BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027503
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/169 (63%), Positives = 133/169 (78%)
Query: 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
D+E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V K IKAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
WDTAGQER+RAITS+YYRGA+GALLVYDI + T+EN ++WL+ELR+ S + I+LVGN
Sbjct: 83 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
KSDL H R V +E + AE GL F+ETSA+ + NVE AF ++ +I+
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 223 bits (567), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 110/180 (61%), Positives = 141/180 (78%), Gaps = 5/180 (2%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKL 60
GD YD YLFK V+IGDS VGKSNLLSRF RDEF L+SK TIGVEFA ++I++ +K+
Sbjct: 1 GDYYD----YLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKI 56
Query: 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
IKAQIWDTAGQER+RAITS+YYRGA+GALLVYDIT++ +FEN +KWL+ELR+ S + I
Sbjct: 57 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVI 116
Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
+LVGNKSDL H R +N+ + A+ E L F+ETSA++ NVE AF Q++N+I+ +K
Sbjct: 117 LLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/187 (57%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V K IKAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQER+R ITS+YYRGA+GALLVYDI + T+EN ++WL+ELR+ S + I+LVGNKSDL
Sbjct: 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK-MND 188
H R V +E + AE L F+ETSA+ + NVE+AF ++ +I++ QK + + +D
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182
Query: 189 KTATSNC 195
++ +N
Sbjct: 183 ESPGNNV 189
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 132/169 (78%)
Query: 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
D+E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V K IKAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
WDTAG ER+RAITS+YYRGA+GALLVYDI + T+EN ++WL+ELR+ S + I+LVGN
Sbjct: 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
KSDL H R V +E + AE GL F+ETSA+ + NVE AF ++ +I+
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 221 bits (562), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 131/169 (77%)
Query: 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
D+E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V K IKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
WDTAG ER+RAITS+YYRGA+GALLVYDI + T+EN ++WL+ELR+ S + I LVGN
Sbjct: 65 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
KSDL H R V +E + AE GL F+ETSA+ + NVE AF ++ +I+
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 220 bits (561), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 105/166 (63%), Positives = 131/166 (78%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V K IKAQIWDTA
Sbjct: 18 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 77
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQER+RAITS+YYRGA+GALLVYDI + T+EN ++WL+ELR+ S + I+LVGNKSDL
Sbjct: 78 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 137
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
H R V +E + AE GL F+ETSA+ + NVE AF ++ +I++
Sbjct: 138 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 219 bits (559), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 105/169 (62%), Positives = 132/169 (78%)
Query: 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
+E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V K IKAQIW
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
DTAG ER+RAITS+YYRGA+GALLVYDI + T+EN ++WL+ELR+ S + I+LVGNK
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
SDL H R V +E + AE GL F+ETSA+ + NVE AF ++ +I++
Sbjct: 123 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 129/167 (77%)
Query: 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
E DYLFK V+IGDS VGKSNLLSRF R+EF L+SK TIGVEFA R+I+V K IKAQIWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
TAG ER+RAITS+YYRGA+GALLVYDI + T+EN ++WL+ELR+ S + I LVGNKS
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
DL H R V +E + AE GL F+ETSA+ + NVE AF ++ +I+
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 213 bits (543), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 105/194 (54%), Positives = 136/194 (70%), Gaps = 2/194 (1%)
Query: 3 DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIK 62
+ Y + D LFK V+IGDS VGKSNLLSRF ++EF +DSK TIGVEFA R + + K IK
Sbjct: 4 EDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIK 63
Query: 63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVL 122
AQIWDTAGQER+RAITS+YYRGA+GAL+VYDI++ +++EN WL ELRE +A+ L
Sbjct: 64 AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGL 123
Query: 123 VGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
+GNKSDL H R V EE K A+ L F ETSA+ + NV+ AF ++IN I+Q + +
Sbjct: 124 IGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQM 183
Query: 183 CAKMNDKTATSNCN 196
+ D +A N N
Sbjct: 184 --DLGDSSANGNAN 195
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 200 bits (509), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 130/170 (76%)
Query: 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
S+ E+ +++FK V+IG+S VGK+NLLSRF R+EF DS+ TIGVEF+ R + +G +KA
Sbjct: 2 SHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 61
Query: 64 QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
QIWDTAG ER+RAITS+YYRGA+GALLV+D+T+ T+ ++WL+EL + + + ++LV
Sbjct: 62 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 121
Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
GNKSDL+ +REV EE ++ AE GL F+ETSA+ + NVE AF ++ +I
Sbjct: 122 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 200 bits (508), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 123/168 (73%)
Query: 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
+ DYLFK V+IGDS VGKSNLLSRF DEF ++SK TIGVEFA R I V +K IKAQIWD
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
TAG ER+RAITS+YYRGA+GAL+VYDI++ +++EN WL ELRE +A+ L+GNKS
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
DL H R V +E K A + F ETSA+ + NV+ AF ++I I Q
Sbjct: 126 DLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQ 173
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 128/167 (76%)
Query: 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
E+ +++FK V+IG+S VGK+NLLSRF R+EF DS+ TIGVEF+ R + +G +KAQIW
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
DTAG ER+RAITS+YYRGA+GALLV+D+T+ T+ ++WL+EL + + + ++LVGNK
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 139
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
SDL+ +REV EE ++ AE GL F+ETSA+ + NVE AF ++ +I
Sbjct: 140 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 180 bits (456), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/165 (53%), Positives = 110/165 (66%)
Query: 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
Y+FK ++IGD VGKS LL +F +F D TIGVEF R I V + IK QIWDTAG
Sbjct: 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
QERFRA+T SYYRGA GAL+VYDITRR+T+ + WL + R + I+L+GNK+DL
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R+V EE K AE GL F+E SA NVEDAFL+ +I+Q
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 179 bits (455), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 92/165 (55%), Positives = 112/165 (67%)
Query: 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
YLFK ++IGD+ VGKS LL +F F+ TIGVEF R I + K IK QIWDTAG
Sbjct: 9 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
QE FR+IT SYYRGA GALLVYDITRR TF + WL + R+ +S M I+L+GNKSDL
Sbjct: 69 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
REV +EEG+ A GL FMETSA NVE+AF+ +I++
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
YLFK ++IGD+ VGKS LL +F F+ TIGVEF R + + K IK QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
QE FR+IT SYYRGA GALLVYDITRR TF + WL + R+ SS M I+L+GNKSDL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSL 182
R+V EEG+ A GL FMETSA NVE+AF+ +I++ IQ+ L
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR-KIQQGL 190
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 109/165 (66%)
Query: 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
Y+FK ++IGD VGKS LL +F +F D TIGVEF R I V + IK QIWDTAG
Sbjct: 29 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
Q RFRA+T SYYRGA GAL+VYDITRR+T+ + WL + R + I+L+GNK+DL
Sbjct: 89 QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R+V EE K AE GL F+E SA NVEDAFL+ +I+Q
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 125/203 (61%), Gaps = 7/203 (3%)
Query: 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
+ E DYLFK ++IG+S VGKS LL RF+ D + D TIGV+F + + + K +K QI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
WDTAGQERFR ITSSYYRG+ G ++VYD+T + +F K WL+E+ + +S + +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
K DL R V + K A+ + F+ETSA+ + NVEDAFL M QI ++ Q++L
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 186 MNDKTATSNCN-------NLGGG 201
K N N N GGG
Sbjct: 182 TQKKEDKGNVNLKGQSLTNTGGG 204
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 115/170 (67%)
Query: 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
+ E DYLFK ++IGDS VGKS LL RFA D + TIGV+F R I + +K +K QI
Sbjct: 3 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
WDTAGQERFR ITSSYYRGA G ++VYD+T R +F+N K+W++E+ + + +LVGN
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
K DL R V +EG+ LA++ G+ F+ETSA NVE AF M +I +
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKK 172
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 121/191 (63%)
Query: 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
+ E DYLFK ++IG+S VGKS LL RF+ D + D TIGV+F + + + K +K QI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
WDTAGQERFR ITSSYYRG+ G ++VYD+T + +F K WL+E+ + +S + +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAK 185
K DL R V + K A+ + F+ETSA+ + NVEDAFL M QI ++ Q++L
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 186 MNDKTATSNCN 196
K N N
Sbjct: 182 TQKKEDKGNVN 192
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 113/169 (66%)
Query: 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
E DYLFK ++IGDS VGKS LL RFA D + TIGV+F R I + K IK QIW
Sbjct: 4 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
DTAGQERFR ITSSYYRGA G ++VYD+T + ++ N K+WL+E+ + S + +LVGNK
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNK 123
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
SDLT + V+ K A++ G+ F+ETSA NVE AF+ M +I +
Sbjct: 124 SDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 113/168 (67%)
Query: 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
E DYLFK ++IGDS VGKS LL RFA D + TIGV+F R I + K IK QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
TAGQERFR ITSSYYRGA G ++VYD+T + ++ N K+WL+E+ + S + +LVGNKS
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
DLT + V+ K A++ G+ F+ETSA NVE AF+ M +I +
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/180 (47%), Positives = 120/180 (66%), Gaps = 9/180 (5%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
DYLFK ++IGDS VGK+ +L RF+ D F TIG++F R I + K IK QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQERFR IT++YYRGA+G +LVYDIT +F+N + W+R + E S+ + +++GNK D+
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDK 189
R+V++E G+ LA G+ FMETSA N+NVE+AF T+ + + AKM+ K
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF---------TLARDIKAKMDKK 174
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 114/172 (66%)
Query: 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
S + E DYLFK ++IGDS VGKS LL RFA D + TIGV+F R I + K IK
Sbjct: 8 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
Query: 64 QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
QIWDTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+ + S + +LV
Sbjct: 68 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127
Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
GNK DLT + V+ K A++ G+ F+ETSA NVE +F+ M +I +
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
DYLFK ++IGDS VGK+ +L RF+ D F TIG++F R I + K IK QIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQERFR IT++YYRGA+G +LVYDIT +F+N + W+R + E S+ + +++GNK D+
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V++E G+ LA G+ FMETSA N+NVE+AF + I
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 114/172 (66%)
Query: 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
S + E DYLFK ++IGDS VGK+ LL RFA D + TIGV+F R I + K IK
Sbjct: 8 SMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
Query: 64 QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
QIWDTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+ + S + +LV
Sbjct: 68 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127
Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
GNK DLT + V+ K A++ G+ F+ETSA NVE +F+ M +I +
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 112/169 (66%)
Query: 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
E DYLFK ++IGDS VGKS LL RFA D + TIGV+F R I + K IK QIW
Sbjct: 1 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
DTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+ + S + +LVGNK
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 120
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
DLT + V+ K A++ G+ F+ETSA NVE +F+ M +I +
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 112/169 (66%)
Query: 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
E DYLFK ++IGDS VGKS LL RFA D + TIGV+F R I + K IK QIW
Sbjct: 20 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 79
Query: 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
DTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+ + S + +LVGNK
Sbjct: 80 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 139
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
DLT + V+ K A++ G+ F+ETSA NVE +F+ M +I +
Sbjct: 140 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 188
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 113/169 (66%)
Query: 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67
E DYLFK ++IG+S VGKS LL RF+ D + D TIGV+F + + + K +K QIWD
Sbjct: 17 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127
TAGQERFR ITSSYYRG+ G ++VYD+T + +F K WL+E+ + +S + +LVGNK
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
DL R V + K A+ + F+ETSA+ + NVEDAFL M QI ++
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 185
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 111/168 (66%), Gaps = 4/168 (2%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
D+LFK ++IG + GKS LL +F ++F+ DS TIGVEF R + VG K +K QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQERFR++T SYYRGA GALLVYDIT R T+ + WL + R S + ++L GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ----MINQI 173
REV E A+ L F+ETSA+ NVE+AFL+ ++N+I
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 108/167 (64%)
Query: 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
E D+LFK ++IG++ GKS LL +F +F+ DS TIGVEF + I VG K +K QIW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
DTAGQERFR++T SYYRGA GALLVYDIT R T+ WL + R S + I+L GNK
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
DL REV E A+ L F+ETSA+ NVE+AF+Q +I
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 112/172 (65%)
Query: 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKA 63
S + E DYLFK ++IGDS VGKS LL RFA D + TIGV+F R I + K IK
Sbjct: 25 SXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 84
Query: 64 QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV 123
QIWDTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+ + S + +LV
Sbjct: 85 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 144
Query: 124 GNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
GNK DLT + V+ K A++ G+ F+ETSA NVE +F +I +
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKK 196
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 112/170 (65%)
Query: 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
+ E DYLFK ++IGDS VGKS LL RFA D + TIGV+F R I + K IK QI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGN 125
WDTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+ + S + +LVG
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 126 KSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
K DLT + V+ K A++ G+ F+ETSA NVE +F+ M +I +
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 171
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 111/169 (65%)
Query: 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
E D LFK ++IGDS VGKS LL RFA D + TIGV+F R I + K IK QIW
Sbjct: 1 PEYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
DTAGQERFR ITSSYYRGA G ++VYD+T + +F N K+WL+E+ + S + +LVGNK
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 120
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
DLT + V+ K A++ G+ F+ETSA NVE +F+ M +I +
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 108/167 (64%)
Query: 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
E D+LFK ++IG++ GKS LL +F +F+ DS TIGVEF + I VG K +K QIW
Sbjct: 6 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
DTAGQERFR++T SYYRGA GALLVYDIT R T+ WL + R S + I+L GNK
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 125
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
DL REV E A+ L F+ETSA+ +VE+AF+Q +I
Sbjct: 126 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 107/167 (64%)
Query: 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
E D+LFK ++IG++ GKS LL +F +F+ DS TIGVEF + I VG K +K QIW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
DTAG ERFR++T SYYRGA GALLVYDIT R T+ WL + R S + I+L GNK
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
DL REV E A+ L F+ETSA+ +VE+AF+Q +I
Sbjct: 123 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 107/162 (66%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K ++IGDS VGKS LL RFA D + TIGV+F R I + K IK QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133
FR ITSSYYRGA G ++VYD+T + +F N K+WL+E+ + S + +LVGNK DLT +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 134 EVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
V+ K A++ G+ F+ETSA NVE +F+ M +I +
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 162
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
GD DE+ D+LFK V++GD++VGK+ ++ RF F TIGV+F + + + K +
Sbjct: 20 GDP-DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV 78
Query: 62 KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV 121
K QIWDTAGQERFR IT SYYR A GA+L YDIT+R++F + W+ ++R++ S + +
Sbjct: 79 KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL 138
Query: 122 LVGNKSDLTHSREVNEEEGKILAET-EGLYFMETSAMQNLNVEDAFLQMINQI 173
L+GNKSDL+ REV+ E + LAE + L +ETSA + NVE+AFL++ ++
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 5/188 (2%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
G SYD + K ++IGDS VGKS LL RF D+F TIG++F + + + K +
Sbjct: 14 GKSYDS----IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV 69
Query: 62 KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV 121
K Q+WDTAGQERFR IT++YYRGA+G +LVYD+T TF N K+W + + E + ++
Sbjct: 70 KLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLL 129
Query: 122 LVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
LVGNKSD+ +R V ++G+ LA+ G+ F+E+SA + NV + F + I +
Sbjct: 130 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK 188
Query: 182 LCAKMNDK 189
L N K
Sbjct: 189 LVGVGNGK 196
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 113/179 (63%), Gaps = 9/179 (5%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
DY+FK ++IG+S+VGK++ L R+A D F T+G++F + + DK IK QIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQER+R IT++YYRGA+G LL+YDI + +F + W +++ + ++LVGNK DL
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMND 188
R V E+G+ LA+ G F E SA +N+NV+ F ++++ I C KMN+
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI---------CEKMNE 189
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
D + K ++IGDS VGKS LL RF D+F TIG++F + + + K +K QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQERFR IT++YYRGA+G +LVYDIT TF N K+W + + E + ++LVGNKSD+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
+R V ++G+ LA+ G+ F+E+SA + NV + F + I +
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 115/176 (65%), Gaps = 4/176 (2%)
Query: 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW 66
E+ D+LFK V+IG++ VGK+ L+ RF + F TIGV+F + + + + +K QIW
Sbjct: 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126
DTAGQERFR+IT SYYR A +L YDIT +F +WLRE+ ++ S+ + VLVGNK
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL----QMINQIHQTTI 178
DL REV+++ + +E + +Y++ETSA ++ NVE FL ++I++ Q T+
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTL 196
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 114/179 (63%), Gaps = 9/179 (5%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
DY+FK ++IG+S+VGK++ L R+A D F T+G++F + + +K +K QIWDTA
Sbjct: 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA 80
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQER+R IT++YYRGA+G +L+YDIT +F + W +++ + ++LVGNK D+
Sbjct: 81 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMND 188
R V E+G++LAE G F E SA +N++V AF ++++ I C KM+D
Sbjct: 141 EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI---------CDKMSD 190
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
D + K ++IGDS VGKS LL RF D+F TIG++F + + + K +K QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQERFR IT++YYRGA G +LVYDIT TF N K+W + + E + ++LVGNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
+R V ++G+ LA+ G+ F+E+SA + NV + F + I +
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 107/164 (65%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
DY+FK ++IG+S+VGK++ L R+A D F T+G++F + I DK IK QIWDTA
Sbjct: 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQER+R IT++YYRGA+G +L+YDIT +F + W +++ + ++LVGNK D+
Sbjct: 63 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R V+ E G+ LA+ G F E SA N+NV+ F ++++ I
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
D+LFK ++IGDS VGKS+LL RFA + F TIGV+F R + + + +K QIWDTA
Sbjct: 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQERFR ITS+YYRG G ++VYD+T +F N K+WL E+ + C I LVGNK+D
Sbjct: 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRI-LVGNKNDD 125
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
+ V E+ A G+ ETSA +N+NVE+ F
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
+ K ++IGDS VGKS LL RF D+F TIG++F + + + K +K Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131
ERFR IT++YYRGA+G +LVYD+T TF N K+W + + E + ++LVGNKSD+
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
+R V ++G+ LA+ G+ F+E+SA + NV + F + I +
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 106/167 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+SAVGKS+L+ RF + +F + TIG F +++ + D +K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT + TF K W++EL+ S + I L GNK+DL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQ 179
R V EE + A+ L FMETSA +NV D FL + ++ ++ Q
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 175
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
D + K ++IGDS VGKS LL RF D+F TIG++F + + + K +K Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQERFR IT++YYRGA G +LVYD+T TF N K+W + + E + ++LVGNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
+R V ++G+ LA+ G+ F+E+SA + NV + F + I +
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 106/162 (65%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD GKS+L+ RF +D+F + TIG F + + V D +K +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133
+ ++ YYRGA A++V+D+T +A+FE KKW++EL+ + M + L GNKSDL +R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 134 EVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
+V E+ + A+ GL+FMETSA NV++ F ++ ++ +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 102/164 (62%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K ++GD+ VGKS+++ RF D F + PTIG F + ++ ++L K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFRA+ YYRG+ A++VYDIT+ TF K W+RELR+ + + + GNK DLT
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
REV E + K A++ F+ETSA +N+ + F+++ +I T
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 169
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 111/171 (64%), Gaps = 1/171 (0%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDT 68
D FK +++GDS VGK+ LL RF F + T+G++F + + V +K Q+WDT
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 69 AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD 128
AGQERFR++T +YYR A LL+YD+T +A+F+N + WL E+ E+ +A++L+GNK D
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQ 179
H R V E+G+ LA+ GL FMETSA LNV+ AF + ++ + +++
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
D+ + ++IG VGK++L+ RF D F K T+GV+F + + + K I+ QIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
GQERF +ITS+YYR A G +LVYDIT++ TF++ KW++ + ++ S ++LVGNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 130 THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
RE+ ++G+ A + G+ F E SA N NV++ FL++++ I
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 101/164 (61%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K ++GD+ VGKS+++ RF D F + PTIG F + ++ ++L K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFRA+ YYRG+ A++VYDIT+ TF K W+RELR+ + + + GNK DLT
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
REV E + K A++ F+ETSA +N+ + F+++ +I T
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 102/164 (62%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69
DY FK ++IG+S+VGK++ L R+A D F T+G++F + I DK IK QIWDTA
Sbjct: 6 DYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 65
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129
G ER+R IT++YYRGA G +L YDIT +F + W +++ + ++LVGNK D
Sbjct: 66 GLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDX 125
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R V+ E G+ LA+ G F E SA N+NV+ F ++++ I
Sbjct: 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 102/161 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K ++GD+ VGKS+++ RF +D F + PTIG F + + G++L K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RF ++ YYRG+ A++VYDIT++ +F KKW++EL+E + + + GNK DL+
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
REV ++ K AE+ G +ETSA +N+E+ F + QI
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 3/163 (1%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++G++AVGKS+++ RF ++F + +PTIG F + + + + +K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH-- 131
F ++ YYR A AL+VYD+T+ +F + W++EL E S + I LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 132 -SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V EEG+ LAE +GL F ETSA NV D FL + +I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 104/163 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+SAVGKS+L+ RF + +F + TIG F + + + D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT +F K W++EL+ S + I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V+ +E + A+ L FMETSA ++NV + F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 104/163 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+SAVGKS+L+ RF + +F + TIG F + + + D +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT +F K W++EL+ S + I L GNK+DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V+ +E + A+ L FMETSA ++NV + F+ + ++ +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 100/161 (62%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+SAVGKS+L+ RF + +F + TIG F + + + D +K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT TF K W++EL+ S + I L GNK+DL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R V +E + A+ L FMETSA +NV + F+ + ++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+S VGKS+L+ RF + +F + TIG F + + + D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT +F K W++EL+ S + I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V+ +E + A+ L FMETSA ++NV + F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 102/172 (59%), Gaps = 2/172 (1%)
Query: 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQI 65
DE+ K ++IG+S VGKS+LL RF D F + TIGV+F + I V K I
Sbjct: 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVG 124
WDTAGQERFR +T SYYRGA G +LVYD+TRR TF WL EL +C+ + + LVG
Sbjct: 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 125 NKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
NK D +REV+ EG A F+E SA V+ AF +++ +I QT
Sbjct: 129 NKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQT 179
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+S VGKS+L+ RF + +F + TIG F + + + D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT +F K W++EL+ S + I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V+ +E + A+ L FMETSA ++NV + F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+S VGKS+L+ RF + +F + TIG F + + + D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT +F K W++EL+ S + I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V+ +E + A+ L FMETSA ++NV + F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+S VGKS+L+ RF + +F + TIG F + + + D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT +F K W++EL+ S + I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V+ +E + A+ L FMETSA ++NV + F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+S VGKS+L+ RF + +F + TIG F + + + D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT +F K W++EL+ S + I L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V+ +E + A+ L FMETSA ++NV + F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 99/161 (61%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+SAVGKS+L+ RF + +F + TIG F + + + D +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT TF K W++EL+ S + I L GNK+DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R V +E + A+ L FMETSA +NV + F+ + ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 103/163 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+SAVGKS+L+ RF + +F + TIG F + + + D +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT +F K W++EL+ S + I L GNK+DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V+ +E + A+ L FMETSA ++NV + F+ + ++ +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 99/161 (61%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+SAVGKS+L+ RF + +F + TI F + + + D +K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT TF K W++EL+ S + I L GNK+DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R V +E + A+ L FMETSA +NV + F+ + ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 136 bits (343), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 101/163 (61%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++G+SAVGKS+L+ RF + +F + TIG F + + + D +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
R+ ++ YYRGA A++VYDIT +F K W++EL+ S + I L GNK+DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V+ +E + A+ L F ETSA + NV + F + ++ +
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 102/154 (66%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V +G+ +VGK++L++RF D F + TIG++F + + + D+ I+ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFR++ SY R + A++VYDIT +F+ T KW+ ++R S + I+LVGNK+DL
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
R+V+ EEG+ A+ + F+ETSA NV+ F
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 102/154 (66%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V +G+ +VGK++L++RF D F + TIG++F + + + D+ ++ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFR++ SY R + A++VYDIT +F T KW+ ++R S + I+LVGNK+DL+
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
R+V+ EEG+ A+ + F+ETSA NV+ F
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 101/166 (60%)
Query: 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
Y FK V++G+ VGK++L+ R+ ++F T+G F + + +G K + IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
QERF A+ YYR + GA+LVYDIT +F+ K W++ELR+ + + + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
R V+ +E + AE+ G TSA QN +E+ FL + ++ +T
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 101/154 (65%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V +G+ +VGK++L++RF D F + TIG++F + + + D+ ++ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFR++ SY R + A++VYDIT +F+ T KW+ ++R S + I+LVGNK+DL
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
R++ EEG+ A+ + F+ETSA NV+ F
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 102/154 (66%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V +G+ +VGK++L++RF D F + TIG++F + + + D+ ++ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFR++ SY R + A++VYDIT +F+ T KW+ ++R S + I+LVGNK+DL
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
R+V+ EEG+ A+ + F+ETSA NV+ F
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 81/115 (70%)
Query: 16 VMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75
++IGDS VGKS LL RFA D + TIGV+F R I + K IK QIWDTAGQERFR
Sbjct: 2 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
ITSSYYRGA G ++VYD+T + +F N K+WL+E+ + S + +LVGNK DLT
Sbjct: 62 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 116
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 101/154 (65%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V +G+ +VGK++L++RF D F + TIG++F + + + D+ I+ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFR++ SY R + A++VYDIT +F+ T KW+ ++R S + I+LVGNK+DL
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
R+V+ EEG+ A+ + F+ETSA NV+ F
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 100/166 (60%)
Query: 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
Y FK V++G+ VGK++L+ R+ ++F T+ F + + +G K + IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
QERF A+ YYR + GA+LVYDIT +F+ K W++ELR+ + + + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
R V+ +E + AE+ G TSA QN +E+ FL + ++ +T
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 22/230 (9%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNI------- 54
G D + DYL K + +GDS VGK+ L R+ ++F T+G++F + +
Sbjct: 1 GSMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 55 -RVGDKLIKA--QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
K K Q+WDTAG ERFR++T++++R A+G LL++D+T + +F N + W+ +L+
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 120
Query: 112 --EFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
+C + IVL+GNK+DL REVNE + + LAE G+ + ETSA NVE + +
Sbjct: 121 ANAYCENP-DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 170 INQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSC 219
++ I + + C + T N N G +D E A K+ +C
Sbjct: 180 LDLIMK---RMEKCVEKTQVPDTVNGGNSG------KLDGEKPAEKKCAC 220
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 100/166 (60%)
Query: 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
Y FK V++G+ VGK++L+ R+ ++F T+ F + + +G K + IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130
QERF A+ YYR + GA+LVYDIT +F+ K W++ELR+ + + + +VGNK DL
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
R V+ +E + AE+ G TSA QN +E+ FL + ++ +T
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 184
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 101/154 (65%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V +G+ +VGK++L++RF D F + TIG++F + + + D+ ++ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFR++ SY R + A++VYDIT +F+ T KW+ ++R S + I+LVGNK+DL
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
R+V+ EEG+ A+ + F+ETSA NV+ F
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 98/154 (63%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
+K V +G+ AVGK+++++RF D F + + TIG++F + + + + ++ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFR++ SY R + A++VYDIT R +FENT KW++++ + I LVGNK+DL
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
R+V EEG A+ F ETSA N++ F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 101/154 (65%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V +G+ +VGK++L++RF D F + TIG++F + + + D+ ++ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFR++ SY R + A++VYDIT +F+ T KW+ ++R S + I+LVGNK+DL
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
R+V+ EEG+ A+ + F+ETSA NV+ F
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 108/178 (60%), Gaps = 13/178 (7%)
Query: 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-------- 59
+ DYL K + +GDS VGK+ L R+ ++F T+G++F + + +
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 60 --LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR--EFCS 115
+ Q+WDTAGQERFR++T++++R A+G LL++D+T + +F N + W+ +L+ +C
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 116 SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
+ IVL+GNK+DL REVNE + + LA+ G+ + ETSA NVE A +++ I
Sbjct: 141 NP-DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 110/186 (59%), Gaps = 13/186 (6%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-- 59
G D + DYL K + +GDS VGK+ L R+ ++F T+G++F + + +
Sbjct: 1 GSMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 60 --------LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
+ Q+WDTAG ERFR++T++++R A+G LL++D+T + +F N + W+ +L+
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 120
Query: 112 --EFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
+C + IVL+GNK+DL REVNE + + LAE G+ + ETSA NVE + +
Sbjct: 121 ANAYCENP-DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 170 INQIHQ 175
++ I +
Sbjct: 180 LDLIMK 185
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 102/171 (59%), Gaps = 6/171 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
+K V+ GD+AVGKS+ L R ++EFR + T+GV+F + + V + Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
RFR+I SY+R A G LL+YD+T +F N ++W+ + + + I+LVGNK+D+ +
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 133 REVNEEE------GKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTT 177
++ G+ LA T G F ETSA N+ +A L + ++ + T
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 111/195 (56%), Gaps = 16/195 (8%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-- 59
G D + DYL K + +GDS VGK+ L R+ ++F T+G++F + + +
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 60 --------LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
+ Q+WDTAG ERFR++T++++R A G LL +D+T + +F N + W +L+
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 112 --EFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE---DAF 166
+C + IVL+GNK+DL REVNE + + LAE G+ + ETSA NVE +
Sbjct: 121 ANAYCENP-DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 167 LQMINQIHQTTIQKS 181
L +I + + ++K+
Sbjct: 180 LDLIXKRXEKCVEKT 194
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 111/195 (56%), Gaps = 16/195 (8%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-- 59
G D + DYL K + +GDS VGK+ L R+ ++F T+G++F + + +
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 60 --------LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
+ Q+WDTAG ERFR++T++++R A G LL +D+T + +F N + W +L+
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 112 --EFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE---DAF 166
+C + IVL+GNK+DL REVNE + + LAE G+ + ETSA NVE +
Sbjct: 121 ANAYCENP-DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETL 179
Query: 167 LQMINQIHQTTIQKS 181
L +I + + ++K+
Sbjct: 180 LDLIXKRXEKCVEKT 194
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 111/194 (57%), Gaps = 14/194 (7%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNI------- 54
G D + DYL K + +GDS VGK+++L ++ +F T+G++F + +
Sbjct: 1 GSMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGP 60
Query: 55 --RVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111
VG + I Q+WDTAG ERFR++T++++R A+G LL++D+T +F N + W+ +L+
Sbjct: 61 DGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120
Query: 112 EFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA---FL 167
S IVL GNKSDL R V EEE + LAE G+ + ETSA N+ A L
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180
Query: 168 QMINQIHQTTIQKS 181
+I + + ++ KS
Sbjct: 181 DLIMKRMERSVDKS 194
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +++GD VGKS+L++R+ ++F + TIGVEF R++ V + + QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKS 127
ERF+++ + +YRGA LL + + R +FEN W +E + V++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 128 DLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQI 173
D R+V EE + G Y ++ETSA + NV AF + + Q+
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
LFK +++GD VGKS+L++R+ ++F TIGVEF +++ V + QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKS 127
ERFR++ + +YRG+ LL + + +F+N W +E + V++GNK+
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 128 DLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQIHQT 176
D+ R+V+ EE + + G Y + ETSA + NV AF + + +I T
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILAT 179
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 98/162 (60%), Gaps = 7/162 (4%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAG 70
+ K +++GDS VGK++L+ R+ D++ K TIG +F + + V GDK+ Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNK 126
QERF+++ ++YRGA +LVYD+T ++FEN K W E V++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 127 SDLTHSRE-VNEEEGKILAETEG-LYFMETSAMQNLNVEDAF 166
D S++ V+E+ + LA++ G + TSA +NV+ AF
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++G+ AVGKS+++ R+ + F D K TIGV+F R I+V D+ ++ +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
F AIT +YYRGA +LV+ T R +FE W RE + LV NK DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLDD 124
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
+ EE + LA+ L F TS ++LNV + F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
LFK +++GD VGKS+L++R+ ++F TIGVEF +++ V + QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKS 127
ERFR++ + +YRG+ LL + + +F+N W +E + V++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 128 DLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQIHQT 176
D++ R+V+ EE + G Y + ETSA NV AF + + ++ T
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
LFK +++GD VGKS+L++R+ ++F TIGVEF +++ V + QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKS 127
ERFR++ + +YRG+ LL + + +F+N W +E + V++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 128 DLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQMINQIHQT 176
D++ R+V+ EE + G Y + ETSA NV AF + + ++ T
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 177
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 5/167 (2%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
+FK ++IGDS VGK+ L RF F ++ TIGV+F R + + + IK Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 72 ERFR-AITSSYYRGALGALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDL 129
ERFR ++ YYR + VYD+T A+F + W+ E ++ ++ + +LVGNK DL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQ---NLNVEDAFLQMINQI 173
+ +V + + A+T + ETSA N +VE F+ + +++
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +++GDS VGK++L++++ +F K TIG +F + + V D+L+ QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS----CMAIVLVGNKS 127
ERF+++ ++YRGA +LV+D+T TF+ W E S V++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
DL + + + + + ETSA + +NVE AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +++GDS VGK++L++++ +F K TIG +F + + V D+L+ QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS----CMAIVLVGNKS 127
ERF+++ ++YRGA +LV+D+T TF+ W E S V++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
DL + + + + + ETSA + +NVE AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 5/167 (2%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
+FK ++IGDS VGK+ L RF F ++ TIGV+F R + + + IK Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 72 ERFR-AITSSYYRGALGALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDL 129
ERFR ++ YYR + VYD T A+F + W+ E ++ ++ + +LVGNK DL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQ---NLNVEDAFLQMINQI 173
+ +V + + A+T ETSA N +VE F + +++
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +++GDS VGK++L++++ +F K TIG +F + + V D+L+ QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS----CMAIVLVGNKS 127
ERF+++ ++YRGA +LV+D+T TF+ W E S V++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
D + + + + + ETSA + +NVE AF
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +++GDS VGK++L++++ +F K TIG +F + + V D+L+ QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS----CMAIVLVGNKS 127
ERF+++ ++YRGA +LV+D+T TF+ W E S V++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
DL + + + + + ETSA + +NVE AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF PT+GVE IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF PT+GVE IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 3/173 (1%)
Query: 1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
M + E FK V++GD GK+ + R EF T+GVE
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63
Query: 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
IK +WDTAGQE+F + YY A A++++D+T R T++N W R+L C + + I
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPI 122
Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
VL GNK D+ R+V + + + + L + + SA N N E FL + ++
Sbjct: 123 VLCGNKVDIK-DRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF T+GVE IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF T+GVE IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF T+GVE IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF T+GVE IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 121
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 122 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF T+GVE IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +M+G VGKS L +F DEF D +PT + + + G++ ++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGQ 72
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
E + AI +Y+R G L V+ IT +F T + + LR + +LVGNKSDL
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
R+V+ EE K AE + ++ETSA NV+ F ++ +I ++ S
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +M+G VGKS L +F DEF D +PT + + + G++ ++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGQ 76
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
E + AI +Y+R G L V+ IT +F T + + LR + +LVGNKSDL
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
R+V+ EE K AE + ++ETSA NV+ F ++ +I ++ S
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +M+G VGKS L +F DEF D +PT + + + G++ ++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGQ 64
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
E + AI +Y+R G L V+ IT +F T + + LR + +LVGNKSDL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
R+V+ EE K AE + ++ETSA NV+ F ++ +I ++ S
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF T+GVE IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++ +D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 40/203 (19%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL------------ 60
+K V++G+S+VGKS+++ R +D F ++ TIG F + + D
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 61 -------------------------IKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT 95
IK IWDTAGQER+ +I YYRGA A++V+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 96 RRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETS 155
T + K W+ +L+ SS I+LV NK D + +V+ E + A+ L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 156 AMQNLNVEDAFLQMINQIHQTTI 178
A N+++ F + +I++ I
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNII 207
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF T+GVE IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
++ + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +M+G VGKS L +F DEF D +PT + + + G++ ++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGL 65
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS--CMAIVLVGNKSDL 129
E + AI +Y+R G LLV+ IT +F T ++ ++ + + +++VGNKSDL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
R+V EE + AE G+ ++ETSA NV+ F ++ +I
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 170
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +M+G VGKS L +F DEF D +PT + + + G++ ++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGL 61
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS--CMAIVLVGNKSDL 129
E + AI +Y+R G LLV+ IT +F T ++ ++ + + +++VGNKSDL
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
R+V EE + AE G+ ++ETSA NV+ F ++ +I
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 166
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG 84
KS L +F + F D PTI + + + + D+ + I DTAGQE F A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 85 ALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL 143
G LLV+ +T R +FE K+ R+ LR ++L+GNK+DL H R+V +EEG+ L
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 144 AETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
A + +ME SA +NV+ AF +++ I +
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF T+GVE IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 130
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 131 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF T+GVE IK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 124
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 125 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 3/173 (1%)
Query: 1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL 60
M + E FK V++GD GK+ + R E T+GVE
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGP 63
Query: 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI 120
IK +WDTAGQE+F + YY A A++++D+T R T++N W R+L C + + I
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPI 122
Query: 121 VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
VL GNK D+ R+V + + + + L + + SA N N E FL + ++
Sbjct: 123 VLCGNKVDIK-DRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF T+GVE IK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK-D 128
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
R+V + + + + L + + SA N N E FL + ++
Sbjct: 129 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +M+G VGKS L +F DEF D +PT + + + G++ ++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGQ 62
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
E + AI +Y+R G L V+ IT +F T + + LR + +LVGNKSDL
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
R+V+ EE K A+ + ++ETSA NV+ F ++ +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNI-RVGDKLIKAQIWDTAGQE 72
K V++G VGK++L +F EF PT VE Y I +G + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPT--VENTYSKIVTLGKDEFHLHLVDTAGQD 83
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTH 131
+ + S+ G G +LVY +T +F+ + ++L E + + +VLVGNK+DL+
Sbjct: 84 EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
REV EGK LAE+ G FME+SA +N + F ++I +I
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L K +M+G VGKS L +F DEF D +PT + + + G++ ++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE-VQIDILDTAGL 64
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLT 130
E + AI +Y+R G L V+ IT +F T + + LR + +LVGNKSDL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
R+V+ EE K AE + ++ETSA NV+ F ++ +I ++ S
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF TIGVE + IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDV--- 120
Query: 133 REVNEEEGKILAET------EGLYFMETSAMQNLNVEDAFLQMINQI 173
+E K+ A+T + L + + SA N N E FL + ++
Sbjct: 121 -----KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF TIGVE + IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDV--- 121
Query: 133 REVNEEEGKILAET------EGLYFMETSAMQNLNVEDAFLQMINQI 173
+E K+ A+T + L + + SA N N E FL + ++
Sbjct: 122 -----KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
FK V++GD GK+ + R EF TIGVE + IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+F + YY A A++++D+T R T++N W R+L C + + IVL GNK D+
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDV--- 128
Query: 133 REVNEEEGKILAET------EGLYFMETSAMQNLNVEDAFLQMINQI 173
+E K+ A+T + L + + SA N N E FL + ++
Sbjct: 129 -----KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI-KAQIWDTAGQ 71
++ + G VGKS+L+ RF + FR PT VE YR + DK I QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT--VEDTYRQVISCDKSICTLQITDTTGS 61
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC--MAIVLVGNKSDL 129
+F A+ +LVY IT R + E K ++ E + I+LVGNK D
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171
+ SREV E + LA T FMETSA N NV++ F +++N
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL-IKAQIWDTAGQ 71
K V++GD A GK++L + FA++ F K TIG++F R I + L + QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKW---LRELREFCSSCMAIVLVGNKSD 128
+ Y GA G LLVYDIT +FEN + W ++++ E + + LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 129 LTHSREVNEEE 139
L H R + E+
Sbjct: 127 LEHMRTIKPEK 137
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 12/181 (6%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
K V +GD AVGK+ +L + ++F D PT+ F+ N+ V +++ +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQ 67
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLT 130
E + + YRGA +L + + +A++EN KKW+ ELR F + + IVLVG K DL
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLR 126
Query: 131 HSREVNEEEGKILAETEG---------LYFMETSAMQNLNVEDAFLQMINQIHQTTIQKS 181
+ + ++ T+G ++E S+ NV+ F I + Q +K
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186
Query: 182 L 182
+
Sbjct: 187 V 187
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
+K V++G VGKS L + ++ F + PTI E +YR V D + I DTAGQ
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 62
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLT 130
E + A+ Y R G L V+ I +FE+ + +++ S + +VLVGNKSDL
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
SR V+ ++ + LA + G+ F+ETSA V+DAF ++ +I +
Sbjct: 123 -SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
+K V++G VGKS L + ++ F + PTI E +YR V D + I DTAGQ
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 62
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLT 130
E + A+ Y R G L V+ I +FE+ + +++ S + +VLVGNK DL
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
SR V+ ++ + LA + G+ F+ETSA V+DAF ++ +I +
Sbjct: 123 -SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
+K V++G VGKS L + ++ F + PTI E +YR V D + I DTAGQ
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLT 130
E + A+ Y R G L V+ I +FE+ ++ +++ S + +VLVGNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
+R V + + LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
+K V++G VGKS L + ++ F + PTI E +YR V D + I DTAGQ
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLT 130
E + A+ Y R G L V+ I +FE+ ++ +++ S + +VLVGNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
+R V + + LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 7/167 (4%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
+K V++G VGKS L +F + F PTI E +YR + V + +I DTAG
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--EDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
E+F A+ Y + G LVY IT ++TF + + LRE LR + + ++LVGNK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTDDVPMILVGNKCDL 120
Query: 130 THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V +E+G+ LA + F+E+SA +NV + F ++ QI++
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 5/165 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
+K V++G VGKS L + ++ F + PTI E +YR V D + I DTAGQ
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLT 130
E + A+ Y R G L V+ I +FE+ ++ +++ S + +VLVGNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V + + LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 122 -GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 7/167 (4%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
+K V++G VGKS L +F + F PTI E +YR + V + +I DTAG
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI--EDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
E+F A+ Y + G LVY IT ++TF + + LRE LR + + ++LVGNK DL
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTDDVPMILVGNKCDL 122
Query: 130 THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V +E+G+ LA + F+E+SA +NV + F ++ QI++
Sbjct: 123 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQ 71
+K V++G VGKS L + ++ F + PTI E +YR V D + I DTAGQ
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLT 130
E + A+ Y R G L V+ I +FE+ ++ +++ S + +VLVGNK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 131 HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
+R V + + LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 122 -ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 7/167 (4%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
+K V++G VGKS L +F + F + PTI E +YR + V + +I DTAG
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI--EDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
E+F A+ Y + G LVY IT ++TF + + LRE LR + + ++LVGNK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDL 120
Query: 130 THSREVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V +E+G+ LA F+E+SA +NV + F ++ QI++
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 7/167 (4%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQ 71
+K V++G VGKS L +F + F PTI E +YR + V + +I DTAG
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--EDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDL 129
E+F A+ Y + G LVY IT ++TF + + LRE LR + + ++LVGNK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDL 120
Query: 130 THSREVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQMINQIHQ 175
R V +E+G+ LA F+E+SA +NV + F ++ QI++
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 128
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 125
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
K V +GD AVGK+ LL + + F D PT+ F+ N+ V + +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQ 66
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLT 130
E + + YRGA +L + + +A++EN +KKW+ EL+ + + IVLVG K DL
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIVLVGTKLDLR 125
Query: 131 HSRE-------------VNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176
++ V EE K L ++E S+ NV+ F I + Q
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPA--YIECSSKSQENVKGVFDAAIRVVLQP 182
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 14/177 (7%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
K V +GD AVGK+ +L + + F D PT+ F+ N+ V + +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQ 64
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLT 130
E + + YRGA +L + + +A++EN KKW+ ELR + + I+LVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLR 123
Query: 131 HSRE----------VNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQIHQT 176
++ + +G+ L + G ++E S+ NV+ F I + Q
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K ++G +VGKS+L +F +F + PTI F + I V + Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHS 132
+ +Y G +LVY +T +FE K +L + + I+LVGNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
R ++ EEGK LAE+ F+E+SA +N D F ++I
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 127
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 125
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 126
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 10/167 (5%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN-IRVGDKLIKAQIWDTAGQE 72
K + G + VGKS L+ RF F + PT+ E YR+ + D+++ +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL--ESTYRHQATIDDEVVSMEILDTAGQE 87
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENT---KKWLRELREFCSSCMAIVLVGNKSDL 129
+ R G +LVYDIT R +FE K L E+++ + ++LVGNK+DL
Sbjct: 88 D-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADL 144
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNL-NVEDAFLQMINQIHQ 175
HSR+V+ EEG+ LA F E SA N+ + F ++ ++ +
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
K V +GD AVGK+ +L + + F D PT+ F+ N+ V + +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQ 64
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLT 130
E + + YRGA LL + + +A++EN KKWL EL+ + + IVLVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPG-IPIVLVGTKLDLR 123
Query: 131 HSRE----------VNEEEGKILAETEG-LYFMETSAMQNLNVEDAF 166
++ + +G+ L + G + ++E S+ NV+ F
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K ++G +VGKS+L +F +F PTI F + I V + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHS 132
+ +Y G +LVY +T +FE K +L + + I+LVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
R ++ EEGK LAE+ F+E+SA +N D F ++I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 1/158 (0%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG-VEFAYRNIRVGDKLIKAQIWDTAGQ 71
+K +IGD VGK+ ++R F + T+G V + +IK +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131
E+ + YY GA GA+L +D+T R T +N +W++E + + IV+ NK D+ +
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169
++++++ + + + + E SA N FL +
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K ++G +VGKS+L +F +F PTI F + I V + Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHS 132
+ +Y G +LVY +T +FE K +L + + I+LVGNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
R ++ EEGK LAE+ F+E+SA +N D F ++I
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 159
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K ++G +VGKS+L +F +F PTI F + I V + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHS 132
+ +Y G +LVY +T +FE K +L + + I+LVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170
R ++ EEGK LAE+ F+E+SA +N D F ++I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83
KS L +F + F D PTI E +Y ++ + ++ + DTAGQE F A+ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTI--EDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 83
Query: 84 GALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
G L+VY +T +A+FE+ ++ + LR ++LV NK DL H R+V ++GK
Sbjct: 84 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 143
Query: 143 LAETEGLYFMETSAM-QNLNVEDAFLQMINQIHQ 175
+A + ++ETSA LNV+ F ++ I Q
Sbjct: 144 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 177
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL ++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL ++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 122
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL ++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 122
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL ++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD GK++LL FA F PT+ E N++V K + IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+ + +Y A LL +D+T +F+N +W E+ FC + I++VG K+DL
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK-VPIIVVGCKTDLRKD 153
Query: 133 R------------EVNEEEGKILAETEG-LYFMETSAMQNLNVEDAF 166
+ V G+ +A + G + ++E SA + NV F
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 19/191 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A++EN + KW E+R C S I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPS-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI---HQ 175
++ E+ +G LA E + + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQP 181
Query: 176 TTIQKSLCAKM 186
T QK C+ +
Sbjct: 182 TRQQKRACSLL 192
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL ++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83
KS L +F + F D PTI E +Y ++ + ++ + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTI--EDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 84 GALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
G L+VY +T +A+FE+ ++ + LR ++LV NK DL H R+V ++GK
Sbjct: 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 143 LAETEGLYFMETSAM-QNLNVEDAFLQMINQIHQ 175
+A + ++ETSA LNV+ F ++ I Q
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRQD 144
Query: 130 THSR---------EVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAF 166
H+R V EEG+ +A ++E SA V + F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTH- 131
+ Y L+ + I + EN +KW E++ FC + + I+LVGNK DL +
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
Query: 132 ---SRE--------VNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
+RE V EG+ +A G + +ME SA V + F
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYR-NIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83
KS L +F + F + PTI E +YR + + ++ + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTI--EDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 84 GALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
G L+VY +T +A+FE+ ++ + LR ++LV NK DL H R+V ++GK
Sbjct: 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 143 LAETEGLYFMETSAM-QNLNVEDAFLQMINQIHQ 175
+A + ++ETSA LNV+ F ++ I Q
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI-KAQIWDTAGQERFRAITSSYYR 83
KS L +F + F D PTI E +Y I D + + I DTAGQE F A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTI--EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMR 79
Query: 84 GALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
G LLV+ I R +F K + LR +VLVGNK+DL R+V E
Sbjct: 80 AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
+ + + E SA LNV++AF Q++ + +
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83
KS L +F + F + PTI E +Y ++ + ++ + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTI--EDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 84 GALGALLVYDITRRATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
G L+VY +T +A+FE+ ++ + LR ++LV NK DL H R+V ++GK
Sbjct: 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148
Query: 143 LAETEGLYFMETSAM-QNLNVEDAFLQMINQIHQ 175
+A + ++ETSA LNV+ F ++ I Q
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD AVGK++L+ + + + + PT F+ + V + ++ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
F + Y LL + + ++F+N ++KW+ E+R C I+LVG +SDL
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-APIILVGTQSDLRED 139
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAF 166
+ V EE K+LA E + ++E SA+ N+++ F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
LA + G+ ++ETSA VEDAF ++ +I Q ++K
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 68
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A++EN + KW E+R C S I+LVG K DL
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPS-TPIILVGTKLDLRD 127
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G LA E + + ++E SA+ ++ F + I +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNKSDL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 74
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ + +++ S + +VLVGNKSDL SR V+ ++ +
Sbjct: 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQD 133
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ F+ETSA V+DAF ++ +I +
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 74
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ + +++ S + +VLVGNKSDL SR V+ ++ +
Sbjct: 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQD 133
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ F+ETSA V+DAF ++ +I +
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNKSDL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 69
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A++EN + KW E+R C S I+LVG K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPS-TPIILVGTKLDLRD 128
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G LA E + + ++E SA+ ++ F + I +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
LA + G+ ++ETSA VEDAF ++ +I Q ++K
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
LA + G+ ++ETSA VEDAF ++ +I Q ++K
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL ++D+F PT+ E +I V K ++ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 127
Query: 130 THSR---------EVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
H+R V EEG+ +A G + +ME SA V + F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D ++ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 17/168 (10%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GDS GK+ LL FA+D F + PT+ E + + + I+ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
+ + Y + L+ +DI+R T ++ KKW E++EFC + ++LVG KSD
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-TKMLLVGCKSDLRTD 126
Query: 129 ------LTHSRE--VNEEEGKILAETEG-LYFMETSAMQNLN-VEDAF 166
L++ R+ V+ ++G +A+ G ++E SA+Q+ N V D F
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++DEF PT+ E +I V K ++ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTHS 132
+ + Y L+ + + + EN +KW+ E++ FC + + I+LV NK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-VPIILVANKKDLRSD 144
Query: 133 REVNEEEGKILAET 146
V E ++ E
Sbjct: 145 EHVRTELARMKQEP 158
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y +L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 123
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 17/168 (10%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GDS GK+ LL FA+D F + PT+ E + + + I+ +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
+ + Y + L+ +DI+R T ++ KKW E++EFC + ++LVG KSD
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-TKMLLVGCKSDLRTD 147
Query: 129 ------LTHSRE--VNEEEGKILAETEG-LYFMETSAMQNLN-VEDAF 166
L++ R+ V+ ++G +A+ G ++E SA+Q+ N V D F
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y +L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 125
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 180
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y +L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y +L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 17/168 (10%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GDS GK+ LL FA+D F + PT+ + + + + I+ +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 83
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
+ + Y + L+ +DI+R T ++ KKW E++EFC + ++LVG KSD
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN-TKMLLVGCKSDLRTD 142
Query: 129 ------LTHSRE--VNEEEGKILAETEG-LYFMETSAMQNLN-VEDAF 166
L++ R+ V+ ++G +A+ G ++E SA+Q+ N V D F
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 80
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 81 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 139
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 140 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 172
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 78
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 79 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 137
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 78
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 79 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 137
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL ++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ FC + + I+LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRQD 124
Query: 130 THSR---------EVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAF 166
H+R V EEG+ +A ++E SA V + F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 91
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +F + + +++ S + +VLVGNK DL +R V+ ++
Sbjct: 92 TGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHE 150
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180
LA++ G+ F+ETSA VEDAF ++ +I Q ++K
Sbjct: 151 LAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL F++D+F PT+ E +I V K ++ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 74 FRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + I + EN +KW E++ F + + I+LVGNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPN-VPIILVGNKKDLRQD 144
Query: 130 THSR---------EVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAF 166
H+R V EEG+ +A ++E SA V + F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + P+I E +YR V D + I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 79
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 80 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 138
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 139 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 171
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 72
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 131
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 69
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 128
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 140
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGN+ DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 89
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 148
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + P+I E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
K+ L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAG+E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAG E + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMR 91
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ + +++ S + +VLVGNK DL SR V+ ++ +
Sbjct: 92 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQD 150
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ F+ETSA V+DAF ++ +I +
Sbjct: 151 LARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ + Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREFRQ 165
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTA QE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 14 KAVMIGDSAVGKSNLLSRFAR--DEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIW--DTA 69
K ++G++ VGKS L+S F +F D T GVE + + D + +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKW---LRELREFCSSCMAIVLVGNK 126
G + ++ S Y+ G A+LV+D++ +FE+ K W L+ R + VLV NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 127 SDLTHSR-EVNEEEGKILAETEGLYFMETSAMQNLNVEDA-FLQMINQIHQ 175
+DL R +V + + A T L F + SA DA FL + ++
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPH-TPILLVGTKLDLRD 121
Query: 132 SREVNE------------EEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTA QE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL F++ E PT+ F++ ++ I +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 81
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y + LL + + R +F+N + KW E++ + + VLVG K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-VLVGLKVDLRK 140
Query: 132 --SREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQI 173
S +V ++EG L + G + ++E S++ + + + F + ++ I
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 185
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL F++ E PT+ F++ ++ I +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 82
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y + LL + + R +F+N + KW E++ + + VLVG K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-VLVGLKVDLRK 141
Query: 132 --SREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQMINQI 173
S +V ++EG L + G + ++E S++ + + + F + ++ I
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C I+LVG K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPH-TPILLVGTKLDLRD 122
Query: 132 SREVNE------------EEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E +G +A E + ++E SA+ ++ F + I +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C I+LVG K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPH-TPILLVGTKLDLRD 122
Query: 132 SREVNE------------EEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E +G +A E + ++E SA+ ++ F + I +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAG E + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMR 78
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 79 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 137
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD----KLIKAQIWDT 68
++ V+IG+ VGKS L + FA +DS + E Y + D +I +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 69 AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKS 127
G+ + + + L+VY IT RA+FE + +LR + + I+LVGNKS
Sbjct: 98 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
DL REV+ EG+ A F+ETSA NV++ F ++ Q+
Sbjct: 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
+ K V++GD AVGK+ LL +A D F + PT+ +A ++ VG K ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL- 129
E + + Y L+ + + A+F+N K +W+ EL+E+ + + +L+G + DL
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-VPFLLIGTQIDLR 135
Query: 130 -----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
+ + E+G+ LA E ++E SA+ ++ F + I I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD----KLIKAQIWDT 68
++ V+IG+ VGKS L + FA +DS + E Y + D +I +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKS 127
G+ + + + L+VY IT RA+FE + +LR + + I+LVGNKS
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
DL REV+ EG+ A F+ETSA NV++ F ++ Q+
Sbjct: 125 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD----KLIKAQIWDT 68
++ V+IG+ VGKS L + FA +DS + E Y + D +I +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKS 127
G+ + + + L+VY IT RA+FE + +LR + + I+LVGNKS
Sbjct: 67 KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
DL REV+ EG+ A F+ETSA NV++ F ++ Q+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71
L++ V++GD VGK++L S FA + R D +G + R + V + + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQER-DLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 72 ERFRAITS--SYYRGALGALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSD 128
E+ S S +G ++VY I R +FE+ + +LR + + I+LVGNK+D
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166
L REV+ EEG+ A F+ETSA NV + F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR 83
KS L + ++ F + PTI E +YR V D + I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMR 73
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSREVNEEEGKI 142
G L V+ I +FE+ ++ +++ S + +VLVGNK DL +R V + +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD 132
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175
LA + G+ ++ETSA VEDAF ++ +I Q
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 89
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 148
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD----KLIKAQIWDT 68
++ V+IG+ VGKS L + FA +DS + E Y + D +I +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKS 127
G+ + + + L+VY IT RA+FE + +LR + + I+LVGNKS
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 128 DLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
DL REV+ EG+ A F+ETSA NV++ F ++ Q+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 121
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 124
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 89
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131
+ + Y L+ + + A+FEN + KW E+R C + I+LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILVGTKLDLRD 148
Query: 132 SREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ E+ +G +A E + ++E SA+ ++ F + I +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 35/194 (18%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + + F + PT+ ++ N+ V K + +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 73 RFRAITSSYYRGALGALLVYDITRR-------------------ATFENTK-KWLRELRE 112
+ + Y +G DIT R A+FEN + KW E+R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 113 FCSSCMAIVLVGNKSDLTHSREVNEE------------EGKILA-ETEGLYFMETSAMQN 159
C + I+LVG K DL ++ E+ +G +A E + ++E SA+
Sbjct: 125 HCPN-TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 160 LNVEDAFLQMINQI 173
++ F + I +
Sbjct: 184 RGLKTVFDEAIRAV 197
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
++ DE L K V++GD AVGK+ LL + + F + PT+ ++ N+ V K +
Sbjct: 145 AENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPV 203
Query: 62 KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAI 120
+WDTAG E + + Y L+ + + A+F + + KW E+R C + I
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PI 262
Query: 121 VLVGNKSDLTHSREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFL 167
+LVG K DL ++ E+ +G +A E + ++E SA+ ++ F
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
Query: 168 QMINQI 173
+ I +
Sbjct: 323 EAIRAV 328
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
++ DE L K V++GD AVGK+ LL + + F + PT+ ++ N+ V K +
Sbjct: 145 AENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPV 203
Query: 62 KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAI 120
+WDTAG E + + Y L+ + + A+F + + KW E+R C + I
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PI 262
Query: 121 VLVGNKSDLTHSREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFL 167
+LVG K DL ++ E+ +G +A E + ++E SA+ ++ F
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
Query: 168 QMINQI 173
+ I +
Sbjct: 323 EAIRAV 328
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI 61
++ DE L K V++GD AVGK+ LL + + F + PT+ ++ N+ V K +
Sbjct: 145 AENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPV 203
Query: 62 KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAI 120
+WDTAG E + + Y L+ + + A+F + + KW E+R C + I
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PI 262
Query: 121 VLVGNKSDLTHSREVNEE------------EGKILA-ETEGLYFMETSAMQNLNVEDAFL 167
+LVG K DL ++ E+ +G +A E + ++E SA+ ++ F
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
Query: 168 QMINQI 173
+ I +
Sbjct: 323 EAIRAV 328
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG 84
KS L +F F PTI +F + I V +I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 85 ALGALLVYDITRRATFENTKKWLRE--LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
G +LVY + + +F++ K +R+ +R + ++LVGNK DL REV+ EG+
Sbjct: 75 GQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA 133
Query: 143 LAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174
LAE G FMETSA V++ F +++ Q++
Sbjct: 134 LAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 14/177 (7%)
Query: 5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK----L 60
+ + D +FK +++G+S VGKS L F + +P + R I V DK L
Sbjct: 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTL 74
Query: 61 IKAQIW---DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC 117
+ IW D G R + + L+V+ +T R +F + L LR
Sbjct: 75 VVYDIWEQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129
Query: 118 -MAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
+ ++LVGNKSDL SREV+ EEG+ LA T +ETSA + N + F + QI
Sbjct: 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 25 KSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLI-KAQIWDTAGQERFRAITSSYYR 83
KS+L+ RF + FR PTI E YR + DK + QI DT G +F A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTI--EDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSIS 78
Query: 84 GALGALLVYDITRRATFENTKKWLRELREFCSSC--MAIVLVGNKSDLTHSREVNEEEGK 141
+LV+ +T + + E + + + S + ++LVGNK D T REV+ E +
Sbjct: 79 KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQ 137
Query: 142 ILAETEGLYFMETSAMQNLNVEDAFLQMIN 171
+A+ FMETSA N NV++ F +++
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD A GK+ LL ++ +F PT+ E ++ V + ++ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH- 131
+ + Y + L+ + I + EN + KW+ E+ FC + I+LVG K DL +
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQG-VPIILVGCKVDLRND 129
Query: 132 -----------SREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAF 166
+ V +EG+ +A+ G + E SA V + F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAG 70
++K +++G VGKS L F E D Y R+I V + ++D
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVE---DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWE 63
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDL 129
Q+ R + ++VY +T + +FE + +LR + + I+LVGNKSDL
Sbjct: 64 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 123
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
SREV+ +EG+ A F+ETSA + NV+ F ++ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAG 70
++K +++G VGKS L F E D Y R+I V + ++D
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVE---DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWE 63
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDL 129
Q+ R + ++VY +T + +FE + +LR + + I+LVGNKSDL
Sbjct: 64 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 123
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
SREV+ +EG+ A F+ETSA + NV+ F ++ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAY-RNIRVGDKLIKAQIWDTAG 70
++K +++G VGKS L F E D Y R+I V + ++D
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVE---DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWE 58
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDL 129
Q+ R + ++VY +T + +FE + +LR + + I+LVGNKSDL
Sbjct: 59 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118
Query: 130 THSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
SREV+ +EG+ A F+ETSA + NV+ F ++ QI
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 123
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 124
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 131
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 125
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 122
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 122
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 122
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 122
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 122
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 124
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 124
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 128
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 128
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 20/175 (11%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTI-GVEFAYRNIRVGDK----LIKAQ 64
D +FK +++G+S VGKS L F + D+ + E Y + DK LI
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFG--GLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYD 67
Query: 65 IW---DTAG--QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-M 118
IW D G Q+ ++ L+V+ +T R +F + L LR +
Sbjct: 68 IWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 120
Query: 119 AIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++LVGNKSDL SREV+ EEG+ LA T +ETSA + N + F + QI
Sbjct: 121 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 16/160 (10%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD GK+ +L A+D + PT+ + + ++ ++ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 71
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
+ + Y + LL +DI+R T ++ KKW E+ ++C S ++L+G K+D
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRVLLIGCKTDLRTD 130
Query: 129 ------LTHSRE--VNEEEGKILAETEGL-YFMETSAMQN 159
L+H ++ ++ E+G +A+ G ++E SA +
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 170
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD AVGK+ LL + ++F + P + +A + +G + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL--- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 122
Query: 130 ---------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 16/160 (10%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD GK+ +L A+D + PT+ + + ++ ++ +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 70
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
+ + Y + LL +DI+R T ++ KKW E+ ++C S ++L+G K+D
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRVLLIGCKTDLRTD 129
Query: 129 ------LTHSRE--VNEEEGKILAETEGL-YFMETSAMQN 159
L+H ++ ++ E+G +A+ G ++E SA +
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 169
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK----LIKAQIWD 67
+FK +++G+S VGKS L F + + + R I V DK LI IW+
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWE 60
Query: 68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSC-MAIVLVGNK 126
+ + + L+V+ +T R +F + L LR + ++LVGNK
Sbjct: 61 QGDAGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118
Query: 127 SDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173
SDL SREV+ EEG+ LA T +ETSA + N + F + QI
Sbjct: 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++ + PT+ +A + +G + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 16/158 (10%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
K V++GD GK+ +L A+D + PT+ + + ++ ++ +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 87
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSD---- 128
+ + Y + LL +DI+R T ++ KKW E+ ++C S ++L+G K+D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRVLLIGCKTDLRTD 146
Query: 129 ------LTHSRE--VNEEEGKILAETEGL-YFMETSAM 157
L+H ++ ++ E+G +A+ G ++E SA
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 125
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72
K V++GD AVGK+ LL + ++F + PT+ +A + +G + ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 62
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDL-- 129
+ + Y L+ + + ++FEN K KW+ E+ C +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRD 121
Query: 130 ----------THSREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAFLQMI 170
+ + E + LA + + + ++E SA+ +++ F + I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 17 MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
++G GK+ ++ A +F D PT+G F R + G+ IK IWD GQ RFR+
Sbjct: 27 LVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQPRFRS 82
Query: 77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREV 135
+ Y RG + + D R E ++ L L + + ++++GNK DL ++
Sbjct: 83 MWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNA--- 139
Query: 136 NEEEGKILAETEGLYFMETSAMQN 159
L E + + M SA+Q+
Sbjct: 140 -------LDEKQLIEKMNLSAIQD 156
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 17 MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
++G GK+ ++ A +F D PT+G F R I G+ IK +WD GQ RFR+
Sbjct: 27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPRFRS 82
Query: 77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREV 135
+ Y RG + + D + E +K L L + + ++++GNK DL +
Sbjct: 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--- 139
Query: 136 NEEEGKILAETEGLYFMETSAMQN 159
L E E + M SA+Q+
Sbjct: 140 -------LDEKELIEKMNLSAIQD 156
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 17 MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
++G GK+ ++ A +F D PT+G F R I G+ IK +WD GQ RFR+
Sbjct: 36 LVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPRFRS 91
Query: 77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREV 135
+ Y RG + + D + E +K L L + + ++++GNK DL +
Sbjct: 92 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--- 148
Query: 136 NEEEGKILAETEGLYFMETSAMQN 159
L E E + M SA+Q+
Sbjct: 149 -------LDEKELIEKMNLSAIQD 165
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + + + + PT+G Y+N+ K +WD
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 374
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
GQ++ R + YY G G + V D R + ++ L RE+R+ AI+L+
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 428
Query: 124 -GNKSDLTHSREVNEEEGKI 142
NK DL + + +E + K+
Sbjct: 429 FANKQDLPDAMKPHEIQEKL 448
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + + + + PT+G Y+N+ K +WD
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 65
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
GQ++ R + YY G G + V D R + ++ L RE+R+ AI+L+
Sbjct: 66 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 119
Query: 124 -GNKSDLTHSREVNEEEGKI 142
NK DL + + +E + K+
Sbjct: 120 FANKQDLPDAMKPHEIQEKL 139
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + + + + PT+G Y+N+ K +WD
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 52
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
GQ++ R + YY G G + V D R + ++ L RE+R+ AI+L+
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 106
Query: 124 -GNKSDLTHSREVNEEEGKI 142
NK DL + + +E + K+
Sbjct: 107 FANKQDLPDAMKPHEIQEKL 126
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + + + + PT+G Y+N+ K +WD
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 52
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
GQ++ R + YY G G + V D R + ++ L RE+R+ AI+L+
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 106
Query: 124 -GNKSDLTHSREVNEEEGKI 142
NK DL + + +E + K+
Sbjct: 107 FANKQDLPDAMKPHEIQEKL 126
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + + + + PT+G Y+N+ K +WD
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 64
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
GQ++ R + YY G G + V D R + ++ L RE+R+ AI+L+
Sbjct: 65 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 118
Query: 124 -GNKSDLTHSREVNEEEGKI 142
NK DL + + +E + K+
Sbjct: 119 FANKQDLPDAMKPHEIQEKL 138
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + + + + PT+G Y+N+ K +WD
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 54
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
G ++ R + YY G G + V D R + ++ L RE+R+ AI+L+
Sbjct: 55 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 108
Query: 124 -GNKSDLTHSREVNEEEGKI 142
NK DL + + +E + K+
Sbjct: 109 FANKQDLPDAMKPHEIQEKL 128
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + + + + PT+G Y+N+ K +WD
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 55
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
G ++ R + YY G G + V D R + ++ L RE+R+ AI+L+
Sbjct: 56 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 109
Query: 124 -GNKSDLTHSREVNEEEGKI 142
NK DL + + +E + K+
Sbjct: 110 FANKQDLPDAMKPHEIQEKL 129
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + + + + PT+G Y+N+ K +WD
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVG 65
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL------RELREFCSSCMAIVLV 123
G ++ R + YY G G + V D R + ++ L RE+R+ AI+L+
Sbjct: 66 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD------AIILI 119
Query: 124 -GNKSDLTHSREVNEEEGKI 142
NK DL + + +E + K+
Sbjct: 120 FANKQDLPDAMKPHEIQEKL 139
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTAG 70
+ + +G A GK+ +L + + + + PT+G Y+N+ K +WD G
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNV-------KFNVWDVGG 53
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSDL 129
Q++ R + YY G G + V D R + ++ L + AI+L+ NK DL
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113
Query: 130 THSREVNEEEGKI 142
+ + +E + K+
Sbjct: 114 PDAXKPHEIQEKL 126
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + E + + PTIG Y+NI +WD
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNICF-------TVWDVG 69
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLR------ELREFCSSCMAIVLV 123
GQ+R R + Y++ G + V D R + L+ ELR+ ++L
Sbjct: 70 GQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRD-----AVLLLF 124
Query: 124 GNKSDLTHSREVNEEEGKI 142
NK DL ++ ++E K+
Sbjct: 125 ANKQDLPNAMAISEMTDKL 143
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
+ +M+G GK+ +L + E + + PTIG Y+NI +WD
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVETVQYKNISF-------TVWDVG 52
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVGNKSD 128
GQ+R R++ YYR G + V D R+ ++ + R L E A ++ NK D
Sbjct: 53 GQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 112
Query: 129 LTHSREVNE 137
L + E
Sbjct: 113 LPEAMSAAE 121
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+++L + E + + PTIG Y+NI +WD
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVG 69
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
GQ++ R + YY+ + V D R ++ L ++ AI+LV NK D
Sbjct: 70 GQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 129 LTHSREVNEEEGKILAET 146
L + ++E K+ +T
Sbjct: 130 LPQAMSISEVTEKLGLQT 147
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTAG 70
+ +M+G GK+ +L + E + + PTIG Y+NI +WD G
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVETVQYKNISF-------TVWDVGG 70
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVGNKSDL 129
Q+R R++ YYR G + V D R+ ++ + R L E A ++ NK DL
Sbjct: 71 QDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDL 130
Query: 130 THSREVNE 137
+ E
Sbjct: 131 PEAMSAAE 138
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + E + + PTIG Y+NI +WD
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNICF-------TVWDVG 81
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
GQ++ R + Y++ G + V D R + + L+++ + A++LV NK D
Sbjct: 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 129 LTHSREVNEEEGKILAE---TEGLYFMETSAMQNLNVEDAF 166
+ ++ V+E K+ + + Y T A Q + D
Sbjct: 142 MPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG-----VEFAYRNIRVGDKLIKAQIWDT 68
+ +M+G A GK+ +L + E + + PTIG VEF RNI +WD
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVETVEF--RNISF-------TVWDV 68
Query: 69 AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKS 127
GQ++ R + YY G + V D R ++ ++ L + AI+LV NK
Sbjct: 69 GGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQ 128
Query: 128 DLTHSREVNEEEGKILAET--EGLYFMETS 155
DL ++ E K+ T E +F++++
Sbjct: 129 DLPNAMSAAEVTEKLHLNTIRERNWFIQST 158
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTA 69
+ +M+G GK+ +L + E + + PTIG Y+NI +WD
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVETVQYKNISF-------TVWDVG 69
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
GQ+R R++ YYR G + V D R+ ++ ++ + A+ LV NK D
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQD 129
Query: 129 LTHSREVNE 137
L + E
Sbjct: 130 LPEAMSAAE 138
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + E + + PTIG Y+NI +WD
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVG 52
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSD 128
GQ++ R + Y++ G + V D R E ++ +R L E +++ NK D
Sbjct: 53 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 129 LTHSREVNEEEGKI 142
L ++ E K+
Sbjct: 113 LPNAMNAAEITDKL 126
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTAG 70
+ +M+G A GK+ +L + E + + PTIG Y+NI +WD G
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVGG 69
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSDL 129
Q++ R + Y++ G + V D R E ++ +R L E +++ NK DL
Sbjct: 70 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129
Query: 130 THSREVNEEEGKI 142
++ E K+
Sbjct: 130 PNAMNAAEITDKL 142
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTAG 70
+ +M+G A GK+ +L + E + + PTIG Y+NI +WD G
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVGG 70
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSDL 129
Q++ R + Y++ G + V D R E ++ +R L E +++ NK DL
Sbjct: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
Query: 130 THSREVNEEEGKI 142
++ E K+
Sbjct: 131 PNAMNAAEITDKL 143
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 15/186 (8%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLD---SKPTIGVEFAYRNIRVGDKL---IKAQIWD 67
K ++G++ GK+ LL + + + + D T+G++ I++ DK + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTK-KSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 68 TAGQERFRAITSSYYRGALGALLVYDITR-RATFENTKKWLRELREFCSSCMAIVLVGNK 126
AG+E F + + L VYD+++ +A + K WL ++ SS ++LVG
Sbjct: 63 FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTH 121
Query: 127 SDLTHSREVNEEEGKILAE---TEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLC 183
D++ ++ KI E G + N E L ++ +T I +SL
Sbjct: 122 LDVSDEKQRKACXSKITKELLNKRGFPAIRDYHFVNATEESDALA---KLRKTIINESLN 178
Query: 184 AKMNDK 189
K+ D+
Sbjct: 179 FKIRDQ 184
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73
+ +M+G GK+ +L + E + + PTIG F ++ + I +WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVECVQYCN--ISFTVWDVGGQDR 73
Query: 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR---EFCSSCMAIVLVGNKSDLT 130
R++ YY G + V D R+ ++ ++ + E C++ A ++ NK DL
Sbjct: 74 IRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNA--AWLVFANKQDLP 131
Query: 131 HSREVNE 137
+ E
Sbjct: 132 EAMSAAE 138
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLD---SKPTIGVEFAYRNIRVGDKL---IKAQIWD 67
K ++G++ GK+ LL + + + + D T+G++ I++ DK + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTK-KSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 60
Query: 68 TAGQERFRAITSSYYRGALGALLVYDITR-RATFENTKKWLRELREFCSSCMAIVLVGNK 126
AG+E F + + L VYD+++ +A + K WL ++ SS ++LVG
Sbjct: 61 FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTH 119
Query: 127 SDLTHSREVNEEEGKILAE 145
D++ ++ KI E
Sbjct: 120 LDVSDEKQRKACXSKITKE 138
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 17/151 (11%)
Query: 1 MGDSYDEECDYLF-----KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YR 52
MG S+ + LF + +M+G A GK+ +L + E + + PTIG Y+
Sbjct: 4 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYK 62
Query: 53 NIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT-RRATFENTKKWLRELR 111
NI +WD GQ++ R + Y++ G + V D R E + R L
Sbjct: 63 NISF-------TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 115
Query: 112 EFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142
E +++ NK DL ++ E K+
Sbjct: 116 EDELRDAVLLVFANKQDLPNAMNAAEITDKL 146
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + E + + PTIG Y+NI +WD
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVG 217
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSD 128
GQ++ R + Y++ G + V D R E ++ +R L E +++ NK D
Sbjct: 218 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
Query: 129 LTHS 132
L ++
Sbjct: 278 LPNA 281
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQI 65
C+ K +++G GK+ +L +F +E + + PTIG E +N +
Sbjct: 13 CNQEHKVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVEEIVVKNTHF-------LM 64
Query: 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVG 124
WD GQE R+ ++YY +LV D R TK+ L R L A+++
Sbjct: 65 WDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFA 124
Query: 125 NKSDL 129
NK D+
Sbjct: 125 NKQDM 129
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDT 68
D + +++G GK+ LL + A ++ PT G NI+ V + K +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-----NIKSVQSQGFKLNVWDI 68
Query: 69 AGQERFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKS 127
GQ + R SY+ + V D R FE T ++ L E SC+ +++ NK
Sbjct: 69 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 128
Query: 128 DLTHSREVNE 137
DL + +E
Sbjct: 129 DLLTAAPASE 138
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDT 68
D + +++G GK+ LL + A ++ PT G NI+ V + K +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-----NIKSVQSQGFKLNVWDI 67
Query: 69 AGQERFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKS 127
GQ + R SY+ + V D R FE T ++ L E SC+ +++ NK
Sbjct: 68 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 127
Query: 128 DLTHSREVNE 137
DL + +E
Sbjct: 128 DLLTAAPASE 137
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAG 70
K +++G GK+ +L +F+ +E + + PTIG E N R +WD G
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRF-------LMWDIGG 75
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL 110
QE R+ ++YY ++V D T R T++ L ++
Sbjct: 76 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 115
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAG 70
K +++G GK+ +L +F+ +E + + PTIG E N R +WD G
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRF-------LMWDIGG 74
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKK 105
QE R+ ++YY ++V D T R T++
Sbjct: 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 109
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAG 70
K +++G GK+ +L +F+ +E + + PTIG E N R +WD G
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRF-------LMWDIGG 69
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKK 105
QE R+ ++YY ++V D T R T++
Sbjct: 70 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 104
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDTAGQE 72
+ +++G GK+ LL + A ++ PT G NI+ V + K +WD GQ
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-----NIKSVQSQGFKLNVWDIGGQR 59
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTH 131
+ R SY+ + V D R FE T ++ L E SC+ +++ NK DL
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 119
Query: 132 SREVNE 137
+ +E
Sbjct: 120 AAPASE 125
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAG 70
K +++G GK+ +L +F+ +E + + PTIG E N R +WD G
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRF-------LMWDIGG 69
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKK 105
QE R+ ++YY ++V D T R T++
Sbjct: 70 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 104
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 21/188 (11%)
Query: 1 MGDSYDEECDYLF------KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAY 51
MG+ + D L+ + +++G GK+ +L R E + +KPTIG VE +Y
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY 59
Query: 52 RNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLR-EL 110
+N+++ +WD GQ R YY + V D T + K L L
Sbjct: 60 KNLKL-------NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLML 112
Query: 111 REFCSSCMAIVLVGNKSDLT---HSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167
+E A+++ NK D + EV++E + + + +SA++ + +
Sbjct: 113 QEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLD 172
Query: 168 QMINQIHQ 175
+I+ I +
Sbjct: 173 WLIDVIKE 180
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA---YRNIRVGDKLIKAQIWDTA 69
+ +M+G A GK+ +L + E + + PTIG Y+NI +WD
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISF-------TVWDVG 54
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSD 128
G ++ R + Y++ G + V D R E ++ +R L E +++ NK D
Sbjct: 55 GLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 114
Query: 129 LTHSREVNEEEGKI 142
L ++ E K+
Sbjct: 115 LPNAMNAAEITDKL 128
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDTAGQ 71
+ +M+G GK+ +L +F ++ S PT+G NI+ + + K IWD GQ
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGF-----NIKTLEHRGFKLNIWDVGGQ 70
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR-EFCSSCMAIVLVGNKSDLT 130
+ R+ +Y+ G + V D R ++ ++ L+ L E + +++ NK DL
Sbjct: 71 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 130
Query: 131 HSREVN 136
+ N
Sbjct: 131 GALSSN 136
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDTAGQ 71
+ +M+G GK+ +L +F ++ S PT+G NI+ + + K IWD GQ
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGF-----NIKTLEHRGFKLNIWDVGGQ 72
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR-EFCSSCMAIVLVGNKSDLT 130
+ R+ +Y+ G + V D R ++ ++ L+ L E + +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
Query: 131 HSREVN 136
+ N
Sbjct: 133 GALSCN 138
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDTAGQ 71
+ +M+G GK+ +L +F ++ S PT+G NI+ + + K IWD GQ
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGF-----NIKTLEHRGFKLNIWDVGGQ 72
Query: 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR-EFCSSCMAIVLVGNKSDLT 130
+ R+ +Y+ G + V D R ++ ++ L+ L E + +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
Query: 131 HSREVN 136
+ N
Sbjct: 133 GALSXN 138
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDTAGQE 72
+ +++G GK+ LL + A ++ PT G NI+ V + K +WD G
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-----NIKSVQSQGFKLNVWDIGGLR 59
Query: 73 RFRAITSSYYRGALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTH 131
+ R SY+ + V D R FE T ++ L E SC+ +++ NK DL
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 119
Query: 132 SREVNE 137
+ +E
Sbjct: 120 AAPASE 125
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 17 MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
++G GKS L +F F + P + ++ V + + ++ DTA + R
Sbjct: 26 ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTPRN 84
Query: 77 ITSSYYRGALGALLVYDITRRATFENTKKWLREL----REFCSSCMAIVLVGNKSDLTHS 132
Y A L+VY + R +F+++ +L L +E S A++L GNK D+
Sbjct: 85 -CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL-GNKLDMAQY 142
Query: 133 REVNEEEGKILAETEGLYFMETSAMQNL-NVEDAFLQMINQ 172
R+V + EG LA G F E SA + +V+ F + + +
Sbjct: 143 RQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDTAG 70
+ + +M+G GK+ +L +F ++ S PT+G NI+ + + K IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGF-----NIKTLEHRGFKLNIWDVGG 54
Query: 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR-EFCSSCMAIVLVGNKSDL 129
+ R+ +Y+ G + V D R ++ ++ L+ L E + +++ NK DL
Sbjct: 55 LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 114
Query: 130 THSREVN 136
+ N
Sbjct: 115 PGALSCN 121
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTA 69
+ +++G GK+ +L R E + + PTIG VE Y+N+ K Q+WD
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVTYKNL-------KFQVWDLG 54
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
GQ R YY + V D R +K L + E AI++V NK D
Sbjct: 55 GQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 114
Query: 129 LTHSREVNE 137
+ + +E
Sbjct: 115 MEQAMTPSE 123
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 2 GDSYDEECDYL--FKAVMIGDSAVGKSNLLSRFARDEFR 38
G+ DE DYL F ++ G S VGKS++LSR +E R
Sbjct: 153 GEGIDELVDYLEGFICILAGPSGVGKSSILSRLTGEELR 191
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 24 GKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR-VGDKLIKAQIWDTAGQERFRAITSSYY 82
GK+ +L +F ++ S PT+G NI+ + + K IWD GQ+ R+ +Y+
Sbjct: 30 GKTTILKKFNGEDVDTIS-PTLGF-----NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 83 RGALGALLVYDITRRATFENTKKWLRELR-EFCSSCMAIVLVGNKSDLTHSREVN 136
G + V D R ++ ++ L+ L E + +++ NK DL + N
Sbjct: 84 ESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXN 138
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 14/138 (10%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR---NIR--VGDKLIKA---Q 64
K +IGD GK++LL + + F T G+ + NI+ D +K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 65 IWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVG 124
WD GQE A + + +L+ D T N WLR + ++ IV V
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKSPVIV-VM 157
Query: 125 NKSDLTHSREVNEEEGKI 142
NK D S N E+ KI
Sbjct: 158 NKIDENPS--YNIEQKKI 173
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG--VE-FAYRNIRVGDKLIKAQIWDTA 69
+ +++G GK+ +L R E + + PTIG VE Y+N+ K Q+WD
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVTYKNL-------KFQVWDLG 56
Query: 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLV-GNKSD 128
G R YY + V D R +K L + E AI++V NK D
Sbjct: 57 GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 116
Query: 129 LTHSREVNE 137
+ + +E
Sbjct: 117 MEQAMTSSE 125
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF---AYRNIRVGDKLIKAQIWDTAG 70
+ +++G GK+ +L R E + + PTIG Y+N+ K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVTYKNL-------KFQVWDLGG 60
Query: 71 QERFRAITSSYYRGALGALLVYD 93
R YY + V D
Sbjct: 61 LTSIRPYWRCYYSNTDAVIYVVD 83
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query: 17 MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
++GD+ GKS+L+ RF +++ K Y+ + L+ Q +E A
Sbjct: 12 VLGDARSGKSSLIHRFLTGSYQVLEKTE---SEQYKK----EMLVDGQTHLVLIREEAGA 64
Query: 77 ITSSYYRGALGALLVYDITRRATFENTKKW---LRELREFCSSCMAIVLVGNKSDLTHS- 132
+ + A + V+ + +F+ + L LR +A+ LVG + ++ S
Sbjct: 65 PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 124
Query: 133 -REVNEEEGKIL-AETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCA 184
R V + + L A+ + + ET A LNV+ F ++ ++ Q+ L A
Sbjct: 125 PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query: 17 MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76
++GD+ GKS+L+ RF +++ K Y+ + L+ Q +E A
Sbjct: 12 VLGDARSGKSSLIHRFLTGSYQVLEKTE---SEQYKK----EMLVDGQTHLVLIREEAGA 64
Query: 77 ITSSYYRGALGALLVYDITRRATFENTKKW---LRELREFCSSCMAIVLVGNKSDLTHS- 132
+ + A + V+ + +F+ + L LR +A+ LVG + ++ S
Sbjct: 65 PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 124
Query: 133 -REVNEEEGKIL-AETEGLYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCA 184
R V + + L A+ + + ET A LNV+ F ++ ++ Q+ L A
Sbjct: 125 PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 87 GALLVYDITR--RATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL 143
G LL D++R F++ K++ L + + IV+V K D R + + L
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL 224
Query: 144 AETEGLYFMETSAMQNLNVEDAFLQMINQI 173
++ + L +ETSA N+NV+ AF ++ I
Sbjct: 225 SK-KNLQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 13 FKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70
+A++IG VGKS L++R A+ + +P G+ + + ++VG +L ++ DT G
Sbjct: 121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDRP--GITTSQQWVKVGKEL---ELLDTPG 174
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 158 QNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINID 208
Q L+ ED +QM ++ I++ + DK N + G EII ++
Sbjct: 265 QGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLE 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,025,912
Number of Sequences: 62578
Number of extensions: 221913
Number of successful extensions: 1232
Number of sequences better than 100.0: 346
Number of HSP's better than 100.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 347
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)