_pred cCcccccCC-cccchHHHHHHHHHHHHHhhhcccceeeeeeeeceeecccccceeEEEeehhhhhhccccceeeeeeehh
Confidence 479999997 58999999999999999999998889999999998 88899999999999988 588899999999995
Q ss_pred --CCCceeeEEEeeCCCCCCcccccccccccCCCCcceec-cCCCHHHHHHHHHHHHHHHhhccCccceeEEEEEEeeee
Q 027502 108 --WINFKQLQEFKHAEHGPFSALSDLNLKRGCHGQEWLAV-STNDLEVKNAANHAVKSMQRKSNSLFLYELLEILQAKAK 184 (222)
Q Consensus 108 --W~~~~~l~s~~c~~~~~~~~~~~~~~k~~~~~gg~~~i-~~~d~~v~e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~Q 184 (222)
|++.++|.|+--.-..-....+ ...+....|.++ |+++|.||+++.|||.||| ..++. .+|.+|.++..|
T Consensus 85 ~~~~~~~kl~s~l~~v~~~~~v~p----v~~p~~~~Wi~I~nin~p~VQeLgkFAV~EhN-K~gd~--LkF~KV~eGw~q 157 (202)
T PF07430_consen 85 PQLTRIRKLASILAIVSGGAVVYP----VATPQSKKWIPIPNINNPFVQELGKFAVIEHN-KAGDK--LKFEKVYEGWYQ 157 (202)
T ss_pred hhhhhhhhhheeeEEEeeceeecc----ccCcccCCCEECCCCCcHHHHHHHHHHHHHHh-hcCCc--eEEEEEeeEEEE
Confidence 9999998887543211000000 001123569888 4999999999999999999 55665 499999999999
Q ss_pred eec--ceeEEEEEEEEccC-CccceEEEEEEeCCCCc
Q 027502 185 VIE--DYAKFELHLKLRRG-SEEEKHWVEIIKNSEGK 218 (222)
Q Consensus 185 VVa--G~~yy~l~l~~~~g-~~~~~~~~~v~~~~~~~ 218 (222)
=++ |++ |+|+|.+++| ++...|+|.|++++--|
T Consensus 158 ~l~~d~ik-YrLhI~AkDg~G~~~~YeAvV~~k~~~s 193 (202)
T PF07430_consen 158 DLGNDGIK-YRLHIVAKDGLGRLGNYEAVVWEKQFLS 193 (202)
T ss_pred eccCCCce-EEEEEEeecCCCCcCceEEEEEEeccCc
Confidence 775 688 6899999999 67889999999987544
No 2
>cd00042 CY Substituted updates: Jan 30, 2002
Probab=99.86 E-value=5.2e-21 Score=144.82 Aligned_cols=85 Identities=54% Similarity=0.822 Sum_probs=80.5
Q ss_pred ceeeeCCCCCCCHHHHHHHHHHHHHHHhhcCCc-eeEEEEEEEEEEeeccEEEEEEEEEEeC------------------
Q 027502 33 GGVYDYGGNQNSAEIEGLARFAVQEHNKKENAL-LQFARVLKAKEQVVAGKLYYLTLEVIDA------------------ 93 (222)
Q Consensus 33 GG~~~i~~~~~d~~v~~~a~fAv~~~N~~sn~~-~~~~kV~~a~~QVVaG~nY~l~v~v~~~------------------ 93 (222)
|||.+++ .+||+++++++||+.+||+.+++. |.+.+|++|++|||+|++|+|++++.++
T Consensus 1 gg~~~~~--~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~i~~~~~QvvaG~~y~i~~~~~~t~C~k~~~~~~~~~c~~~~ 78 (105)
T cd00042 1 GGPSDIP--ANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGDTNCKKSSVPLDCPDCKLLE 78 (105)
T ss_pred CCCccCC--CCCHHHHHHHHHHHHHHHhhcCccceeEEEEEEEEEEEEeeeEEEEEEEEecccccccCcccccccccccc
Confidence 8999887 799999999999999999999998 8889999999999999999999999975
Q ss_pred -CcceEEEEEEEEecCCCceeeEEEee
Q 027502 94 -GKNKIYEAKIWVKPWINFKQLQEFKH 119 (222)
Q Consensus 94 -~~~~~c~~~V~~~PW~~~~~l~s~~c 119 (222)
+....|++.||.+||.+..++++++|
T Consensus 79 ~~~~~~C~~~V~~~pw~~~~~l~~~~C 105 (105)
T cd00042 79 EGKKKFCTAKVWEKPWENFKELLSFKC 105 (105)
T ss_pred cCCCEEEEEEEEecCCCCceeeeeccC
Confidence 57899999999999999999999988
No 3
>smart00043 CY Cystatin-like domain. Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.
Probab=99.85 E-value=4.1e-21 Score=145.93 Aligned_cols=88 Identities=44% Similarity=0.622 Sum_probs=80.5
Q ss_pred CCceeeeCCCCCCCHHHHHHHHHHHHHHHhhcCCcee--EEEEEEEEEEeeccEEEEEEEEEEeCCcc------------
Q 027502 31 RPGGVYDYGGNQNSAEIEGLARFAVQEHNKKENALLQ--FARVLKAKEQVVAGKLYYLTLEVIDAGKN------------ 96 (222)
Q Consensus 31 l~GG~~~i~~~~~d~~v~~~a~fAv~~~N~~sn~~~~--~~kV~~a~~QVVaG~nY~l~v~v~~~~~~------------ 96 (222)
++|||.+++ .+||+++++|+||+.+||+++++.|. +.+|++|++|||+|++|+|++++.++.-.
T Consensus 2 ~~Gg~~~~~--~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t~C~k~~~~~~~C~~~ 79 (107)
T smart00043 2 CLGGPSDVP--PNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVEVGETNCKKLSVDLENCPFL 79 (107)
T ss_pred CCCCCccCC--CCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecceEEEEEEEEEeceeccCCcccccCCCC
Confidence 689999997 68999999999999999999998876 79999999999999999999999985322
Q ss_pred ----eEEEEEEEEecCCCceeeEEEeeC
Q 027502 97 ----KIYEAKIWVKPWINFKQLQEFKHA 120 (222)
Q Consensus 97 ----~~c~~~V~~~PW~~~~~l~s~~c~ 120 (222)
..|.++||.+||.++.++++++|.
T Consensus 80 ~~~~~~C~~~V~~~pw~~~~~~~~~~C~ 107 (107)
T smart00043 80 DQGEKFCTAKVWEKPWENKIKLVEFKCT 107 (107)
T ss_pred CCCccEEEEEEEecCCCCccCccceecC
Confidence 489999999999999999999984
No 4
>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....
Probab=99.78 E-value=3.1e-18 Score=126.94 Aligned_cols=74 Identities=32% Similarity=0.614 Sum_probs=68.3
Q ss_pred ceeeeCCCCCCCHHHHHHHHHHHHHHHhhcCCc--eeEEEEEEEEEEeeccEEEEEEEEEEeC-----------------
Q 027502 33 GGVYDYGGNQNSAEIEGLARFAVQEHNKKENAL--LQFARVLKAKEQVVAGKLYYLTLEVIDA----------------- 93 (222)
Q Consensus 33 GG~~~i~~~~~d~~v~~~a~fAv~~~N~~sn~~--~~~~kV~~a~~QVVaG~nY~l~v~v~~~----------------- 93 (222)
|||.+++ .+||+++++|+||+.+||+++++. |.+.+|++|++|||+|++|+|++++.++
T Consensus 1 Gg~~~~~--~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t~C~k~~~~~~~C~~~~~ 78 (94)
T PF00031_consen 1 GGPSPVD--PNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAGINYYIEFEVGETNCKKSSKDFENCPFQEE 78 (94)
T ss_dssp SSEEEEC--TTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETCEEEEEECEBEST
T ss_pred CCCccCC--CCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCCceEEEEEEEEcccccccccccccCCcccc
Confidence 8999998 599999999999999999999766 6789999999999999999999999873
Q ss_pred -CcceEEEEEEEEecC
Q 027502 94 -GKNKIYEAKIWVKPW 108 (222)
Q Consensus 94 -~~~~~c~~~V~~~PW 108 (222)
.....|.++||.+||
T Consensus 79 ~~~~~~C~~~v~~~pW 94 (94)
T PF00031_consen 79 QPWTKFCKFTVWERPW 94 (94)
T ss_dssp TSSEEEEEEEEEEECG
T ss_pred CCceeeEEEEEEECCC
Confidence 457899999999999
No 5
>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....
Probab=99.68 E-value=2.7e-16 Score=116.51 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=58.6
Q ss_pred CcceeccCCCHHHHHHHHHHHHHHHhhccCccceeEEEEEEeeeeeecceeEEEEEEEEccC
Q 027502 140 QEWLAVSTNDLEVKNAANHAVKSMQRKSNSLFLYELLEILQAKAKVIEDYAKFELHLKLRRG 201 (222)
Q Consensus 140 gg~~~i~~~d~~v~e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~QVVaG~~yy~l~l~~~~g 201 (222)
|||.++++|||+++++|+||+.+||+++|+.+.|++.+|++|++|||+|++| +|++++.++
T Consensus 1 Gg~~~~~~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G~~Y-~i~~~~~~t 61 (94)
T PF00031_consen 1 GGPSPVDPNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAGINY-YIEFEVGET 61 (94)
T ss_dssp SSEEEECTTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSSEEE-EEEEEEEEE
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCCceE-EEEEEEEcc
Confidence 7999999999999999999999999999999999999999999999999995 699999885
No 6
>cd00042 CY Substituted updates: Jan 30, 2002
Probab=99.67 E-value=4.9e-16 Score=117.47 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=68.4
Q ss_pred CcceeccCCCHHHHHHHHHHHHHHHhhccCccceeEEEEEEeeeeeecceeEEEEEEEEccCC-----------------
Q 027502 140 QEWLAVSTNDLEVKNAANHAVKSMQRKSNSLFLYELLEILQAKAKVIEDYAKFELHLKLRRGS----------------- 202 (222)
Q Consensus 140 gg~~~i~~~d~~v~e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~QVVaG~~yy~l~l~~~~g~----------------- 202 (222)
|||.+++++||+++++++||+++||+.+|+.| |++.+|++|++|||+|++| .|+++++++.
T Consensus 1 gg~~~~~~~d~~~~~~~~~a~~~~N~~~~~~~-~~~~~i~~~~~QvvaG~~y-~i~~~~~~t~C~k~~~~~~~~~c~~~~ 78 (105)
T cd00042 1 GGPSDIPANDPEVQELADFAVAEYNKKSNDKY-LEFFKVLSAKSQVVAGTNY-YITVEAGDTNCKKSSVPLDCPDCKLLE 78 (105)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHhhcCccc-eeEEEEEEEEEEEEeeeEE-EEEEEEecccccccCcccccccccccc
Confidence 78999999999999999999999999999999 9999999999999999995 7999999752
Q ss_pred --ccceEEEEEEeCCC
Q 027502 203 --EEEKHWVEIIKNSE 216 (222)
Q Consensus 203 --~~~~~~~~v~~~~~ 216 (222)
....+.+.||+.|-
T Consensus 79 ~~~~~~C~~~V~~~pw 94 (105)
T cd00042 79 EGKKKFCTAKVWEKPW 94 (105)
T ss_pred cCCCEEEEEEEEecCC
Confidence 35578999999885
No 7
>smart00043 CY Cystatin-like domain. Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.
Probab=99.63 E-value=7.5e-16 Score=116.92 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=69.1
Q ss_pred CCCcceeccCCCHHHHHHHHHHHHHHHhhccCccceeEEEEEEeeeeeecceeEEEEEEEEccCC--cc-----------
Q 027502 138 HGQEWLAVSTNDLEVKNAANHAVKSMQRKSNSLFLYELLEILQAKAKVIEDYAKFELHLKLRRGS--EE----------- 204 (222)
Q Consensus 138 ~~gg~~~i~~~d~~v~e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~QVVaG~~yy~l~l~~~~g~--~~----------- 204 (222)
.+|||.+++++||+++++|+||+.+||+++|+.|.+++.+|++|++|||+|++| .|++++.++. +.
T Consensus 2 ~~Gg~~~~~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG~~y-~l~~~v~~t~C~k~~~~~~~C~~~~ 80 (107)
T smart00043 2 CLGGPSDVPPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNY-YLKVEVGETNCKKLSVDLENCPFLD 80 (107)
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecceEE-EEEEEEEeceeccCCcccccCCCCC
Confidence 579999999999999999999999999999999988899999999999999995 6999988643 32
Q ss_pred ---ceEEEEEEeCCC
Q 027502 205 ---EKHWVEIIKNSE 216 (222)
Q Consensus 205 ---~~~~~~v~~~~~ 216 (222)
..+.++||..|-
T Consensus 81 ~~~~~C~~~V~~~pw 95 (107)
T smart00043 81 QGEKFCTAKVWEKPW 95 (107)
T ss_pred CCccEEEEEEEecCC
Confidence 268899998874
No 8
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=99.41 E-value=7.1e-13 Score=109.55 Aligned_cols=85 Identities=28% Similarity=0.346 Sum_probs=75.9
Q ss_pred ccCCceeeeCCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeec--cEEEEEEEEEEeC-CcceEEEEEEEE
Q 027502 29 QMRPGGVYDYGGNQNSAEIEGLARFAVQEHNKKENALLQFARVLKAKEQVVA--GKLYYLTLEVIDA-GKNKIYEAKIWV 105 (222)
Q Consensus 29 ~~l~GG~~~i~~~~~d~~v~~~a~fAv~~~N~~sn~~~~~~kV~~a~~QVVa--G~nY~l~v~v~~~-~~~~~c~~~V~~ 105 (222)
++....|.+++ |+++|.+|++++|||.+|| +.++.++|.+|.+++.|-++ |++|+|++.+.++ |+...|+|.||+
T Consensus 111 ~p~~~~Wi~I~-nin~p~VQeLgkFAV~EhN-K~gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkDg~G~~~~YeAvV~~ 188 (202)
T PF07430_consen 111 TPQSKKWIPIP-NINNPFVQELGKFAVIEHN-KAGDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKDGLGRLGNYEAVVWE 188 (202)
T ss_pred CcccCCCEECC-CCCcHHHHHHHHHHHHHHh-hcCCceEEEEEeeEEEEeccCCCceEEEEEEeecCCCCcCceEEEEEE
Confidence 55578999997 5899999999999999999 67889999999999999996 6999999999997 999999999999
Q ss_pred e-cCCCceeeE
Q 027502 106 K-PWINFKQLQ 115 (222)
Q Consensus 106 ~-PW~~~~~l~ 115 (222)
+ +|.+..+++
T Consensus 189 k~~~sk~i~i~ 199 (202)
T PF07430_consen 189 KQFLSKKIKIL 199 (202)
T ss_pred eccCcceEEEE
Confidence 9 577666654
No 9
>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein. This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.
Probab=98.34 E-value=1.8e-06 Score=64.15 Aligned_cols=64 Identities=23% Similarity=0.241 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeccEEEEEEEEEEeC--C-cceEEEEEEEE
Q 027502 42 QNSAEIEGLARFAVQEHNKKENALLQFARVLKAKEQVVAGKLYYLTLEVIDA--G-KNKIYEAKIWV 105 (222)
Q Consensus 42 ~~d~~v~~~a~fAv~~~N~~sn~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~--~-~~~~c~~~V~~ 105 (222)
.+..-+..++++|+++||...+..+.|++|++|..|..+|+.|+||+.+.+. + ....+++.||.
T Consensus 10 T~rd~~~~la~~al~k~N~~~~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~p~~e~~q~~v~~ 76 (92)
T TIGR01638 10 TNRDLLERLSYVASKKYNDTKFLNLELVEVVRANYRGGAKSKSYITFEARDKPDGPLGEYQQAAVVY 76 (92)
T ss_pred CHHHHHHHHHHHHHHHhhhhcCceEEEEEEEEEEeeccceEEEEEEEEEecCCCCCHHHhhheeeEe
Confidence 4667889999999999999999999999999999999999999999999983 3 44555666665
No 10
>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein. This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.
Probab=97.96 E-value=3.1e-05 Score=57.58 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=53.6
Q ss_pred eccCCCHHHHHHHHHHHHHHHhhccCccceeEEEEEEeeeeeecceeEEEEEEEEccCCc---cceEEEEEE
Q 027502 144 AVSTNDLEVKNAANHAVKSMQRKSNSLFLYELLEILQAKAKVIEDYAKFELHLKLRRGSE---EEKHWVEII 212 (222)
Q Consensus 144 ~i~~~d~~v~e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~QVVaG~~yy~l~l~~~~g~~---~~~~~~~v~ 212 (222)
+...+..-+.+++++|+++||+.-+..+ +|++|++|.-|+.+|..| +||+++.+... .+.|.+.|+
T Consensus 7 p~~T~rd~~~~la~~al~k~N~~~~t~l--EfV~vVrAn~~~~~g~~~-yITF~Ard~~d~p~~e~~q~~v~ 75 (92)
T TIGR01638 7 PIETNRDLLERLSYVASKKYNDTKFLNL--ELVEVVRANYRGGAKSKS-YITFEARDKPDGPLGEYQQAAVV 75 (92)
T ss_pred cccCHHHHHHHHHHHHHHHhhhhcCceE--EEEEEEEEEeeccceEEE-EEEEEEecCCCCCHHHhhheeeE
Confidence 4456777899999999999999987665 999999999999999995 69999997543 344555554
No 11
>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []. Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.
Probab=96.38 E-value=0.55 Score=40.24 Aligned_cols=167 Identities=16% Similarity=0.090 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCc---eeEEEEEEEEEEeec--cEEEEEEEEEEe---CCcceEEEEEEEEecCCCcee
Q 027502 42 QNSAEIEGLARFAVQEHNKKENAL---LQFARVLKAKEQVVA--GKLYYLTLEVID---AGKNKIYEAKIWVKPWINFKQ 113 (222)
Q Consensus 42 ~~d~~v~~~a~fAv~~~N~~sn~~---~~~~kV~~a~~QVVa--G~nY~l~v~v~~---~~~~~~c~~~V~~~PW~~~~~ 113 (222)
++.-..+.+|+-|..-+|-..+++ +.+.+|.+|...++. |-+|+|++.+.+ ++....|.|+|+-. -.+..-
T Consensus 4 p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~~e~~g~CsA~V~f~-~qkp~P 82 (220)
T PF06907_consen 4 PSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIEGEHLGNCSAEVFFK-NQKPRP 82 (220)
T ss_dssp TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT---EEEEEEEEEET-T-----
T ss_pred CcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhcCCceeEeEEEEEec-CCCCCC
Confidence 355678899999999999998887 456999999999985 799999999997 45788999999982 222334
Q ss_pred eEEEeeCCCCCCccc--cccc----ccccCCCCcceeccCC----CHHHHHHHHHHH--HHHHhh--ccCccceeEEEEE
Q 027502 114 LQEFKHAEHGPFSAL--SDLN----LKRGCHGQEWLAVSTN----DLEVKNAANHAV--KSMQRK--SNSLFLYELLEIL 179 (222)
Q Consensus 114 l~s~~c~~~~~~~~~--~~~~----~k~~~~~gg~~~i~~~----d~~v~e~a~fAv--~~~N~~--sn~~~~~~~~kV~ 179 (222)
-.++.|.......+. .|.. .|....+---.+||.+ +|+..-+=..|. ..|=.- |...-.|....|.
T Consensus 83 ~V~vtc~~~~~k~~~qeeD~~fY~~~k~~~~pl~a~~IPDs~G~i~p~m~P~w~La~v~ssyVmwq~STe~t~Y~maQi~ 162 (220)
T PF06907_consen 83 AVNVTCTGLIEKNKRQEEDYAFYQQMKSLKKPLSAQSIPDSHGNIEPEMEPVWHLAIVASSYVMWQKSTENTLYNMAQIK 162 (220)
T ss_dssp EEEEEECS-------HHHHHHHHHHHHC-SS--EEEEES-TTS---HHHHHHHHHHHHHHHHHHHHH--TT--EEEEEEE
T ss_pred cEEEEEEeccccCcchhHHHHHHHHHHhhcCccccccCCCCcCCcCccccchhhhhhhheeeEEEeccccceeheeeeec
Confidence 568899876532221 1100 0000000111223221 444444322222 233222 2223356788888
Q ss_pred Eeeeeee--cceeEEEEEEEEccCCccceEEEE
Q 027502 180 QAKAKVI--EDYAKFELHLKLRRGSEEEKHWVE 210 (222)
Q Consensus 180 ~a~~QVV--aG~~yy~l~l~~~~g~~~~~~~~~ 210 (222)
+++++-- +-+. |+.+|-+.+-...++--|.
T Consensus 163 sVkQ~kr~DD~i~-FdytVLLHe~~sQEIipc~ 194 (220)
T PF06907_consen 163 SVKQWKRNDDFIE-FDYTVLLHEMSSQEIIPCQ 194 (220)
T ss_dssp EEEEE--SSS-EE-EEEEEEEEETTTTEEEEEE
T ss_pred ceeeeeeccceee-eceEEEEeecccccceeeE
Confidence 8875533 2334 7888888887777764443
No 12
>TIGR01572 A_thl_para_3677 Arabidopsis paralogous family TIGR01572. This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.
Probab=93.01 E-value=6 Score=34.90 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeccEEEEEEEEEEeC---CcceEEEEEEEEecCCCceeeEEEeeC
Q 027502 47 IEGLARFAVQEHNKKENALLQFARVLKAKEQVVAGKLYYLTLEVIDA---GKNKIYEAKIWVKPWINFKQLQEFKHA 120 (222)
Q Consensus 47 v~~~a~fAv~~~N~~sn~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~---~~~~~c~~~V~~~PW~~~~~l~s~~c~ 120 (222)
++-.|+.++.-||-..+..+.|..|.+.-.+..+-+.|+||+++-+- +..+.|+..|.++- .+...|+..-|-
T Consensus 42 vklyAr~GLH~YN~~~GTNlel~~v~K~N~~~~~~~syyITL~A~DP~s~~s~qTFQtrV~e~~-~~~L~ltt~iaR 117 (265)
T TIGR01572 42 VKIYARVGLHRYNFLEGTNLELDHVDKFNKRMCALSSYYITLLAVDPDSRFLQQTFQVRVDEQK-LETLDLTVEIAR 117 (265)
T ss_pred HHHHHHhhhhhhhhccCccceehhhhhhccchhhheeeeEEEEEecCCccccceEEEEEEEecc-CCcEEEEEEEEe
Confidence 58899999999999998899999999999999999999999999984 46778888887753 234455544443
No 13
>PF00666 Cathelicidins: Cathelicidin; InterPro: IPR001894 The precursor sequences of a number of antimicrobial peptides secreted by neutrophils (polymorphonuclear leukocytes) upon activation have been found to be evolutionarily related and are collectively known as cathelicidins []. Structurally, these proteins consist of three domains: a signal sequence, a conserved region of about 100 residues that contains four cysteines involved in two disulphide bonds, and a highly divergent C-terminal section of variable size. It is in this C-terminal section that the antibacterial peptides are found; they are proteolytically processed from their precursor by enzymes such as elastase. This structure is shown in the following schematic representation: +---+--------------------------------+--------------------+ |Sig| Propeptide C C C C | Antibacterial pep. | +---+----------------|--|--|--|------+--------------------+ | | | | +--+ +--+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0006952 defense response, 0005576 extracellular region; PDB: 1KWI_A 1PFP_A 1LXE_A 1N5P_A 1N5H_A.
Probab=89.58 E-value=0.88 Score=31.96 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhccCccceeEEEEEEeeeeeec-ce-eEEEEEEEEccCCc
Q 027502 152 VKNAANHAVKSMQRKSNSLFLYELLEILQAKAKVIE-DY-AKFELHLKLRRGSE 203 (222)
Q Consensus 152 v~e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~QVVa-G~-~yy~l~l~~~~g~~ 203 (222)
++||+..||..||+++.+.+.|++....---.+... ++ +...++|+-+.|.+
T Consensus 4 Y~eav~~Av~~yN~~s~~~nlfRLLe~~p~P~~~~~~~~~~pl~FtIkETVC~~ 57 (67)
T PF00666_consen 4 YEEAVLRAVDFYNQGSSGENLFRLLELDPPPGWDEDPSTPKPLNFTIKETVCPK 57 (67)
T ss_dssp CHHHHHHHHHHHHHCS-SSEEEEEEEE---SSSSSSSSS-EEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHhcCCCccCceeeeeccCCCCCCCCcCcceeeEEEEeeccCCC
Confidence 578999999999999999998888777644444333 23 33456777666554
No 14
>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []. Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.
Probab=83.11 E-value=15 Score=31.56 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=48.0
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhccCcc-ceeEEEEEEeeeeeecce--eEEEEEEEEccCC---ccceEEEEEE
Q 027502 145 VSTNDLEVKNAANHAVKSMQRKSNSLF-LYELLEILQAKAKVIEDY--AKFELHLKLRRGS---EEEKHWVEII 212 (222)
Q Consensus 145 i~~~d~~v~e~a~fAv~~~N~~sn~~~-~~~~~kV~~a~~QVVaG~--~yy~l~l~~~~g~---~~~~~~~~v~ 212 (222)
++|+.--.++||+-|+-=+|-+..+.+ .|.+.+|.+|+..++.|. + |+|.+.+.+-. ...+=.|+|.
T Consensus 2 ~~p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~K-y~L~FSte~~~~~e~~g~CsA~V~ 74 (220)
T PF06907_consen 2 INPSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCK-YDLVFSTEEYIEGEHLGNCSAEVF 74 (220)
T ss_dssp --TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEE-EEEEEEEEETTT---EEEEEEEEE
T ss_pred CCCcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCE-EEEEEEhHHhhcCCceeEeEEEEE
Confidence 456666789999999999999988776 578899999999999765 6 67998888732 2233445554
No 15
>TIGR01572 A_thl_para_3677 Arabidopsis paralogous family TIGR01572. This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.
Probab=72.79 E-value=8.1 Score=34.10 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhccCccceeEEEEEEeeeeeecceeEEEEEEEEccCC---ccceEEEEEEeCCCCceec
Q 027502 152 VKNAANHAVKSMQRKSNSLFLYELLEILQAKAKVIEDYAKFELHLKLRRGS---EEEKHWVEIIKNSEGKFYL 221 (222)
Q Consensus 152 v~e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~QVVaG~~yy~l~l~~~~g~---~~~~~~~~v~~~~~~~~~~ 221 (222)
|+-.|+.++-.||......+ ++.+|.+.-++..+-+.| +||+++-+.. ..+.|...|.|...|+..|
T Consensus 42 vklyAr~GLH~YN~~~GTNl--el~~v~K~N~~~~~~~sy-yITL~A~DP~s~~s~qTFQtrV~e~~~~~L~l 111 (265)
T TIGR01572 42 VKIYARVGLHRYNFLEGTNL--ELDHVDKFNKRMCALSSY-YITLLAVDPDSRFLQQTFQVRVDEQKLETLDL 111 (265)
T ss_pred HHHHHHhhhhhhhhccCccc--eehhhhhhccchhhheee-eEEEEEecCCccccceEEEEEEEeccCCcEEE
Confidence 68899999999999976665 999999999999988884 6999999743 4667999999988777543
No 16
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=70.27 E-value=29 Score=28.26 Aligned_cols=58 Identities=9% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhccCccceeEEEEEEeeeeeecceeEEEEEEEEccCC-ccceEEEEEEeC
Q 027502 154 NAANHAVKSMQRKSNSLFLYELLEILQAKAKVIEDYAKFELHLKLRRGS-EEEKHWVEIIKN 214 (222)
Q Consensus 154 e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~QVVaG~~yy~l~l~~~~g~-~~~~~~~~v~~~ 214 (222)
+++...+........+. +..+++++.+....|..||.+...+..+. ....+.+.+..+
T Consensus 84 ~va~~l~~~~~~~~~~~---~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~ 142 (175)
T PF01789_consen 84 EVAERLLNGELASPGSG---REAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVK 142 (175)
T ss_dssp HHHHHHHHHCCCHCTSS---EEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHHhhhhcccccCC---cceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEE
Confidence 34444444433333333 88899999999999999988888777655 333334444333
No 17
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=56.69 E-value=9.9 Score=25.29 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHHHHhhccccCCCccc--------CCceeeeCC
Q 027502 11 VLVCGFIELGLCREGNFIQM--------RPGGVYDYG 39 (222)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~--------l~GG~~~i~ 39 (222)
++||+++++++|+..+...+ -+|-|.|.+
T Consensus 4 ~lL~l~l~La~CqT~D~lAtckGpiFpLNVgrWqptp 40 (55)
T PRK13859 4 CLLCLALALAGCQTNDTLASCKGPIFPLNVGRWQPTP 40 (55)
T ss_pred hHHHHHHHHHhccccCccccccCCccccccccccCCh
Confidence 57788888998886655433 356676664
No 18
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=53.15 E-value=43 Score=32.17 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEe--eccEEEEEEEEEEe
Q 027502 44 SAEIEGLARFAVQEHNKKENALLQFARVLKAKEQV--VAGKLYYLTLEVID 92 (222)
Q Consensus 44 d~~v~~~a~fAv~~~N~~sn~~~~~~kV~~a~~QV--VaG~nY~l~v~v~~ 92 (222)
-.++.++.+.|++.+|+.+...+.|.+++.+.+.+ .-|+-|.|++.+..
T Consensus 160 ~~dl~~vi~~a~~~ln~~~~~~~~~~~l~~GY~R~dp~rG~~Y~Ldl~l~~ 210 (499)
T PF05679_consen 160 REDLDDVIEQAMEELNRKSRRVLEFRDLINGYRRFDPTRGMDYILDLLLKY 210 (499)
T ss_pred HHHHHHHHHHHHHHHhccccccEEeeeeeeEEEEecCCCCceEEEEEEEee
Confidence 47899999999999999888779999999998777 46999999998875
No 19
>PF00666 Cathelicidins: Cathelicidin; InterPro: IPR001894 The precursor sequences of a number of antimicrobial peptides secreted by neutrophils (polymorphonuclear leukocytes) upon activation have been found to be evolutionarily related and are collectively known as cathelicidins []. Structurally, these proteins consist of three domains: a signal sequence, a conserved region of about 100 residues that contains four cysteines involved in two disulphide bonds, and a highly divergent C-terminal section of variable size. It is in this C-terminal section that the antibacterial peptides are found; they are proteolytically processed from their precursor by enzymes such as elastase. This structure is shown in the following schematic representation: +---+--------------------------------+--------------------+ |Sig| Propeptide C C C C | Antibacterial pep. | +---+----------------|--|--|--|------+--------------------+ | | | | +--+ +--+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0006952 defense response, 0005576 extracellular region; PDB: 1KWI_A 1PFP_A 1LXE_A 1N5P_A 1N5H_A.
Probab=52.98 E-value=17 Score=25.47 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEEEEEEEEEee----ccEEEEEEEEEEeC
Q 027502 47 IEGLARFAVQEHNKKENALLQFARVLKAKEQVV----AGKLYYLTLEVIDA 93 (222)
Q Consensus 47 v~~~a~fAv~~~N~~sn~~~~~~kV~~a~~QVV----aG~nY~l~v~v~~~ 93 (222)
++++...||+.||+.+.+. .+.+++.+.-|-- .++.--+.+.|.++
T Consensus 4 Y~eav~~Av~~yN~~s~~~-nlfRLLe~~p~P~~~~~~~~~~pl~FtIkET 53 (67)
T PF00666_consen 4 YEEAVLRAVDFYNQGSSGE-NLFRLLELDPPPGWDEDPSTPKPLNFTIKET 53 (67)
T ss_dssp CHHHHHHHHHHHHHCS-SS-EEEEEEEE---SSSSSSSSS-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcc-CceeeeeccCCCCCCCCcCcceeeEEEEeec
Confidence 5789999999999998764 3344555544432 22344555555553
No 20
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=52.23 E-value=40 Score=29.82 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.3
Q ss_pred EEEEEeeeeeecceeEEEEEEEEc
Q 027502 176 LEILQAKAKVIEDYAKFELHLKLR 199 (222)
Q Consensus 176 ~kV~~a~~QVVaG~~yy~l~l~~~ 199 (222)
.+|+++++..+.|..||.|.+.+.
T Consensus 185 a~Lleas~re~dGk~YY~lE~~~~ 208 (260)
T PLN00042 185 AAVLESSTQEVGGKPYYYLSVLTR 208 (260)
T ss_pred eeEEEeeeEEeCCeEEEEEEEEEe
Confidence 478999999999999987777754
No 21
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=48.85 E-value=39 Score=29.91 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.4
Q ss_pred eeEEEEEEeeeeeecceeEEEEEEEEcc
Q 027502 173 YELLEILQAKAKVIEDYAKFELHLKLRR 200 (222)
Q Consensus 173 ~~~~kV~~a~~QVVaG~~yy~l~l~~~~ 200 (222)
+...+|++|++..+.|..||.++++..-
T Consensus 190 ~~~~eLLeAs~re~dGktYY~~E~~tp~ 217 (263)
T PLN00067 190 YDPDELLETSVEKIGDQTYYKYVLETPF 217 (263)
T ss_pred CCCcceEEeeeEeeCCeEEEEEEEEecC
Confidence 4566899999999999999988887653
No 22
>PF15240 Pro-rich: Proline-rich
Probab=43.48 E-value=16 Score=30.54 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhcccc
Q 027502 9 LSVLVCGFIELGLCRE 24 (222)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (222)
|++|.++||||++|++
T Consensus 3 lVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 3 LVLLSVALLALSSAQS 18 (179)
T ss_pred hHHHHHHHHHhhhccc
Confidence 4556688999999973
No 23
>CHL00132 psaF photosystem I subunit III; Validated
Probab=37.71 E-value=71 Score=26.73 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=21.1
Q ss_pred CCceeeeCCCCCCCHHHHHHHHHHHHHHHh
Q 027502 31 RPGGVYDYGGNQNSAEIEGLARFAVQEHNK 60 (222)
Q Consensus 31 l~GG~~~i~~~~~d~~v~~~a~fAv~~~N~ 60 (222)
-.+|.+|=+ ++|.+++-++-++.++.+
T Consensus 25 d~agLtpCs---es~aF~kR~~~~~k~Le~ 51 (185)
T CHL00132 25 DVAGLTPCS---ESPAFQKRLNNSVKKLEN 51 (185)
T ss_pred cccCCccCc---cCHHHHHHHHHHHHHHHh
Confidence 478888887 789999988888866443
No 24
>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane [].; PDB: 2CIU_A.
Probab=36.26 E-value=40 Score=27.01 Aligned_cols=73 Identities=10% Similarity=0.167 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCccceeEEEEEEeeeeeecceeEEEEEEEEccCCccceEEEEEEeCCC-Cce
Q 027502 147 TNDLEVKNAANHAVKSMQRKSNSLFLYELLEILQAKAKVIEDYAKFELHLKLRRGSEEEKHWVEIIKNSE-GKF 219 (222)
Q Consensus 147 ~~d~~v~e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~QVVaG~~yy~l~l~~~~g~~~~~~~~~v~~~~~-~~~ 219 (222)
.+||++++++.--+..|...+....--+=..+++-+.---.|..+..+..-+....+.-.=.+|+.++++ ++|
T Consensus 51 ~~d~~v~~~LG~~ikayGe~~~~~Rw~R~R~~~s~~~~d~~G~eh~~m~F~V~G~~~~G~V~~e~~k~~~~~~~ 124 (145)
T PF08294_consen 51 KKDPRVQDLLGEPIKAYGEETGRNRWRRNRPIVSHREYDKDGREHMRMKFYVEGPRGKGVVHLEMVKDDGSGEY 124 (145)
T ss_dssp HH-HHHHHHT----EEEE-EEE-SS-EEE----EEEEE-TTS-EEEEEEEEEE-SS-EEEEEEEEE--SS-SS-
T ss_pred hcCHHHHHHhCCCeEEecCCCCCCcccccCCccceEEEcCCCCEEEEEEEEEEeCCCeEEEEEEEEECCCCCCe
Confidence 4799999999888888887765221111223444444456888875666666654455556788887775 665
No 25
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=36.25 E-value=2.2e+02 Score=25.47 Aligned_cols=44 Identities=7% Similarity=0.222 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhh-----ccCccceeEEEEEEeeeeee-cceeEEEEEEEEcc
Q 027502 154 NAANHAVKSMQRK-----SNSLFLYELLEILQAKAKVI-EDYAKFELHLKLRR 200 (222)
Q Consensus 154 e~a~fAv~~~N~~-----sn~~~~~~~~kV~~a~~QVV-aG~~yy~l~l~~~~ 200 (222)
+++..-++++... .++. +-.++++|++... +|..||.|...+.-
T Consensus 172 eVgerLlkqvLa~f~str~Gsg---ReaeLVsA~~Re~~DGktYY~lEY~Vks 221 (286)
T PLN00059 172 EVGKRVLRQYLTEFMSTRLGVK---REANILSTSSRVADDGKLYYQVEVNIKS 221 (286)
T ss_pred HHHHHHHHHHhcccccccCCCC---cceEEEEeeeEEccCCcEEEEEEEEEEc
Confidence 4556666666543 1222 4678999998866 89999988888765
No 26
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=32.89 E-value=1.8e+02 Score=20.56 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeecc--EEEEEEEEEE
Q 027502 46 EIEGLARFAVQEHNKKENALLQFARVLKAKEQVVAG--KLYYLTLEVI 91 (222)
Q Consensus 46 ~v~~~a~fAv~~~N~~sn~~~~~~kV~~a~~QVVaG--~nY~l~v~v~ 91 (222)
.+.++++-|+..-. ++-+.+.+.+|++-+-+|+.| ..|.++++++
T Consensus 18 S~d~Ai~~Ai~RA~-~t~~~l~wfeV~~~rg~v~~g~v~hyqv~lkVg 64 (71)
T COG3360 18 SIDAAIANAIARAA-DTLDNLDWFEVVETRGHVVDGAVAHYQVTLKVG 64 (71)
T ss_pred cHHHHHHHHHHHHH-hhhhcceEEEEEeecccEeecceEEEEEEEEEE
Confidence 34456666665432 234568889999999999988 5688888776
No 27
>PTZ00444 hypothetical protein; Provisional
Probab=32.17 E-value=38 Score=28.32 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.3
Q ss_pred CCchhhHHHHHHHHHHHHhhccc
Q 027502 1 MNRYSVIVLSVLVCGFIELGLCR 23 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (222)
|++++++++++|+.+....++|-
T Consensus 1 m~~~~~~~~~~l~~~~~~~~a~l 23 (184)
T PTZ00444 1 MRQRSLLFLLLLVFSYINFSACL 23 (184)
T ss_pred CchHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999885
No 28
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=32.02 E-value=1.8e+02 Score=27.94 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhccCccceeEEEEEEeeeee--ecceeEEEEEEEEcc
Q 027502 150 LEVKNAANHAVKSMQRKSNSLFLYELLEILQAKAKV--IEDYAKFELHLKLRR 200 (222)
Q Consensus 150 ~~v~e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~QV--VaG~~yy~l~l~~~~ 200 (222)
.++.++.+.|++..|+.+.. .+++.+++.+-..+ .-|+.| .|++.+..
T Consensus 161 ~dl~~vi~~a~~~ln~~~~~--~~~~~~l~~GY~R~dp~rG~~Y-~Ldl~l~~ 210 (499)
T PF05679_consen 161 EDLDDVIEQAMEELNRKSRR--VLEFRDLINGYRRFDPTRGMDY-ILDLLLKY 210 (499)
T ss_pred HHHHHHHHHHHHHHhccccc--cEEeeeeeeEEEEecCCCCceE-EEEEEEee
Confidence 68999999999999998863 44789999998775 579994 68877653
No 29
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=31.71 E-value=32 Score=22.56 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=12.4
Q ss_pred CCchhhHHHHHHHHHHHHhhcc
Q 027502 1 MNRYSVIVLSVLVCGFIELGLC 22 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (222)
|-+-.+..++++++++++++.|
T Consensus 1 MmKk~i~~i~~~l~~~~~l~~C 22 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVLTAC 22 (48)
T ss_pred ChHHHHHHHHHHHHHHHHHhhh
Confidence 3344445555556666667766
No 30
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=31.20 E-value=1.8e+02 Score=20.60 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhccCccceeEEEEEEeeeeeecce-eEEEEEEEEc
Q 027502 152 VKNAANHAVKSMQRKSNSLFLYELLEILQAKAKVIEDY-AKFELHLKLR 199 (222)
Q Consensus 152 v~e~a~fAv~~~N~~sn~~~~~~~~kV~~a~~QVVaG~-~yy~l~l~~~ 199 (222)
+.+|++-|+. +.+.+.-....-+|+.-+-+|+.|. .+|.++++++
T Consensus 19 ~d~Ai~~Ai~---RA~~t~~~l~wfeV~~~rg~v~~g~v~hyqv~lkVg 64 (71)
T COG3360 19 IDAAIANAIA---RAADTLDNLDWFEVVETRGHVVDGAVAHYQVTLKVG 64 (71)
T ss_pred HHHHHHHHHH---HHHhhhhcceEEEEEeecccEeecceEEEEEEEEEE
Confidence 4445554443 3344555668889999999999887 5578888876
No 31
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=31.10 E-value=1e+02 Score=21.78 Aligned_cols=30 Identities=7% Similarity=0.256 Sum_probs=19.0
Q ss_pred EEEEEEEccCCc--cceEEEEEEeCCCCceec
Q 027502 192 FELHLKLRRGSE--EEKHWVEIIKNSEGKFYL 221 (222)
Q Consensus 192 y~l~l~~~~g~~--~~~~~~~v~~~~~~~~~~ 221 (222)
|..+|+..+.+. .+-|..+++++..|.|.|
T Consensus 6 ~~~~L~~~d~~~n~nkfy~iql~~~~~~~~~v 37 (84)
T smart00773 6 YDVYLNQTDLASNNNKFYRIQLLEDDFGGYSV 37 (84)
T ss_pred eEEEEEccccccCCeeEEEEEEEEcCCCCEEE
Confidence 466666665444 455777777777766654
No 32
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=28.60 E-value=66 Score=22.79 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=19.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhc
Q 027502 145 VSTNDLEVKNAANHAVKSMQRKS 167 (222)
Q Consensus 145 i~~~d~~v~e~a~fAv~~~N~~s 167 (222)
-.|+||+..--.+|++.+||--.
T Consensus 29 ~~~~nP~~La~~Q~~~~qYs~~~ 51 (72)
T TIGR02105 29 DLPNDPELMAELQFALNQYSAYY 51 (72)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999753
No 33
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=28.59 E-value=57 Score=25.80 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=19.0
Q ss_pred CCchhhHHHHHHHHHHHHhhccccCCCcccCCceeeeC
Q 027502 1 MNRYSVIVLSVLVCGFIELGLCREGNFIQMRPGGVYDY 38 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GG~~~i 38 (222)
|.+..+++++++++++.+.++++ .....+|=|.--
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~a~---~~~~kpGlWe~t 35 (162)
T PF12276_consen 1 MKRRLLLALALALLALAAAAAAA---APDIKPGLWEVT 35 (162)
T ss_pred CchHHHHHHHHHHHHhhcccccc---cCCCCCcccEEE
Confidence 77776666666665543333332 223447777544
No 34
>PF12274 DUF3615: Protein of unknown function (DUF3615); InterPro: IPR022059 This domain family is found in bacteria and eukaryotes, and is typically between 86 and 97 amino acids in length. There is a conserved FAE sequence motif. There is a single completely conserved residue F that may be functionally important.
Probab=26.92 E-value=2.5e+02 Score=20.37 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=31.4
Q ss_pred HHhhcc-CccceeEEEEEEeeeeeeccee-EEEEEEEEcc------CCccceEEEEEE
Q 027502 163 MQRKSN-SLFLYELLEILQAKAKVIEDYA-KFELHLKLRR------GSEEEKHWVEII 212 (222)
Q Consensus 163 ~N~~sn-~~~~~~~~kV~~a~~QVVaG~~-yy~l~l~~~~------g~~~~~~~~~v~ 212 (222)
||++.+ ....|++.+|+.+..=.-.|.. |+++-..+.. .+....|=|||.
T Consensus 1 Yn~~~~~~~~~yeL~~v~~~~~~~e~~~~~y~HvNF~A~~~~~~~~~~~~~LFFAE~~ 58 (96)
T PF12274_consen 1 YNEDHPLLGLEYELVDVLHSCFIFERGGWNYYHVNFTAKTKGPDSDDGSPTLFFAEVS 58 (96)
T ss_pred CcccCCCCCcCEEEeEEEeeeeeEeCCCcEEEeEEEEEEcCCccCCCCCceEEEEEEe
Confidence 455542 1445799999887644444443 6655555553 235778999999
No 35
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=26.28 E-value=83 Score=22.32 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=19.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHhh
Q 027502 145 VSTNDLEVKNAANHAVKSMQRK 166 (222)
Q Consensus 145 i~~~d~~v~e~a~fAv~~~N~~ 166 (222)
-+++||+..--++|++.+|+.-
T Consensus 28 ~~~~nP~~ml~lQf~i~QyS~~ 49 (71)
T PRK15344 28 NDLLNPESMIKAQFALQQYSTF 49 (71)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999874
No 36
>KOG4306 consensus Glycosylphosphatidylinositol-specific phospholipase C [Signal transduction mechanisms]
Probab=26.09 E-value=42 Score=30.36 Aligned_cols=27 Identities=7% Similarity=0.256 Sum_probs=20.5
Q ss_pred EEeeeeeecceeEEEEEEEEccCCccc
Q 027502 179 LQAKAKVIEDYAKFELHLKLRRGSEEE 205 (222)
Q Consensus 179 ~~a~~QVVaG~~yy~l~l~~~~g~~~~ 205 (222)
+....|+++|+.|++|.|.....+.+.
T Consensus 70 l~i~~QL~~GvRylDlRi~~~~~~~D~ 96 (306)
T KOG4306|consen 70 LDIREQLVAGVRYLDLRIGYKLMDPDR 96 (306)
T ss_pred cchHHHHhhcceEEEEEeeeccCCCCc
Confidence 345679999999888888877666544
No 37
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=25.34 E-value=74 Score=30.50 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=28.4
Q ss_pred CCCcceeccCCCHHHHHHHHHHHHHHHhhccC
Q 027502 138 HGQEWLAVSTNDLEVKNAANHAVKSMQRKSNS 169 (222)
Q Consensus 138 ~~gg~~~i~~~d~~v~e~a~fAv~~~N~~sn~ 169 (222)
.+.+|.+++.+++.++.+|+++|..+|+.-..
T Consensus 450 ~C~~~~~~~~~~~~~~~~a~~~v~~iN~~l~~ 481 (497)
T PF02995_consen 450 TCEGWKTIPTNDSLVQRIAKFLVDHINEYLKE 481 (497)
T ss_pred cCcCccccccCcHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999997544
No 38
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=24.75 E-value=1.5e+02 Score=23.99 Aligned_cols=20 Identities=30% Similarity=0.224 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 027502 42 QNSAEIEGLARFAVQEHNKK 61 (222)
Q Consensus 42 ~~d~~v~~~a~fAv~~~N~~ 61 (222)
+..+.-+.+|.-++.++-+.
T Consensus 28 ~s~~~a~~iA~D~v~qL~~~ 47 (151)
T PRK13883 28 ASAADQQKLATDAVQQLATL 47 (151)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 46788889999999888665
No 39
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.68 E-value=65 Score=24.35 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=15.5
Q ss_pred CCchhhHHHHHHHHHHHHhhcc
Q 027502 1 MNRYSVIVLSVLVCGFIELGLC 22 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (222)
|.+|..++|.++++++.+....
T Consensus 1 ~~~~~~~~l~~lvl~L~~~l~~ 22 (110)
T PF10828_consen 1 MKKYIYIALAVLVLGLGGWLWY 22 (110)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 8999888877776666555443
No 40
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=24.58 E-value=33 Score=20.25 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHhhc
Q 027502 5 SVIVLSVLVCGFIELGL 21 (222)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (222)
-+.+..++|.+..+++.
T Consensus 11 gvvti~viliavaalg~ 27 (33)
T PF09049_consen 11 GVVTIIVILIAVAALGA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cEEEehhHHHHHHHHhh
Confidence 46677777777777663
No 41
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=24.52 E-value=2.5e+02 Score=19.52 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeecc--EEEEEEEEEE
Q 027502 44 SAEIEGLARFAVQEHNKKENALLQFARVLKAKEQVVAG--KLYYLTLEVI 91 (222)
Q Consensus 44 d~~v~~~a~fAv~~~N~~sn~~~~~~kV~~a~~QVVaG--~nY~l~v~v~ 91 (222)
.....++++-|+.+-++ +=..++..+|..-+-.|..| ..|+.+++++
T Consensus 13 ~~S~edAv~~Av~~A~k-Tl~ni~~~eV~e~~~~v~dg~i~~y~v~lkv~ 61 (66)
T PF07311_consen 13 PKSWEDAVQNAVARASK-TLRNIRWFEVKEQRGHVEDGKITEYQVNLKVS 61 (66)
T ss_dssp SSHHHHHHHHHHHHHHH-HSSSEEEEEEEEEEEEEETTCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHhh-chhCcEEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 45678888888888765 33567889999999999888 6788888775
No 42
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=24.07 E-value=1.5e+02 Score=23.25 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=28.8
Q ss_pred eeecceeEEEEEEEEccCCccceEEEEEEeCCCCce
Q 027502 184 KVIEDYAKFELHLKLRRGSEEEKHWVEIIKNSEGKF 219 (222)
Q Consensus 184 QVVaG~~yy~l~l~~~~g~~~~~~~~~v~~~~~~~~ 219 (222)
..+.|.. +.+..+++...+-..|++++|.|-|||-
T Consensus 31 ~~~~G~~-ihfe~~i~d~~~i~si~VeIH~nfd~H~ 65 (132)
T PF15418_consen 31 VATRGDD-IHFEADISDNSAIKSIKVEIHNNFDHHT 65 (132)
T ss_pred EEecCCc-EEEEEEEEcccceeEEEEEEecCcCccc
Confidence 3678888 6788899988888889999988877774
No 43
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=24.01 E-value=40 Score=26.29 Aligned_cols=10 Identities=40% Similarity=0.972 Sum_probs=5.9
Q ss_pred HHHHHHHhhc
Q 027502 12 LVCGFIELGL 21 (222)
Q Consensus 12 ~~~~~~~~~~ 21 (222)
|||+||+|+.
T Consensus 6 LLCalLvlaL 15 (143)
T PF01456_consen 6 LLCALLVLAL 15 (143)
T ss_pred HHHHHHHHHH
Confidence 4566666555
No 44
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=23.76 E-value=1.2e+02 Score=21.79 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEEccCCccceEEEEEEeCCCCceec
Q 027502 193 ELHLKLRRGSEEEKHWVEIIKNSEGKFYL 221 (222)
Q Consensus 193 ~l~l~~~~g~~~~~~~~~v~~~~~~~~~~ 221 (222)
.|.+.+...+. +...+.|.++.||+|.+
T Consensus 33 ~~~v~i~~p~g-~~~~~~v~d~~dGty~v 60 (93)
T smart00557 33 ELEVEVTGPSG-KKVPVEVKDNGDGTYTV 60 (93)
T ss_pred cEEEEEECCCC-CeeEeEEEeCCCCEEEE
Confidence 35666665443 34688889999998865
No 45
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=22.86 E-value=65 Score=27.73 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHhhc
Q 027502 5 SVIVLSVLVCGFIELGL 21 (222)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (222)
.+|++|||+|.||-++-
T Consensus 135 IIIAVLfLICT~LfLST 151 (227)
T PF05399_consen 135 IIIAVLFLICTLLFLST 151 (227)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57888999998887663
No 46
>PLN03207 stomagen; Provisional
Probab=22.55 E-value=92 Score=23.63 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHH
Q 027502 5 SVIVLSVLVCGFI 17 (222)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (222)
..+.|++|||.|+
T Consensus 11 ~~~~lffLl~~ll 23 (113)
T PLN03207 11 RCLTLFFLLFFLL 23 (113)
T ss_pred hhHHHHHHHHHHH
Confidence 4555555555555
No 47
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=22.37 E-value=40 Score=17.62 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=6.9
Q ss_pred CCchhhHHHHHHHHHH
Q 027502 1 MNRYSVIVLSVLVCGF 16 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (222)
|-|..++...+|+.+|
T Consensus 1 MMk~vIIlvvLLliSf 16 (19)
T PF13956_consen 1 MMKLVIILVVLLLISF 16 (19)
T ss_pred CceehHHHHHHHhccc
Confidence 4444444344444444
No 48
>MTH00261 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=22.16 E-value=79 Score=21.50 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=12.4
Q ss_pred CchhhHHHHHHHHHHHHh
Q 027502 2 NRYSVIVLSVLVCGFIEL 19 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (222)
++|+++.|+++++.++..
T Consensus 11 nhyfvllllf~iliilis 28 (68)
T MTH00261 11 NHYFVLLLLFFILIILIS 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578888877777665543
No 49
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.50 E-value=89 Score=23.36 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=7.7
Q ss_pred CCchhhHHHHHHHH
Q 027502 1 MNRYSVIVLSVLVC 14 (222)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (222)
|+||+.|=-+++++
T Consensus 1 mN~yp~WKyllil~ 14 (101)
T PF13721_consen 1 MNRYPLWKYLLILV 14 (101)
T ss_pred CCCcchHHHHHHHH
Confidence 78886554333333
No 50
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=20.25 E-value=62 Score=24.77 Aligned_cols=15 Identities=13% Similarity=0.210 Sum_probs=8.9
Q ss_pred CCchhhHHHHHHHHH
Q 027502 1 MNRYSVIVLSVLVCG 15 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (222)
|.+|+++++++++|.
T Consensus 1 ~~~~~i~~~Ll~~~~ 15 (115)
T PF12984_consen 1 KKIYFILFFLLLCSL 15 (115)
T ss_pred CcEEEHHHHHHHHhh
Confidence 566777665555544
Done!