Query 027503
Match_columns 222
No_of_seqs 152 out of 1724
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 10:53:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.1E-42 6.8E-47 253.1 21.2 175 6-180 3-178 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 6.3E-40 1.4E-44 240.1 19.4 173 9-181 2-174 (200)
3 KOG0078 GTP-binding protein SE 100.0 2.7E-39 5.9E-44 240.8 22.7 181 2-182 2-182 (207)
4 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.8E-39 6E-44 239.8 21.4 180 4-183 6-185 (222)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1E-38 2.3E-43 233.8 19.3 169 10-178 20-189 (221)
6 KOG0080 GTPase Rab18, small G 100.0 2.5E-38 5.4E-43 224.7 19.4 176 1-177 1-177 (209)
7 PLN03110 Rab GTPase; Provision 100.0 4E-37 8.6E-42 239.7 26.5 181 1-181 1-181 (216)
8 KOG0098 GTPase Rab2, small G p 100.0 1.1E-37 2.4E-42 226.6 20.2 175 9-183 3-177 (216)
9 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-36 3.7E-41 231.0 23.2 172 8-180 2-173 (189)
10 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.9E-36 1.1E-40 231.2 24.1 195 13-220 1-201 (201)
11 KOG0394 Ras-related GTPase [Ge 100.0 3E-36 6.4E-41 218.8 18.9 172 8-179 5-183 (210)
12 cd04120 Rab12 Rab12 subfamily. 100.0 1E-35 2.2E-40 228.8 22.7 167 13-179 1-168 (202)
13 KOG0095 GTPase Rab30, small G 100.0 3.3E-36 7.2E-41 211.5 16.5 179 7-185 2-180 (213)
14 cd04110 Rab35 Rab35 subfamily. 100.0 4.5E-35 9.7E-40 225.5 24.4 170 9-179 3-172 (199)
15 KOG0079 GTP-binding protein H- 100.0 1.8E-36 3.8E-41 212.4 13.8 172 7-179 3-174 (198)
16 KOG0093 GTPase Rab3, small G p 100.0 6.8E-36 1.5E-40 209.3 16.4 177 4-180 13-189 (193)
17 cd04125 RabA_like RabA-like su 100.0 1.8E-34 3.8E-39 220.3 23.8 169 13-181 1-169 (188)
18 cd04111 Rab39 Rab39 subfamily. 100.0 2.4E-34 5.2E-39 223.2 24.8 171 11-181 1-173 (211)
19 KOG0091 GTPase Rab39, small G 100.0 3.3E-35 7.2E-40 209.3 17.1 172 8-179 4-178 (213)
20 KOG0088 GTPase Rab21, small G 100.0 1.2E-35 2.7E-40 210.5 14.4 212 4-221 5-217 (218)
21 cd04144 Ras2 Ras2 subfamily. 100.0 1.5E-34 3.4E-39 221.0 21.5 165 14-179 1-168 (190)
22 cd04126 Rab20 Rab20 subfamily. 100.0 2.8E-34 6.1E-39 223.2 23.0 187 13-220 1-220 (220)
23 cd04122 Rab14 Rab14 subfamily. 100.0 3.7E-34 8.1E-39 214.2 22.8 164 12-175 2-165 (166)
24 cd04112 Rab26 Rab26 subfamily. 100.0 4.2E-34 9.1E-39 218.7 22.6 167 13-179 1-168 (191)
25 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.8E-34 1.7E-38 222.0 24.3 169 8-178 9-192 (232)
26 cd01867 Rab8_Rab10_Rab13_like 100.0 6.7E-34 1.5E-38 213.1 22.9 166 10-175 1-166 (167)
27 PLN03108 Rab family protein; P 100.0 2E-33 4.4E-38 217.9 25.9 171 9-179 3-173 (210)
28 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 8.1E-34 1.7E-38 215.2 21.7 164 9-174 2-180 (182)
29 cd04109 Rab28 Rab28 subfamily. 100.0 1.3E-33 2.8E-38 219.9 22.7 164 13-176 1-168 (215)
30 PTZ00369 Ras-like protein; Pro 100.0 1.9E-33 4E-38 214.8 22.5 168 10-178 3-171 (189)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.8E-33 3.9E-38 211.8 21.7 163 12-175 2-165 (172)
32 cd04133 Rop_like Rop subfamily 100.0 1.2E-33 2.6E-38 213.0 20.8 160 13-174 2-173 (176)
33 cd04127 Rab27A Rab27a subfamil 100.0 2.8E-33 6E-38 212.0 22.8 167 10-176 2-179 (180)
34 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.7E-33 8.1E-38 217.1 23.8 203 13-219 2-219 (222)
35 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4E-33 8.6E-38 208.5 22.6 163 12-174 2-164 (166)
36 KOG0086 GTPase Rab4, small G p 100.0 5.6E-34 1.2E-38 201.0 16.7 179 6-184 3-181 (214)
37 cd04117 Rab15 Rab15 subfamily. 100.0 3.4E-33 7.3E-38 208.1 21.8 160 13-172 1-160 (161)
38 cd01865 Rab3 Rab3 subfamily. 100.0 5.8E-33 1.2E-37 207.6 23.0 163 13-175 2-164 (165)
39 PF00071 Ras: Ras family; Int 100.0 4.7E-33 1E-37 207.2 21.7 161 14-174 1-161 (162)
40 cd01868 Rab11_like Rab11-like. 100.0 7.8E-33 1.7E-37 206.7 22.8 163 11-173 2-164 (165)
41 cd01875 RhoG RhoG subfamily. 100.0 4.2E-33 9.2E-38 213.2 21.7 163 11-175 2-178 (191)
42 cd04131 Rnd Rnd subfamily. Th 100.0 3.9E-33 8.5E-38 210.9 21.1 161 12-174 1-176 (178)
43 cd04119 RJL RJL (RabJ-Like) su 100.0 7.2E-33 1.6E-37 206.9 22.1 162 13-174 1-167 (168)
44 cd01866 Rab2 Rab2 subfamily. 100.0 1.2E-32 2.7E-37 206.4 23.2 167 9-175 1-167 (168)
45 cd01864 Rab19 Rab19 subfamily. 100.0 1.4E-32 3.1E-37 205.3 22.3 163 10-172 1-164 (165)
46 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.9E-32 4E-37 208.0 21.6 163 13-176 1-168 (182)
47 PLN03071 GTP-binding nuclear p 100.0 2.7E-32 5.8E-37 212.8 22.3 164 10-176 11-174 (219)
48 cd04113 Rab4 Rab4 subfamily. 100.0 3.1E-32 6.7E-37 202.6 21.5 160 13-172 1-160 (161)
49 cd04136 Rap_like Rap-like subf 100.0 2.4E-32 5.3E-37 203.4 20.8 160 13-173 2-162 (163)
50 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.7E-32 5.8E-37 205.9 20.6 159 13-173 2-174 (175)
51 cd04118 Rab24 Rab24 subfamily. 100.0 7.5E-32 1.6E-36 206.5 23.3 164 13-177 1-169 (193)
52 smart00175 RAB Rab subfamily o 100.0 1.1E-31 2.3E-36 200.0 22.4 163 13-175 1-163 (164)
53 cd04175 Rap1 Rap1 subgroup. T 100.0 6E-32 1.3E-36 201.7 20.8 162 12-174 1-163 (164)
54 cd04106 Rab23_lke Rab23-like s 100.0 9.2E-32 2E-36 200.1 21.4 159 13-172 1-161 (162)
55 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.6E-31 3.4E-36 200.9 22.6 162 14-175 2-166 (170)
56 cd04116 Rab9 Rab9 subfamily. 100.0 1.6E-31 3.5E-36 200.5 22.3 163 9-172 2-169 (170)
57 cd04176 Rap2 Rap2 subgroup. T 100.0 9.6E-32 2.1E-36 200.4 20.7 161 12-173 1-162 (163)
58 cd04132 Rho4_like Rho4-like su 100.0 1.6E-31 3.4E-36 203.7 22.1 166 13-180 1-173 (187)
59 PLN03118 Rab family protein; P 100.0 6.1E-31 1.3E-35 204.3 25.6 170 6-176 8-179 (211)
60 cd00877 Ran Ran (Ras-related n 100.0 1.6E-31 3.4E-36 200.1 21.4 160 13-175 1-160 (166)
61 cd04134 Rho3 Rho3 subfamily. 100.0 9.5E-32 2.1E-36 205.4 20.3 160 13-174 1-174 (189)
62 smart00173 RAS Ras subfamily o 100.0 2E-31 4.4E-36 198.7 21.2 161 13-174 1-162 (164)
63 cd04124 RabL2 RabL2 subfamily. 100.0 2.4E-31 5.2E-36 198.1 21.5 160 13-176 1-160 (161)
64 cd01861 Rab6 Rab6 subfamily. 100.0 2.7E-31 5.8E-36 197.4 21.6 160 13-172 1-160 (161)
65 KOG0081 GTPase Rab27, small G 100.0 2.7E-33 5.8E-38 198.8 9.9 182 5-186 2-193 (219)
66 cd04140 ARHI_like ARHI subfami 100.0 2.7E-31 5.8E-36 198.6 21.1 158 13-171 2-162 (165)
67 KOG0097 GTPase Rab14, small G 100.0 2.8E-31 6.1E-36 185.3 19.4 181 6-186 5-185 (215)
68 cd01871 Rac1_like Rac1-like su 100.0 2.4E-31 5.1E-36 200.6 20.7 158 13-172 2-173 (174)
69 cd01860 Rab5_related Rab5-rela 100.0 6E-31 1.3E-35 195.9 22.5 162 12-173 1-162 (163)
70 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.4E-31 9.6E-36 198.3 21.7 162 12-173 2-168 (170)
71 cd04138 H_N_K_Ras_like H-Ras/N 100.0 5.3E-31 1.2E-35 195.6 21.5 160 12-173 1-161 (162)
72 cd04145 M_R_Ras_like M-Ras/R-R 100.0 7.5E-31 1.6E-35 195.5 21.6 161 12-173 2-163 (164)
73 cd04142 RRP22 RRP22 subfamily. 100.0 4.1E-31 8.9E-36 203.0 19.9 167 13-179 1-179 (198)
74 cd04123 Rab21 Rab21 subfamily. 100.0 2E-30 4.4E-35 192.5 22.5 161 13-173 1-161 (162)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.7E-30 3.7E-35 193.7 21.4 160 13-173 1-163 (164)
76 smart00176 RAN Ran (Ras-relate 100.0 1.4E-30 2.9E-35 200.1 20.9 156 18-176 1-156 (200)
77 cd01862 Rab7 Rab7 subfamily. 100.0 3.1E-30 6.7E-35 193.7 22.3 164 13-176 1-169 (172)
78 cd04114 Rab30 Rab30 subfamily. 100.0 5.6E-30 1.2E-34 191.8 23.5 166 8-173 3-168 (169)
79 smart00174 RHO Rho (Ras homolo 100.0 1.6E-30 3.6E-35 195.7 19.7 159 15-175 1-173 (174)
80 cd01873 RhoBTB RhoBTB subfamil 100.0 2.8E-30 6.1E-35 197.8 20.0 158 12-172 2-194 (195)
81 cd01863 Rab18 Rab18 subfamily. 100.0 8.7E-30 1.9E-34 189.4 21.5 159 13-172 1-160 (161)
82 cd04146 RERG_RasL11_like RERG/ 100.0 3.3E-30 7.2E-35 192.5 19.0 160 14-174 1-164 (165)
83 cd04143 Rhes_like Rhes_like su 100.0 6.4E-30 1.4E-34 202.3 21.4 160 13-173 1-170 (247)
84 cd04177 RSR1 RSR1 subgroup. R 100.0 1.2E-29 2.6E-34 190.1 21.5 162 12-174 1-164 (168)
85 cd00154 Rab Rab family. Rab G 100.0 1.2E-29 2.6E-34 187.1 21.0 158 13-170 1-158 (159)
86 cd04103 Centaurin_gamma Centau 100.0 6.8E-30 1.5E-34 189.7 19.6 153 13-172 1-157 (158)
87 cd04148 RGK RGK subfamily. Th 100.0 1.1E-29 2.4E-34 198.4 21.2 165 13-179 1-168 (221)
88 cd01892 Miro2 Miro2 subfamily. 100.0 4.5E-30 9.7E-35 192.8 18.3 162 11-174 3-166 (169)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.2E-29 2.6E-34 191.1 20.5 157 13-171 1-171 (173)
90 cd04135 Tc10 TC10 subfamily. 100.0 1.2E-29 2.6E-34 191.0 20.0 159 13-173 1-173 (174)
91 KOG0083 GTPase Rab26/Rab37, sm 100.0 6.3E-32 1.4E-36 186.6 6.5 170 16-185 1-171 (192)
92 cd04139 RalA_RalB RalA/RalB su 100.0 7.6E-29 1.6E-33 184.5 21.6 162 13-175 1-163 (164)
93 cd00876 Ras Ras family. The R 100.0 8.4E-29 1.8E-33 183.4 20.2 158 14-172 1-159 (160)
94 cd04129 Rho2 Rho2 subfamily. 100.0 1.5E-28 3.2E-33 187.5 20.6 164 13-178 2-177 (187)
95 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.2E-28 2.6E-33 187.4 19.2 168 12-182 3-178 (183)
96 cd01870 RhoA_like RhoA-like su 100.0 4E-28 8.7E-33 182.8 20.8 159 13-173 2-174 (175)
97 KOG0395 Ras-related GTPase [Ge 100.0 2.1E-28 4.5E-33 186.7 18.8 164 11-175 2-166 (196)
98 cd04137 RheB Rheb (Ras Homolog 100.0 6.8E-28 1.5E-32 182.5 21.5 163 13-176 2-165 (180)
99 cd04147 Ras_dva Ras-dva subfam 100.0 3.4E-28 7.5E-33 187.0 20.1 161 14-175 1-164 (198)
100 smart00177 ARF ARF-like small 100.0 4.8E-29 1E-33 188.2 14.7 166 1-173 1-173 (175)
101 cd04149 Arf6 Arf6 subfamily. 100.0 2.7E-28 5.8E-33 183.0 17.2 154 11-171 8-167 (168)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 6.5E-29 1.4E-33 185.6 13.5 153 14-171 1-163 (164)
103 PLN00223 ADP-ribosylation fact 100.0 9.4E-28 2E-32 182.0 19.3 159 10-175 15-179 (181)
104 cd00157 Rho Rho (Ras homology) 100.0 1.8E-27 3.9E-32 178.4 20.1 157 13-171 1-170 (171)
105 KOG4252 GTP-binding protein [S 100.0 1.1E-29 2.3E-34 183.9 7.1 176 3-179 11-186 (246)
106 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.5E-27 5.4E-32 182.0 20.8 148 13-160 1-176 (202)
107 cd04158 ARD1 ARD1 subfamily. 100.0 1.2E-27 2.7E-32 179.5 18.6 156 14-176 1-163 (169)
108 cd04150 Arf1_5_like Arf1-Arf5- 100.0 6.5E-28 1.4E-32 179.3 16.9 153 13-171 1-158 (159)
109 PTZ00132 GTP-binding nuclear p 100.0 6.1E-27 1.3E-31 182.3 22.5 166 7-175 4-169 (215)
110 PTZ00133 ADP-ribosylation fact 100.0 6.9E-28 1.5E-32 183.0 15.1 159 11-176 16-180 (182)
111 KOG0393 Ras-related small GTPa 100.0 2.8E-28 6.1E-33 182.6 12.5 167 10-178 2-183 (198)
112 cd04154 Arl2 Arl2 subfamily. 100.0 2.7E-27 5.9E-32 178.2 17.8 156 9-171 11-172 (173)
113 cd01893 Miro1 Miro1 subfamily. 100.0 5.6E-27 1.2E-31 175.4 18.9 160 13-175 1-165 (166)
114 PTZ00099 rab6; Provisional 99.9 5.6E-26 1.2E-30 171.3 20.0 141 35-175 3-143 (176)
115 cd04157 Arl6 Arl6 subfamily. 99.9 9.3E-27 2E-31 173.0 15.3 152 14-171 1-161 (162)
116 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.5E-26 3.2E-31 173.3 15.8 153 14-171 1-166 (167)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.4E-26 3E-31 171.9 15.3 152 14-171 1-159 (160)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.5E-26 5.4E-31 173.2 16.3 154 11-171 14-173 (174)
119 cd04151 Arl1 Arl1 subfamily. 99.9 1.8E-26 3.8E-31 171.2 13.4 152 14-171 1-157 (158)
120 cd00879 Sar1 Sar1 subfamily. 99.9 1.1E-25 2.4E-30 171.8 18.2 156 10-172 17-189 (190)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.9 5.6E-26 1.2E-30 168.4 15.2 151 14-171 1-157 (158)
122 PLN00023 GTP-binding protein; 99.9 1.6E-25 3.5E-30 180.3 18.8 144 6-149 15-189 (334)
123 cd04160 Arfrp1 Arfrp1 subfamil 99.9 8.4E-26 1.8E-30 168.9 16.1 152 14-171 1-166 (167)
124 PF00025 Arf: ADP-ribosylation 99.9 9E-25 2E-29 164.8 18.0 158 9-173 11-175 (175)
125 smart00178 SAR Sar1p-like memb 99.9 9.8E-25 2.1E-29 165.9 17.8 156 10-172 15-183 (184)
126 KOG0073 GTP-binding ADP-ribosy 99.9 1.4E-24 3E-29 155.2 17.3 164 7-177 11-181 (185)
127 cd01897 NOG NOG1 is a nucleola 99.9 7.5E-25 1.6E-29 163.9 16.5 156 13-173 1-167 (168)
128 cd04159 Arl10_like Arl10-like 99.9 1.2E-24 2.7E-29 160.4 17.0 151 15-171 2-158 (159)
129 cd01878 HflX HflX subfamily. 99.9 8.7E-25 1.9E-29 168.8 15.6 157 9-172 38-203 (204)
130 cd01898 Obg Obg subfamily. Th 99.9 1.1E-24 2.4E-29 163.2 15.6 157 14-172 2-169 (170)
131 TIGR00231 small_GTP small GTP- 99.9 5.1E-24 1.1E-28 156.6 18.7 157 12-169 1-159 (161)
132 cd01890 LepA LepA subfamily. 99.9 2.2E-24 4.7E-29 163.0 17.1 154 14-173 2-176 (179)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 6.8E-24 1.5E-28 174.3 18.8 163 12-175 158-329 (335)
134 COG1100 GTPase SAR1 and relate 99.9 6.6E-23 1.4E-27 159.9 21.3 173 11-183 4-194 (219)
135 cd04155 Arl3 Arl3 subfamily. 99.9 2.5E-23 5.4E-28 156.4 18.3 153 9-171 11-172 (173)
136 cd04171 SelB SelB subfamily. 99.9 1.4E-23 3E-28 156.0 16.2 151 14-171 2-163 (164)
137 PRK04213 GTP-binding protein; 99.9 1.9E-24 4.1E-29 166.5 11.9 159 5-175 2-193 (201)
138 KOG0070 GTP-binding ADP-ribosy 99.9 5.8E-24 1.3E-28 155.7 12.7 159 10-175 15-179 (181)
139 TIGR02528 EutP ethanolamine ut 99.9 9.4E-24 2E-28 153.8 12.9 134 14-170 2-141 (142)
140 cd00882 Ras_like_GTPase Ras-li 99.9 9.7E-23 2.1E-27 148.4 18.0 153 17-170 1-156 (157)
141 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.1E-23 1.3E-27 153.3 15.9 157 14-174 2-166 (168)
142 PF02421 FeoB_N: Ferrous iron 99.9 1.2E-23 2.5E-28 153.9 11.0 148 13-169 1-156 (156)
143 cd01879 FeoB Ferrous iron tran 99.9 8.8E-23 1.9E-27 150.9 15.7 148 17-173 1-156 (158)
144 TIGR03156 GTP_HflX GTP-binding 99.9 1.3E-22 2.8E-27 167.9 17.9 155 10-172 187-350 (351)
145 TIGR02729 Obg_CgtA Obg family 99.9 3.3E-22 7.1E-27 164.2 18.0 160 12-173 157-328 (329)
146 cd01891 TypA_BipA TypA (tyrosi 99.9 1.4E-22 3.1E-27 155.3 13.9 149 13-165 3-173 (194)
147 cd01881 Obg_like The Obg-like 99.9 1.4E-22 2.9E-27 152.5 13.5 155 17-172 1-175 (176)
148 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1E-21 2.2E-26 144.7 16.5 146 13-173 2-156 (157)
149 TIGR00436 era GTP-binding prot 99.9 6.3E-22 1.4E-26 159.1 16.2 152 14-173 2-163 (270)
150 KOG3883 Ras family small GTPas 99.9 2.2E-21 4.9E-26 137.3 16.1 169 9-178 6-179 (198)
151 PRK03003 GTP-binding protein D 99.9 6.9E-22 1.5E-26 170.2 16.2 159 10-174 209-382 (472)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2E-21 4.3E-26 165.2 18.3 153 11-177 202-363 (442)
153 PF08477 Miro: Miro-like prote 99.9 1.2E-21 2.6E-26 138.4 13.9 114 14-128 1-119 (119)
154 PRK11058 GTPase HflX; Provisio 99.9 3.3E-21 7.1E-26 163.1 18.3 158 12-175 197-363 (426)
155 cd00881 GTP_translation_factor 99.9 2.4E-21 5.2E-26 147.2 15.6 154 14-173 1-186 (189)
156 PRK05291 trmE tRNA modificatio 99.9 2.4E-21 5.2E-26 165.5 16.3 148 12-175 215-371 (449)
157 PRK15494 era GTPase Era; Provi 99.9 7.5E-21 1.6E-25 157.1 18.4 155 10-174 50-216 (339)
158 PRK03003 GTP-binding protein D 99.9 4.3E-21 9.4E-26 165.3 17.7 156 10-175 36-200 (472)
159 cd01894 EngA1 EngA1 subfamily. 99.9 2.8E-21 6E-26 142.5 14.3 146 16-172 1-156 (157)
160 cd01889 SelB_euk SelB subfamil 99.9 3.2E-21 6.8E-26 147.6 14.4 158 13-174 1-186 (192)
161 PRK12297 obgE GTPase CgtA; Rev 99.9 1.7E-20 3.7E-25 158.0 19.9 159 13-176 159-329 (424)
162 PRK15467 ethanolamine utilizat 99.9 3.9E-21 8.5E-26 142.6 14.3 140 14-175 3-148 (158)
163 KOG0075 GTP-binding ADP-ribosy 99.9 3.9E-22 8.5E-27 140.2 7.4 157 12-174 20-182 (186)
164 TIGR01393 lepA GTP-binding pro 99.9 1.3E-20 2.7E-25 165.6 18.6 156 12-173 3-179 (595)
165 PRK00454 engB GTP-binding prot 99.9 1.5E-20 3.2E-25 144.1 16.6 163 5-174 17-194 (196)
166 PRK12296 obgE GTPase CgtA; Rev 99.9 1.2E-20 2.7E-25 160.7 17.6 163 12-177 159-343 (500)
167 TIGR00487 IF-2 translation ini 99.9 1.4E-20 3E-25 164.6 17.7 154 10-171 85-247 (587)
168 TIGR03594 GTPase_EngA ribosome 99.9 2.3E-20 5E-25 159.5 18.8 160 10-175 170-345 (429)
169 KOG1673 Ras GTPases [General f 99.9 7.6E-21 1.6E-25 134.9 12.1 165 11-176 19-188 (205)
170 KOG0071 GTP-binding ADP-ribosy 99.9 5.6E-21 1.2E-25 133.4 10.7 157 11-174 16-178 (180)
171 cd01895 EngA2 EngA2 subfamily. 99.9 5.9E-20 1.3E-24 137.4 17.2 155 12-172 2-173 (174)
172 PRK12298 obgE GTPase CgtA; Rev 99.9 4.8E-20 1E-24 154.4 18.2 161 13-175 160-334 (390)
173 cd04163 Era Era subfamily. Er 99.9 5E-20 1.1E-24 136.7 16.4 156 12-172 3-167 (168)
174 cd01888 eIF2_gamma eIF2-gamma 99.9 2.3E-20 4.9E-25 144.0 14.1 159 13-173 1-198 (203)
175 TIGR03598 GTPase_YsxC ribosome 99.8 3.6E-20 7.9E-25 140.2 14.4 149 8-163 14-179 (179)
176 TIGR00475 selB selenocysteine- 99.8 5.2E-20 1.1E-24 161.5 17.1 154 13-175 1-167 (581)
177 PRK00089 era GTPase Era; Revie 99.8 1.2E-19 2.5E-24 147.7 17.4 158 11-173 4-170 (292)
178 CHL00189 infB translation init 99.8 7.5E-20 1.6E-24 162.4 17.5 157 10-173 242-409 (742)
179 PRK05306 infB translation init 99.8 8.2E-20 1.8E-24 163.5 17.6 155 9-172 287-450 (787)
180 TIGR00437 feoB ferrous iron tr 99.8 6.8E-20 1.5E-24 161.0 15.8 146 19-173 1-154 (591)
181 PF00009 GTP_EFTU: Elongation 99.8 5.7E-20 1.2E-24 140.2 13.3 159 11-173 2-186 (188)
182 PRK00093 GTP-binding protein D 99.8 1.7E-19 3.7E-24 154.3 17.5 146 13-171 2-159 (435)
183 TIGR03594 GTPase_EngA ribosome 99.8 2.1E-19 4.5E-24 153.6 17.6 150 14-174 1-160 (429)
184 cd04105 SR_beta Signal recogni 99.8 3.9E-19 8.4E-24 137.1 16.8 117 14-131 2-123 (203)
185 cd00880 Era_like Era (E. coli 99.8 1.5E-19 3.2E-24 132.9 13.6 151 17-172 1-162 (163)
186 COG1159 Era GTPase [General fu 99.8 2.9E-19 6.2E-24 140.7 15.8 160 10-174 4-172 (298)
187 PRK00093 GTP-binding protein D 99.8 3.8E-19 8.2E-24 152.2 17.7 159 10-175 171-345 (435)
188 PRK09554 feoB ferrous iron tra 99.8 4.9E-19 1.1E-23 159.1 18.9 153 12-173 3-167 (772)
189 COG2229 Predicted GTPase [Gene 99.8 1.8E-18 3.9E-23 126.7 17.0 162 5-172 3-176 (187)
190 PRK09518 bifunctional cytidyla 99.8 5E-19 1.1E-23 159.2 17.0 158 10-175 448-622 (712)
191 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 8.3E-20 1.8E-24 133.8 9.8 164 10-176 8-171 (216)
192 PRK05433 GTP-binding protein L 99.8 7.3E-19 1.6E-23 154.6 17.3 159 10-174 5-184 (600)
193 KOG0076 GTP-binding ADP-ribosy 99.8 2E-19 4.4E-24 130.0 10.1 160 11-176 16-189 (197)
194 PRK09518 bifunctional cytidyla 99.8 2E-18 4.2E-23 155.4 18.5 155 11-175 274-437 (712)
195 TIGR00491 aIF-2 translation in 99.8 1.6E-18 3.4E-23 151.6 17.1 157 11-174 3-216 (590)
196 KOG4423 GTP-binding protein-li 99.8 1.1E-21 2.4E-26 143.1 -3.0 168 9-176 22-196 (229)
197 cd01896 DRG The developmentall 99.8 7.6E-18 1.6E-22 132.5 18.0 151 14-173 2-225 (233)
198 COG1160 Predicted GTPases [Gen 99.8 1.9E-18 4E-23 143.2 14.9 151 13-173 4-164 (444)
199 TIGR00483 EF-1_alpha translati 99.8 2.7E-18 5.8E-23 146.4 15.2 155 9-166 4-199 (426)
200 cd01876 YihA_EngB The YihA (En 99.8 5E-18 1.1E-22 126.2 14.3 150 14-172 1-169 (170)
201 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.6E-18 5.5E-23 133.1 12.8 146 14-164 1-184 (208)
202 COG0486 ThdF Predicted GTPase 99.8 6.7E-18 1.5E-22 140.3 15.9 153 12-176 217-378 (454)
203 COG1160 Predicted GTPases [Gen 99.8 3.8E-18 8.3E-23 141.4 13.9 171 11-188 177-364 (444)
204 KOG0072 GTP-binding ADP-ribosy 99.8 4.3E-19 9.4E-24 124.5 6.8 161 10-176 16-181 (182)
205 TIGR01394 TypA_BipA GTP-bindin 99.8 5.5E-18 1.2E-22 148.7 15.0 156 14-173 3-190 (594)
206 PRK12317 elongation factor 1-a 99.8 3.9E-18 8.4E-23 145.5 13.6 153 10-166 4-197 (425)
207 KOG0074 GTP-binding ADP-ribosy 99.8 3.3E-18 7.1E-23 119.8 10.5 159 8-172 13-177 (185)
208 PRK04004 translation initiatio 99.8 2.6E-17 5.7E-22 144.4 18.4 158 9-173 3-217 (586)
209 PRK10512 selenocysteinyl-tRNA- 99.8 1.9E-17 4E-22 146.0 17.1 157 13-174 1-166 (614)
210 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.5E-17 7.6E-22 125.2 16.5 148 12-163 2-172 (195)
211 PRK04000 translation initiatio 99.8 9.7E-18 2.1E-22 142.0 14.7 166 4-173 2-200 (411)
212 COG0218 Predicted GTPase [Gene 99.8 3.1E-17 6.8E-22 122.7 15.5 162 7-175 19-198 (200)
213 PRK10218 GTP-binding protein; 99.8 3E-17 6.5E-22 144.0 18.1 159 11-173 4-194 (607)
214 TIGR03680 eif2g_arch translati 99.8 9.2E-18 2E-22 142.1 14.3 162 10-173 2-195 (406)
215 cd04168 TetM_like Tet(M)-like 99.8 1.5E-17 3.3E-22 130.9 14.2 114 14-131 1-130 (237)
216 PF10662 PduV-EutP: Ethanolami 99.8 1.4E-17 3E-22 119.4 12.1 135 14-170 3-142 (143)
217 KOG1423 Ras-like GTPase ERA [C 99.8 3.7E-17 7.9E-22 128.7 15.3 164 6-173 66-270 (379)
218 COG0370 FeoB Fe2+ transport sy 99.7 2.8E-17 6E-22 142.0 14.2 156 11-175 2-165 (653)
219 cd04167 Snu114p Snu114p subfam 99.7 2.5E-17 5.4E-22 128.0 12.4 113 14-130 2-136 (213)
220 KOG1707 Predicted Ras related/ 99.7 1.8E-17 3.8E-22 140.1 10.7 168 5-174 2-175 (625)
221 cd01883 EF1_alpha Eukaryotic e 99.7 4.2E-17 9E-22 127.3 11.7 146 14-163 1-194 (219)
222 PRK12736 elongation factor Tu; 99.7 1.9E-16 4.1E-21 133.6 16.5 148 9-160 9-179 (394)
223 COG2262 HflX GTPases [General 99.7 2.3E-16 4.9E-21 129.2 16.2 162 10-177 190-359 (411)
224 TIGR00485 EF-Tu translation el 99.7 1.3E-16 2.7E-21 134.8 15.1 148 7-160 7-179 (394)
225 COG1084 Predicted GTPase [Gene 99.7 2.2E-16 4.7E-21 125.7 15.2 160 11-176 167-338 (346)
226 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.8E-16 3.9E-21 123.8 14.0 150 14-170 1-219 (224)
227 PRK12735 elongation factor Tu; 99.7 3.3E-16 7.3E-21 132.2 16.0 161 7-171 7-200 (396)
228 CHL00071 tufA elongation facto 99.7 5.8E-16 1.3E-20 131.3 16.5 158 1-162 1-181 (409)
229 COG0532 InfB Translation initi 99.7 9.2E-16 2E-20 129.3 17.0 160 10-176 3-172 (509)
230 KOG1489 Predicted GTP-binding 99.7 8.1E-16 1.8E-20 121.7 13.8 155 13-171 197-364 (366)
231 cd04169 RF3 RF3 subfamily. Pe 99.7 1.8E-15 3.8E-20 121.2 15.9 115 13-131 3-137 (267)
232 cd04104 p47_IIGP_like p47 (47- 99.7 1.3E-15 2.7E-20 117.1 14.4 158 12-177 1-187 (197)
233 PRK00049 elongation factor Tu; 99.7 2.7E-15 5.8E-20 126.7 16.9 150 7-160 7-179 (396)
234 cd01850 CDC_Septin CDC/Septin. 99.7 1.8E-15 3.9E-20 121.7 13.6 144 10-157 2-185 (276)
235 COG3596 Predicted GTPase [Gene 99.7 8.7E-16 1.9E-20 119.7 11.1 162 10-174 37-222 (296)
236 cd01885 EF2 EF2 (for archaea a 99.7 1.8E-15 3.9E-20 117.8 12.4 113 14-130 2-138 (222)
237 TIGR02034 CysN sulfate adenyly 99.7 2E-15 4.3E-20 127.9 13.2 147 13-164 1-187 (406)
238 cd04170 EF-G_bact Elongation f 99.7 7.5E-16 1.6E-20 123.8 10.1 148 14-169 1-168 (268)
239 KOG0077 Vesicle coat complex C 99.7 9.4E-16 2E-20 110.3 9.4 155 11-172 19-191 (193)
240 PLN00043 elongation factor 1-a 99.6 6.4E-15 1.4E-19 125.8 15.9 150 10-164 5-203 (447)
241 PRK00741 prfC peptide chain re 99.6 6.2E-15 1.4E-19 128.0 16.0 120 8-131 6-145 (526)
242 cd01886 EF-G Elongation factor 99.6 4.2E-15 9.1E-20 119.2 13.7 112 14-131 1-130 (270)
243 PF01926 MMR_HSR1: 50S ribosom 99.6 9.5E-15 2.1E-19 102.7 13.7 106 14-126 1-116 (116)
244 PLN03126 Elongation factor Tu; 99.6 1.1E-14 2.4E-19 125.0 16.8 147 9-161 78-249 (478)
245 PRK05124 cysN sulfate adenylyl 99.6 3.8E-15 8.3E-20 128.1 13.9 151 10-165 25-216 (474)
246 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.9E-14 4.2E-19 110.4 15.4 159 13-175 1-185 (196)
247 PRK13351 elongation factor G; 99.6 6.4E-15 1.4E-19 132.6 14.7 120 8-131 4-139 (687)
248 PLN03127 Elongation factor Tu; 99.6 1.5E-14 3.2E-19 123.5 16.2 156 10-171 59-249 (447)
249 COG1163 DRG Predicted GTPase [ 99.6 1.5E-14 3.2E-19 115.1 14.7 163 5-176 56-291 (365)
250 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 5.4E-15 1.2E-19 115.3 11.9 160 14-176 1-178 (232)
251 PTZ00141 elongation factor 1- 99.6 1.1E-14 2.4E-19 124.5 14.8 151 9-164 4-203 (446)
252 COG0536 Obg Predicted GTPase [ 99.6 1.3E-14 2.8E-19 116.2 13.7 164 14-178 161-337 (369)
253 cd01899 Ygr210 Ygr210 subfamil 99.6 1.7E-14 3.7E-19 117.8 14.7 81 15-95 1-110 (318)
254 PTZ00327 eukaryotic translatio 99.6 8.9E-15 1.9E-19 124.8 13.5 164 8-173 30-232 (460)
255 KOG1145 Mitochondrial translat 99.6 2.9E-14 6.3E-19 120.1 16.1 160 10-176 151-318 (683)
256 PRK05506 bifunctional sulfate 99.6 1.8E-14 3.9E-19 128.4 14.6 151 9-164 21-211 (632)
257 PRK12739 elongation factor G; 99.6 8.4E-14 1.8E-18 125.2 16.6 118 8-131 4-139 (691)
258 KOG1191 Mitochondrial GTPase [ 99.6 1.7E-14 3.6E-19 120.3 10.7 171 10-183 266-459 (531)
259 KOG0462 Elongation factor-type 99.6 4.3E-14 9.2E-19 119.1 12.7 159 10-174 58-235 (650)
260 PRK09866 hypothetical protein; 99.6 3.1E-13 6.8E-18 117.0 17.4 108 62-171 231-350 (741)
261 KOG1490 GTP-binding protein CR 99.6 4.8E-14 1E-18 117.7 11.8 171 11-184 167-351 (620)
262 TIGR00484 EF-G translation elo 99.5 2.4E-13 5.2E-18 122.3 16.4 118 8-131 6-141 (689)
263 PF09439 SRPRB: Signal recogni 99.5 1.3E-14 2.8E-19 108.6 6.7 116 12-131 3-126 (181)
264 TIGR00503 prfC peptide chain r 99.5 1.5E-13 3.3E-18 119.5 14.2 121 7-131 6-146 (527)
265 PRK09602 translation-associate 99.5 6E-13 1.3E-17 111.9 15.8 83 13-95 2-113 (396)
266 COG0481 LepA Membrane GTPase L 99.5 4.5E-13 9.8E-18 111.4 14.0 160 9-174 6-186 (603)
267 COG4917 EutP Ethanolamine util 99.5 1.5E-13 3.2E-18 94.6 8.3 136 14-171 3-143 (148)
268 COG5256 TEF1 Translation elong 99.5 3.4E-13 7.3E-18 110.7 11.7 154 10-164 5-201 (428)
269 KOG3905 Dynein light intermedi 99.5 2.8E-12 6E-17 102.2 15.9 162 12-176 52-292 (473)
270 PRK12740 elongation factor G; 99.5 1.6E-12 3.4E-17 116.9 16.1 108 18-131 1-126 (668)
271 PRK00007 elongation factor G; 99.5 1.1E-12 2.3E-17 118.1 14.5 144 8-159 6-171 (693)
272 PF04548 AIG1: AIG1 family; I 99.4 1.8E-12 3.8E-17 100.7 12.1 161 13-177 1-189 (212)
273 KOG1532 GTPase XAB1, interacts 99.4 8.7E-13 1.9E-17 102.8 10.0 168 8-178 15-268 (366)
274 cd01853 Toc34_like Toc34-like 99.4 3E-12 6.5E-17 101.4 13.1 121 8-131 27-163 (249)
275 cd00066 G-alpha G protein alph 99.4 7.5E-12 1.6E-16 102.8 15.5 118 60-177 160-314 (317)
276 TIGR00490 aEF-2 translation el 99.4 8E-13 1.7E-17 119.3 10.4 120 8-131 15-152 (720)
277 TIGR00991 3a0901s02IAP34 GTP-b 99.4 8.7E-12 1.9E-16 100.5 15.2 125 8-134 34-170 (313)
278 PRK14845 translation initiatio 99.4 5.6E-12 1.2E-16 116.0 15.8 143 23-172 472-671 (1049)
279 PF05783 DLIC: Dynein light in 99.4 8.4E-12 1.8E-16 106.5 15.1 165 10-177 23-267 (472)
280 COG2895 CysN GTPases - Sulfate 99.4 5E-12 1.1E-16 101.8 12.6 150 10-164 4-193 (431)
281 TIGR00157 ribosome small subun 99.4 1.4E-12 3.1E-17 103.2 8.9 96 72-171 24-120 (245)
282 PTZ00258 GTP-binding protein; 99.4 1.4E-11 3.1E-16 102.7 14.8 86 9-94 18-125 (390)
283 PRK13768 GTPase; Provisional 99.4 3.4E-12 7.4E-17 101.6 10.7 109 62-173 98-246 (253)
284 TIGR00101 ureG urease accessor 99.4 5.2E-12 1.1E-16 97.0 11.3 102 61-173 92-195 (199)
285 KOG0090 Signal recognition par 99.4 4.9E-12 1.1E-16 95.1 10.7 154 11-172 37-237 (238)
286 smart00275 G_alpha G protein a 99.4 5.3E-11 1.1E-15 98.6 16.5 118 61-178 184-338 (342)
287 smart00010 small_GTPase Small 99.4 1E-11 2.3E-16 87.7 10.8 114 13-163 1-115 (124)
288 PF03029 ATP_bind_1: Conserved 99.3 1.1E-12 2.3E-17 103.4 4.1 111 62-172 92-235 (238)
289 PLN00116 translation elongatio 99.3 9.6E-12 2.1E-16 114.0 10.7 119 8-130 15-163 (843)
290 KOG0461 Selenocysteine-specifi 99.3 5.6E-11 1.2E-15 95.6 13.5 164 8-175 3-194 (522)
291 PRK09601 GTP-binding protein Y 99.3 1.3E-10 2.9E-15 96.0 15.9 83 13-95 3-107 (364)
292 PTZ00416 elongation factor 2; 99.3 1.2E-11 2.6E-16 113.2 10.7 118 9-130 16-157 (836)
293 TIGR00073 hypB hydrogenase acc 99.3 3.3E-11 7.3E-16 93.2 11.7 152 10-172 20-205 (207)
294 PRK07560 elongation factor EF- 99.3 2.6E-11 5.7E-16 109.8 12.5 119 8-130 16-152 (731)
295 KOG1707 Predicted Ras related/ 99.3 6.5E-11 1.4E-15 100.8 13.8 161 11-177 424-586 (625)
296 PF00350 Dynamin_N: Dynamin fa 99.3 2.4E-11 5.3E-16 90.7 10.1 63 62-127 102-168 (168)
297 cd01882 BMS1 Bms1. Bms1 is an 99.3 6.7E-11 1.5E-15 92.6 12.8 140 10-161 37-183 (225)
298 COG5257 GCD11 Translation init 99.3 2.1E-11 4.6E-16 97.1 9.2 163 10-174 8-202 (415)
299 KOG1144 Translation initiation 99.3 5.3E-11 1.1E-15 103.7 11.6 166 11-180 474-693 (1064)
300 COG1217 TypA Predicted membran 99.3 6.3E-11 1.4E-15 98.6 11.5 159 11-173 4-194 (603)
301 COG0378 HypB Ni2+-binding GTPa 99.3 4.9E-11 1.1E-15 89.0 9.5 151 12-173 13-200 (202)
302 PRK09435 membrane ATPase/prote 99.2 1.1E-10 2.3E-15 95.9 12.1 103 61-174 149-260 (332)
303 cd01900 YchF YchF subfamily. 99.2 1.8E-10 4E-15 92.2 12.3 80 15-94 1-102 (274)
304 TIGR02836 spore_IV_A stage IV 99.2 5.7E-10 1.2E-14 92.6 14.7 154 9-167 14-230 (492)
305 PF05049 IIGP: Interferon-indu 99.2 1.7E-10 3.8E-15 95.4 11.3 159 11-177 34-221 (376)
306 KOG0458 Elongation factor 1 al 99.2 2.3E-10 5.1E-15 97.5 12.1 153 11-165 176-373 (603)
307 COG3276 SelB Selenocysteine-sp 99.2 3.1E-10 6.7E-15 94.1 11.8 155 14-174 2-162 (447)
308 PF00735 Septin: Septin; Inte 99.2 1.2E-09 2.6E-14 88.0 14.4 116 11-131 3-156 (281)
309 KOG0082 G-protein alpha subuni 99.2 2.5E-09 5.3E-14 87.6 16.1 130 48-179 184-349 (354)
310 TIGR00750 lao LAO/AO transport 99.2 4.3E-10 9.4E-15 91.8 11.3 103 61-174 127-238 (300)
311 COG0480 FusA Translation elong 99.2 3.3E-10 7.1E-15 100.9 11.4 119 9-131 7-142 (697)
312 TIGR00993 3a0901s04IAP86 chlor 99.1 2.1E-09 4.5E-14 94.0 15.5 122 8-131 114-250 (763)
313 KOG0410 Predicted GTP binding 99.1 8.7E-11 1.9E-15 93.7 6.5 157 11-178 177-345 (410)
314 smart00053 DYNc Dynamin, GTPas 99.1 7.7E-10 1.7E-14 86.9 11.7 119 10-131 24-206 (240)
315 COG4108 PrfC Peptide chain rel 99.1 7E-10 1.5E-14 91.8 10.3 138 7-150 7-164 (528)
316 KOG0468 U5 snRNP-specific prot 99.1 1E-09 2.3E-14 94.8 10.9 121 6-130 122-262 (971)
317 PRK10463 hydrogenase nickel in 99.1 5E-10 1.1E-14 89.8 8.4 55 118-172 231-287 (290)
318 KOG3886 GTP-binding protein [S 99.0 7.3E-10 1.6E-14 84.6 6.9 147 12-160 4-165 (295)
319 KOG1954 Endocytosis/signaling 99.0 5.6E-09 1.2E-13 85.0 10.5 127 3-132 49-226 (532)
320 cd01859 MJ1464 MJ1464. This f 99.0 2.6E-09 5.7E-14 78.8 7.5 95 74-174 2-96 (156)
321 COG5019 CDC3 Septin family pro 99.0 1.8E-08 3.8E-13 82.2 12.7 117 10-131 21-176 (373)
322 COG0012 Predicted GTPase, prob 99.0 2.7E-08 5.9E-13 81.5 13.9 84 12-95 2-108 (372)
323 cd01855 YqeH YqeH. YqeH is an 98.9 7.8E-09 1.7E-13 78.9 10.0 95 72-173 22-124 (190)
324 KOG2655 Septin family protein 98.9 3E-08 6.4E-13 81.4 13.2 145 10-159 19-202 (366)
325 KOG1547 Septin CDC10 and relat 98.9 3.1E-08 6.7E-13 76.3 12.1 154 10-168 44-237 (336)
326 PRK12289 GTPase RsgA; Reviewed 98.9 1.1E-08 2.3E-13 84.9 10.2 93 76-173 81-174 (352)
327 KOG1486 GTP-binding protein DR 98.9 9.6E-08 2.1E-12 74.1 14.1 93 5-99 55-154 (364)
328 COG1703 ArgK Putative periplas 98.9 3.6E-08 7.8E-13 78.4 11.4 154 12-176 51-256 (323)
329 KOG0705 GTPase-activating prot 98.9 1.5E-08 3.2E-13 86.1 9.7 165 11-182 29-197 (749)
330 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.1E-08 2.3E-13 83.1 8.7 88 79-171 73-161 (287)
331 PF03308 ArgK: ArgK protein; 98.9 3.9E-09 8.5E-14 82.6 5.8 154 11-176 28-232 (266)
332 KOG2486 Predicted GTPase [Gene 98.8 1.1E-08 2.3E-13 80.4 7.2 158 6-170 130-312 (320)
333 PF00503 G-alpha: G-protein al 98.8 1.8E-07 4E-12 79.2 14.9 113 61-173 236-389 (389)
334 COG0050 TufB GTPases - transla 98.8 6.6E-08 1.4E-12 76.6 10.8 145 10-158 10-177 (394)
335 COG5258 GTPBP1 GTPase [General 98.8 1.3E-07 2.8E-12 77.5 12.6 157 7-167 112-332 (527)
336 PRK12288 GTPase RsgA; Reviewed 98.8 4.4E-08 9.5E-13 81.3 9.9 88 82-172 118-206 (347)
337 PRK00098 GTPase RsgA; Reviewed 98.8 2.4E-08 5.1E-13 81.5 8.1 87 81-171 77-164 (298)
338 KOG3887 Predicted small GTPase 98.7 8E-08 1.7E-12 74.1 8.7 162 12-178 27-206 (347)
339 cd01858 NGP_1 NGP-1. Autoanti 98.7 4.1E-08 9E-13 72.5 6.9 56 11-70 101-156 (157)
340 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3.6E-08 7.7E-13 71.6 6.4 54 14-71 85-138 (141)
341 TIGR03597 GTPase_YqeH ribosome 98.7 9.9E-08 2.1E-12 79.9 9.6 95 71-172 50-151 (360)
342 cd04178 Nucleostemin_like Nucl 98.7 4.3E-08 9.3E-13 73.5 6.6 57 10-70 115-171 (172)
343 KOG1143 Predicted translation 98.6 3.7E-07 8E-12 74.7 10.7 152 10-165 165-379 (591)
344 COG1618 Predicted nucleotide k 98.6 4.1E-06 9E-11 61.0 14.9 147 11-174 4-176 (179)
345 cd01858 NGP_1 NGP-1. Autoanti 98.6 2.6E-07 5.6E-12 68.3 7.9 91 80-173 4-94 (157)
346 cd01856 YlqF YlqF. Proteins o 98.6 2.2E-07 4.7E-12 69.7 6.9 59 9-71 112-170 (171)
347 KOG0467 Translation elongation 98.6 2.4E-07 5.2E-12 81.6 7.9 119 7-129 4-136 (887)
348 COG5192 BMS1 GTP-binding prote 98.5 1.1E-06 2.5E-11 75.4 11.3 145 2-158 59-210 (1077)
349 TIGR03596 GTPase_YlqF ribosome 98.5 2.8E-07 6E-12 74.5 7.3 58 10-71 116-173 (276)
350 cd01849 YlqF_related_GTPase Yl 98.5 6.1E-07 1.3E-11 66.1 8.5 85 86-174 1-85 (155)
351 PRK09563 rbgA GTPase YlqF; Rev 98.5 3.8E-07 8.2E-12 74.1 7.9 59 10-72 119-177 (287)
352 KOG0447 Dynamin-like GTP bindi 98.5 1E-05 2.3E-10 69.4 16.5 137 6-145 302-507 (980)
353 KOG0464 Elongation factor G [T 98.5 1.1E-07 2.4E-12 78.6 4.2 118 10-131 35-168 (753)
354 cd01855 YqeH YqeH. YqeH is an 98.5 2.8E-07 6E-12 70.3 6.0 56 12-70 127-189 (190)
355 TIGR00092 GTP-binding protein 98.5 6.5E-07 1.4E-11 74.3 8.5 83 13-95 3-108 (368)
356 cd01859 MJ1464 MJ1464. This f 98.5 4.6E-07 1E-11 66.8 6.9 56 11-70 100-155 (156)
357 PF03193 DUF258: Protein of un 98.5 2.2E-07 4.7E-12 68.4 4.5 59 13-74 36-100 (161)
358 TIGR03348 VI_IcmF type VI secr 98.5 1.5E-06 3.2E-11 83.0 11.0 113 15-131 114-257 (1169)
359 cd01851 GBP Guanylate-binding 98.5 2.9E-06 6.4E-11 66.4 11.0 87 10-97 5-104 (224)
360 KOG1491 Predicted GTP-binding 98.4 4.8E-07 1E-11 73.1 6.1 85 11-95 19-125 (391)
361 COG1161 Predicted GTPases [Gen 98.4 5.8E-07 1.2E-11 74.1 6.2 58 11-72 131-188 (322)
362 KOG0448 Mitofusin 1 GTPase, in 98.4 8E-06 1.7E-10 71.6 12.8 118 11-132 108-276 (749)
363 cd01849 YlqF_related_GTPase Yl 98.4 1.2E-06 2.7E-11 64.5 6.8 56 10-70 98-154 (155)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.4E-06 3.1E-11 63.1 7.0 77 79-161 6-84 (141)
365 cd01856 YlqF YlqF. Proteins o 98.3 2.1E-06 4.5E-11 64.3 7.5 91 75-173 10-100 (171)
366 TIGR03596 GTPase_YlqF ribosome 98.3 5.5E-06 1.2E-10 66.9 10.1 100 69-176 5-105 (276)
367 KOG0460 Mitochondrial translat 98.3 3.3E-06 7.2E-11 68.4 8.2 144 11-157 53-218 (449)
368 KOG1487 GTP-binding protein DR 98.3 5E-06 1.1E-10 65.0 8.9 90 10-101 57-153 (358)
369 KOG0466 Translation initiation 98.3 6.5E-07 1.4E-11 71.5 3.6 159 10-174 36-241 (466)
370 PRK01889 GTPase RsgA; Reviewed 98.3 3.6E-06 7.8E-11 70.4 8.2 83 82-170 110-193 (356)
371 KOG0099 G protein subunit Galp 98.3 6.2E-06 1.3E-10 64.6 8.8 120 60-179 201-374 (379)
372 PRK10416 signal recognition pa 98.3 8.3E-06 1.8E-10 67.1 9.9 94 61-166 197-302 (318)
373 PRK13796 GTPase YqeH; Provisio 98.3 8.8E-06 1.9E-10 68.3 10.2 92 73-172 58-157 (365)
374 PRK12288 GTPase RsgA; Reviewed 98.3 2.4E-06 5.2E-11 71.0 6.5 58 15-75 208-271 (347)
375 KOG4273 Uncharacterized conser 98.3 8.7E-06 1.9E-10 63.4 9.1 164 12-178 4-226 (418)
376 cd03112 CobW_like The function 98.3 7.3E-06 1.6E-10 60.6 8.5 22 14-35 2-23 (158)
377 TIGR01425 SRP54_euk signal rec 98.2 2E-05 4.3E-10 67.0 12.0 65 60-130 182-252 (429)
378 KOG0463 GTP-binding protein GP 98.2 7.1E-06 1.5E-10 67.4 8.8 157 11-173 132-356 (641)
379 PRK09563 rbgA GTPase YlqF; Rev 98.2 1E-05 2.3E-10 65.7 9.6 101 68-176 7-108 (287)
380 KOG0085 G protein subunit Galp 98.2 3.5E-06 7.7E-11 64.8 6.2 119 60-178 198-353 (359)
381 PRK14974 cell division protein 98.2 2.6E-06 5.6E-11 70.4 5.8 96 61-168 223-324 (336)
382 TIGR00064 ftsY signal recognit 98.2 8.7E-06 1.9E-10 65.5 8.7 94 61-166 155-260 (272)
383 PF09547 Spore_IV_A: Stage IV 98.2 5.4E-05 1.2E-09 63.5 13.3 146 9-158 14-219 (492)
384 COG1162 Predicted GTPases [Gen 98.2 3E-06 6.5E-11 68.1 5.5 59 14-75 166-230 (301)
385 TIGR00157 ribosome small subun 98.2 4.5E-06 9.8E-11 66.2 6.2 56 14-73 122-183 (245)
386 PRK12289 GTPase RsgA; Reviewed 98.2 3.9E-06 8.3E-11 69.9 5.7 56 15-73 175-236 (352)
387 KOG3859 Septins (P-loop GTPase 98.2 1.3E-05 2.8E-10 63.4 8.2 61 10-70 40-104 (406)
388 TIGR03597 GTPase_YqeH ribosome 98.1 5.3E-06 1.1E-10 69.5 6.4 56 13-73 155-216 (360)
389 PRK13796 GTPase YqeH; Provisio 98.1 5.1E-06 1.1E-10 69.7 5.6 57 13-72 161-221 (365)
390 COG1162 Predicted GTPases [Gen 98.0 4E-05 8.7E-10 61.7 9.3 94 76-172 71-165 (301)
391 PRK13695 putative NTPase; Prov 98.0 0.00017 3.7E-09 54.1 12.0 82 79-173 91-172 (174)
392 COG3523 IcmF Type VI protein s 98.0 3.2E-05 6.9E-10 72.7 9.5 111 15-131 128-270 (1188)
393 KOG0465 Mitochondrial elongati 98.0 1.8E-05 3.8E-10 68.7 6.8 119 10-132 37-171 (721)
394 KOG1424 Predicted GTP-binding 98.0 9.8E-06 2.1E-10 68.9 4.9 57 12-72 314-370 (562)
395 PRK14722 flhF flagellar biosyn 98.0 8.9E-05 1.9E-09 62.1 10.4 137 12-155 137-315 (374)
396 PF03266 NTPase_1: NTPase; In 98.0 1.9E-05 4.1E-10 59.0 5.8 136 14-162 1-163 (168)
397 PRK12727 flagellar biosynthesi 97.9 0.0003 6.5E-09 61.2 13.0 90 61-162 429-523 (559)
398 cd01854 YjeQ_engC YjeQ/EngC. 97.9 2.5E-05 5.4E-10 63.5 5.8 59 13-74 162-226 (287)
399 cd03115 SRP The signal recogni 97.9 0.00021 4.5E-09 53.5 10.3 83 61-153 83-171 (173)
400 PRK00098 GTPase RsgA; Reviewed 97.9 2.6E-05 5.6E-10 63.7 5.7 57 14-73 166-228 (298)
401 PRK11889 flhF flagellar biosyn 97.8 5.1E-05 1.1E-09 63.6 6.5 92 61-164 321-418 (436)
402 cd03114 ArgK-like The function 97.8 9.7E-05 2.1E-09 54.0 7.3 58 60-128 91-148 (148)
403 PF00448 SRP54: SRP54-type pro 97.8 0.00029 6.4E-09 53.9 10.1 90 61-162 84-179 (196)
404 PRK14721 flhF flagellar biosyn 97.8 0.00018 3.9E-09 61.2 9.7 139 12-162 191-365 (420)
405 COG0523 Putative GTPases (G3E 97.8 0.00069 1.5E-08 55.8 12.8 143 15-166 4-193 (323)
406 PRK00771 signal recognition pa 97.8 5.8E-05 1.3E-09 64.6 6.7 84 62-155 177-266 (437)
407 COG1419 FlhF Flagellar GTP-bin 97.8 0.00043 9.4E-09 58.0 11.5 133 12-154 203-371 (407)
408 KOG0459 Polypeptide release fa 97.7 0.00011 2.4E-09 61.0 7.3 158 6-167 73-279 (501)
409 TIGR00959 ffh signal recogniti 97.7 0.00024 5.3E-09 60.7 9.0 85 61-155 183-273 (428)
410 PRK10867 signal recognition pa 97.7 0.0003 6.6E-09 60.1 9.2 85 61-155 184-274 (433)
411 PRK05703 flhF flagellar biosyn 97.7 0.00052 1.1E-08 58.8 10.5 90 61-162 300-396 (424)
412 COG3640 CooC CO dehydrogenase 97.6 0.00073 1.6E-08 52.5 9.9 48 79-129 150-197 (255)
413 cd02042 ParA ParA and ParB of 97.6 0.00044 9.4E-09 47.1 7.9 82 15-108 2-84 (104)
414 PRK14723 flhF flagellar biosyn 97.6 0.0005 1.1E-08 62.4 10.0 93 61-162 264-362 (767)
415 cd03111 CpaE_like This protein 97.6 0.00045 9.8E-09 47.4 7.8 103 15-126 2-106 (106)
416 KOG0469 Elongation factor 2 [T 97.6 0.00019 4.1E-09 61.3 6.8 114 13-130 20-163 (842)
417 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00063 1.4E-08 45.1 8.2 69 15-97 2-71 (99)
418 PRK12726 flagellar biosynthesi 97.6 0.00031 6.7E-09 58.8 7.7 91 61-163 286-382 (407)
419 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00054 1.2E-08 41.1 6.6 47 81-128 10-58 (58)
420 KOG2485 Conserved ATP/GTP bind 97.6 0.00011 2.4E-09 59.1 4.8 61 10-71 141-206 (335)
421 KOG2484 GTPase [General functi 97.6 6.7E-05 1.5E-09 62.1 3.6 60 9-72 249-308 (435)
422 PRK06995 flhF flagellar biosyn 97.5 0.0023 4.9E-08 55.5 12.6 89 62-162 336-430 (484)
423 PRK12724 flagellar biosynthesi 97.5 0.0007 1.5E-08 57.4 9.0 134 12-155 223-393 (432)
424 cd02038 FleN-like FleN is a me 97.5 0.00046 1E-08 49.8 7.0 106 16-129 4-109 (139)
425 cd00009 AAA The AAA+ (ATPases 97.5 0.00095 2.1E-08 47.6 8.7 24 13-36 20-43 (151)
426 PF02492 cobW: CobW/HypB/UreG, 97.5 0.00026 5.5E-09 53.4 5.7 21 14-34 2-22 (178)
427 KOG1534 Putative transcription 97.5 0.00046 1E-08 52.7 6.8 23 12-34 3-25 (273)
428 PRK11537 putative GTP-binding 97.5 0.0033 7.2E-08 51.8 12.3 24 12-35 4-27 (318)
429 PRK12723 flagellar biosynthesi 97.4 0.0024 5.1E-08 54.0 11.4 90 61-162 255-351 (388)
430 PRK06731 flhF flagellar biosyn 97.4 0.00084 1.8E-08 53.9 8.3 138 13-163 76-251 (270)
431 TIGR02475 CobW cobalamin biosy 97.3 0.0046 1E-07 51.5 11.7 22 14-35 6-27 (341)
432 PF13207 AAA_17: AAA domain; P 97.3 0.00021 4.5E-09 50.0 3.0 22 14-35 1-22 (121)
433 COG0563 Adk Adenylate kinase a 97.3 0.00023 5E-09 53.6 3.0 23 13-35 1-23 (178)
434 PRK08118 topology modulation p 97.3 0.00026 5.7E-09 52.8 3.2 23 13-35 2-24 (167)
435 PRK07261 topology modulation p 97.2 0.00029 6.2E-09 52.8 3.0 22 14-35 2-23 (171)
436 cd03110 Fer4_NifH_child This p 97.2 0.0048 1E-07 46.3 9.4 84 60-152 92-175 (179)
437 PF13671 AAA_33: AAA domain; P 97.2 0.00032 7E-09 50.5 2.8 20 15-34 2-21 (143)
438 cd02036 MinD Bacterial cell di 97.2 0.015 3.3E-07 43.3 12.1 84 62-152 64-147 (179)
439 PF13555 AAA_29: P-loop contai 97.2 0.00067 1.4E-08 41.6 3.7 22 14-35 25-46 (62)
440 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.013 2.9E-07 42.5 11.2 23 14-36 28-50 (144)
441 COG1126 GlnQ ABC-type polar am 97.1 0.00066 1.4E-08 52.1 3.8 24 14-37 30-53 (240)
442 KOG0780 Signal recognition par 97.1 0.0014 3E-08 54.5 5.7 46 59-104 182-233 (483)
443 cd02019 NK Nucleoside/nucleoti 97.0 0.00066 1.4E-08 42.7 3.0 21 15-35 2-22 (69)
444 cd03222 ABC_RNaseL_inhibitor T 97.0 0.015 3.2E-07 43.8 10.8 23 14-36 27-49 (177)
445 KOG0446 Vacuolar sorting prote 97.0 0.00041 8.8E-09 62.3 2.5 123 7-131 24-213 (657)
446 PF13521 AAA_28: AAA domain; P 97.0 0.00045 9.6E-09 51.2 2.1 22 14-35 1-22 (163)
447 COG1136 SalX ABC-type antimicr 97.0 0.00064 1.4E-08 52.9 2.9 22 15-36 34-55 (226)
448 PF11111 CENP-M: Centromere pr 97.0 0.042 9.1E-07 40.8 12.2 138 12-173 15-152 (176)
449 COG1116 TauB ABC-type nitrate/ 96.9 0.0007 1.5E-08 53.1 2.9 22 15-36 32-53 (248)
450 cd04178 Nucleostemin_like Nucl 96.9 0.0025 5.4E-08 47.8 5.8 44 86-131 1-44 (172)
451 PF00005 ABC_tran: ABC transpo 96.9 0.00083 1.8E-08 48.0 3.0 23 14-36 13-35 (137)
452 cd01128 rho_factor Transcripti 96.9 0.019 4.1E-07 45.7 10.9 23 14-36 18-40 (249)
453 KOG1533 Predicted GTPase [Gene 96.9 0.00081 1.7E-08 52.2 2.8 68 62-131 98-177 (290)
454 PF07015 VirC1: VirC1 protein; 96.9 0.011 2.4E-07 46.1 9.1 102 61-167 84-187 (231)
455 PRK01889 GTPase RsgA; Reviewed 96.9 0.0015 3.3E-08 54.7 4.6 23 14-36 197-219 (356)
456 PRK06217 hypothetical protein; 96.9 0.00094 2E-08 50.5 3.1 23 13-35 2-24 (183)
457 PRK04195 replication factor C 96.8 0.024 5.2E-07 49.6 12.0 24 12-35 39-62 (482)
458 PF13238 AAA_18: AAA domain; P 96.8 0.00092 2E-08 47.0 2.7 21 15-35 1-21 (129)
459 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0061 1.3E-07 43.6 6.8 23 14-36 24-46 (133)
460 smart00382 AAA ATPases associa 96.8 0.0012 2.7E-08 46.5 3.3 26 13-38 3-28 (148)
461 KOG3929 Uncharacterized conser 96.8 0.0017 3.7E-08 51.1 4.1 89 7-98 40-133 (363)
462 PF00004 AAA: ATPase family as 96.8 0.0012 2.6E-08 46.6 3.1 22 15-36 1-22 (132)
463 PRK03839 putative kinase; Prov 96.8 0.0011 2.4E-08 49.9 2.9 22 14-35 2-23 (180)
464 TIGR00235 udk uridine kinase. 96.8 0.0016 3.4E-08 50.3 3.9 27 9-35 3-29 (207)
465 cd00071 GMPK Guanosine monopho 96.8 0.0012 2.6E-08 47.5 3.0 21 15-35 2-22 (137)
466 PF05621 TniB: Bacterial TniB 96.8 0.0097 2.1E-07 48.3 8.3 104 9-126 58-189 (302)
467 cd01131 PilT Pilus retraction 96.8 0.0069 1.5E-07 46.4 7.2 22 15-36 4-25 (198)
468 COG4598 HisP ABC-type histidin 96.8 0.0053 1.1E-07 46.1 6.2 39 138-176 162-202 (256)
469 PRK05416 glmZ(sRNA)-inactivati 96.7 0.021 4.5E-07 46.5 10.1 74 14-113 8-83 (288)
470 PRK14530 adenylate kinase; Pro 96.7 0.0013 2.9E-08 51.1 3.1 22 13-34 4-25 (215)
471 KOG0066 eIF2-interacting prote 96.7 0.016 3.5E-07 49.3 9.5 27 10-36 611-637 (807)
472 PF04665 Pox_A32: Poxvirus A32 96.7 0.0014 3E-08 51.6 3.1 27 9-35 10-36 (241)
473 TIGR02322 phosphon_PhnN phosph 96.7 0.0014 3.1E-08 49.2 3.0 22 14-35 3-24 (179)
474 PRK10078 ribose 1,5-bisphospho 96.7 0.0015 3.3E-08 49.5 3.2 23 14-36 4-26 (186)
475 PF03205 MobB: Molybdopterin g 96.7 0.0016 3.5E-08 47.1 3.1 23 14-36 2-24 (140)
476 PF03215 Rad17: Rad17 cell cyc 96.7 0.017 3.7E-07 50.8 9.8 22 14-35 47-68 (519)
477 COG1161 Predicted GTPases [Gen 96.7 0.0077 1.7E-07 49.8 7.4 96 65-167 14-110 (322)
478 KOG2423 Nucleolar GTPase [Gene 96.7 0.00064 1.4E-08 56.6 1.0 56 11-70 306-361 (572)
479 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0016 3.5E-08 44.7 2.8 20 14-33 17-36 (107)
480 TIGR03263 guanyl_kin guanylate 96.7 0.0016 3.5E-08 48.9 3.0 22 14-35 3-24 (180)
481 PRK14738 gmk guanylate kinase; 96.6 0.0035 7.6E-08 48.4 4.9 25 11-35 12-36 (206)
482 PRK08233 hypothetical protein; 96.6 0.002 4.4E-08 48.3 3.4 24 12-35 3-26 (182)
483 COG3840 ThiQ ABC-type thiamine 96.6 0.0024 5.2E-08 47.9 3.6 25 13-37 26-50 (231)
484 cd02023 UMPK Uridine monophosp 96.6 0.0017 3.8E-08 49.6 3.0 21 15-35 2-22 (198)
485 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0017 3.7E-08 49.0 2.9 22 13-34 4-25 (188)
486 PRK13900 type IV secretion sys 96.6 0.009 1.9E-07 49.6 7.3 25 12-36 160-184 (332)
487 PRK13949 shikimate kinase; Pro 96.6 0.002 4.3E-08 48.2 3.2 22 14-35 3-24 (169)
488 PRK05480 uridine/cytidine kina 96.6 0.0021 4.6E-08 49.6 3.4 25 11-35 5-29 (209)
489 cd03216 ABC_Carb_Monos_I This 96.6 0.043 9.3E-07 40.6 10.3 23 14-36 28-50 (163)
490 PRK14532 adenylate kinase; Pro 96.6 0.0018 3.9E-08 49.1 2.9 21 14-34 2-22 (188)
491 cd01130 VirB11-like_ATPase Typ 96.6 0.0021 4.6E-08 48.7 3.2 24 13-36 26-49 (186)
492 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0063 1.4E-07 47.4 5.9 24 12-35 38-61 (226)
493 PRK14531 adenylate kinase; Pro 96.5 0.0021 4.5E-08 48.6 3.0 22 13-34 3-24 (183)
494 COG3845 ABC-type uncharacteriz 96.5 0.03 6.5E-07 48.1 10.0 51 76-128 150-201 (501)
495 PRK14737 gmk guanylate kinase; 96.5 0.0023 5.1E-08 48.6 3.1 25 12-36 4-28 (186)
496 PRK13851 type IV secretion sys 96.5 0.016 3.5E-07 48.3 8.3 25 12-36 162-186 (344)
497 PRK10751 molybdopterin-guanine 96.5 0.0028 6E-08 47.5 3.4 26 11-36 5-30 (173)
498 COG3638 ABC-type phosphate/pho 96.5 0.0021 4.6E-08 50.0 2.9 21 14-34 32-52 (258)
499 cd03238 ABC_UvrA The excision 96.5 0.0025 5.4E-08 48.0 3.2 22 13-34 22-43 (176)
500 PF07728 AAA_5: AAA domain (dy 96.5 0.0024 5.3E-08 45.8 3.0 22 14-35 1-22 (139)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-42 Score=253.06 Aligned_cols=175 Identities=50% Similarity=0.822 Sum_probs=167.8
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
+..++|.|||+|+|+.|||||.|+.+|.+..|.+.+..|+|+++..+.+.++++.+++++|||+|+++|+++..+|++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccccCCCHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVED 164 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 164 (222)
|++|+|||+++.+||..+..|+.++.++....+|.++||||+|+.+.+.++.++++.|+..++++ |+++||+++.++.+
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q 027503 165 AFLQMINQIHQTTIQK 180 (222)
Q Consensus 165 ~~~~l~~~i~~~~~~~ 180 (222)
.|..|...+..+....
T Consensus 163 ~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999988887655443
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-40 Score=240.06 Aligned_cols=173 Identities=45% Similarity=0.745 Sum_probs=163.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
....+||++||+.+||||||+.++..+.|.+...+|++-.+..+.+.+++..++|.||||+|+++|..+.++|+++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 45789999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
|+|||+++.+||..+..|+..+.+....++-+.|||||+||.+.+.+..+++..++...++.|+++||++|.|+.++|..
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 99999999999999999999999988777778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhh
Q 027503 169 MINQIHQTTIQKS 181 (222)
Q Consensus 169 l~~~i~~~~~~~~ 181 (222)
|.+.+........
T Consensus 162 Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 162 IAEKLPCSDPQER 174 (200)
T ss_pred HHHhccCcccccc
Confidence 9998876654443
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-39 Score=240.82 Aligned_cols=181 Identities=49% Similarity=0.811 Sum_probs=172.3
Q ss_pred CCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhh
Q 027503 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSY 81 (222)
Q Consensus 2 ~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 81 (222)
+.+..+++++.+||+++|+++||||+|+.+|..+.|...+..|.++++..+.+.+++..+.+++|||+|+++++.+...|
T Consensus 2 ~~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sY 81 (207)
T KOG0078|consen 2 SAMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAY 81 (207)
T ss_pred CccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHH
Confidence 45666699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503 82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN 161 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (222)
+++|+++++|||+++..||+++..|+..+..+...++|.++||||+|+.+.+.++.+.++.+|.++|+.|+|+||++|.|
T Consensus 82 yrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 82 YRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFN 161 (207)
T ss_pred HhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 027503 162 VEDAFLQMINQIHQTTIQKSL 182 (222)
Q Consensus 162 i~~~~~~l~~~i~~~~~~~~~ 182 (222)
|.+.|-.|++.+.......+.
T Consensus 162 I~eaF~~La~~i~~k~~~~~~ 182 (207)
T KOG0078|consen 162 IEEAFLSLARDILQKLEDAEL 182 (207)
T ss_pred HHHHHHHHHHHHHhhcchhhh
Confidence 999999999999975555433
No 4
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-39 Score=239.84 Aligned_cols=180 Identities=64% Similarity=0.993 Sum_probs=173.8
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (222)
.++++++|.+||+++|++++|||-|+.+|..++|...+.+|+++++....+.++++.++.+||||+|+++|+++..+|++
T Consensus 6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
++.++++|||++...+|+.+..|+.+++.+.+..+++++||||+||.+.+.++.++++.++...++.|+++||.++.++.
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHH
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 027503 164 DAFLQMINQIHQTTIQKSLC 183 (222)
Q Consensus 164 ~~~~~l~~~i~~~~~~~~~~ 183 (222)
++|+.++..++....++...
T Consensus 166 ~aF~~~l~~I~~~vs~k~~~ 185 (222)
T KOG0087|consen 166 KAFERVLTEIYKIVSKKQLD 185 (222)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999888877665
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-38 Score=233.78 Aligned_cols=169 Identities=40% Similarity=0.664 Sum_probs=159.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
-+.+||++||+.+|||||||+++....|...+.+|+|+++...++.+.+..+.+++|||+|+++|+.+.++|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCC-CCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSS-CMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
+|||+++..||++..+|+..+....+. ++-+++||||.||.+.+++..++....+.++++.|+++||+.|.||.++|..
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 999999999999999999999888765 4777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 027503 169 MINQIHQTTI 178 (222)
Q Consensus 169 l~~~i~~~~~ 178 (222)
|...+.+...
T Consensus 180 Iaa~l~~~~~ 189 (221)
T KOG0094|consen 180 IAAALPGMEV 189 (221)
T ss_pred HHHhccCccc
Confidence 8777766554
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.5e-38 Score=224.66 Aligned_cols=176 Identities=45% Similarity=0.699 Sum_probs=163.8
Q ss_pred CCCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh
Q 027503 1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSS 80 (222)
Q Consensus 1 ~~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 80 (222)
|++.+ ..++..+||+++|.+|+|||||+.+|..+.|.+....++++++..+.+.+++..+++.||||+|+++|+.+++.
T Consensus 1 M~~~s-s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpS 79 (209)
T KOG0080|consen 1 MGDSS-SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPS 79 (209)
T ss_pred CCCCc-cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHh
Confidence 55544 56778899999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503 81 YYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN 159 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (222)
|++++.++|+|||++.+++|..+..|++++..+.. .++-.++|+||+|...++.++.++...|++.+++-|+++||++.
T Consensus 80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~ 159 (209)
T KOG0080|consen 80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTR 159 (209)
T ss_pred HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhh
Confidence 99999999999999999999999999999988874 55667899999999888999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 027503 160 LNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 160 ~gi~~~~~~l~~~i~~~~ 177 (222)
+|+...|+.++.++.+.-
T Consensus 160 ~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 160 ENVQCCFEELVEKIIETP 177 (209)
T ss_pred ccHHHHHHHHHHHHhcCc
Confidence 999999999999998643
No 7
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=4e-37 Score=239.66 Aligned_cols=181 Identities=61% Similarity=0.972 Sum_probs=165.0
Q ss_pred CCCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh
Q 027503 1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSS 80 (222)
Q Consensus 1 ~~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 80 (222)
|..+...+.++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..
T Consensus 1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~ 80 (216)
T PLN03110 1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 80 (216)
T ss_pred CCCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence 55666777889999999999999999999999999988788899999988888999998899999999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC
Q 027503 81 YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL 160 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (222)
+++.++++|+|||++++.+|+.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.
T Consensus 81 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~ 160 (216)
T PLN03110 81 YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEAT 160 (216)
T ss_pred HhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999999999888776679999999999998777888889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhh
Q 027503 161 NVEDAFLQMINQIHQTTIQKS 181 (222)
Q Consensus 161 gi~~~~~~l~~~i~~~~~~~~ 181 (222)
|++++|++++..+.+....+.
T Consensus 161 ~v~~lf~~l~~~i~~~~~~~~ 181 (216)
T PLN03110 161 NVEKAFQTILLEIYHIISKKA 181 (216)
T ss_pred CHHHHHHHHHHHHHHHhhccc
Confidence 999999999999987654333
No 8
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=226.62 Aligned_cols=175 Identities=51% Similarity=0.800 Sum_probs=166.9
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
+.+.+|++++|+.|||||+|+.+|....|.+.+..|.++++....+.++++.+++++|||+|++.|++++..|++.+-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
|+|||++..++|..+..|+..++.+..+...++|++||+||...+.++.++.+.|++++++.++++||++++|+.|+|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998777999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhh
Q 027503 169 MINQIHQTTIQKSLC 183 (222)
Q Consensus 169 l~~~i~~~~~~~~~~ 183 (222)
....+++.....--.
T Consensus 163 ta~~Iy~~~q~g~~~ 177 (216)
T KOG0098|consen 163 TAKEIYRKIQDGVFD 177 (216)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999876654433
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.7e-36 Score=231.00 Aligned_cols=172 Identities=33% Similarity=0.621 Sum_probs=157.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
++++.+||+|+|+.|||||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 46788999999999999999999999988887777888888877888889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
+|+|||++++.+|+.+..|+..+..... +.|++|||||+|+.+.+.++.++++.++...+++|+++||++|.||+++|+
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 9999999999999999999999977654 599999999999988788889999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhh
Q 027503 168 QMINQIHQTTIQK 180 (222)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (222)
++++.+.......
T Consensus 161 ~l~~~i~~~~~~~ 173 (189)
T cd04121 161 ELARIVLMRHGRP 173 (189)
T ss_pred HHHHHHHHhcCCC
Confidence 9999887655533
No 10
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.9e-36 Score=231.24 Aligned_cols=195 Identities=32% Similarity=0.582 Sum_probs=163.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888999888887888887 7788999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCCHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~ 166 (222)
||++++.+|+.+..|+..+.... ...+|++||+||+|+.+.+.+..+++..++...+ ..++++||++|.|+.++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876542 2568999999999997667778889999999998 689999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhccCCCcCCCCCCCCCCCcceeeccccccccccCCcc
Q 027503 167 LQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSCC 220 (222)
Q Consensus 167 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 220 (222)
++|++.+.+........... .....+..++++.+++. ++||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAETP------------EDGSVIDLKQTTTKKKS-KGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcCC------------Ccccccccccceecccc-CCCC
Confidence 99999987654433332211 11233444555555555 6898
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3e-36 Score=218.82 Aligned_cols=172 Identities=35% Similarity=0.652 Sum_probs=160.0
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
.+...+||+++|++|+|||||++++....|...+..|++.++-.+.+.+++..+.+++|||+|+++|.++...+++++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCCCC--CCCCCHHHHHHHHHHcC-CeEEEEccccCC
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSDLTH--SREVNEEEGKILAETEG-LYFMETSAMQNL 160 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 160 (222)
+++|||++++.+|+.+..|..++..... ...|++|+|||+|+.+ .+.++...++.|+...+ +||+++||+...
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999876653 5689999999999976 27899999999998876 899999999999
Q ss_pred CHHHHHHHHHHHHHHhhhh
Q 027503 161 NVEDAFLQMINQIHQTTIQ 179 (222)
Q Consensus 161 gi~~~~~~l~~~i~~~~~~ 179 (222)
+|.+.|+.+.+.+++....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999998877654
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1e-35 Score=228.83 Aligned_cols=167 Identities=40% Similarity=0.759 Sum_probs=153.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+.|+++|+.|||||||+++|..+.|...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899988888888999998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccccCCCHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
|++++.+|+.+..|+..+......++|++||+||+|+.+.+.+..+++..++... ++.|+++||++|.||.++|+++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887776667999999999999877888888999999875 789999999999999999999999
Q ss_pred HHHHhhhh
Q 027503 172 QIHQTTIQ 179 (222)
Q Consensus 172 ~i~~~~~~ 179 (222)
.+......
T Consensus 161 ~~~~~~~~ 168 (202)
T cd04120 161 DILKKMPL 168 (202)
T ss_pred HHHHhCcc
Confidence 88765433
No 13
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-36 Score=211.51 Aligned_cols=179 Identities=42% Similarity=0.735 Sum_probs=168.5
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
+++.+.+||+++|..|+|||.|+++|..+.|++....++++++-.+++.+++..+++++|||+|+++|++++.+|++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
++|+|||++...+|+-+..|+.++..+...++--++|+||+|+.+.++++....++|+......|.++||++..+++.+|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999998888889999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhc
Q 027503 167 LQMINQIHQTTIQKSLCAK 185 (222)
Q Consensus 167 ~~l~~~i~~~~~~~~~~~~ 185 (222)
..+.-++......+.....
T Consensus 162 ~~~a~rli~~ar~~d~v~~ 180 (213)
T KOG0095|consen 162 LDLACRLISEARQNDLVNN 180 (213)
T ss_pred HHHHHHHHHHHHhccchhh
Confidence 9998887766666655433
No 14
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=4.5e-35 Score=225.52 Aligned_cols=170 Identities=45% Similarity=0.738 Sum_probs=153.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
+++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45789999999999999999999999998888888988888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
++|||++++++|+.+..|+..+..... ..|++||+||+|+.+...+..+++..++...+++|+++||++|.|+.++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 999999999999999999998876554 4899999999999876777788888899888999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 027503 169 MINQIHQTTIQ 179 (222)
Q Consensus 169 l~~~i~~~~~~ 179 (222)
|++.+......
T Consensus 162 l~~~~~~~~~~ 172 (199)
T cd04110 162 ITELVLRAKKD 172 (199)
T ss_pred HHHHHHHhhhc
Confidence 99998755433
No 15
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=212.43 Aligned_cols=172 Identities=48% Similarity=0.777 Sum_probs=164.1
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
-+++..++.+|+|++|+|||+|+.+|....|...|..|+++++..+++.++|..+++.|||++|++.|+.+...|+++.+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
++++|||+++.+||.++.+|++.++...+. +|-++||||.|.++.+.+..++++.|+...++.+|++|++.+.++..+|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNCDS-VPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcCcc-ccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 999999999999999999999999988875 8999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 027503 167 LQMINQIHQTTIQ 179 (222)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (222)
.-|.+.++.....
T Consensus 162 ~cit~qvl~~k~r 174 (198)
T KOG0079|consen 162 HCITKQVLQAKLR 174 (198)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998877633
No 16
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-36 Score=209.27 Aligned_cols=177 Identities=41% Similarity=0.774 Sum_probs=168.5
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (222)
-.+.++++.+|++++|+..+|||||+.++.+..|......|.|+++..+++.-..+.+++++|||.|++.++.++..+++
T Consensus 13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR 92 (193)
T KOG0093|consen 13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR 92 (193)
T ss_pred cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence 34678899999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
+++++|++||+++.+||..++.|.-.+..+.....|+|+|+||||+.+++.++.+..+.++.++|+.||++||+.+.++.
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk 172 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVK 172 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q 027503 164 DAFLQMINQIHQTTIQK 180 (222)
Q Consensus 164 ~~~~~l~~~i~~~~~~~ 180 (222)
.+|+.++..+.+....+
T Consensus 173 ~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 173 QVFERLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999998776553
No 17
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-34 Score=220.29 Aligned_cols=169 Identities=46% Similarity=0.782 Sum_probs=153.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988778888888888788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
|++++.+|..+..|+..+........|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|+++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766668999999999998777788888889998889999999999999999999999999
Q ss_pred HHHhhhhhh
Q 027503 173 IHQTTIQKS 181 (222)
Q Consensus 173 i~~~~~~~~ 181 (222)
+..+.....
T Consensus 161 ~~~~~~~~~ 169 (188)
T cd04125 161 IIKRLEEQE 169 (188)
T ss_pred HHHHhhcCc
Confidence 876544433
No 18
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.4e-34 Score=223.21 Aligned_cols=171 Identities=46% Similarity=0.743 Sum_probs=152.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
+.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 4689999999999999999999999988888888888887777776 466789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
+|||++++.+|+++..|+..+.... ...+|++||+||+|+.+.+.+..++...++..++++|+++||++|.|+.++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999887664 345788999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhh
Q 027503 169 MINQIHQTTIQKS 181 (222)
Q Consensus 169 l~~~i~~~~~~~~ 181 (222)
|++.+.+......
T Consensus 161 l~~~~~~~~~~~~ 173 (211)
T cd04111 161 LTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHhhcCC
Confidence 9999887755443
No 19
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.3e-35 Score=209.32 Aligned_cols=172 Identities=47% Similarity=0.739 Sum_probs=159.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
-+.|.++++++|++-+|||+|++.+..+.+++-+.||++++++.+.+.+ +|..+++++|||+|+++|++++.+|++++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 4578999999999999999999999999999999999999998777666 677899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
++++|||+++.+||+.+..|+.+...+.. .++-+++||+|+|+...+.++.++++.++..+|..|+++|+++|.|+.+
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 99999999999999999999998766653 4455678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 027503 165 AFLQMINQIHQTTIQ 179 (222)
Q Consensus 165 ~~~~l~~~i~~~~~~ 179 (222)
.|..|.+.+.....+
T Consensus 164 AF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 164 AFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988776
No 20
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=210.51 Aligned_cols=212 Identities=33% Similarity=0.602 Sum_probs=182.0
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (222)
.....+.+.|||+++|..-+|||||+-++..+.|...+..|..-.+..+.+.+++....+.||||+|+++|.++-+-|++
T Consensus 5 ~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYR 84 (218)
T KOG0088|consen 5 TNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYR 84 (218)
T ss_pred ccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEe
Confidence 34556789999999999999999999999999999888888877788888999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
+++++++|||++|..||+.+..|..+++......+-++||+||+||.+++.++..++..++...|..|+++||+++.||.
T Consensus 85 gSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 85 GSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred CCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccCCCcCCCCCCCCCCCcceeecccc-ccccccCCccc
Q 027503 164 DAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHE-VTATKQSSCCY 221 (222)
Q Consensus 164 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~cc~ 221 (222)
++|+.|..+..++...+.+.. ++-++.+++-...+...+.. .-+.-.++||.
T Consensus 165 elFe~Lt~~MiE~~s~~qr~~------~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC~ 217 (218)
T KOG0088|consen 165 ELFESLTAKMIEHSSQRQRTR------SPLSTQPPSTNRSIRLIDNEAEAERSGKRCCR 217 (218)
T ss_pred HHHHHHHHHHHHHhhhccccc------CCcCCCCCCcccchhccCCCcccccccCCccC
Confidence 999999999888776655432 11233344444455555554 33344456885
No 21
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.5e-34 Score=220.98 Aligned_cols=165 Identities=35% Similarity=0.545 Sum_probs=144.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
||+|+|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999988877777776444 3556778888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 94 ITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+...++..++...+++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866542 5689999999999987777788888888988999999999999999999999999
Q ss_pred HHHHHhhhh
Q 027503 171 NQIHQTTIQ 179 (222)
Q Consensus 171 ~~i~~~~~~ 179 (222)
+.+.+.+..
T Consensus 160 ~~l~~~~~~ 168 (190)
T cd04144 160 RALRQQRQG 168 (190)
T ss_pred HHHHHhhcc
Confidence 887644444
No 22
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.8e-34 Score=223.23 Aligned_cols=187 Identities=29% Similarity=0.483 Sum_probs=153.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+|+|.+|||||||+++|..+.+.. ..++.+.++....+ ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 46777666544333 3468999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH-------------------SREVNEEEGKILAETEG----- 148 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 148 (222)
|++++++|+.+..|+..+......++|++||+||+|+.+ .+.+..+++..++...+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999998888877666556699999999999975 57788899999998876
Q ss_pred ---------CeEEEEccccCCCHHHHHHHHHHHHHHhhhhhhhhhccCCCcCCCCCCCCCCCcceeeccccccccccCCc
Q 027503 149 ---------LYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSC 219 (222)
Q Consensus 149 ---------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 219 (222)
++|+++||++|.||+++|..+++.+.+...++..+.. +. ...-.++.+..+|++|
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~ 219 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEAN--RT--------------QGTVNLPNPKRSKSKC 219 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh--hh--------------hccccCCCcccCCCCC
Confidence 6899999999999999999999999876665554311 11 1123445577777999
Q ss_pred c
Q 027503 220 C 220 (222)
Q Consensus 220 c 220 (222)
|
T Consensus 220 ~ 220 (220)
T cd04126 220 C 220 (220)
T ss_pred C
Confidence 8
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3.7e-34 Score=214.19 Aligned_cols=164 Identities=53% Similarity=0.838 Sum_probs=151.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+++|++|||||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999998888888888888777888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+.++|..+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776666899999999999887778888999999999999999999999999999999998
Q ss_pred HHHH
Q 027503 172 QIHQ 175 (222)
Q Consensus 172 ~i~~ 175 (222)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8754
No 24
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.2e-34 Score=218.75 Aligned_cols=167 Identities=44% Similarity=0.755 Sum_probs=149.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
+||+|+|++|||||||+++|.+..+.. .+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 5567777777777788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
||++++.+++++..|+..+......++|+++|+||+|+...+.+..++...++...+++|+++||++|.|++++|++|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998877667999999999999766777778888899889999999999999999999999999
Q ss_pred HHHHhhhh
Q 027503 172 QIHQTTIQ 179 (222)
Q Consensus 172 ~i~~~~~~ 179 (222)
.+.+....
T Consensus 161 ~~~~~~~~ 168 (191)
T cd04112 161 ELKHRKYE 168 (191)
T ss_pred HHHHhccc
Confidence 98766433
No 25
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.8e-34 Score=221.99 Aligned_cols=169 Identities=25% Similarity=0.459 Sum_probs=150.0
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+....+||+++|+.|||||+|+++|..+.|...+.|+.+.++. ..+.+++..+.+.||||+|++.|..++..+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 3357899999999999999999999999999889899876654 467889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEE
Q 027503 88 ALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEGL-YFME 153 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 153 (222)
+|+|||++++.+|+.+ ..|+..+..... ..|++||+||+|+.+ .+.++.++++.++...++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999984 789999887654 489999999999864 256888999999999998 6999
Q ss_pred EccccCC-CHHHHHHHHHHHHHHhhh
Q 027503 154 TSAMQNL-NVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 154 ~Sa~~~~-gi~~~~~~l~~~i~~~~~ 178 (222)
|||++|. ||+++|..++..+.+...
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 9999998 899999999998875433
No 26
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=6.7e-34 Score=213.05 Aligned_cols=166 Identities=52% Similarity=0.884 Sum_probs=152.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
++.+||+++|++|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999998888899988887788888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
+|||++++.+|..+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766679999999999998777777888888999999999999999999999999999
Q ss_pred HHHHHH
Q 027503 170 INQIHQ 175 (222)
Q Consensus 170 ~~~i~~ 175 (222)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998764
No 27
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2e-33 Score=217.95 Aligned_cols=171 Identities=52% Similarity=0.828 Sum_probs=155.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
+++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..++..+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45779999999999999999999999988888888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
++|||++++.++..+..|+..+........|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|++
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887666566999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 027503 169 MINQIHQTTIQ 179 (222)
Q Consensus 169 l~~~i~~~~~~ 179 (222)
+++.+.+....
T Consensus 163 l~~~~~~~~~~ 173 (210)
T PLN03108 163 TAAKIYKKIQD 173 (210)
T ss_pred HHHHHHHHhhh
Confidence 99999866543
No 28
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=8.1e-34 Score=215.21 Aligned_cols=164 Identities=32% Similarity=0.531 Sum_probs=147.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
....+||+++|++|||||||+++|..+.|...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45678999999999999999999999999888888887555 46678889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 027503 89 LLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEGL-YFMET 154 (222)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 154 (222)
|+|||++++.+|+.+ ..|+..+..... ..|++||+||+|+.+ .+.++.+++..++...++ +|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 789999987764 589999999999864 246889999999999995 89999
Q ss_pred ccccCCC-HHHHHHHHHHHHH
Q 027503 155 SAMQNLN-VEDAFLQMINQIH 174 (222)
Q Consensus 155 Sa~~~~g-i~~~~~~l~~~i~ 174 (222)
||++|.| |+++|+.+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999998654
No 29
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.3e-33 Score=219.88 Aligned_cols=164 Identities=34% Similarity=0.546 Sum_probs=149.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888899999998888888864 578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
||++++++|+.+..|+..+..... .++|+++|+||+|+.+.+.+..+....++...+++++++||++|.|+.++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999877652 35789999999999877788888899999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027503 169 MINQIHQT 176 (222)
Q Consensus 169 l~~~i~~~ 176 (222)
++..+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998865
No 30
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=214.84 Aligned_cols=168 Identities=34% Similarity=0.553 Sum_probs=147.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3468999999999999999999999988777777776554 566778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+...+..+++..++...+++++++||++|.|+.++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999998887654 346899999999999776677777888888888899999999999999999999
Q ss_pred HHHHHHHhhh
Q 027503 169 MINQIHQTTI 178 (222)
Q Consensus 169 l~~~i~~~~~ 178 (222)
+++.+.+...
T Consensus 162 l~~~l~~~~~ 171 (189)
T PTZ00369 162 LVREIRKYLK 171 (189)
T ss_pred HHHHHHHHhh
Confidence 9988865433
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.8e-33 Score=211.80 Aligned_cols=163 Identities=33% Similarity=0.520 Sum_probs=146.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+|+|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999878878876444 45577888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++..+++..+++|+++||++|.||+++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998988887654 35699999999999987778888899999999999999999999999999999999
Q ss_pred HHHHH
Q 027503 171 NQIHQ 175 (222)
Q Consensus 171 ~~i~~ 175 (222)
+.+.+
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 88775
No 32
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.2e-33 Score=213.03 Aligned_cols=160 Identities=34% Similarity=0.590 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|+|||||+.++..+.|...+.+|.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888889887655 456778888999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCCC----------CCCHHHHHHHHHHcCC-eEEEEccccCC
Q 027503 93 DITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHSR----------EVNEEEGKILAETEGL-YFMETSAMQNL 160 (222)
Q Consensus 93 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 160 (222)
|++++.||+.+ ..|+..+..... ++|++|||||+|+.+.+ .+..+++..++...++ .|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 689999877654 59999999999996542 4788999999999998 69999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027503 161 NVEDAFLQMINQIH 174 (222)
Q Consensus 161 gi~~~~~~l~~~i~ 174 (222)
||+++|+.+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 33
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.8e-33 Score=212.02 Aligned_cols=167 Identities=38% Similarity=0.709 Sum_probs=149.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC----------CeEEEEEEEeCCChhhhhhhhH
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG----------DKLIKAQIWDTAGQERFRAITS 79 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~ 79 (222)
++.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+. +..+.+.+||+||++.+..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 578999999999999999999999999988888888888776666554 4568899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ 158 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (222)
.+++++|++++|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999887654 34589999999999987777888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 027503 159 NLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~~~ 176 (222)
|.|++++|++|++.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887653
No 34
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.7e-33 Score=217.08 Aligned_cols=203 Identities=26% Similarity=0.469 Sum_probs=158.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+|+|++|||||+|+++|..+.|+..+.|+.+.++. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999889999876654 56788899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503 93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETSAMQ 158 (222)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 158 (222)
|++++++|+.+. .|...+.... ...|++||+||+|+.+. ..++.+++..++.+.++ +|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999984 5776665544 45999999999999642 13677889999999995 899999999
Q ss_pred CC-CHHHHHHHHHHHHHHhhhhhhhhhccCCCcCCCCCCCCCCCcceeeccccccccccCCc
Q 027503 159 NL-NVEDAFLQMINQIHQTTIQKSLCAKMNDKTATSNCNNLGGGKEIINIDHEVTATKQSSC 219 (222)
Q Consensus 159 ~~-gi~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 219 (222)
+. ||.++|+.++..++..... .... ...++.++-....+++..+....+..+..+.++|
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGHR-QLRR-TDSRRGLQRSAQLSGRPDRHGNEGEIHKDRAKSC 219 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccCC-cccc-ccccccccccccCCCcccccccccccccccCCcc
Confidence 88 4999999999987654432 2211 1222223333334445555444444555554455
No 35
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=4e-33 Score=208.52 Aligned_cols=163 Identities=52% Similarity=0.829 Sum_probs=150.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+++|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999998888888888888888888888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
||+++++++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|+++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999988776566899999999999877778888899999999999999999999999999999998
Q ss_pred HHH
Q 027503 172 QIH 174 (222)
Q Consensus 172 ~i~ 174 (222)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 36
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-34 Score=200.99 Aligned_cols=179 Identities=49% Similarity=0.761 Sum_probs=169.1
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
.+.+++.+|++++|+.|+|||.|+++|+...|......++++++..+.+.++++.+++++|||+|+++|++..+.|++++
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
-+.++|||+++.++|..+..|+..++......+-+++++||.||...++++..++..|+.+..+.+.++|+.+|+++.|.
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999999999999998877888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhh
Q 027503 166 FLQMINQIHQTTIQKSLCA 184 (222)
Q Consensus 166 ~~~l~~~i~~~~~~~~~~~ 184 (222)
|-...+.+......-+..+
T Consensus 163 Fl~c~~tIl~kIE~GElDP 181 (214)
T KOG0086|consen 163 FLKCARTILNKIESGELDP 181 (214)
T ss_pred HHHHHHHHHHHHhhcCCCH
Confidence 9999999887766555443
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.4e-33 Score=208.11 Aligned_cols=160 Identities=41% Similarity=0.767 Sum_probs=148.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||++++.++.+.+.+.++.+.+.....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888899888888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
|++++.+|+.+..|+..+........|+++|+||.|+.+.+.+..+++..+++..+++|+++||++|.|++++|++|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887766669999999999998778888889999999999999999999999999999999864
No 38
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=5.8e-33 Score=207.59 Aligned_cols=163 Identities=41% Similarity=0.774 Sum_probs=148.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777777777888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
|++++.+++.+..|+..+........|+++|+||+|+.+.+....+....++...+++++++||++|.|+.++|++++..
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999887765668999999999998777777788888888889999999999999999999999987
Q ss_pred HHH
Q 027503 173 IHQ 175 (222)
Q Consensus 173 i~~ 175 (222)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 653
No 39
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=4.7e-33 Score=207.19 Aligned_cols=161 Identities=39% Similarity=0.707 Sum_probs=154.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||++|++.+..++..++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 94 ITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
++++++|+.+..|+..+........|++||+||.|+.+.+.++.++++.++..++++|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998886699999999999988789999999999999999999999999999999999999987
Q ss_pred H
Q 027503 174 H 174 (222)
Q Consensus 174 ~ 174 (222)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 40
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=7.8e-33 Score=206.66 Aligned_cols=163 Identities=67% Similarity=1.049 Sum_probs=150.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
+.+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 56899999999999999999999999888888999888888889999988899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|+.++|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887766699999999999987777788888889888899999999999999999999998
Q ss_pred HHH
Q 027503 171 NQI 173 (222)
Q Consensus 171 ~~i 173 (222)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 41
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.2e-33 Score=213.17 Aligned_cols=163 Identities=27% Similarity=0.519 Sum_probs=143.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..+||+++|+.|||||||+++|..+.|...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 358999999999999999999999999888888887554 3456788888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcc
Q 027503 91 VYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFMETSA 156 (222)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 156 (222)
|||++++.+|+.+. .|+..+..... ++|++||+||.|+.+. +.+..+++..++...+ ++|+++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999996 58887766543 5999999999999653 2366778899999988 58999999
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q 027503 157 MQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 157 ~~~~gi~~~~~~l~~~i~~ 175 (222)
++|.|+.++|+++++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 42
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.9e-33 Score=210.92 Aligned_cols=161 Identities=30% Similarity=0.527 Sum_probs=143.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+++|++|||||||+++|.++.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999888888886655 45778889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEccc
Q 027503 92 YDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEGL-YFMETSAM 157 (222)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 157 (222)
||++++.+|+.+ ..|+..+..... ..|+++|+||+|+.+ .+.++.+++.+++...++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 789999987764 589999999999964 245888999999999997 79999999
Q ss_pred cCCC-HHHHHHHHHHHHH
Q 027503 158 QNLN-VEDAFLQMINQIH 174 (222)
Q Consensus 158 ~~~g-i~~~~~~l~~~i~ 174 (222)
+|.+ |.++|..+++.++
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998544
No 43
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=7.2e-33 Score=206.91 Aligned_cols=162 Identities=32% Similarity=0.659 Sum_probs=148.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999998888888899899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcC-----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCS-----SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+......++...++...+++++++||++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877653 4689999999999976566778888888888899999999999999999999
Q ss_pred HHHHHHH
Q 027503 168 QMINQIH 174 (222)
Q Consensus 168 ~l~~~i~ 174 (222)
+|++.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 44
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.2e-32 Score=206.45 Aligned_cols=167 Identities=54% Similarity=0.845 Sum_probs=152.6
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
+++.+||+|+|.+|||||||++++.+..+...+.++.+.+.....+..++....+.+||+||++.+..++..+++.+|++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 46779999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
++|||++++.++..+..|+..+......++|++||+||+|+.....+..++...++...+++++++|++++.|++++|.+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998776666999999999999866777888888899889999999999999999999999
Q ss_pred HHHHHHH
Q 027503 169 MINQIHQ 175 (222)
Q Consensus 169 l~~~i~~ 175 (222)
+++.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988764
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-32 Score=205.33 Aligned_cols=163 Identities=48% Similarity=0.820 Sum_probs=147.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
++.+||+++|++|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 168 (222)
+|||++++.++..+..|+..+......++|+++|+||+|+.+.+....+.+..++...+. .++++||++|.|+.++|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999877666799999999999987777777888888888875 6899999999999999999
Q ss_pred HHHH
Q 027503 169 MINQ 172 (222)
Q Consensus 169 l~~~ 172 (222)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9865
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.9e-32 Score=207.98 Aligned_cols=163 Identities=27% Similarity=0.505 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|+.|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999998888888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC-----CCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS-----REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
|++++.+|+++..|+..+........| ++|+||+|+... .....++...++...+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998776555567 678999998531 11224566788888899999999999999999999
Q ss_pred HHHHHHHHh
Q 027503 168 QMINQIHQT 176 (222)
Q Consensus 168 ~l~~~i~~~ 176 (222)
++++.+.+.
T Consensus 160 ~l~~~l~~~ 168 (182)
T cd04128 160 IVLAKAFDL 168 (182)
T ss_pred HHHHHHHhc
Confidence 999988753
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.7e-32 Score=212.85 Aligned_cols=164 Identities=34% Similarity=0.579 Sum_probs=146.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
+..+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 68899999999999999999999999998888899988888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
+|||++++.+|+.+..|+..+.... .++|++||+||+|+.+ +.+..+.. .++...+++|+++||++|.|+.++|++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999988765 4599999999999864 33444444 6777788999999999999999999999
Q ss_pred HHHHHHh
Q 027503 170 INQIHQT 176 (222)
Q Consensus 170 ~~~i~~~ 176 (222)
++.+.+.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9988644
No 48
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3.1e-32 Score=202.64 Aligned_cols=160 Identities=55% Similarity=0.874 Sum_probs=147.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
|++++.++..+..|+..+......++|+++|+||+|+.....+..+++..++...+++++++|++++.|+.++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877776779999999999998777788888999999999999999999999999999999875
No 49
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.4e-32 Score=203.36 Aligned_cols=160 Identities=36% Similarity=0.561 Sum_probs=141.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777765 445566788888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|+.++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887664 356899999999999776667777788888888899999999999999999999987
Q ss_pred HH
Q 027503 172 QI 173 (222)
Q Consensus 172 ~i 173 (222)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 50
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.7e-32 Score=205.94 Aligned_cols=159 Identities=28% Similarity=0.508 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+|+|++|||||||+++|..+.|...+.|+.+..+. ..+..++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888888876554 45677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503 93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFMETSAMQ 158 (222)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 158 (222)
|++++.+|+.+. .|+..+.... .++|++||+||+|+.+. +.+..+++..++...+ +.|+++||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999996 5888887654 35899999999998653 4567788888988887 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQI 173 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i 173 (222)
|.|+.++|+.++..+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998854
No 51
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=7.5e-32 Score=206.51 Aligned_cols=164 Identities=34% Similarity=0.623 Sum_probs=143.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
+||+|+|++|||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.+||++|++.+..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 5677777777777889999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS----REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
||++++.+++.+..|+..+.... .+.|+++|+||+|+... ..+..+++..++...+++++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887654 35899999999998642 34555677888888889999999999999999999
Q ss_pred HHHHHHHHhh
Q 027503 168 QMINQIHQTT 177 (222)
Q Consensus 168 ~l~~~i~~~~ 177 (222)
++++.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999887543
No 52
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.1e-31 Score=200.03 Aligned_cols=163 Identities=59% Similarity=0.925 Sum_probs=149.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++|.+..+.....++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888788888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
|++++.+++.+..|+..+..+...++|+++|+||+|+........+.+..++...+++++++|+++|.|+.++|+++++.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887775679999999999997766777888888999899999999999999999999999988
Q ss_pred HHH
Q 027503 173 IHQ 175 (222)
Q Consensus 173 i~~ 175 (222)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 764
No 53
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=6e-32 Score=201.74 Aligned_cols=162 Identities=34% Similarity=0.552 Sum_probs=142.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998888777777775544 45677888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988886653 45699999999999987666777777888888889999999999999999999998
Q ss_pred HHHH
Q 027503 171 NQIH 174 (222)
Q Consensus 171 ~~i~ 174 (222)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 7653
No 54
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=9.2e-32 Score=200.13 Aligned_cols=159 Identities=36% Similarity=0.642 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC--CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG--DKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+. +..+.+.+|||||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888888888877777776 777899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
|||++++++++.+..|+..+..... ++|+++|+||+|+.....+..+++..++...+++++++|+++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999998876544 499999999999987777788888899999999999999999999999999987
Q ss_pred HH
Q 027503 171 NQ 172 (222)
Q Consensus 171 ~~ 172 (222)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 55
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.6e-31 Score=200.86 Aligned_cols=162 Identities=35% Similarity=0.623 Sum_probs=144.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998889999888888888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 94 ITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSRE--VNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
+++++++..+..|+..+.... ....|+++|+||+|+.+... ...+++..++...+.+++++||++|.|+.++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999876543 44578999999999865433 345667788888889999999999999999999999
Q ss_pred HHHHH
Q 027503 171 NQIHQ 175 (222)
Q Consensus 171 ~~i~~ 175 (222)
..+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88764
No 56
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.6e-31 Score=200.53 Aligned_cols=163 Identities=35% Similarity=0.674 Sum_probs=145.9
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
++..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45789999999999999999999999998888888888887778888899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCCHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNVE 163 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 163 (222)
++|||++++.+++.+..|...+.... ..++|+++|+||+|+. .+.+..+++..++...+ .+++++||++|.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999998876544 2458999999999986 46667788889988887 489999999999999
Q ss_pred HHHHHHHHH
Q 027503 164 DAFLQMINQ 172 (222)
Q Consensus 164 ~~~~~l~~~ 172 (222)
++|+.+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999865
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=9.6e-32 Score=200.38 Aligned_cols=161 Identities=35% Similarity=0.540 Sum_probs=141.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||.+.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999998877767664 55567788888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
||++++.++.++..|+..+.... ..++|+++|+||+|+.+...+...+...++...+++++++||++|.|+.++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887654 35699999999999976666677778888888889999999999999999999998
Q ss_pred HHH
Q 027503 171 NQI 173 (222)
Q Consensus 171 ~~i 173 (222)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 58
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.6e-31 Score=203.71 Aligned_cols=166 Identities=30% Similarity=0.523 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
+||+|+|++|||||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||||++.+..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999988877777666543 35554 6778999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHH
Q 027503 92 YDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS----REVNEEEGKILAETEGL-YFMETSAMQNLNVEDA 165 (222)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~ 165 (222)
||++++.+|+++. .|+..+.... .++|+++|+||+|+... +.+...++..++...++ +++++||++|.|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 4887776544 45899999999998653 24667788899999988 8999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 027503 166 FLQMINQIHQTTIQK 180 (222)
Q Consensus 166 ~~~l~~~i~~~~~~~ 180 (222)
|+.+++.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999887554443
No 59
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=6.1e-31 Score=204.29 Aligned_cols=170 Identities=46% Similarity=0.743 Sum_probs=147.6
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
..+....+||+|+|++|||||||+++|.+..+. ...++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 344567889999999999999999999998764 5567777777777888888888999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHH-HHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 86 LGALLVYDITRRATFENTKK-WLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
|++|+|||++++++|+.+.. |...+.... ..+.|+++|+||+|+.....+..++...++...+++|+++||++|.|++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999875 666665443 3458999999999998767777788888888899999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027503 164 DAFLQMINQIHQT 176 (222)
Q Consensus 164 ~~~~~l~~~i~~~ 176 (222)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (211)
T PLN03118 167 QCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 60
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.6e-31 Score=200.10 Aligned_cols=160 Identities=34% Similarity=0.629 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888788888888887777778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
|+++++++..+..|+..+..... ++|+++|+||+|+.+ .... .....++...+++++++||++|.|+.++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987765 599999999999974 3333 33456777778899999999999999999999988
Q ss_pred HHH
Q 027503 173 IHQ 175 (222)
Q Consensus 173 i~~ 175 (222)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 61
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=9.5e-32 Score=205.40 Aligned_cols=160 Identities=35% Similarity=0.548 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
.||+|+|++|||||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998877788766543 45667788889999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503 93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETEG-LYFMETSAMQ 158 (222)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 158 (222)
|++++.+|+.+. .|+..+..... +.|+++|+||+|+.+.. .+..++...++...+ ++|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999886 58888876543 58999999999997543 345666778887776 7899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQIH 174 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~ 174 (222)
|.|++++|+++++.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998887
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2e-31 Score=198.74 Aligned_cols=161 Identities=41% Similarity=0.614 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+|+|++|||||||+++|.+..+...+.++.+ +.....+..++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999988777767665 334566677888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
|++++++++.+..|+..+.... ....|+++|+||+|+.+.+.+..+.+..++...+++++++||++|.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999988876654 346899999999999876677778888888888999999999999999999999998
Q ss_pred HHH
Q 027503 172 QIH 174 (222)
Q Consensus 172 ~i~ 174 (222)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 664
No 63
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.4e-31 Score=198.09 Aligned_cols=160 Identities=36% Similarity=0.560 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++|.+..+.+...++.+.+.....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988877777777777777788888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
|++++.+++.+..|+..+..... +.|+++|+||+|+... ..++...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998876543 4899999999998532 1344556677778999999999999999999999988
Q ss_pred HHHh
Q 027503 173 IHQT 176 (222)
Q Consensus 173 i~~~ 176 (222)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8765
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.7e-31 Score=197.45 Aligned_cols=160 Identities=42% Similarity=0.724 Sum_probs=146.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++|++..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
|++++.+|..+..|+..+......+.|+++|+||+|+.+......++...++...+++++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876665569999999999997667777888888888889999999999999999999999864
No 65
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-33 Score=198.79 Aligned_cols=182 Identities=36% Similarity=0.627 Sum_probs=162.8
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC---------CeEEEEEEEeCCChhhhh
Q 027503 5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG---------DKLIKAQIWDTAGQERFR 75 (222)
Q Consensus 5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~ 75 (222)
.+.+++|.+|.+.+|++|+|||+|+.++..+.|......|+++++..+.+-++ +..+.+++|||+|+++|+
T Consensus 2 ~~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFR 81 (219)
T KOG0081|consen 2 GDGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFR 81 (219)
T ss_pred CCccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHH
Confidence 46788999999999999999999999999999999999999999887776652 345788999999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027503 76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET 154 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (222)
+++..++++|=+++++||+++..||.+++.|+..+..+. -++.-+++++||+|+++.+.++.+.+.+++..+++|||++
T Consensus 82 SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 82 SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 999999999999999999999999999999999987765 3446788899999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027503 155 SAMQNLNVEDAFLQMINQIHQTTIQKSLCAKM 186 (222)
Q Consensus 155 Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~ 186 (222)
||-+|.+|.+.++.+++.++++..+---+...
T Consensus 162 SA~tg~Nv~kave~LldlvM~Rie~~v~~s~~ 193 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLVMKRIEQCVEKSEI 193 (219)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999877654443333
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.7e-31 Score=198.56 Aligned_cols=158 Identities=34% Similarity=0.501 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998777777765433 445666777789999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
|++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++|+++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999888876542 568999999999997766777778888888888999999999999999999998
Q ss_pred HH
Q 027503 170 IN 171 (222)
Q Consensus 170 ~~ 171 (222)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 67
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-31 Score=185.27 Aligned_cols=181 Identities=50% Similarity=0.774 Sum_probs=169.1
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
..++.|.+|-+++|+-|+|||.|++.|....|-..-..++++++..+.+.+.+..+++++|||+|+++|+...+.|++++
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 45788999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
.+.++|||++.+.++..+..|+...+........+++++||.|+...+.++.+++++|+.+.|+.|+++|+++|.++.+.
T Consensus 85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 99999999999999999999999998888777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 027503 166 FLQMINQIHQTTIQKSLCAKM 186 (222)
Q Consensus 166 ~~~l~~~i~~~~~~~~~~~~~ 186 (222)
|-...+.++.....-.+.-+.
T Consensus 165 fle~akkiyqniqdgsldlna 185 (215)
T KOG0097|consen 165 FLETAKKIYQNIQDGSLDLNA 185 (215)
T ss_pred HHHHHHHHHHhhhcCcccccc
Confidence 999999999887766555333
No 68
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.4e-31 Score=200.59 Aligned_cols=158 Identities=31% Similarity=0.539 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+|+|++|||||||+.++..+.+...+.++.+ +.....+.+++..+.+.+|||+|++.+..++..++.++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999999888888874 444456678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503 93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFMETSAMQ 158 (222)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 158 (222)
|++++++|..+. .|+..+.... .+.|++||+||+|+.+. +.+..+++..++...+ ++|+++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 5888776654 35999999999999642 2477888999999988 4899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQ 172 (222)
Q Consensus 159 ~~gi~~~~~~l~~~ 172 (222)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998864
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=6e-31 Score=195.92 Aligned_cols=162 Identities=44% Similarity=0.787 Sum_probs=148.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+++|++|||||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998877778888778788888999899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
+|++++.++..+..|+..+.......+|+++++||+|+......+.++...++...+++++++|+++|.|+.++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776567999999999999866777788888889988999999999999999999999988
Q ss_pred HH
Q 027503 172 QI 173 (222)
Q Consensus 172 ~i 173 (222)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 70
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=4.4e-31 Score=198.34 Aligned_cols=162 Identities=37% Similarity=0.665 Sum_probs=146.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-hhhHhhhcCCcEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-AITSSYYRGALGALL 90 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i~ 90 (222)
.+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999887788888888888888889988999999999999886 578889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc---CCCHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ---NLNVEDAF 166 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~ 166 (222)
|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++|+++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887764 45699999999999987777888888999999999999999999 89999999
Q ss_pred HHHHHHH
Q 027503 167 LQMINQI 173 (222)
Q Consensus 167 ~~l~~~i 173 (222)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 71
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=5.3e-31 Score=195.63 Aligned_cols=160 Identities=33% Similarity=0.539 Sum_probs=139.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+++|++|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 3799999999999999999999998877777776544 356677888888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
||+++..++..+..|+..+.... ..+.|+++|+||+|+.+ +.....++..++...+++++++||++|.|++++|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999998988887664 35689999999999975 45566777888888899999999999999999999998
Q ss_pred HHH
Q 027503 171 NQI 173 (222)
Q Consensus 171 ~~i 173 (222)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 654
No 72
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=7.5e-31 Score=195.52 Aligned_cols=161 Identities=37% Similarity=0.572 Sum_probs=140.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988776666666533 345567788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+....++...+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35689999999999977666677778888888889999999999999999999998
Q ss_pred HHH
Q 027503 171 NQI 173 (222)
Q Consensus 171 ~~i 173 (222)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=4.1e-31 Score=203.04 Aligned_cols=167 Identities=21% Similarity=0.270 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhHhhhcC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--------AITSSYYRG 84 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~ 84 (222)
+||+|+|.+|||||||+++|.++.+...+.|+.+.+.+...+.+++..+.+.+|||||.+.+. ......+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888888777776777888888899999999965432 123445789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccccCC
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFC---SSCMAIVLVGNKSDLTHSREVNEEEGKILAE-TEGLYFMETSAMQNL 160 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 160 (222)
+|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..++...++. ..+++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887664 4569999999999997766666666776654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhh
Q 027503 161 NVEDAFLQMINQIHQTTIQ 179 (222)
Q Consensus 161 gi~~~~~~l~~~i~~~~~~ 179 (222)
|++++|+.+++.+..+-..
T Consensus 161 ~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 161 HILLLFKELLISATTRGRS 179 (198)
T ss_pred CHHHHHHHHHHHhhccCCC
Confidence 9999999999988754433
No 74
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2e-30 Score=192.53 Aligned_cols=161 Identities=39% Similarity=0.705 Sum_probs=144.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|+|||||+++|.+..+...+.++.+.......+...+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777677767777777778788889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
|++++.+++.+..|+..+......++|+++|+||+|+.....+..++...++...+++++++|++++.|+.++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888776679999999999998766777777888888889999999999999999999999876
Q ss_pred H
Q 027503 173 I 173 (222)
Q Consensus 173 i 173 (222)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.98 E-value=1.7e-30 Score=193.72 Aligned_cols=160 Identities=31% Similarity=0.589 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC--cCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD--EFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
+||+++|++|||||||+++|... .+...+.++.+.++....+... +..+.+.+|||||++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 6777788888888776666664 56789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
+|||++++.++..+..|+..+.... .++|+++|+||+|+.+...+....+..+....+++++++||++|.|+.++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998887765 448999999999997766777777777888888999999999999999999999
Q ss_pred HHHH
Q 027503 170 INQI 173 (222)
Q Consensus 170 ~~~i 173 (222)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8865
No 76
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.98 E-value=1.4e-30 Score=200.06 Aligned_cols=156 Identities=31% Similarity=0.583 Sum_probs=139.6
Q ss_pred EcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCCh
Q 027503 18 IGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRR 97 (222)
Q Consensus 18 lG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (222)
+|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||+|++.+..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888889998888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503 98 ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 98 ~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 176 (222)
.+|+.+..|+..+..... ++|+++|+||+|+.. +.+..+. ..++...++.|++|||++|.||.++|++|+..+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999987654 599999999999864 3444433 467788889999999999999999999999988643
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=3.1e-30 Score=193.65 Aligned_cols=164 Identities=37% Similarity=0.681 Sum_probs=145.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++|.+..+.....++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888887788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCCHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~ 167 (222)
|++++.+++.+..|...+..... .++|+++|+||+|+........++...+....+ ++++++|+++|.|+.++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999998888877655432 368999999999998656667777888888887 7899999999999999999
Q ss_pred HHHHHHHHh
Q 027503 168 QMINQIHQT 176 (222)
Q Consensus 168 ~l~~~i~~~ 176 (222)
++++.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988765
No 78
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=5.6e-30 Score=191.85 Aligned_cols=166 Identities=42% Similarity=0.766 Sum_probs=148.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
++.+.++|+++|++|||||||+++|.+..+.....++.+.+.....+.+.+..+.+.+||+||++.+...+..++..+|+
T Consensus 3 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 82 (169)
T cd04114 3 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA 82 (169)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 35678999999999999999999999888777777888777777788888888899999999999999988999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
+++|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+....+......+++++|+++|.|++++|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 83 LILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence 99999999999999999999988877766799999999999987777777777888887788999999999999999999
Q ss_pred HHHHHH
Q 027503 168 QMINQI 173 (222)
Q Consensus 168 ~l~~~i 173 (222)
++.+.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 998764
No 79
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=1.6e-30 Score=195.72 Aligned_cols=159 Identities=33% Similarity=0.569 Sum_probs=138.1
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeC
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDI 94 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (222)
|+|+|++|||||||+++|.++.+...+.++.... ....+..++..+.+.+|||||++.+..++..++..+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 6899999999999999999999988777776444 345677788888999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEccccCC
Q 027503 95 TRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETEGL-YFMETSAMQNL 160 (222)
Q Consensus 95 ~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 160 (222)
+++++|+.+. .|+..+..... ++|+++|+||+|+.... .+..+++..++...+. .++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 59888877654 59999999999996532 3677788889999986 89999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027503 161 NVEDAFLQMINQIHQ 175 (222)
Q Consensus 161 gi~~~~~~l~~~i~~ 175 (222)
|++++|+.+++.+++
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988753
No 80
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.8e-30 Score=197.82 Aligned_cols=158 Identities=28% Similarity=0.457 Sum_probs=129.8
Q ss_pred eeEEEEEcCCCCChHHHHH-HHhhCc-----CCCCCCCCcce-eeEEEE--------EEECCeEEEEEEEeCCChhhhhh
Q 027503 12 LFKAVMIGDSAVGKSNLLS-RFARDE-----FRLDSKPTIGV-EFAYRN--------IRVGDKLIKAQIWDTAGQERFRA 76 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~ 76 (222)
.+||+++|+.|||||||+. ++.+.. +...+.||.+. +.+... +.+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 555443 34556677752 322222 25678889999999999875 3
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCC-------------------CCCCC
Q 027503 77 ITSSYYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH-------------------SREVN 136 (222)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~ 136 (222)
+...+++++|++|+|||++++.+|+.+. .|+..+..... +.|+++|+||+|+.+ .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 5667899999999999999999999996 59888876653 589999999999964 36788
Q ss_pred HHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 137 EEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
.++++.+++..+++|++|||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998864
No 81
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=8.7e-30 Score=189.36 Aligned_cols=159 Identities=50% Similarity=0.816 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777888888887777788888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
|++++.+++.+..|+..+..+. ..+.|+++|+||+|+.. .....++...++...+++++++|+++|.|+.++++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999887765 46699999999999974 455677888888889999999999999999999999887
Q ss_pred H
Q 027503 172 Q 172 (222)
Q Consensus 172 ~ 172 (222)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 82
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=3.3e-30 Score=192.55 Aligned_cols=160 Identities=33% Similarity=0.499 Sum_probs=137.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhhhcCCcEEEEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-FRAITSSYYRGALGALLVY 92 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i~v~ 92 (222)
||+++|++|||||||+++++...+...+.++.... ....+.+++..+.+.+||+||++. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999888766666665433 356677888888999999999885 3455778899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC-CCHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN-LNVEDAFLQM 169 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~l 169 (222)
|++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++|+++|+++| .|++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887764 346999999999999777777888888999999999999999999 5999999999
Q ss_pred HHHHH
Q 027503 170 INQIH 174 (222)
Q Consensus 170 ~~~i~ 174 (222)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98664
No 83
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=6.4e-30 Score=202.33 Aligned_cols=160 Identities=27% Similarity=0.432 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+|+|++|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998877777775 556677888888899999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHH---------cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccccCCCH
Q 027503 93 DITRRATFENTKKWLRELREF---------CSSCMAIVLVGNKSDLTHSREVNEEEGKILAET-EGLYFMETSAMQNLNV 162 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 162 (222)
|+++.++|+.+..|+..+... ...++|++||+||+|+...+.+..++...++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 224689999999999976566777777777654 4688999999999999
Q ss_pred HHHHHHHHHHH
Q 027503 163 EDAFLQMINQI 173 (222)
Q Consensus 163 ~~~~~~l~~~i 173 (222)
+++|++|+..+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=1.2e-29 Score=190.14 Aligned_cols=162 Identities=33% Similarity=0.537 Sum_probs=142.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+++|.+|||||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++.+..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 3789999999999999999999999877777776543 456677888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCCHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l 169 (222)
||++++++++.+..|...+.... ..++|+++++||+|+.+.+....++...++...+ ++++++||++|.|+.++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988887643 4569999999999998767777777888888887 899999999999999999999
Q ss_pred HHHHH
Q 027503 170 INQIH 174 (222)
Q Consensus 170 ~~~i~ 174 (222)
+..+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98664
No 85
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.2e-29 Score=187.12 Aligned_cols=158 Identities=54% Similarity=0.894 Sum_probs=144.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++|.+..+...+.++.+.+.....+...+....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
|+++++++..+..|+..+........|+++++||+|+........++...++...+++++++|++++.|+.++|++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999998887756699999999999975566778888889988899999999999999999999886
No 86
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=6.8e-30 Score=189.68 Aligned_cols=153 Identities=21% Similarity=0.382 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|+.|||||||++++..+.+...+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999998887665443 3333 46788888888999999999874 35678899999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEccccCCCHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLT--HSREVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
|++++.+|+.+..|+..+..... ..+|+++|+||.|+. ..+.+..++++.+++.. ++.|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999877653 558999999999985 35678888888898876 589999999999999999999
Q ss_pred HHHH
Q 027503 169 MINQ 172 (222)
Q Consensus 169 l~~~ 172 (222)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8864
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.1e-29 Score=198.40 Aligned_cols=165 Identities=30% Similarity=0.365 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc-CCcEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR-GALGALL 90 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~i~ 90 (222)
+||+++|++|||||||+++|.++.+. ..+.++.+.+.....+.+++....+.+||+||++ ..+...++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999888876 5555666556777788888888999999999988 333445666 9999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++|+++||++|.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999887764 3569999999999998777777888888888889999999999999999999999
Q ss_pred HHHHHHhhhh
Q 027503 170 INQIHQTTIQ 179 (222)
Q Consensus 170 ~~~i~~~~~~ 179 (222)
++.+......
T Consensus 159 ~~~~~~~~~~ 168 (221)
T cd04148 159 VRQIRLRRDS 168 (221)
T ss_pred HHHHHhhhcc
Confidence 9988654433
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=4.5e-30 Score=192.76 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=139.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
..+||+++|.+|||||||+++|.+..+. ..+.+|.+.++....+.+++..+.+.+||++|++.+..++..++.++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4689999999999999999999999988 778888888887777888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 168 (222)
+|||++++.+++.+..|+..+.. ..++|+++|+||+|+.+...........++...++ .++++||++|.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 99999999999998888876532 23589999999999965444434455677777776 4799999999999999999
Q ss_pred HHHHHH
Q 027503 169 MINQIH 174 (222)
Q Consensus 169 l~~~i~ 174 (222)
+++.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998775
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.2e-29 Score=191.07 Aligned_cols=157 Identities=30% Similarity=0.516 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988887776665 4555567788888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503 93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEGL-YFMETSAMQ 158 (222)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 158 (222)
|++++.+|+.+. .|+..+.... .++|+++|+||+|+.. .+.+..+++..++...+. +|+++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999885 6888777543 3489999999999863 346777889999999887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMIN 171 (222)
Q Consensus 159 ~~gi~~~~~~l~~ 171 (222)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988764
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.2e-29 Score=190.98 Aligned_cols=159 Identities=32% Similarity=0.531 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+|||||++.+..++..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998777767664 333446778888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503 93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETSAMQ 158 (222)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 158 (222)
|++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+. ..+..+++..++...+. +|+++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 588877665 456999999999998643 25667788888888885 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQI 173 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i 173 (222)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999876
No 91
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=6.3e-32 Score=186.59 Aligned_cols=170 Identities=42% Similarity=0.744 Sum_probs=155.4
Q ss_pred EEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeC
Q 027503 16 VMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDI 94 (222)
Q Consensus 16 ~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (222)
+++|++++|||.|+-++..+.|. .+..+++++++..+.++.++..+++++|||+|+++|++.+..|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999998877765 44588899999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 95 TRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 95 ~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
.+..||++.+.|+.++.++..+.+.+.+++||+|+.+++.+..++.+.++..+++||+++||++|.+++-.|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999998887
Q ss_pred Hhhhhhhhhhc
Q 027503 175 QTTIQKSLCAK 185 (222)
Q Consensus 175 ~~~~~~~~~~~ 185 (222)
.....-.+.++
T Consensus 161 k~~~~~~~~~~ 171 (192)
T KOG0083|consen 161 KLKMGAPPEGE 171 (192)
T ss_pred HhccCCCCCCc
Confidence 66554444433
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=7.6e-29 Score=184.48 Aligned_cols=162 Identities=36% Similarity=0.540 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++|....+...+.++.+. ........++..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999998887776666643 34456677888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
|++++.++..+..|+..+.... ..++|+++|+||+|+.............+...++++++++||++|.|+.++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887764 356999999999999765556677778888888899999999999999999999998
Q ss_pred HHHH
Q 027503 172 QIHQ 175 (222)
Q Consensus 172 ~i~~ 175 (222)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7753
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=8.4e-29 Score=183.43 Aligned_cols=158 Identities=39% Similarity=0.593 Sum_probs=140.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
||+|+|++|||||||+++|++..+.....++.. +.....+..++..+.+.+||+||.+.+..++..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777666665 5566677777778899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 94 ITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
+++++++..+..|+..+..... .+.|+++|+||+|+........+.+..++...+.+++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999998888877654 569999999999998767777888888988888999999999999999999999875
No 94
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.5e-28 Score=187.48 Aligned_cols=164 Identities=33% Similarity=0.558 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
.||+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998887766666654333 346677788888999999999988877777889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCC----------CCCCCHHHHHHHHHHcCC-eEEEEccccCC
Q 027503 93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH----------SREVNEEEGKILAETEGL-YFMETSAMQNL 160 (222)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 160 (222)
|+++.++++.+. .|+..+...... +|+++|+||+|+.+ .+.+..+++..+++..+. +|+++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~-~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPN-VPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCC-CCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 588888766544 99999999999854 234556778888888885 89999999999
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 027503 161 NVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 161 gi~~~~~~l~~~i~~~~~ 178 (222)
|++++|+++.+.+...+.
T Consensus 160 ~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 160 GVDDVFEAATRAALLVRK 177 (187)
T ss_pred CHHHHHHHHHHHHhcccC
Confidence 999999999988765443
No 95
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.2e-28 Score=187.36 Aligned_cols=168 Identities=23% Similarity=0.342 Sum_probs=132.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
.+||+++|++|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998887644 577666665555544 3456889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------cCCeEEEEccccCCCHH
Q 027503 91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET------EGLYFMETSAMQNLNVE 163 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~ 163 (222)
|+|++++.++..+..|+..+.... ..++|++||+||+|+.+. ...++...+... .+++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999999988888887765543 356899999999998642 333434433321 23568999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 027503 164 DAFLQMINQIHQTTIQKSL 182 (222)
Q Consensus 164 ~~~~~l~~~i~~~~~~~~~ 182 (222)
++|++|++.+.+.+....+
T Consensus 160 ~l~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 160 EGLEKLYEMILKRRKMLRQ 178 (183)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 9999999988765544433
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=4e-28 Score=182.84 Aligned_cols=159 Identities=34% Similarity=0.557 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
.||+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999998877777775444 346677888889999999999999988888999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503 93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETSAMQ 158 (222)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 158 (222)
|++++++|+.+. .|+..+..... +.|+++|+||+|+.+. ..+.....+.++...+. +++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 58777766543 5899999999998642 22445667777777764 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQI 173 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i 173 (222)
|.|+.++|+++++.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 97
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=186.72 Aligned_cols=164 Identities=40% Similarity=0.594 Sum_probs=152.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..+||+++|.+|+|||+|..+|.+..|...+.|+.. +.+.+.+.+++..+.+.|+||+|++++..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999986 7777888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
||+++++.||+.+..++..+.+.. ...+|+++||||+|+.+.+.++.+++..++..++++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999998885544 4558999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027503 170 INQIHQ 175 (222)
Q Consensus 170 ~~~i~~ 175 (222)
++.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 988776
No 98
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=6.8e-28 Score=182.51 Aligned_cols=163 Identities=39% Similarity=0.561 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
.||+|+|.+|+|||||+++|.+..+...+.++..... ...+..++..+.+.+||+||++.+..++..++..+|+++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888766666664433 456677777788999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
|+++..+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+.+++++||+++.|+.++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999998887776653 456899999999999766666666777788888899999999999999999999998
Q ss_pred HHHHh
Q 027503 172 QIHQT 176 (222)
Q Consensus 172 ~i~~~ 176 (222)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 87644
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=3.4e-28 Score=187.04 Aligned_cols=161 Identities=29% Similarity=0.425 Sum_probs=135.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
||+++|++|||||||+++|++..+...+.++.. +.....+.+++..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666653 4555677888888899999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEccccCCCHHHHHHHHH
Q 027503 94 ITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTH-SREVNEEEGKILAE-TEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
++++.+++.+..|+..+..... .++|++||+||+|+.. ...+..+....... ..+++++++||++|.|+.++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888877653 5699999999999865 34454444444433 4567899999999999999999999
Q ss_pred HHHHH
Q 027503 171 NQIHQ 175 (222)
Q Consensus 171 ~~i~~ 175 (222)
+.+..
T Consensus 160 ~~~~~ 164 (198)
T cd04147 160 RQANL 164 (198)
T ss_pred HHhhc
Confidence 87763
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=4.8e-29 Score=188.21 Aligned_cols=166 Identities=22% Similarity=0.356 Sum_probs=126.4
Q ss_pred CCCCCCCC-CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027503 1 MGDSYDEE-CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITS 79 (222)
Q Consensus 1 ~~~~~~~~-~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 79 (222)
||...... .+..+||+++|++|||||||+++|..+.+. .+.||.+.+.. .+... .+.+.+||+||++.+..++.
T Consensus 1 ~~~~~~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~ 75 (175)
T smart00177 1 MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWR 75 (175)
T ss_pred CchhhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHH
Confidence 56654432 245799999999999999999999877764 45677766554 23333 37899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEE
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFME 153 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~ 153 (222)
.+++++|++|+|||++++.+++.+..|+..+... ...++|++||+||+|+.+.. +.++..... ....+.+++
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~ 153 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQP 153 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEE
Confidence 9999999999999999999999988887766432 22458999999999986432 223322221 122346788
Q ss_pred EccccCCCHHHHHHHHHHHH
Q 027503 154 TSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l~~~i 173 (222)
+||++|.|+.++|++|.+.+
T Consensus 154 ~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 154 TCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998764
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=2.7e-28 Score=182.95 Aligned_cols=154 Identities=20% Similarity=0.359 Sum_probs=122.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..+||+++|++|||||||+++|....+. .+.|+.+.+.. .+.. ..+.+.+|||||++.+..++..++.++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999887764 35677766554 2333 34789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEccccCCCHHH
Q 027503 91 VYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET-----EGLYFMETSAMQNLNVED 164 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 164 (222)
|||++++.++..+..|+..+.. ....++|++||+||+|+.+ .+..+++..+... ..++++++||++|.|+.+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 9999999999988777766543 2234589999999999864 2345555555422 235789999999999999
Q ss_pred HHHHHHH
Q 027503 165 AFLQMIN 171 (222)
Q Consensus 165 ~~~~l~~ 171 (222)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=6.5e-29 Score=185.56 Aligned_cols=153 Identities=22% Similarity=0.317 Sum_probs=125.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
.|+++|++|||||||+++|.+..+...+.|+.+.+. ..+++..+.+.+||+||++.+..++..+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999888777778876543 2333445789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH----HHHHHHHHHcCCeEEEEcccc------CCCHH
Q 027503 94 ITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE----EEGKILAETEGLYFMETSAMQ------NLNVE 163 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~gi~ 163 (222)
.+++.++..+..|+..+.... .++|+++|+||+|+...+.+.. ..+..++...+++++++||++ ++|+.
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999888887775433 4699999999999976543322 123455666778899999888 99999
Q ss_pred HHHHHHHH
Q 027503 164 DAFLQMIN 171 (222)
Q Consensus 164 ~~~~~l~~ 171 (222)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998864
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=9.4e-28 Score=182.05 Aligned_cols=159 Identities=21% Similarity=0.333 Sum_probs=123.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+++|.++||||||+++|....+. .+.|+.+.+.. .+..+ .+.+.+||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999887775 45677766543 33443 478999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-----GLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~ 163 (222)
+|||+++++++..+..|+..+... ...++|++||+||+|+.+.. ..++........ .+.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998887776665322 22458999999999986532 333333322211 2356789999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 164 DAFLQMINQIHQ 175 (222)
Q Consensus 164 ~~~~~l~~~i~~ 175 (222)
++|++|++.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999888764
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.8e-27 Score=178.44 Aligned_cols=157 Identities=34% Similarity=0.599 Sum_probs=132.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++|.+..+...+.++.. +.........+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998666666654 444556677788889999999999988888888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHcCC-eEEEEccccC
Q 027503 93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR-----------EVNEEEGKILAETEGL-YFMETSAMQN 159 (222)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 159 (222)
|++++.++.... .|+..+..... +.|+++|+||+|+.+.. .+..+++..++...+. +++++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999988764 47777766554 59999999999987644 2356777888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 027503 160 LNVEDAFLQMIN 171 (222)
Q Consensus 160 ~gi~~~~~~l~~ 171 (222)
.|+.++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999998875
No 105
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-29 Score=183.92 Aligned_cols=176 Identities=34% Similarity=0.549 Sum_probs=164.8
Q ss_pred CCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhh
Q 027503 3 DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYY 82 (222)
Q Consensus 3 ~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 82 (222)
.|-+++++..+|++|+|..++||||++++++.+-|...+..++++++-...+.+.+..+.+.+||++|+++|..++.+|+
T Consensus 11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy 90 (246)
T KOG4252|consen 11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY 90 (246)
T ss_pred CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence 35688899999999999999999999999999999999999999999888888877778889999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
+++.+.++||+-+|..||+.+..|+..+...... +|.++|-||+|+.+...+...+++.+++..++.++-+|++...++
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~-IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKETER-IPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHHHHHhcc-CCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 9999999999999999999999999998776655 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 027503 163 EDAFLQMINQIHQTTIQ 179 (222)
Q Consensus 163 ~~~~~~l~~~i~~~~~~ 179 (222)
..+|.+|++++.+...+
T Consensus 170 ~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999877655
No 106
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.5e-27 Score=181.96 Aligned_cols=148 Identities=21% Similarity=0.371 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-----CeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-----DKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+||+++|+.|||||||+++|.+..+...+.+|.+.++..+.+.+. +..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888898887777776663 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHc-------------------CCCCeEEEEEeCCCCCCCCCCCHHH----HHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFC-------------------SSCMAIVLVGNKSDLTHSREVNEEE----GKILA 144 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~ 144 (222)
+|+|||++++.+|+.+..|+..+.... ..++|++|||||+|+.+++.+..+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999986532 2468999999999997765555443 34667
Q ss_pred HHcCCeEEEEccccCC
Q 027503 145 ETEGLYFMETSAMQNL 160 (222)
Q Consensus 145 ~~~~~~~~~~Sa~~~~ 160 (222)
.+.+++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899999998888544
No 107
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=1.2e-27 Score=179.50 Aligned_cols=156 Identities=22% Similarity=0.355 Sum_probs=125.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
||+++|.+|||||||+++|.+..+.. +.+|.+.+.. .+... .+.+.+||+||++.+..++..++..+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987643 5666655553 33333 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC------CeEEEEccccCCCHHHHH
Q 027503 94 ITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG------LYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~ 166 (222)
++++.++..+..|+..+.... ..+.|++||+||+|+.+ .++.++...+....+ +.++++||++|.|+.++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999988888775432 34589999999999864 355666666554222 368899999999999999
Q ss_pred HHHHHHHHHh
Q 027503 167 LQMINQIHQT 176 (222)
Q Consensus 167 ~~l~~~i~~~ 176 (222)
++|.+.+.+.
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998876653
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=6.5e-28 Score=179.28 Aligned_cols=153 Identities=22% Similarity=0.371 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|.+|||||||++++..+.+. .+.|+.+.+.. .+... .+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999887775 45677766543 23333 478999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH----HcCCeEEEEccccCCCHHHHHH
Q 027503 93 DITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAE----TEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
|++++.++..+..|+..+... .....|++|++||+|+.+... ..+....+.. ..++.++++||++|.|++++|+
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 999999999988877665432 224589999999999864221 1222233321 2235678999999999999999
Q ss_pred HHHH
Q 027503 168 QMIN 171 (222)
Q Consensus 168 ~l~~ 171 (222)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04150 155 WLSN 158 (159)
T ss_pred HHhc
Confidence 9864
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=6.1e-27 Score=182.35 Aligned_cols=166 Identities=32% Similarity=0.568 Sum_probs=144.5
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
......+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 44556799999999999999999999888888888899998888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
++++|||+++..++..+..|+..+..... .+|+++++||+|+.+ .....+ ...++...++.++++|+++|.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998876654 489999999999864 333333 345677788999999999999999999
Q ss_pred HHHHHHHHH
Q 027503 167 LQMINQIHQ 175 (222)
Q Consensus 167 ~~l~~~i~~ 175 (222)
.++++.+..
T Consensus 161 ~~ia~~l~~ 169 (215)
T PTZ00132 161 LWLARRLTN 169 (215)
T ss_pred HHHHHHHhh
Confidence 999998764
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=6.9e-28 Score=182.96 Aligned_cols=159 Identities=20% Similarity=0.345 Sum_probs=122.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..+||+++|++|||||||++++..+.+.. +.||.+.+.. .+... .+.+.+||+||++.+..++..+++++|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998877754 5577765543 34443 3789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCCHHH
Q 027503 91 VYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 164 (222)
|+|++++.++..+..++..+... ...++|++||+||.|+.+. ...++..... ....+.++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999999887776665322 2245899999999998642 2223222211 12234677999999999999
Q ss_pred HHHHHHHHHHHh
Q 027503 165 AFLQMINQIHQT 176 (222)
Q Consensus 165 ~~~~l~~~i~~~ 176 (222)
+|++|.+.+.+.
T Consensus 169 ~~~~l~~~i~~~ 180 (182)
T PTZ00133 169 GLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999877653
No 111
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=2.8e-28 Score=182.58 Aligned_cols=167 Identities=31% Similarity=0.535 Sum_probs=150.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
...+|++|+|+.++|||+|+-.+..+.|+..+.||+. +-+...+.++ +..+.+.+|||+|+++|..++...++.+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 4678999999999999999999999999999999996 6666778884 9999999999999999999998899999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEE
Q 027503 89 LLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFMET 154 (222)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 154 (222)
+++|++++++||+++ .+|+.++.++... .|+++||+|.||.+. ..+..+.+..++++.| ..|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~-vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPN-VPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCC-CCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999997 5699999998855 999999999999742 3677888899999999 579999
Q ss_pred ccccCCCHHHHHHHHHHHHHHhhh
Q 027503 155 SAMQNLNVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 155 Sa~~~~gi~~~~~~l~~~i~~~~~ 178 (222)
||++..|++++|+..+..+.....
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999998886554
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2.7e-27 Score=178.24 Aligned_cols=156 Identities=21% Similarity=0.353 Sum_probs=123.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
.+..++|+++|++|||||||+++|.+..+ ....++.+.. ...+.+++ +.+.+||+||++.+..++..++..+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 35678999999999999999999998755 3445665533 34445553 6789999999999988999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCH
Q 027503 89 LLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNV 162 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 162 (222)
++|||++++.++.....|+..+... ...++|++||+||+|+.+.. ..++...+.. ..+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 9999999999999888887776432 23569999999999986532 3444444432 24578999999999999
Q ss_pred HHHHHHHHH
Q 027503 163 EDAFLQMIN 171 (222)
Q Consensus 163 ~~~~~~l~~ 171 (222)
+++|+++++
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=5.6e-27 Score=175.36 Aligned_cols=160 Identities=31% Similarity=0.386 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+++|++|||||||+++|.++.+...+ ++.... ......+.+..+.+.+|||||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVLPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccC-CCcccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999998886553 322222 2344455667789999999999888777788889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHc-C-CeEEEEccccCCCHHHHHH
Q 027503 93 DITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGKILAETE-G-LYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 93 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~~~~~ 167 (222)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.+..... .+....++... + .+++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 58777776554 69999999999997644321 22233333333 2 3799999999999999999
Q ss_pred HHHHHHHH
Q 027503 168 QMINQIHQ 175 (222)
Q Consensus 168 ~l~~~i~~ 175 (222)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 98887653
No 114
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=5.6e-26 Score=171.31 Aligned_cols=141 Identities=38% Similarity=0.634 Sum_probs=127.3
Q ss_pred CcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc
Q 027503 35 DEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC 114 (222)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~ 114 (222)
+.|.+.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35677788999999988888999999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503 115 SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 115 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
...+|++||+||+|+.+.+.+..+++..++...++.|+++||++|.|+.++|++|++.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5568999999999998767778888889998889999999999999999999999988754
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=9.3e-27 Score=173.03 Aligned_cols=152 Identities=17% Similarity=0.285 Sum_probs=117.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+|+++|++|||||||+++|.+..+ ...+.++.+.... .+.. ..+.+.+|||||++.+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4455666664432 2233 3468899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCHHH
Q 027503 93 DITRRATFENTKKWLRELREFC---SSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 164 (222)
|++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..++...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888887765432 3469999999999986532 2222222111 1234689999999999999
Q ss_pred HHHHHHH
Q 027503 165 AFLQMIN 171 (222)
Q Consensus 165 ~~~~l~~ 171 (222)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1.5e-26 Score=173.34 Aligned_cols=153 Identities=22% Similarity=0.312 Sum_probs=119.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
+|+++|++|||||||+++|.+. +...+.++.+... ..+...+ +.+.+||+||++.+..++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999876 5666677776543 3444544 688999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHH----HHHHHHHc--CCeEEEEccccC------C
Q 027503 94 ITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEE----GKILAETE--GLYFMETSAMQN------L 160 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~~~~--~~~~~~~Sa~~~------~ 160 (222)
++++.++..+..|+..+.... ..++|++||+||+|+.+........ ...++... .++++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999998988876543 2468999999999997543211111 11222222 356888999998 8
Q ss_pred CHHHHHHHHHH
Q 027503 161 NVEDAFLQMIN 171 (222)
Q Consensus 161 gi~~~~~~l~~ 171 (222)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.4e-26 Score=171.90 Aligned_cols=152 Identities=24% Similarity=0.426 Sum_probs=117.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
+|+++|++|||||||+++|.+..+.. ..++.+.+. ..+... ..+.+.+||+||++.+..++..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988754 356665443 333333 34689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH------HHHcCCeEEEEccccCCCHHHHH
Q 027503 94 ITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKIL------AETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..++.... ....+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 99999988888877776443 22469999999999986422 22222211 12234579999999999999999
Q ss_pred HHHHH
Q 027503 167 LQMIN 171 (222)
Q Consensus 167 ~~l~~ 171 (222)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98864
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=2.5e-26 Score=173.19 Aligned_cols=154 Identities=23% Similarity=0.352 Sum_probs=120.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..++|+++|++|+|||||+++|..+.+.. ..++.+.+.. .+..+ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999887764 4566655543 34444 3689999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHH-HHHHH----HHcCCeEEEEccccCCCHHH
Q 027503 91 VYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEE-GKILA----ETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~gi~~ 164 (222)
|+|+++++++.....|+..+... ...++|+++++||+|+.+. .+.++ ...+. ...+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999999888877766665433 2345899999999998652 23333 23222 23456799999999999999
Q ss_pred HHHHHHH
Q 027503 165 AFLQMIN 171 (222)
Q Consensus 165 ~~~~l~~ 171 (222)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999865
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=1.8e-26 Score=171.22 Aligned_cols=152 Identities=23% Similarity=0.370 Sum_probs=113.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
||+++|++++|||||+++|....+.. ..++.+.+.. .+... ...+.+|||||++.+..++..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998777643 3455554443 33333 4689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH----HHcCCeEEEEccccCCCHHHHHHH
Q 027503 94 ITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA----ETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
++++.++.....|+..+ ......++|+++|+||+|+.+... ..+....+. ...+.+++++||++|.|++++|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS-EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 99988887766655443 333334589999999999864321 112222221 112357999999999999999999
Q ss_pred HHH
Q 027503 169 MIN 171 (222)
Q Consensus 169 l~~ 171 (222)
|++
T Consensus 155 l~~ 157 (158)
T cd04151 155 LVN 157 (158)
T ss_pred Hhc
Confidence 875
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=1.1e-25 Score=171.84 Aligned_cols=156 Identities=22% Similarity=0.329 Sum_probs=123.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
.+.++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+||+||+..+..++..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 35789999999999999999999987764 445555443 34455554 67899999999998888999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------cCCeEE
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET----------------EGLYFM 152 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~ 152 (222)
+|+|+++..++.....|+..+.... ..+.|++|++||+|+.+ .+..+..+.+... ..++++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999989888877777765543 34589999999999864 4455555555432 224689
Q ss_pred EEccccCCCHHHHHHHHHHH
Q 027503 153 ETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 153 ~~Sa~~~~gi~~~~~~l~~~ 172 (222)
++||++|.|+.++|++|.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999764
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=5.6e-26 Score=168.36 Aligned_cols=151 Identities=21% Similarity=0.365 Sum_probs=118.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
||+++|.+|||||||++++.+..+ ....++.+... ..+.+.+ ..+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998874 34455555444 3344443 689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCHHHHHH
Q 027503 94 ITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++...... ...++++++||++|.|+.++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888877665532 4568999999999987533 2333333322 2346899999999999999999
Q ss_pred HHHH
Q 027503 168 QMIN 171 (222)
Q Consensus 168 ~l~~ 171 (222)
+|+.
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 122
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=1.6e-25 Score=180.29 Aligned_cols=144 Identities=24% Similarity=0.436 Sum_probs=124.3
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-------------eEEEEEEEeCCChh
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-------------KLIKAQIWDTAGQE 72 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~ 72 (222)
..+....+||+|+|+.|||||||+++|.+..+...+.+|++.++....+.+++ ..+.+.||||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 34556789999999999999999999999998888889998888777776642 46789999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC------------CCCeEEEEEeCCCCCCCC---C---
Q 027503 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS------------SCMAIVLVGNKSDLTHSR---E--- 134 (222)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~ivv~nK~Dl~~~~---~--- 134 (222)
.|..++..+++++|++|+|||+++..+|+.+..|+..+..... ..+|++||+||+||...+ .
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999999999977631 248999999999997542 2
Q ss_pred CCHHHHHHHHHHcCC
Q 027503 135 VNEEEGKILAETEGL 149 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~ 149 (222)
+..++++.|+..+++
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 357899999999873
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=8.4e-26 Score=168.85 Aligned_cols=152 Identities=24% Similarity=0.411 Sum_probs=116.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEF------RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+|+|+|++|||||||+++|.+... .....++.+.+. ..+.+++ ..+.+||+||++.+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 122234444443 3444543 688999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEccccC
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET-------EGLYFMETSAMQN 159 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 159 (222)
+++|+|++++.++.....|+..+.... ..++|+++|+||+|+.+. ....+...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888887777765432 356999999999998653 333444443322 3468999999999
Q ss_pred CCHHHHHHHHHH
Q 027503 160 LNVEDAFLQMIN 171 (222)
Q Consensus 160 ~gi~~~~~~l~~ 171 (222)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999875
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.93 E-value=9e-25 Score=164.78 Aligned_cols=158 Identities=29% Similarity=0.425 Sum_probs=125.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
+...++|+++|.+|||||||+++|....+.. ..||.+.+. ..+.+.+ ..+.+||.+|+..++.+|..++.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 4788999999999999999999998766433 455555444 4455555 6789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH------HcCCeEEEEccccCCC
Q 027503 89 LLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAE------TEGLYFMETSAMQNLN 161 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g 161 (222)
|+|+|.++.+.+.+....+..+... ...++|++|++||.|+.+ ..+.++...... ...+.++.|||.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999998888887776665443 235699999999999864 334455443332 2345699999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 162 VEDAFLQMINQI 173 (222)
Q Consensus 162 i~~~~~~l~~~i 173 (222)
+.+.|+||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=9.8e-25 Score=165.95 Aligned_cols=156 Identities=20% Similarity=0.305 Sum_probs=120.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...++|+++|.+|||||||+++|.+..+.. ..++.+... ..+..++ +.+.+||+||++.+..++..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999877643 344444332 3344444 67899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcc
Q 027503 90 LVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAET------------EGLYFMETSA 156 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 156 (222)
+|+|++++.++.....++..+... ...++|+++|+||+|+.. .++.++....... ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999988887777665432 224589999999999854 3444444433211 2345999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 027503 157 MQNLNVEDAFLQMINQ 172 (222)
Q Consensus 157 ~~~~gi~~~~~~l~~~ 172 (222)
++|.|++++++||..+
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999765
No 126
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=1.4e-24 Score=155.19 Aligned_cols=164 Identities=20% Similarity=0.325 Sum_probs=130.3
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
+.+++.++|+++|..||||||++++|.+... ....|+.+.++. .+.+.+ +.+.+||.+|+...+..|..|+...|
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Ik--tl~~~~--~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIK--TLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeE--EEEecc--eEEEEEEcCCcchhHHHHHHhhhccC
Confidence 3467899999999999999999999998773 334466655554 333333 78999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCCCCCCCCCHHH------HHHHHHHcCCeEEEEccccC
Q 027503 87 GALLVYDITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTHSREVNEEE------GKILAETEGLYFMETSAMQN 159 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~~ 159 (222)
++|+|+|.+++..+++....++.+ ....-.+.|++|++||.|+.. .++.+. ...++....++++.||+.+|
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTG 163 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence 999999999998888876655554 333345689999999999873 222222 23444667789999999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 027503 160 LNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 160 ~gi~~~~~~l~~~i~~~~ 177 (222)
+++.+.++|+++.+.++.
T Consensus 164 e~l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMSRL 181 (185)
T ss_pred ccHHHHHHHHHHHHHHHh
Confidence 999999999999998743
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=7.5e-25 Score=163.85 Aligned_cols=156 Identities=18% Similarity=0.231 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhHhhhc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR---------AITSSYYR 83 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~ 83 (222)
.+|+++|++|+|||||+++|.+..+.....+..+.+.....+... .+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999987653333333333333333333 3689999999974210 11111123
Q ss_pred CCcEEEEEEeCCChhhH--HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503 84 GALGALLVYDITRRATF--ENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN 161 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (222)
.+|++++|+|+++..++ +....|+..+.... .+.|+++|+||+|+.+...+.. ...+....+.+++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 46899999999987643 55566777776543 3589999999999975433322 4455555678899999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 162 VEDAFLQMINQI 173 (222)
Q Consensus 162 i~~~~~~l~~~i 173 (222)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=1.2e-24 Score=160.40 Aligned_cols=151 Identities=25% Similarity=0.427 Sum_probs=119.9
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeC
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDI 94 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (222)
|+++|++|||||||+++|.+..+...+.++.+.+.. .+..++ +.+.+||+||++.+..++..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 799999999999999999999988888887776654 334443 6899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCCHHHHHHH
Q 027503 95 TRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 95 ~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
++..++.....|+..+... ...++|+++|+||+|+.+... ........ ....++++++|+++|.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9998888877777665432 234589999999999865332 12211111 123467999999999999999999
Q ss_pred HHH
Q 027503 169 MIN 171 (222)
Q Consensus 169 l~~ 171 (222)
+.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 129
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=8.7e-25 Score=168.82 Aligned_cols=157 Identities=20% Similarity=0.173 Sum_probs=117.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhH
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER---------FRAITS 79 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~ 79 (222)
+++.++|+|+|++|||||||++++.+..+.....+..+.+.....+.+++. ..+.+|||||... +... .
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~ 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-L 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-H
Confidence 456789999999999999999999998754444344444444455555443 2789999999732 2221 1
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN 159 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (222)
..+..+|++++|+|++++.++.....|...+......++|+++|+||+|+....... .+....+.+++++||+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence 236789999999999999888887777777766655568999999999986533211 344456678999999999
Q ss_pred CCHHHHHHHHHHH
Q 027503 160 LNVEDAFLQMINQ 172 (222)
Q Consensus 160 ~gi~~~~~~l~~~ 172 (222)
.|+.+++++|.+.
T Consensus 191 ~gi~~l~~~L~~~ 203 (204)
T cd01878 191 EGLDELLEAIEEL 203 (204)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998765
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.1e-24 Score=163.21 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=113.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----hhhhhhHhh---hcCCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----RFRAITSSY---YRGAL 86 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~---~~~~d 86 (222)
+|+|+|.+|||||||+++|.+........+..+.+.....+.+.+. ..+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976543222232333333333444432 478999999963 222233333 44699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccccCCCH
Q 027503 87 GALLVYDITRR-ATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAET-EGLYFMETSAMQNLNV 162 (222)
Q Consensus 87 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 162 (222)
++++|+|++++ .+++.+..|.+.+..... .++|+++|+||+|+.+.... .+....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 788888889888876642 35899999999999764443 3344445555 3788999999999999
Q ss_pred HHHHHHHHHH
Q 027503 163 EDAFLQMINQ 172 (222)
Q Consensus 163 ~~~~~~l~~~ 172 (222)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=5.1e-24 Score=156.59 Aligned_cols=157 Identities=33% Similarity=0.465 Sum_probs=129.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+++|.+|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+..++..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887777777888887777778887778899999999999999999999999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 92 YDITRR-ATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
+|.... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||.+|.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999877 6666554 66666666554368999999999997643 34444555555566789999999999999999876
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=2.2e-24 Score=163.01 Aligned_cols=154 Identities=23% Similarity=0.280 Sum_probs=112.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc-------CCCCCCCC------cceeeEEEEEE--E---CCeEEEEEEEeCCChhhhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE-------FRLDSKPT------IGVEFAYRNIR--V---GDKLIKAQIWDTAGQERFR 75 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~--~---~~~~~~~~l~Dt~G~~~~~ 75 (222)
+|+++|++++|||||+++|++.. +...+.++ .+.+....... + ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 11111121 22333332222 2 5567889999999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---eEE
Q 027503 76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL---YFM 152 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 152 (222)
..+..++..+|++|+|+|++++.++.....|.... ..++|+++|+||+|+.+.. ..+....++...++ +++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999877666665554322 2358999999999986422 22333455666665 489
Q ss_pred EEccccCCCHHHHHHHHHHHH
Q 027503 153 ETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 153 ~~Sa~~~~gi~~~~~~l~~~i 173 (222)
++||++|.|++++|+++.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998754
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=6.8e-24 Score=174.25 Aligned_cols=163 Identities=20% Similarity=0.179 Sum_probs=122.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhhcC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYYRG 84 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 84 (222)
...|+|+|.|+||||||+++|.+........+..+.......+.+.+ ...|.+||+||..+ ....+...+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 35689999999999999999998654333344455555555555532 23689999999642 22233345668
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
++++|+|+|+++.++++.+..|...+..+.. .++|++||+||+|+.+......+....+....+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988888898899998877653 45899999999999764444334445555566789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027503 163 EDAFLQMINQIHQ 175 (222)
Q Consensus 163 ~~~~~~l~~~i~~ 175 (222)
++++++|.+.+.+
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 134
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=6.6e-23 Score=159.86 Aligned_cols=173 Identities=40% Similarity=0.551 Sum_probs=140.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..+||+++|+.|||||||+++|.++.+...+.++.+..+........+..+.+.+|||+|+++++.++..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34999999999999999999999999999888888777776666666657899999999999999999999999999999
Q ss_pred EEeCCCh-hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHc---CCeEEEE
Q 027503 91 VYDITRR-ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETE---GLYFMET 154 (222)
Q Consensus 91 v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 154 (222)
++|..+. .+++....|...+........|+++|+||+|+.... ....+......... ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999994 455566779989888876669999999999998653 22223333333222 2348999
Q ss_pred ccc--cCCCHHHHHHHHHHHHHHhhhhhhhh
Q 027503 155 SAM--QNLNVEDAFLQMINQIHQTTIQKSLC 183 (222)
Q Consensus 155 Sa~--~~~gi~~~~~~l~~~i~~~~~~~~~~ 183 (222)
|++ ++.++.++|..+...+.+........
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 194 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIEKLVLK 194 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhhhhhhh
Confidence 999 99999999999999998665554443
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=2.5e-23 Score=156.38 Aligned_cols=153 Identities=21% Similarity=0.340 Sum_probs=116.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
....++|+|+|++|||||||++++.+..+. ...++.+.+. ..+...+ ..+.+||+||...+...+..+++.+|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345899999999999999999999987654 3345555433 3444554 5789999999998888889999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEccccC
Q 027503 89 LLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--------LYFMETSAMQN 159 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~ 159 (222)
++|+|+.+..++.....|+..+... ...++|+++++||+|+.+... .+. +....+ .+++++||++|
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE---IAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH---HHHHcCCcccCCCeEEEEEeECCCC
Confidence 9999999988888877666555332 334599999999999865322 122 222222 24789999999
Q ss_pred CCHHHHHHHHHH
Q 027503 160 LNVEDAFLQMIN 171 (222)
Q Consensus 160 ~gi~~~~~~l~~ 171 (222)
.|++++|+||++
T Consensus 161 ~gi~~~~~~l~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=1.4e-23 Score=156.04 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=105.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc---CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE---FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
.|+++|++|||||||+++|.+.. +.....++.+.+.....+.+.+ ...+.+|||||++.+......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999998643 3333334455555555555542 3578999999999887777778899999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHH---cCCeEEEEccccCCCH
Q 027503 91 VYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEGKILAET---EGLYFMETSAMQNLNV 162 (222)
Q Consensus 91 v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi 162 (222)
|+|+++ +++.+.+ ..+... . ..|+++|+||+|+.+.... ...+....... .+.+++++|+++|.|+
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 999987 3333322 222222 1 1489999999999753211 11222333333 4578999999999999
Q ss_pred HHHHHHHHH
Q 027503 163 EDAFLQMIN 171 (222)
Q Consensus 163 ~~~~~~l~~ 171 (222)
+++|+.+.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999988753
No 137
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=166.52 Aligned_cols=159 Identities=23% Similarity=0.307 Sum_probs=108.4
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC-----------hhh
Q 027503 5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG-----------QER 73 (222)
Q Consensus 5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~ 73 (222)
+.+.+...++|+++|.+|||||||+++|.+..+.....++. +.....+... .+.+||||| .+.
T Consensus 2 ~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~ 75 (201)
T PRK04213 2 FETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEK 75 (201)
T ss_pred CcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHH
Confidence 45566778999999999999999999999887655444544 3333333333 589999999 456
Q ss_pred hhhhhHhhhc----CCcEEEEEEeCCChhhHHHHHHHH---------HHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503 74 FRAITSSYYR----GALGALLVYDITRRATFENTKKWL---------RELREFCSSCMAIVLVGNKSDLTHSREVNEEEG 140 (222)
Q Consensus 74 ~~~~~~~~~~----~~d~~i~v~d~~~~~s~~~~~~~~---------~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (222)
++..+..++. .++++++|+|.++..... ..|. ..+......++|+++|+||+|+.+.. .+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~ 150 (201)
T PRK04213 76 IKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR---DEVL 150 (201)
T ss_pred HHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH---HHHH
Confidence 6666666654 457888888876532110 1110 01111122358999999999986533 3345
Q ss_pred HHHHHHcCC---------eEEEEccccCCCHHHHHHHHHHHHHH
Q 027503 141 KILAETEGL---------YFMETSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 141 ~~~~~~~~~---------~~~~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
..++...++ +++++||++| |++++|++|.+.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 151 DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 555555554 5899999999 999999999987654
No 138
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.8e-24 Score=155.68 Aligned_cols=159 Identities=21% Similarity=0.341 Sum_probs=130.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
....+|+++|-.++||||++.+|..+++... .||++.+.+...+. .+.|++||.+|++.++.+|..|+++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4688999999999999999999999887555 79998888765554 479999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAET-----EGLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 163 (222)
||+|.+|++.+..+...+..+..... ...|+++++||.|+.+. .+..+....... +...+..++|.+|+|+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 99999999999888776666554443 56899999999998753 333333333222 34578899999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 164 DAFLQMINQIHQ 175 (222)
Q Consensus 164 ~~~~~l~~~i~~ 175 (222)
+.++|+.+.+..
T Consensus 168 egl~wl~~~~~~ 179 (181)
T KOG0070|consen 168 EGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=9.4e-24 Score=153.79 Aligned_cols=134 Identities=23% Similarity=0.228 Sum_probs=100.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh-----hhhhhhHhhhcCCcEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-----RFRAITSSYYRGALGA 88 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~ 88 (222)
||+++|++|||||||+++|.+..+. +.++.+. .+.. .+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 2233222 2221 589999973 2333333 57899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~ 167 (222)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....+....++...+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988765 3343322 149999999999865 34455666777777776 799999999999999998
Q ss_pred HHH
Q 027503 168 QMI 170 (222)
Q Consensus 168 ~l~ 170 (222)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=9.7e-23 Score=148.35 Aligned_cols=153 Identities=48% Similarity=0.747 Sum_probs=123.0
Q ss_pred EEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCC
Q 027503 17 MIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT 95 (222)
Q Consensus 17 llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (222)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998886 44444555 6777777777777789999999999988888888999999999999999
Q ss_pred ChhhHHHHHHHH-HHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 96 RRATFENTKKWL-RELREFCSSCMAIVLVGNKSDLTHSREVNEEE-GKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 96 ~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
++.++..+..|. ..+......+.|+++|+||+|+.......... ...+......+++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888887773 33334445669999999999987644333322 4455566678999999999999999999875
No 141
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=6.1e-23 Score=153.32 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=110.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
.|+|+|.+|+|||||+++|....+.....++.+.+.....+... +....+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999888766554445444444444443 13467899999999998888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH-HHHHHHHH------HcCCeEEEEccccCCCHHHH
Q 027503 93 DITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE-EEGKILAE------TEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~ 165 (222)
|+++...... ...+..+.. .++|+++|+||+|+........ +....+.. ...++++++|+++|.|+.++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 9988532221 112222222 3489999999999864321000 11111111 12367999999999999999
Q ss_pred HHHHHHHHH
Q 027503 166 FLQMINQIH 174 (222)
Q Consensus 166 ~~~l~~~i~ 174 (222)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987654
No 142
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.2e-23 Score=153.92 Aligned_cols=148 Identities=20% Similarity=0.244 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh------hhhhhHhhh--cC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER------FRAITSSYY--RG 84 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~~~~--~~ 84 (222)
++|+++|.||||||||+|+|.+........|..+++.....+.+.+ ..+.++|+||... .+.+...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999987777788888888888888877 5789999999432 223444554 58
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
.|++++|+|+++.+.-. ....++.+ .++|+++++||+|........ .+...++...+++++.+||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998754222 22333333 349999999999987644433 346778888999999999999999999
Q ss_pred HHHHH
Q 027503 165 AFLQM 169 (222)
Q Consensus 165 ~~~~l 169 (222)
+++.+
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98764
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=8.8e-23 Score=150.88 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=112.3
Q ss_pred EEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhhhc--CCcEE
Q 027503 17 MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA------ITSSYYR--GALGA 88 (222)
Q Consensus 17 llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~ 88 (222)
|+|.+|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||.+.+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998865555556666666666677765 4789999999876543 3555664 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
++|+|++++.... .|...+.. .++|+++|+||+|+.+...+.. ....++...+++++++|+.+|.|+.+++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999999864432 34333333 3489999999999976544433 345677777899999999999999999999
Q ss_pred HHHHH
Q 027503 169 MINQI 173 (222)
Q Consensus 169 l~~~i 173 (222)
+.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 88763
No 144
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1.3e-22 Score=167.90 Aligned_cols=155 Identities=21% Similarity=0.136 Sum_probs=116.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh---------hhhhhhHh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE---------RFRAITSS 80 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~ 80 (222)
+..++|+++|.+|+|||||+|+|.+..+.....+..+.+.....+.+.+. ..+.+|||+|.. .+.. ...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHH
Confidence 34589999999999999999999998765555556666777777777432 478999999972 2322 223
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC
Q 027503 81 YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL 160 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (222)
.+..+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+..... .... .....+++++||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCC
Confidence 578999999999999998888777777767666555689999999999864221 1111 1223468999999999
Q ss_pred CHHHHHHHHHHH
Q 027503 161 NVEDAFLQMINQ 172 (222)
Q Consensus 161 gi~~~~~~l~~~ 172 (222)
|+++++++|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999988754
No 145
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=3.3e-22 Score=164.19 Aligned_cols=160 Identities=20% Similarity=0.173 Sum_probs=117.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----hhh---hHhhhcC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF----RAI---TSSYYRG 84 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~ 84 (222)
...|+|+|.++||||||+++|..........+..+.......+.+++ ...+.+||+||..+. ..+ +...+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 35699999999999999999998654333334444454555555544 247899999996421 123 3334557
Q ss_pred CcEEEEEEeCCCh---hhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503 85 ALGALLVYDITRR---ATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN 159 (222)
Q Consensus 85 ~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (222)
++++++|+|+++. .+++.+..|...+..+.. ...|++||+||+|+.+... ..+..+.++...+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999986 677888888887766542 4589999999999976432 234455666667789999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027503 160 LNVEDAFLQMINQI 173 (222)
Q Consensus 160 ~gi~~~~~~l~~~i 173 (222)
.|++++++++.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=1.4e-22 Score=155.30 Aligned_cols=149 Identities=21% Similarity=0.193 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhh--CcCCCCC------------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR--DEFRLDS------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAIT 78 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 78 (222)
-+|+++|.+++|||||+++|+. ..+.... ..+.+.+.......+.+....+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999997 4443322 1223344444444444455789999999999999999
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCCe
Q 027503 79 SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE-VNEEEGKILAE-------TEGLY 150 (222)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~ 150 (222)
..+++.+|++++|+|+++.. +.....|+..+.. .++|+++|+||+|+.+... ...++...+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2333334333332 3589999999999965321 11223333332 23678
Q ss_pred EEEEccccCCCHHHH
Q 027503 151 FMETSAMQNLNVEDA 165 (222)
Q Consensus 151 ~~~~Sa~~~~gi~~~ 165 (222)
++++||++|.|+.++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887554
No 147
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=1.4e-22 Score=152.50 Aligned_cols=155 Identities=24% Similarity=0.253 Sum_probs=109.0
Q ss_pred EEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhh---hHhhhcCCcEEE
Q 027503 17 MIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FRAI---TSSYYRGALGAL 89 (222)
Q Consensus 17 llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~---~~~~~~~~d~~i 89 (222)
|+|++|||||||+++|.+..+.....+..+.+.....+.+.+ ...+.+|||||... ...+ ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865222223333344334444541 25789999999642 1222 234577899999
Q ss_pred EEEeCCCh------hhHHHHHHHHHHHHHHcC-------CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503 90 LVYDITRR------ATFENTKKWLRELREFCS-------SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA 156 (222)
Q Consensus 90 ~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (222)
+|+|++++ .++.....|...+..... .+.|+++|+||+|+..................+.+++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 577777777777654432 35899999999999764443332223444445678999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 027503 157 MQNLNVEDAFLQMINQ 172 (222)
Q Consensus 157 ~~~~gi~~~~~~l~~~ 172 (222)
+++.|+.++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988764
No 148
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=1e-21 Score=144.73 Aligned_cols=146 Identities=24% Similarity=0.261 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhhhc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA--------ITSSYYR 83 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 83 (222)
++|+++|++|+|||||++++.+..... ...+..+.+.....+..++ ..+.+|||||...+.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876432 2234444444445555554 5689999999654322 2335677
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++||+++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998877766554433 334899999999999764432 344456789999999999999
Q ss_pred HHHHHHHHHH
Q 027503 164 DAFLQMINQI 173 (222)
Q Consensus 164 ~~~~~l~~~i 173 (222)
+++++|...+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 149
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=6.3e-22 Score=159.12 Aligned_cols=152 Identities=20% Similarity=0.103 Sum_probs=104.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhHhhhcC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--------AITSSYYRG 84 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~ 84 (222)
+|+|+|.+|||||||+|+|.+..+...+ .+..+.+........++ ..+.+|||||..... .....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999998765333 23333332222222333 468999999965321 123456789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHH
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVE 163 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 163 (222)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+... .......+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876654 334444433 3489999999999864222 12233344444444 79999999999999
Q ss_pred HHHHHHHHHH
Q 027503 164 DAFLQMINQI 173 (222)
Q Consensus 164 ~~~~~l~~~i 173 (222)
++++++.+.+
T Consensus 154 ~L~~~l~~~l 163 (270)
T TIGR00436 154 FLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHhC
Confidence 9999987765
No 150
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=2.2e-21 Score=137.27 Aligned_cols=169 Identities=22% Similarity=0.340 Sum_probs=137.9
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC--CCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhh-hhhhHhhhcC
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD--SKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERF-RAITSSYYRG 84 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~ 84 (222)
..+..||+++|..++|||+++.+|+-...... ..+|+. +++...+.. .+-.-.+.|+||.|.... ..+-.+|+.-
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 34678999999999999999999886654433 345553 334333333 333447899999996655 6788899999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
+|++++||+..+++||+.+.-+...|.... +..+|++|++||+|+.+.+.+..+.+..|+....+..+++++.+...+-
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 999999999999999998877666676655 3569999999999999889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 027503 164 DAFLQMINQIHQTTI 178 (222)
Q Consensus 164 ~~~~~l~~~i~~~~~ 178 (222)
+.|.++..++...+.
T Consensus 165 epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 165 EPFTYLASRLHQPQS 179 (198)
T ss_pred hHHHHHHHhccCCcc
Confidence 999999998875543
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=6.9e-22 Score=170.25 Aligned_cols=159 Identities=23% Similarity=0.241 Sum_probs=114.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ----------ERFRAIT 78 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 78 (222)
+..++|+|+|.+|||||||+|+|++..+. ....++.+.+.....+..++. .+.+|||||. +.+..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 35689999999999999999999988753 344566666666666777764 4679999995 2233332
Q ss_pred -HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC---CHHHHHHHHHHcCCeEEEE
Q 027503 79 -SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV---NEEEGKILAETEGLYFMET 154 (222)
Q Consensus 79 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~ 154 (222)
..+++.+|++++|+|++++.++.++. ++..+.. .++|++||+||+|+.+.... ..+....+.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 34678999999999999988877754 4444433 45899999999999752211 0111112222234789999
Q ss_pred ccccCCCHHHHHHHHHHHHH
Q 027503 155 SAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 155 Sa~~~~gi~~~~~~l~~~i~ 174 (222)
||++|.|++++|+.+.+.+.
T Consensus 363 SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALE 382 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=2e-21 Score=165.22 Aligned_cols=153 Identities=21% Similarity=0.222 Sum_probs=117.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA--------ITSSY 81 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~ 81 (222)
..++|+++|++|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.+|||||...+.. ....+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987542 33446666777777777877 4568999999754332 23467
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503 82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN 161 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (222)
++.+|++++|+|++++.+++.. |+..+.. .++|+++|+||+|+.+. ....++...+.+++.+|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 8899999999999998877664 6555432 34899999999998643 12344566778899999998 69
Q ss_pred HHHHHHHHHHHHHHhh
Q 027503 162 VEDAFLQMINQIHQTT 177 (222)
Q Consensus 162 i~~~~~~l~~~i~~~~ 177 (222)
+.++|+.+.+.+.+..
T Consensus 348 I~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 348 IKALVDLLTQKINAFY 363 (442)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887643
No 153
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=1.2e-21 Score=138.41 Aligned_cols=114 Identities=33% Similarity=0.531 Sum_probs=89.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCC--CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFR--LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
||+|+|++|||||||+++|.+..+. ....+..+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22334444555555667777777799999999998888888889999999999
Q ss_pred EeCCChhhHHHHHHH---HHHHHHHcCCCCeEEEEEeCCC
Q 027503 92 YDITRRATFENTKKW---LRELREFCSSCMAIVLVGNKSD 128 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~ivv~nK~D 128 (222)
||++++.+++.+..+ +..+...... +|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~-~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKN-IPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSC-SEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCC-CCEEEEEeccC
Confidence 999999999987554 4545444344 99999999998
No 154
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=3.3e-21 Score=163.05 Aligned_cols=158 Identities=22% Similarity=0.169 Sum_probs=116.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--hhh------hHhhhc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF--RAI------TSSYYR 83 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~------~~~~~~ 83 (222)
.++|+|+|.+|||||||+|+|.+..+.....+..+.+.....+.+.+.. .+.+|||+|.... ..+ +...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 3689999999999999999999887665555666677666667765532 6789999997431 122 223468
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccccCCCH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNV 162 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 162 (222)
.+|++++|+|++++.+++.+..|...+......++|+++|+||+|+..... .... ....+.+ ++.+||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence 999999999999998888876666666655555689999999999864211 1111 1123445 588999999999
Q ss_pred HHHHHHHHHHHHH
Q 027503 163 EDAFLQMINQIHQ 175 (222)
Q Consensus 163 ~~~~~~l~~~i~~ 175 (222)
+++++++.+.+..
T Consensus 351 deL~e~I~~~l~~ 363 (426)
T PRK11058 351 PLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988754
No 155
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=2.4e-21 Score=147.23 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=109.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCC----------------cceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPT----------------IGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI 77 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 77 (222)
+|+|+|.+|+|||||+++|.+.......... .+.......+... ...+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 4899999999999999999988765443221 1222222333333 367899999999988888
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHH---------
Q 027503 78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGKILAET--------- 146 (222)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~--------- 146 (222)
+..++..+|++++|+|+.++..... ..++..+.. .+.|+++|+||+|+....... .+........
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8999999999999999988754433 233333333 458999999999997532211 1222222222
Q ss_pred -----cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 147 -----EGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 147 -----~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
...+++++||++|.|+.++++++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 357899999999999999999998875
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=2.4e-21 Score=165.46 Aligned_cols=148 Identities=22% Similarity=0.214 Sum_probs=113.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--------hHhhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI--------TSSYY 82 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 82 (222)
.++|+++|.+|+|||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999999987652 34456666666667777776 46799999997643321 33468
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence 89999999999999887776544432 3348999999999996533221 334568999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027503 163 EDAFLQMINQIHQ 175 (222)
Q Consensus 163 ~~~~~~l~~~i~~ 175 (222)
+++++++.+.+..
T Consensus 359 ~~L~~~L~~~l~~ 371 (449)
T PRK05291 359 DELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887753
No 157
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=7.5e-21 Score=157.12 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=107.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhh-------hHh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-FRAI-------TSS 80 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~-------~~~ 80 (222)
.+.++|+++|.+|||||||+|+|.+..+.... .+..+.+.....+..++ ..+.+|||||... +..+ ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 45679999999999999999999988765322 22233344445556655 4679999999743 2221 123
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEccc
Q 027503 81 YYRGALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--LYFMETSAM 157 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 157 (222)
.+..+|++++|+|..+. +.... .|+..+... +.|+++|+||+|+.+. .......+....+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 47799999999997653 33433 355545433 3677889999998642 2334445544443 579999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 027503 158 QNLNVEDAFLQMINQIH 174 (222)
Q Consensus 158 ~~~gi~~~~~~l~~~i~ 174 (222)
+|.|++++|++|.+.+.
T Consensus 200 tg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 200 SGKNIDGLLEYITSKAK 216 (339)
T ss_pred CccCHHHHHHHHHHhCC
Confidence 99999999999988643
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=4.3e-21 Score=165.30 Aligned_cols=156 Identities=22% Similarity=0.223 Sum_probs=111.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSS 80 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~ 80 (222)
...++|+|+|.+|||||||+|+|.+.... ....++.+.+.....+..++ ..+.+|||||.+. +...+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 44579999999999999999999987643 23345555555555666666 4588999999752 3344566
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC
Q 027503 81 YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL 160 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (222)
+++.+|++|+|+|++++.++.. ..|...+.. .++|+++|+||+|+.... .+....+....+ ..+++||++|.
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~ 185 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGR 185 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCC
Confidence 7899999999999998766543 334444443 348999999999986421 122222222233 34699999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027503 161 NVEDAFLQMINQIHQ 175 (222)
Q Consensus 161 gi~~~~~~l~~~i~~ 175 (222)
|+.++|+++++.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988754
No 159
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=2.8e-21 Score=142.54 Aligned_cols=146 Identities=21% Similarity=0.193 Sum_probs=101.8
Q ss_pred EEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhhhcCCc
Q 027503 16 VMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA--------ITSSYYRGAL 86 (222)
Q Consensus 16 ~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d 86 (222)
+++|.+|+|||||+++|.+.... ....+..+.+........++ ..+.+|||||...+.. .+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999986522 12233334444445555554 5789999999876433 3445678999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVEDA 165 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~ 165 (222)
++++|+|..++.+.... .+...+... +.|+++|+||+|+.+.... .......+. +++++|+++|.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999876544332 122333332 3899999999998753221 222334555 7899999999999999
Q ss_pred HHHHHHH
Q 027503 166 FLQMINQ 172 (222)
Q Consensus 166 ~~~l~~~ 172 (222)
|+++++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 160
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=3.2e-21 Score=147.60 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC----cCC---CCCCCCcceeeEEEEEEEC------------CeEEEEEEEeCCChhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD----EFR---LDSKPTIGVEFAYRNIRVG------------DKLIKAQIWDTAGQER 73 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~ 73 (222)
++|+++|++++|||||+++|... .+. ....+..+.+.....+.+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 1112223333333333332 2356889999999876
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHHH-HHH-----
Q 027503 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGKI-LAE----- 145 (222)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~-~~~----- 145 (222)
+..........+|++++|+|+.+.........+. .. .. .+.|+++|+||+|+....... .+.... +..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444445567789999999998854433322222 11 11 247999999999986432211 111211 111
Q ss_pred -HcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 146 -TEGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 146 -~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
..+++++++||++|.|+.++++++.+.+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23578999999999999999999988764
No 161
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.7e-20 Score=157.98 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhH---hhhcCC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FRAITS---SYYRGA 85 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~---~~~~~~ 85 (222)
..|+|+|.|+||||||+++|.+........|..+.......+.+++ ...|.+||+||... ...+.. ..+.++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3799999999999999999998664333334444444444444441 24789999999642 112333 345579
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC
Q 027503 86 LGALLVYDITRR---ATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL 160 (222)
Q Consensus 86 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (222)
+++|+|+|+++. .++++...|...+..+.. ..+|++||+||+|+.+ ..+....+....+.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 567777778888876643 4689999999999843 1344556666666889999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 027503 161 NVEDAFLQMINQIHQT 176 (222)
Q Consensus 161 gi~~~~~~l~~~i~~~ 176 (222)
|++++++++.+.+.+.
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998877654
No 162
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.87 E-value=3.9e-21 Score=142.56 Aligned_cols=140 Identities=15% Similarity=0.164 Sum_probs=98.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhHhhhcCCcEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FRAITSSYYRGALGAL 89 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~~~d~~i 89 (222)
+|+++|.+|+|||||+|+|.+... . ...+ ..+.+... .+|||||... +.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999876431 1 1111 12222222 2699999632 2222223478999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--eEEEEccccCCCHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL--YFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~~~~ 167 (222)
+|+|++++.++.. .|+..+ ..+.|+++++||+|+.+ ...+....++...++ +++++||++|.|++++|+
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 9999998876532 343332 12478999999999854 234556677777774 899999999999999999
Q ss_pred HHHHHHHH
Q 027503 168 QMINQIHQ 175 (222)
Q Consensus 168 ~l~~~i~~ 175 (222)
++.+.+.+
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 98877654
No 163
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.87 E-value=3.9e-22 Score=140.15 Aligned_cols=157 Identities=22% Similarity=0.378 Sum_probs=124.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+.+.++|-.+||||||+|....+.+.+.-.|+.|.+.. .+....+.+.+||.||+..|+++|..|++.++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 568999999999999999999888888888888877655 4444557889999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEEccccCCCHHHH
Q 027503 92 YDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKIL-----AETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
+|+.+++.+...+..+..+... .-.++|++|+|||.|+.+. ........- ...+.+..+.+|+++..+++-+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 9999998888777666555443 3477999999999998652 222221111 1223356899999999999999
Q ss_pred HHHHHHHHH
Q 027503 166 FLQMINQIH 174 (222)
Q Consensus 166 ~~~l~~~i~ 174 (222)
.+||++.-.
T Consensus 174 ~~Wli~hsk 182 (186)
T KOG0075|consen 174 LDWLIEHSK 182 (186)
T ss_pred HHHHHHHhh
Confidence 999988643
No 164
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=1.3e-20 Score=165.56 Aligned_cols=156 Identities=22% Similarity=0.262 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc-------CCCCCCC------CcceeeEEEEEEE-----CCeEEEEEEEeCCChhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDE-------FRLDSKP------TIGVEFAYRNIRV-----GDKLIKAQIWDTAGQER 73 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~ 73 (222)
.-+|+|+|+.++|||||+++|+... +...+.. ..+.++....+.+ ++..+.+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4579999999999999999998642 2222211 1244444333322 45568899999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---e
Q 027503 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL---Y 150 (222)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 150 (222)
|...+..++..+|++|+|+|++++.+......|...+. .++|+++|+||+|+.+.. ..+...++....++ +
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999999776666655544332 348999999999986422 22333455555565 4
Q ss_pred EEEEccccCCCHHHHHHHHHHHH
Q 027503 151 FMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 151 ~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
++++||++|.|+.++|+++++.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999998765
No 165
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=1.5e-20 Score=144.06 Aligned_cols=163 Identities=16% Similarity=0.154 Sum_probs=107.7
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhh
Q 027503 5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ----------ERF 74 (222)
Q Consensus 5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~ 74 (222)
.....+..++|+++|++|+|||||+++|.+..+.....++.+.+........+ ..+.+|||||. +.+
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHH
Confidence 34455678999999999999999999999876444444444444333322322 57899999994 344
Q ss_pred hhhhHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHcCC
Q 027503 75 RAITSSYYRGA---LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGKILAETEGL 149 (222)
Q Consensus 75 ~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~ 149 (222)
..+...++..+ +++++++|.+++.+.... .+...+. ..+.|+++++||+|+.+..... .+...........
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~ 169 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD 169 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 44555555544 678888998876443321 1122222 2348999999999986533221 1223333333367
Q ss_pred eEEEEccccCCCHHHHHHHHHHHHH
Q 027503 150 YFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 150 ~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
+++++|+++|.|++++++.|.+.+.
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 8999999999999999998877654
No 166
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1.2e-20 Score=160.75 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hh---hhhHhhhcC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FR---AITSSYYRG 84 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~---~~~~~~~~~ 84 (222)
...|+|+|.||||||||+++|.+........+..+.......+.+.+ ..|.+||+||... .. .....++..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 46799999999999999999998654433445555555555666665 5789999999532 11 122335678
Q ss_pred CcEEEEEEeCCCh----hhHHHHHHHHHHHHHHc-----------CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027503 85 ALGALLVYDITRR----ATFENTKKWLRELREFC-----------SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL 149 (222)
Q Consensus 85 ~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (222)
+|++|+|+|+++. ..+.++..|...+..+. ....|++||+||+|+.+..... +.........++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCC
Confidence 9999999999753 34455555555554443 1358999999999997543321 222333344578
Q ss_pred eEEEEccccCCCHHHHHHHHHHHHHHhh
Q 027503 150 YFMETSAMQNLNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 150 ~~~~~Sa~~~~gi~~~~~~l~~~i~~~~ 177 (222)
+++++||+++.|+++++.+|.+.+...+
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999887654
No 167
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=1.4e-20 Score=164.64 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=113.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
.+..+|+++|++++|||||+++|.+..+.....+..+.+.....+..++.. .+.||||||++.|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 467899999999999999999999888766555555555555555554432 7899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-------C--CeEEEEccccCC
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-------G--LYFMETSAMQNL 160 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~ 160 (222)
+|+|++++..-+... . +......++|+++++||+|+.+. ..+......... + .+++++||++|.
T Consensus 164 LVVda~dgv~~qT~e-~---i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTIE-A---ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHHH-H---HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 999998743212211 1 22222345899999999998642 222333332222 2 579999999999
Q ss_pred CHHHHHHHHHH
Q 027503 161 NVEDAFLQMIN 171 (222)
Q Consensus 161 gi~~~~~~l~~ 171 (222)
|++++|+++..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999874
No 168
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=2.3e-20 Score=159.45 Aligned_cols=160 Identities=24% Similarity=0.175 Sum_probs=110.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----------h-
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA----------I- 77 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~- 77 (222)
+..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++ ..+.+|||||...... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 45689999999999999999999987643 22334444454445555555 3689999999643221 1
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCCeEEE
Q 027503 78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET----EGLYFME 153 (222)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~ 153 (222)
...+++.+|++++|+|++++.+..+.. ++..+.. .++|+++|+||+|+.+......+........ .++++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence 134688999999999999987766643 3333332 3589999999999972111111111222222 2478999
Q ss_pred EccccCCCHHHHHHHHHHHHHH
Q 027503 154 TSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
+||++|.|+.++|+++.+.+..
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999886653
No 169
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=7.6e-21 Score=134.93 Aligned_cols=165 Identities=24% Similarity=0.485 Sum_probs=144.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
-.+||.++|++..|||||+-.+.++++.+.+..+.|++.--+.+.+.+..+.|.+||.+|++++..+.+....++-++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 57999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC-----HHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN-----EEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
+||++.+.++..+..|+.+.+...+.-+| ++||+|.|.--.-... ...++.+++..+.+.+.+|+..+.++..+
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 99999999999999999999988877677 5679999963211111 22356778888999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027503 166 FLQMINQIHQT 176 (222)
Q Consensus 166 ~~~l~~~i~~~ 176 (222)
|.-+..++...
T Consensus 178 FK~vlAklFnL 188 (205)
T KOG1673|consen 178 FKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHhCC
Confidence 98888877653
No 170
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.6e-21 Score=133.35 Aligned_cols=157 Identities=22% Similarity=0.408 Sum_probs=125.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
+.++|+++|-.++||||++..|.... +.+..||++.++.... + ..+.|.+||.+|++..+.+|++|+.+..++|+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVt--y--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT--Y--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEE--e--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 47899999999999999999998766 4566788877766433 3 34789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHH-HHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCHHH
Q 027503 91 VYDITRRATFENTKKWLRELR-EFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 164 (222)
|+|..+....++++..+..+. +......|++|.+||-|+++. ....++..+.. .....+.++++.+|.|+.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 999999888888877665543 333456899999999999754 33445444432 3345688999999999999
Q ss_pred HHHHHHHHHH
Q 027503 165 AFLQMINQIH 174 (222)
Q Consensus 165 ~~~~l~~~i~ 174 (222)
.|.|+...+.
T Consensus 169 glswlsnn~~ 178 (180)
T KOG0071|consen 169 GLSWLSNNLK 178 (180)
T ss_pred HHHHHHhhcc
Confidence 9999987653
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=5.9e-20 Score=137.39 Aligned_cols=155 Identities=23% Similarity=0.161 Sum_probs=104.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----------h-hhhH
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF----------R-AITS 79 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~-~~~~ 79 (222)
.++|+++|.+|+|||||+++|.+..... ...+..+.......+..++ ..+.+|||||.... . ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999999876432 2223333334344455555 35789999996432 1 1123
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHc----CCeEEEE
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEE-GKILAETE----GLYFMET 154 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~----~~~~~~~ 154 (222)
..+..+|++++|+|++++.+..... ++..+.. .+.|+++++||+|+.+......+. ........ ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 4567999999999999987655432 2222222 348999999999987643222222 22222332 3689999
Q ss_pred ccccCCCHHHHHHHHHHH
Q 027503 155 SAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 155 Sa~~~~gi~~~~~~l~~~ 172 (222)
||+++.|+.++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999888753
No 172
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=4.8e-20 Score=154.37 Aligned_cols=161 Identities=21% Similarity=0.195 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhHhhhcCC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAITSSYYRGA 85 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 85 (222)
..|+|+|.||||||||+|+|.+........|..+.......+...+. ..+.++||||...- .......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 36999999999999999999987654444555555555555665432 35899999996431 11222457899
Q ss_pred cEEEEEEeCC---ChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcccc
Q 027503 86 LGALLVYDIT---RRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--LYFMETSAMQ 158 (222)
Q Consensus 86 d~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 158 (222)
|++++|+|++ +...++....|+..+..+.. ...|++||+||+|+.....+ .+....+....+ .+++.+||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999988 44566777777777766542 34899999999998653322 233444444444 4789999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~~ 175 (222)
+.|+++++++|.+.+.+
T Consensus 318 g~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 318 GLGVKELCWDLMTFIEE 334 (390)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999887754
No 173
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.85 E-value=5e-20 Score=136.68 Aligned_cols=156 Identities=21% Similarity=0.138 Sum_probs=103.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhHhhhc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--------AITSSYYR 83 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~ 83 (222)
..+|+++|++|+|||||+++|.+.................. .........+.+|||||..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765433322221111111 1222233578999999965322 23445688
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccccCCCH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-GLYFMETSAMQNLNV 162 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi 162 (222)
.+|++++|+|+.++.+. ....+...+... +.|+++|+||+|+........+....+.... ..+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 99999999999987221 112233334333 4899999999998743332233344444444 368999999999999
Q ss_pred HHHHHHHHHH
Q 027503 163 EDAFLQMINQ 172 (222)
Q Consensus 163 ~~~~~~l~~~ 172 (222)
.++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.85 E-value=2.3e-20 Score=144.04 Aligned_cols=159 Identities=22% Similarity=0.213 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC---CCCCCcceeeEEEEEEEC---------------------------C----
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRL---DSKPTIGVEFAYRNIRVG---------------------------D---- 58 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~---------------------------~---- 58 (222)
++|+++|+.|+|||||+..|.+..... ......+........... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997542111 111111111111111100 1
Q ss_pred eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--
Q 027503 59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN-- 136 (222)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-- 136 (222)
....+.||||||++.+...+...+..+|++++|+|++++.........+..+.... ..|++||+||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHH
Confidence 11578999999999888888888889999999999997421111111222222221 14789999999996522111
Q ss_pred HHHHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 137 EEEGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 137 ~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.+..+.+... .+++++++||++|.|++++|+++.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1222333332 257899999999999999999987654
No 175
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=3.6e-20 Score=140.19 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=98.3
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhh
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----------RFRAI 77 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~ 77 (222)
+....++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++ .+.+|||||.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 346788999999999999999999998764333334444433333333333 68999999942 34444
Q ss_pred hHhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC--Ce
Q 027503 78 TSSYYR---GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEGKILAETEG--LY 150 (222)
Q Consensus 78 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~ 150 (222)
...+++ .+|++++|+|++++.+..+.. ++..+.. .++|+++|+||+|+.+.... ..+..+......+ ..
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 445555 358999999998865544432 2333332 35899999999998643221 1223334444443 47
Q ss_pred EEEEccccCCCHH
Q 027503 151 FMETSAMQNLNVE 163 (222)
Q Consensus 151 ~~~~Sa~~~~gi~ 163 (222)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999973
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=5.2e-20 Score=161.55 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC---cCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD---EFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
+.|+++|++++|||||+++|.+. .++....++.+.+.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47999999999999999999863 33444556677777766777766 68899999999999888888899999999
Q ss_pred EEEeCCCh---hhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCC--HHHHHHHHHHc----CCeEEEEccccC
Q 027503 90 LVYDITRR---ATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVN--EEEGKILAETE----GLYFMETSAMQN 159 (222)
Q Consensus 90 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~----~~~~~~~Sa~~~ 159 (222)
+|+|++++ ++++.+. .+.. .++| ++||+||+|+.+...+. .++...+.... +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 99999983 4444332 2222 2367 99999999997643221 22344444443 578999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027503 160 LNVEDAFLQMINQIHQ 175 (222)
Q Consensus 160 ~gi~~~~~~l~~~i~~ 175 (222)
.|++++++.+...+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999888766543
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=1.2e-19 Score=147.69 Aligned_cols=158 Identities=21% Similarity=0.168 Sum_probs=105.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF--------RAITSSYY 82 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~ 82 (222)
+.-.|+|+|.+|||||||+|+|++..+...+....+.......+...+ ...+.+|||||.... .......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~-~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED-DAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC-CceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 456799999999999999999999876544322222222222222222 258899999996432 22344567
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCCC
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNLN 161 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 161 (222)
..+|++++|+|+++.... .....+..+. ..+.|+++|+||+|+.............+....+ .+++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 899999999999983221 1122223333 2348999999999997432222334445544444 6799999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 162 VEDAFLQMINQI 173 (222)
Q Consensus 162 i~~~~~~l~~~i 173 (222)
++++++++.+.+
T Consensus 159 v~~L~~~L~~~l 170 (292)
T PRK00089 159 VDELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHHhC
Confidence 999999988875
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=7.5e-20 Score=162.43 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=112.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeE--EEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA--YRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
.+..+|+|+|+.++|||||+++|....+.....++.+.+.. ...+..++....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 46789999999999999999999987776544444443332 2233333445789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH-HHH------HHHcC--CeEEEEcccc
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG-KIL------AETEG--LYFMETSAMQ 158 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~------~~~~~--~~~~~~Sa~~ 158 (222)
+|+|+|++++........| ......++|++|++||+|+.... .+.. ..+ ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~I----~~~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI----NYIQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHHH----HHHHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999885322221111 12223458999999999986522 1221 111 12233 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQI 173 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i 173 (222)
|.|++++|+++....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999887753
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=8.2e-20 Score=163.48 Aligned_cols=155 Identities=16% Similarity=0.167 Sum_probs=113.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
..+...|+|+|+.++|||||+++|....+.....+..+.+.....+.+++ ..+.||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45789999999999999999999988777655445454555445555555 5789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH-HH------HHHHcC--CeEEEEccccC
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG-KI------LAETEG--LYFMETSAMQN 159 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~------~~~~~~--~~~~~~Sa~~~ 159 (222)
|+|||++++..-.... .+......++|++|++||+|+.+.. .+.. .. +...++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e----~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIE----AINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHH----HHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 9999999853211111 1222233458999999999996522 1111 11 122233 78999999999
Q ss_pred CCHHHHHHHHHHH
Q 027503 160 LNVEDAFLQMINQ 172 (222)
Q Consensus 160 ~gi~~~~~~l~~~ 172 (222)
.|++++|++|...
T Consensus 438 ~GI~eLle~I~~~ 450 (787)
T PRK05306 438 EGIDELLEAILLQ 450 (787)
T ss_pred CCchHHHHhhhhh
Confidence 9999999998753
No 180
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=6.8e-20 Score=161.00 Aligned_cols=146 Identities=18% Similarity=0.186 Sum_probs=111.8
Q ss_pred cCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh------hHhhh--cCCcEEEE
Q 027503 19 GDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI------TSSYY--RGALGALL 90 (222)
Q Consensus 19 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~i~ 90 (222)
|++|||||||+|+|.+..+...+.++.+.+.....+..++. .+.+|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999998776666777777777667777663 5799999998876543 34443 37899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
|+|.++.+.. ..+...+. ..++|+++|+||+|+.+..... .+.+.+++..+++++++||++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875321 22223332 2458999999999987644443 456788888999999999999999999999998
Q ss_pred HHH
Q 027503 171 NQI 173 (222)
Q Consensus 171 ~~i 173 (222)
+.+
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 754
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=5.7e-20 Score=140.18 Aligned_cols=159 Identities=22% Similarity=0.273 Sum_probs=107.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------------------CCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
..++|+++|+.++|||||+++|+........ ....+.+.....+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3578999999999999999999864422111 1223344444444412334689999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHc---
Q 027503 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEGKILAETE--- 147 (222)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~--- 147 (222)
.|.......+..+|++|+|+|+.++..... ...+..+... ++|++||+||+|+...+. ...+....+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 988888888999999999999997644322 3333334433 388999999999872111 1111111232222
Q ss_pred ---CCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 148 ---GLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 148 ---~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.++++++||.+|.|+.++++.+.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999998887653
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.7e-19 Score=154.34 Aligned_cols=146 Identities=23% Similarity=0.200 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhhhc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSSYYR 83 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 83 (222)
++|+|+|.+|||||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 23345555566666677766 6789999999876 2334556788
Q ss_pred CCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCC
Q 027503 84 GALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNL 160 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 160 (222)
.+|++|+|+|+.++.+..+ +..|+. .. +.|+++|+||+|+.+. .....++ ...++ .++++||.+|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~~---~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---KS---NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 9999999999988644332 233332 22 4899999999997541 1222233 34455 48999999999
Q ss_pred CHHHHHHHHHH
Q 027503 161 NVEDAFLQMIN 171 (222)
Q Consensus 161 gi~~~~~~l~~ 171 (222)
|+.++|+.+..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999887
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=2.1e-19 Score=153.63 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=108.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhHhhhcC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ--------ERFRAITSSYYRG 84 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~ 84 (222)
+|+|+|.+|||||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||||. +.+......++..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987643 22345555555666666666 46899999995 3344556778899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHH
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVE 163 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 163 (222)
+|++++|+|..++.+..+ ..+...++.. ++|+++|+||+|+.+.... ... ....++ +++++||.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 999999999988654433 2233333332 4899999999998653321 122 234565 79999999999999
Q ss_pred HHHHHHHHHHH
Q 027503 164 DAFLQMINQIH 174 (222)
Q Consensus 164 ~~~~~l~~~i~ 174 (222)
++++++.+.+.
T Consensus 150 ~ll~~i~~~l~ 160 (429)
T TIGR03594 150 DLLDAILELLP 160 (429)
T ss_pred HHHHHHHHhcC
Confidence 99999887763
No 184
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.83 E-value=3.9e-19 Score=137.11 Aligned_cols=117 Identities=18% Similarity=0.296 Sum_probs=88.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC-cEEEEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA-LGALLVY 92 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~i~v~ 92 (222)
+|+++|++|||||+|+++|....+.....+ ...+.........+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTS-IEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCc-EeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999877655433 22222222222223446799999999999998888999998 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHHH---cCCCCeEEEEEeCCCCCC
Q 027503 93 DITRR-ATFENTKKWLRELREF---CSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 93 d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~ivv~nK~Dl~~ 131 (222)
|+.+. .++..+..|+..+... ...++|++|++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 6777766666554322 235699999999999864
No 185
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=1.5e-19 Score=132.86 Aligned_cols=151 Identities=26% Similarity=0.254 Sum_probs=104.4
Q ss_pred EEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhHhhhcCCcEE
Q 027503 17 MIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-------AITSSYYRGALGA 88 (222)
Q Consensus 17 llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~~ 88 (222)
|+|++|||||||++++.+.... ....+..+............ ...+.+||+||..... .....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987654 33333333333333333332 3578999999976543 3445688999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHH---HHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEE---EGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
++|+|..+........ |..... ..+.|+++|+||+|+......... .........+.+++++|+.++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999987665544 333332 345899999999998764332221 112333345678999999999999999
Q ss_pred HHHHHHH
Q 027503 166 FLQMINQ 172 (222)
Q Consensus 166 ~~~l~~~ 172 (222)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 186
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=140.73 Aligned_cols=160 Identities=20% Similarity=0.143 Sum_probs=112.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSSY 81 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 81 (222)
.+.--|+++|.||+|||||+|+|.+......+....++......+...+ ...+.++||||... ........
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 4566799999999999999999999998776655554444444444433 35889999999542 22344567
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccccCC
Q 027503 82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQNL 160 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 160 (222)
+..+|++++|+|++++..-.+ ...++.+.. .+.|+++++||+|..+...........+..... ..++++||++|.
T Consensus 83 l~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred hccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 789999999999998543222 333444544 347999999999987654421223333333333 479999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027503 161 NVEDAFLQMINQIH 174 (222)
Q Consensus 161 gi~~~~~~l~~~i~ 174 (222)
|++.+.+.+...+-
T Consensus 159 n~~~L~~~i~~~Lp 172 (298)
T COG1159 159 NVDTLLEIIKEYLP 172 (298)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999988877654
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=3.8e-19 Score=152.23 Aligned_cols=159 Identities=25% Similarity=0.203 Sum_probs=108.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----------hhhh-
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----------FRAI- 77 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~- 77 (222)
...++|+|+|.+|+|||||+++|++.... ....+..+.+.....+..++ ..+.+|||||... +...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 35799999999999999999999986632 23344444444444455555 4578999999532 1111
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH----HcCCeEEE
Q 027503 78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE----TEGLYFME 153 (222)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~ 153 (222)
...++..+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+... ..+....... ...+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence 234678999999999999987766543 3333333 3489999999999874221 1111122222 23478999
Q ss_pred EccccCCCHHHHHHHHHHHHHH
Q 027503 154 TSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
+||++|.|+.++|+.+.+....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988876543
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=4.9e-19 Score=159.11 Aligned_cols=153 Identities=15% Similarity=0.148 Sum_probs=114.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----------hhHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA----------ITSSY 81 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 81 (222)
.++|+++|++|||||||+|+|.+........+..+++.....+.. ....+.+||+||...+.. ....+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 578999999999999999999987765555555555554444444 346789999999876532 12233
Q ss_pred h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503 82 Y--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN 159 (222)
Q Consensus 82 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (222)
+ ..+|++++|+|.++.+.. ..|...+.+. ++|+++++||+|+.+.+.+ ..+.+.+.+..+++++++|+.+|
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 3 488999999999986542 2244444433 4899999999998765544 35567788889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027503 160 LNVEDAFLQMINQI 173 (222)
Q Consensus 160 ~gi~~~~~~l~~~i 173 (222)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999998887654
No 189
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=126.70 Aligned_cols=162 Identities=22% Similarity=0.324 Sum_probs=121.4
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC--------CCC--CcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503 5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD--------SKP--TIGVEFAYRNIRVGDKLIKAQIWDTAGQERF 74 (222)
Q Consensus 5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (222)
+.....+..||+|.|+.++||||+++++........ ... ..++...+..+.+.+. ..+++++||||++|
T Consensus 3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF 81 (187)
T COG2229 3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERF 81 (187)
T ss_pred cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHH
Confidence 455677899999999999999999999987664211 111 1233334444445443 37899999999999
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEE
Q 027503 75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE--GLYFM 152 (222)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~ 152 (222)
+.+|..+++++.++|+++|.+.+..+ .....+..+..... +|++|+.||.|+.+. .+.+..++..... .++++
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCC--CCHHHHHHHHHhccCCCcee
Confidence 99999999999999999999999887 43444443433322 899999999999753 3455555555444 78999
Q ss_pred EEccccCCCHHHHHHHHHHH
Q 027503 153 ETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 153 ~~Sa~~~~gi~~~~~~l~~~ 172 (222)
+.+|..+++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999998877665
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=5e-19 Score=159.19 Aligned_cols=158 Identities=19% Similarity=0.209 Sum_probs=111.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----------hhhh-
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----------FRAI- 77 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~- 77 (222)
+..++|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+++. .+.+|||||... +..+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 34589999999999999999999988743 233455556665566667664 467999999531 2222
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH-HHHHH----cCCeEE
Q 027503 78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK-ILAET----EGLYFM 152 (222)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 152 (222)
....++.+|++++|+|++++.++.+.. ++..+.. .++|+++|+||+|+.+... .+... .+... ...+++
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEE
Confidence 234578999999999999988777754 3333332 3589999999999965321 11111 12221 135689
Q ss_pred EEccccCCCHHHHHHHHHHHHHH
Q 027503 153 ETSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 153 ~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
.+||++|.|+.++|+.+.+.+.+
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998887664
No 191
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=8.3e-20 Score=133.81 Aligned_cols=164 Identities=30% Similarity=0.520 Sum_probs=144.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
-..++++++|..|.|||+++++++.++|.-.+.++.+.+........+...++|..|||.|++.+..+..-++-.+.+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 46899999999999999999999999999999999999999887777666789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
++||+....++.++..|...+.+.... +|+++.|||.|+.+.. .......+-...++.|+++|++.+-++..-|-|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~N-iPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVREN-IPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcC-CCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence 999999999999999999999888877 9999999999986522 1233345556678899999999999999999999
Q ss_pred HHHHHHh
Q 027503 170 INQIHQT 176 (222)
Q Consensus 170 ~~~i~~~ 176 (222)
.+++...
T Consensus 165 arKl~G~ 171 (216)
T KOG0096|consen 165 ARKLTGD 171 (216)
T ss_pred hhhhcCC
Confidence 9887643
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=7.3e-19 Score=154.64 Aligned_cols=159 Identities=20% Similarity=0.249 Sum_probs=112.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc--CC-----CCC------CCCcceeeEEEEEEE-----CCeEEEEEEEeCCCh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDE--FR-----LDS------KPTIGVEFAYRNIRV-----GDKLIKAQIWDTAGQ 71 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~ 71 (222)
+..-+|+|+|+.++|||||+.+|+... +. ... ....+.++....+.+ ++..+.+.||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 455689999999999999999998632 11 010 011233333222222 455678999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-
Q 027503 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY- 150 (222)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 150 (222)
..|...+..++..+|++|+|+|++++........|.... ..++|+++|+||+|+.+.. .......+....++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence 999988999999999999999999876555555554322 2348999999999986422 122234444545553
Q ss_pred --EEEEccccCCCHHHHHHHHHHHHH
Q 027503 151 --FMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 151 --~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
++.+||++|.|+.+++++|.+.+-
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 899999999999999999987764
No 193
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2e-19 Score=130.03 Aligned_cols=160 Identities=24% Similarity=0.377 Sum_probs=120.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcC---C----CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEF---R----LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (222)
..+-|+|+|..++|||||+.++...-. . ..-.++.+.+.. ++.+.+ ..+.+||..|++..+++|..|+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVCN--APLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence 457799999999999999998764321 1 111344444444 444443 57899999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH---H---HcCCeEEEEcc
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTHSREVNEEEGKILA---E---TEGLYFMETSA 156 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~---~~~~~~~~~Sa 156 (222)
.+|++|+++|+++++.|+.....+..+.. ..-.++|+++.+||.|+.+... .++..... . .+..++.++||
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccchh
Confidence 99999999999999999887665555433 3456799999999999875322 23332222 2 23478999999
Q ss_pred ccCCCHHHHHHHHHHHHHHh
Q 027503 157 MQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 157 ~~~~gi~~~~~~l~~~i~~~ 176 (222)
.+|+||.+..+|++..+..+
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999988766
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=2e-18 Score=155.39 Aligned_cols=155 Identities=20% Similarity=0.184 Sum_probs=106.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSSY 81 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 81 (222)
...+|+|+|.+|||||||+|+|++..... ...++.+.+........++ ..|.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999865422 2234444444444444554 4689999999653 23445567
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503 82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN 161 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (222)
+..+|++|+|+|+.+.....+ ..|...+.. .++|+++|+||+|+.... ......+....+ ..+++||++|.|
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~G 423 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRG 423 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCC
Confidence 899999999999987533222 234444543 358999999999985421 111222222222 357899999999
Q ss_pred HHHHHHHHHHHHHH
Q 027503 162 VEDAFLQMINQIHQ 175 (222)
Q Consensus 162 i~~~~~~l~~~i~~ 175 (222)
+.++|+++++.+.+
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999987743
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=1.6e-18 Score=151.60 Aligned_cols=157 Identities=20% Similarity=0.126 Sum_probs=103.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCccee--eEEEEEEE--------------CCeEEEEEEEeCCChhhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVE--FAYRNIRV--------------GDKLIKAQIWDTAGQERF 74 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~l~Dt~G~~~~ 74 (222)
+..-|+++|++++|||||+++|.+..+......+.+.+ ........ ......+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45579999999999999999999877643322212111 11111110 000123889999999999
Q ss_pred hhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC------------CHHH
Q 027503 75 RAITSSYYRGALGALLVYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV------------NEEE 139 (222)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~ 139 (222)
..++..++..+|++++|+|+++ +++++.+. .+.. .++|+++++||+|+...... ....
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9999999999999999999997 44444432 1222 35899999999999642110 0000
Q ss_pred H------------HHHHH------------Hc--CCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 140 G------------KILAE------------TE--GLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 140 ~------------~~~~~------------~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
. ..+.. .+ .++++++||++|+|+++++.++.....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0 01111 11 368999999999999999988765443
No 196
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-21 Score=143.15 Aligned_cols=168 Identities=35% Similarity=0.616 Sum_probs=145.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe-EEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-LIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
.+..++++|+|.-|+|||+++.+++...|...+.+++++++..+....++. .+++.|||..|++++..++.-+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 578999999999999999999999999999999999999988877776554 3588899999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHc----CCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHcCCe-EEEEccccCCC
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFC----SSCMAIVLVGNKSDLTHSREVN-EEEGKILAETEGLY-FMETSAMQNLN 161 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~-~~~~Sa~~~~g 161 (222)
.++|||+++..+|+.+..|.+.+.... +..+|+++..||+|........ ......+.+++|+. .+++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 999999999999999999999985543 4567889999999986532222 36677888889875 89999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027503 162 VEDAFLQMINQIHQT 176 (222)
Q Consensus 162 i~~~~~~l~~~i~~~ 176 (222)
+.|.-..+++.+.-.
T Consensus 182 i~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 182 IPEAQRELVEKILVN 196 (229)
T ss_pred hhHHHHHHHHHHHhh
Confidence 999999998887643
No 197
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=7.6e-18 Score=132.47 Aligned_cols=151 Identities=24% Similarity=0.228 Sum_probs=103.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhHhhhcCCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-------AITSSYYRGAL 86 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 86 (222)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+++ ..+.+||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764333334444555555566655 578999999975322 22345788999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHH-----------------------------------------HHHH-----------
Q 027503 87 GALLVYDITRRA-TFENTKKWLRE-----------------------------------------LREF----------- 113 (222)
Q Consensus 87 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------l~~~----------- 113 (222)
++++|+|++++. ....+...+.. +.++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 22222222211 1111
Q ss_pred -----------cC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 114 -----------CS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 114 -----------~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.+ .-+|+++|+||+|+.. .++...++.. ..++++||++|.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 00 1268999999999854 3444445443 4589999999999999999988754
No 198
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.9e-18 Score=143.24 Aligned_cols=151 Identities=21% Similarity=0.154 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh---------hhhhHhhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF---------RAITSSYY 82 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 82 (222)
..|+|+|.||||||||+|+|.+..... ...|.++.+..+......+ ..|.++||+|.+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 679999999999999999999987653 3467777787777777777 45899999996531 23455678
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..||++|+|+|...+-+-.+ ......++. .++|+++|+||+|-.. ..+.+.+|...-.-.++.+||.+|.|+
T Consensus 82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr~---~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 82 EEADVILFVVDGREGITPAD-EEIAKILRR---SKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence 89999999999988654333 222333342 2389999999999642 123333444433346899999999999
Q ss_pred HHHHHHHHHHH
Q 027503 163 EDAFLQMINQI 173 (222)
Q Consensus 163 ~~~~~~l~~~i 173 (222)
.++++.++..+
T Consensus 154 ~dLld~v~~~l 164 (444)
T COG1160 154 GDLLDAVLELL 164 (444)
T ss_pred HHHHHHHHhhc
Confidence 99999999887
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.79 E-value=2.7e-18 Score=146.45 Aligned_cols=155 Identities=17% Similarity=0.111 Sum_probs=102.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC--cCC-----------------------------CCCCCCcceeeEEEEEEEC
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARD--EFR-----------------------------LDSKPTIGVEFAYRNIRVG 57 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 57 (222)
....++|+++|+.++|||||+++|+.. ... .......+.+.....+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 456789999999999999999999852 111 011223344444444443
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCCCCCCCC-
Q 027503 58 DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKK-WLRELREFCSSCMAIVLVGNKSDLTHSREV- 135 (222)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~- 135 (222)
....+.||||||++.|.......+..+|++++|+|+++++++..... +...+..... ..|++|++||+|+.+....
T Consensus 83 -~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 83 -DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred -CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHH
Confidence 44689999999999887666667889999999999998754322111 1111222222 2578899999999642211
Q ss_pred ---CHHHHHHHHHHcC-----CeEEEEccccCCCHHHHH
Q 027503 136 ---NEEEGKILAETEG-----LYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 136 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~ 166 (222)
...+...++...+ ++++++||++|.|+.+.+
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1233445555554 579999999999998744
No 200
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=5e-18 Score=126.22 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=98.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhhhHhhhc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----------RFRAITSSYYR 83 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~ 83 (222)
.|+++|.+|+|||||++.+.+..+.....++.+.+.....+..++ .+.+||+||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996555444445544444444444444 78999999943 23344444444
Q ss_pred ---CCcEEEEEEeCCChhhH--HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--HHHHHHHH--HcCCeEEEE
Q 027503 84 ---GALGALLVYDITRRATF--ENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE--EEGKILAE--TEGLYFMET 154 (222)
Q Consensus 84 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~--~~~~~~~~~ 154 (222)
..+++++++|.++..+. ..+..|+.. . +.|+++|+||+|+........ ........ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 45788999999876322 223333322 2 389999999999854322111 11122222 334679999
Q ss_pred ccccCCCHHHHHHHHHHH
Q 027503 155 SAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 155 Sa~~~~gi~~~~~~l~~~ 172 (222)
|++++.|+.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 201
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=2.6e-18 Score=133.11 Aligned_cols=146 Identities=24% Similarity=0.224 Sum_probs=93.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCC-------------------------------CCCCcceeeEEEEEEECCeEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLD-------------------------------SKPTIGVEFAYRNIRVGDKLIK 62 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 62 (222)
||+|+|++|+|||||+++|+...-... ..+..+.+.....+..+ ...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 689999999999999999975332111 01223333333333333 357
Q ss_pred EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC----CHH
Q 027503 63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV----NEE 138 (222)
Q Consensus 63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~ 138 (222)
+.+|||||++.+.......+..+|++++|+|++++..-.. ......+.... ..++++|+||+|+.+.... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8899999998877666777899999999999987632222 22222222221 1357778999998642211 112
Q ss_pred HHHHHHHHcC---CeEEEEccccCCCHHH
Q 027503 139 EGKILAETEG---LYFMETSAMQNLNVED 164 (222)
Q Consensus 139 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 164 (222)
+...+....+ .+++++||++|.|+.+
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 2334445555 4599999999999875
No 202
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=6.7e-18 Score=140.29 Aligned_cols=153 Identities=22% Similarity=0.209 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA--------ITSSYY 82 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 82 (222)
-++++++|.||+|||||+|.|.+.+.. .+..|.++.++-...+.++| +.+.++||+|..+... -....+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 479999999999999999999998865 44578888888888999988 6689999999654322 133567
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..||.+++|+|.+.+.+-.+.. . ......+.|+++|.||.|+......... ....+.+++.+|+++|+|+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~-~----~~~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLA-L----IELLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGL 364 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHH-H----HHhcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCH
Confidence 8999999999999863323221 1 1134455899999999999864332111 2223457999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027503 163 EDAFLQMINQIHQT 176 (222)
Q Consensus 163 ~~~~~~l~~~i~~~ 176 (222)
+.+.+.|.+.+...
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99998888877655
No 203
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=3.8e-18 Score=141.38 Aligned_cols=171 Identities=22% Similarity=0.175 Sum_probs=118.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----------hhh-hh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----------FRA-IT 78 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~-~~ 78 (222)
..+||+|+|.|++|||||+|+|++.+.... ..+..+.+.-...+..++ ..+.++||+|... |.. -.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 579999999999999999999999875433 345555555556666666 4679999999432 221 12
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-H----cCCeEEE
Q 027503 79 SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE-T----EGLYFME 153 (222)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~~ 153 (222)
...+..+|++++|+|+..+.+-++.+ ....+. ..+.+++||+||+|+.+......+..+.... . ...+++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 34677999999999999987766533 333333 3448899999999998754333333332222 2 2368999
Q ss_pred EccccCCCHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027503 154 TSAMQNLNVEDAFLQMINQIHQTTIQKSLCAKMND 188 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~~~ 188 (222)
+||.+|.|+.++|+.+.. +++....+-+++.+|+
T Consensus 331 iSA~~~~~i~~l~~~i~~-~~~~~~~ri~Ts~LN~ 364 (444)
T COG1160 331 ISALTGQGLDKLFEAIKE-IYECATRRISTSLLNR 364 (444)
T ss_pred EEecCCCChHHHHHHHHH-HHHHhccccCHHHHHH
Confidence 999999999999976655 4445555555544444
No 204
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.3e-19 Score=124.47 Aligned_cols=161 Identities=21% Similarity=0.275 Sum_probs=120.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
++..+|+++|-.|+||++++-++.-.+. ....|+++.+..... .+.+++.+||..|+...+..|+-|+.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~----yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVP----YKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccccc----cccccceeeEccCcccccHHHHHHhcccceEE
Confidence 3789999999999999999988876664 445677777666333 35588999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH----HHHHHHcCCeEEEEccccCCCHHH
Q 027503 90 LVYDITRRATFENTKK-WLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG----KILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
+|+|.+|......... ++..+.+-.-.+..++|++||.|... .....|.. ....+.+-+.++++||.+|+|++.
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~-~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG-ALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh-hhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999999876555443 33444333333366788899999854 21112222 122233447899999999999999
Q ss_pred HHHHHHHHHHHh
Q 027503 165 AFLQMINQIHQT 176 (222)
Q Consensus 165 ~~~~l~~~i~~~ 176 (222)
.++|+.+.+.++
T Consensus 170 ~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 170 AMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHhcc
Confidence 999999877643
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.78 E-value=5.5e-18 Score=148.74 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=108.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhC--cCCCCC------------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD--EFRLDS------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITS 79 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 79 (222)
+|+|+|+.++|||||+++|+.. .+.... ....+.++......+.+....+.+|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999852 221111 11223444444333434447899999999999998899
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHH-------HHcCCeE
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV-NEEEGKILA-------ETEGLYF 151 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~-------~~~~~~~ 151 (222)
.++..+|++++|+|+.+.. ......|+..+... ++|++||+||+|+.+.+.. -..+...+. ....+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998753 33445565555543 4899999999998653211 012222222 2235789
Q ss_pred EEEccccCC----------CHHHHHHHHHHHH
Q 027503 152 METSAMQNL----------NVEDAFLQMINQI 173 (222)
Q Consensus 152 ~~~Sa~~~~----------gi~~~~~~l~~~i 173 (222)
+.+||++|. |+..+|+.+++.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999996 7888888887765
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.78 E-value=3.9e-18 Score=145.47 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=99.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-------------------------------CCCCCcceeeEEEEEEECC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRL-------------------------------DSKPTIGVEFAYRNIRVGD 58 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 58 (222)
...++|+++|++++|||||+++|+...-.. ...+..+.+.....+. .
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~--~ 81 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE--T 81 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe--c
Confidence 456899999999999999999998432110 1123333444333333 3
Q ss_pred eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC---
Q 027503 59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--- 134 (222)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--- 134 (222)
....+.+|||||++.|.......+..+|++++|+|+++...+.. ...++..+.... ..|++|++||+|+.+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHHH
Confidence 44689999999998876655566789999999999987312211 122222222222 146899999999975211
Q ss_pred -CCHHHHHHHHHHcC-----CeEEEEccccCCCHHHHH
Q 027503 135 -VNEEEGKILAETEG-----LYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 135 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~ 166 (222)
...++...+....+ ++++++||++|.|+.+.+
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 01123344444444 579999999999998754
No 207
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.77 E-value=3.3e-18 Score=119.76 Aligned_cols=159 Identities=22% Similarity=0.300 Sum_probs=120.0
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
...+.+||+++|-.++|||||++.|.+... ..-.||.+.+.. .+...+ .+.+.+||.+|+...+..|..|+.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k--~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTK--KVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceE--EEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 346899999999999999999999987653 333455555444 334433 3689999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHH-HHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCC
Q 027503 88 ALLVYDITRRATFENTKKWLREL-REFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLN 161 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 161 (222)
+|+|+|.+|...|+++...+.++ ....-..+|+++..||.|+..... .++....+ ..+...+.++|+.+++|
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~eeia~klnl~~lrdRswhIq~csals~eg 166 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--VEEIALKLNLAGLRDRSWHIQECSALSLEG 166 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--hHHHHHhcchhhhhhceEEeeeCccccccC
Confidence 99999999988888876655554 333445699999999999865322 22222222 22336789999999999
Q ss_pred HHHHHHHHHHH
Q 027503 162 VEDAFLQMINQ 172 (222)
Q Consensus 162 i~~~~~~l~~~ 172 (222)
+....+|+...
T Consensus 167 ~~dg~~wv~sn 177 (185)
T KOG0074|consen 167 STDGSDWVQSN 177 (185)
T ss_pred ccCcchhhhcC
Confidence 99998887654
No 208
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=2.6e-17 Score=144.40 Aligned_cols=158 Identities=20% Similarity=0.142 Sum_probs=102.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceee--EEEEEEE----CCeE-----E-----EEEEEeCCChh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEF--AYRNIRV----GDKL-----I-----KAQIWDTAGQE 72 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~-----~-----~~~l~Dt~G~~ 72 (222)
..+.+.|+++|++++|||||+++|.+..+........+.+. +...... .+.. . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 34677899999999999999999987654322221111111 1111110 0111 1 26899999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC----CH--------
Q 027503 73 RFRAITSSYYRGALGALLVYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV----NE-------- 137 (222)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~----~~-------- 137 (222)
.|..++...+..+|++++|+|+++ +++++.+. .+.. .++|+++++||+|+...... ..
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 999988888999999999999997 45554433 1222 35899999999998531110 00
Q ss_pred HH-----------HHHHHHH---------------cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 138 EE-----------GKILAET---------------EGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 138 ~~-----------~~~~~~~---------------~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.. ....... ..++++++||.+|.|+.++++.+...+
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 0001111 126799999999999999998876543
No 209
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.77 E-value=1.9e-17 Score=146.05 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc---CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE---FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
+-|+++|+.++|||||+++|.+.. +.+......+++.....+...+. ..+.+||+||++.|.......+..+|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 358999999999999999998643 33334445555555444444322 35799999999998777777889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCC--HHHHHHHHHHcC---CeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVN--EEEGKILAETEG---LYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~ 163 (222)
+|+|++++.. ......+..+... ++| ++||+||+|+.+..... .++...+....+ .+++++||++|.|++
T Consensus 80 LVVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 80 LVVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 9999987421 1112222222222 245 57899999997532221 123334444333 689999999999999
Q ss_pred HHHHHHHHHHH
Q 027503 164 DAFLQMINQIH 174 (222)
Q Consensus 164 ~~~~~l~~~i~ 174 (222)
++++.|.....
T Consensus 156 ~L~~~L~~~~~ 166 (614)
T PRK10512 156 ALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHhhc
Confidence 99988876543
No 210
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=3.5e-17 Score=125.21 Aligned_cols=148 Identities=19% Similarity=0.165 Sum_probs=96.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC------CC--------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRL------DS--------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI 77 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 77 (222)
.++|+++|+.++|||||+++|+...... .+ ....+.+.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4789999999999999999998531000 00 012233333334444444567899999999888777
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHHHHHHc-----C
Q 027503 78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVNE---EEGKILAETE-----G 148 (222)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~-----~ 148 (222)
....+..+|++++|+|+..+..-. ....+..+... ++| +++++||+|+........ .+...+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 778888999999999998753322 22333333333 366 778899999864222111 1233333333 3
Q ss_pred CeEEEEccccCCCHH
Q 027503 149 LYFMETSAMQNLNVE 163 (222)
Q Consensus 149 ~~~~~~Sa~~~~gi~ 163 (222)
++++++||.+|.++.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 689999999999853
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=9.7e-18 Score=141.96 Aligned_cols=166 Identities=20% Similarity=0.218 Sum_probs=103.4
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC---CCCCCCcceeeEEEEEEE------------------C--C--
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFR---LDSKPTIGVEFAYRNIRV------------------G--D-- 58 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~-- 58 (222)
||+. ....++|+++|+.++|||||+.+|.+.... .......+.+.......+ + +
T Consensus 2 ~~~~-~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
T PRK04000 2 MWEK-VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSE 80 (411)
T ss_pred Cccc-CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccc
Confidence 4443 345699999999999999999999653211 111112222221111010 0 0
Q ss_pred --eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503 59 --KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 59 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (222)
....+.+|||||++.|..........+|++++|+|++++. ...... .+..+.... ..|+++|+||+|+.+....
T Consensus 81 ~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 81 TELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDIIG--IKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred cccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHHcC--CCcEEEEEEeeccccchhH
Confidence 1257899999999988766666667789999999999653 111111 122222221 1468999999999753321
Q ss_pred C--HHHHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 136 N--EEEGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 136 ~--~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
. .+....+... .+.+++++||++|.|++++++.|...+
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 1 1223333332 247899999999999999999887755
No 212
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=3.1e-17 Score=122.75 Aligned_cols=162 Identities=18% Similarity=0.234 Sum_probs=112.4
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhh
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG----------QERFRA 76 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~ 76 (222)
-+.+...-|+++|.+|||||||||+|+++.-..-...+.|.+.....+.+++. +.++|.|| .+.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 34456778999999999999999999997633333466667777777777763 78999999 345666
Q ss_pred hhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH---HHHHHHcCCe
Q 027503 77 ITSSYYRG---ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG---KILAETEGLY 150 (222)
Q Consensus 77 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~ 150 (222)
+...|+.. ..++++++|+..+..-.+. ..++.+.. .++|++||+||+|.....+...... ..+.......
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc
Confidence 77777753 4678889999876544332 22233333 3499999999999986444332111 1222222222
Q ss_pred --EEEEccccCCCHHHHHHHHHHHHHH
Q 027503 151 --FMETSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 151 --~~~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
++..|+..+.|++++...|.+.+.+
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhhc
Confidence 8889999999999999888877654
No 213
>PRK10218 GTP-binding protein; Provisional
Probab=99.77 E-value=3e-17 Score=144.02 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=110.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh--CcCCCCC------------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFAR--DEFRLDS------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (222)
...+|+|+|+.++|||||+++|+. +.+.... ..+.+.++......+......+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999986 3332211 22345566555566655668999999999999999
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcC
Q 027503 77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV-NEEEGKILAE-------TEG 148 (222)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~ 148 (222)
.+..+++.+|++|+|+|+.+...... ..++..+.. .++|+++++||+|+...+.. ..++...+.. ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 99999999999999999987643222 333333333 34889999999998643211 1112222221 134
Q ss_pred CeEEEEccccCC----------CHHHHHHHHHHHH
Q 027503 149 LYFMETSAMQNL----------NVEDAFLQMINQI 173 (222)
Q Consensus 149 ~~~~~~Sa~~~~----------gi~~~~~~l~~~i 173 (222)
++++.+||.+|. |+..+++.+++.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 789999999998 5777777666554
No 214
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.77 E-value=9.2e-18 Score=142.10 Aligned_cols=162 Identities=24% Similarity=0.230 Sum_probs=104.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCCCcceeeEEEE--------------EEE----CC------eEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRL---DSKPTIGVEFAYRN--------------IRV----GD------KLIK 62 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 62 (222)
...++|+++|++++|||||+++|.+..... ......+....... ++. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467899999999999999999997532211 11111111111100 001 11 1357
Q ss_pred EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHH
Q 027503 63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEG 140 (222)
Q Consensus 63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~ 140 (222)
+.+||+||++.|...+......+|++++|+|++++.........+..+... .. .|+++++||+|+.+.... ..++.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi-~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GI-KNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CC-CeEEEEEEccccCCHHHHHHHHHHH
Confidence 899999999999888888888999999999999753112222223323222 11 468999999999753221 11222
Q ss_pred HHHHHHc---CCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 141 KILAETE---GLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 141 ~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
..+.... +++++++||++|.|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 3333332 57899999999999999999887654
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.76 E-value=1.5e-17 Score=130.94 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=80.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDS----------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI 77 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 77 (222)
+|+++|+.|+|||||+++|+...-.... ....+.++......+......+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863211000 011122233333333334478999999999998888
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 78 TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
+..+++.+|++++|+|+.+.... ....++..+... ++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 88999999999999999987543 334455555443 489999999999863
No 216
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.76 E-value=1.4e-17 Score=119.37 Aligned_cols=135 Identities=24% Similarity=0.269 Sum_probs=96.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----hhhhhhHhhhcCCcEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----RFRAITSSYYRGALGAL 89 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i 89 (222)
||+|+|+.|||||||+++|.+.+. .+..|..+.+. + .++||||.- .+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999988664 33333322221 1 358999933 23333445556999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccccCCCHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~ 168 (222)
+|.|++++.+... ..+...+ ..|+|=|+||+|+.. .....+.++.+....|+. +|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-P~fa~~f------~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PGFASMF------NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-chhhccc------CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998754322 1111111 279999999999974 233566777888888864 899999999999999988
Q ss_pred HH
Q 027503 169 MI 170 (222)
Q Consensus 169 l~ 170 (222)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 217
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=3.7e-17 Score=128.68 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=110.9
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh------------
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER------------ 73 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------------ 73 (222)
+.+-.+.++|+++|.||+|||||.|.+++..+.+.+....+.....-.+-..+. ..+.|+||||.-.
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhhHHHHHH
Confidence 345568999999999999999999999999988777665554444433333333 4899999999321
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC-------------CCCC---H
Q 027503 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS-------------REVN---E 137 (222)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~-------------~~~~---~ 137 (222)
+-......+..||.+++|+|+++...... ...+..+..+. .+|-++|+||+|.... ..+. .
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 11133456779999999999997433222 22344454443 2788999999997532 1111 1
Q ss_pred HHHHHHHHHc---------CC----eEEEEccccCCCHHHHHHHHHHHH
Q 027503 138 EEGKILAETE---------GL----YFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 138 ~~~~~~~~~~---------~~----~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
+..+.|.... |. .+|.+||+.|+|++++-++|...+
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 2222232221 11 389999999999999999988754
No 218
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.8e-17 Score=142.02 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=122.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh------hhhhHhhhc-
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF------RAITSSYYR- 83 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~~- 83 (222)
+..+|+++|+||||||||+|+|.+......+.|..+++.....+...+. .++++|.||.-.. +...++|+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 3456999999999999999999999888888999988888888888774 4899999995432 234455543
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 84 -GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 84 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..|+++-|+|+++.+..-.+ ..++.+. ++|++++.|++|..+.+.+ .-+...+.+..|+|+++++|++|.|+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyl---tlQLlE~---g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYL---TLQLLEL---GIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHHHHHHH---HHHHHHc---CCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCH
Confidence 66999999999987543322 2233333 4899999999998765443 45678889999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027503 163 EDAFLQMINQIHQ 175 (222)
Q Consensus 163 ~~~~~~l~~~i~~ 175 (222)
+++...+++....
T Consensus 153 ~~l~~~i~~~~~~ 165 (653)
T COG0370 153 EELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHHhccc
Confidence 9999888764443
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=2.5e-17 Score=128.03 Aligned_cols=113 Identities=25% Similarity=0.294 Sum_probs=80.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC-----------------CCCcceeeEEEEEE--E---CCeEEEEEEEeCCCh
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDS-----------------KPTIGVEFAYRNIR--V---GDKLIKAQIWDTAGQ 71 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~l~Dt~G~ 71 (222)
+|+|+|+.++|||||+++|+........ ....+.+.....+. + ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875443221 01112222222222 2 345678999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
..+......++..+|++++|+|+.+..+... ..|+..+.. .++|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988888889999999999999988765543 334343322 348999999999975
No 220
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.73 E-value=1.8e-17 Score=140.10 Aligned_cols=168 Identities=24% Similarity=0.291 Sum_probs=124.3
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503 5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG 84 (222)
Q Consensus 5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (222)
+..+....+||+++|+.|+|||||+-+|...+|.+.-.+-. ..+ ....+.....+...++|++....-+......++.
T Consensus 2 ~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i-~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eirk 79 (625)
T KOG1707|consen 2 SDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRI-LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRK 79 (625)
T ss_pred CCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccC-Ccc-ccCCccCcCcCceEEEecccccchhHHHHHHHhh
Confidence 45566789999999999999999999999998865542222 111 1113333334567899998766555566788999
Q ss_pred CcEEEEEEeCCChhhHHHHH-HHHHHHHHHc--CCCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHcC-C-eEEEEcccc
Q 027503 85 ALGALLVYDITRRATFENTK-KWLRELREFC--SSCMAIVLVGNKSDLTHSREVNEEE-GKILAETEG-L-YFMETSAMQ 158 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~ 158 (222)
||++.++|+++++++++.+. +|+..++... ..++|+|+||||+|..+....+.+. ...+..++. + ..++|||++
T Consensus 80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~ 159 (625)
T KOG1707|consen 80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALT 159 (625)
T ss_pred cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhh
Confidence 99999999999999999985 5999998876 3669999999999998755543333 222222222 3 378999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQIH 174 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~ 174 (222)
-.++.++|....+++.
T Consensus 160 ~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhHhhhhhhhheee
Confidence 9999999977766654
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.73 E-value=4.2e-17 Score=127.30 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=91.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCC-------------------------------CCCCCCcceeeEEEEEEECCeEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFR-------------------------------LDSKPTIGVEFAYRNIRVGDKLIK 62 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (222)
+|+++|+.++|||||+.+|+...-. .......+.+.....+... ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence 5899999999999999998632100 0001222333333344444 468
Q ss_pred EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC--C
Q 027503 63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRAT---F---ENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR--E 134 (222)
Q Consensus 63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~--~ 134 (222)
+.+|||||+..+...+...+..+|++++|+|++++.. + ......+..... .. ..|+++++||+|+.... .
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG-VKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC-CCeEEEEEEccccccccccH
Confidence 8999999998777767777889999999999998521 1 111222222222 22 26889999999987321 1
Q ss_pred CCHH----HHHHHHHHc-----CCeEEEEccccCCCHH
Q 027503 135 VNEE----EGKILAETE-----GLYFMETSAMQNLNVE 163 (222)
Q Consensus 135 ~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~gi~ 163 (222)
...+ ....+.... +++++++||++|.|+.
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 0011 112223333 3679999999999986
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.73 E-value=1.9e-16 Score=133.62 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=95.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-----------C---CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRL-----------D---SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF 74 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (222)
....++|+++|+.++|||||+++|++..... . .....+.+.......+......+.++||||++.|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3457899999999999999999998632100 0 0012233333344445444457899999999988
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHHHHHHcC--
Q 027503 75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVNE---EEGKILAETEG-- 148 (222)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~-- 148 (222)
.......+..+|++++|+|++++..-.. ..++..+... ++| +++++||+|+.+...... ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 7766777789999999999987532222 2233333333 377 578899999874322211 23334444443
Q ss_pred ---CeEEEEccccCC
Q 027503 149 ---LYFMETSAMQNL 160 (222)
Q Consensus 149 ---~~~~~~Sa~~~~ 160 (222)
++++++||.+|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 165 GDDIPVIRGSALKAL 179 (394)
T ss_pred cCCccEEEeeccccc
Confidence 589999999983
No 223
>COG2262 HflX GTPases [General function prediction only]
Probab=99.73 E-value=2.3e-16 Score=129.17 Aligned_cols=162 Identities=21% Similarity=0.127 Sum_probs=125.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF--------RAITSSY 81 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~ 81 (222)
...+.|+++|..|+|||||+|.|.+........-..+.+...+.+.+.+ ...+.+.||.|.-.. ...+...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 4567899999999999999999998887777777788888888888876 347899999995421 1224445
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503 82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN 161 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (222)
...+|+++.|+|+++|...+.+..-...+.+.....+|+|+|.||+|+..... .......... ..+.+||++|.|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~g 343 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEG 343 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcC
Confidence 66899999999999997777777777777777666699999999999765333 1111111112 589999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027503 162 VEDAFLQMINQIHQTT 177 (222)
Q Consensus 162 i~~~~~~l~~~i~~~~ 177 (222)
++.+.+.|.+.+....
T Consensus 344 l~~L~~~i~~~l~~~~ 359 (411)
T COG2262 344 LDLLRERIIELLSGLR 359 (411)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999988877554
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=1.3e-16 Score=134.81 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=97.3
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcC----------------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEF----------------RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (222)
++....++|+++|+.++|||||+++|++... ...... +.+.....+.++.....+.+|||||
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--G~Ti~~~~~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKAR--GITINTAHVEYETENRHYAHVDCPG 84 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhc--CcceeeEEEEEcCCCEEEEEEECCc
Confidence 4456789999999999999999999974210 001112 3333334445544556789999999
Q ss_pred hhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHH
Q 027503 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV-LVGNKSDLTHSREVN---EEEGKILAET 146 (222)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~ 146 (222)
++.|.......+..+|++++|+|++++..... ...+..+... ++|.+ +++||+|+.+..... .++...+...
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 99887666667788999999999987432222 2223333322 36765 679999987532211 1234455555
Q ss_pred cC-----CeEEEEccccCC
Q 027503 147 EG-----LYFMETSAMQNL 160 (222)
Q Consensus 147 ~~-----~~~~~~Sa~~~~ 160 (222)
.+ ++++++|+.+|.
T Consensus 161 ~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 161 YDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred cCCCccCccEEECcccccc
Confidence 44 689999999875
No 225
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=125.72 Aligned_cols=160 Identities=20% Similarity=0.210 Sum_probs=116.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh-----hhh----hhhHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-----RFR----AITSSY 81 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~----~~~~~~ 81 (222)
-.+.|+|.|.||||||||++.+.+........|.++..+...++..++ .+++++||||.= +.+ ....+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 456799999999999999999999887777778887888888877766 678999999921 111 122233
Q ss_pred hcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcccc
Q 027503 82 YRGALGALLVYDITR--RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG-LYFMETSAMQ 158 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 158 (222)
-+-.++++|+||.+. +.+.+.-..++..+..... .|+++|.||+|+.+.+.+. ++.......+ .....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeee
Confidence 345688999999885 4566666667788877765 7999999999998644433 2333333333 4477888999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 027503 159 NLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~~~ 176 (222)
+.+++.+-..+...+.+.
T Consensus 321 ~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 321 GCGLDKLREEVRKTALEP 338 (346)
T ss_pred hhhHHHHHHHHHHHhhch
Confidence 999988877777665443
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.72 E-value=1.8e-16 Score=123.82 Aligned_cols=150 Identities=19% Similarity=0.144 Sum_probs=94.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCC-----------------------cceeeEE---------------EEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPT-----------------------IGVEFAY---------------RNIR 55 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~---------------~~~~ 55 (222)
||+++|+.++|||||+++|..+.+....... .+.+... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999876654322100 0001000 0111
Q ss_pred ECCeEEEEEEEeCCChhhhhhhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503 56 VGDKLIKAQIWDTAGQERFRAITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133 (222)
Q Consensus 56 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 133 (222)
.. ...+.++||||++.|.......+. .+|++++|+|++.+..-. ...++..+... ++|+++|+||+|+.+..
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~---~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL---NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEECccccCHH
Confidence 11 247899999999887654444443 689999999998764322 23344444433 38999999999986432
Q ss_pred CCCHHHHHHHHHH-----------------------------cCCeEEEEccccCCCHHHHHHHHH
Q 027503 134 EVNEEEGKILAET-----------------------------EGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 134 ~~~~~~~~~~~~~-----------------------------~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
... .....+... ..++++.+|+.+|.|++++...|.
T Consensus 155 ~~~-~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQ-ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHH-HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 211 111111111 124899999999999999886653
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=99.72 E-value=3.3e-16 Score=132.22 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=101.6
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCc-------CCCC-------CCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDE-------FRLD-------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
++....++|+++|++++|||||+++|++.. +... .....+.+.......+......+.|+||||++
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 344567999999999999999999998621 0000 00112333333334444444578999999998
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHcC
Q 027503 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV-LVGNKSDLTHSREVN---EEEGKILAETEG 148 (222)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~ 148 (222)
.|.......+..+|++++|+|+.+.... ....++..+.. .++|.+ +++||+|+.+..... ..+...+....+
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 8877667778899999999999875322 22233333332 237765 579999997422211 113344444432
Q ss_pred -----CeEEEEccccCC----------CHHHHHHHHHH
Q 027503 149 -----LYFMETSAMQNL----------NVEDAFLQMIN 171 (222)
Q Consensus 149 -----~~~~~~Sa~~~~----------gi~~~~~~l~~ 171 (222)
++++++|+.+|. ++.++++.|..
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~ 200 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS 200 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence 679999999985 45555555544
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=5.8e-16 Score=131.31 Aligned_cols=158 Identities=18% Similarity=0.124 Sum_probs=99.8
Q ss_pred CCCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------------CCCcceeeEEEEEEECCeEEEEEEE
Q 027503 1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS--------------KPTIGVEFAYRNIRVGDKLIKAQIW 66 (222)
Q Consensus 1 ~~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~ 66 (222)
|++--.+.....++|+++|++++|||||+++|++....... ....+.+.......+......+.|+
T Consensus 1 ~~~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~i 80 (409)
T CHL00071 1 MAREKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV 80 (409)
T ss_pred CchhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEE
Confidence 33323344566799999999999999999999864211000 0112233333333343344578899
Q ss_pred eCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHH
Q 027503 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVNE---EEGKI 142 (222)
Q Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~ 142 (222)
||||+..|.......+..+|++++|+|+..+..-. ....+..+... ++| +++++||+|+.+...... .+...
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~ 156 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRE 156 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 99999888776777788999999999998753322 22233333332 377 668899999975322111 12333
Q ss_pred HHHHcC-----CeEEEEccccCCCH
Q 027503 143 LAETEG-----LYFMETSAMQNLNV 162 (222)
Q Consensus 143 ~~~~~~-----~~~~~~Sa~~~~gi 162 (222)
+....+ ++++++|+.+|.++
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 157 LLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHhCCCCCcceEEEcchhhcccc
Confidence 333332 68999999998743
No 229
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=9.2e-16 Score=129.31 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=117.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
.+.+-|.+||+...|||||+..+-...+...-.-.++..+.-..+..+. ..-.++|+||||++.|..++..-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3567799999999999999999988776655445555555555666541 223789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEccccC
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG---------LYFMETSAMQN 159 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 159 (222)
|+|+++++.-- .+....+......++|++|++||+|..+.+ .+....-..++| ..++++||++|
T Consensus 83 ILVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg 155 (509)
T COG0532 83 ILVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG 155 (509)
T ss_pred EEEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence 99999998622 122333455556669999999999987432 222222222222 56999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 027503 160 LNVEDAFLQMINQIHQT 176 (222)
Q Consensus 160 ~gi~~~~~~l~~~i~~~ 176 (222)
+|++++++.+.-...-.
T Consensus 156 ~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 156 EGIDELLELILLLAEVL 172 (509)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999997766554433
No 230
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.69 E-value=8.1e-16 Score=121.73 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhHhhhcCC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAITSSYYRGA 85 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 85 (222)
..|.++|.|++|||||+++|....-.....+.++..-....+.+++.. .+++-|.||..+- .......+..+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence 457899999999999999999876544444555555555566665543 4899999995431 12234556789
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccC
Q 027503 86 LGALLVYDITRR---ATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQN 159 (222)
Q Consensus 86 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 159 (222)
+.++||+|++.+ ..++.++.+..++..+.+ ...|.++|+||+|+.+.. .....+++....- .++++||+++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence 999999999998 777777776666655542 558999999999985321 2223556665553 4999999999
Q ss_pred CCHHHHHHHHHH
Q 027503 160 LNVEDAFLQMIN 171 (222)
Q Consensus 160 ~gi~~~~~~l~~ 171 (222)
+|+.++++.|.+
T Consensus 353 egl~~ll~~lr~ 364 (366)
T KOG1489|consen 353 EGLEELLNGLRE 364 (366)
T ss_pred cchHHHHHHHhh
Confidence 999999877654
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=1.8e-15 Score=121.20 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCC----------C----------CcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSK----------P----------TIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~----------~----------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
-+|+|+|++|+|||||+++|+...-..... . ..+.++......++.....+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997532111100 0 01233334444455555789999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
.|.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 8887777788999999999999876432 22333333332 3589999999999864
No 232
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.68 E-value=1.3e-15 Score=117.05 Aligned_cols=158 Identities=13% Similarity=0.170 Sum_probs=95.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcce---eeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhHhhhc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAGQERFRA-----ITSSYYR 83 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~ 83 (222)
+++|+|+|.+|+|||||+|.|.+.........+.+. ......+.... ...+.+|||||...... +....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999986654322222221 11111122111 23689999999753222 2223366
Q ss_pred CCcEEEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC-------CH-HHH---HHH----HHHc
Q 027503 84 GALGALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHSREV-------NE-EEG---KIL----AETE 147 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-------~~-~~~---~~~----~~~~ 147 (222)
.+|+++++.+. + +... ..|+..+... +.|+++|+||+|+...... .. +.. +.. ....
T Consensus 80 ~~d~~l~v~~~--~--~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST--R--FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC--C--CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78988887432 2 2222 3455555554 4799999999998531110 01 111 111 1121
Q ss_pred C---CeEEEEccc--cCCCHHHHHHHHHHHHHHhh
Q 027503 148 G---LYFMETSAM--QNLNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 148 ~---~~~~~~Sa~--~~~gi~~~~~~l~~~i~~~~ 177 (222)
+ -+++.+|+. .+.|+..+.+.++..+-+.+
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 2 368999998 57899999999998887654
No 233
>PRK00049 elongation factor Tu; Reviewed
Probab=99.68 E-value=2.7e-15 Score=126.71 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=96.1
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC---C---C--------CCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFR---L---D--------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~---~---~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
++....++|+++|+.++|||||+++|++.... . . .....+.+.......+......+.++||||+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 44467899999999999999999999863110 0 0 00122333333344444444578899999998
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHc-
Q 027503 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIV-LVGNKSDLTHSREVN---EEEGKILAETE- 147 (222)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~- 147 (222)
.|.......+..+|++++|+|+..+..- ....++..+... ++|.+ +++||+|+.+..... ..+...+....
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 8877677778999999999999875332 223333434333 37876 579999986422211 11222333332
Q ss_pred ----CCeEEEEccccCC
Q 027503 148 ----GLYFMETSAMQNL 160 (222)
Q Consensus 148 ----~~~~~~~Sa~~~~ 160 (222)
+++++.+|+.+|.
T Consensus 163 ~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 163 FPGDDTPIIRGSALKAL 179 (396)
T ss_pred CCccCCcEEEeeccccc
Confidence 3689999999875
No 234
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.66 E-value=1.8e-15 Score=121.73 Aligned_cols=144 Identities=14% Similarity=0.183 Sum_probs=92.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-----
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF----- 74 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----- 74 (222)
...++|+|+|.+|+|||||+|+|++..+.... .++.........+..++..+.+.+|||||....
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 35789999999999999999999988765442 233344445556666788889999999994321
Q ss_pred --hh-------------------hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 75 --RA-------------------ITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 75 --~~-------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
.. .+...+. .+|+++++++.+... ..... +..+..... ++|+++|+||+|+..
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHhc-cCCEEEEEECCCcCC
Confidence 00 1112222 467888888876421 11110 222222222 489999999999865
Q ss_pred CCC--CCHHHHHHHHHHcCCeEEEEccc
Q 027503 132 SRE--VNEEEGKILAETEGLYFMETSAM 157 (222)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~ 157 (222)
..+ .......+.+..+++.++.....
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 222 22344556677788888876654
No 235
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=8.7e-16 Score=119.71 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=109.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYY 82 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~ 82 (222)
...++|+++|.+|+|||||+|+|++++..+...-..+.+.........+. -.+.|||+||-++ ++.+...++
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 45789999999999999999999977665554333334443333222222 4689999999543 778889999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC-------CCCCHHHHHHHHHH--------c
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS-------REVNEEEGKILAET--------E 147 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~--------~ 147 (222)
...|.++++++++++.---+...|...+. .. .+.|+++++|++|.... ...+....+++... .
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~-~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVII-LG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHHHHHHH-hc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999753223233333332 22 22789999999998643 11222222222221 1
Q ss_pred --CCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 148 --GLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 148 --~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
=-|++.++...+.|++++...++..+-
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 136888889999999999999887654
No 236
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.66 E-value=1.8e-15 Score=117.78 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=78.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CCCcceeeEEEEEEEC--------CeEEEEEEEeCC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDS----------------KPTIGVEFAYRNIRVG--------DKLIKAQIWDTA 69 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~ 69 (222)
+|+++|+.++|||||+.+|+........ ....++......+.+. +....+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6999999999999999999754311000 1111122222222332 336789999999
Q ss_pred ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
|++.|......++..+|++++|+|+.++....... .+..+. ..++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHH---HcCCCEEEEEECCCcc
Confidence 99999999999999999999999999876544322 222222 2348999999999975
No 237
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.65 E-value=2e-15 Score=127.90 Aligned_cols=147 Identities=24% Similarity=0.241 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCC---------------------------------CCCCcceeeEEEEEEECCe
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLD---------------------------------SKPTIGVEFAYRNIRVGDK 59 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 59 (222)
++|+++|+.++|||||+.+|+...-... .....+.+.....+.. .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence 5899999999999999999863221100 0111223333333333 3
Q ss_pred EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--
Q 027503 60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE-- 137 (222)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~-- 137 (222)
...+.|+||||++.|.......+..+|++++|+|+..+..-.. ...+..+.... . .+++|++||+|+.+......
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~~-~-~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLLG-I-RHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHcC-C-CcEEEEEEecccccchHHHHHH
Confidence 4578999999999887666677899999999999987642222 11122222222 1 46888999999865221111
Q ss_pred --HHHHHHHHHcC---CeEEEEccccCCCHHH
Q 027503 138 --EEGKILAETEG---LYFMETSAMQNLNVED 164 (222)
Q Consensus 138 --~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 164 (222)
++...+....+ ++++++||.+|.|+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 11222333333 5799999999999875
No 238
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.65 E-value=7.5e-16 Score=123.80 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=93.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC------------------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDS------------------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (222)
+|+|+|++|+|||||+++|+........ ....+.......+..++ ..+.+|||||...+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999753211110 00111222223344443 578999999998887
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeE--EE
Q 027503 76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYF--ME 153 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~ 153 (222)
..+..++..+|++++|+|+++.........| ..+.. .++|+++++||+|+... . ..+....+....+.++ +.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~-~-~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA-D-FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC-C-HHHHHHHHHHHhCCCeEEEE
Confidence 7888899999999999999987554433323 22332 34899999999998653 1 1233344444455443 33
Q ss_pred EccccCCCHHHHHHHH
Q 027503 154 TSAMQNLNVEDAFLQM 169 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l 169 (222)
++..++.++..+++.+
T Consensus 153 ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 153 LPIGEGDDFKGVVDLL 168 (268)
T ss_pred ecccCCCceeEEEEcc
Confidence 4455555554444333
No 239
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=9.4e-16 Score=110.33 Aligned_cols=155 Identities=19% Similarity=0.279 Sum_probs=115.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
+.-|++++|-.|+|||||++.|.+... ..+.||...+ ...+.+.+ .+|+.+|.+|+...+..|..++..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 455899999999999999999987664 3444554222 23445555 678999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH---HH---c-----------CCeEE
Q 027503 91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILA---ET---E-----------GLYFM 152 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~---~-----------~~~~~ 152 (222)
.+|+-+.+.|.+.+..++.+.... -..+|+++.+||+|....- +.++.+... .. . -+.++
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 999999999988877766654433 3459999999999986532 333322111 11 1 13578
Q ss_pred EEccccCCCHHHHHHHHHHH
Q 027503 153 ETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 153 ~~Sa~~~~gi~~~~~~l~~~ 172 (222)
.||...+.|..+.|.|+...
T Consensus 172 mcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEccCccceeeeehhhh
Confidence 89999999988888877543
No 240
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.65 E-value=6.4e-15 Score=125.81 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=100.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC--------------C------------CC---CCCcceeeEEEEEEECCeE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR--------------L------------DS---KPTIGVEFAYRNIRVGDKL 60 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~--------------~------------~~---~~~~~~~~~~~~~~~~~~~ 60 (222)
...++|+++|+.++|||||+.+|+...-. . .. ....+.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 45689999999999999999988632110 0 00 0112233333344455555
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFE-------NTKKWLRELREFCSSCMA-IVLVGNKSDLTHS 132 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~ 132 (222)
..+.++|+||++.|.......+..+|++|+|+|+++. .|+ .....+..+... ++| ++|++||+|+.+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCch
Confidence 7899999999999998889999999999999999873 222 223322222222 364 6788999998621
Q ss_pred CCCC-------HHHHHHHHHHcC-----CeEEEEccccCCCHHH
Q 027503 133 REVN-------EEEGKILAETEG-----LYFMETSAMQNLNVED 164 (222)
Q Consensus 133 ~~~~-------~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 164 (222)
.+. .++...+....+ ++|+++|+.+|+|+.+
T Consensus 161 -~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 -KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred -hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 111 234455555555 6799999999999854
No 241
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.65 E-value=6.2e-15 Score=127.99 Aligned_cols=120 Identities=19% Similarity=0.152 Sum_probs=82.1
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------C----------CCCcceeeEEEEEEECCeEEEEEEEe
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD----------S----------KPTIGVEFAYRNIRVGDKLIKAQIWD 67 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~----------~----------~~~~~~~~~~~~~~~~~~~~~~~l~D 67 (222)
+-+...+|+|+|++++|||||+++|+...-... . ....+.++......+......+.+||
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 345677999999999999999999973111000 0 00112333333334444457899999
Q ss_pred CCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|||+..|......++..+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 999998888778889999999999999875322 22334333332 3589999999999753
No 242
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.65 E-value=4.2e-15 Score=119.17 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=78.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCC------------------CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFR------------------LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (222)
+|+++|++++|||||+++|+...-. .......+.+.....+...+ ..+.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 5899999999999999999742110 11122223333334444444 678999999998888
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
..+...++.+|++++|+|+.+...-.. ...+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888999999999999999987643222 223333333 3489999999999864
No 243
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.64 E-value=9.5e-15 Score=102.66 Aligned_cols=106 Identities=26% Similarity=0.326 Sum_probs=71.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhhhc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER---------FRAITSSYYR 83 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~ 83 (222)
+|+|+|.+|+|||||+|+|++... .....+..+.......+..++. .+.++||||... ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999998543 2333344444445556666764 457999999532 1112334448
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeC
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 126 (222)
.+|++++|+|.+++.. +....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999887432 22233334442 45899999998
No 244
>PLN03126 Elongation factor Tu; Provisional
Probab=99.64 E-value=1.1e-14 Score=125.01 Aligned_cols=147 Identities=18% Similarity=0.107 Sum_probs=95.6
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcC----------------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF----------------RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
....++|+++|++++|||||+++|+.... ........+.+.....+.. ....+.++|+||++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec--CCcEEEEEECCCHH
Confidence 34578999999999999999999985211 1111222233333333333 33578999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHHHHHHc-
Q 027503 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREVNE---EEGKILAETE- 147 (222)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~- 147 (222)
.|.......+..+|++++|+|+.++..-. ...++..+... ++| +++++||+|+.+...... .+...+....
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 98777777788999999999998764322 23344444333 377 678899999875222111 1223333332
Q ss_pred ----CCeEEEEccccCCC
Q 027503 148 ----GLYFMETSAMQNLN 161 (222)
Q Consensus 148 ----~~~~~~~Sa~~~~g 161 (222)
+++++.+|+.+|.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 46899999998853
No 245
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.64 E-value=3.8e-15 Score=128.14 Aligned_cols=151 Identities=23% Similarity=0.223 Sum_probs=95.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC---------------------------------CCCcceeeEEEEEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS---------------------------------KPTIGVEFAYRNIRV 56 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 56 (222)
...++|+++|+.++|||||+.+|+...-.... ....+++.....+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~-- 102 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF-- 102 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe--
Confidence 45799999999999999999998743211000 1112233333333
Q ss_pred CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC
Q 027503 57 GDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN 136 (222)
Q Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (222)
......+.|+||||++.|.......+..+|++++|+|++.+..-.. ...+..+.... . .|++|++||+|+.+.....
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg-~-~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG-I-KHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC-C-CceEEEEEeeccccchhHH
Confidence 3334578999999998886655666799999999999987532111 11112222222 1 4788899999987422211
Q ss_pred HHH----HHHHHHHc----CCeEEEEccccCCCHHHH
Q 027503 137 EEE----GKILAETE----GLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 137 ~~~----~~~~~~~~----~~~~~~~Sa~~~~gi~~~ 165 (222)
.+. ...+.... ..+++++||++|.|+.+.
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 111 11222222 367999999999999764
No 246
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.63 E-value=1.9e-14 Score=110.40 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCC--CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------h---hhH
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDS--KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--------A---ITS 79 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~---~~~ 79 (222)
++|+|+|.+|||||||+|.+++....... .+..+..........++ ..+.++||||..... . ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987654333 22333444444444554 478999999954321 1 112
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCC------HHHHHHHHHHcCCeE
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVN------EEEGKILAETEGLYF 151 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~ 151 (222)
....++|++++|+++++ .+-.+ ...+..+....+ .-.++++|+|+.|......+. ....+......+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999987 33222 223333433322 114788899999976433211 123344445555555
Q ss_pred EEEcc-----ccCCCHHHHHHHHHHHHHH
Q 027503 152 METSA-----MQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 152 ~~~Sa-----~~~~gi~~~~~~l~~~i~~ 175 (222)
+..+. ..+.++.++++.+.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 55553 4566777777766666554
No 247
>PRK13351 elongation factor G; Reviewed
Probab=99.63 E-value=6.4e-15 Score=132.59 Aligned_cols=120 Identities=17% Similarity=0.159 Sum_probs=83.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCC--------CC-----CCC---CcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFR--------LD-----SKP---TIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~--------~~-----~~~---~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (222)
+.+...+|+|+|+.++|||||+++|+...-. .. +.+ ..+.+.......+......+.+|||||+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 4456789999999999999999999853210 00 000 0111222222223333468999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
..+...+..+++.+|++++|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 99888899999999999999999987665554434 33332 3589999999999864
No 248
>PLN03127 Elongation factor Tu; Provisional
Probab=99.63 E-value=1.5e-14 Score=123.53 Aligned_cols=156 Identities=17% Similarity=0.106 Sum_probs=95.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC------cC----------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD------EF----------RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (222)
...++|+++|+.++|||||+++|.+. .. .+...+..+.+ .....++.....+.++||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccc
Confidence 45789999999999999999999632 10 01112333333 33444444446789999999988
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeE-EEEEeCCCCCCCCCCCHH---HHHHHHHHc--
Q 027503 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI-VLVGNKSDLTHSREVNEE---EGKILAETE-- 147 (222)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~---~~~~~~~~~-- 147 (222)
|.......+..+|++++|+|++++..-+ ....+..+... ++|. ++++||+|+.+....... +...+....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7666666667899999999998753222 22233333333 3784 678999999753221111 112222221
Q ss_pred ---CCeEEEEccc---cCCC-------HHHHHHHHHH
Q 027503 148 ---GLYFMETSAM---QNLN-------VEDAFLQMIN 171 (222)
Q Consensus 148 ---~~~~~~~Sa~---~~~g-------i~~~~~~l~~ 171 (222)
.++++.+|+. +|.| +.++++.+..
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~ 249 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE 249 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence 3678888876 4544 4555555444
No 249
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=115.09 Aligned_cols=163 Identities=20% Similarity=0.176 Sum_probs=118.0
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhh
Q 027503 5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAI 77 (222)
Q Consensus 5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~ 77 (222)
|+-.++....++++|.|++|||||++.|.+........+..+.+.....+.+.+ ..+++.|+||.-.- ...
T Consensus 56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~ 133 (365)
T COG1163 56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQ 133 (365)
T ss_pred ceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcce
Confidence 445677889999999999999999999999876666667777777777777777 78899999984321 234
Q ss_pred hHhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHH-----------------------------------------HHHc-
Q 027503 78 TSSYYRGALGALLVYDITRRAT-FENTKKWLREL-----------------------------------------REFC- 114 (222)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l-----------------------------------------~~~~- 114 (222)
.....++||++++|+|+....+ .+-+...+... .++.
T Consensus 134 vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I 213 (365)
T COG1163 134 VLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRI 213 (365)
T ss_pred eeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCc
Confidence 5677899999999999996654 33333322221 0000
Q ss_pred ---------------------C--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 115 ---------------------S--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 115 ---------------------~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
. .=+|.++|.||+|+.. .++...+.+.. .++.+||..+.|++++.+.|-+
T Consensus 214 ~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 214 HNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred ccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHH
Confidence 0 0159999999999865 23333444333 7899999999999999988887
Q ss_pred HHHHh
Q 027503 172 QIHQT 176 (222)
Q Consensus 172 ~i~~~ 176 (222)
.+.-.
T Consensus 287 ~L~li 291 (365)
T COG1163 287 VLGLI 291 (365)
T ss_pred hhCeE
Confidence 76543
No 250
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.63 E-value=5.4e-15 Score=115.25 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=100.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhHhhhcCCcE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-----ITSSYYRGALG 87 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~ 87 (222)
||+++|+.+|||||+.+.++++-.+... .-..+.+.....+...+. +.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999999999876543222 112233444445544332 5899999999875443 45778899999
Q ss_pred EEEEEeCCChhhHHHHH---HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--C----HHHHHHHHHHcC---CeEEEEc
Q 027503 88 ALLVYDITRRATFENTK---KWLRELREFCSSCMAIVLVGNKSDLTHSREV--N----EEEGKILAETEG---LYFMETS 155 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~---~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~----~~~~~~~~~~~~---~~~~~~S 155 (222)
+|+|+|+.+.+-.+++. ..+..+.++.+ ++.+.|+++|+|+..+... . .+.....+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999999544334444 34444555554 4889999999998642111 0 111222233444 7899999
Q ss_pred cccCCCHHHHHHHHHHHHHHh
Q 027503 156 AMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 156 a~~~~gi~~~~~~l~~~i~~~ 176 (222)
..+. .+-+.|..+++.+...
T Consensus 159 I~D~-Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 159 IWDE-SLYEAWSKIVQKLIPN 178 (232)
T ss_dssp TTST-HHHHHHHHHHHTTSTT
T ss_pred CcCc-HHHHHHHHHHHHHccc
Confidence 9994 7889998888887754
No 251
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.62 E-value=1.1e-14 Score=124.45 Aligned_cols=151 Identities=17% Similarity=0.080 Sum_probs=96.6
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcC--C-----------------------------CCCCCCcceeeEEEEEEEC
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF--R-----------------------------LDSKPTIGVEFAYRNIRVG 57 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 57 (222)
....++|+++|+.++|||||+.+|+...- . ..... +.+.......+.
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~r--GiTid~~~~~~~ 81 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER--GITIDIALWKFE 81 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhc--CEeEEeeeEEEc
Confidence 35678999999999999999999875210 0 00112 223333333444
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHHcCCCCe-EEEEEeCCCCC
Q 027503 58 DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRAT---F---ENTKKWLRELREFCSSCMA-IVLVGNKSDLT 130 (222)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~ 130 (222)
.....+.|+|+||+..|.......+..+|++++|+|++.+.- + ......+..+... ++| ++|++||+|..
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDK 158 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccc
Confidence 455788999999999998878888899999999999987531 1 1222223333333 365 56899999953
Q ss_pred C--CCCCCH----HHHHHHHHHc-----CCeEEEEccccCCCHHH
Q 027503 131 H--SREVNE----EEGKILAETE-----GLYFMETSAMQNLNVED 164 (222)
Q Consensus 131 ~--~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~ 164 (222)
. ...-.. .+...+.... .++++++|+.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2 111111 1222222222 36799999999999864
No 252
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.3e-14 Score=116.20 Aligned_cols=164 Identities=21% Similarity=0.179 Sum_probs=113.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhhcCCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYYRGAL 86 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d 86 (222)
-|.++|.|++|||||++.+....--....|.++..-....+... ....|.+-|.||.-+ ...-....+.++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 47799999999999999999876544444555555555555552 234689999999542 1122345567889
Q ss_pred EEEEEEeCCChh---hHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE-EccccCC
Q 027503 87 GALLVYDITRRA---TFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFME-TSAMQNL 160 (222)
Q Consensus 87 ~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~ 160 (222)
+++.|+|++..+ ..++......++..+.. ...|.+||+||+|+....+...+....+....+...+. +|+.+++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999998644 34555555566655542 45899999999997654443344455555555544222 9999999
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 027503 161 NVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 161 gi~~~~~~l~~~i~~~~~ 178 (222)
|++++...+.+.+.+...
T Consensus 320 g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 320 GLDELLRALAELLEETKA 337 (369)
T ss_pred CHHHHHHHHHHHHHHhhh
Confidence 999999888888777653
No 253
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.62 E-value=1.7e-14 Score=117.83 Aligned_cols=81 Identities=15% Similarity=0.225 Sum_probs=55.6
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEE---------------------ECC-eEEEEEEEeCCCh-
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR---------------------VGD-KLIKAQIWDTAGQ- 71 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~l~Dt~G~- 71 (222)
|+++|.++||||||+++|.+........|..+.+....... .++ ..+.+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999998875433333333332222111 122 3467999999997
Q ss_pred ---hhhhhhhHh---hhcCCcEEEEEEeCC
Q 027503 72 ---ERFRAITSS---YYRGALGALLVYDIT 95 (222)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 95 (222)
++...+... .++.+|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334444334 589999999999997
No 254
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.62 E-value=8.9e-15 Score=124.79 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=103.3
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcC---CCCCCCCcceeeEEEEE---------------EECC-----------
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEF---RLDSKPTIGVEFAYRNI---------------RVGD----------- 58 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~----------- 58 (222)
.....++|+++|+...|||||+.+|.+... ........+.+..+... ....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 346788999999999999999999986432 11112222222111110 0000
Q ss_pred -----eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503 59 -----KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133 (222)
Q Consensus 59 -----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 133 (222)
....+.|+|+||++.|-......+..+|++++|+|++++.........+..+... .. .|++||+||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi-~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KL-KHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CC-CcEEEEEecccccCHH
Confidence 0236899999999988777777788999999999999742111222222222222 22 4688999999997532
Q ss_pred CCC--HHHHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 134 EVN--EEEGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 134 ~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
... .++.+.+... .+.+++++||.+|.|++++++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 211 1122222222 357899999999999999998887644
No 255
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.9e-14 Score=120.10 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=117.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
++++-|-|+|+..-|||||+..|-+..+...-.-.++..+.-..+.+... ..++|.||||+..|..|+..-..-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 46788999999999999999999887765443344444443334444422 57899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH------HcC--CeEEEEccccCCC
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE------TEG--LYFMETSAMQNLN 161 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~~~g 161 (222)
+|+.++|+-- .+..+.|......++|++|.+||+|.++.. +....+++.. .+| +.++++||++|.|
T Consensus 230 LVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 230 LVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 9999998632 223444666666779999999999976432 2222333322 233 6799999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027503 162 VEDAFLQMINQIHQT 176 (222)
Q Consensus 162 i~~~~~~l~~~i~~~ 176 (222)
++.+-+.+.-...-+
T Consensus 304 l~~L~eaill~Ae~m 318 (683)
T KOG1145|consen 304 LDLLEEAILLLAEVM 318 (683)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999887776655433
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.60 E-value=1.8e-14 Score=128.45 Aligned_cols=151 Identities=22% Similarity=0.216 Sum_probs=94.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC---------------------------------CCCcceeeEEEEEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS---------------------------------KPTIGVEFAYRNIR 55 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 55 (222)
....++|+++|++++|||||+++|+...-.... ....+.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345689999999999999999999864321110 01122222223333
Q ss_pred ECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503 56 VGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 56 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (222)
.+ ...+.|+||||++.|.......+..+|++++|+|++.+..-.. ...+..+.... . .|++|++||+|+.+....
T Consensus 101 ~~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~-~-~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 101 TP--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG-I-RHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cC--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC-C-CeEEEEEEecccccchhH
Confidence 33 3578899999998876656667889999999999987532221 12222222222 1 578889999998642211
Q ss_pred CHH----HHHHHHHHcC---CeEEEEccccCCCHHH
Q 027503 136 NEE----EGKILAETEG---LYFMETSAMQNLNVED 164 (222)
Q Consensus 136 ~~~----~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 164 (222)
..+ +...+....+ ++++++||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 1222333444 4699999999999874
No 257
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=8.4e-14 Score=125.24 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=83.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC------------------CCCCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRL------------------DSKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (222)
+.+...+|+|+|++++|||||+++|+...-.. ...+..+.+.....+..++ ..+.++|||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTP 81 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTP 81 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCC
Confidence 34567899999999999999999997421100 0122334444444455544 678999999
Q ss_pred ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|+..+...+...+..+|++++|+|+.++...... ..+..+.. .++|+++++||+|+..
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9988888888899999999999999886543332 22233333 3489999999999864
No 258
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.7e-14 Score=120.27 Aligned_cols=171 Identities=22% Similarity=0.215 Sum_probs=112.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hh----h----hhH
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-FR----A----ITS 79 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~----~----~~~ 79 (222)
...++|+|+|.||+|||||+|.|...+..... .+..+.+.-...++++| +.+.|.||+|..+ -. . -..
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 34589999999999999999999988765443 45555566666677777 6789999999654 11 1 123
Q ss_pred hhhcCCcEEEEEEeCCChhhH--HHHHHHHHHHHH------HcCCCCeEEEEEeCCCCCCC-CCCCHHHHHHHHHHc---
Q 027503 80 SYYRGALGALLVYDITRRATF--ENTKKWLRELRE------FCSSCMAIVLVGNKSDLTHS-REVNEEEGKILAETE--- 147 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~------~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~--- 147 (222)
..+..+|++++|+|+.....- ..+...+..... ......|++++.||+|+... ....... ..+....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCc
Confidence 457799999999999543222 222223332211 11244789999999999764 1221111 1111111
Q ss_pred CCe-EEEEccccCCCHHHHHHHHHHHHHHhhhhhhhh
Q 027503 148 GLY-FMETSAMQNLNVEDAFLQMINQIHQTTIQKSLC 183 (222)
Q Consensus 148 ~~~-~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~ 183 (222)
..+ ..++|+++++|+.++.+.+...+..........
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~ 459 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSA 459 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 134 455999999999999999999888777644443
No 259
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=4.3e-14 Score=119.07 Aligned_cols=159 Identities=21% Similarity=0.220 Sum_probs=112.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcC--C-------------CCCCCCcceeeEEEE-EEECCeEEEEEEEeCCChhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEF--R-------------LDSKPTIGVEFAYRN-IRVGDKLIKAQIWDTAGQER 73 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~--~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~ 73 (222)
+..-++.|+-+..-|||||..+|+...- + ......+++...... +..++....+.++||||+..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5667899999999999999999874221 1 111222333322222 22246668899999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH---HHHHHHcCCe
Q 027503 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG---KILAETEGLY 150 (222)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~ 150 (222)
|..-...-+..++++|+|+|+..+..-+.+..++..+. .+..+|.|+||+|+...+. +... .........+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adp--e~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADP--ERVENQLFELFDIPPAE 211 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCH--HHHHHHHHHHhcCCccc
Confidence 99888889999999999999998765555544444333 2367899999999976432 2222 2333334457
Q ss_pred EEEEccccCCCHHHHHHHHHHHHH
Q 027503 151 FMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 151 ~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
.+.+||++|.|+.++++++++++=
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhCC
Confidence 999999999999999999988763
No 260
>PRK09866 hypothetical protein; Provisional
Probab=99.56 E-value=3.1e-13 Score=117.02 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=73.2
Q ss_pred EEEEEeCCChhh-----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC
Q 027503 62 KAQIWDTAGQER-----FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN 136 (222)
Q Consensus 62 ~~~l~Dt~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (222)
.+.|+||||... ........+..+|++++|+|+....+..+ ......+....+ ..|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K-~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ-SVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC-CCCEEEEEEcccCCCcccch
Confidence 578999999653 23334457999999999999987544433 223344443322 25999999999986433322
Q ss_pred HHHHHHHHH----HcC---CeEEEEccccCCCHHHHHHHHHH
Q 027503 137 EEEGKILAE----TEG---LYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 137 ~~~~~~~~~----~~~---~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
.+....+.. ..+ ..++++||+.|.|+.++++.+..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 344444432 112 35999999999999999988876
No 261
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.55 E-value=4.8e-14 Score=117.66 Aligned_cols=171 Identities=15% Similarity=0.183 Sum_probs=129.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-----hh----hhhHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-----FR----AITSSY 81 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~~----~~~~~~ 81 (222)
..-.++|+|.|++|||||+|.+..........++++...+..++.+.. ..++++||||.-. .+ ......
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 445689999999999999999998887777667776666666666543 6889999999321 11 111223
Q ss_pred hcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH---HHHHHcCCeEEEEcc
Q 027503 82 YRGALGALLVYDITR--RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK---ILAETEGLYFMETSA 156 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~Sa 156 (222)
.+--.+|+|+.|++. +.|..+-..+++.+...... .|+|+|+||+|+.....++.+... .....-+++++++|+
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN-K~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN-KVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC-CceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 333456788888875 56777777788888888766 799999999999887777665533 334445589999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhhhhhhhhh
Q 027503 157 MQNLNVEDAFLQMINQIHQTTIQKSLCA 184 (222)
Q Consensus 157 ~~~~gi~~~~~~l~~~i~~~~~~~~~~~ 184 (222)
.+.+|+.++-...+++++..+......+
T Consensus 324 ~~eegVm~Vrt~ACe~LLa~RVE~Klks 351 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALLAARVEQKLKS 351 (620)
T ss_pred cchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999887766654
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.54 E-value=2.4e-13 Score=122.33 Aligned_cols=118 Identities=18% Similarity=0.104 Sum_probs=83.7
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-----CC-------------CCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRL-----DS-------------KPTIGVEFAYRNIRVGDKLIKAQIWDTA 69 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (222)
+.+...+|+|+|++++|||||+++|+...-.. .. ....+.+.....+..++ ..+.+||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTP 83 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTP 83 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECC
Confidence 44567799999999999999999997422110 00 12233333344444444 688999999
Q ss_pred ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|+..+...+...+..+|++++|+|+.++....... ++..+.. .++|+++++||+|+..
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 99888778888999999999999999865544333 3333333 3489999999999875
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.54 E-value=1.3e-14 Score=108.56 Aligned_cols=116 Identities=21% Similarity=0.315 Sum_probs=71.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHh---hhcCCcE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRV-GDKLIKAQIWDTAGQERFRAITSS---YYRGALG 87 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~ 87 (222)
.-.|+|+|+.|||||+|+..|..+....+... ...+. .+.+ ......+.++|+||+.+.+..... ++..+-+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS-~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS-MENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B----SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc-ccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 45699999999999999999999855333211 11111 1111 223347899999999987653333 4889999
Q ss_pred EEEEEeCCC-hhhHHHHHHHHHHH-HHH--cCCCCeEEEEEeCCCCCC
Q 027503 88 ALLVYDITR-RATFENTKKWLREL-REF--CSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 88 ~i~v~d~~~-~~s~~~~~~~~~~l-~~~--~~~~~p~ivv~nK~Dl~~ 131 (222)
+|||+|.+. .....++..++..+ ... ...++|++|+.||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999999974 33455555544443 222 246799999999999864
No 264
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.54 E-value=1.5e-13 Score=119.46 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=83.6
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------------------CCCcceeeEEEEEEECCeEEEEEEE
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS--------------------KPTIGVEFAYRNIRVGDKLIKAQIW 66 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~ 66 (222)
.+.....+|+|+|++++|||||+++|+...-.... ....+.++......++.....+.+|
T Consensus 6 ~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inli 85 (527)
T TIGR00503 6 KEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLL 85 (527)
T ss_pred hhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEE
Confidence 34456789999999999999999998631110000 0112334444444555555789999
Q ss_pred eCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
||||+..|.......+..+|++|+|+|+.+... .....++..+.. .++|+++++||+|+..
T Consensus 86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 999998887777778899999999999987522 223344443332 3489999999999854
No 265
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.52 E-value=6e-13 Score=111.92 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEE---------------------EC-CeEEEEEEEeCCC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR---------------------VG-DKLIKAQIWDTAG 70 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~l~Dt~G 70 (222)
++|+|+|.|+||||||+|+|.+........+..+.+....... .+ .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998876543334443333322211 11 2236789999999
Q ss_pred hh----hhhhhhHhh---hcCCcEEEEEEeCC
Q 027503 71 QE----RFRAITSSY---YRGALGALLVYDIT 95 (222)
Q Consensus 71 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 95 (222)
.. ....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 43 223333344 88999999999996
No 266
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=4.5e-13 Score=111.39 Aligned_cols=160 Identities=20% Similarity=0.217 Sum_probs=115.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcC---------------CCCCCCCcceeeEEEEEEE---CCeEEEEEEEeCCC
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF---------------RLDSKPTIGVEFAYRNIRV---GDKLIKAQIWDTAG 70 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G 70 (222)
....-+..++-+-.-|||||..+|+...- .......+++......+.+ +|..+.+.++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 34556789999999999999999874321 1111233333333322222 45778999999999
Q ss_pred hhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027503 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY 150 (222)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (222)
+..|.--....+..+.+.++|+|++.+-..+.+...+..+.. +.-++-|+||+||+... ......+...-.|++
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad--pervk~eIe~~iGid 159 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD--PERVKQEIEDIIGID 159 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC--HHHHHHHHHHHhCCC
Confidence 998887777888889999999999987655565555554443 36678889999997533 345566667777764
Q ss_pred ---EEEEccccCCCHHHHHHHHHHHHH
Q 027503 151 ---FMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 151 ---~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
.+.+||++|.||.++++.+++++=
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCC
Confidence 789999999999999999988753
No 267
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.49 E-value=1.5e-13 Score=94.63 Aligned_cols=136 Identities=21% Similarity=0.199 Sum_probs=95.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----hhhhhhHhhhcCCcEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----RFRAITSSYYRGALGAL 89 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i 89 (222)
||+++|..|+|||||.+.|.+... .+..|..++ +++. -.+||||.- .+.........++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999987653 223333222 2221 268999943 22223445567899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 168 (222)
+|-+++++++-... .+.... ..|+|-|++|+|+.+.. ..+..+.|..+-|. ++|++|+.++.|+.++++.
T Consensus 70 ~v~~and~~s~f~p-----~f~~~~--~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFPP-----GFLDIG--VKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCCc-----cccccc--ccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999998653221 111111 15689999999998633 34667788888885 5999999999999999988
Q ss_pred HHH
Q 027503 169 MIN 171 (222)
Q Consensus 169 l~~ 171 (222)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 764
No 268
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=3.4e-13 Score=110.69 Aligned_cols=154 Identities=22% Similarity=0.195 Sum_probs=101.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc--CC---------------CC------------CCCCcceeeEEEEEEECCeE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDE--FR---------------LD------------SKPTIGVEFAYRNIRVGDKL 60 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~--~~---------------~~------------~~~~~~~~~~~~~~~~~~~~ 60 (222)
...++++++|+..+|||||+-+|+-.. ++ .. -....+.+.......++...
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 356899999999999999999986311 00 00 01123455555556666666
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hH--HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TF--ENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (222)
..|+|+|+||+..|-.....-...||+.|+|+|+.+.+ .| ....+....+.+...- ..++|++||+|..+.++-
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi-~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI-KQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC-ceEEEEEEcccccccCHH
Confidence 78999999999888887888888999999999999874 11 1112222333333332 457888999999873332
Q ss_pred CHHHHH----HHHHHcC-----CeEEEEccccCCCHHH
Q 027503 136 NEEEGK----ILAETEG-----LYFMETSAMQNLNVED 164 (222)
Q Consensus 136 ~~~~~~----~~~~~~~-----~~~~~~Sa~~~~gi~~ 164 (222)
..++.. .+....| ++|+++|+..|.|+.+
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 222221 2333333 6799999999999765
No 269
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.48 E-value=2.8e-12 Score=102.19 Aligned_cols=162 Identities=19% Similarity=0.313 Sum_probs=119.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe--EEEEEEEeCCChhhhhhhhHhhhcCC----
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK--LIKAQIWDTAGQERFRAITSSYYRGA---- 85 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~---- 85 (222)
.-+|+++|+.++|||||+.+|-+.+ ...+..+.++.+.++..++. ..++.+|-..|.-.+..+....+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 4579999999999999999998765 45566667776665554332 34677888888766666655555433
Q ss_pred cEEEEEEeCCChh-hHHHHHHHHHHHHHH---------------------------------------------------
Q 027503 86 LGALLVYDITRRA-TFENTKKWLRELREF--------------------------------------------------- 113 (222)
Q Consensus 86 d~~i~v~d~~~~~-s~~~~~~~~~~l~~~--------------------------------------------------- 113 (222)
-.+|++.|+++|. -++.+..|...+.++
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 3688899999995 446678887766441
Q ss_pred ----------cCCCCeEEEEEeCCCCC----CCCCCCH-------HHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 114 ----------CSSCMAIVLVGNKSDLT----HSREVNE-------EEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 114 ----------~~~~~p~ivv~nK~Dl~----~~~~~~~-------~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
...++|++||.+|+|.. .+.++.+ ...+.|+..+|..++.+|++...+++-+..+|+++
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 11368999999999983 2222222 23578888999999999999999999999999999
Q ss_pred HHHh
Q 027503 173 IHQT 176 (222)
Q Consensus 173 i~~~ 176 (222)
.+..
T Consensus 289 ~yG~ 292 (473)
T KOG3905|consen 289 SYGF 292 (473)
T ss_pred hcCc
Confidence 8754
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.48 E-value=1.6e-12 Score=116.95 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=75.4
Q ss_pred EcCCCCChHHHHHHHhhCcCCCC------------------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027503 18 IGDSAVGKSNLLSRFARDEFRLD------------------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITS 79 (222)
Q Consensus 18 lG~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 79 (222)
+|++++|||||+++|+...-... .....++......+...+ ..+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 69999999999999964321100 012223333334444444 6899999999988877788
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
..+..+|++++|+|++..........| ..+.. .++|+++|+||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 889999999999999987655443333 23322 3589999999999863
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.47 E-value=1.1e-12 Score=118.15 Aligned_cols=144 Identities=16% Similarity=0.074 Sum_probs=92.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcC--CC---C-------------CCCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEF--RL---D-------------SKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~--~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (222)
+.+...+|+|+|++++|||||+++|+...- .. . ..+..+.+.....+...+ ..+.++|||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTP 83 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTP 83 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCC
Confidence 455678999999999999999999974111 00 0 122233333334444444 688999999
Q ss_pred ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027503 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL 149 (222)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (222)
|+..+.......+..+|++++|+|+..+....... .+..+.. .++|.++++||+|+.+.. .......+....+.
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~ 157 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGA 157 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCC
Confidence 98887766777889999999999998764434322 2233333 348899999999987533 22233333333332
Q ss_pred ----eEEEEccccC
Q 027503 150 ----YFMETSAMQN 159 (222)
Q Consensus 150 ----~~~~~Sa~~~ 159 (222)
..+++|+..+
T Consensus 158 ~~~~~~ipisa~~~ 171 (693)
T PRK00007 158 NPVPIQLPIGAEDD 171 (693)
T ss_pred CeeeEEecCccCCc
Confidence 2455555544
No 272
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.44 E-value=1.8e-12 Score=100.68 Aligned_cols=161 Identities=19% Similarity=0.170 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCC--CCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhh---H
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSK--PTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF--------RAIT---S 79 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~---~ 79 (222)
++|+|+|.+||||||++|.+++........ ...+..........++ ..+.++||||.... ..+. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987654432 2333444455556777 56799999993211 1111 1
Q ss_pred hhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH-------HHHHHHHHHcCCe
Q 027503 80 SYYRGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE-------EEGKILAETEGLY 150 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~-------~~~~~~~~~~~~~ 150 (222)
...++.|++++|+.++ ..+..+ +..++..+....-. ..++||.|..|......+.. ...+.+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~-k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIW-KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGG-GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHH-hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 2346789999999998 333222 22233322221112 35788889888655433211 1234455556667
Q ss_pred EEEEccc------cCCCHHHHHHHHHHHHHHhh
Q 027503 151 FMETSAM------QNLNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 151 ~~~~Sa~------~~~gi~~~~~~l~~~i~~~~ 177 (222)
|+..+.+ ....+.++++.+-+.+.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8777766 33456777766666555543
No 273
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.44 E-value=8.7e-13 Score=102.81 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=95.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEE--------EEEEE-----------------------
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAY--------RNIRV----------------------- 56 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--------~~~~~----------------------- 56 (222)
...+++-|+++|..|||||||+++|..........|.. ++... .++++
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYv-iNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYV-INLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeE-EeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 34567889999999999999999997644322221110 00000 00000
Q ss_pred ------------------CCeEEEEEEEeCCChhhh------hhhhHhhhcCC--cEEEEEEeCCC---hhhHHHHHHHH
Q 027503 57 ------------------GDKLIKAQIWDTAGQERF------RAITSSYYRGA--LGALLVYDITR---RATFENTKKWL 107 (222)
Q Consensus 57 ------------------~~~~~~~~l~Dt~G~~~~------~~~~~~~~~~~--d~~i~v~d~~~---~~s~~~~~~~~ 107 (222)
....+...++||||+.+. ..+....+... -++++++|... +.+|-. ..+
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS--NMl 171 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS--NML 171 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH--HHH
Confidence 022256789999997642 22333444433 45556666432 333322 112
Q ss_pred HHHHHHcCCCCeEEEEEeCCCCCCCC----CCCHHHHHHHHHH----------------------cCCeEEEEccccCCC
Q 027503 108 RELREFCSSCMAIVLVGNKSDLTHSR----EVNEEEGKILAET----------------------EGLYFMETSAMQNLN 161 (222)
Q Consensus 108 ~~l~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~----------------------~~~~~~~~Sa~~~~g 161 (222)
....-....+.|+|++.||+|+.+.. .+.+.+..+-+.. .++..+-+|+.+|.|
T Consensus 172 YAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 172 YACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 22222234459999999999997631 1222221111111 236788999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 027503 162 VEDAFLQMINQIHQTTI 178 (222)
Q Consensus 162 i~~~~~~l~~~i~~~~~ 178 (222)
.+++|..+-+.+.+...
T Consensus 252 ~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 252 FDDFFTAVDESVDEYEE 268 (366)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988887766543
No 274
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.43 E-value=3e-12 Score=101.40 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=74.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--h--------
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--A-------- 76 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~-------- 76 (222)
.-...++|+|+|.+|||||||+|+|++....... ....+..........++ ..+.+|||||..... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 4467899999999999999999999997654332 22223333333344444 578999999965331 0
Q ss_pred hhHhhhc--CCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCCCC
Q 027503 77 ITSSYYR--GALGALLVYDITRRA-TFENTKKWLRELREFCSSC--MAIVLVGNKSDLTH 131 (222)
Q Consensus 77 ~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~Dl~~ 131 (222)
....++. ..|++++|..++... ...+ ...++.+....+.. .++++|.||+|...
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 1222333 578888888776532 2222 22333343332211 46899999999864
No 275
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.43 E-value=7.5e-12 Score=102.76 Aligned_cols=118 Identities=18% Similarity=0.193 Sum_probs=84.1
Q ss_pred EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCC
Q 027503 60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRR----------ATFENTKKWLRELREFC-SSCMAIVLVGNKSD 128 (222)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D 128 (222)
.+.+.+||++|+...+..|..++.+++++|+|+|+++- ..+.+....+..+.... -.+.|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46789999999999999999999999999999999873 23333333333332222 24589999999999
Q ss_pred CCCC---------------C-CCCHHHHHHHHHH----------cCCeEEEEccccCCCHHHHHHHHHHHHHHhh
Q 027503 129 LTHS---------------R-EVNEEEGKILAET----------EGLYFMETSAMQNLNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 129 l~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~ 177 (222)
+..+ . ..+.+.+..+... +.+..+.++|.+..+++.+|+.+.+.+....
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 6421 1 2234444444322 2356778999999999999999888887654
No 276
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.43 E-value=8e-13 Score=119.34 Aligned_cols=120 Identities=16% Similarity=0.093 Sum_probs=81.3
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCc---------------CCCC---CCCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDE---------------FRLD---SKPTIGVEFAYRNIRVGDKLIKAQIWDTA 69 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (222)
+.+...+|+|+|+.++|||||+++|+... +... +..|.........+.+++....+.+||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 34567899999999999999999997521 1000 01111111222223456666889999999
Q ss_pred ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|+..|.......+..+|++++|+|+.++........|. .+. ..+.|.++++||+|...
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEEChhccc
Confidence 99988888888999999999999998753323222222 222 23478889999999853
No 277
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.42 E-value=8.7e-12 Score=100.53 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=73.7
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-------hhH
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-------ITS 79 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~ 79 (222)
+....++|+|+|.+|+||||++|+|++....... ....+..........++ ..+.++||||...... ...
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence 3467899999999999999999999987653222 12222222222233344 6789999999664321 112
Q ss_pred hhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCC
Q 027503 80 SYY--RGALGALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 80 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~ 134 (222)
.++ ...|++++|..++.......-...+..+....+ --.+++||+|+.|......
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~ 170 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG 170 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC
Confidence 222 268999999766532111111223333333321 1146899999999764333
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.42 E-value=5.6e-12 Score=116.03 Aligned_cols=143 Identities=20% Similarity=0.184 Sum_probs=94.3
Q ss_pred CChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeE----------------EEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 23 VGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL----------------IKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 23 sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
++||||+.++.+..+...-...++..+....+..+... -.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 34999999999877654444444444433333332110 13799999999999888888888999
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH------------HH-HHHH-------
Q 027503 87 GALLVYDITRR---ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE------------EE-GKIL------- 143 (222)
Q Consensus 87 ~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~------------~~-~~~~------- 143 (222)
++++|+|++++ .+++.+. .+.. .++|+++|+||+|+........ +. ..++
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999873 3443332 2222 2489999999999864222100 00 1111
Q ss_pred ---HHH---------------cCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 144 ---AET---------------EGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 144 ---~~~---------------~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
... ..++++++||++|+|+++++..+...
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 011 13689999999999999999776543
No 279
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.41 E-value=8.4e-12 Score=106.54 Aligned_cols=165 Identities=21% Similarity=0.366 Sum_probs=119.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC--eEEEEEEEeCCChhhhhhhhHhhhcCC--
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD--KLIKAQIWDTAGQERFRAITSSYYRGA-- 85 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~-- 85 (222)
...-.|+|+|..++|||||+.+|.+.+ ...++.+.++.+..+..++ ...++.+|-..|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345689999999999999999987644 4456777888776655542 234789999988666666665555432
Q ss_pred --cEEEEEEeCCChhhH-HHHHHHHHHHHH-------------------------Hc-----------------------
Q 027503 86 --LGALLVYDITRRATF-ENTKKWLRELRE-------------------------FC----------------------- 114 (222)
Q Consensus 86 --d~~i~v~d~~~~~s~-~~~~~~~~~l~~-------------------------~~----------------------- 114 (222)
-++++|+|.+.|..+ +.+..|+..++. +.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 368889999999755 456667655433 00
Q ss_pred --------------CCCCeEEEEEeCCCCCC----CCCCC-------HHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 115 --------------SSCMAIVLVGNKSDLTH----SREVN-------EEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 115 --------------~~~~p~ivv~nK~Dl~~----~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
..++|++||.+|+|... +.... ....+.++..+|+.++++|++...+++-++.+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 01479999999999742 11121 223567788899999999999999999999999
Q ss_pred HHHHHHhh
Q 027503 170 INQIHQTT 177 (222)
Q Consensus 170 ~~~i~~~~ 177 (222)
.++++...
T Consensus 260 ~h~l~~~~ 267 (472)
T PF05783_consen 260 LHRLYGFP 267 (472)
T ss_pred HHHhccCC
Confidence 99987653
No 280
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.41 E-value=5e-12 Score=101.77 Aligned_cols=150 Identities=24% Similarity=0.241 Sum_probs=101.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC---------------------------------CCCCCCcceeeEEEEEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR---------------------------------LDSKPTIGVEFAYRNIRV 56 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 56 (222)
...+|++.+|+..=||||||-+|+...-. ......++++..++.+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45789999999999999999998743210 011222344444444443
Q ss_pred CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC
Q 027503 57 GDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN 136 (222)
Q Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (222)
.+.+|.+-||||+++|-.....-..-+|++|+++|+-.+ ..+-.+-...+....+- ..++|.+||+||.+..+-.
T Consensus 84 --~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 84 --EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLGI-RHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred --ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhCC-cEEEEEEeeecccccCHHH
Confidence 446899999999999988777777889999999999543 22222222334444333 4677889999998754322
Q ss_pred H----HHHHHHHHHcCC---eEEEEccccCCCHHH
Q 027503 137 E----EEGKILAETEGL---YFMETSAMQNLNVED 164 (222)
Q Consensus 137 ~----~~~~~~~~~~~~---~~~~~Sa~~~~gi~~ 164 (222)
. .+...|+..+++ .++++||..|+|+-.
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 2 233567777774 599999999998753
No 281
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.40 E-value=1.4e-12 Score=103.22 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=78.5
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027503 72 ERFRAITSSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY 150 (222)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (222)
+++..+.+.++.++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+||.+......+....+. ..+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 567778888999999999999999887 89999999876654 34899999999999764444334444444 47889
Q ss_pred EEEEccccCCCHHHHHHHHHH
Q 027503 151 FMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 151 ~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
++++||++|.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988764
No 282
>PTZ00258 GTP-binding protein; Provisional
Probab=99.39 E-value=1.4e-11 Score=102.75 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=62.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeE---------------EEEEEEeCCChhh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL---------------IKAQIWDTAGQER 73 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~ 73 (222)
....++|+|+|.||||||||+|+|.+........|..+.+.....+.+.+.. ..+.++|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 3567899999999999999999998877655555666666555555544322 3589999999542
Q ss_pred -------hhhhhHhhhcCCcEEEEEEeC
Q 027503 74 -------FRAITSSYYRGALGALLVYDI 94 (222)
Q Consensus 74 -------~~~~~~~~~~~~d~~i~v~d~ 94 (222)
........++.+|++++|+|.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 112233456789999999997
No 283
>PRK13768 GTPase; Provisional
Probab=99.39 E-value=3.4e-12 Score=101.59 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=69.5
Q ss_pred EEEEEeCCChhhh---hhhhHhhhc---C--CcEEEEEEeCCChhhHHHH--HHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 62 KAQIWDTAGQERF---RAITSSYYR---G--ALGALLVYDITRRATFENT--KKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 62 ~~~l~Dt~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
.+.+||+||+.+. +..+..+++ . ++++++|+|+.......+. ..|+...... ..++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6889999997653 333333333 2 8999999999765433222 2233222222 23589999999999875
Q ss_pred CCCCCHHHHHH----------------------------HHHHcC--CeEEEEccccCCCHHHHHHHHHHHH
Q 027503 132 SREVNEEEGKI----------------------------LAETEG--LYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 132 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.... +.... .....+ .+++++|++++.|++++++++.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 4322 11111 111223 5789999999999999999987765
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.39 E-value=5.2e-12 Score=96.96 Aligned_cols=102 Identities=14% Similarity=0.025 Sum_probs=63.5
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG 140 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (222)
....++++.|..-..... .. -+|.+|.|+|+.+..+... .+...+. ..=++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 355677887732111111 11 2578999999987655321 1111121 12278899999975322233333
Q ss_pred HHHHHH--cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 141 KILAET--EGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 141 ~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.+.... .+.+++++|+++|.|+.++|+++.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444333 457899999999999999999998764
No 285
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=4.9e-12 Score=95.14 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=100.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc---CCcE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR---GALG 87 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~ 87 (222)
+.-.|+++|+.+||||+|+-+|..+.+...... .+.....+.++.. .++++|.||+.+.+.-...+++ .+-+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHcccccccee
Confidence 345699999999999999999988755333211 1112223333332 3799999999988876666666 7889
Q ss_pred EEEEEeCCCh-hhHHHHHHHH-HHHHHH--cCCCCeEEEEEeCCCCCCCCCCCHHHHH----------------------
Q 027503 88 ALLVYDITRR-ATFENTKKWL-RELREF--CSSCMAIVLVGNKSDLTHSREVNEEEGK---------------------- 141 (222)
Q Consensus 88 ~i~v~d~~~~-~s~~~~~~~~-~~l~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---------------------- 141 (222)
+++|+|...- ....++..++ ..+... ..+++|++++-||.|+..... .+.++
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt--~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT--AEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc--HHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999987642 2334444444 334333 357799999999999864221 11100
Q ss_pred ----------------HHHHH--cCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 142 ----------------ILAET--EGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 142 ----------------~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
.|+.. ..+.|.++|++++ +++++-+|+.+.
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 11111 2256888999999 899999888764
No 286
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.36 E-value=5.3e-11 Score=98.61 Aligned_cols=118 Identities=15% Similarity=0.190 Sum_probs=83.0
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCC
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRR----------ATFENTKKWLRELREF-CSSCMAIVLVGNKSDL 129 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl 129 (222)
..+.+||.+|+...+..|..++.+++++|+|+|+++- ..+.+....+..+... .-.+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5789999999999999999999999999999999963 2333333333333322 1245899999999997
Q ss_pred CCC---------------CCCCHHHHHHHHHH-----------cCCeEEEEccccCCCHHHHHHHHHHHHHHhhh
Q 027503 130 THS---------------REVNEEEGKILAET-----------EGLYFMETSAMQNLNVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 130 ~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~ 178 (222)
..+ ...+.+.+..+... ..+..+.++|.+..++..+|+.+.+.+.....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 421 11223333333221 22557889999999999999998888776543
No 287
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.36 E-value=1e-11 Score=87.69 Aligned_cols=114 Identities=32% Similarity=0.360 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCC-CCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSK-PTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777654433 3332 333344567788999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
++.++..+++.+ |...+....+.++|.++++||.|+.+...+...... .++++|+++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999988765 777776666666889999999998543333333322 34567888888874
No 288
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.32 E-value=1.1e-12 Score=103.36 Aligned_cols=111 Identities=19% Similarity=0.141 Sum_probs=55.6
Q ss_pred EEEEEeCCChhhhhhhhHhhh--------cCCcEEEEEEeCCChhhH-HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503 62 KAQIWDTAGQERFRAITSSYY--------RGALGALLVYDITRRATF-ENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 132 (222)
.+.++|||||.++...+.... ...-++++++|.....+. ..+..++..+......+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 678999999988665444333 345578888887643321 12222232222222234999999999999762
Q ss_pred CC------------C-------CHHHHHHHHHH---cC-C-eEEEEccccCCCHHHHHHHHHHH
Q 027503 133 RE------------V-------NEEEGKILAET---EG-L-YFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 133 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
.. . ........+.. .+ . .++.+|+.+++|+.+++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 20 0 00111112222 12 3 79999999999999999655443
No 289
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.32 E-value=9.6e-12 Score=114.03 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=81.5
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CCCcceeeEEEEEEE--------------C
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----------------KPTIGVEFAYRNIRV--------------G 57 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~ 57 (222)
+.+...+|+|+|+.++|||||+++|+...-.... ....+++.....+.+ .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 4567789999999999999999999854321000 111112211122222 1
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 58 DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
+....+.++||||+..|.......+..+|++|+|+|+.++.......-|.. + ...++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~---~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-H---HHCCCCEEEEEECCccc
Confidence 224678999999999998888888999999999999998754443333322 2 23348999999999986
No 290
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=5.6e-11 Score=95.60 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=99.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCc----CC---CCCCCCcceeeEEEEEEE-------CCeEEEEEEEeCCChhh
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDE----FR---LDSKPTIGVEFAYRNIRV-------GDKLIKAQIWDTAGQER 73 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~----~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~ 73 (222)
....++++.++|+..||||||.++|..-. |+ .......+.+.....+.. .+..+.|+++|+||+..
T Consensus 3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence 34567999999999999999999986421 21 122223333433333222 35567899999999876
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC---HHHHHHHHHH----
Q 027503 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN---EEEGKILAET---- 146 (222)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~---- 146 (222)
.-........-.|..++|+|+..+..-+.+.- ..+.+.. ....+||+||+|...+.... ++.+....+.
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEc--Liig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAEC--LIIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchh--hhhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 54444444455689999999987543222221 1122221 13467888999875432211 1112222221
Q ss_pred ---cCCeEEEEccccC----CCHHHHHHHHHHHHHH
Q 027503 147 ---EGLYFMETSAMQN----LNVEDAFLQMINQIHQ 175 (222)
Q Consensus 147 ---~~~~~~~~Sa~~~----~gi~~~~~~l~~~i~~ 175 (222)
-+.|++++|+.+| +++.++.+.|.+++.+
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 1278999999999 6777777666666654
No 291
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.31 E-value=1.3e-10 Score=95.96 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeE---------------EEEEEEeCCChhh----
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL---------------IKAQIWDTAGQER---- 73 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~---- 73 (222)
++|+|+|.|+||||||+|+|.+........|..+.+.....+.+.+.. ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999877544445666555555555544421 2589999999542
Q ss_pred ---hhhhhHhhhcCCcEEEEEEeCC
Q 027503 74 ---FRAITSSYYRGALGALLVYDIT 95 (222)
Q Consensus 74 ---~~~~~~~~~~~~d~~i~v~d~~ 95 (222)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112334567999999999974
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=99.31 E-value=1.2e-11 Score=113.21 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=79.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CCCcceeeEEEEEEEC--------CeEEEEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----------------KPTIGVEFAYRNIRVG--------DKLIKAQ 64 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------~~~~~~~ 64 (222)
.+...+|+|+|+.++|||||+++|+...-.... ....++......+.+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 456679999999999999999999863211100 0111111111122222 1246789
Q ss_pred EEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 65 IWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
++||||+..|.......+..+|++|+|+|+.++.......-| ..+.. .++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 999999998887788889999999999999986443332223 33332 348999999999986
No 293
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.31 E-value=3.3e-11 Score=93.21 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=82.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------CCCcceee------EEEEEEECC-------------------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------KPTIGVEF------AYRNIRVGD------------------- 58 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~------~~~~~~~~~------------------- 58 (222)
.....|+|+|..|+|||||+++++........ ......+. ....+...+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 35788999999999999999998754110000 00000000 000011100
Q ss_pred -eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH
Q 027503 59 -KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE 137 (222)
Q Consensus 59 -~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 137 (222)
....+.+++|.|.-.. ...+....+..+.|+|+.+...... .. ... ...|.++++||+|+.+......
T Consensus 100 ~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~~--~~---~~~---~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKPL--KY---PGM---FKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred cCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchhh--hh---HhH---HhhCCEEEEEHHHccccchhhH
Confidence 0135566666662100 0111123344556677665432111 00 111 1267899999999975332223
Q ss_pred HHHHHHHHHc--CCeEEEEccccCCCHHHHHHHHHHH
Q 027503 138 EEGKILAETE--GLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 138 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
+......... ..+++++|+++|.|+.++|+++.+.
T Consensus 169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3333333333 3789999999999999999999874
No 294
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.31 E-value=2.6e-11 Score=109.83 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=79.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CCCcceeeEEEEE--EECCeEEEEEEEeCC
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----------------KPTIGVEFAYRNI--RVGDKLIKAQIWDTA 69 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~~l~Dt~ 69 (222)
+.+...+|+++|+.++|||||+.+|+...-.... ....+++.....+ ..++....+.|+|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 3456778999999999999999999753211100 0011122111122 234445788999999
Q ss_pred ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
|+..|.......+..+|++++|+|+..+.......-|.. +... +.|.++++||+|..
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc---CCCeEEEEECchhh
Confidence 999888888888999999999999987643333222322 2222 36789999999975
No 295
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.30 E-value=6.5e-11 Score=100.83 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=118.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..+++.++|+.++|||.|++.++++.+...+..+....+....+...+....+.+-|.+-. ....+...- ..+|++.+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 5788999999999999999999999888766666666677677777677777888888754 223222222 78899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC-CCHHHHHHHHHHcCCe-EEEEccccCCCHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE-VNEEEGKILAETEGLY-FMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~ 168 (222)
+||.+++.+|..+...+..-... .+.|+++|++|+|+.+..+ ..... .+++.+++++ -+.+|...... .++|..
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~k 577 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIK 577 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence 99999999999877654433322 4599999999999976432 22222 7889999875 45666664223 889999
Q ss_pred HHHHHHHhh
Q 027503 169 MINQIHQTT 177 (222)
Q Consensus 169 l~~~i~~~~ 177 (222)
|+..+..-.
T Consensus 578 L~~~A~~Ph 586 (625)
T KOG1707|consen 578 LATMAQYPH 586 (625)
T ss_pred HHHhhhCCC
Confidence 888766544
No 296
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.30 E-value=2.4e-11 Score=90.67 Aligned_cols=63 Identities=22% Similarity=0.174 Sum_probs=44.6
Q ss_pred EEEEEeCCChhh----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q 027503 62 KAQIWDTAGQER----FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127 (222)
Q Consensus 62 ~~~l~Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 127 (222)
.+.|+||||... ...++..+++.+|++|+|.+++...+-.+...+.+...... ..+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---CeEEEEEcCC
Confidence 578999999643 34678888899999999999998655455454444443333 4488888985
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.30 E-value=6.7e-11 Score=92.64 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=82.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
.....|+|+|.+|+|||||++.+.+...........+ .+ .+.. .....+.++||||.. .. .....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i~~-~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TVVT-GKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EEEe-cCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 3457799999999999999999986532111111111 11 1111 133578899999854 22 234468899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeE-EEEEeCCCCCCCCCCCHH---HH-HHHHHH--cCCeEEEEccccCCC
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAI-VLVGNKSDLTHSREVNEE---EG-KILAET--EGLYFMETSAMQNLN 161 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~---~~-~~~~~~--~~~~~~~~Sa~~~~g 161 (222)
+|+|...+..... ..++..+... +.|. ++|+||+|+.+....-.+ .. ..+... .+.+++.+||+++-.
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9999986543332 2233333332 3675 459999998643211111 11 112221 246899999998743
No 298
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.1e-11 Score=97.07 Aligned_cols=163 Identities=21% Similarity=0.196 Sum_probs=103.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC---CCCCCCcceeeEEEEE--------------E----E------CCeEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR---LDSKPTIGVEFAYRNI--------------R----V------GDKLIK 62 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~--------------~----~------~~~~~~ 62 (222)
+..++|.++|+..-|||||..+|.+--.. +.....+++...+... . . ......
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 67899999999999999999999863221 1111111111111100 0 0 022357
Q ss_pred EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHH
Q 027503 63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEG 140 (222)
Q Consensus 63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~ 140 (222)
+.|+|.||++-..+...+-..-.|++++|++++.+-.-......+..+.-.. - ..++++-||+|+...+. -+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig-i-k~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG-I-KNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc-c-ceEEEEecccceecHHHHHHHHHHH
Confidence 8999999999776655555556799999999997532222233233333222 1 45889999999986321 223334
Q ss_pred HHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 141 KILAET---EGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 141 ~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
++|.+. .+.+++++||..+.||+.++++|.+.+-
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 455443 3579999999999999999988877654
No 299
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.3e-11 Score=103.67 Aligned_cols=166 Identities=20% Similarity=0.198 Sum_probs=107.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC------------Ce----EEEEEEEeCCChhhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG------------DK----LIKAQIWDTAGQERF 74 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~l~Dt~G~~~~ 74 (222)
+.+-|||||+..+|||-|+..+.+..+...-..+++..+.-..+... +. --.+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 56779999999999999999998866544433333222211111111 11 115789999999999
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC-----------------CCH
Q 027503 75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE-----------------VNE 137 (222)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~-----------------~~~ 137 (222)
..+.......+|++|+|+|+.++---+.+. -+..++. .+.|+||.+||+|-.-... +..
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhH-HHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 999999999999999999998752111111 1233333 3489999999999652111 000
Q ss_pred HHH-------HHHHHH-cC-------------CeEEEEccccCCCHHHHHHHHHHHHHHhhhhh
Q 027503 138 EEG-------KILAET-EG-------------LYFMETSAMQNLNVEDAFLQMINQIHQTTIQK 180 (222)
Q Consensus 138 ~~~-------~~~~~~-~~-------------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~ 180 (222)
+.. -+|+.+ ++ +.++++||.+|+||.+++-+|++........+
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 100 111111 11 45889999999999999988888776655544
No 300
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.27 E-value=6.3e-11 Score=98.59 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=105.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcC--CC------------CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEF--RL------------DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (222)
..-+|+|+-+..-|||||+..|+...- .. ......++++-.+...+......+.++||||+..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 345799999999999999999986432 11 1122345555555555555557899999999999999
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHH------HHcC
Q 027503 77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEGKILA------ETEG 148 (222)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~------~~~~ 148 (222)
-....+...|++++++|+.++. ....+.- +......+.+.|||+||+|.++.+. +-++...-|. .+++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFV---lkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFV---LKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhh---HHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 8999999999999999998752 1222222 2333334467788899999876432 2122222222 2356
Q ss_pred CeEEEEccccCC----------CHHHHHHHHHHHH
Q 027503 149 LYFMETSAMQNL----------NVEDAFLQMINQI 173 (222)
Q Consensus 149 ~~~~~~Sa~~~~----------gi~~~~~~l~~~i 173 (222)
+|+++.|+..|. ++.-+|+.|++.+
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 899999988654 4556666665554
No 301
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.26 E-value=4.9e-11 Score=89.00 Aligned_cols=151 Identities=17% Similarity=0.062 Sum_probs=87.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEE---------------EEEC-------------------
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN---------------IRVG------------------- 57 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~------------------- 57 (222)
.++|.|.|++|||||+|+.+++..-........++.+.++.. +...
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 489999999999999999987754433222222222222200 0000
Q ss_pred -CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC
Q 027503 58 -DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN 136 (222)
Q Consensus 58 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (222)
...+.+.|+...|.= ...-++.-..+.-|+|+|+..++.... +-...+. ..=++|+||.||...-..+
T Consensus 93 ~~~~~Dll~iEs~GNL---~~~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i~------~aDllVInK~DLa~~v~~d 161 (202)
T COG0378 93 DFPDLDLLFIESVGNL---VCPFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGIF------KADLLVINKTDLAPYVGAD 161 (202)
T ss_pred cCCcCCEEEEecCcce---ecccCcchhhceEEEEEECCCCCCCcc--cCCCcee------EeeEEEEehHHhHHHhCcc
Confidence 000234444444400 001111112236677777776532111 0001111 1237889999999877777
Q ss_pred HHHHHHHHHHc--CCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 137 EEEGKILAETE--GLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 137 ~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.+...+-+++. +.+++++|.++|+|++++++++...+
T Consensus 162 levm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 162 LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 77777766664 48999999999999999998887653
No 302
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.25 E-value=1.1e-10 Score=95.86 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=65.2
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HH
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EE 138 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~ 138 (222)
+.+.|+||+|...-.. .....+|.++++.+...+.....+. ..+.+ +.-++|+||+|+....... ..
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 6789999999663222 2466799999998755554443322 11212 2238899999987533211 11
Q ss_pred HHHHHHHH-------cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 139 EGKILAET-------EGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 139 ~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
+....... +..+++.+|+.++.|++++++.+.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111111 2257999999999999999999988654
No 303
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.23 E-value=1.8e-10 Score=92.16 Aligned_cols=80 Identities=20% Similarity=0.154 Sum_probs=58.3
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhh------
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQER------ 73 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~------ 73 (222)
|+|+|.|+||||||+|+|.+........|..+.+.....+.+.+. +..+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998875555566666666555555543 23589999999432
Q ss_pred -hhhhhHhhhcCCcEEEEEEeC
Q 027503 74 -FRAITSSYYRGALGALLVYDI 94 (222)
Q Consensus 74 -~~~~~~~~~~~~d~~i~v~d~ 94 (222)
........++.+|++++|+|.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 111233456789999999986
No 304
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.22 E-value=5.7e-10 Score=92.59 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=93.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC----cCC------------CCCCCC---cceeeEE---E--EE-EECCeEEEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARD----EFR------------LDSKPT---IGVEFAY---R--NI-RVGDKLIKA 63 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~----~~~------------~~~~~~---~~~~~~~---~--~~-~~~~~~~~~ 63 (222)
....+.|.|+|+.++|||||+|+|.+. ... +.+.+. .+.+... . .+ ..++....+
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 456789999999999999999999987 222 111222 2222222 1 12 224555689
Q ss_pred EEEeCCChhhh--------hh---------------------hhHhhhc-CCcEEEEEE-eCC--C--hhhHH-HHHHHH
Q 027503 64 QIWDTAGQERF--------RA---------------------ITSSYYR-GALGALLVY-DIT--R--RATFE-NTKKWL 107 (222)
Q Consensus 64 ~l~Dt~G~~~~--------~~---------------------~~~~~~~-~~d~~i~v~-d~~--~--~~s~~-~~~~~~ 107 (222)
.++||+|...- .. =+...+. ++|+.|+|. |.+ + ++.+. .-..|+
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 99999993310 00 0334455 889988888 653 1 12222 223455
Q ss_pred HHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc--CCCHHHHHH
Q 027503 108 RELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ--NLNVEDAFL 167 (222)
Q Consensus 108 ~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~gi~~~~~ 167 (222)
..++... +|+++|+|+.|-.... ..+.+..+...++++++.+|+.. ...|..+++
T Consensus 174 ~eLk~~~---kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~ 230 (492)
T TIGR02836 174 EELKELN---KPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLE 230 (492)
T ss_pred HHHHhcC---CCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHH
Confidence 5555544 9999999999943212 44556677777888877777653 334444443
No 305
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.21 E-value=1.7e-10 Score=95.40 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=78.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcce---eeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhHhhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV---EFAYRNIRVGDKLIKAQIWDTAGQERFRA-----ITSSYY 82 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~ 82 (222)
..++|+|+|.+|+|||||||+|.|-.-.....+.+|+ +.....+.....+ .+.+||.||...... +...-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5789999999999999999999764322222222221 2222333333322 589999999653222 222335
Q ss_pred cCCcEEEEEEeCCChhhHHHHHH-HHHHHHHHcCCCCeEEEEEeCCCCC-------CCCCCCHHH----HHHHHHH----
Q 027503 83 RGALGALLVYDITRRATFENTKK-WLRELREFCSSCMAIVLVGNKSDLT-------HSREVNEEE----GKILAET---- 146 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~~~~~~~---- 146 (222)
..-|.+|++.+- .|..... +...+... ++|+++|-+|+|.. ..+..+.+. .++.+..
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 566887776653 2333222 22334443 48999999999951 112223222 2222222
Q ss_pred cC---CeEEEEccccC--CCHHHHHHHHHHHHHHhh
Q 027503 147 EG---LYFMETSAMQN--LNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 147 ~~---~~~~~~Sa~~~--~gi~~~~~~l~~~i~~~~ 177 (222)
.+ -++|.+|..+- .++..+.+.|.+.+-.++
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 23 35889998864 457777777777665554
No 306
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.3e-10 Score=97.50 Aligned_cols=153 Identities=23% Similarity=0.234 Sum_probs=101.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-----------------------------CCCCcceeeEEEEEEECCeEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLD-----------------------------SKPTIGVEFAYRNIRVGDKLI 61 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (222)
..+.++++|+..+|||||+.+|+..--... -....|+........++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 578999999999999999998763210000 022234455555555656667
Q ss_pred EEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503 62 KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TFE---NTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (222)
.++|+|+||+..|-.....-...+|+.++|+|++-.+ .|+ ..+.....++... . ..++|++||+|+.+...-
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i-~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-I-SQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-c-ceEEEEeecccccCccHH
Confidence 8999999998888887888888999999999998642 222 1222223333333 2 457888999999875443
Q ss_pred CHHHHH----HHH-HHcC-----CeEEEEccccCCCHHHH
Q 027503 136 NEEEGK----ILA-ETEG-----LYFMETSAMQNLNVEDA 165 (222)
Q Consensus 136 ~~~~~~----~~~-~~~~-----~~~~~~Sa~~~~gi~~~ 165 (222)
-.+++. .|. ...| +.|++||+.+|+|+-..
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 333332 222 2333 57999999999987543
No 307
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.1e-10 Score=94.12 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=112.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC---CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEF---RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
.|+..|+-.-|||||++.+.+... ++......+.+..+.....++. .+.|+|.||++++-......+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 578899999999999999987543 3455667778887777777765 78999999999888777778889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH---HcCCeEEEEccccCCCHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE---TEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
|++.+++-..+. ...+..+.-... ...++|+||+|..+...+. +...+... ....+++.+|+.+|+||.++.+
T Consensus 80 vV~~deGl~~qt-gEhL~iLdllgi--~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQT-GEHLLILDLLGI--KNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhh-HHHHHHHHhcCC--CceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999976533222 222233333321 2348889999998743221 12222221 3346789999999999999999
Q ss_pred HHHHHHH
Q 027503 168 QMINQIH 174 (222)
Q Consensus 168 ~l~~~i~ 174 (222)
.|.+...
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9998885
No 308
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.17 E-value=1.2e-09 Score=88.04 Aligned_cols=116 Identities=15% Similarity=0.214 Sum_probs=69.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------CCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER------- 73 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 73 (222)
..++|+|+|.+|+|||||+|.|++....... ..+..+......+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 5789999999999999999999986654332 12223344444566678889999999999221
Q ss_pred -----------hhhhh-------H--hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 74 -----------FRAIT-------S--SYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 74 -----------~~~~~-------~--~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|.... + ..=.+.|+++++++++... .-.++ ..++..... +++|-|+.|+|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~Ls~~-vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRLSKR-VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHHTTT-SEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHhccc-ccEEeEEecccccC
Confidence 11100 0 1112568999999987531 22232 223343333 88999999999865
No 309
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.17 E-value=2.5e-09 Score=87.57 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=88.8
Q ss_pred eeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhH-------HHHHHHHHHHHHHcC----C
Q 027503 48 EFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATF-------ENTKKWLRELREFCS----S 116 (222)
Q Consensus 48 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~l~~~~~----~ 116 (222)
.+....+.+.+ ..|.++|.+|+...+.-|.+.+.+++++|+|+++++-... ..+..-+..+..... .
T Consensus 184 GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 184 GIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred CeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 33444455544 6889999999999999999999999999999999864321 122222333333322 3
Q ss_pred CCeEEEEEeCCCCCCC---------------CCCCHHHHHHHHHH----------cCCeEEEEccccCCCHHHHHHHHHH
Q 027503 117 CMAIVLVGNKSDLTHS---------------REVNEEEGKILAET----------EGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 117 ~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
..++|+++||.|+-++ .....+++..+... ..+.+..+.|.+..+|+.+|..+.+
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d 341 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD 341 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence 4899999999998431 11233444433322 2356777899999999999999998
Q ss_pred HHHHhhhh
Q 027503 172 QIHQTTIQ 179 (222)
Q Consensus 172 ~i~~~~~~ 179 (222)
.+.....+
T Consensus 342 ~Ii~~nlk 349 (354)
T KOG0082|consen 342 TIIQNNLK 349 (354)
T ss_pred HHHHHHHH
Confidence 88766543
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.16 E-value=4.3e-10 Score=91.79 Aligned_cols=103 Identities=15% Similarity=0.028 Sum_probs=63.8
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHH-
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEE- 139 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~- 139 (222)
+.+.|+||+|.... .......+|.++++...... +++......+. ++|.++|+||+|+..........
T Consensus 127 ~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHH
Confidence 57889999985422 22356677888888654433 34333333222 37789999999987532211000
Q ss_pred -----HHHHHH---HcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 140 -----GKILAE---TEGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 140 -----~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
...+.. .+..+++.+|++++.|++++++++.+...
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 011111 12346999999999999999999988744
No 311
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.3e-10 Score=100.89 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=87.2
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-----C-----------CCCcceeeEEEEEEECCe-EEEEEEEeCCCh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD-----S-----------KPTIGVEFAYRNIRVGDK-LIKAQIWDTAGQ 71 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~ 71 (222)
.+..-+|.|+|+..+|||||..+++-..-... . ....++++....++.... ...+.++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 66778899999999999999999873221100 0 111344454444444444 478999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
-.|.......++-+|++++|+|+..+-..+...-|.+... .++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence 9999999999999999999999998755454444544333 3389999999999764
No 312
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.15 E-value=2.1e-09 Score=94.03 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=73.9
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-CCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-------h---
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSK-PTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-------A--- 76 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~--- 76 (222)
+-+..++|+|+|.+|+||||++|.|++........ ...+..........++ ..+.++||||..... .
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence 34567899999999999999999999976433332 1222222222233444 578999999955321 1
Q ss_pred hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCC--CeEEEEEeCCCCCC
Q 027503 77 ITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSC--MAIVLVGNKSDLTH 131 (222)
Q Consensus 77 ~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~Dl~~ 131 (222)
....++. .+|++|+|..++.......-..++..+....+.+ ..+|||.|+.|...
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1222333 5899999998764322112223444444433211 35788899999874
No 313
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.14 E-value=8.7e-11 Score=93.75 Aligned_cols=157 Identities=18% Similarity=0.113 Sum_probs=106.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSSYY 82 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 82 (222)
...-|.++|..|+|||||+++|.+....+...-..+.+............ .+.+.||-|.-. ....+....
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 45679999999999999999999877666665566666665555554443 578899999432 112344566
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeE----EEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI----VLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ 158 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~----ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (222)
..+|.++-|.|+++|..-.....-+..+....-...|. +=|=||+|..... .+.+ ..+ .+.+|+.+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e~E-------~n~--~v~isalt 325 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VEEE-------KNL--DVGISALT 325 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Cccc-------cCC--cccccccc
Confidence 78999999999999987666555555555554222333 3345777765322 1111 121 56799999
Q ss_pred CCCHHHHHHHHHHHHHHhhh
Q 027503 159 NLNVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~~~~~ 178 (222)
|.|+.++.+.+-..+.....
T Consensus 326 gdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 326 GDGLEELLKAEETKVASETT 345 (410)
T ss_pred CccHHHHHHHHHHHhhhhhe
Confidence 99999999888777665543
No 314
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=7.7e-10 Score=86.93 Aligned_cols=119 Identities=20% Similarity=0.254 Sum_probs=70.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------CCCc------ceee----------------------------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------KPTI------GVEF---------------------------- 49 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~~------~~~~---------------------------- 49 (222)
-....|+++|+.|+||||+++.+.+..+.+.. .|+. ...+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 34568999999999999999999987532211 0100 0000
Q ss_pred ---------EEEEEEECC-eEEEEEEEeCCChhh-------------hhhhhHhhhc-CCcEEEEEEeCCChhhHHHHHH
Q 027503 50 ---------AYRNIRVGD-KLIKAQIWDTAGQER-------------FRAITSSYYR-GALGALLVYDITRRATFENTKK 105 (222)
Q Consensus 50 ---------~~~~~~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~ 105 (222)
....+.+.+ ....|+++|+||... ...+...|+. ..+++++|+|+...-.-.+...
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 000111100 113789999999642 2235667777 4468888998765332222222
Q ss_pred HHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 106 WLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 106 ~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
+. +.....+.|+++|+||.|..+
T Consensus 184 ia---~~ld~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 184 LA---KEVDPQGERTIGVITKLDLMD 206 (240)
T ss_pred HH---HHHHHcCCcEEEEEECCCCCC
Confidence 22 333334589999999999875
No 315
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=7e-10 Score=91.84 Aligned_cols=138 Identities=17% Similarity=0.122 Sum_probs=95.6
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCc--CC--------------CCC----CCCcceeeEEEEEEECCeEEEEEEE
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDE--FR--------------LDS----KPTIGVEFAYRNIRVGDKLIKAQIW 66 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~--~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~l~ 66 (222)
++-.+.-..+|+-+|.+|||||-..|+--. .. .+. ....|+++......++.....+.|.
T Consensus 7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLL 86 (528)
T COG4108 7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLL 86 (528)
T ss_pred HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEecc
Confidence 334455668999999999999999976211 00 000 1113566666666666666889999
Q ss_pred eCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027503 67 DTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET 146 (222)
Q Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (222)
||||++.|..-+...+..+|.+++|+|+..+-- ....+++... ...++|++=++||.|-. ..-+.+...+....
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVc---rlR~iPI~TFiNKlDR~--~rdP~ELLdEiE~~ 160 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVC---RLRDIPIFTFINKLDRE--GRDPLELLDEIEEE 160 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHH---hhcCCceEEEeeccccc--cCChHHHHHHHHHH
Confidence 999999999999999999999999999986532 1223333333 33459999999999954 33345666666666
Q ss_pred cCCe
Q 027503 147 EGLY 150 (222)
Q Consensus 147 ~~~~ 150 (222)
+++.
T Consensus 161 L~i~ 164 (528)
T COG4108 161 LGIQ 164 (528)
T ss_pred hCcc
Confidence 6544
No 316
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1e-09 Score=94.81 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=88.0
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCC---------------cceeeEEEEEE-----ECCeEEEEEE
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPT---------------IGVEFAYRNIR-----VGDKLIKAQI 65 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~---------------~~~~~~~~~~~-----~~~~~~~~~l 65 (222)
..+.+...+++++|+-++|||+|+..|.....+..+..+ .+..+.....+ ..++.+-+.+
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 345678899999999999999999999876654332111 11222211111 2466678899
Q ss_pred EeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
+||||+-.|..-....+..+|++++++|+.++-.+..-+ .++....+..|+++|+||+|..
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr----~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER----IIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH----HHHHHHhccCcEEEEEehhHHH
Confidence 999999999998999999999999999998876554422 2344444558999999999964
No 317
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.08 E-value=5e-10 Score=89.79 Aligned_cols=55 Identities=18% Similarity=0.092 Sum_probs=39.4
Q ss_pred CeEEEEEeCCCCCCCCCCCHHHHHHHHHH--cCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 118 MAIVLVGNKSDLTHSREVNEEEGKILAET--EGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 118 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
.+-++|+||+|+........+........ .+.+++.+|+++|+|++++++||.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999975322223333333333 35789999999999999999999764
No 318
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=7.3e-10 Score=84.58 Aligned_cols=147 Identities=19% Similarity=0.245 Sum_probs=92.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-----hhhHhhhcCC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-----AITSSYYRGA 85 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~ 85 (222)
.-||+++|.+|||||++=-.++.+-. .....++.++++.-.++.+-|. ..+.+||++|++.+- ......+.+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 45899999999999998766553221 1233555666776666666543 468999999998543 2445678899
Q ss_pred cEEEEEEeCCChhhHHHHHHHH---HHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHHH----HHHHHcCCeEEEEcc
Q 027503 86 LGALLVYDITRRATFENTKKWL---RELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEGK----ILAETEGLYFMETSA 156 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~---~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~----~~~~~~~~~~~~~Sa 156 (222)
+++++|||+...+-..++..+- ..+.... ....+.++.+|+|+..... ....... .+....++.++.+|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999999875444444333 3333333 3366778889999975332 1112221 222223456777776
Q ss_pred ccCC
Q 027503 157 MQNL 160 (222)
Q Consensus 157 ~~~~ 160 (222)
.+..
T Consensus 162 wDet 165 (295)
T KOG3886|consen 162 WDET 165 (295)
T ss_pred hhHH
Confidence 6543
No 319
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=5.6e-09 Score=84.96 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=85.5
Q ss_pred CCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCC-cceeeEEEEEEEC------Ce--------E-------
Q 027503 3 DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPT-IGVEFAYRNIRVG------DK--------L------- 60 (222)
Q Consensus 3 ~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~------~~--------~------- 60 (222)
.+.+.+++-...|+++|.-..|||||++.|+...++....-. .+.+.+.....-+ |. +
T Consensus 49 ~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~F 128 (532)
T KOG1954|consen 49 ALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKF 128 (532)
T ss_pred cccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhh
Confidence 466778888999999999999999999999999887554222 2222222211111 00 0
Q ss_pred ------------------EEEEEEeCCChh-----------hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 027503 61 ------------------IKAQIWDTAGQE-----------RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111 (222)
Q Consensus 61 ------------------~~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~ 111 (222)
-.++++||||.- .|.....+|..++|.+|++||+.-.+--++ +-..+.
T Consensus 129 G~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdE---f~~vi~ 205 (532)
T KOG1954|consen 129 GNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE---FKRVID 205 (532)
T ss_pred HHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHH---HHHHHH
Confidence 267899999932 255678899999999999999764432222 223344
Q ss_pred HHcCCCCeEEEEEeCCCCCCC
Q 027503 112 EFCSSCMAIVLVGNKSDLTHS 132 (222)
Q Consensus 112 ~~~~~~~p~ivv~nK~Dl~~~ 132 (222)
....+.-.+-||+||+|..+.
T Consensus 206 aLkG~EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 206 ALKGHEDKIRVVLNKADQVDT 226 (532)
T ss_pred HhhCCcceeEEEeccccccCH
Confidence 444444567888999998764
No 320
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.96 E-value=2.6e-09 Score=78.84 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=65.6
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027503 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFME 153 (222)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (222)
|+.+..+.+.++|++++|+|+.++..... ..+...+. ..+.|+++|+||+|+.+.... .....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 45678888899999999999987643322 11222221 234899999999998642211 1111333445678999
Q ss_pred EccccCCCHHHHHHHHHHHHH
Q 027503 154 TSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999998887654
No 321
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.96 E-value=1.8e-08 Score=82.16 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=74.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhh------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD----------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER------ 73 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------ 73 (222)
...+.|+++|+.|+|||||+|.|++...... ..++..+..+...+.-++..+.+.++||||...
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 5689999999999999999999998743322 123344455555666678888999999999321
Q ss_pred ------------hhhh-------hHh-hh--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 74 ------------FRAI-------TSS-YY--RGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 74 ------------~~~~-------~~~-~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
+... .+. .+ .+.|+++|.+.++... +-.++. .+..+... +-+|-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe-~Mk~ls~~----vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE-AMKRLSKR----VNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH-HHHHHhcc----cCeeeeeeccccC
Confidence 1110 011 11 2568999999877432 222222 23333332 5567778899986
Q ss_pred C
Q 027503 131 H 131 (222)
Q Consensus 131 ~ 131 (222)
.
T Consensus 176 T 176 (373)
T COG5019 176 T 176 (373)
T ss_pred C
Confidence 4
No 322
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.7e-08 Score=81.51 Aligned_cols=84 Identities=18% Similarity=0.136 Sum_probs=61.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC----------------CeEEEEEEEeCCChh---
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG----------------DKLIKAQIWDTAGQE--- 72 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~--- 72 (222)
.+++.|+|.||||||||.|++..........|..+++-......+. -.+..+.++|.+|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999999888654555666555444333321 123578899999833
Q ss_pred ----hhhhhhHhhhcCCcEEEEEEeCC
Q 027503 73 ----RFRAITSSYYRGALGALLVYDIT 95 (222)
Q Consensus 73 ----~~~~~~~~~~~~~d~~i~v~d~~ 95 (222)
-...-....++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 23445567788999999999865
No 323
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.95 E-value=7.8e-09 Score=78.86 Aligned_cols=95 Identities=24% Similarity=0.153 Sum_probs=66.4
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HH
Q 027503 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ET 146 (222)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~ 146 (222)
..+..++..+++++|++++|+|+.++... |...+... ..+.|+++|+||+|+.... ...+....+. ..
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhh
Confidence 33577888999999999999999876421 22222222 2348999999999997532 2333333333 22
Q ss_pred cCC---eEEEEccccCCCHHHHHHHHHHHH
Q 027503 147 EGL---YFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 147 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.+. .++.+||++|.|++++++.+.+.+
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 333 689999999999999999998865
No 324
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3e-08 Score=81.36 Aligned_cols=145 Identities=17% Similarity=0.246 Sum_probs=86.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD---------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER------- 73 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 73 (222)
...|.++++|+.|.|||||+|.|+...+... ...+..+......+.-+|..+.++++||||...
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3569999999999999999999988755432 122333444445556678888999999999211
Q ss_pred -----------hh-------hhhHhhhc--CCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503 74 -----------FR-------AITSSYYR--GALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132 (222)
Q Consensus 74 -----------~~-------~~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 132 (222)
+. .+.+..+. +.|+++|.+.++... .-.++. .+..+.. .+.+|-|+.|+|....
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~-~Mk~l~~----~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE-FMKKLSK----KVNLIPVIAKADTLTK 173 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH-HHHHHhc----cccccceeeccccCCH
Confidence 11 11222333 679999999877531 112211 2222322 2667777899998653
Q ss_pred CCCCH--HHHHHHHHHcCCeEEEEccccC
Q 027503 133 REVNE--EEGKILAETEGLYFMETSAMQN 159 (222)
Q Consensus 133 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~ 159 (222)
.+... ..+..-....+++++.......
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 32211 1123334556677666554443
No 325
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=3.1e-08 Score=76.29 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=86.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC---------CCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS---------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER------- 73 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------- 73 (222)
...|+|+++|.+|.|||||+|.|+...+.... ..|.........+.-++...+++++||||...
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 45899999999999999999999865432211 11122222333455567778899999999221
Q ss_pred -----------hhh--------hhHhhhc--CCcEEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 74 -----------FRA--------ITSSYYR--GALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 74 -----------~~~--------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|.. .....++ +.+++++.+..+. .++..+. .+++.+.+. +.++-|+-|+|...
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeeccccc
Confidence 111 1122332 4578888887764 3333322 233444433 45666778999653
Q ss_pred CCC--CCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 132 SRE--VNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
-++ .-.+.++.-...+++.+++.-+.+...-+..++.
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~ 237 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND 237 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence 111 1112223333456777777666555444444433
No 326
>PRK12289 GTPase RsgA; Reviewed
Probab=98.91 E-value=1.1e-08 Score=84.95 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=68.0
Q ss_pred hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027503 76 AITSSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET 154 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (222)
.+.+..+.++|.+++|+|+.++. ....+..|+..+.. .++|++||+||+|+...... ..........+++++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 45556789999999999999875 44456677665533 34899999999999642211 12223334678899999
Q ss_pred ccccCCCHHHHHHHHHHHH
Q 027503 155 SAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 155 Sa~~~~gi~~~~~~l~~~i 173 (222)
||.++.|++++++.+...+
T Consensus 156 SA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 156 SVETGIGLEALLEQLRNKI 174 (352)
T ss_pred EcCCCCCHHHHhhhhccce
Confidence 9999999999998887643
No 327
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.90 E-value=9.6e-08 Score=74.13 Aligned_cols=93 Identities=22% Similarity=0.136 Sum_probs=66.6
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhh
Q 027503 5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAI 77 (222)
Q Consensus 5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~ 77 (222)
|+-.+....+|+++|-|.+|||||+..+....-........+.+.....+.+++ ..+++.|.||..+- ...
T Consensus 55 FeV~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQ 132 (364)
T KOG1486|consen 55 FEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQ 132 (364)
T ss_pred eeeeccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCce
Confidence 444566788999999999999999999876543333333444555556677776 56799999995421 223
Q ss_pred hHhhhcCCcEEEEEEeCCChhh
Q 027503 78 TSSYYRGALGALLVYDITRRAT 99 (222)
Q Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s 99 (222)
..+..+.+|.+++|.|++..+.
T Consensus 133 viavArtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 133 VIAVARTADLILMVLDATKSED 154 (364)
T ss_pred EEEEeecccEEEEEecCCcchh
Confidence 4456778999999999987653
No 328
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.88 E-value=3.6e-08 Score=78.42 Aligned_cols=154 Identities=18% Similarity=0.069 Sum_probs=89.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcC-----------CCCCCCCc---------------ceeeEEEEEEE---------
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEF-----------RLDSKPTI---------------GVEFAYRNIRV--------- 56 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~-----------~~~~~~~~---------------~~~~~~~~~~~--------- 56 (222)
...|.|.|.||+|||||+..|...-. ++++..+- ..+.+.+....
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~ 130 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSR 130 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhH
Confidence 45899999999999999998863211 12221110 11112111111
Q ss_pred ---------CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q 027503 57 ---------GDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKS 127 (222)
Q Consensus 57 ---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 127 (222)
+.-.+.+.|+.|.|--+.. ......+|.+++|.-..-++..+.+..= +-+. -=++|+||.
T Consensus 131 at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~G---imEi-----aDi~vINKa 199 (323)
T COG1703 131 ATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAG---IMEI-----ADIIVINKA 199 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhh---hhhh-----hheeeEecc
Confidence 1122577888888743222 2445668999998877766555544432 2222 237889999
Q ss_pred CCCCCCCCCHHHHHHHHHH--------cCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503 128 DLTHSREVNEEEGKILAET--------EGLYFMETSAMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 176 (222)
|......--.+....+-.. +.-+++.+||.+|+|++++++.+.+...-.
T Consensus 200 D~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 200 DRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred ChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 9543211111111111111 235799999999999999998888765543
No 329
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.87 E-value=1.5e-08 Score=86.13 Aligned_cols=165 Identities=21% Similarity=0.364 Sum_probs=119.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..+|+.|+|..++|||+|+++++...+...-.+ .+ ..+.+.+-.++...-+.+.|-+|.- ...|....|++|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~-e~-~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EG-GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCC-cC-ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence 578999999999999999999998887544322 22 3344555566666677788887722 4456678899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCC--CCCCCHHHHHHHH-HHcCCeEEEEccccCCCHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTH--SREVNEEEGKILA-ETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
||.+.+..+|+.+..+...+..+. ...+|+++++++.-+.. .+.+.+..++.++ +...+.++++.+..|.++..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 999999999999887766664443 34588888887654322 2333444444444 4445789999999999999999
Q ss_pred HHHHHHHHHhhhhhhh
Q 027503 167 LQMINQIHQTTIQKSL 182 (222)
Q Consensus 167 ~~l~~~i~~~~~~~~~ 182 (222)
+.+..++...+.....
T Consensus 182 ~~~~~k~i~~~~~qq~ 197 (749)
T KOG0705|consen 182 QEVAQKIVQLRKYQQL 197 (749)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999988877544443
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.87 E-value=1.1e-08 Score=83.06 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=67.8
Q ss_pred HhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccc
Q 027503 79 SSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAM 157 (222)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (222)
...+.++|.+++|+|+.++. ++..+..|+..+... ++|+++|+||+|+.+.. .......+....+.+++.+|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 34588999999999999987 778888887766543 48999999999996531 1122233345578899999999
Q ss_pred cCCCHHHHHHHHHH
Q 027503 158 QNLNVEDAFLQMIN 171 (222)
Q Consensus 158 ~~~gi~~~~~~l~~ 171 (222)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999987764
No 331
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.87 E-value=3.9e-09 Score=82.61 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=83.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcC-----------CCCCCCC---------------cceeeEEEEEEECC------
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEF-----------RLDSKPT---------------IGVEFAYRNIRVGD------ 58 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~------ 58 (222)
..+.|.|.|+||+|||||++.|...-. ++++..+ .....+.+..-..+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 567999999999999999998763211 1111000 01122222222110
Q ss_pred ------------eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeC
Q 027503 59 ------------KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNK 126 (222)
Q Consensus 59 ------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK 126 (222)
-.+.+.|++|.|--.. -.....-+|.+++|..+..++..+.+..- +-+. +=++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaG---imEi-----aDi~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAG---IMEI-----ADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TT---HHHH------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhh---hhhh-----ccEEEEeC
Confidence 1156778888763221 22345678999999998877655544332 2222 23788899
Q ss_pred CCCCCCCCCCHHHHHHHHHH-------cCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503 127 SDLTHSREVNEEEGKILAET-------EGLYFMETSAMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 127 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 176 (222)
+|....... ..+.+..... +..+++.+||.++.|++++++.+.+.....
T Consensus 177 aD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 177 ADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp -SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 995432111 1111111111 235899999999999999998887754433
No 332
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.84 E-value=1.1e-08 Score=80.39 Aligned_cols=158 Identities=22% Similarity=0.168 Sum_probs=95.8
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCC-CcceeeEEEEEEECCeEEEEEEEeCCCh----------hhh
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP-TIGVEFAYRNIRVGDKLIKAQIWDTAGQ----------ERF 74 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~ 74 (222)
+.+++..++++++|.+++|||+|+|.++.......... ..+.......+.++. .+.++|.||. ..+
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchH
Confidence 44567789999999999999999999987664433322 444444445555554 6789999991 234
Q ss_pred hhhhHhhhcCCc---EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC----CCHHHHHH-HH--
Q 027503 75 RAITSSYYRGAL---GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE----VNEEEGKI-LA-- 144 (222)
Q Consensus 75 ~~~~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~-~~-- 144 (222)
..+...|+.+-+ -+++++|++-+..-.+.. .++.+.+ .++|+.+|.||+|...... -+..-+.. |.
T Consensus 207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDNP-EIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHhHHHHHHhhhhhheeeeeeeccCCCCCCChH-HHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 555666654332 456667766543212211 1222333 3499999999999753111 11111111 11
Q ss_pred ----HHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 145 ----ETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 145 ----~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
.....+.+.+|+.++.|+++++-.+.
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehh
Confidence 11225677899999999998774443
No 333
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.82 E-value=1.8e-07 Score=79.16 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=76.0
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCC
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA----------TFENTKKWLRELREFC-SSCMAIVLVGNKSDL 129 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl 129 (222)
..+.++|.+|+...+.-|..++.+++++|+|+++++-. .+.+....+..+.... -...|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 57899999999988999999999999999999987421 1222222333332221 245899999999996
Q ss_pred CC------C----------CC--CCHHHHHHHHHH------------cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 130 TH------S----------RE--VNEEEGKILAET------------EGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 130 ~~------~----------~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.. . .. ...+.+..+... ..+.++.++|.+...+..+|+.+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 31 0 11 233445544432 224577899999999999998876643
No 334
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=6.6e-08 Score=76.62 Aligned_cols=145 Identities=18% Similarity=0.155 Sum_probs=94.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc----------CCCCC----CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDE----------FRLDS----KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (222)
..-++|..+|+..-|||||..++..-- +.... ....++++...++.++-....+..+|+||+..|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 356899999999999999998865311 11111 1224566666666666555678899999999887
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeE-EEEEeCCCCCCCCCCC---HHHHHHHHHHcC---
Q 027503 76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI-VLVGNKSDLTHSREVN---EEEGKILAETEG--- 148 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 148 (222)
.....-....|+.|+|+++++..- ...+..+...+.. ++|. ++++||+|+.+..+.. ..+.+++...++
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 666666667899999999998531 1112222222332 2554 5669999998744322 233456666666
Q ss_pred --CeEEEEcccc
Q 027503 149 --LYFMETSAMQ 158 (222)
Q Consensus 149 --~~~~~~Sa~~ 158 (222)
.|++.-||..
T Consensus 166 d~~Pii~gSal~ 177 (394)
T COG0050 166 DDTPIIRGSALK 177 (394)
T ss_pred CCcceeechhhh
Confidence 4688888764
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.80 E-value=1.3e-07 Score=77.52 Aligned_cols=157 Identities=19% Similarity=0.133 Sum_probs=96.8
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCC--------------cceeeEEEEEEECCeE------------
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPT--------------IGVEFAYRNIRVGDKL------------ 60 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~------------ 60 (222)
++-+..+.+.++|+.+.|||||+-.|..+..+...-.+ .+-++....+-+++..
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 44556788999999999999999988765543332111 1222222222222111
Q ss_pred ---------EEEEEEeCCChhhhhh--hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503 61 ---------IKAQIWDTAGQERFRA--ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129 (222)
Q Consensus 61 ---------~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 129 (222)
.-+.|+||.|++.|-. +...+-...|..++++.+++..+-.. +..+..+. ..+.|+++++||+|+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~---a~~lPviVvvTK~D~ 267 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL---AMELPVIVVVTKIDM 267 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh---hhcCCEEEEEEeccc
Confidence 2568999999998754 44455678899999999998754221 22222222 224899999999999
Q ss_pred CCCCCCCH--HHHH----------------------HHHHHcC---CeEEEEccccCCCHHHHHH
Q 027503 130 THSREVNE--EEGK----------------------ILAETEG---LYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 130 ~~~~~~~~--~~~~----------------------~~~~~~~---~~~~~~Sa~~~~gi~~~~~ 167 (222)
.....+.. ++.. ..+...+ +|++.+|+.+|+|++-+.+
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e 332 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE 332 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence 75322110 1111 1111122 5899999999999865443
No 336
>PRK12288 GTPase RsgA; Reviewed
Probab=98.79 E-value=4.4e-08 Score=81.29 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=66.4
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCeEEEEccccCC
Q 027503 82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV-NEEEGKILAETEGLYFMETSAMQNL 160 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (222)
..++|.+++|++++...++..+..|+..+.. .++|++||+||+|+...... ............+++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4678999999999888899999999775543 34889999999999753211 1112223334567899999999999
Q ss_pred CHHHHHHHHHHH
Q 027503 161 NVEDAFLQMINQ 172 (222)
Q Consensus 161 gi~~~~~~l~~~ 172 (222)
|++++++.+...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999888754
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=98.79 E-value=2.4e-08 Score=81.50 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=64.3
Q ss_pred hhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503 81 YYRGALGALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN 159 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (222)
...++|++++|+|+.++..+.. +..|+..+.. .++|+++|+||+|+.+... ............+++++.+||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988865444 4667666543 3489999999999963221 122233445567889999999999
Q ss_pred CCHHHHHHHHHH
Q 027503 160 LNVEDAFLQMIN 171 (222)
Q Consensus 160 ~gi~~~~~~l~~ 171 (222)
.|++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999987754
No 338
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=8e-08 Score=74.15 Aligned_cols=162 Identities=16% Similarity=0.201 Sum_probs=99.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeE--EEEEEECCeEEEEEEEeCCChhhhhh---hhHhhhcCCc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA--YRNIRVGDKLIKAQIWDTAGQERFRA---ITSSYYRGAL 86 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d 86 (222)
..+|+++|..-|||||+-+..+...-+... .-.+.. ...-.+.+.-+.|.+||+||+-.+.. -..+.++...
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneT---lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNET---LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCce---eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 467999999999999998887765533222 111111 11111223446899999999765432 3567789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCCCCC-CC-HHH-----HHHHHH----HcCCeEEE
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTHSRE-VN-EEE-----GKILAE----TEGLYFME 153 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~-~~-~~~-----~~~~~~----~~~~~~~~ 153 (222)
++|+|+|+.+. -.+.+..+...+.+.. ...+.+=|++.|.|...+.. +. ... ...++. ...+.|+.
T Consensus 104 ALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L 182 (347)
T KOG3887|consen 104 ALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL 182 (347)
T ss_pred eEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence 99999998763 2233343333333332 24477788899999754211 11 111 111111 12356788
Q ss_pred EccccCCCHHHHHHHHHHHHHHhhh
Q 027503 154 TSAMQNLNVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l~~~i~~~~~ 178 (222)
+|..+-. |-|.|..+++++..+..
T Consensus 183 TSIyDHS-IfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 183 TSIYDHS-IFEAFSKVVQKLIPQLP 206 (347)
T ss_pred eeecchH-HHHHHHHHHHHHhhhch
Confidence 8887654 88999999988876653
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.72 E-value=4.1e-08 Score=72.54 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=38.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (222)
..++|+++|.+|+|||||+|+|.+....... +..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999986653332 2333333333344433 468999999
No 340
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.72 E-value=3.6e-08 Score=71.58 Aligned_cols=54 Identities=22% Similarity=0.269 Sum_probs=39.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (222)
+++++|.+|+|||||+|+|.+....... ...+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999987764332 2233344444555544 5789999995
No 341
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.71 E-value=9.9e-08 Score=79.85 Aligned_cols=95 Identities=24% Similarity=0.267 Sum_probs=69.7
Q ss_pred hhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHH----HHHH
Q 027503 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI----LAET 146 (222)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~ 146 (222)
.+.|..+...+.+.++++++|+|+.+.. ..|...+.+... ..|+++|+||+|+.. +....+.... ++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 5678888888999999999999987643 224444444433 479999999999975 3333344443 3556
Q ss_pred cCC---eEEEEccccCCCHHHHHHHHHHH
Q 027503 147 EGL---YFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 147 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
.++ .++.+||++|.|++++|+.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 666 48999999999999999988654
No 342
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.70 E-value=4.3e-08 Score=73.51 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=40.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (222)
...++++++|.||+|||||+|+|.+....... +..+.+.....+.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 34589999999999999999999987653332 2233444444444443 578999999
No 343
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3.7e-07 Score=74.68 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=94.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCC-----------------------CcceeeEEEEEEECC--------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP-----------------------TIGVEFAYRNIRVGD-------- 58 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~-------- 58 (222)
-..++++++|.-.+|||||+-.|..++.+...-. ..+.+..-..+.+..
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 3689999999999999999988876665433211 111111111122211
Q ss_pred --eEEEEEEEeCCChhhhhhhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 59 --KLIKAQIWDTAGQERFRAITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 59 --~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
...-++++|.+|+..|...+...+. -.|..++|++++.+-.+.. +..+..+.... +|++|+++|+|+.+...
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL~---iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAALN---IPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHhC---CCeEEEEEeeccccchh
Confidence 1235789999999988765544443 4688899999987654322 33344444443 99999999999975322
Q ss_pred C------------------------CHHHHHHHHHH----cCCeEEEEccccCCCHHHH
Q 027503 135 V------------------------NEEEGKILAET----EGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 135 ~------------------------~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~~ 165 (222)
+ +..++-..+.+ .-+|+|.+|..+|+|++-+
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 1 11111111111 2258999999999998543
No 344
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.64 E-value=4.1e-06 Score=60.98 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=86.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCC-Chh-----------------
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTA-GQE----------------- 72 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~----------------- 72 (222)
..+||.+.|+|||||||++.++...-....+ .-.-+....+.-++....|.++|.. |..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~---kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY---KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc---eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4689999999999999999988754322111 1123445566677888888888887 311
Q ss_pred ----hhh----hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027503 73 ----RFR----AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA 144 (222)
Q Consensus 73 ----~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 144 (222)
.+. ......+..+|+ +++|---+.-+. ...+...+......+.|++.++.+.+- ....+.+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr-------~P~v~~ik 150 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR-------HPLVQRIK 150 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC-------ChHHHHhh
Confidence 011 122344455774 455654443222 245666777777777898888766552 12333444
Q ss_pred HHcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 145 ETEGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 145 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
...++.++ .|..|-+.++..+.+.+.
T Consensus 151 ~~~~v~v~----lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 151 KLGGVYVF----LTPENRNRILNEILSVLK 176 (179)
T ss_pred hcCCEEEE----EccchhhHHHHHHHHHhc
Confidence 44444443 444555577777776553
No 345
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.59 E-value=2.6e-07 Score=68.29 Aligned_cols=91 Identities=14% Similarity=0.016 Sum_probs=57.7
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN 159 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (222)
..+..+|++++|+|+.++..... ..+...+... ..+.|+++|+||+|+...... ......+........+.+||+.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC-HHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecccc
Confidence 45678999999999998743211 2222333322 334899999999999642211 11222222222233578999999
Q ss_pred CCHHHHHHHHHHHH
Q 027503 160 LNVEDAFLQMINQI 173 (222)
Q Consensus 160 ~gi~~~~~~l~~~i 173 (222)
.|++++++.+.+..
T Consensus 81 ~~~~~L~~~l~~~~ 94 (157)
T cd01858 81 FGKGSLIQLLRQFS 94 (157)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999998887654
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.56 E-value=2.2e-07 Score=69.71 Aligned_cols=59 Identities=24% Similarity=0.284 Sum_probs=41.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (222)
....++++++|.+|+|||||+|+|.+..+... .+..+.+.....+.++ ..+.++||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34568999999999999999999998776322 2222333444444443 35789999994
No 347
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.4e-07 Score=81.57 Aligned_cols=119 Identities=20% Similarity=0.212 Sum_probs=83.3
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC--------------CCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD--------------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
.+.+..-+|+++.+..-|||||+..|+...-... ...+.+++.....++.-...+.+.++|+||+-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 4556677899999999999999999875432111 12233444444555555556788999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503 73 RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129 (222)
Q Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 129 (222)
.|.........-+|++++++|+..+-.-+... .++..-.++...++|+||+|-
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~----vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYA----VLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHH----HHHHHHHccCceEEEEehhhh
Confidence 99999999999999999999998764322211 122221223557888999993
No 348
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.1e-06 Score=75.39 Aligned_cols=145 Identities=18% Similarity=0.136 Sum_probs=85.7
Q ss_pred CCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhh
Q 027503 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSY 81 (222)
Q Consensus 2 ~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 81 (222)
-++..++-++++-++|+|+||+|||||++.|...-.- .++ .++.-...-..++..++++..+|. + ..+ ....
T Consensus 59 vdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk----~ti-~~i~GPiTvvsgK~RRiTflEcp~-D-l~~-miDv 130 (1077)
T COG5192 59 VDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTI-DEIRGPITVVSGKTRRITFLECPS-D-LHQ-MIDV 130 (1077)
T ss_pred ccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHH----hhh-hccCCceEEeecceeEEEEEeChH-H-HHH-HHhH
Confidence 3455566678899999999999999999988753311 111 011111112356667899999993 2 222 2344
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH------HHHHHH-cCCeEEEE
Q 027503 82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG------KILAET-EGLYFMET 154 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~------~~~~~~-~~~~~~~~ 154 (222)
.+-+|.+++++|.+-+...+. ..++..+..+.. ..++-|+|+.|+-.... ....+ +.|... .|+.+|.+
T Consensus 131 aKIaDLVlLlIdgnfGfEMET-mEFLnil~~HGm--PrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFyl 206 (1077)
T COG5192 131 AKIADLVLLLIDGNFGFEMET-MEFLNILISHGM--PRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYL 206 (1077)
T ss_pred HHhhheeEEEeccccCceehH-HHHHHHHhhcCC--CceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEe
Confidence 567899999999886643333 234454444432 23566789999864221 11111 122222 46778888
Q ss_pred cccc
Q 027503 155 SAMQ 158 (222)
Q Consensus 155 Sa~~ 158 (222)
|-..
T Consensus 207 sgV~ 210 (1077)
T COG5192 207 SGVE 210 (1077)
T ss_pred cccc
Confidence 8653
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.53 E-value=2.8e-07 Score=74.45 Aligned_cols=58 Identities=28% Similarity=0.401 Sum_probs=41.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ 71 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (222)
...++++++|.+|+|||||+|+|.+....... +..+.+.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 35689999999999999999999987643332 2233333444455543 4689999996
No 350
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.53 E-value=6.1e-07 Score=66.13 Aligned_cols=85 Identities=16% Similarity=0.034 Sum_probs=56.1
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
|++++|+|+.++.+.... ++.. ......++|+++|+||+|+...... .+....+....+..++.+||+++.|+.++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 789999999887654431 2221 1222345899999999998642111 11112233334567899999999999999
Q ss_pred HHHHHHHHH
Q 027503 166 FLQMINQIH 174 (222)
Q Consensus 166 ~~~l~~~i~ 174 (222)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 998877654
No 351
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.52 E-value=3.8e-07 Score=74.10 Aligned_cols=59 Identities=31% Similarity=0.416 Sum_probs=41.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
...++++|+|.||||||||+|+|.+....... +..+.+.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 45689999999999999999999987653332 2333343344455543 57899999953
No 352
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.52 E-value=1e-05 Score=69.36 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=83.6
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCc-CCCCC------CC-----------------------------------
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDE-FRLDS------KP----------------------------------- 43 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~-~~~~~------~~----------------------------------- 43 (222)
....+..++|+++|+..+||||.+..+.... |+..+ .|
T Consensus 302 Ynt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~ 381 (980)
T KOG0447|consen 302 YNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRH 381 (980)
T ss_pred ccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHH
Confidence 3445678999999999999999998765322 11110 00
Q ss_pred ------------CcceeeEEEEEEECCeE-EEEEEEeCCCh-------------hhhhhhhHhhhcCCcEEEEEEeCCCh
Q 027503 44 ------------TIGVEFAYRNIRVGDKL-IKAQIWDTAGQ-------------ERFRAITSSYYRGALGALLVYDITRR 97 (222)
Q Consensus 44 ------------~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (222)
..++.......++.|.+ -++.++|.||- +....+..+++.+.+++|+|+--.+.
T Consensus 382 e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV 461 (980)
T KOG0447|consen 382 EIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 461 (980)
T ss_pred HHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence 01112222222232222 26789999992 23456788999999999999965443
Q ss_pred hhHHHHHHHHHH-HHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 027503 98 ATFENTKKWLRE-LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE 145 (222)
Q Consensus 98 ~s~~~~~~~~~~-l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 145 (222)
++... .... +......+...|+|+||+|+.+.+-.+...++....
T Consensus 462 DAERS---nVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 462 DAERS---IVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred chhhh---hHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 32222 2222 233345668899999999998865555555555443
No 353
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.1e-07 Score=78.64 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=91.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--------cCCCCC--------CCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD--------EFRLDS--------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (222)
.+.-+|.++.+..+||||...+++-- .+.... ....++++...-+.++.++.++.++||||+..
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 35567999999999999999987621 111111 22246677777788888889999999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|..-....++-.|+++.|||.+.+..-+.+..|.+. .+.++|.+.++||+|...
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhh
Confidence 998889999999999999999987655666667443 344589999999999764
No 354
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.49 E-value=2.8e-07 Score=70.28 Aligned_cols=56 Identities=23% Similarity=0.435 Sum_probs=38.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC-------CCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRL-------DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (222)
..+++++|.+|+|||||+|+|.+..... ......+.+.....+..+. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3579999999999999999999754311 1112223444444555543 468999999
No 355
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.49 E-value=6.5e-07 Score=74.35 Aligned_cols=83 Identities=17% Similarity=0.054 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhh---
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQER--- 73 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~--- 73 (222)
+++.|+|.|++|||||++.|.+... .....|..+.+.....+.+.+. +..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 4444455555555555555442 23678999999542
Q ss_pred ----hhhhhHhhhcCCcEEEEEEeCC
Q 027503 74 ----FRAITSSYYRGALGALLVYDIT 95 (222)
Q Consensus 74 ----~~~~~~~~~~~~d~~i~v~d~~ 95 (222)
...-....++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2224556788999999999974
No 356
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.49 E-value=4.6e-07 Score=66.78 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=39.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (222)
...+++++|.+++|||||+|+|.+.... ...++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4678999999999999999999976532 2334444443333333433 588999999
No 357
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.46 E-value=2.2e-07 Score=68.43 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCC------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLD------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF 74 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (222)
-.++|+|++|||||||+|.|.+...... .......+.....+.+++. ..++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 3589999999999999999998642211 1111112222334445442 369999997653
No 358
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.45 E-value=1.5e-06 Score=82.95 Aligned_cols=113 Identities=25% Similarity=0.267 Sum_probs=68.7
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCC----CCCccee-eEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHhh
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEFRLDS----KPTIGVE-FAYRNIRVGDKLIKAQIWDTAGQE--------RFRAITSSY 81 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~ 81 (222)
.+|+|++|+||||+++.- +-.++-.. ..+.+.. .......+.+ .-.++||+|.- .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 689999999999999885 33443211 1111111 1112233333 34699999921 112233333
Q ss_pred h---------cCCcEEEEEEeCCChh-----hH----HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 82 Y---------RGALGALLVYDITRRA-----TF----ENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 82 ~---------~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
+ +..|++|+++|+.+.- .. ..++..+.++.......+||+||+||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 2 3579999999987532 11 2344555666666677899999999999874
No 359
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.45 E-value=2.9e-06 Score=66.39 Aligned_cols=87 Identities=16% Similarity=0.038 Sum_probs=53.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCCCC---CCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD--EFRLDSK---PTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR------AIT 78 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~ 78 (222)
....-|+|+|++++|||+|+|.|++. .|..... .|.++-.....+.. +....+.++||+|..... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 34566999999999999999999998 6543321 22222222222211 223578999999965321 122
Q ss_pred HhhhcC--CcEEEEEEeCCCh
Q 027503 79 SSYYRG--ALGALLVYDITRR 97 (222)
Q Consensus 79 ~~~~~~--~d~~i~v~d~~~~ 97 (222)
...+.. ++++|+..+.+..
T Consensus 84 ~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 84 LFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHhCEEEEeccCccc
Confidence 233333 7888887776644
No 360
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.43 E-value=4.8e-07 Score=73.10 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=64.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC---------------CeEEEEEEEeCCChh---
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG---------------DKLIKAQIWDTAGQE--- 72 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~Dt~G~~--- 72 (222)
..+++.|+|.|+||||||+|.|......+...|..+++-....+.+. ..+..++++|.+|..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 56899999999999999999999988877777777777665555443 224578999999843
Q ss_pred ----hhhhhhHhhhcCCcEEEEEEeCC
Q 027503 73 ----RFRAITSSYYRGALGALLVYDIT 95 (222)
Q Consensus 73 ----~~~~~~~~~~~~~d~~i~v~d~~ 95 (222)
....-..+.++.+|+++-|+++-
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 23334556778999999998754
No 361
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.41 E-value=5.8e-07 Score=74.06 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=45.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
..++++|+|.|+||||||||+|.+...... .+..|.+.....+..+. .+.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCC---CeEEecCCCcC
Confidence 357899999999999999999999876333 34446666666677765 37899999954
No 362
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8e-06 Score=71.57 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=70.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcc-------------------------------------------e
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIG-------------------------------------------V 47 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~-------------------------------------------~ 47 (222)
...||+|.|..++||||++|+++...+-+......+ .
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 467999999999999999999886554333211100 0
Q ss_pred eeEEEEEEECCeE-----EEEEEEeCCChh---hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe
Q 027503 48 EFAYRNIRVGDKL-----IKAQIWDTAGQE---RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA 119 (222)
Q Consensus 48 ~~~~~~~~~~~~~-----~~~~l~Dt~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p 119 (222)
......+..++.. -.+.++|.||.+ ....-...+...+|++|+|..+.+..+..+.. ++... ...+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~v---s~~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKV---SEEKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHh---hccCCc
Confidence 0000111111111 156789999955 34444567788999999999998765544422 22222 222344
Q ss_pred EEEEEeCCCCCCC
Q 027503 120 IVLVGNKSDLTHS 132 (222)
Q Consensus 120 ~ivv~nK~Dl~~~ 132 (222)
+.|+.||.|....
T Consensus 264 iFIlnnkwDasas 276 (749)
T KOG0448|consen 264 IFILNNKWDASAS 276 (749)
T ss_pred EEEEechhhhhcc
Confidence 5666788897653
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.38 E-value=1.2e-06 Score=64.50 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=38.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (222)
....+++++|.+|+|||||+|.|.+... .....+..+.... .+..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence 4568899999999999999999998653 2222333333333 23333 2578999999
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.38 E-value=1.4e-06 Score=63.13 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=52.0
Q ss_pred HhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503 79 SSYYRGALGALLVYDITRRATFE--NTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA 156 (222)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (222)
...+..+|++++|+|+.++.+.. .+..|+. ... .++|+++|+||+|+..... ......+....+..++.+||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVK---EVD-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHH---hcc-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 45678999999999999876544 3333333 221 3489999999999864221 12333445556678999999
Q ss_pred ccCCC
Q 027503 157 MQNLN 161 (222)
Q Consensus 157 ~~~~g 161 (222)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98764
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.34 E-value=2.1e-06 Score=64.35 Aligned_cols=91 Identities=14% Similarity=0.038 Sum_probs=60.4
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027503 75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET 154 (222)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (222)
.......+.++|++++|+|+.++....+. .+...+ .+.|+++|+||+|+.+... .....++....+..++.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34456778899999999999876543221 121211 1368999999999864211 111112223344578999
Q ss_pred ccccCCCHHHHHHHHHHHH
Q 027503 155 SAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 155 Sa~~~~gi~~~~~~l~~~i 173 (222)
|++++.|++++.+.+...+
T Consensus 82 Sa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ECCCcccHHHHHHHHHHHH
Confidence 9999999999998887765
No 366
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.33 E-value=5.5e-06 Score=66.93 Aligned_cols=100 Identities=14% Similarity=0.056 Sum_probs=64.7
Q ss_pred CChh-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc
Q 027503 69 AGQE-RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE 147 (222)
Q Consensus 69 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (222)
||+- .........+..+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+.+.... .....+....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHHc
Confidence 5543 2233456778899999999999877543331 111112 14799999999998642111 1111122334
Q ss_pred CCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503 148 GLYFMETSAMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 148 ~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 176 (222)
+.+++.+|++++.|+.++.+.+.+.+.+.
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 56789999999999999998887776543
No 367
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=3.3e-06 Score=68.40 Aligned_cols=144 Identities=20% Similarity=0.162 Sum_probs=93.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC-------c---CCCCC----CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD-------E---FRLDS----KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~-------~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (222)
+-++|.-+|+..-|||||-.++..- . +.+-. ....++++...++.++-....+-=.|+||+..|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 5688999999999999998876521 1 11111 12245566666666665556677889999988876
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC---CCHHHHHHHHHHcC-----
Q 027503 77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE---VNEEEGKILAETEG----- 148 (222)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~----- 148 (222)
....-....|+.|+|++++|+. ....+..+...+...- ..++|++||.|+.++.+ .-+-+.+++..+++
T Consensus 133 NMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~ 209 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDN 209 (449)
T ss_pred HhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 6666666789999999999863 2232333333333331 34667799999985332 22234566777766
Q ss_pred CeEEEEccc
Q 027503 149 LYFMETSAM 157 (222)
Q Consensus 149 ~~~~~~Sa~ 157 (222)
+|++.-||.
T Consensus 210 ~PvI~GSAL 218 (449)
T KOG0460|consen 210 TPVIRGSAL 218 (449)
T ss_pred CCeeecchh
Confidence 578887765
No 368
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.31 E-value=5e-06 Score=65.05 Aligned_cols=90 Identities=19% Similarity=0.126 Sum_probs=58.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYY 82 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~ 82 (222)
....+|.++|-|.+||||++..|.+...+.......+.......+.+.+ -++.+.|.||.-+ .........
T Consensus 57 tg~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviava 134 (358)
T KOG1487|consen 57 TGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVA 134 (358)
T ss_pred ecceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEe
Confidence 3456899999999999999999987654322222222222333344444 5789999999542 122344556
Q ss_pred cCCcEEEEEEeCCChhhHH
Q 027503 83 RGALGALLVYDITRRATFE 101 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~ 101 (222)
+.++.+++|.|+..|-+..
T Consensus 135 rtcnli~~vld~~kp~~hk 153 (358)
T KOG1487|consen 135 RTCNLIFIVLDVLKPLSHK 153 (358)
T ss_pred ecccEEEEEeeccCcccHH
Confidence 7789999999987765433
No 369
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=6.5e-07 Score=71.45 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=95.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcC---CCCCCCCcceeeEEEE---EEE---------------------------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEF---RLDSKPTIGVEFAYRN---IRV--------------------------- 56 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~---~~~--------------------------- 56 (222)
+-.++|.-+|+..-||||+++++.+-.. -......+++...+.+ +..
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 4578999999999999999998765321 0000111111110000 000
Q ss_pred --CCe---EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCC
Q 027503 57 --GDK---LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITR----RATFENTKKWLRELREFCSSCMAIVLVGNKS 127 (222)
Q Consensus 57 --~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~ 127 (222)
.+. -..+.++|+||++-..+....-..-.|++++++..+. |++-+.+.. -++-.+ ..++++-||+
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L----khiiilQNKi 189 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL----KHIIILQNKI 189 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh----ceEEEEechh
Confidence 010 1367899999998765544444444577888887664 334444332 111122 4688899999
Q ss_pred CCCCCCCC--CHHHHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 128 DLTHSREV--NEEEGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 128 Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
|+..+... ..+....|... .+.|++++||.-..+++-+.++++..+-
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 99864321 12233444443 3579999999999999999999887753
No 370
>PRK01889 GTPase RsgA; Reviewed
Probab=98.28 E-value=3.6e-06 Score=70.38 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=58.8
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccccCC
Q 027503 82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAE-TEGLYFMETSAMQNL 160 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 160 (222)
..++|.+++|++++.+.....+..++..+.... +|.+||+||+||.+.. .+....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~---i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESG---AEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcC---CCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 578999999999975445455666665555543 6778899999997531 112222222 356789999999999
Q ss_pred CHHHHHHHHH
Q 027503 161 NVEDAFLQMI 170 (222)
Q Consensus 161 gi~~~~~~l~ 170 (222)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888774
No 371
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.28 E-value=6.2e-06 Score=64.61 Aligned_cols=120 Identities=14% Similarity=0.205 Sum_probs=77.3
Q ss_pred EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHHc-CCCCeEEEEEeCCC
Q 027503 60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA----------TFENTKKWLRELREFC-SSCMAIVLVGNKSD 128 (222)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D 128 (222)
.+.|+.+|.+|+...+.-|...+.+.-++|+|+..++-. .+.+.-.++..++... -.-+.+|+++||-|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 367899999999988888999999999999999877421 1122222333333322 12367899999999
Q ss_pred CCCCC----------------------------CCCHH--HHHHHHHH-------------cCCeEEEEccccCCCHHHH
Q 027503 129 LTHSR----------------------------EVNEE--EGKILAET-------------EGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 129 l~~~~----------------------------~~~~~--~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~~ 165 (222)
+..+. ..... .++-|... +-+.+..+-|.+.++|+.+
T Consensus 281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV 360 (379)
T KOG0099|consen 281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 360 (379)
T ss_pred HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence 84210 00011 11111111 1255677889999999999
Q ss_pred HHHHHHHHHHhhhh
Q 027503 166 FLQMINQIHQTTIQ 179 (222)
Q Consensus 166 ~~~l~~~i~~~~~~ 179 (222)
|+...+-+..++.+
T Consensus 361 FnDcrdiIqr~hlr 374 (379)
T KOG0099|consen 361 FNDCRDIIQRMHLR 374 (379)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888777766543
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.26 E-value=8.3e-06 Score=67.06 Aligned_cols=94 Identities=20% Similarity=0.126 Sum_probs=54.9
Q ss_pred EEEEEEeCCChhhhh--------hhhH---hh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503 61 IKAQIWDTAGQERFR--------AITS---SY-YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD 128 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~--------~~~~---~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 128 (222)
+.+.++||||..... .+.. .. -...+..++|+|++.+. ..+.. ...+.... .+.-+|+||.|
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~---~~~giIlTKlD 270 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV---GLTGIILTKLD 270 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC---CCCEEEEECCC
Confidence 578999999954321 1111 11 12467889999998643 22221 12222211 24467889999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
.... .-.+.......++|+..++ +|++++++-
T Consensus 271 ~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 271 GTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 5432 2234455566689988887 788886654
No 373
>PRK13796 GTPase YqeH; Provisional
Probab=98.26 E-value=8.8e-06 Score=68.30 Aligned_cols=92 Identities=23% Similarity=0.295 Sum_probs=60.9
Q ss_pred hhhhhhHhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH----HHHc
Q 027503 73 RFRAITSSYYRGAL-GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL----AETE 147 (222)
Q Consensus 73 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~ 147 (222)
.|...... +..++ .+++|+|+.+.. ..|...+.+... +.|+++|+||+|+.. .....+....+ +...
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence 44443333 34444 889999987743 224444544433 478999999999965 23333333333 4555
Q ss_pred CC---eEEEEccccCCCHHHHHHHHHHH
Q 027503 148 GL---YFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 148 ~~---~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
++ .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999988664
No 374
>PRK12288 GTPase RsgA; Reviewed
Probab=98.25 E-value=2.4e-06 Score=71.01 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=35.9
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCC-CC-----CcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEFRLDS-KP-----TIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (222)
++|+|.+|||||||+|+|++....... .+ ...++.....+.+.+. ..++||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 789999999999999999976532211 11 1112222233344332 2599999976543
No 375
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=8.7e-06 Score=63.40 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=97.4
Q ss_pred eeEEEEEcCCCC--ChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 12 LFKAVMIGDSAV--GKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 12 ~~kI~llG~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
..-++++|..|+ ||.+|+.+|....|.........+.+...++.-......+.+.-.+-.+++.-..........+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 345789999998 999999999887776554333333333222222111122233222222222222233334557899
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCC--------------C--------------------
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSR--------------E-------------------- 134 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~--------------~-------------------- 134 (222)
++||.+....+..+..|+.--.... .- .+.++||+|....- .
T Consensus 84 mvfdlse~s~l~alqdwl~htdins---fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs 160 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDINS---FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS 160 (418)
T ss_pred EEEeccchhhhHHHHhhcccccccc---chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence 9999999999999999975321110 11 24558888854110 0
Q ss_pred ----------CCHHHHHHHHHHcCCeEEEEccc------------cCCCHHHHHHHHHHHHHHhhh
Q 027503 135 ----------VNEEEGKILAETEGLYFMETSAM------------QNLNVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 135 ----------~~~~~~~~~~~~~~~~~~~~Sa~------------~~~gi~~~~~~l~~~i~~~~~ 178 (222)
.....+.+|+.++++.|++.++. +..|+..+|.++-..++....
T Consensus 161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmi 226 (418)
T KOG4273|consen 161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMI 226 (418)
T ss_pred cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccce
Confidence 11223467888899999998884 245788888777766665443
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.25 E-value=7.3e-06 Score=60.63 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
-+++.|..|+|||||++.++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3689999999999999998865
No 377
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.25 E-value=2e-05 Score=66.97 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=37.6
Q ss_pred EEEEEEEeCCChhhhhh-h---hHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 60 LIKAQIWDTAGQERFRA-I---TSS--YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
.+.+.|+||+|...... + ... .....|-+++|+|+.-+....+ ....+.... .+.-+|+||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~~---~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDSV---DVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhcc---CCcEEEEECccCC
Confidence 35789999999543221 1 111 1235688999999876532222 222232221 3567888999964
No 378
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.24 E-value=7.1e-06 Score=67.42 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=88.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------------------CCCccee-----eEEEEEEE-----------
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------------------KPTIGVE-----FAYRNIRV----------- 56 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------------------~~~~~~~-----~~~~~~~~----------- 56 (222)
..++|+++|...+|||||+-.|.+.+..... ...++.+ ..-..+..
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 6899999999999999999776654432211 1111111 11000000
Q ss_pred ---CCeEEEEEEEeCCChhhhhh--hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 57 ---GDKLIKAQIWDTAGQERFRA--ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 57 ---~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
++...-++|+|.+|++.|-. ...+.-+..|...+++-++..- .-.....+.....+ .+|+++|++|+|+-.
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALaL---~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALAL---HVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhhh---cCcEEEEEEeeccCc
Confidence 11123578999999998754 3344445678878887766531 01111122222222 289999999999864
Q ss_pred CCCCCHHHHH---HH--------------------------HHHcCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 132 SREVNEEEGK---IL--------------------------AETEGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 132 ~~~~~~~~~~---~~--------------------------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.+.. .+-.+ .+ ..+.-+|+|.+|..+|.++.- +..+...+
T Consensus 288 ANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNll 356 (641)
T KOG0463|consen 288 ANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLL 356 (641)
T ss_pred HHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhc
Confidence 3322 11111 11 122236899999999999853 33444433
No 379
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.22 E-value=1e-05 Score=65.69 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=65.5
Q ss_pred CCChh-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027503 68 TAGQE-RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET 146 (222)
Q Consensus 68 t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (222)
.||+- .........+..+|++++|+|+.++.+... ..+...+ . +.|+++|+||+|+.+... .+....+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~-~~l~~~~----~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN-PMIDKII----G-NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC-hhHHHHh----C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 46643 222345667889999999999987754332 1111111 1 489999999999864211 1111222234
Q ss_pred cCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503 147 EGLYFMETSAMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 147 ~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 176 (222)
.+.+++.+|+.++.|+.++.+.+.+.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999998887776543
No 380
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.22 E-value=3.5e-06 Score=64.84 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=75.2
Q ss_pred EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHHcC-CCCeEEEEEeCCC
Q 027503 60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA----------TFENTKKWLRELREFCS-SCMAIVLVGNKSD 128 (222)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D 128 (222)
.+.|.+.|.+|+..-+.-|.+.+.+.-.+++++.++.-+ ..++-...+.-+..+.- ...++|+++||.|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 357789999998887888888888777777766654321 12222222333322221 3478999999999
Q ss_pred CCCCCC----------------CCHHHHHHHHHHc----C------CeEEEEccccCCCHHHHHHHHHHHHHHhhh
Q 027503 129 LTHSRE----------------VNEEEGKILAETE----G------LYFMETSAMQNLNVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 129 l~~~~~----------------~~~~~~~~~~~~~----~------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~ 178 (222)
+.++.. .+.+.+++|.... + +.-..+-|.+.++|+-+|..+.+.++....
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 875322 2233445554432 1 223456788999999999988888876543
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=98.21 E-value=2.6e-06 Score=70.38 Aligned_cols=96 Identities=17% Similarity=0.016 Sum_probs=55.2
Q ss_pred EEEEEEeCCChhhhhh----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA----ITSSY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
..+.|+||+|...... -...+ ....|.+++|+|+..+... ......+.... .+--+|+||.|......
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~---~~~a~~f~~~~---~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDA---VEQAREFNEAV---GIDGVILTKVDADAKGG 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhH---HHHHHHHHhcC---CCCEEEEeeecCCCCcc
Confidence 4689999999653211 11111 2257889999998765321 11122222211 23467789999753222
Q ss_pred CCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 135 VNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
.+...+...+.|+..++ +|++++++...
T Consensus 297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 297 ----AALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ----HHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 33344455688888886 78988776543
No 382
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.21 E-value=8.7e-06 Score=65.54 Aligned_cols=94 Identities=18% Similarity=0.032 Sum_probs=55.4
Q ss_pred EEEEEEeCCChhhhhhhhH-------hhh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503 61 IKAQIWDTAGQERFRAITS-------SYY-----RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD 128 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 128 (222)
+.+.++||||........- ... ...|.+++|+|++... +.+. ....+.+.. -+.-+|+||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC---CCCEEEEEccC
Confidence 5789999999653222111 111 2378999999997542 2222 222222222 23567789999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 129 LTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
..... -.+.......++|+..++ +|++++++-
T Consensus 229 e~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 229 GTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 65422 233444556688888886 788776654
No 383
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.20 E-value=5.4e-05 Score=63.49 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=82.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCC----------------CCCCCCcc---eee-----EEEEEEE-CCeEEEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFR----------------LDSKPTIG---VEF-----AYRNIRV-GDKLIKA 63 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~----------------~~~~~~~~---~~~-----~~~~~~~-~~~~~~~ 63 (222)
....+=|.|+|+.-+|||||+++|....+. +.+.+..+ .+- .-..+.+ ++..+++
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV 93 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV 93 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence 345677999999999999999998642221 11111111 110 1123334 5667899
Q ss_pred EEEeCCChh--------h-----------------hhhh----hHhhhc--CCcEEEEEEeCC--C--hhhHHHHHHHHH
Q 027503 64 QIWDTAGQE--------R-----------------FRAI----TSSYYR--GALGALLVYDIT--R--RATFENTKKWLR 108 (222)
Q Consensus 64 ~l~Dt~G~~--------~-----------------~~~~----~~~~~~--~~d~~i~v~d~~--~--~~s~~~~~~~~~ 108 (222)
+++|+.|.- + |... +...+. ..-++++.-|-+ + ++.|..+. -.
T Consensus 94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAE--er 171 (492)
T PF09547_consen 94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAE--ER 171 (492)
T ss_pred EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHH--HH
Confidence 999998811 0 0000 001111 223455555543 2 23443332 22
Q ss_pred HHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503 109 ELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ 158 (222)
Q Consensus 109 ~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (222)
.+.++..-++|++|++|-.+- ...-..+++.++...++++++.+++..
T Consensus 172 vI~ELk~igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 172 VIEELKEIGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHhCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence 334444445999999998873 234456777888888999988887653
No 384
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.19 E-value=3e-06 Score=68.13 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=38.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc------CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE------FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (222)
-.+++|.+|||||||+|+|.... ...........+....-+.+++.+ .++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 47899999999999999998632 222222333334444555554333 599999976543
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.17 E-value=4.5e-06 Score=66.22 Aligned_cols=56 Identities=21% Similarity=0.172 Sum_probs=34.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC------CCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDS------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (222)
.++|+|++|||||||+|+|.+....... .....++.....+.+.+ -.++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence 6899999999999999999975432211 11111222222233333 26999999654
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=98.15 E-value=3.9e-06 Score=69.86 Aligned_cols=56 Identities=23% Similarity=0.182 Sum_probs=34.9
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCC-CCC-----cceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEFRLDS-KPT-----IGVEFAYRNIRVGDKLIKAQIWDTAGQER 73 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (222)
++|+|++|||||||+|.|++....... .+. ..++.....+.+.+.. .++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 899999999999999999975432221 111 1122222334443322 6999999653
No 387
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=1.3e-05 Score=63.41 Aligned_cols=61 Identities=21% Similarity=0.462 Sum_probs=46.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----CCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS----KPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (222)
...|+|+-+|..|.|||||+..|++..|.... .|.+......+.+.-.+..++++++||.|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 35799999999999999999999998875443 33333334444455577788999999998
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.14 E-value=5.3e-06 Score=69.52 Aligned_cols=56 Identities=23% Similarity=0.417 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcC------CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEF------RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (222)
.+++|+|.+|||||||+|+|++... .....| +.+.....+.+++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p--gtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP--GTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC--CeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 4899999999999999999997542 122223 3333344455533 357999999653
No 389
>PRK13796 GTPase YqeH; Provisional
Probab=98.10 E-value=5.1e-06 Score=69.73 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC----CCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRL----DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
.+++|+|.+|||||||+|+|+...... ...+..+++.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 479999999999999999998643111 11122333444444555442 3799999964
No 390
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.04 E-value=4e-05 Score=61.72 Aligned_cols=94 Identities=17% Similarity=0.066 Sum_probs=66.9
Q ss_pred hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027503 76 AITSSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET 154 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (222)
.+.+....+.|-+++++++.+|+ +...+.+++-.+.... +..+|++||+||.+................+.+++.+
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~g---i~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGG---IEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcC---CcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 34455555678888888888875 5555565555444443 5667779999998754433334556667789999999
Q ss_pred ccccCCCHHHHHHHHHHH
Q 027503 155 SAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 155 Sa~~~~gi~~~~~~l~~~ 172 (222)
|++++.|+.++.+.+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999998877654
No 391
>PRK13695 putative NTPase; Provisional
Probab=98.02 E-value=0.00017 Score=54.10 Aligned_cols=82 Identities=11% Similarity=0.150 Sum_probs=45.3
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503 79 SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ 158 (222)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (222)
...+..+++ +++|--.+..... ..+...+......+.|++++.+|... ......+....+..+++++.
T Consensus 91 ~~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~~-- 158 (174)
T PRK13695 91 ERALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELTP-- 158 (174)
T ss_pred HhccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEcc--
Confidence 344556775 6777311111111 23445555544556899999887432 23344555666777777744
Q ss_pred CCCHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQI 173 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i 173 (222)
++-+++.+.+.+.+
T Consensus 159 -~~r~~~~~~~~~~~ 172 (174)
T PRK13695 159 -ENRDSLPFEILNRL 172 (174)
T ss_pred -hhhhhHHHHHHHHH
Confidence 45557777776654
No 392
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=3.2e-05 Score=72.72 Aligned_cols=111 Identities=26% Similarity=0.250 Sum_probs=65.2
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCC--C----CCCcceeeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHh
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEFRLD--S----KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE--------RFRAITSS 80 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~ 80 (222)
-+|+|++|+||||++..- +..|+-. . ....+ ......-+.+ .-.++||.|.. .....|..
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g--T~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG--TRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC--CcccCccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence 479999999999998652 2222211 1 11111 1111122233 44688998821 22234443
Q ss_pred h---------hcCCcEEEEEEeCCChh-----hH----HHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 81 Y---------YRGALGALLVYDITRRA-----TF----ENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 81 ~---------~~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
+ .+..|++|+.+|+.+.- .- ..++.-++++........||+|++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3 34679999999987531 11 1233345556666677899999999999875
No 393
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.8e-05 Score=68.65 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=82.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-----CCC-----------CCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-----LDS-----------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (222)
...-+|.+.-+-.+||||+-++.+-.... ... ....++++...-..+.+....+.++||||+..
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 35567888999999999999986532110 000 11123344433344444467899999999998
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503 74 FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132 (222)
Q Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 132 (222)
|.--....++-.|+.+++++...+..-+....|.+ +.++. +|.+.++||+|-...
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry~---vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRYN---VPRICFINKMDRMGA 171 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhcC---CCeEEEEehhhhcCC
Confidence 88878888999999999999887654444455644 34444 899999999996543
No 394
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.98 E-value=9.8e-06 Score=68.93 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=44.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
.+.|.++|-|||||||+||.|.|...-..+ .|.|-+-...++.+.. .+.|.|+||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 689999999999999999999998754333 5555555566666654 57899999954
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=8.9e-05 Score=62.07 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCCCcceeeE------------------EEEEEE---------CCeEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRL---DSKPTIGVEFA------------------YRNIRV---------GDKLI 61 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~---------~~~~~ 61 (222)
.-.++|+|++|+||||++..|...-... ......+.+.+ ...+.. .-...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3468899999999999999986532110 01000111110 000100 00124
Q ss_pred EEEEEeCCChhhhhhh---hHhhh---cCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCC-----CCeEEEEEeCCCC
Q 027503 62 KAQIWDTAGQERFRAI---TSSYY---RGALGALLVYDITRRA-TFENTKKWLRELREFCSS-----CMAIVLVGNKSDL 129 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~~~---~~~~~---~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~-----~~p~ivv~nK~Dl 129 (222)
.+.++||+|....... ....+ ...+-.++|++++... ....+ +..+...... .-+--+|+||.|-
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---VQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---HHHHHHhhcccccccCCCCEEEEecccc
Confidence 7889999995533221 11112 2334568888887642 32332 2222222110 0123567799995
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027503 130 THSREVNEEEGKILAETEGLYFMETS 155 (222)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (222)
.. ..-.+..+....+.|+.+++
T Consensus 294 t~----~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 294 AS----NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred CC----CccHHHHHHHHHCcCeEEEe
Confidence 43 23345566666777766663
No 396
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.97 E-value=1.9e-05 Score=58.96 Aligned_cols=136 Identities=16% Similarity=0.222 Sum_probs=70.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeC-CCh---------------------
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDT-AGQ--------------------- 71 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~--------------------- 71 (222)
||+|.|++|+|||||+++++..-... ..+. .-+....+.-++....|.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987533111 1111 1223333444555556666666 331
Q ss_pred -hhhhh----hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027503 72 -ERFRA----ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET 146 (222)
Q Consensus 72 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (222)
+.+.. .....+..+| ++++|---+.-+ ....|...+....+.+.|++.++.+.. .......+...
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~~ 147 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKRR 147 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHhC
Confidence 11111 1122224556 677774433111 123455666666666689888876552 11234566667
Q ss_pred cCCeEEEEccccCCCH
Q 027503 147 EGLYFMETSAMQNLNV 162 (222)
Q Consensus 147 ~~~~~~~~Sa~~~~gi 162 (222)
.++.+++++..+.+.+
T Consensus 148 ~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 148 PDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTSEEEE--TTTCCCH
T ss_pred CCcEEEEeChhHHhhH
Confidence 7789999987776655
No 397
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.0003 Score=61.21 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=49.0
Q ss_pred EEEEEEeCCChhhhhhhhH---hhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRAITS---SYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~---~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (222)
..+.|+||+|......... ..+. .....++|++... +..++...+..+... .+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~---- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG---- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc----
Confidence 5789999999543221100 0011 1234566777654 233433333333322 45678899999532
Q ss_pred CHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 136 NEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..-.+.......++++.+++ +|..|
T Consensus 499 ~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 23455566667788877763 45555
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.90 E-value=2.5e-05 Score=63.47 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCC-C-----CCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDS-K-----PTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF 74 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (222)
-.++++|++|+|||||+|.|.+....... . .....+.....+...+. ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 46999999999999999999976543221 1 11112222333444322 258999997654
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.89 E-value=0.00021 Score=53.52 Aligned_cols=83 Identities=16% Similarity=0.040 Sum_probs=44.4
Q ss_pred EEEEEEeCCChhhhh----hhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFR----AITSSY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
..+.++|++|..... .....+ ....+.+++|++...... ...+...+..... ...+|.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc-
Confidence 457889999964221 111111 134899999999865432 2223333332222 246677999965422
Q ss_pred CCHHHHHHHHHHcCCeEEE
Q 027503 135 VNEEEGKILAETEGLYFME 153 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ 153 (222)
......+...++|+..
T Consensus 156 ---g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 ---GAALSIRAVTGKPIKF 171 (173)
T ss_pred ---chhhhhHHHHCcCeEe
Confidence 2223355556666543
No 400
>PRK00098 GTPase RsgA; Reviewed
Probab=97.88 E-value=2.6e-05 Score=63.75 Aligned_cols=57 Identities=25% Similarity=0.198 Sum_probs=35.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC-CCC---c--ceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDS-KPT---I--GVEFAYRNIRVGDKLIKAQIWDTAGQER 73 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~---~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (222)
.++|+|++|+|||||+|.|.+....... .+. . ..+.....+..++. ..++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 5899999999999999999876533221 110 0 11122233334332 37899999653
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=5.1e-05 Score=63.62 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=50.1
Q ss_pred EEEEEEeCCChhhhhh----hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA----ITSSYY--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
..+.|+||+|...... -...++ ...+.+++|+|++... .++..+...+.. . ..--+|+||.|-...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---~-~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---I-HIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---C-CCCEEEEEcccCCCC--
Confidence 4789999999643211 112222 2356788888875432 233333333332 2 223567899995432
Q ss_pred CCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503 135 VNEEEGKILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
.-.+...+...++|+..+ .+|++|.+
T Consensus 393 --~G~iLni~~~~~lPIsyi--t~GQ~VPe 418 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLM--TDGQDVKK 418 (436)
T ss_pred --ccHHHHHHHHHCcCEEEE--eCCCCCCc
Confidence 234456666677776666 34444443
No 402
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.82 E-value=9.7e-05 Score=54.00 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=36.6
Q ss_pred EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503 60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD 128 (222)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 128 (222)
.+.+.|+||+|... ....++..+|-++++...+-.+.+.-+. + ..+. .--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k-~-~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK-A-GIME------IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh-h-hHhh------hcCEEEEeCCC
Confidence 35788999988542 2235888999999999887433333222 1 2222 22377889997
No 403
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.81 E-value=0.00029 Score=53.94 Aligned_cols=90 Identities=19% Similarity=0.023 Sum_probs=49.6
Q ss_pred EEEEEEeCCChhhhhh----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA----ITSSY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
..+.++||+|...... ....+ ....+-+++|++++.... .+.. ...+..... +--+|+||.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~-~~~~~~~~~---~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQ-ALAFYEAFG---IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHH-HHHHHHHSS---TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHH-HHHHhhccc---CceEEEEeecCCC---
Confidence 4589999999543221 11111 125778899999886532 3222 222223221 2355689999533
Q ss_pred CCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 135 VNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..-....+....+.|+-.++ +|++|
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V 179 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYIT--TGQRV 179 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEE--SSSST
T ss_pred -CcccceeHHHHhCCCeEEEE--CCCCh
Confidence 22445667777888876664 44444
No 404
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00018 Score=61.17 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=71.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC---CC-----CCC---------------cceeeEEEE--EE-----ECCeEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRL---DS-----KPT---------------IGVEFAYRN--IR-----VGDKLI 61 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~---~~-----~~~---------------~~~~~~~~~--~~-----~~~~~~ 61 (222)
.-.|+|+|+.|+||||++..|.+..... .. ..+ .++...... .. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 4579999999999999999876531100 00 000 000000000 00 000113
Q ss_pred EEEEEeCCChhhhh----hhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503 62 KAQIWDTAGQERFR----AITSSYY--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (222)
.+.++||+|..... .....+. ...+-.++|+|++... ..+..+...+ ... -+--+|+||.|-..
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f---~~~-~~~~~I~TKlDEt~---- 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAY---QGH-GIHGCIITKVDEAA---- 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHh---cCC-CCCEEEEEeeeCCC----
Confidence 67899999954321 1122221 1234577888887432 2333332222 222 23356789999543
Q ss_pred CHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 136 NEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..-.+..+....++++..+ .+|.+|
T Consensus 341 ~~G~~l~~~~~~~lPi~yv--t~Gq~V 365 (420)
T PRK14721 341 SLGIALDAVIRRKLVLHYV--TNGQKV 365 (420)
T ss_pred CccHHHHHHHHhCCCEEEE--ECCCCc
Confidence 2334556677778887776 456666
No 405
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.80 E-value=0.00069 Score=55.81 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=73.6
Q ss_pred EEEEcCCCCChHHHHHHHhhCcC-----------CCCCCCC-cce-eeEEEEEEECCe----------------------
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEF-----------RLDSKPT-IGV-EFAYRNIRVGDK---------------------- 59 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~-----------~~~~~~~-~~~-~~~~~~~~~~~~---------------------- 59 (222)
.+|-|-=|||||||++.++...- .+..... ... ......+...+.
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 57788999999999999986432 1111111 000 000011111111
Q ss_pred EEEEEEEeCCChhhhhhhhHhhh--------cCCcEEEEEEeCCChhhHHH-HHH-HHHHHHHHcCCCCeEEEEEeCCCC
Q 027503 60 LIKAQIWDTAGQERFRAITSSYY--------RGALGALLVYDITRRATFEN-TKK-WLRELREFCSSCMAIVLVGNKSDL 129 (222)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~-~~~~l~~~~~~~~p~ivv~nK~Dl 129 (222)
.....++.+.|...-......+. -..|+++-|+|+.+-..... ... ...++.. .=+||+||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccC
Confidence 13456778877543322222221 24577999999876433222 222 2222222 12788999999
Q ss_pred CCCCCCCHHHHHHHHHHc--CCeEEEEccccCCCHHHHH
Q 027503 130 THSREVNEEEGKILAETE--GLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~ 166 (222)
.+... .+..+...... ..+++.++. .+.+..+++
T Consensus 158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 87553 33334444443 467888776 333343333
No 406
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.80 E-value=5.8e-05 Score=64.60 Aligned_cols=84 Identities=19% Similarity=0.031 Sum_probs=46.4
Q ss_pred EEEEEeCCChhhhhhh------hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503 62 KAQIWDTAGQERFRAI------TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (222)
.+.|+||+|....... ....+..+|.+++|+|++... ++......+.... ...-+|+||.|....
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~--- 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAK--- 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCc---
Confidence 7899999995543211 112234678999999987753 2222222222221 123567899996432
Q ss_pred CHHHHHHHHHHcCCeEEEEc
Q 027503 136 NEEEGKILAETEGLYFMETS 155 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~S 155 (222)
.-.+.......+.|+.+++
T Consensus 248 -~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 248 -GGGALSAVAETGAPIKFIG 266 (437)
T ss_pred -ccHHHHHHHHHCcCEEEEe
Confidence 1234455555666655543
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.79 E-value=0.00043 Score=57.97 Aligned_cols=133 Identities=19% Similarity=0.178 Sum_probs=69.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCC---CCCcceeeEEE---------------EEEE------------CCeEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDS---KPTIGVEFAYR---------------NIRV------------GDKLI 61 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~---~~~~~~~~~~~---------------~~~~------------~~~~~ 61 (222)
.-.|+++|+.||||||-+-.|...-..... ...++.|.+.. .+.. .-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 446899999999999988876543321111 11111121111 0000 01124
Q ss_pred EEEEEeCCChhhhhh----hhHhhhcC--CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503 62 KAQIWDTAGQERFRA----ITSSYYRG--ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~~----~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (222)
.+.|+||.|...+.. -...++.. ..-+.+|++++.. ..++...+..+.... +. =+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~---i~-~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP---ID-GLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC---cc-eeEEEcccccC----
Confidence 789999999664433 22333332 3445667777654 355555544444332 22 35579999432
Q ss_pred CHHHHHHHHHHcCCeEEEE
Q 027503 136 NEEEGKILAETEGLYFMET 154 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (222)
..-.......+.+.|+..+
T Consensus 353 s~G~~~s~~~e~~~PV~Yv 371 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYV 371 (407)
T ss_pred chhHHHHHHHHhCCCeEEE
Confidence 2334445555566665555
No 408
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00011 Score=60.96 Aligned_cols=158 Identities=20% Similarity=0.115 Sum_probs=94.0
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCc-------------------C------------CCCCCCCcceeeEEEEE
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDE-------------------F------------RLDSKPTIGVEFAYRNI 54 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~-------------------~------------~~~~~~~~~~~~~~~~~ 54 (222)
..+.-.-++++++|+..+||||+-..++... . .+......++.....
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA-- 150 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRA-- 150 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeE--
Confidence 3344567899999999999999876654110 0 011111122222222
Q ss_pred EECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHH--HHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503 55 RVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TFENT--KKWLRELREFCSSCMAIVLVGNKSDL 129 (222)
Q Consensus 55 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~l~~~~~~~~p~ivv~nK~Dl 129 (222)
.++-...+|++.|+||+..|-.....-...||..++|+++.-.+ .|+.- ......+...... ...++++||+|-
T Consensus 151 ~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv-~~lVv~vNKMdd 229 (501)
T KOG0459|consen 151 YFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV-KHLIVLINKMDD 229 (501)
T ss_pred EEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc-ceEEEEEEeccC
Confidence 33333467899999999988777767777889999999875432 23221 1122223222222 457788999996
Q ss_pred CCCCCCCHH-------HHHHHHHHcC------CeEEEEccccCCCHHHHHH
Q 027503 130 THSREVNEE-------EGKILAETEG------LYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 130 ~~~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~ 167 (222)
...+. +.+ ....|....+ ..|+++|..+|.++.+-..
T Consensus 230 PtvnW-s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 230 PTVNW-SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CccCc-chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 54222 111 1223333332 4699999999999887653
No 409
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.70 E-value=0.00024 Score=60.67 Aligned_cols=85 Identities=16% Similarity=0.021 Sum_probs=47.9
Q ss_pred EEEEEEeCCChhhhhh----hhH--hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA----ITS--SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
+.+.|+||+|...... ... ...-..|.+++|+|..... ++..+...+.... ...-+|.||.|-....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDARG- 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence 4689999999532211 111 1123578889999987542 3333333333222 1235678999953322
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 027503 135 VNEEEGKILAETEGLYFMETS 155 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~S 155 (222)
-.+...+...++|+..+.
T Consensus 256 ---G~~lsi~~~~~~PI~fi~ 273 (428)
T TIGR00959 256 ---GAALSVRSVTGKPIKFIG 273 (428)
T ss_pred ---cHHHHHHHHHCcCEEEEe
Confidence 225666667777766654
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=97.68 E-value=0.0003 Score=60.13 Aligned_cols=85 Identities=15% Similarity=0.013 Sum_probs=46.6
Q ss_pred EEEEEEeCCChhhhhh----hhHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA----ITSS--YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
+.+.|+||+|...... .... ..-..+.+++|+|..... ++......+.... ...-+|+||.|-.....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~rgG 257 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDARGG 257 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCccccc
Confidence 4689999999442211 1111 122567889999986542 3333333333221 12356779999543222
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 027503 135 VNEEEGKILAETEGLYFMETS 155 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~S 155 (222)
.+.......++|+..+.
T Consensus 258 ----~alsi~~~~~~PI~fig 274 (433)
T PRK10867 258 ----AALSIRAVTGKPIKFIG 274 (433)
T ss_pred ----HHHHHHHHHCcCEEEEe
Confidence 25566666777766654
No 411
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.67 E-value=0.00052 Score=58.79 Aligned_cols=90 Identities=19% Similarity=0.126 Sum_probs=50.1
Q ss_pred EEEEEEeCCChhhhh----hhhHhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFR----AITSSYYR---GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 133 (222)
..+.|+||+|..... .....++. ...-+++|++.+.. ...+...+..+. ..+ +--+|+||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~---~~~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS---RLP-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC---CCC-CCEEEEecccccc--
Confidence 478999999964332 12222333 23466777887643 223332222222 211 2357789999533
Q ss_pred CCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 134 EVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..-.+..+....++|+..++ +|.+|
T Consensus 372 --~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22356677778888877763 55554
No 412
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.64 E-value=0.00073 Score=52.45 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=31.5
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503 79 SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129 (222)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 129 (222)
+....++|.+|+|+|.+- .++..+.+......+.. - .++.+|+||.|-
T Consensus 150 Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg-~-k~i~~V~NKv~e 197 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG-I-KRIFVVLNKVDE 197 (255)
T ss_pred cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC-C-ceEEEEEeeccc
Confidence 345678899999999874 34444444333333322 1 679999999994
No 413
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.63 E-value=0.00044 Score=47.12 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=49.9
Q ss_pred EEEEc-CCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 15 AVMIG-DSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 15 I~llG-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
|++.| ..|+||||+...|...-. ....+..-.+ .+.. +.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~vl~~d-------~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRVLLID-------LDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcEEEEe-------CCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56777 568999999877653221 1111211111 1111 568899999865332 3367788999999998
Q ss_pred CCChhhHHHHHHHHH
Q 027503 94 ITRRATFENTKKWLR 108 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~ 108 (222)
.+ ..++..+..++.
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 345555555544
No 414
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.0005 Score=62.41 Aligned_cols=93 Identities=11% Similarity=-0.036 Sum_probs=50.0
Q ss_pred EEEEEEeCCChhhhh----hhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFR----AITSSY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
..+.|+||+|..... ...... ....+-.++|+|.+.. .+.+......+......+ +--+|+||.|-...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~~-- 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGED-VDGCIITKLDEATH-- 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCC-CCEEEEeccCCCCC--
Confidence 368999999933211 111111 2245567888888753 223332223333221111 23567899995432
Q ss_pred CCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 135 VNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
.-.+..+....++|+.++ .+|++|
T Consensus 339 --~G~iL~i~~~~~lPI~yi--t~GQ~V 362 (767)
T PRK14723 339 --LGPALDTVIRHRLPVHYV--STGQKV 362 (767)
T ss_pred --ccHHHHHHHHHCCCeEEE--ecCCCC
Confidence 234556667778887776 456666
No 415
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.61 E-value=0.00045 Score=47.44 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=59.9
Q ss_pred EEEEc-CCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 15 AVMIG-DSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 15 I~llG-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
|+++| ..|+||||+.-.|...-.......+.-.+.... ... .+.++|+|+.... .....+..+|.++++++
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~~~---D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---FGD---DYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---CCC---CEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 34444 678999998876643221110111111111111 011 6789999986532 34457788999999997
Q ss_pred CCChhhHHHHHHHHHHHHHHcCC-CCeEEEEEeC
Q 027503 94 ITRRATFENTKKWLRELREFCSS-CMAIVLVGNK 126 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK 126 (222)
.+. .++..+..++..+...... ...+.+|+|+
T Consensus 74 ~~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QDL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CCh-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 764 4566667777766665433 3466677774
No 416
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00019 Score=61.28 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC------------CCCC--CCcceeeEEEEEEE----------------CCeEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFR------------LDSK--PTIGVEFAYRNIRV----------------GDKLIK 62 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~------------~~~~--~~~~~~~~~~~~~~----------------~~~~~~ 62 (222)
-++.++.+..-|||||-..|....-. .... ...++++...-++. ++..+-
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 45788999999999999998743211 1110 01122222222221 244577
Q ss_pred EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
+.++|.||+..|.+.....++-.|+.++|+|..++--.+.-..+.+.+.+. +.-++++||+|-.
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPVLVMNKMDRA 163 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccceEEeehhhHH
Confidence 889999999999999999999999999999998865433323333444443 3345668999953
No 417
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.59 E-value=0.00063 Score=45.14 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=45.0
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh-hHhhhcCCcEEEEEEe
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI-TSSYYRGALGALLVYD 93 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d 93 (222)
+++.|..|+|||++...+...-..... .. .-++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~-~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK-RV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-eE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999887653321111 11 1111 6789999986532221 2556678899999998
Q ss_pred CCCh
Q 027503 94 ITRR 97 (222)
Q Consensus 94 ~~~~ 97 (222)
.+..
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7754
No 418
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00031 Score=58.76 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=48.7
Q ss_pred EEEEEEeCCChhhhhh----hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA----ITSSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
..+.|+||+|...... ....+.. ..+.+++|+++.. ...++...+.. +... .+--+|+||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~---f~~l-~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPK---LAEI-PIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHh---cCcC-CCCEEEEEcccCCC---
Confidence 5789999999643221 1122222 3466667776532 23333333332 2222 23356789999543
Q ss_pred CCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 135 VNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
..-.+...+...+.|+..++ +|++|.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vp 382 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT--DGQNIT 382 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence 23345566677788876664 344444
No 419
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.57 E-value=0.00054 Score=41.05 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=30.8
Q ss_pred hhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503 81 YYRGALGALLVYDITR--RATFENTKKWLRELREFCSSCMAIVLVGNKSD 128 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 128 (222)
.-+-.+++++++|++. +.+.++-...+..++..... .|+++|.||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~-~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN-KPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC-CCEEEEEeccC
Confidence 3345689999999986 45666666677888877754 89999999998
No 420
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.57 E-value=0.00011 Score=59.08 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=39.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----CCCCcceeeEEEE-EEECCeEEEEEEEeCCCh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD----SKPTIGVEFAYRN-IRVGDKLIKAQIWDTAGQ 71 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~ 71 (222)
...++++|+|.||+|||||+|++........ ..+..|++..... +.+.+.+ .+.++||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 4678999999999999999998765433211 1122233333322 4454444 4789999993
No 421
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.57 E-value=6.7e-05 Score=62.12 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=45.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
-...+++.|+|-|++||||+||+|..+...... ++.|++.....+.++. .+.|.|.||.-
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgiv 308 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGIV 308 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCcee
Confidence 356799999999999999999999987653332 4455566666666654 67899999943
No 422
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.54 E-value=0.0023 Score=55.52 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=47.5
Q ss_pred EEEEEeCCChhhhhh---hhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503 62 KAQIWDTAGQERFRA---ITSSYYRG---ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (222)
.+.++||+|...... .....+.. ..-.++|+|..... ..+... +..+... ...-+|+||.|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i---~~~f~~~-~~~g~IlTKlDet~---- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEV---VQAYRGP-GLAGCILTKLDEAA---- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHH---HHHhccC-CCCEEEEeCCCCcc----
Confidence 578999999432221 11112221 23367888876432 222222 2222222 23456789999532
Q ss_pred CHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 136 NEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..-.+.......++++.++ .+|++|
T Consensus 406 ~~G~~l~i~~~~~lPI~yv--t~GQ~V 430 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYV--SNGQRV 430 (484)
T ss_pred cchHHHHHHHHHCCCeEEE--ecCCCC
Confidence 2344566677778887776 456666
No 423
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0007 Score=57.43 Aligned_cols=134 Identities=21% Similarity=0.171 Sum_probs=68.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc-CCCC---------C--C----------CCcceeeEEEE-E-----EECCeEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDE-FRLD---------S--K----------PTIGVEFAYRN-I-----RVGDKLIKA 63 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~-~~~~---------~--~----------~~~~~~~~~~~-~-----~~~~~~~~~ 63 (222)
..-++|+|++||||||++..|.... .... . . ...+....... . ........+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999999886421 0000 0 0 00011111000 0 001123477
Q ss_pred EEEeCCChhhhh----hhhHhhhc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 64 QIWDTAGQERFR----AITSSYYR-----GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 64 ~l~Dt~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
.++||+|..... ..+..++. ..+-.++|+|++... .++......+ ... -+--+|+||.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f---~~~-~~~glIlTKLDEt~~-- 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY---ESL-NYRRILLTKLDEADF-- 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh---cCC-CCCEEEEEcccCCCC--
Confidence 899999954211 11122222 234678888887653 2322222222 222 233567899995432
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 027503 135 VNEEEGKILAETEGLYFMETS 155 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~S 155 (222)
.-.+.......+.|+..++
T Consensus 375 --~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 375 --LGSFLELADTYSKSFTYLS 393 (432)
T ss_pred --ccHHHHHHHHHCCCEEEEe
Confidence 2235566667777766663
No 424
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.51 E-value=0.00046 Score=49.83 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=60.8
Q ss_pred EEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCC
Q 027503 16 VMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT 95 (222)
Q Consensus 16 ~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (222)
..-|..|+|||++.-.+...-. .....+.-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 3456889999998776543211 0111111111110 000011577999999853 333457788999999999886
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503 96 RRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129 (222)
Q Consensus 96 ~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 129 (222)
. .++..+...+..+.... ...++.+|+|+++-
T Consensus 78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 4 44555444455554433 23567889999974
No 425
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.50 E-value=0.00095 Score=47.58 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-.++|.|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999987654
No 426
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.49 E-value=0.00026 Score=53.41 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
-++|.|..|||||||+++++.
T Consensus 2 v~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999984
No 427
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.48 E-value=0.00046 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
.+-++|+|+.||||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46689999999999999998764
No 428
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.47 E-value=0.0033 Score=51.83 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..-.+|.|.-|||||||+|+++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 345788899999999999999854
No 429
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0024 Score=54.01 Aligned_cols=90 Identities=13% Similarity=-0.014 Sum_probs=50.0
Q ss_pred EEEEEEeCCChhhhhh----hhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA----ITSSYYRG---ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 133 (222)
..+.++||+|...... -...++.. .+-.++|+|++... ..+...+ ..+... -+--+|+||.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~---~~~~~~-~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIF---HQFSPF-SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHH---HHhcCC-CCCEEEEEeccCCC--
Confidence 5789999999543221 11222222 22578899988752 3333332 333222 23456789999543
Q ss_pred CCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 134 EVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..-.+..+....+.|+..+ .+|++|
T Consensus 327 --~~G~~l~~~~~~~~Pi~yi--t~Gq~v 351 (388)
T PRK12723 327 --CVGNLISLIYEMRKEVSYV--TDGQIV 351 (388)
T ss_pred --cchHHHHHHHHHCCCEEEE--eCCCCC
Confidence 2234456666677777666 355555
No 430
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.00084 Score=53.94 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC---------CCC------------CCCcceeeEEEEEE----------E-CCeE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFR---------LDS------------KPTIGVEFAYRNIR----------V-GDKL 60 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~---------~~~------------~~~~~~~~~~~~~~----------~-~~~~ 60 (222)
-+++++|++|+||||++..+...-.. ... ....+...... .. . ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 58999999999999999877542110 000 00011111100 00 0 0113
Q ss_pred EEEEEEeCCChhhhhh----hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA----ITSSYY--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
+.+.++||+|...... .+..++ ...+-+++|+|++... .++..+...+.. . .+--+|+||.|-...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~---~-~~~~~I~TKlDet~~-- 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---I-HIDGIVFTKFDETAS-- 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC---C-CCCEEEEEeecCCCC--
Confidence 5789999999653211 111222 2456788999986431 233333333332 2 234567899995432
Q ss_pred CCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 135 VNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
.-.+...+...+.|+..++ +|+++.
T Consensus 227 --~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 227 --SGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred --ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 2344566666777776663 455544
No 431
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.33 E-value=0.0046 Score=51.52 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
-.+|.|--|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4788899999999999999854
No 432
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.30 E-value=0.00021 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 433
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00023 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.627 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.||+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 434
>PRK08118 topology modulation protein; Reviewed
Probab=97.25 E-value=0.00026 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.21 E-value=0.00029 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
+|+|+|++|||||||++.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 436
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.17 E-value=0.0048 Score=46.34 Aligned_cols=84 Identities=25% Similarity=0.220 Sum_probs=58.9
Q ss_pred EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 027503 60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEE 139 (222)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 139 (222)
.+.+.++|+|+... ......+..+|.+++++..+. .+...+..++..+... +.|+.+|+|++|.... ...+
T Consensus 92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~~ 162 (179)
T cd03110 92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAEE 162 (179)
T ss_pred CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHHH
Confidence 45889999997542 234456788999999999874 3556666666666544 3678899999996431 3455
Q ss_pred HHHHHHHcCCeEE
Q 027503 140 GKILAETEGLYFM 152 (222)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (222)
..++....+++++
T Consensus 163 ~~~~~~~~~~~vl 175 (179)
T cd03110 163 IEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHcCCCeE
Confidence 6777777787764
No 437
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.16 E-value=0.00032 Score=50.52 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHhh
Q 027503 15 AVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~ 34 (222)
|+++|++|||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 438
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.16 E-value=0.015 Score=43.32 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=51.8
Q ss_pred EEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 027503 62 KAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK 141 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 141 (222)
.+.++|+|+.... .....+..+|.+|++++.+. .++..+..++..+.... .....+|+|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence 6889999985432 24455788999999998775 34555555555555422 2346788999985421 2222234
Q ss_pred HHHHHcCCeEE
Q 027503 142 ILAETEGLYFM 152 (222)
Q Consensus 142 ~~~~~~~~~~~ 152 (222)
.+....+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555666654
No 439
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.15 E-value=0.00067 Score=41.61 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
..+|.|+.|||||||+.++.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999987643
No 440
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.14 E-value=0.013 Score=42.45 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999997754
No 441
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.08 E-value=0.00066 Score=52.15 Aligned_cols=24 Identities=42% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEF 37 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~ 37 (222)
.++|+|++|||||||++++.+-+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 489999999999999999876553
No 442
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0014 Score=54.47 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=29.9
Q ss_pred eEEEEEEEeCCChhhhh-hhh-----HhhhcCCcEEEEEEeCCChhhHHHHH
Q 027503 59 KLIKAQIWDTAGQERFR-AIT-----SSYYRGALGALLVYDITRRATFENTK 104 (222)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~-~~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~ 104 (222)
..+.+.|+||+|....+ .+. -.-.-..|-+|+|.|++-+++-+...
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence 34789999999954322 111 12233679999999999876555433
No 443
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.04 E-value=0.00066 Score=42.74 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 444
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.03 E-value=0.015 Score=43.81 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999988754
No 445
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.01 E-value=0.00041 Score=62.31 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=78.2
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCc-------------c---------------------------
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTI-------------G--------------------------- 46 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~-------------~--------------------------- 46 (222)
..+-..+.|+++|..++||||.++.+.+..|.+-..... .
T Consensus 24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 345567899999999999999999999866532210000 0
Q ss_pred -------------eeeEEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhHhhhcCCcEEEEEEeCCChhh
Q 027503 47 -------------VEFAYRNIRVG-DKLIKAQIWDTAGQE-------------RFRAITSSYYRGALGALLVYDITRRAT 99 (222)
Q Consensus 47 -------------~~~~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s 99 (222)
+......+.+. -.-..++++|.||.. ....+...|+...+.+|+.+...+.+
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d- 182 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD- 182 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh-
Confidence 00000000110 011367889999932 34567888999999999988876621
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 100 FENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
-..-.++...++....+..++-|++|.|+.+
T Consensus 183 -~ats~alkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 183 -IATSPALVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred -hhcCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence 1113466777777766677888888888865
No 446
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.98 E-value=0.00045 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 447
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.96 E-value=0.00064 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027503 15 AVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~ 36 (222)
++|+|++|||||||+|-+-+-.
T Consensus 34 vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 7999999999999999987644
No 448
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.96 E-value=0.042 Score=40.85 Aligned_cols=138 Identities=7% Similarity=0.074 Sum_probs=93.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
...|+++|..+.++..|..++...... .. ..+.... .+-+ |.. ....-+..|.++|+
T Consensus 15 ~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~-l~Vh~a~-----sLPL-p~e------~~~lRprIDlIVFv 71 (176)
T PF11111_consen 15 TATILLVGTEEALLQQLAEAMLEEDKE----------FK-LKVHLAK-----SLPL-PSE------NNNLRPRIDLIVFV 71 (176)
T ss_pred eeEEEEecccHHHHHHHHHHHHhhccc----------ee-EEEEEec-----cCCC-ccc------ccCCCceeEEEEEE
Confidence 567999999999999999999852210 11 1111110 0000 111 11223577999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
+|.....++..++.-+..+....-.+ .+.++.+-..-.+...+...+...++..++++++.+.-.+.++...+=+.|.+
T Consensus 72 inl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~ 150 (176)
T PF11111_consen 72 INLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLR 150 (176)
T ss_pred EecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHH
Confidence 99999999988887666653322222 36677777776666788899999999999999999988888776665555555
Q ss_pred HH
Q 027503 172 QI 173 (222)
Q Consensus 172 ~i 173 (222)
.+
T Consensus 151 ~l 152 (176)
T PF11111_consen 151 ML 152 (176)
T ss_pred HH
Confidence 43
No 449
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0007 Score=53.06 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027503 15 AVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~ 36 (222)
|+|+|++|||||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999987644
No 450
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.93 E-value=0.0025 Score=47.79 Aligned_cols=44 Identities=23% Similarity=0.056 Sum_probs=28.8
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|++++|+|+.++.+..+ ..+...+. ....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999988743322 22222221 2233489999999999965
No 451
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.91 E-value=0.00083 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999987754
No 452
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.91 E-value=0.019 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
+++|+|++|+|||||++.+.+..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 78999999999999999988754
No 453
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.89 E-value=0.00081 Score=52.20 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=36.4
Q ss_pred EEEEEeCCChhhhh----hhh--HhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503 62 KAQIWDTAGQERFR----AIT--SSYYRGALGALLVYDIT------RRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~----~~~--~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 129 (222)
...++|+||+.++. .++ ..++...|.=+.++.+. +|..|-. ..+..+.....-..|.+=|+.|+|+
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhHH
Confidence 56799999976532 221 23344455544444433 4544433 2222233322233778888899998
Q ss_pred CC
Q 027503 130 TH 131 (222)
Q Consensus 130 ~~ 131 (222)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 53
No 454
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.88 E-value=0.011 Score=46.11 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=64.4
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHH
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEE 138 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 138 (222)
+.|.|+|+.|... ......+..+|.+|+=+-.+..+.-+. ...|+..+.......+|+-|+.|++.-.. ......
T Consensus 84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~ 160 (231)
T PF07015_consen 84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR 160 (231)
T ss_pred CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence 5789999998653 224555668999888776664333222 23455555554556699999999987321 111112
Q ss_pred HHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 139 EGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 139 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
...++. .++|++.+.......+.++|.
T Consensus 161 ~~~e~~--~~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQL--ESLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHH--hcCCccccccccHHHHHHHHH
Confidence 222332 258899988888887777775
No 455
>PRK01889 GTPase RsgA; Reviewed
Probab=96.87 E-value=0.0015 Score=54.73 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
+++|+|.+|+|||||+|.|.+..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 78999999999999999998754
No 456
>PRK06217 hypothetical protein; Validated
Probab=96.86 E-value=0.00094 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.+|+|+|.+|||||||.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 457
>PRK04195 replication factor C large subunit; Provisional
Probab=96.84 E-value=0.024 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.++|.|++|+|||++++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998764
No 458
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.84 E-value=0.00092 Score=46.99 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 459
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.82 E-value=0.0061 Score=43.56 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999988653
No 460
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.81 E-value=0.0012 Score=46.50 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFR 38 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~ 38 (222)
-.++|+|++|+|||++++.+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999999876543
No 461
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0017 Score=51.14 Aligned_cols=89 Identities=17% Similarity=0.276 Sum_probs=56.7
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhhhc--
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYR-- 83 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~-- 83 (222)
........|++.|..+. |++|++.+.+.-.. ..++...++.+....-++ .+-...+|+.+|......+..--+.
T Consensus 40 ~~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~ 116 (363)
T KOG3929|consen 40 IAEKFEFFIGSKGNGGK--TTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGD 116 (363)
T ss_pred hhccceeEEEEecCCce--eEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCccccc
Confidence 34456788999998765 99999988776433 346666666654433333 3334568999887654443322222
Q ss_pred --CCcEEEEEEeCCChh
Q 027503 84 --GALGALLVYDITRRA 98 (222)
Q Consensus 84 --~~d~~i~v~d~~~~~ 98 (222)
..-.+|++.|++++.
T Consensus 117 ~l~~~slIL~LDls~p~ 133 (363)
T KOG3929|consen 117 TLRTFSLILVLDLSKPN 133 (363)
T ss_pred chhhhhheeeeecCChH
Confidence 224578999999875
No 462
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.80 E-value=0.0012 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027503 15 AVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~ 36 (222)
|+|.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999987643
No 463
>PRK03839 putative kinase; Provisional
Probab=96.79 E-value=0.0011 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998654
No 464
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.78 E-value=0.0016 Score=50.29 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=22.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
++...-|+|.|++|||||||++.|.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344567999999999999999999764
No 465
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.78 E-value=0.0012 Score=47.54 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 466
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.77 E-value=0.0097 Score=48.27 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=63.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----------------
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE---------------- 72 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------------- 72 (222)
..+...++|+|++|.|||+++++|....- ...... ...+.+..+.+|..-
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34667899999999999999999987442 221111 112244555555411
Q ss_pred --------hhhhhhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHHc-CCCCeEEEEEeC
Q 027503 73 --------RFRAITSSYYRGALGALLVYDITRR---ATFENTKKWLRELREFC-SSCMAIVLVGNK 126 (222)
Q Consensus 73 --------~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK 126 (222)
.........++...+=++++|--+- .+...-+..+..++... ..++|++.||+.
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1122334667777888888885532 13334455666666654 466999999864
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.76 E-value=0.0069 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027503 15 AVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~ 36 (222)
|+|.|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987644
No 468
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0053 Score=46.09 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCeEE--EEccccCCCHHHHHHHHHHHHHHh
Q 027503 138 EEGKILAETEGLYFM--ETSAMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~Sa~~~~gi~~~~~~l~~~i~~~ 176 (222)
..++.++.+..+-.| ++||.+.+=+.|++..+.+.+.+-
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 334555555555444 499999999999997666665543
No 469
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.73 E-value=0.021 Score=46.45 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=42.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC--CcEEEEE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG--ALGALLV 91 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v 91 (222)
.|+|.|.+||||||+++.|-...+ ..+|......+..+....... .+.+.++
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av~ 61 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAVV 61 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEEE
Confidence 689999999999999999942211 112333323233332222221 3557788
Q ss_pred EeCCChhhHHHHHHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREF 113 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~ 113 (222)
+|+.+...+......+..+...
T Consensus 62 iD~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 62 IDVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred EccCchhhHHHHHHHHHHHHHc
Confidence 8887765334445555555543
No 470
>PRK14530 adenylate kinase; Provisional
Probab=96.73 E-value=0.0013 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999998853
No 471
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.016 Score=49.34 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
+..-+|+|+|+.|+|||||+.-|++..
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCC
Confidence 456789999999999999999988754
No 472
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.71 E-value=0.0014 Score=51.64 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.+..++++|+|++|||||+|+..|+..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999998754
No 473
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.70 E-value=0.0014 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.|+|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998764
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.70 E-value=0.0015 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.|+|+|++|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999996543
No 475
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.70 E-value=0.0016 Score=47.10 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.|+|+|+.|||||||++.|+..-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988654
No 476
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.68 E-value=0.017 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
-+++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999988753
No 477
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.68 E-value=0.0077 Score=49.81 Aligned_cols=96 Identities=21% Similarity=0.124 Sum_probs=64.1
Q ss_pred EEeCCChh-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH
Q 027503 65 IWDTAGQE-RFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL 143 (222)
Q Consensus 65 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 143 (222)
+-+.||+. .+.......+..+|+++-|+|+.+|.+... ..+.+.... .|.++|+||+|+... .....-.+.+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~-k~~i~vlNK~DL~~~-~~~~~W~~~~ 86 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKE-KPKLLVLNKADLAPK-EVTKKWKKYF 86 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHcc-CCcEEEEehhhcCCH-HHHHHHHHHH
Confidence 33446644 566677888999999999999999875433 223333333 455999999999863 3334445555
Q ss_pred HHHcCCeEEEEccccCCCHHHHHH
Q 027503 144 AETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 144 ~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
....+...+.+++..+.+...+..
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HhcCCCccEEEEeecccCccchHH
Confidence 566667677888887776655553
No 478
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.67 E-value=0.00064 Score=56.56 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=0.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG 70 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (222)
..+-|.++|-|++||||+||.|-...+.... |..|.+-....+.+-. ++.|+|+||
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmk---rIfLIDcPG 361 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMK---RIFLIDCPG 361 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHh---ceeEecCCC
No 479
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.67 E-value=0.0016 Score=44.66 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 027503 14 KAVMIGDSAVGKSNLLSRFA 33 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~ 33 (222)
.++|+|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999975
No 480
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.65 E-value=0.0016 Score=48.94 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 481
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.65 E-value=0.0035 Score=48.39 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
...-|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4455888999999999999999754
No 482
>PRK08233 hypothetical protein; Provisional
Probab=96.63 E-value=0.002 Score=48.33 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.+-|+|.|.+|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367889999999999999998764
No 483
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.62 E-value=0.0024 Score=47.95 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEF 37 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~ 37 (222)
=+++|+|++|+|||||+|-+.+=..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 3689999999999999998876444
No 484
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.61 E-value=0.0017 Score=49.62 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 485
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.61 E-value=0.0017 Score=48.98 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+|+|++||||||+++.|..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999873
No 486
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.61 E-value=0.009 Score=49.59 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
..+|+|.|++|||||||++.|+..-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999999987533
No 487
>PRK13949 shikimate kinase; Provisional
Probab=96.61 E-value=0.002 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
+|+|+|++||||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999987643
No 488
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.60 E-value=0.0021 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..+.|+|.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999998764
No 489
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.60 E-value=0.043 Score=40.61 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 490
>PRK14532 adenylate kinase; Provisional
Probab=96.60 E-value=0.0018 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
+|+|+|+|||||||+.+.|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.58 E-value=0.0021 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-.++|+|++|||||||++.|.+..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999988643
No 492
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.55 E-value=0.0063 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.|+|.|++|+|||+|++.+...
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998754
No 493
>PRK14531 adenylate kinase; Provisional
Probab=96.54 E-value=0.0021 Score=48.63 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
.+|+++|+|||||||+.+.|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998854
No 494
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.54 E-value=0.03 Score=48.14 Aligned_cols=51 Identities=25% Similarity=0.340 Sum_probs=35.1
Q ss_pred hhhHhhhcCCcEEEEEEe-CCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Q 027503 76 AITSSYYRGALGALLVYD-ITRRATFENTKKWLRELREFCSSCMAIVLVGNKSD 128 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D 128 (222)
.+....+++++++|+ | ++..-+..++..++..++.....+..+|++-.|.+
T Consensus 150 EIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 150 EILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 466778888886554 3 22223556777788888888888888888877754
No 495
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.53 E-value=0.0023 Score=48.57 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
..-|+|+|++|||||||++.|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3458999999999999999998653
No 496
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.52 E-value=0.016 Score=48.30 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
..+|+|.|++|||||||++.|++.-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4679999999999999999998643
No 497
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.52 E-value=0.0028 Score=47.46 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCc
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
...-+.|+|.+|||||||++++....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 34468999999999999999998653
No 498
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.0021 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.|+|+|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 389999999999999999876
No 499
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.51 E-value=0.0025 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
-.++|+|+.|+|||||++.++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3689999999999999998863
No 500
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.51 E-value=0.0024 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999987643
Done!