Query 027503
Match_columns 222
No_of_seqs 152 out of 1724
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 18:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.2E-43 1.8E-47 271.5 19.9 168 9-176 10-177 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 5.4E-37 1.8E-41 235.8 25.6 176 8-183 4-179 (206)
3 3cpj_B GTP-binding protein YPT 100.0 4.4E-37 1.5E-41 239.3 20.4 178 6-183 7-184 (223)
4 2bov_A RAla, RAS-related prote 100.0 3.2E-35 1.1E-39 225.4 23.7 171 8-179 10-181 (206)
5 1vg8_A RAS-related protein RAB 100.0 3.1E-35 1.1E-39 225.7 22.4 174 8-182 4-182 (207)
6 2ew1_A RAS-related protein RAB 100.0 7.6E-35 2.6E-39 223.5 22.8 176 4-179 18-193 (201)
7 3tkl_A RAS-related protein RAB 100.0 3.2E-34 1.1E-38 218.2 25.2 175 6-180 10-184 (196)
8 2a5j_A RAS-related protein RAB 100.0 3.7E-34 1.3E-38 217.5 24.3 175 3-177 12-186 (191)
9 2bme_A RAB4A, RAS-related prot 100.0 3.7E-34 1.3E-38 216.1 23.0 173 8-180 6-178 (186)
10 1zbd_A Rabphilin-3A; G protein 100.0 9.4E-34 3.2E-38 217.1 24.6 172 7-178 3-174 (203)
11 2gf9_A RAS-related protein RAB 100.0 9.3E-34 3.2E-38 214.8 24.1 173 4-176 14-186 (189)
12 2fu5_C RAS-related protein RAB 100.0 1.6E-34 5.4E-39 217.7 19.4 173 7-179 3-175 (183)
13 2hup_A RAS-related protein RAB 100.0 4.8E-34 1.6E-38 218.8 22.2 172 6-177 23-195 (201)
14 2oil_A CATX-8, RAS-related pro 100.0 7.5E-34 2.6E-38 215.9 22.9 174 4-177 17-190 (193)
15 3tw8_B RAS-related protein RAB 100.0 1.1E-33 3.7E-38 212.2 23.3 174 7-181 4-177 (181)
16 3bc1_A RAS-related protein RAB 100.0 9.3E-34 3.2E-38 214.9 23.1 178 2-179 1-189 (195)
17 2o52_A RAS-related protein RAB 100.0 4.5E-34 1.5E-38 218.8 21.5 176 4-179 17-192 (200)
18 1z0f_A RAB14, member RAS oncog 100.0 1.4E-33 4.8E-38 211.2 22.9 170 6-175 9-178 (179)
19 2efe_B Small GTP-binding prote 100.0 2.7E-33 9.2E-38 210.3 23.0 171 6-176 6-176 (181)
20 1z08_A RAS-related protein RAB 100.0 1E-33 3.5E-38 210.4 19.9 168 8-175 2-169 (170)
21 2g6b_A RAS-related protein RAB 100.0 4.9E-33 1.7E-37 208.7 23.3 171 6-176 4-175 (180)
22 2il1_A RAB12; G-protein, GDP, 100.0 1.9E-33 6.6E-38 213.8 21.0 171 5-175 19-190 (192)
23 1z0j_A RAB-22, RAS-related pro 100.0 6.6E-33 2.2E-37 205.9 23.1 166 8-173 2-167 (170)
24 3dz8_A RAS-related protein RAB 100.0 2.5E-34 8.6E-39 218.4 15.6 172 6-177 17-188 (191)
25 2y8e_A RAB-protein 6, GH09086P 100.0 2.2E-33 7.5E-38 210.2 20.2 168 7-174 9-176 (179)
26 1g16_A RAS-related protein SEC 100.0 3.3E-33 1.1E-37 207.5 20.8 166 10-176 1-166 (170)
27 1r2q_A RAS-related protein RAB 100.0 4.2E-33 1.4E-37 206.8 21.4 165 9-173 3-167 (170)
28 2fg5_A RAB-22B, RAS-related pr 100.0 2.2E-33 7.4E-38 213.5 19.9 171 4-174 15-185 (192)
29 4dsu_A GTPase KRAS, isoform 2B 100.0 1.8E-32 6.1E-37 207.1 24.7 172 10-183 2-174 (189)
30 3kkq_A RAS-related protein M-R 100.0 1.3E-32 4.5E-37 207.2 23.6 168 7-175 13-182 (183)
31 1z2a_A RAS-related protein RAB 100.0 4.5E-33 1.6E-37 206.4 20.2 166 9-175 2-167 (168)
32 1ek0_A Protein (GTP-binding pr 100.0 8.4E-33 2.9E-37 205.2 21.3 163 11-173 2-167 (170)
33 2nzj_A GTP-binding protein REM 100.0 1.3E-32 4.4E-37 205.4 22.0 169 10-179 2-173 (175)
34 2fn4_A P23, RAS-related protei 100.0 1.3E-32 4.6E-37 206.2 22.0 170 7-177 4-174 (181)
35 3cph_A RAS-related protein SEC 100.0 1.5E-32 5E-37 211.7 22.7 171 7-178 15-185 (213)
36 3t5g_A GTP-binding protein RHE 100.0 1E-32 3.5E-37 207.4 21.1 168 9-177 3-171 (181)
37 2gf0_A GTP-binding protein DI- 100.0 3.7E-33 1.3E-37 212.7 18.6 166 9-176 5-172 (199)
38 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.2E-32 1.1E-36 203.7 23.3 167 8-175 3-174 (177)
39 3cbq_A GTP-binding protein REM 100.0 9.3E-33 3.2E-37 210.8 20.5 170 8-177 19-190 (195)
40 3q85_A GTP-binding protein REM 100.0 1.3E-32 4.3E-37 204.5 20.1 165 12-176 2-168 (169)
41 2hxs_A RAB-26, RAS-related pro 100.0 2.8E-33 9.6E-38 209.7 16.7 168 9-176 3-174 (178)
42 1z06_A RAS-related protein RAB 100.0 1.9E-32 6.4E-37 207.7 21.2 168 7-174 15-187 (189)
43 2f7s_A C25KG, RAS-related prot 100.0 5.4E-33 1.8E-37 215.0 18.3 174 6-179 19-203 (217)
44 2p5s_A RAS and EF-hand domain 100.0 6.9E-33 2.4E-37 211.8 18.7 168 8-175 24-197 (199)
45 3ihw_A Centg3; RAS, centaurin, 100.0 8.1E-32 2.8E-36 203.7 22.7 165 6-177 14-182 (184)
46 3clv_A RAB5 protein, putative; 100.0 1.3E-31 4.4E-36 204.5 23.7 165 9-176 4-205 (208)
47 3reg_A RHO-like small GTPase; 100.0 6.1E-32 2.1E-36 205.6 21.7 168 8-177 19-190 (194)
48 3c5c_A RAS-like protein 12; GD 100.0 2.6E-32 8.7E-37 206.9 19.4 165 9-175 18-186 (187)
49 2yc2_C IFT27, small RAB-relate 100.0 7.3E-33 2.5E-37 212.4 16.5 172 10-181 18-198 (208)
50 1x3s_A RAS-related protein RAB 100.0 8.3E-32 2.9E-36 204.5 22.2 169 8-177 11-180 (195)
51 1u8z_A RAS-related protein RAL 100.0 7.3E-32 2.5E-36 199.6 21.0 164 11-175 3-167 (168)
52 2a9k_A RAS-related protein RAL 100.0 9.8E-32 3.3E-36 202.5 21.7 170 8-178 14-184 (187)
53 3oes_A GTPase rhebl1; small GT 100.0 1.5E-32 5.1E-37 210.3 17.3 170 9-179 21-191 (201)
54 2j0v_A RAC-like GTP-binding pr 100.0 1.4E-32 4.7E-37 212.0 17.2 170 10-181 7-186 (212)
55 3q72_A GTP-binding protein RAD 100.0 7.8E-32 2.7E-36 199.6 20.4 163 12-176 2-165 (166)
56 2iwr_A Centaurin gamma 1; ANK 100.0 1.9E-31 6.5E-36 199.9 22.5 165 10-181 5-175 (178)
57 3q3j_B RHO-related GTP-binding 100.0 3.6E-32 1.2E-36 210.4 19.0 169 8-178 23-206 (214)
58 1c1y_A RAS-related protein RAP 100.0 7.4E-32 2.5E-36 199.6 19.9 163 11-174 2-166 (167)
59 1ky3_A GTP-binding protein YPT 100.0 5.1E-32 1.7E-36 203.2 19.2 170 8-177 4-180 (182)
60 2atx_A Small GTP binding prote 100.0 1.6E-31 5.5E-36 203.2 21.9 169 4-174 10-192 (194)
61 1kao_A RAP2A; GTP-binding prot 100.0 9.8E-32 3.3E-36 198.7 20.1 164 11-175 2-166 (167)
62 2g3y_A GTP-binding protein GEM 100.0 1.4E-31 4.9E-36 206.6 21.0 169 8-176 33-204 (211)
63 2q3h_A RAS homolog gene family 100.0 1.9E-31 6.4E-36 203.9 20.8 170 7-178 15-198 (201)
64 2atv_A RERG, RAS-like estrogen 100.0 2E-31 6.8E-36 203.2 20.8 166 10-177 26-193 (196)
65 1m7b_A RND3/RHOE small GTP-bin 100.0 1.4E-31 4.9E-36 202.0 18.5 166 8-175 3-183 (184)
66 3con_A GTPase NRAS; structural 100.0 1.1E-30 3.6E-35 197.9 23.2 170 8-179 17-187 (190)
67 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.1E-31 1.1E-35 199.7 19.8 165 10-176 3-181 (186)
68 2j1l_A RHO-related GTP-binding 100.0 2.4E-31 8.2E-36 205.7 19.4 166 10-177 32-211 (214)
69 4djt_A GTP-binding nuclear pro 100.0 9.1E-32 3.1E-36 208.2 17.0 172 6-177 5-177 (218)
70 3l0i_B RAS-related protein RAB 100.0 3.8E-34 1.3E-38 218.8 3.4 170 6-175 27-196 (199)
71 2gco_A H9, RHO-related GTP-bin 100.0 1.2E-30 4.2E-35 199.7 22.5 166 8-175 21-200 (201)
72 1gwn_A RHO-related GTP-binding 100.0 2.9E-31 9.9E-36 204.1 18.5 166 8-175 24-204 (205)
73 2ce2_X GTPase HRAS; signaling 100.0 2.8E-30 9.5E-35 190.5 22.4 163 11-175 2-165 (166)
74 3t1o_A Gliding protein MGLA; G 100.0 4.8E-32 1.7E-36 206.0 13.2 175 1-179 3-196 (198)
75 2erx_A GTP-binding protein DI- 100.0 6.7E-31 2.3E-35 195.2 18.8 163 11-174 2-166 (172)
76 3gj0_A GTP-binding nuclear pro 100.0 1.3E-31 4.4E-36 208.0 15.4 173 2-177 5-177 (221)
77 2f9l_A RAB11B, member RAS onco 100.0 5.5E-30 1.9E-34 195.8 23.4 169 9-177 2-170 (199)
78 2cjw_A GTP-binding protein GEM 100.0 2.6E-30 8.7E-35 196.8 21.5 167 10-177 4-174 (192)
79 2fv8_A H6, RHO-related GTP-bin 100.0 1.7E-30 5.9E-35 199.8 20.6 165 10-176 23-201 (207)
80 3bwd_D RAC-like GTP-binding pr 100.0 3.3E-31 1.1E-35 199.1 12.5 163 10-174 6-180 (182)
81 4bas_A ADP-ribosylation factor 100.0 5.8E-30 2E-34 195.0 18.7 167 6-177 11-191 (199)
82 4gzl_A RAS-related C3 botulinu 100.0 3.9E-30 1.3E-34 197.5 17.3 162 10-173 28-203 (204)
83 1oix_A RAS-related protein RAB 100.0 1.2E-28 4.1E-33 187.3 22.0 168 6-173 23-190 (191)
84 1upt_A ARL1, ADP-ribosylation 100.0 1.1E-29 3.6E-34 188.8 14.4 161 9-175 4-169 (171)
85 1r8s_A ADP-ribosylation factor 100.0 6.4E-30 2.2E-34 188.9 12.5 156 13-175 1-162 (164)
86 2h57_A ADP-ribosylation factor 100.0 9.1E-29 3.1E-33 187.4 18.2 163 7-175 16-187 (190)
87 1f6b_A SAR1; gtpases, N-termin 100.0 5E-29 1.7E-33 190.5 15.5 156 10-172 23-196 (198)
88 1zd9_A ADP-ribosylation factor 100.0 2.5E-29 8.7E-34 190.3 13.7 160 10-175 20-185 (188)
89 1ksh_A ARF-like protein 2; sma 100.0 3.3E-28 1.1E-32 183.5 19.6 160 10-176 16-181 (186)
90 1m2o_B GTP-binding protein SAR 100.0 1.6E-28 5.6E-33 186.4 17.8 156 10-172 21-189 (190)
91 2zej_A Dardarin, leucine-rich 100.0 2E-29 7E-34 190.3 10.9 164 12-176 2-179 (184)
92 2h17_A ADP-ribosylation factor 100.0 1.2E-28 4.1E-33 185.5 14.8 160 6-172 15-180 (181)
93 2b6h_A ADP-ribosylation factor 100.0 2.4E-29 8.1E-34 191.3 11.0 158 10-174 27-190 (192)
94 1zj6_A ADP-ribosylation factor 100.0 2.2E-28 7.5E-33 184.9 15.7 160 10-176 14-179 (187)
95 2wkq_A NPH1-1, RAS-related C3 100.0 1.1E-27 3.9E-32 196.1 20.3 164 10-175 153-330 (332)
96 2x77_A ADP-ribosylation factor 100.0 4.7E-29 1.6E-33 188.8 10.7 160 10-176 20-185 (189)
97 1fzq_A ADP-ribosylation factor 100.0 7.9E-29 2.7E-33 186.7 11.9 159 10-175 14-178 (181)
98 1moz_A ARL1, ADP-ribosylation 100.0 5.3E-29 1.8E-33 187.2 10.5 160 10-176 16-181 (183)
99 3llu_A RAS-related GTP-binding 100.0 7.6E-29 2.6E-33 189.0 10.8 163 6-173 14-195 (196)
100 3th5_A RAS-related C3 botulinu 99.9 1.2E-30 4.3E-35 200.0 0.0 162 10-173 28-203 (204)
101 2qu8_A Putative nucleolar GTP- 100.0 6.3E-27 2.2E-31 182.5 18.5 169 10-181 27-211 (228)
102 2wji_A Ferrous iron transport 100.0 2.5E-27 8.4E-32 175.8 14.2 153 12-173 3-163 (165)
103 2lkc_A Translation initiation 99.9 4.3E-27 1.5E-31 175.9 13.9 161 9-178 5-174 (178)
104 3c5h_A Glucocorticoid receptor 99.9 2.8E-28 9.7E-33 193.4 6.9 168 5-174 12-254 (255)
105 2fh5_B SR-beta, signal recogni 99.9 2E-26 6.8E-31 177.7 16.5 160 9-172 4-213 (214)
106 2cxx_A Probable GTP-binding pr 99.9 7.9E-27 2.7E-31 176.2 12.0 158 13-179 2-188 (190)
107 3r7w_A Gtpase1, GTP-binding pr 99.9 2.4E-26 8.2E-31 187.0 15.4 163 11-175 2-181 (307)
108 1svi_A GTP-binding protein YSX 99.9 3E-26 1E-30 173.9 13.1 160 7-173 18-193 (195)
109 3o47_A ADP-ribosylation factor 99.9 9.4E-27 3.2E-31 191.0 10.1 158 11-175 164-327 (329)
110 2wjg_A FEOB, ferrous iron tran 99.9 3.8E-26 1.3E-30 172.4 12.6 159 10-177 5-171 (188)
111 3lvq_E ARF-GAP with SH3 domain 99.9 2.7E-26 9.2E-31 198.1 11.6 160 10-176 320-485 (497)
112 2dyk_A GTP-binding protein; GT 99.9 1.6E-25 5.4E-30 164.6 13.4 150 13-173 2-160 (161)
113 3a1s_A Iron(II) transport prot 99.9 1.2E-25 4.1E-30 178.5 13.5 156 10-174 3-166 (258)
114 2gj8_A MNME, tRNA modification 99.9 5.7E-26 2E-30 169.7 9.9 154 11-174 3-165 (172)
115 3r7w_B Gtpase2, GTP-binding pr 99.9 1.9E-26 6.5E-31 186.9 7.5 157 14-177 1-176 (331)
116 3pqc_A Probable GTP-binding pr 99.9 7.7E-25 2.6E-29 165.8 14.3 161 5-175 16-194 (195)
117 3iby_A Ferrous iron transport 99.9 1.1E-25 3.8E-30 178.5 9.3 151 13-172 2-164 (256)
118 3iev_A GTP-binding protein ERA 99.9 3.4E-24 1.2E-28 174.3 18.2 162 8-174 6-181 (308)
119 3dpu_A RAB family protein; roc 99.9 9.4E-26 3.2E-30 196.3 9.0 165 8-176 37-209 (535)
120 3b1v_A Ferrous iron uptake tra 99.9 2E-25 6.7E-30 178.4 9.3 153 11-173 2-162 (272)
121 3i8s_A Ferrous iron transport 99.9 4.3E-25 1.5E-29 176.8 8.5 155 11-174 2-168 (274)
122 4dhe_A Probable GTP-binding pr 99.9 1.3E-24 4.6E-29 168.3 10.9 168 6-177 23-213 (223)
123 3k53_A Ferrous iron transport 99.9 2.2E-24 7.6E-29 172.4 12.2 156 11-174 2-165 (271)
124 1nrj_B SR-beta, signal recogni 99.9 9.6E-25 3.3E-29 168.7 6.6 147 6-161 6-170 (218)
125 2hjg_A GTP-binding protein ENG 99.9 1.4E-23 4.7E-28 178.4 13.2 161 10-176 173-350 (436)
126 2e87_A Hypothetical protein PH 99.9 1.7E-22 5.9E-27 167.5 18.1 162 10-176 165-337 (357)
127 3gee_A MNME, tRNA modification 99.9 3.5E-23 1.2E-27 176.9 13.7 156 12-174 233-397 (476)
128 4dcu_A GTP-binding protein ENG 99.9 3.3E-23 1.1E-27 176.9 13.0 163 9-177 192-371 (456)
129 3qq5_A Small GTP-binding prote 99.9 7.9E-24 2.7E-28 178.2 7.1 162 4-174 26-195 (423)
130 1wf3_A GTP-binding protein; GT 99.9 2E-22 6.9E-27 163.2 15.1 156 10-173 5-171 (301)
131 1xzp_A Probable tRNA modificat 99.9 3.5E-22 1.2E-26 170.9 13.9 152 13-175 244-405 (482)
132 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-22 3.9E-27 167.1 9.5 158 13-175 159-330 (342)
133 1mky_A Probable GTP-binding pr 99.9 8.8E-22 3E-26 167.4 15.1 151 13-175 2-166 (439)
134 3lxx_A GTPase IMAP family memb 99.9 3.7E-21 1.3E-25 150.8 15.1 164 8-175 25-214 (239)
135 1cip_A Protein (guanine nucleo 99.9 1.6E-21 5.5E-26 160.8 13.4 124 52-177 186-346 (353)
136 3sjy_A Translation initiation 99.9 6.9E-21 2.4E-25 160.2 17.2 159 8-174 4-191 (403)
137 1wb1_A Translation elongation 99.9 3.5E-21 1.2E-25 165.2 15.6 157 9-174 16-188 (482)
138 2qtf_A Protein HFLX, GTP-bindi 99.9 1.3E-20 4.5E-25 156.1 17.5 159 14-175 181-354 (364)
139 1s0u_A EIF-2-gamma, translatio 99.9 1E-20 3.5E-25 159.4 17.1 160 9-174 5-197 (408)
140 3geh_A MNME, tRNA modification 99.9 5.6E-22 1.9E-26 168.9 9.3 152 12-175 224-384 (462)
141 3cb4_D GTP-binding protein LEP 99.9 8E-21 2.7E-25 166.1 15.5 159 10-174 2-181 (599)
142 2xtp_A GTPase IMAP family memb 99.9 6.6E-21 2.3E-25 151.2 13.7 162 9-175 19-208 (260)
143 3ohm_A Guanine nucleotide-bind 99.9 6.7E-21 2.3E-25 155.1 13.5 126 50-177 158-320 (327)
144 3t5d_A Septin-7; GTP-binding p 99.9 9.2E-22 3.1E-26 157.5 8.0 160 9-172 5-201 (274)
145 2ywe_A GTP-binding protein LEP 99.9 1.5E-20 5.3E-25 164.1 16.1 159 10-174 4-183 (600)
146 1kk1_A EIF2gamma; initiation o 99.8 1.3E-20 4.6E-25 158.8 15.0 161 8-174 6-199 (410)
147 1mky_A Probable GTP-binding pr 99.8 1.1E-20 3.8E-25 160.6 14.4 161 10-176 178-356 (439)
148 2xtz_A Guanine nucleotide-bind 99.8 6.2E-21 2.1E-25 157.2 12.0 120 59-178 181-348 (354)
149 1ega_A Protein (GTP-binding pr 99.8 1.8E-20 6.3E-25 151.8 14.6 157 10-173 6-173 (301)
150 2hjg_A GTP-binding protein ENG 99.8 5.7E-22 2E-26 168.4 6.0 152 12-174 3-164 (436)
151 3j2k_7 ERF3, eukaryotic polype 99.8 2E-20 7E-25 158.8 14.8 155 8-167 13-217 (439)
152 3lxw_A GTPase IMAP family memb 99.8 1.4E-20 4.7E-25 148.4 12.4 163 9-175 18-208 (247)
153 2ged_A SR-beta, signal recogni 99.8 4.9E-21 1.7E-25 144.9 8.9 118 8-134 44-173 (193)
154 2qag_A Septin-2, protein NEDD5 99.8 1.2E-21 4E-26 162.5 5.6 162 10-177 35-235 (361)
155 3izy_P Translation initiation 99.8 9.3E-23 3.2E-27 175.9 -1.7 159 10-174 2-167 (537)
156 3p26_A Elongation factor 1 alp 99.8 1.9E-20 6.4E-25 161.0 12.5 151 11-165 32-228 (483)
157 1zcb_A G alpha I/13; GTP-bindi 99.8 2.5E-20 8.5E-25 154.1 12.7 125 52-178 194-356 (362)
158 1zun_B Sulfate adenylate trans 99.8 4.6E-20 1.6E-24 156.6 12.4 155 8-167 20-216 (434)
159 1g7s_A Translation initiation 99.8 1.3E-19 4.4E-24 158.5 13.7 157 11-174 4-217 (594)
160 2c78_A Elongation factor TU-A; 99.8 1.9E-20 6.5E-25 157.7 7.9 148 10-161 9-180 (405)
161 4dcu_A GTP-binding protein ENG 99.8 1.1E-20 3.7E-25 161.4 6.5 156 8-173 19-183 (456)
162 4fid_A G protein alpha subunit 99.8 5E-20 1.7E-24 150.4 10.0 116 60-175 160-328 (340)
163 3tr5_A RF-3, peptide chain rel 99.8 9.8E-20 3.4E-24 157.5 12.2 116 10-131 11-148 (528)
164 2elf_A Protein translation elo 99.8 6.6E-20 2.3E-24 152.3 10.7 147 14-176 23-181 (370)
165 1d2e_A Elongation factor TU (E 99.8 8.1E-20 2.8E-24 153.4 11.2 159 11-173 2-193 (397)
166 1azs_C GS-alpha; complex (lyas 99.8 3E-19 1E-23 148.9 14.1 125 52-178 210-388 (402)
167 1jny_A EF-1-alpha, elongation 99.8 1.2E-20 4.2E-25 160.1 5.5 155 10-167 4-205 (435)
168 2aka_B Dynamin-1; fusion prote 99.8 2.4E-20 8.1E-25 150.7 5.8 160 8-171 22-249 (299)
169 1r5b_A Eukaryotic peptide chai 99.8 2.4E-20 8.2E-25 159.5 5.7 155 10-166 41-243 (467)
170 3izq_1 HBS1P, elongation facto 99.8 7.2E-20 2.5E-24 160.9 8.5 154 10-165 165-362 (611)
171 1zo1_I IF2, translation initia 99.8 1.4E-21 4.7E-26 167.4 -2.5 153 10-171 2-163 (501)
172 3avx_A Elongation factor TS, e 99.8 3.2E-19 1.1E-23 163.3 10.7 160 9-172 293-483 (1289)
173 1pui_A ENGB, probable GTP-bind 99.8 1.1E-18 3.6E-23 133.8 12.0 156 10-174 24-198 (210)
174 3def_A T7I23.11 protein; chlor 99.8 3.6E-18 1.2E-22 135.7 14.9 123 10-135 34-169 (262)
175 1f60_A Elongation factor EEF1A 99.8 2.3E-19 7.8E-24 153.1 7.0 151 10-165 5-202 (458)
176 2j69_A Bacterial dynamin-like 99.8 4.1E-18 1.4E-22 152.0 14.5 165 11-178 68-328 (695)
177 2dy1_A Elongation factor G; tr 99.8 5.3E-18 1.8E-22 150.6 14.2 116 9-130 6-139 (665)
178 3t34_A Dynamin-related protein 99.8 6.7E-19 2.3E-23 146.0 7.5 158 11-171 33-257 (360)
179 1dar_A EF-G, elongation factor 99.8 1.6E-17 5.4E-22 148.1 16.4 125 1-131 1-143 (691)
180 3mca_A HBS1, elongation factor 99.8 4.7E-20 1.6E-24 161.6 -0.6 150 9-163 174-371 (592)
181 1udx_A The GTP-binding protein 99.7 1.4E-17 4.9E-22 139.8 13.4 160 14-177 159-327 (416)
182 1h65_A Chloroplast outer envel 99.7 1.2E-17 4.2E-22 133.2 11.2 122 10-134 37-171 (270)
183 2qnr_A Septin-2, protein NEDD5 99.7 8.4E-19 2.9E-23 142.0 4.2 162 9-175 15-214 (301)
184 1jwy_B Dynamin A GTPase domain 99.7 1.6E-17 5.4E-22 135.1 10.5 163 9-175 21-262 (315)
185 2h5e_A Peptide chain release f 99.7 2.1E-16 7.3E-21 136.7 17.3 116 10-131 11-148 (529)
186 1u0l_A Probable GTPase ENGC; p 99.7 5.2E-18 1.8E-22 137.3 5.6 134 27-171 32-169 (301)
187 2rdo_7 EF-G, elongation factor 99.7 4.8E-16 1.6E-20 138.8 18.4 121 7-131 5-148 (704)
188 2qag_C Septin-7; cell cycle, c 99.7 1.6E-17 5.4E-22 139.6 7.6 158 10-171 29-223 (418)
189 1wxq_A GTP-binding protein; st 99.7 2E-17 6.8E-22 138.5 7.7 85 13-97 1-114 (397)
190 2xex_A Elongation factor G; GT 99.7 4.6E-16 1.6E-20 138.7 16.9 118 8-131 6-141 (693)
191 2x2e_A Dynamin-1; nitration, h 99.7 6E-18 2.1E-22 139.9 1.1 159 10-171 29-254 (353)
192 2wsm_A Hydrogenase expression/ 99.6 1.9E-16 6.6E-21 122.2 6.3 155 11-176 29-215 (221)
193 1jal_A YCHF protein; nucleotid 99.6 5E-15 1.7E-19 122.0 14.0 147 12-158 2-240 (363)
194 2hf9_A Probable hydrogenase ni 99.6 6.7E-18 2.3E-22 130.9 -4.4 154 11-175 37-224 (226)
195 3vqt_A RF-3, peptide chain rel 99.6 5.3E-15 1.8E-19 128.5 13.1 116 10-131 29-166 (548)
196 2qpt_A EH domain-containing pr 99.6 1E-15 3.4E-20 133.2 7.6 126 4-132 57-233 (550)
197 3p32_A Probable GTPase RV1496/ 99.6 7E-16 2.4E-20 127.6 6.2 103 61-175 172-284 (355)
198 1n0u_A EF-2, elongation factor 99.6 7.9E-15 2.7E-19 133.3 10.1 118 9-130 16-163 (842)
199 2dby_A GTP-binding protein; GD 99.6 2.4E-14 8.2E-19 118.5 11.1 156 13-168 2-255 (368)
200 4a9a_A Ribosome-interacting GT 99.5 1.5E-13 5.2E-18 113.7 15.0 157 6-166 66-239 (376)
201 2www_A Methylmalonic aciduria 99.5 5.5E-15 1.9E-19 121.9 4.2 102 61-174 167-278 (349)
202 3zvr_A Dynamin-1; hydrolase, D 99.5 6.8E-14 2.3E-18 124.7 10.2 158 10-171 49-274 (772)
203 1yrb_A ATP(GTP)binding protein 99.5 2.6E-13 8.9E-18 107.2 10.8 111 61-174 109-256 (262)
204 2p67_A LAO/AO transport system 99.5 2.2E-14 7.4E-19 118.0 4.1 103 61-174 149-260 (341)
205 3j25_A Tetracycline resistance 99.5 1.5E-14 5.1E-19 127.9 3.3 116 12-131 2-133 (638)
206 4fn5_A EF-G 1, elongation fact 99.5 1.8E-12 6.2E-17 116.0 16.1 118 9-130 10-150 (709)
207 2yv5_A YJEQ protein; hydrolase 99.4 4.7E-13 1.6E-17 108.2 8.2 98 71-171 66-165 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 2.3E-12 8E-17 105.6 9.6 103 61-174 148-260 (337)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.1E-10 3.8E-15 97.2 15.8 87 10-96 18-127 (392)
210 3l82_B F-box only protein 4; T 99.3 3.6E-12 1.2E-16 96.3 4.8 102 70-174 111-222 (227)
211 2ohf_A Protein OLA1, GTP-bindi 99.2 5.5E-12 1.9E-16 104.8 5.7 88 10-97 20-129 (396)
212 3l2o_B F-box only protein 4; s 99.1 7.5E-11 2.6E-15 93.3 7.0 104 69-175 195-308 (312)
213 3ec1_A YQEH GTPase; atnos1, at 98.9 4.2E-11 1.4E-15 99.3 -1.6 140 13-162 163-318 (369)
214 3h2y_A GTPase family protein; 98.9 3.2E-09 1.1E-13 88.0 9.6 96 70-172 55-157 (368)
215 2qag_B Septin-6, protein NEDD5 98.9 3.1E-09 1.1E-13 89.1 8.6 115 12-131 42-190 (427)
216 3h2y_A GTPase family protein; 98.9 5.1E-11 1.7E-15 98.8 -3.0 136 13-156 161-311 (368)
217 2j37_W Signal recognition part 98.9 1.4E-09 4.7E-14 93.3 4.4 152 10-172 99-310 (504)
218 3sop_A Neuronal-specific septi 98.8 5.8E-09 2E-13 82.8 7.0 137 12-153 2-178 (270)
219 3ec1_A YQEH GTPase; atnos1, at 98.8 1.2E-08 4E-13 84.6 7.9 97 70-173 57-160 (369)
220 1puj_A YLQF, conserved hypothe 98.7 4.6E-08 1.6E-12 78.1 8.2 101 65-175 3-106 (282)
221 1tq4_A IIGP1, interferon-induc 98.6 7.7E-07 2.6E-11 74.6 14.2 158 12-176 69-254 (413)
222 1puj_A YLQF, conserved hypothe 98.5 1.3E-07 4.5E-12 75.4 5.1 58 10-72 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.4 8.1E-08 2.8E-12 75.9 2.7 57 13-73 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.4 5.4E-07 1.9E-11 75.9 6.6 86 61-156 183-274 (443)
225 2v3c_C SRP54, signal recogniti 98.3 5.2E-07 1.8E-11 76.1 5.4 83 61-154 181-271 (432)
226 3cnl_A YLQF, putative uncharac 98.2 5.3E-07 1.8E-11 71.1 3.6 92 68-172 4-98 (262)
227 3szr_A Interferon-induced GTP- 98.2 4.2E-06 1.5E-10 73.6 9.3 25 14-38 47-71 (608)
228 1f5n_A Interferon-induced guan 98.2 1.2E-06 4E-11 76.5 4.7 63 10-72 36-102 (592)
229 1t9h_A YLOQ, probable GTPase E 98.1 9.7E-07 3.3E-11 71.1 3.0 91 75-168 77-170 (307)
230 3kl4_A SRP54, signal recogniti 98.1 8.8E-07 3E-11 74.6 2.8 90 61-162 180-277 (433)
231 1j8m_F SRP54, signal recogniti 98.0 9E-06 3.1E-10 65.2 6.8 91 61-164 181-280 (297)
232 2rcn_A Probable GTPase ENGC; Y 97.9 3.2E-05 1.1E-09 63.5 8.3 82 81-168 127-212 (358)
233 1bif_A 6-phosphofructo-2-kinas 97.9 1.2E-06 4.2E-11 74.8 -1.3 110 10-124 37-156 (469)
234 3e70_C DPA, signal recognition 97.8 3.2E-05 1.1E-09 62.9 6.1 91 62-164 213-309 (328)
235 3q5d_A Atlastin-1; G protein, 97.6 0.00034 1.2E-08 59.1 9.6 26 10-35 65-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.3 0.00017 5.8E-09 53.3 3.3 24 13-36 1-24 (178)
237 2xxa_A Signal recognition part 97.2 0.00084 2.9E-08 56.6 7.7 80 61-151 184-270 (433)
238 1kgd_A CASK, peripheral plasma 97.1 0.00023 8E-09 52.4 3.1 22 14-35 7-28 (180)
239 1lvg_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 52.8 3.1 21 14-34 6-26 (198)
240 3tr0_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 52.1 3.1 22 14-35 9-30 (205)
241 1t9h_A YLOQ, probable GTPase E 97.0 0.00015 5.1E-09 58.3 0.8 23 14-36 175-197 (307)
242 2yv5_A YJEQ protein; hydrolase 97.0 0.0015 5E-08 52.4 6.5 22 14-36 167-188 (302)
243 3a00_A Guanylate kinase, GMP k 97.0 0.00042 1.4E-08 51.3 3.0 21 15-35 4-24 (186)
244 1zp6_A Hypothetical protein AT 97.0 0.00042 1.4E-08 51.3 2.9 23 13-35 10-32 (191)
245 1znw_A Guanylate kinase, GMP k 96.9 0.0005 1.7E-08 51.8 3.1 23 14-36 22-44 (207)
246 3c8u_A Fructokinase; YP_612366 96.9 0.00054 1.8E-08 51.7 3.2 27 10-36 20-46 (208)
247 4gp7_A Metallophosphoesterase; 96.9 0.00045 1.6E-08 50.5 2.6 20 14-33 11-30 (171)
248 1s96_A Guanylate kinase, GMP k 96.9 0.00055 1.9E-08 52.3 3.1 23 14-36 18-40 (219)
249 1z6g_A Guanylate kinase; struc 96.9 0.00056 1.9E-08 52.1 3.1 22 14-35 25-46 (218)
250 3ney_A 55 kDa erythrocyte memb 96.9 0.0006 2.1E-08 51.2 3.1 23 13-35 20-42 (197)
251 2ffh_A Protein (FFH); SRP54, s 96.8 0.0015 5.1E-08 54.8 5.5 85 61-155 181-271 (425)
252 3tau_A Guanylate kinase, GMP k 96.8 0.00068 2.3E-08 51.2 3.1 24 13-36 9-32 (208)
253 1kag_A SKI, shikimate kinase I 96.8 0.00076 2.6E-08 49.0 3.1 23 13-35 5-27 (173)
254 3lw7_A Adenylate kinase relate 96.8 0.00081 2.8E-08 48.6 3.1 20 13-32 2-21 (179)
255 1ex7_A Guanylate kinase; subst 96.8 0.00081 2.8E-08 50.0 3.1 21 15-35 4-24 (186)
256 1ly1_A Polynucleotide kinase; 96.7 0.00094 3.2E-08 48.7 3.4 22 13-34 3-24 (181)
257 2j41_A Guanylate kinase; GMP, 96.7 0.0008 2.7E-08 50.3 3.1 24 13-36 7-30 (207)
258 3tif_A Uncharacterized ABC tra 96.7 0.00079 2.7E-08 52.0 3.0 23 14-36 33-55 (235)
259 1htw_A HI0065; nucleotide-bind 96.7 0.00089 3E-08 48.4 3.1 23 14-36 35-57 (158)
260 2qor_A Guanylate kinase; phosp 96.7 0.00088 3E-08 50.3 3.1 25 11-35 11-35 (204)
261 3kb2_A SPBC2 prophage-derived 96.7 0.00097 3.3E-08 48.2 3.1 22 14-35 3-24 (173)
262 3fb4_A Adenylate kinase; psych 96.7 0.00093 3.2E-08 50.5 3.1 22 13-34 1-22 (216)
263 2bdt_A BH3686; alpha-beta prot 96.7 0.00095 3.3E-08 49.3 3.1 21 14-34 4-24 (189)
264 4eun_A Thermoresistant glucoki 96.7 0.00099 3.4E-08 49.8 3.1 22 13-34 30-51 (200)
265 3dl0_A Adenylate kinase; phosp 96.7 0.001 3.5E-08 50.3 3.1 22 13-34 1-22 (216)
266 1uf9_A TT1252 protein; P-loop, 96.7 0.0012 4.2E-08 49.1 3.6 25 11-35 7-31 (203)
267 2rcn_A Probable GTPase ENGC; Y 96.6 0.001 3.4E-08 54.6 3.1 24 14-37 217-240 (358)
268 3asz_A Uridine kinase; cytidin 96.6 0.0011 3.7E-08 49.9 3.1 24 12-35 6-29 (211)
269 2pcj_A ABC transporter, lipopr 96.6 0.00097 3.3E-08 51.0 2.8 23 14-36 32-54 (224)
270 2bbw_A Adenylate kinase 4, AK4 96.6 0.0012 4.1E-08 51.1 3.3 22 12-33 27-48 (246)
271 2onk_A Molybdate/tungstate ABC 96.6 0.0012 4E-08 51.2 3.2 23 14-36 26-48 (240)
272 2cbz_A Multidrug resistance-as 96.6 0.0013 4.5E-08 50.8 3.3 23 14-36 33-55 (237)
273 1sgw_A Putative ABC transporte 96.6 0.0013 4.3E-08 50.1 3.1 23 14-36 37-59 (214)
274 1b0u_A Histidine permease; ABC 96.6 0.0012 4.1E-08 51.8 3.1 23 14-36 34-56 (262)
275 1knq_A Gluconate kinase; ALFA/ 96.6 0.0017 5.8E-08 47.3 3.7 22 13-34 9-30 (175)
276 2chg_A Replication factor C sm 96.6 0.0043 1.5E-07 46.3 6.1 22 14-35 40-61 (226)
277 3sr0_A Adenylate kinase; phosp 96.6 0.0014 4.7E-08 49.6 3.2 22 13-34 1-22 (206)
278 3gfo_A Cobalt import ATP-bindi 96.6 0.0012 4.3E-08 52.1 3.1 23 14-36 36-58 (275)
279 3t61_A Gluconokinase; PSI-biol 96.6 0.0013 4.4E-08 49.2 3.1 23 13-35 19-41 (202)
280 2if2_A Dephospho-COA kinase; a 96.6 0.0013 4.5E-08 49.1 3.1 22 13-34 2-23 (204)
281 1mv5_A LMRA, multidrug resista 96.5 0.0015 5E-08 50.7 3.3 23 14-36 30-52 (243)
282 1cke_A CK, MSSA, protein (cyti 96.5 0.0015 5E-08 49.7 3.3 22 13-34 6-27 (227)
283 3vaa_A Shikimate kinase, SK; s 96.5 0.0015 5.3E-08 48.7 3.3 22 13-34 26-47 (199)
284 2eyu_A Twitching motility prot 96.5 0.0013 4.6E-08 51.5 3.1 22 14-35 27-48 (261)
285 2jaq_A Deoxyguanosine kinase; 96.5 0.0015 5.2E-08 48.6 3.3 21 14-34 2-22 (205)
286 2ff7_A Alpha-hemolysin translo 96.5 0.0015 5E-08 50.8 3.3 23 14-36 37-59 (247)
287 1qhx_A CPT, protein (chloramph 96.5 0.0014 4.8E-08 47.8 3.0 23 13-35 4-26 (178)
288 1jjv_A Dephospho-COA kinase; P 96.5 0.0017 5.8E-08 48.6 3.5 22 13-34 3-24 (206)
289 3ec2_A DNA replication protein 96.5 0.0013 4.5E-08 48.2 2.8 24 13-36 39-62 (180)
290 1g6h_A High-affinity branched- 96.5 0.0014 4.6E-08 51.3 3.0 23 14-36 35-57 (257)
291 4g1u_C Hemin import ATP-bindin 96.5 0.0013 4.6E-08 51.7 3.0 23 14-36 39-61 (266)
292 2i3b_A HCR-ntpase, human cance 96.5 0.0013 4.5E-08 49.0 2.8 22 14-35 3-24 (189)
293 2pze_A Cystic fibrosis transme 96.5 0.0016 5.4E-08 50.0 3.3 23 14-36 36-58 (229)
294 2v9p_A Replication protein E1; 96.5 0.0015 5.2E-08 52.4 3.3 22 14-35 128-149 (305)
295 3co5_A Putative two-component 96.5 0.0065 2.2E-07 42.8 6.3 22 13-34 28-49 (143)
296 1u0l_A Probable GTPase ENGC; p 96.5 0.0016 5.6E-08 52.0 3.5 24 14-37 171-194 (301)
297 3b85_A Phosphate starvation-in 96.5 0.0014 4.8E-08 49.6 2.9 22 14-35 24-45 (208)
298 1nks_A Adenylate kinase; therm 96.5 0.0016 5.5E-08 47.9 3.2 21 14-34 3-23 (194)
299 3cm0_A Adenylate kinase; ATP-b 96.5 0.002 6.7E-08 47.3 3.6 23 12-34 4-26 (186)
300 2olj_A Amino acid ABC transpor 96.5 0.0015 5.1E-08 51.3 3.1 23 14-36 52-74 (263)
301 1ji0_A ABC transporter; ATP bi 96.5 0.0015 5.1E-08 50.6 3.0 23 14-36 34-56 (240)
302 1tev_A UMP-CMP kinase; ploop, 96.5 0.0018 6.2E-08 47.7 3.4 23 12-34 3-25 (196)
303 3iij_A Coilin-interacting nucl 96.5 0.0015 5.2E-08 47.8 3.0 24 11-34 10-33 (180)
304 1vpl_A ABC transporter, ATP-bi 96.5 0.0016 5.3E-08 51.0 3.1 23 14-36 43-65 (256)
305 2rhm_A Putative kinase; P-loop 96.5 0.002 6.8E-08 47.5 3.5 23 12-34 5-27 (193)
306 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0016 5.5E-08 50.7 3.1 22 14-35 31-52 (250)
307 3uie_A Adenylyl-sulfate kinase 96.5 0.0017 5.7E-08 48.6 3.1 24 12-35 25-48 (200)
308 3tlx_A Adenylate kinase 2; str 96.5 0.0021 7.3E-08 49.7 3.8 25 10-34 27-51 (243)
309 2ghi_A Transport protein; mult 96.4 0.0017 5.9E-08 50.8 3.3 22 14-35 48-69 (260)
310 2qi9_C Vitamin B12 import ATP- 96.4 0.0016 5.6E-08 50.7 3.1 23 14-36 28-50 (249)
311 1np6_A Molybdopterin-guanine d 96.4 0.0018 6.3E-08 47.5 3.1 24 12-35 6-29 (174)
312 1e4v_A Adenylate kinase; trans 96.4 0.0016 5.6E-08 49.1 2.9 22 13-34 1-22 (214)
313 1kht_A Adenylate kinase; phosp 96.4 0.0019 6.4E-08 47.5 3.1 22 13-34 4-25 (192)
314 3aez_A Pantothenate kinase; tr 96.4 0.003 1E-07 50.8 4.6 28 9-36 87-114 (312)
315 2zu0_C Probable ATP-dependent 96.4 0.0018 6.2E-08 50.9 3.2 22 14-35 48-69 (267)
316 2ixe_A Antigen peptide transpo 96.4 0.0019 6.5E-08 50.9 3.3 23 14-36 47-69 (271)
317 3trf_A Shikimate kinase, SK; a 96.4 0.002 6.7E-08 47.3 3.2 22 13-34 6-27 (185)
318 2ihy_A ABC transporter, ATP-bi 96.4 0.0019 6.6E-08 51.1 3.3 23 14-36 49-71 (279)
319 3lnc_A Guanylate kinase, GMP k 96.4 0.0011 3.8E-08 50.7 1.8 22 14-35 29-51 (231)
320 2cdn_A Adenylate kinase; phosp 96.4 0.0022 7.6E-08 47.8 3.4 24 11-34 19-42 (201)
321 4a74_A DNA repair and recombin 96.4 0.0017 5.9E-08 49.2 2.9 22 14-35 27-48 (231)
322 2nq2_C Hypothetical ABC transp 96.4 0.0019 6.4E-08 50.4 3.0 23 14-36 33-55 (253)
323 2ehv_A Hypothetical protein PH 96.4 0.002 6.8E-08 49.5 3.1 20 14-33 32-51 (251)
324 2plr_A DTMP kinase, probable t 96.4 0.0024 8.1E-08 47.8 3.5 23 12-34 4-26 (213)
325 2yz2_A Putative ABC transporte 96.3 0.002 6.7E-08 50.7 3.0 23 14-36 35-57 (266)
326 2pt5_A Shikimate kinase, SK; a 96.3 0.0023 7.7E-08 46.2 3.2 21 14-34 2-22 (168)
327 1aky_A Adenylate kinase; ATP:A 96.3 0.0021 7.2E-08 48.7 3.1 23 12-34 4-26 (220)
328 2qt1_A Nicotinamide riboside k 96.3 0.0028 9.6E-08 47.5 3.7 25 11-35 20-44 (207)
329 2pjz_A Hypothetical protein ST 96.3 0.0024 8.1E-08 50.2 3.3 23 14-36 32-54 (263)
330 1y63_A LMAJ004144AAA protein; 96.3 0.0026 9E-08 46.8 3.3 24 12-35 10-33 (184)
331 3tqc_A Pantothenate kinase; bi 96.3 0.0031 1.1E-07 50.9 3.9 26 9-34 89-114 (321)
332 1sxj_E Activator 1 40 kDa subu 96.3 0.015 5.1E-07 47.1 8.0 21 15-35 39-59 (354)
333 1via_A Shikimate kinase; struc 96.3 0.0021 7.2E-08 46.8 2.6 21 14-34 6-26 (175)
334 1zd8_A GTP:AMP phosphotransfer 96.3 0.0023 7.8E-08 48.8 2.9 23 12-34 7-29 (227)
335 2jeo_A Uridine-cytidine kinase 96.3 0.0029 9.9E-08 48.9 3.5 23 12-34 25-47 (245)
336 1lw7_A Transcriptional regulat 96.2 0.0021 7.1E-08 52.8 2.8 24 12-35 170-193 (365)
337 2kjq_A DNAA-related protein; s 96.2 0.002 6.9E-08 46.0 2.3 23 14-36 38-60 (149)
338 2f1r_A Molybdopterin-guanine d 96.2 0.0012 4.2E-08 48.3 1.2 22 14-35 4-25 (171)
339 2xb4_A Adenylate kinase; ATP-b 96.2 0.0027 9.1E-08 48.4 3.1 21 14-34 2-22 (223)
340 1qf9_A UMP/CMP kinase, protein 96.2 0.0033 1.1E-07 46.2 3.5 23 12-34 6-28 (194)
341 1gvn_B Zeta; postsegregational 96.2 0.0033 1.1E-07 49.9 3.6 25 10-34 31-55 (287)
342 3jvv_A Twitching mobility prot 96.2 0.0026 9E-08 52.2 3.1 22 14-35 125-146 (356)
343 1odf_A YGR205W, hypothetical 3 96.2 0.0039 1.3E-07 49.7 3.9 26 9-34 28-53 (290)
344 2v54_A DTMP kinase, thymidylat 96.2 0.0034 1.2E-07 46.7 3.4 24 12-35 4-27 (204)
345 2x8a_A Nuclear valosin-contain 96.2 0.0028 9.5E-08 50.0 3.1 21 15-35 47-67 (274)
346 3nh6_A ATP-binding cassette SU 96.2 0.0019 6.4E-08 51.9 2.0 22 14-35 82-103 (306)
347 4ido_A Atlastin-1; GTPase, GTP 96.2 0.058 2E-06 45.5 11.1 24 10-33 65-88 (457)
348 2pbr_A DTMP kinase, thymidylat 96.2 0.003 1E-07 46.5 3.1 21 14-34 2-22 (195)
349 3uc9_A Increased recombination 96.2 0.0081 2.8E-07 45.9 5.4 23 14-36 29-53 (233)
350 1ukz_A Uridylate kinase; trans 96.2 0.0038 1.3E-07 46.5 3.6 23 12-34 15-37 (203)
351 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0027 9.1E-08 52.1 2.9 22 15-36 33-54 (359)
352 3umf_A Adenylate kinase; rossm 96.1 0.0043 1.5E-07 47.2 3.8 21 14-34 31-51 (217)
353 2bbs_A Cystic fibrosis transme 96.1 0.0029 9.9E-08 50.4 3.0 23 14-36 66-88 (290)
354 1zak_A Adenylate kinase; ATP:A 96.1 0.0023 7.8E-08 48.6 2.3 23 12-34 5-27 (222)
355 1z47_A CYSA, putative ABC-tran 96.1 0.0031 1.1E-07 51.7 3.1 23 14-36 43-65 (355)
356 2ze6_A Isopentenyl transferase 96.1 0.0033 1.1E-07 48.9 3.1 21 14-34 3-23 (253)
357 1ixz_A ATP-dependent metallopr 96.1 0.0033 1.1E-07 48.7 3.1 22 14-35 51-72 (254)
358 2p5t_B PEZT; postsegregational 96.1 0.0029 1E-07 49.1 2.8 26 9-34 29-54 (253)
359 2c95_A Adenylate kinase 1; tra 96.1 0.0032 1.1E-07 46.5 2.9 23 12-34 9-31 (196)
360 2yyz_A Sugar ABC transporter, 96.1 0.0032 1.1E-07 51.6 3.1 23 14-36 31-53 (359)
361 1rz3_A Hypothetical protein rb 96.1 0.0042 1.4E-07 46.4 3.5 25 10-34 20-44 (201)
362 2vli_A Antibiotic resistance p 96.1 0.0023 8E-08 46.7 2.1 23 12-34 5-27 (183)
363 2z0h_A DTMP kinase, thymidylat 96.1 0.0036 1.2E-07 46.3 3.1 22 14-35 2-23 (197)
364 3tui_C Methionine import ATP-b 96.1 0.0034 1.1E-07 51.6 3.2 23 14-36 56-78 (366)
365 2it1_A 362AA long hypothetical 96.1 0.0034 1.1E-07 51.6 3.2 23 14-36 31-53 (362)
366 3rlf_A Maltose/maltodextrin im 96.1 0.0034 1.2E-07 51.9 3.2 23 14-36 31-53 (381)
367 1uj2_A Uridine-cytidine kinase 96.1 0.0039 1.3E-07 48.4 3.3 25 10-34 20-44 (252)
368 3be4_A Adenylate kinase; malar 96.1 0.0034 1.2E-07 47.5 2.9 22 13-34 6-27 (217)
369 1jbk_A CLPB protein; beta barr 96.1 0.0041 1.4E-07 45.2 3.3 23 13-35 44-66 (195)
370 2bwj_A Adenylate kinase 5; pho 96.1 0.0035 1.2E-07 46.4 2.9 23 12-34 12-34 (199)
371 1vht_A Dephospho-COA kinase; s 96.0 0.0043 1.5E-07 46.9 3.5 23 12-34 4-26 (218)
372 2wwf_A Thymidilate kinase, put 96.0 0.0038 1.3E-07 46.7 3.2 23 12-34 10-32 (212)
373 1e6c_A Shikimate kinase; phosp 96.0 0.0037 1.3E-07 45.2 3.0 21 14-34 4-24 (173)
374 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0041 1.4E-07 48.6 3.4 22 13-34 5-26 (260)
375 2yvu_A Probable adenylyl-sulfa 96.0 0.0055 1.9E-07 45.0 3.9 25 11-35 12-36 (186)
376 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.0032 1.1E-07 51.1 2.8 23 14-36 173-195 (330)
377 1v43_A Sugar-binding transport 96.0 0.0037 1.3E-07 51.6 3.2 23 14-36 39-61 (372)
378 1g29_1 MALK, maltose transport 96.0 0.0036 1.2E-07 51.6 3.1 23 14-36 31-53 (372)
379 1sq5_A Pantothenate kinase; P- 96.0 0.0046 1.6E-07 49.6 3.7 26 10-35 78-103 (308)
380 1nn5_A Similar to deoxythymidy 96.0 0.0037 1.3E-07 46.9 2.9 23 12-34 9-31 (215)
381 1xjc_A MOBB protein homolog; s 96.0 0.0043 1.5E-07 45.3 3.1 23 13-35 5-27 (169)
382 2gza_A Type IV secretion syste 96.0 0.0033 1.1E-07 51.6 2.8 22 14-35 177-198 (361)
383 2ewv_A Twitching motility prot 96.0 0.004 1.4E-07 51.4 3.3 21 14-34 138-158 (372)
384 2iyv_A Shikimate kinase, SK; t 96.0 0.0039 1.3E-07 45.7 3.0 21 14-34 4-24 (184)
385 1rj9_A FTSY, signal recognitio 96.0 0.0039 1.3E-07 50.0 3.1 84 62-155 186-281 (304)
386 1ak2_A Adenylate kinase isoenz 96.0 0.0043 1.5E-07 47.5 3.2 23 12-34 16-38 (233)
387 3te6_A Regulatory protein SIR3 96.0 0.0092 3.2E-07 48.1 5.3 25 11-35 44-68 (318)
388 1gtv_A TMK, thymidylate kinase 96.0 0.0016 5.3E-08 49.0 0.6 21 14-34 2-22 (214)
389 1zuh_A Shikimate kinase; alpha 95.9 0.0049 1.7E-07 44.4 3.3 22 13-34 8-29 (168)
390 4e22_A Cytidylate kinase; P-lo 95.9 0.0046 1.6E-07 48.0 3.2 21 13-33 28-48 (252)
391 2vp4_A Deoxynucleoside kinase; 95.9 0.0042 1.4E-07 47.5 2.9 25 11-35 19-43 (230)
392 2pez_A Bifunctional 3'-phospho 95.9 0.0048 1.6E-07 45.0 3.1 23 13-35 6-28 (179)
393 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0046 1.6E-07 46.8 3.1 22 14-35 25-46 (235)
394 4eaq_A DTMP kinase, thymidylat 95.9 0.007 2.4E-07 46.4 4.1 25 11-35 25-49 (229)
395 1p9r_A General secretion pathw 95.9 0.0042 1.4E-07 52.1 3.1 23 14-36 169-191 (418)
396 2grj_A Dephospho-COA kinase; T 95.9 0.0064 2.2E-07 45.3 3.7 25 11-35 11-35 (192)
397 3b9q_A Chloroplast SRP recepto 95.9 0.0047 1.6E-07 49.5 3.1 23 12-34 100-122 (302)
398 1iy2_A ATP-dependent metallopr 95.9 0.0048 1.6E-07 48.5 3.1 22 14-35 75-96 (278)
399 1in4_A RUVB, holliday junction 95.8 0.0047 1.6E-07 50.1 3.1 22 14-35 53-74 (334)
400 3d31_A Sulfate/molybdate ABC t 95.8 0.0031 1.1E-07 51.5 2.0 23 14-36 28-50 (348)
401 3r20_A Cytidylate kinase; stru 95.8 0.0054 1.9E-07 47.2 3.1 24 11-34 8-31 (233)
402 2oap_1 GSPE-2, type II secreti 95.8 0.0046 1.6E-07 53.2 3.0 23 14-36 262-284 (511)
403 3gd7_A Fusion complex of cysti 95.8 0.0047 1.6E-07 51.2 2.9 22 14-35 49-70 (390)
404 2f6r_A COA synthase, bifunctio 95.7 0.0068 2.3E-07 47.9 3.6 24 10-33 73-96 (281)
405 2p65_A Hypothetical protein PF 95.7 0.0052 1.8E-07 44.6 2.5 24 12-35 43-66 (187)
406 1cr0_A DNA primase/helicase; R 95.7 0.0056 1.9E-07 48.6 2.9 23 14-36 37-59 (296)
407 1lv7_A FTSH; alpha/beta domain 95.7 0.0064 2.2E-07 47.1 3.1 24 12-35 45-68 (257)
408 1m7g_A Adenylylsulfate kinase; 95.7 0.0067 2.3E-07 45.6 3.1 23 12-34 25-47 (211)
409 1oxx_K GLCV, glucose, ABC tran 95.6 0.0031 1E-07 51.7 1.2 23 14-36 33-55 (353)
410 3bos_A Putative DNA replicatio 95.6 0.0075 2.6E-07 45.7 3.3 24 12-35 52-75 (242)
411 2cvh_A DNA repair and recombin 95.6 0.0071 2.4E-07 45.4 3.1 21 14-34 22-42 (220)
412 4dzz_A Plasmid partitioning pr 95.6 0.024 8.3E-07 42.0 6.0 85 61-152 76-162 (206)
413 3kta_A Chromosome segregation 95.6 0.0068 2.3E-07 44.3 2.9 21 14-34 28-48 (182)
414 2w58_A DNAI, primosome compone 95.6 0.008 2.7E-07 44.7 3.3 24 13-36 55-78 (202)
415 1n0w_A DNA repair protein RAD5 95.6 0.0073 2.5E-07 46.1 3.1 22 14-35 26-47 (243)
416 3d3q_A TRNA delta(2)-isopenten 95.6 0.0077 2.6E-07 48.9 3.3 22 13-34 8-29 (340)
417 2npi_A Protein CLP1; CLP1-PCF1 95.6 0.0054 1.8E-07 52.0 2.5 22 14-35 140-161 (460)
418 1ltq_A Polynucleotide kinase; 95.6 0.0081 2.8E-07 47.7 3.4 22 13-34 3-24 (301)
419 1q3t_A Cytidylate kinase; nucl 95.5 0.0085 2.9E-07 45.9 3.3 27 8-34 12-38 (236)
420 2og2_A Putative signal recogni 95.5 0.0077 2.6E-07 49.4 3.1 23 12-34 157-179 (359)
421 3nwj_A ATSK2; P loop, shikimat 95.5 0.0081 2.8E-07 46.7 3.1 22 13-34 49-70 (250)
422 2yhs_A FTSY, cell division pro 95.5 0.008 2.7E-07 51.3 3.1 23 12-34 293-315 (503)
423 1p5z_B DCK, deoxycytidine kina 95.4 0.0061 2.1E-07 47.6 2.2 26 10-35 22-47 (263)
424 3n70_A Transport activator; si 95.4 0.0093 3.2E-07 42.1 3.0 25 12-36 24-48 (145)
425 1nij_A Hypothetical protein YJ 95.4 0.009 3.1E-07 48.1 3.2 25 12-36 4-28 (318)
426 2obl_A ESCN; ATPase, hydrolase 95.4 0.0088 3E-07 48.8 3.1 23 14-36 73-95 (347)
427 3pfi_A Holliday junction ATP-d 95.4 0.028 9.7E-07 45.2 6.1 23 13-35 56-78 (338)
428 1svm_A Large T antigen; AAA+ f 95.4 0.009 3.1E-07 49.3 3.1 22 13-34 170-191 (377)
429 3gmt_A Adenylate kinase; ssgci 95.3 0.012 4E-07 45.2 3.2 24 11-34 7-30 (230)
430 1njg_A DNA polymerase III subu 95.2 0.011 3.7E-07 44.6 3.1 21 14-34 47-67 (250)
431 3euj_A Chromosome partition pr 95.2 0.01 3.5E-07 50.5 3.1 21 14-34 31-51 (483)
432 3b9p_A CG5977-PA, isoform A; A 95.2 0.011 3.6E-07 46.8 3.0 24 12-35 54-77 (297)
433 1yqt_A RNAse L inhibitor; ATP- 95.2 0.012 3.9E-07 51.0 3.4 23 14-36 49-71 (538)
434 2qmh_A HPR kinase/phosphorylas 95.2 0.012 4.2E-07 44.0 3.1 24 13-36 35-58 (205)
435 3h4m_A Proteasome-activating n 95.2 0.011 3.7E-07 46.4 3.0 24 12-35 51-74 (285)
436 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.012 4E-07 45.5 3.1 23 12-34 39-61 (262)
437 1f2t_A RAD50 ABC-ATPase; DNA d 95.1 0.014 4.7E-07 41.5 3.1 19 15-33 26-44 (149)
438 3b60_A Lipid A export ATP-bind 95.1 0.011 3.8E-07 51.6 3.1 22 14-35 371-392 (582)
439 1tue_A Replication protein E1; 95.1 0.011 3.6E-07 44.6 2.5 21 14-34 60-80 (212)
440 1nlf_A Regulatory protein REPA 95.1 0.011 3.9E-07 46.4 2.9 21 14-34 32-52 (279)
441 2dpy_A FLII, flagellum-specifi 95.1 0.012 4.2E-07 49.5 3.1 23 14-36 159-181 (438)
442 3cf0_A Transitional endoplasmi 95.1 0.012 4.3E-07 46.8 3.0 23 13-35 50-72 (301)
443 3ake_A Cytidylate kinase; CMP 95.1 0.014 4.9E-07 43.3 3.2 21 14-34 4-24 (208)
444 3ozx_A RNAse L inhibitor; ATP 95.0 0.012 4.2E-07 50.9 3.1 23 14-36 27-49 (538)
445 3u61_B DNA polymerase accessor 95.0 0.22 7.5E-06 39.7 10.4 21 15-35 51-71 (324)
446 3b5x_A Lipid A export ATP-bind 95.0 0.013 4.4E-07 51.2 3.2 23 14-36 371-393 (582)
447 1l8q_A Chromosomal replication 95.0 0.013 4.5E-07 47.0 3.0 23 13-35 38-60 (324)
448 3zvl_A Bifunctional polynucleo 95.0 0.013 4.4E-07 49.0 3.0 23 12-34 258-280 (416)
449 3t15_A Ribulose bisphosphate c 95.0 0.014 4.6E-07 46.4 3.0 25 11-35 35-59 (293)
450 2yl4_A ATP-binding cassette SU 94.9 0.012 4E-07 51.6 2.7 22 14-35 372-393 (595)
451 3eie_A Vacuolar protein sortin 94.9 0.017 5.8E-07 46.4 3.5 26 10-35 49-74 (322)
452 3j16_B RLI1P; ribosome recycli 94.9 0.018 6.3E-07 50.5 3.9 24 14-37 105-128 (608)
453 3qf4_B Uncharacterized ABC tra 94.9 0.013 4.3E-07 51.5 2.8 22 14-35 383-404 (598)
454 3syl_A Protein CBBX; photosynt 94.9 0.018 6.2E-07 45.7 3.5 24 11-34 66-89 (309)
455 3cwq_A Para family chromosome 94.8 0.16 5.6E-06 37.9 8.5 85 61-152 68-153 (209)
456 1d2n_A N-ethylmaleimide-sensit 94.8 0.024 8.3E-07 44.2 4.0 26 10-35 62-87 (272)
457 2dr3_A UPF0273 protein PH0284; 94.8 0.016 5.6E-07 44.2 2.9 21 14-34 25-45 (247)
458 3ea0_A ATPase, para family; al 94.8 0.24 8.1E-06 37.6 9.5 89 61-157 119-207 (245)
459 3bk7_A ABC transporter ATP-bin 94.8 0.022 7.7E-07 50.0 4.0 23 14-36 119-141 (607)
460 1ofh_A ATP-dependent HSL prote 94.8 0.018 6.1E-07 45.6 3.1 24 12-35 50-73 (310)
461 4a82_A Cystic fibrosis transme 94.8 0.011 3.8E-07 51.6 2.1 22 14-35 369-390 (578)
462 3ozx_A RNAse L inhibitor; ATP 94.7 0.016 5.6E-07 50.1 3.1 23 14-36 296-318 (538)
463 2qby_A CDC6 homolog 1, cell di 94.7 0.016 5.5E-07 47.1 2.9 23 13-35 46-68 (386)
464 1yqt_A RNAse L inhibitor; ATP- 94.7 0.019 6.5E-07 49.7 3.4 23 14-36 314-336 (538)
465 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.021 7.1E-07 46.0 3.3 25 11-35 44-68 (322)
466 3crm_A TRNA delta(2)-isopenten 94.6 0.021 7E-07 46.1 3.2 22 13-34 6-27 (323)
467 3bk7_A ABC transporter ATP-bin 94.6 0.02 6.9E-07 50.3 3.4 23 14-36 384-406 (607)
468 4fcw_A Chaperone protein CLPB; 94.6 0.021 7.3E-07 45.3 3.3 24 13-36 48-71 (311)
469 1c9k_A COBU, adenosylcobinamid 94.6 0.02 6.9E-07 42.1 2.9 21 15-35 2-22 (180)
470 3qf4_A ABC transporter, ATP-bi 94.6 0.014 4.9E-07 51.0 2.4 22 14-35 371-392 (587)
471 1fnn_A CDC6P, cell division co 94.6 0.02 6.8E-07 46.8 3.1 23 14-36 46-68 (389)
472 1pzn_A RAD51, DNA repair and r 94.6 0.018 6.2E-07 47.0 2.9 22 14-35 133-154 (349)
473 2px0_A Flagellar biosynthesis 94.6 0.021 7E-07 45.6 3.1 85 61-155 183-273 (296)
474 1sxj_C Activator 1 40 kDa subu 94.6 0.019 6.7E-07 46.4 3.0 23 14-36 48-70 (340)
475 3v9p_A DTMP kinase, thymidylat 94.6 0.018 6.2E-07 44.0 2.6 24 11-34 24-47 (227)
476 2ga8_A Hypothetical 39.9 kDa p 94.5 0.026 8.7E-07 46.1 3.6 23 12-34 24-46 (359)
477 1vma_A Cell division protein F 94.5 0.022 7.5E-07 45.6 3.1 85 62-156 188-284 (306)
478 2ocp_A DGK, deoxyguanosine kin 94.5 0.024 8.1E-07 43.5 3.2 23 13-35 3-25 (241)
479 3a8t_A Adenylate isopentenyltr 94.5 0.024 8.2E-07 46.0 3.2 23 13-35 41-63 (339)
480 3qf7_A RAD50; ABC-ATPase, ATPa 94.5 0.022 7.6E-07 46.7 3.1 19 15-33 26-44 (365)
481 3j16_B RLI1P; ribosome recycli 94.4 0.022 7.6E-07 50.0 3.2 23 15-37 381-403 (608)
482 3tqf_A HPR(Ser) kinase; transf 94.4 0.027 9.4E-07 41.2 3.1 35 149-183 128-162 (181)
483 3foz_A TRNA delta(2)-isopenten 94.4 0.03 1E-06 44.9 3.6 23 12-34 10-32 (316)
484 3exa_A TRNA delta(2)-isopenten 94.4 0.03 1E-06 44.9 3.6 23 13-35 4-26 (322)
485 2qgz_A Helicase loader, putati 94.4 0.027 9.1E-07 45.1 3.3 24 12-35 152-175 (308)
486 4b4t_K 26S protease regulatory 94.4 0.024 8.1E-07 47.6 3.1 24 12-35 206-229 (428)
487 3ld9_A DTMP kinase, thymidylat 94.4 0.029 9.9E-07 42.8 3.3 24 11-34 20-43 (223)
488 2h92_A Cytidylate kinase; ross 94.3 0.021 7.2E-07 42.9 2.5 22 13-34 4-25 (219)
489 4b4t_M 26S protease regulatory 94.3 0.025 8.7E-07 47.5 3.1 25 11-35 214-238 (434)
490 2r62_A Cell division protease 94.3 0.012 4E-07 45.9 1.0 22 14-35 46-67 (268)
491 1sxj_D Activator 1 41 kDa subu 94.3 0.025 8.7E-07 45.6 3.1 21 15-35 61-81 (353)
492 2v1u_A Cell division control p 94.2 0.023 7.8E-07 46.3 2.7 24 12-35 44-67 (387)
493 4b4t_L 26S protease subunit RP 94.2 0.027 9.4E-07 47.3 3.1 25 11-35 214-238 (437)
494 1wcv_1 SOJ, segregation protei 94.2 0.27 9.1E-06 37.9 8.6 67 61-130 112-182 (257)
495 3uk6_A RUVB-like 2; hexameric 94.1 0.026 8.8E-07 46.0 2.9 23 13-35 71-93 (368)
496 4edh_A DTMP kinase, thymidylat 94.1 0.03 1E-06 42.3 3.0 24 11-34 5-28 (213)
497 2bjv_A PSP operon transcriptio 94.1 0.029 1E-06 43.5 3.0 24 13-36 30-53 (265)
498 1a7j_A Phosphoribulokinase; tr 94.1 0.016 5.4E-07 46.1 1.4 23 12-34 5-27 (290)
499 3m6a_A ATP-dependent protease 94.1 0.028 9.4E-07 48.7 3.0 23 13-35 109-131 (543)
500 1qhl_A Protein (cell division 94.1 0.0044 1.5E-07 47.5 -1.8 23 15-37 30-52 (227)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.2e-43 Score=271.51 Aligned_cols=168 Identities=39% Similarity=0.647 Sum_probs=146.9
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
..+.+||+|+|++|||||||+++|..+.|...+.+|.+.++....+..++..+.+.||||+|+++|..++..+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
++|||++++.+|+.+..|+..+......++|++|||||+|+.+.+.++.++++.++..++++|+++||++|.||+++|+.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998887777999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027503 169 MINQIHQT 176 (222)
Q Consensus 169 l~~~i~~~ 176 (222)
|++.+...
T Consensus 170 i~~~i~~~ 177 (216)
T 4dkx_A 170 VAAALPGM 177 (216)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 99887644
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=5.4e-37 Score=235.75 Aligned_cols=176 Identities=48% Similarity=0.801 Sum_probs=162.0
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
++++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 57889999999999999999999999999988888999999988889999988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
+|+|||++++.++..+..|+..+......++|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887766799999999999988777888899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhh
Q 027503 168 QMINQIHQTTIQKSLC 183 (222)
Q Consensus 168 ~l~~~i~~~~~~~~~~ 183 (222)
+|++.+.+........
T Consensus 164 ~l~~~i~~~~~~~~~~ 179 (206)
T 2bcg_Y 164 TMARQIKESMSQQNLN 179 (206)
T ss_dssp HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999998776555443
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-37 Score=239.34 Aligned_cols=178 Identities=56% Similarity=0.878 Sum_probs=149.0
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
....++.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 7 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (223)
T 3cpj_B 7 GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA 86 (223)
T ss_dssp ---CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC
T ss_pred CCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC
Confidence 34557899999999999999999999999998888888888888888899999889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
|++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKA 166 (223)
T ss_dssp CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998876667999999999999877778888899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 027503 166 FLQMINQIHQTTIQKSLC 183 (222)
Q Consensus 166 ~~~l~~~i~~~~~~~~~~ 183 (222)
|++|++.+.+....+...
T Consensus 167 ~~~l~~~i~~~~~~~~~~ 184 (223)
T 3cpj_B 167 FEELINTIYQKVSKHQMD 184 (223)
T ss_dssp HHHHHHHHTTCC------
T ss_pred HHHHHHHHHHHhhhcccC
Confidence 999999998776655543
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=225.36 Aligned_cols=171 Identities=33% Similarity=0.520 Sum_probs=151.5
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+....++|+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 445689999999999999999999999988777777765544 4667788888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
+++|||++++.++..+..|+..+..... .++|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998877653 569999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 027503 167 LQMINQIHQTTIQ 179 (222)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (222)
++|++.+.+++..
T Consensus 169 ~~l~~~i~~~~~~ 181 (206)
T 2bov_A 169 FDLMREIRARKME 181 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccc
Confidence 9999999876543
No 5
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=3.1e-35 Score=225.72 Aligned_cols=174 Identities=34% Similarity=0.614 Sum_probs=152.9
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
...+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45688999999999999999999999999888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccccCCCH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSDLTHSREVNEEEGKILAE-TEGLYFMETSAMQNLNV 162 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi 162 (222)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+. .+.+..+.+..++. ..+++++++||++|.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988876543 458999999999997 45667778888887 67789999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 027503 163 EDAFLQMINQIHQTTIQKSL 182 (222)
Q Consensus 163 ~~~~~~l~~~i~~~~~~~~~ 182 (222)
+++|++|++.+.+.......
T Consensus 163 ~~l~~~l~~~~~~~~~~~~~ 182 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEVEL 182 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccc
Confidence 99999999999877655544
No 6
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.6e-35 Score=223.48 Aligned_cols=176 Identities=42% Similarity=0.725 Sum_probs=158.9
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (222)
....++++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus 18 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (201)
T 2ew1_A 18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR 97 (201)
T ss_dssp ----CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST
T ss_pred CCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh
Confidence 34566789999999999999999999999999988888899988988889999998899999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
.+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus 98 ~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 98 SANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999999988877779999999999998777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 027503 164 DAFLQMINQIHQTTIQ 179 (222)
Q Consensus 164 ~~~~~l~~~i~~~~~~ 179 (222)
++|+++++.+.+...+
T Consensus 178 ~l~~~l~~~i~~~~~~ 193 (201)
T 2ew1_A 178 KLFLDLACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998876543
No 7
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=218.16 Aligned_cols=175 Identities=49% Similarity=0.783 Sum_probs=160.7
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
..+.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34567899999999999999999999999999888889999999999999999989999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+.+..++...+++++++||++|.|++++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998887777999999999999888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 027503 166 FLQMINQIHQTTIQK 180 (222)
Q Consensus 166 ~~~l~~~i~~~~~~~ 180 (222)
|++|++.+.+.....
T Consensus 170 ~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 170 FMTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998765543
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=3.7e-34 Score=217.48 Aligned_cols=175 Identities=52% Similarity=0.808 Sum_probs=156.8
Q ss_pred CCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhh
Q 027503 3 DSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYY 82 (222)
Q Consensus 3 ~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 82 (222)
...+.+.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..++
T Consensus 12 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 91 (191)
T 2a5j_A 12 SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY 91 (191)
T ss_dssp CCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh
Confidence 45567778999999999999999999999999998888888888888888899999889999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
+.+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999999998876667999999999999876778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 027503 163 EDAFLQMINQIHQTT 177 (222)
Q Consensus 163 ~~~~~~l~~~i~~~~ 177 (222)
+++|++|++.+.++.
T Consensus 172 ~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 172 EEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 9
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=3.7e-34 Score=216.10 Aligned_cols=173 Identities=49% Similarity=0.773 Sum_probs=159.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+..++..++..+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 57889999999999999999999999999888888888888888888999988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
+|+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999988887767799999999999987677888889999999999999999999999999999
Q ss_pred HHHHHHHHhhhhh
Q 027503 168 QMINQIHQTTIQK 180 (222)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (222)
++++.+.+.....
T Consensus 166 ~l~~~~~~~~~~~ 178 (186)
T 2bme_A 166 QCARKILNKIESG 178 (186)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhhc
Confidence 9999988765443
No 10
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=9.4e-34 Score=217.05 Aligned_cols=172 Identities=41% Similarity=0.751 Sum_probs=158.5
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
+++++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||.+.+..++..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 46788999999999999999999999999988888888888888888888998899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+.+..++...+++++++||++|.|++++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988776679999999999998877888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027503 167 LQMINQIHQTTI 178 (222)
Q Consensus 167 ~~l~~~i~~~~~ 178 (222)
++|.+.+.+...
T Consensus 163 ~~l~~~i~~~~~ 174 (203)
T 1zbd_A 163 ERLVDVICEKMS 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999886543
No 11
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=9.3e-34 Score=214.83 Aligned_cols=173 Identities=41% Similarity=0.757 Sum_probs=158.7
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (222)
+.....++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++.
T Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence 45667788999999999999999999999999988888888888888888888888899999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
.+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK 173 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999999999999999988766679999999999998777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027503 164 DAFLQMINQIHQT 176 (222)
Q Consensus 164 ~~~~~l~~~i~~~ 176 (222)
++|++|++.+.+.
T Consensus 174 ~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 174 QVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 12
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.6e-34 Score=217.68 Aligned_cols=173 Identities=47% Similarity=0.817 Sum_probs=129.0
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
.++++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 35678999999999999999999999998887777788888888888888998899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988766679999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 027503 167 LQMINQIHQTTIQ 179 (222)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (222)
++|++.+.+....
T Consensus 163 ~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 163 FTLARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999998865443
No 13
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=218.82 Aligned_cols=172 Identities=45% Similarity=0.771 Sum_probs=148.0
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
++++++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 46678899999999999999999999999998877888888888888888999889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVED 164 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 164 (222)
|++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++..++...++ +++++||++|.|+++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999999887766799999999999987677888899999999999 999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027503 165 AFLQMINQIHQTT 177 (222)
Q Consensus 165 ~~~~l~~~i~~~~ 177 (222)
+|++|++.+.+..
T Consensus 183 l~~~l~~~i~~~~ 195 (201)
T 2hup_A 183 AFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887543
No 14
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.5e-34 Score=215.93 Aligned_cols=174 Identities=52% Similarity=0.896 Sum_probs=157.7
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (222)
...+++++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||.+.+..++..++.
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence 34566788999999999999999999999999988888888888888888889998999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
.+|++|+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999998887766679999999999998767778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027503 164 DAFLQMINQIHQTT 177 (222)
Q Consensus 164 ~~~~~l~~~i~~~~ 177 (222)
++|++|++.+.+..
T Consensus 177 ~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 177 LAFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=212.22 Aligned_cols=174 Identities=43% Similarity=0.720 Sum_probs=156.3
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
.+.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 46788999999999999999999999999988888899999999899999999899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
++|+|||++++.++..+..|+..+..... ++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999998877654 48999999999998877888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhh
Q 027503 167 LQMINQIHQTTIQKS 181 (222)
Q Consensus 167 ~~l~~~i~~~~~~~~ 181 (222)
++|.+.+.+.+..+.
T Consensus 163 ~~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 163 NCITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999887765543
No 16
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=9.3e-34 Score=214.85 Aligned_cols=178 Identities=37% Similarity=0.649 Sum_probs=155.7
Q ss_pred CCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeE-EEEEEECCe---------EEEEEEEeCCCh
Q 027503 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA-YRNIRVGDK---------LIKAQIWDTAGQ 71 (222)
Q Consensus 2 ~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~ 71 (222)
|.|+..++++.+||+|+|++|||||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+|||||+
T Consensus 1 ~~m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 80 (195)
T 3bc1_A 1 GSMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80 (195)
T ss_dssp -----CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS
T ss_pred CCCcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc
Confidence 4566778899999999999999999999999999888788888888777 666777665 689999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027503 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY 150 (222)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (222)
+.+..++..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++
T Consensus 81 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (195)
T 3bc1_A 81 ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP 160 (195)
T ss_dssp GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999998877664 56999999999999876778888899999999999
Q ss_pred EEEEccccCCCHHHHHHHHHHHHHHhhhh
Q 027503 151 FMETSAMQNLNVEDAFLQMINQIHQTTIQ 179 (222)
Q Consensus 151 ~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~ 179 (222)
++++||++|.|++++|++|.+.+.+....
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999998865443
No 17
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.5e-34 Score=218.78 Aligned_cols=176 Identities=48% Similarity=0.745 Sum_probs=147.5
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (222)
...+++++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 96 (200)
T 2o52_A 17 RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 96 (200)
T ss_dssp -----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence 34566788999999999999999999999999888888888888888888899998899999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
.+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus 97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 97 GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 176 (200)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999999888776679999999999998767788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 027503 164 DAFLQMINQIHQTTIQ 179 (222)
Q Consensus 164 ~~~~~l~~~i~~~~~~ 179 (222)
++|++|++.+.+....
T Consensus 177 ~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 177 EAFLKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998875543
No 18
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.4e-33 Score=211.23 Aligned_cols=170 Identities=52% Similarity=0.828 Sum_probs=155.1
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
..+.++.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+..++..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 34567899999999999999999999999998888888888888888888999889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998887677999999999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027503 166 FLQMINQIHQ 175 (222)
Q Consensus 166 ~~~l~~~i~~ 175 (222)
|+++++.+.+
T Consensus 169 ~~~l~~~i~~ 178 (179)
T 1z0f_A 169 FLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.7e-33 Score=210.32 Aligned_cols=171 Identities=40% Similarity=0.696 Sum_probs=153.8
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
.......+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 34567889999999999999999999999998888888888888888888998889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 86 AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEI 165 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999999999999998877667999999999999877788888999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027503 166 FLQMINQIHQT 176 (222)
Q Consensus 166 ~~~l~~~i~~~ 176 (222)
|++|++.+.+.
T Consensus 166 ~~~l~~~~~~~ 176 (181)
T 2efe_B 166 FYEIARRLPRV 176 (181)
T ss_dssp HHHHHHTCC--
T ss_pred HHHHHHHHHhc
Confidence 99998877543
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1e-33 Score=210.43 Aligned_cols=168 Identities=38% Similarity=0.699 Sum_probs=146.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
..++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 35688999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
+++|+|++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999999988776655699999999999987777888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027503 168 QMINQIHQ 175 (222)
Q Consensus 168 ~l~~~i~~ 175 (222)
+|++.+.+
T Consensus 162 ~l~~~~~~ 169 (170)
T 1z08_A 162 DLCKRMIE 169 (170)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988753
No 21
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.9e-33 Score=208.74 Aligned_cols=171 Identities=43% Similarity=0.719 Sum_probs=146.7
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG 84 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (222)
...++..++|+|+|++|||||||+++|.+..+. ..+.++.+.++....+..++..+.+.+|||||++.+..++..++..
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 345678999999999999999999999998875 4567888888888888889988999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
+|++|+|+|++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|+++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999999887767799999999999988777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027503 165 AFLQMINQIHQT 176 (222)
Q Consensus 165 ~~~~l~~~i~~~ 176 (222)
+|+++.+.+.+.
T Consensus 164 l~~~l~~~~~~~ 175 (180)
T 2g6b_A 164 AFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999988644
No 22
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=213.84 Aligned_cols=171 Identities=40% Similarity=0.769 Sum_probs=148.1
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503 5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG 84 (222)
Q Consensus 5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (222)
...+.++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.
T Consensus 19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (192)
T 2il1_A 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS 98 (192)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 34566789999999999999999999999998888888888888888889999988999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccccCCCHH
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-GLYFMETSAMQNLNVE 163 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 163 (222)
+|++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..++++.++... +++++++||++|.|++
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 999999999999999999999999988887777999999999999877778888888888874 7899999999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 164 DAFLQMINQIHQ 175 (222)
Q Consensus 164 ~~~~~l~~~i~~ 175 (222)
++|++|++.+.+
T Consensus 179 ~l~~~l~~~i~~ 190 (192)
T 2il1_A 179 EIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=6.6e-33 Score=205.91 Aligned_cols=166 Identities=40% Similarity=0.715 Sum_probs=153.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+.++.+||+|+|++|||||||+++|.+..+.....++.+.+.....+...+....+.+|||||.+.+..++..++..+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 34678999999999999999999999999888888888888888888999988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
+++|||++++.++..+..|+..+.......+|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999887767799999999999987777888889999999999999999999999999999
Q ss_pred HHHHHH
Q 027503 168 QMINQI 173 (222)
Q Consensus 168 ~l~~~i 173 (222)
+|.+.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998765
No 24
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-34 Score=218.43 Aligned_cols=172 Identities=40% Similarity=0.765 Sum_probs=158.5
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
..++++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 34567899999999999999999999999988888888888888888888888888999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999998877677999999999999887888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 027503 166 FLQMINQIHQTT 177 (222)
Q Consensus 166 ~~~l~~~i~~~~ 177 (222)
|++|++.+.+..
T Consensus 177 ~~~l~~~i~~~~ 188 (191)
T 3dz8_A 177 FERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 25
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.2e-33 Score=210.18 Aligned_cols=168 Identities=39% Similarity=0.657 Sum_probs=152.4
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
.+....++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..++..+|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 34456799999999999999999999999988888888888888888999998899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
++|+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887766679999999999998777788888899999999999999999999999999
Q ss_pred HHHHHHHH
Q 027503 167 LQMINQIH 174 (222)
Q Consensus 167 ~~l~~~i~ 174 (222)
++|.+.+.
T Consensus 169 ~~l~~~~~ 176 (179)
T 2y8e_A 169 RRVAAALP 176 (179)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHh
Confidence 99987654
No 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.3e-33 Score=207.53 Aligned_cols=166 Identities=45% Similarity=0.798 Sum_probs=145.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
+|+|++++.++..+..|+..+......++|+++|+||+|+. .+....+....++...+++++++||++|.|+.++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988776679999999999994 46677888899999999999999999999999999999
Q ss_pred HHHHHHh
Q 027503 170 INQIHQT 176 (222)
Q Consensus 170 ~~~i~~~ 176 (222)
.+.+.++
T Consensus 160 ~~~~~~~ 166 (170)
T 1g16_A 160 AKLIQEK 166 (170)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9988754
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=4.2e-33 Score=206.79 Aligned_cols=165 Identities=41% Similarity=0.715 Sum_probs=151.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
..+.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45789999999999999999999999998888888888888888889998889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
++|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876667999999999999876777888899999999999999999999999999999
Q ss_pred HHHHH
Q 027503 169 MINQI 173 (222)
Q Consensus 169 l~~~i 173 (222)
|++.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98765
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-33 Score=213.49 Aligned_cols=171 Identities=39% Similarity=0.675 Sum_probs=152.9
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (222)
.-.+.+++.+||+|+|++|||||||+++|.+..+.....++.+.+.....+..++....+.+|||||++.+..++..+++
T Consensus 15 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (192)
T 2fg5_A 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR 94 (192)
T ss_dssp ------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred ccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc
Confidence 33566788999999999999999999999999987778888888888888888888889999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
.+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 99999999999999999999999999988776679999999999998767788889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027503 164 DAFLQMINQIH 174 (222)
Q Consensus 164 ~~~~~l~~~i~ 174 (222)
++|++|.+.+.
T Consensus 175 ~l~~~l~~~i~ 185 (192)
T 2fg5_A 175 ELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHH
Confidence 99999988664
No 29
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.8e-32 Score=207.06 Aligned_cols=172 Identities=31% Similarity=0.482 Sum_probs=148.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|++|||||||+++|.+..+...+.++. .+.....+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999998877776666 4555577788898889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+ .....+....++...+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999887754 45699999999999974 666788899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhh
Q 027503 169 MINQIHQTTIQKSLC 183 (222)
Q Consensus 169 l~~~i~~~~~~~~~~ 183 (222)
|++.+.+........
T Consensus 160 l~~~~~~~~~~~~~~ 174 (189)
T 4dsu_A 160 LVREIRKHKEKMSKD 174 (189)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhcccc
Confidence 999998776555443
No 30
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.3e-32 Score=207.15 Aligned_cols=168 Identities=33% Similarity=0.534 Sum_probs=152.1
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
....+.+||+|+|++|||||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3456789999999999999999999999988888888877666 677888998899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccc-cCCCHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAM-QNLNVED 164 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~ 164 (222)
++++|||++++.+++.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++...+++++++||+ +|.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 999999999999999999999888664 34668999999999998888899999999999999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 027503 165 AFLQMINQIHQ 175 (222)
Q Consensus 165 ~~~~l~~~i~~ 175 (222)
+|++|++.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=4.5e-33 Score=206.39 Aligned_cols=166 Identities=38% Similarity=0.607 Sum_probs=151.2
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35789999999999999999999999998888888888888888899999889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999998887765 45899999999999876777888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 027503 169 MINQIHQ 175 (222)
Q Consensus 169 l~~~i~~ 175 (222)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 32
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=8.4e-33 Score=205.18 Aligned_cols=163 Identities=44% Similarity=0.754 Sum_probs=149.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888888888888888888899988999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC---CCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS---REVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
|+|++++.++..+..|+..+......++|+++|+||+|+.+. +.+..++...++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988877667999999999999764 66778888999999999999999999999999999
Q ss_pred HHHHHH
Q 027503 168 QMINQI 173 (222)
Q Consensus 168 ~l~~~i 173 (222)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 33
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=205.42 Aligned_cols=169 Identities=31% Similarity=0.406 Sum_probs=138.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--hhhhhHhhhcCCcE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--FRAITSSYYRGALG 87 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~ 87 (222)
++.+||+|+|++|||||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+|||||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 46799999999999999999999998876554 4566677777888899889999999999887 56777889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988887653 3468999999999998877888888889999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 027503 167 LQMINQIHQTTIQ 179 (222)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (222)
++|++.+.+.+..
T Consensus 161 ~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 161 EGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcc
Confidence 9999988765443
No 34
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.3e-32 Score=206.23 Aligned_cols=170 Identities=32% Similarity=0.476 Sum_probs=151.6
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
.+.+..++|+|+|++|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..++..+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 45567899999999999999999999999887777777766655 67788888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHH-HcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELRE-FCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
++++|||++++.++..+..|+..+.. ....++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 99999999999999999999988744 44566999999999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 027503 166 FLQMINQIHQTT 177 (222)
Q Consensus 166 ~~~l~~~i~~~~ 177 (222)
|++|.+.+.+..
T Consensus 163 ~~~l~~~~~~~~ 174 (181)
T 2fn4_A 163 FEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 35
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-32 Score=211.68 Aligned_cols=171 Identities=43% Similarity=0.765 Sum_probs=152.5
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
...+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++..+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34567899999999999999999999999988888888888888888999998899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
++|+|||++++.++..+..|+..+......++|+++|+||+|+ ..+.+..+....++...+++++++||++|.|++++|
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999988877667999999999999 446677888889999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027503 167 LQMINQIHQTTI 178 (222)
Q Consensus 167 ~~l~~~i~~~~~ 178 (222)
++|.+.+.+...
T Consensus 174 ~~l~~~~~~~~~ 185 (213)
T 3cph_A 174 FTLAKLIQEKID 185 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998876543
No 36
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1e-32 Score=207.38 Aligned_cols=168 Identities=33% Similarity=0.434 Sum_probs=150.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
....++|+|+|++|||||||+++|.++.+...+.++.+... ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34689999999999999999999999888888878877666 67788899889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999998886654 35699999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 027503 168 QMINQIHQTT 177 (222)
Q Consensus 168 ~l~~~i~~~~ 177 (222)
++++.+.+..
T Consensus 162 ~l~~~~~~~~ 171 (181)
T 3t5g_A 162 RIILEAEKMD 171 (181)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 37
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-33 Score=212.72 Aligned_cols=166 Identities=29% Similarity=0.419 Sum_probs=143.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
....++|+|+|++|||||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+..++..++..+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 35679999999999999999999999888777777765443 35567788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ +.+..+++..++...+++++++||++|.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999998888887776543 3589999999999975 5667788888999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027503 167 LQMINQIHQT 176 (222)
Q Consensus 167 ~~l~~~i~~~ 176 (222)
++|++.+.++
T Consensus 163 ~~l~~~~~~~ 172 (199)
T 2gf0_A 163 QELLTLETRR 172 (199)
T ss_dssp HHHHHHCSSS
T ss_pred HHHHHHHhhh
Confidence 9998876543
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=3.2e-32 Score=203.70 Aligned_cols=167 Identities=34% Similarity=0.656 Sum_probs=147.9
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+.+..++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45688999999999999999999999999888888888888888889999988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccccCCCH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSDLTHSREVNEEEGKILAE-TEGLYFMETSAMQNLNV 162 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi 162 (222)
+++|||++++.++..+..|+..+..... .++|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999998876653 568999999999997 46677888888888 56789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027503 163 EDAFLQMINQIHQ 175 (222)
Q Consensus 163 ~~~~~~l~~~i~~ 175 (222)
+++|+++++.+.+
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 39
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=9.3e-33 Score=210.77 Aligned_cols=170 Identities=30% Similarity=0.371 Sum_probs=146.0
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-hhHhhhcCCc
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-ITSSYYRGAL 86 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d 86 (222)
+.+..+||+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..++..+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 456789999999999999999999976554434456666777777888899999999999999987764 7888899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999998877653 46999999999999877788888999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 027503 166 FLQMINQIHQTT 177 (222)
Q Consensus 166 ~~~l~~~i~~~~ 177 (222)
|+++++.+.+.+
T Consensus 179 f~~l~~~i~~~~ 190 (195)
T 3cbq_A 179 FEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999886543
No 40
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.3e-32 Score=204.45 Aligned_cols=165 Identities=30% Similarity=0.366 Sum_probs=135.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-hhHhhhcCCcEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-ITSSYYRGALGALL 90 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i~ 90 (222)
.+||+|+|++|||||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777766667777788888888999999999999999998775 77788999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877654 469999999999998778889999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 027503 170 INQIHQT 176 (222)
Q Consensus 170 ~~~i~~~ 176 (222)
++.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.8e-33 Score=209.69 Aligned_cols=168 Identities=33% Similarity=0.472 Sum_probs=148.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-KLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
..+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+|||||++.+..++..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999999888766678888888888888876 67899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
+|+|||++++.+++.+..|+..+..... ...|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999988876532 3244889999999987677888889999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027503 165 AFLQMINQIHQT 176 (222)
Q Consensus 165 ~~~~l~~~i~~~ 176 (222)
+|++|++.+.+.
T Consensus 163 l~~~l~~~~~~~ 174 (178)
T 2hxs_A 163 CFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999887644
No 42
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.9e-32 Score=207.65 Aligned_cols=168 Identities=36% Similarity=0.625 Sum_probs=148.7
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-hhhHhhhcCC
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR-AITSSYYRGA 85 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~ 85 (222)
......+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+. .++..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 344578999999999999999999999999888888888888888889999988999999999999988 8899999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC---CC
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN---LN 161 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~g 161 (222)
|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++| .|
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence 99999999999999999999999987775 566999999999999877778888999999999999999999999 99
Q ss_pred HHHHHHHHHHHHH
Q 027503 162 VEDAFLQMINQIH 174 (222)
Q Consensus 162 i~~~~~~l~~~i~ 174 (222)
+.++|++|++.+.
T Consensus 175 i~~l~~~l~~~i~ 187 (189)
T 1z06_A 175 VEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 43
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=5.4e-33 Score=215.03 Aligned_cols=174 Identities=37% Similarity=0.680 Sum_probs=151.6
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe----------EEEEEEEeCCChhhhh
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK----------LIKAQIWDTAGQERFR 75 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~ 75 (222)
..++++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++. .+.+.||||||++.+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 456788999999999999999999999998887666777777777777777665 6889999999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027503 76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMET 154 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (222)
.++..++..+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+.+.+.+..+++..++...+++++++
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence 9999999999999999999999999999989887755443 569999999999998777788889999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHhhhh
Q 027503 155 SAMQNLNVEDAFLQMINQIHQTTIQ 179 (222)
Q Consensus 155 Sa~~~~gi~~~~~~l~~~i~~~~~~ 179 (222)
||++|.|++++|++|++.+.+....
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998875443
No 44
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.9e-33 Score=211.85 Aligned_cols=168 Identities=39% Similarity=0.658 Sum_probs=140.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 44678999999999999999999999999877778888888888888999998999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC------CCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT------HSREVNEEEGKILAETEGLYFMETSAMQNLN 161 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (222)
+|+|||++++.++..+..|+..+......++|++||+||+|+. ..+.+..+++..++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999999888766679999999999996 3466778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027503 162 VEDAFLQMINQIHQ 175 (222)
Q Consensus 162 i~~~~~~l~~~i~~ 175 (222)
++++|++|++.+.+
T Consensus 184 v~el~~~l~~~i~~ 197 (199)
T 2p5s_A 184 IVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=8.1e-32 Score=203.69 Aligned_cols=165 Identities=19% Similarity=0.297 Sum_probs=143.5
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
.......+||+|+|++|||||||+++|.+..+...+.++. ..+...+.+++..+.+.+|||+|++.+. ++..+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 4456789999999999999999999999999887776663 3344788899999999999999998766 78889
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHcC-CeEEEEccccCCC
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLT--HSREVNEEEGKILAETEG-LYFMETSAMQNLN 161 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 161 (222)
|++++|||++++.+++.+..|+..+..... .++|++||+||+|+. ..+.+..+++..++...+ ++|+++||++|.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999999999877653 468999999999994 456788899999999987 8999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027503 162 VEDAFLQMINQIHQTT 177 (222)
Q Consensus 162 i~~~~~~l~~~i~~~~ 177 (222)
++++|+++++.+.+.+
T Consensus 167 v~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 167 VERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988664
No 46
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.3e-31 Score=204.52 Aligned_cols=165 Identities=35% Similarity=0.611 Sum_probs=147.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeE----------------------------
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKL---------------------------- 60 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 60 (222)
.++.+||+|+|++|||||||+++|++..+...+.++.+.+.....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 4578999999999999999999999999888888888888887777777655
Q ss_pred ---------EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 61 ---------IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 61 ---------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
..+.+|||||++.+..++..+++.+|++|+|||++++.++..+..|+..+..... .|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence 7899999999999999999999999999999999999999999999988877654 89999999999 55
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 176 (222)
.+.+..+++..++...+++++++||++|.|+.++|++|.+.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 567788899999999999999999999999999999999988754
No 47
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=6.1e-32 Score=205.64 Aligned_cols=168 Identities=28% Similarity=0.517 Sum_probs=147.9
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+....+||+|+|++|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 4567899999999999999999999999987777788766655 467788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC--CCCCHHHHHHHHHHcCCe-EEEEccccCCCHH
Q 027503 88 ALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS--REVNEEEGKILAETEGLY-FMETSAMQNLNVE 163 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 163 (222)
+|+|||++++.+++.+ ..|+..+..... ++|+++|+||+|+.+. +.+..+++..++...++. ++++||++|.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 678888876643 4999999999999753 667889999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027503 164 DAFLQMINQIHQTT 177 (222)
Q Consensus 164 ~~~~~l~~~i~~~~ 177 (222)
++|+++++.+.+..
T Consensus 177 ~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 177 EVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887543
No 48
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=206.87 Aligned_cols=165 Identities=24% Similarity=0.398 Sum_probs=142.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..+ ..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 35789999999999999999999999998877778876655 456778888899999999999988775 6799999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc-ccCCCHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFC---SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA-MQNLNVED 164 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~ 164 (222)
|+|||++++.+++.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++...+++++++|| ++|.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 99999999999999999999887664 246999999999999877788889999999999999999999 89999999
Q ss_pred HHHHHHHHHHH
Q 027503 165 AFLQMINQIHQ 175 (222)
Q Consensus 165 ~~~~l~~~i~~ 175 (222)
+|++|++.+.+
T Consensus 176 lf~~l~~~i~~ 186 (187)
T 3c5c_A 176 VFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999988753
No 49
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=7.3e-33 Score=212.38 Aligned_cols=172 Identities=28% Similarity=0.448 Sum_probs=116.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCCCCCCcceeeEEEEEEECCe--EEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD--EFRLDSKPTIGVEFAYRNIRVGDK--LIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
...++|+|+|++|||||||+++|.+. .+...+.++.+.+.....+.+++. .+.+.+|||||++.+..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999998 777677788877777788888876 78999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHHHcCCeEEEEcccc-CC
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTH-SREVNEEEGKILAETEGLYFMETSAMQ-NL 160 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 160 (222)
|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+.+ .+.+..+++..++...+++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 5799999999999987 677888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHhhhhhh
Q 027503 161 NVEDAFLQMINQIHQTTIQKS 181 (222)
Q Consensus 161 gi~~~~~~l~~~i~~~~~~~~ 181 (222)
|++++|++|++.+.+....+.
T Consensus 178 gi~~l~~~i~~~~~~~~~~~~ 198 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDKV 198 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999887665443
No 50
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-32 Score=204.48 Aligned_cols=169 Identities=46% Similarity=0.742 Sum_probs=152.7
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+....++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 44578999999999999999999999999888888888888888889999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
+|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+ +.+..+++..++...+++++++||++|.|++++|
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 999999999999999999988887654 35689999999999953 5677888899999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 027503 167 LQMINQIHQTT 177 (222)
Q Consensus 167 ~~l~~~i~~~~ 177 (222)
++|++.+.+..
T Consensus 170 ~~l~~~~~~~~ 180 (195)
T 1x3s_A 170 EELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHTSG
T ss_pred HHHHHHHHhhh
Confidence 99999987543
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.3e-32 Score=199.58 Aligned_cols=164 Identities=34% Similarity=0.538 Sum_probs=143.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..+||+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999988777767665544 4566788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988877654 469999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHH
Q 027503 170 INQIHQ 175 (222)
Q Consensus 170 ~~~i~~ 175 (222)
++.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=9.8e-32 Score=202.52 Aligned_cols=170 Identities=34% Similarity=0.520 Sum_probs=148.9
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+....+||+|+|++|||||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345679999999999999999999999888777767665444 4567788888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
+++|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999988877654 469999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027503 167 LQMINQIHQTTI 178 (222)
Q Consensus 167 ~~l~~~i~~~~~ 178 (222)
++|++.+.+++.
T Consensus 173 ~~l~~~i~~~~~ 184 (187)
T 2a9k_A 173 FDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999876543
No 53
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=210.30 Aligned_cols=170 Identities=32% Similarity=0.487 Sum_probs=144.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
....+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 35689999999999999999999999998888777776665 56666677778999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 167 (222)
|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998887653 34689999999999988788889999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 027503 168 QMINQIHQTTIQ 179 (222)
Q Consensus 168 ~l~~~i~~~~~~ 179 (222)
+|++.+.+....
T Consensus 180 ~l~~~i~~~~~~ 191 (201)
T 3oes_A 180 KVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHhhhhh
Confidence 999998765433
No 54
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-32 Score=212.00 Aligned_cols=170 Identities=33% Similarity=0.564 Sum_probs=143.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
.+.+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999988777777776554 456677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--------CCHHHHHHHHHHcCC-eEEEEccccC
Q 027503 90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSRE--------VNEEEGKILAETEGL-YFMETSAMQN 159 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 159 (222)
+|||++++.+++.+. .|+..+..... ++|++||+||+|+.+.+. +..+++..++...++ +|+++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999986 79988877654 599999999999876443 367888889998886 9999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhhh
Q 027503 160 LNVEDAFLQMINQIHQTTIQKS 181 (222)
Q Consensus 160 ~gi~~~~~~l~~~i~~~~~~~~ 181 (222)
.|++++|++|++.+.+....+.
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~~~ 186 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRRKE 186 (212)
T ss_dssp TTHHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHHHhhhhhhcc
Confidence 9999999999999987655444
No 55
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=7.8e-32 Score=199.59 Aligned_cols=163 Identities=30% Similarity=0.397 Sum_probs=123.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEE
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLV 91 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (222)
.+||+|+|++|||||||+++|.+..+... .++.+.+. ...+.+++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999987765433 34444444 45678889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHH
Q 027503 92 YDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887653 45699999999999988888899999999999999999999999999999999999
Q ss_pred HHHHHh
Q 027503 171 NQIHQT 176 (222)
Q Consensus 171 ~~i~~~ 176 (222)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988765
No 56
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.9e-31 Score=199.94 Aligned_cols=165 Identities=19% Similarity=0.319 Sum_probs=140.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|++|||||||+++|.+..+.. +.++.+.. ....+.+++..+.+.+|||||++. ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999998876 66776544 457778888889999999999875 46788999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLT--HSREVNEEEGKILAETE-GLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 163 (222)
+|||++++.+++.+..|+..+..... .++|+++|+||+|+. ..+.+..+++..++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 99999999999999998777665533 568999999999994 45677888888888876 6899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 027503 164 DAFLQMINQIHQTTIQKS 181 (222)
Q Consensus 164 ~~~~~l~~~i~~~~~~~~ 181 (222)
++|+++++.+.+.+....
T Consensus 158 ~lf~~l~~~~~~~~~~~~ 175 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQQQ 175 (178)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999987765543
No 57
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=3.6e-32 Score=210.41 Aligned_cols=169 Identities=24% Similarity=0.444 Sum_probs=145.5
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
.....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 445789999999999999999999999998888888887665 4566777888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHH-HHHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEE
Q 027503 88 ALLVYDITRRATFEN-TKKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFME 153 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~ 153 (222)
+|+|||++++.++.. +..|+..+..... ++|++||+||+|+.+. +.+..+++..++...++ +|++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 6889999887753 5999999999999753 67888999999999999 9999
Q ss_pred EccccCCC-HHHHHHHHHHHHHHhhh
Q 027503 154 TSAMQNLN-VEDAFLQMINQIHQTTI 178 (222)
Q Consensus 154 ~Sa~~~~g-i~~~~~~l~~~i~~~~~ 178 (222)
+||++|.| ++++|+++++.+.+...
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred eccCCCcccHHHHHHHHHHHHhccCc
Confidence 99999998 99999999998876543
No 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=7.4e-32 Score=199.64 Aligned_cols=163 Identities=33% Similarity=0.518 Sum_probs=144.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..+||+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+..++..++..+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999988777777776554 3566778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccccCCCHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-GLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++... +++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999998887654 456999999999999877778888889998887 799999999999999999999
Q ss_pred HHHHHH
Q 027503 169 MINQIH 174 (222)
Q Consensus 169 l~~~i~ 174 (222)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998763
No 59
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=5.1e-32 Score=203.25 Aligned_cols=170 Identities=35% Similarity=0.630 Sum_probs=135.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
+....++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.++ +....+.+||+||++.+..++..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45678999999999999999999999999888888888888888887776 55678999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcC----CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEccccCC
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCS----SCMAIVLVGNKSDLTH-SREVNEEEGKILAE-TEGLYFMETSAMQNL 160 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 160 (222)
++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ .+.+..+++..++. ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999988876653 5689999999999954 34567788888887 567899999999999
Q ss_pred CHHHHHHHHHHHHHHhh
Q 027503 161 NVEDAFLQMINQIHQTT 177 (222)
Q Consensus 161 gi~~~~~~l~~~i~~~~ 177 (222)
|++++|++|.+.+.+.+
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQN 180 (182)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999887653
No 60
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-31 Score=203.20 Aligned_cols=169 Identities=29% Similarity=0.489 Sum_probs=147.5
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR 83 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (222)
|...+..+.++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 88 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 88 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence 4444556889999999999999999999999988777777776554 456777888889999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-
Q 027503 84 GALGALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL- 149 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~- 149 (222)
.+|++|+|||++++.++..+. .|+..+..... ++|+++|+||+|+.+. +.+..+++..++...++
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 999999999999999999987 79888887654 5899999999999763 46778889999999997
Q ss_pred eEEEEccccCCCHHHHHHHHHHHHH
Q 027503 150 YFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 150 ~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
+++++||++|.|++++|++|++.+.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998875
No 61
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=9.8e-32 Score=198.69 Aligned_cols=164 Identities=34% Similarity=0.518 Sum_probs=145.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..++|+|+|++|||||||+++|.++.+...+.++.+. .....+.+++....+.+|||||++.+..++..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4689999999999999999999998887777676653 346677888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999988887664 3569999999999998777788888899999999999999999999999999999
Q ss_pred HHHHHH
Q 027503 170 INQIHQ 175 (222)
Q Consensus 170 ~~~i~~ 175 (222)
++.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988753
No 62
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-31 Score=206.59 Aligned_cols=169 Identities=29% Similarity=0.361 Sum_probs=140.5
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhhhcCC
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-FRAITSSYYRGA 85 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~ 85 (222)
..++.+||+|+|++|||||||+++|.+.... ....++.+.+.....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 4567899999999999999999999864431 22234566677777888899989999999999876 556777888999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++...+++|+++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988776543 34699999999999987677888888888999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027503 165 AFLQMINQIHQT 176 (222)
Q Consensus 165 ~~~~l~~~i~~~ 176 (222)
+|++|++.+...
T Consensus 193 lf~~l~~~i~~~ 204 (211)
T 2g3y_A 193 LFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987543
No 63
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=203.91 Aligned_cols=170 Identities=30% Similarity=0.464 Sum_probs=139.0
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
......++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++.++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3456789999999999999999999999888777777775444 466778888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEE
Q 027503 87 GALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTH------------SREVNEEEGKILAETEGL-YFM 152 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~ 152 (222)
++|+|||++++.++..+. .|+..+..... ++|++||+||+|+.+ .+.+..+++..++...++ +|+
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999986 69888877654 599999999999975 256778888999998887 899
Q ss_pred EEccccCCCHHHHHHHHHHHHHHhhh
Q 027503 153 ETSAMQNLNVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 153 ~~Sa~~~~gi~~~~~~l~~~i~~~~~ 178 (222)
++||++|.|++++|++|++.+.+...
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999999876543
No 64
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-31 Score=203.17 Aligned_cols=166 Identities=33% Similarity=0.500 Sum_probs=147.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ..++..++..+|++|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4679999999999999999999999998877777776554 45677888889999999999888 778889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC-CHHHHHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL-NVEDAFL 167 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~ 167 (222)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 9999999999999999998887764 3569999999999998777788899999999999999999999999 9999999
Q ss_pred HHHHHHHHhh
Q 027503 168 QMINQIHQTT 177 (222)
Q Consensus 168 ~l~~~i~~~~ 177 (222)
+|++.+.+.+
T Consensus 184 ~l~~~i~~~~ 193 (196)
T 2atv_A 184 ELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.4e-31 Score=202.01 Aligned_cols=166 Identities=30% Similarity=0.517 Sum_probs=143.3
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
..++.+||+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 356789999999999999999999999988877778776555 3566778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEE
Q 027503 88 ALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFME 153 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~ 153 (222)
+|+|||++++.+++.+ ..|+..+..... ++|+++|+||+|+.+. +.++.+++..++...+ ++|++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999998 679888877653 5899999999999742 5677888999998887 79999
Q ss_pred Eccc-cCCCHHHHHHHHHHHHHH
Q 027503 154 TSAM-QNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 154 ~Sa~-~~~gi~~~~~~l~~~i~~ 175 (222)
+||+ ++.|++++|+.+++.+.+
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9998 689999999999988763
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.1e-30 Score=197.94 Aligned_cols=170 Identities=31% Similarity=0.484 Sum_probs=136.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
+....++|+|+|.+|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 34578999999999999999999999988777666666443 34667788888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHH
Q 027503 88 ALLVYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
+++|||++++.++..+..|+..+..... .++|+++|+||+|+.+ +....++...++...+++++++||++|.|++++|
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988877653 4689999999999976 5667888899999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 027503 167 LQMINQIHQTTIQ 179 (222)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (222)
++|++.+.+.+.+
T Consensus 175 ~~l~~~~~~~~~~ 187 (190)
T 3con_A 175 YTLVREIRQYRMK 187 (190)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999998765543
No 67
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=3.1e-31 Score=199.72 Aligned_cols=165 Identities=30% Similarity=0.519 Sum_probs=144.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...++|+|+|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+..++..++..+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999888777777765444 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 027503 90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETS 155 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 155 (222)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..+++..++...++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 68888877654 5899999999998653 45677888899999997 999999
Q ss_pred cccCCCHHHHHHHHHHHHHHh
Q 027503 156 AMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 156 a~~~~gi~~~~~~l~~~i~~~ 176 (222)
|++|.|++++|+++++.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999887643
No 68
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=205.70 Aligned_cols=166 Identities=31% Similarity=0.520 Sum_probs=124.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|++|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..++..+|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 467999999999999999999999988877776766443 3566788888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEc
Q 027503 90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETEGL-YFMETS 155 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 155 (222)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.. .+..+++..++...++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 6888887765 348999999999997642 5677888899999997 999999
Q ss_pred cccCCCHHHHHHHHHHHHHHhh
Q 027503 156 AMQNLNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 156 a~~~~gi~~~~~~l~~~i~~~~ 177 (222)
|++|.|++++|++|++.+.+.+
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999987654
No 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=9.1e-32 Score=208.25 Aligned_cols=172 Identities=27% Similarity=0.456 Sum_probs=146.3
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERFRAITSSYYRG 84 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (222)
....+..+||+|+|.+|||||||+++|.+..+...+.++.+.......+... +..+.+.+|||||++.+..++..++..
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG 84 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence 3456788999999999999999999999988877777777777666665554 444789999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+....++...+++++++||++|.|+++
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL 164 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence 99999999999999999999999999888777799999999999988778888888999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027503 165 AFLQMINQIHQTT 177 (222)
Q Consensus 165 ~~~~l~~~i~~~~ 177 (222)
+|++|.+.+.+..
T Consensus 165 l~~~l~~~~~~~~ 177 (218)
T 4djt_A 165 PFLHLARIFTGRP 177 (218)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHhccc
Confidence 9999999887553
No 70
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.98 E-value=3.8e-34 Score=218.84 Aligned_cols=170 Identities=51% Similarity=0.819 Sum_probs=144.0
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
..+.++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 34567899999999999999999999999888777778888888888999999989999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
|++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999998776667999999999999877777777788899999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027503 166 FLQMINQIHQ 175 (222)
Q Consensus 166 ~~~l~~~i~~ 175 (222)
|++|++.+.+
T Consensus 187 ~~~l~~~l~~ 196 (199)
T 3l0i_B 187 FMTMAAEIKK 196 (199)
T ss_dssp HHHHTTTTTT
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 71
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.98 E-value=1.2e-30 Score=199.72 Aligned_cols=166 Identities=32% Similarity=0.507 Sum_probs=145.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
..+..+||+|+|.+|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 3467899999999999999999999999988877788776665 447788888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEE
Q 027503 88 ALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFME 153 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~ 153 (222)
+|+|||++++.++..+ ..|+..+..... ++|+++|+||+|+.+. +.+..+++..++...+. ++++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 9999999999999998 578888877643 5899999999999764 45777888899999887 8999
Q ss_pred EccccCCCHHHHHHHHHHHHHH
Q 027503 154 TSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
+||++|.|++++|++|++.+.+
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988753
No 72
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.98 E-value=2.9e-31 Score=204.06 Aligned_cols=166 Identities=30% Similarity=0.517 Sum_probs=143.6
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALG 87 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (222)
..++.+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 456789999999999999999999999998877778776655 4566778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEE
Q 027503 88 ALLVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEG-LYFME 153 (222)
Q Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~ 153 (222)
+|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..+++..++...+ ++|++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 181 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999998 679888877653 5899999999999642 4577888899998887 69999
Q ss_pred Eccc-cCCCHHHHHHHHHHHHHH
Q 027503 154 TSAM-QNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 154 ~Sa~-~~~gi~~~~~~l~~~i~~ 175 (222)
+||+ ++.|++++|+.+++.+++
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHhh
Confidence 9999 689999999999998764
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=2.8e-30 Score=190.51 Aligned_cols=163 Identities=33% Similarity=0.520 Sum_probs=143.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..++|+++|++|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||++.+..++..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 35899999999999999999999988877666666443 35667788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCS-SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
|||++++.++..+..|+..+..... .++|+++|+||+|+.+ +....+....++...+++++++||++|.|++++|+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988877653 4699999999999976 5667888899999999999999999999999999999
Q ss_pred HHHHHH
Q 027503 170 INQIHQ 175 (222)
Q Consensus 170 ~~~i~~ 175 (222)
++.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=4.8e-32 Score=205.99 Aligned_cols=175 Identities=20% Similarity=0.220 Sum_probs=138.8
Q ss_pred CCCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-----------CCCcceeeEEEEE-EECCeEEEEEEEeC
Q 027503 1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-----------KPTIGVEFAYRNI-RVGDKLIKAQIWDT 68 (222)
Q Consensus 1 ~~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt 68 (222)
|..+.....++.+||+|+|++|||||||++.+.+. +...+ .++.+.++....+ ..++..+.+.+|||
T Consensus 3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred ccccchhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeC
Confidence 33445567789999999999999999999766653 33332 2344444443334 55677889999999
Q ss_pred CChhhhhhhhHhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHH
Q 027503 69 AGQERFRAITSSYYRGALGALLVYDIT------RRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI 142 (222)
Q Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 142 (222)
||++.+..++..+++.+|++|+|||++ +..++..+..|+..+. ....++|+++|+||+|+.+. +..+++..
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~ 158 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRA 158 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHH
Confidence 999999999999999999999999999 4567777777777663 23356999999999999653 67888999
Q ss_pred HHHHcCC-eEEEEccccCCCHHHHHHHHHHHHHHhhhh
Q 027503 143 LAETEGL-YFMETSAMQNLNVEDAFLQMINQIHQTTIQ 179 (222)
Q Consensus 143 ~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~ 179 (222)
++...++ +++++||++|.|++++|++|++.+.+...+
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 159 VVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp HHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 9999998 999999999999999999999999876543
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=6.7e-31 Score=195.24 Aligned_cols=163 Identities=34% Similarity=0.467 Sum_probs=142.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..++|+|+|++|||||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+..++..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999888766667765444 3456678888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 91 VYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999889888876542 45899999999999877778888888999999999999999999999999999
Q ss_pred HHHHHH
Q 027503 169 MINQIH 174 (222)
Q Consensus 169 l~~~i~ 174 (222)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987553
No 76
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=1.3e-31 Score=208.02 Aligned_cols=173 Identities=31% Similarity=0.551 Sum_probs=152.0
Q ss_pred CCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhh
Q 027503 2 GDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSY 81 (222)
Q Consensus 2 ~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 81 (222)
..+......+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+..++..+.+.+|||||++.+..++..+
T Consensus 5 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 84 (221)
T 3gj0_A 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84 (221)
T ss_dssp -CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHH
T ss_pred ccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHH
Confidence 44556677889999999999999999999988777777777888889988889999999999999999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503 82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN 161 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (222)
++.+|++|+|||++++.++..+..|+..+..... ++|+++|+||+|+.+... . .....++...+++++++||++|.|
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBT
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999999999999999887754 489999999999976433 2 255677888899999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027503 162 VEDAFLQMINQIHQTT 177 (222)
Q Consensus 162 i~~~~~~l~~~i~~~~ 177 (222)
+.++|++|.+.+....
T Consensus 162 i~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 162 FEKPFLWLARKLIGDP 177 (221)
T ss_dssp TTHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999887553
No 77
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=5.5e-30 Score=195.78 Aligned_cols=169 Identities=61% Similarity=0.978 Sum_probs=151.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
+++.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..++..++++
T Consensus 2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 46789999999999999999999999998888888888888888899999989999999999999998999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQ 168 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 168 (222)
++|+|+.+..+++.+..|+..+......+.|+++|+||+|+.+.+....++++.++...++.++++|++++.|+.++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999888988887665556899999999999876777788899999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 027503 169 MINQIHQTT 177 (222)
Q Consensus 169 l~~~i~~~~ 177 (222)
+.+.+.+..
T Consensus 162 l~~~~~~~~ 170 (199)
T 2f9l_A 162 ILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 78
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=2.6e-30 Score=196.77 Aligned_cols=167 Identities=30% Similarity=0.391 Sum_probs=138.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc--CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhhhcCCc
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDE--FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-FRAITSSYYRGAL 86 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d 86 (222)
++.+||+|+|++|||||||+++|.+.. +... .++.+.+.....+.+++..+.+.+|||+|.+. +..++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 467999999999999999999999643 2322 34466677777788899989999999999876 4567788889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
++++|||+++..+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++|+++||++|.|+.++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988887653 356899999999999766777788888888889999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 027503 166 FLQMINQIHQTT 177 (222)
Q Consensus 166 ~~~l~~~i~~~~ 177 (222)
|+++++.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886554
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-30 Score=199.77 Aligned_cols=165 Identities=30% Similarity=0.506 Sum_probs=138.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
+..+||+|+|.+|||||||+++|.+..+...+.++.+.... ..+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 56889999999999999999999999988777777766554 34778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 027503 90 LVYDITRRATFENT-KKWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETS 155 (222)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 155 (222)
+|||++++.++..+ ..|+..+..... ++|+++|+||+|+.+. +.+..+++..++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 678888877543 4899999999999754 45677888889988887 899999
Q ss_pred cccCCCHHHHHHHHHHHHHHh
Q 027503 156 AMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 156 a~~~~gi~~~~~~l~~~i~~~ 176 (222)
|++|.|++++|++|++.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988743
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=3.3e-31 Score=199.08 Aligned_cols=163 Identities=33% Similarity=0.572 Sum_probs=126.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
.+.+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45799999999999999999999998887776666654432 23445666778899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCC----------CCHHHHHHHHHHcCC-eEEEEccc
Q 027503 90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSRE----------VNEEEGKILAETEGL-YFMETSAM 157 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 157 (222)
+|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+.+. +..+++..++...++ +++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999987 69888877654 589999999999876443 467788899998886 99999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 027503 158 QNLNVEDAFLQMINQIH 174 (222)
Q Consensus 158 ~~~gi~~~~~~l~~~i~ 174 (222)
+|.|++++|+++++.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=5.8e-30 Score=195.00 Aligned_cols=167 Identities=15% Similarity=0.282 Sum_probs=129.1
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG 84 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (222)
..+....++|+|+|++|||||||+++|.+..+.. .+.++.+... ..+...+ +.+.+|||||++.+..++..+++.
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhc
Confidence 4556789999999999999999999999999877 6677776443 3344433 689999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHcC--------CCCeEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeE
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFCS--------SCMAIVLVGNKSDLTHSREVNEEEGKIL-----AETEGLYF 151 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 151 (222)
+|++|+|||++++.+|..+..|+..+..... .++|++||+||+|+.+.... .+....+ +...++++
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA-AELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH-HHHHHHHTHHHHHTTSCEEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH-HHHHHHhcchhhccCCeeEE
Confidence 9999999999999999999888887754421 25899999999999764321 1222221 14467889
Q ss_pred EEEccccCCCHHHHHHHHHHHHHHhh
Q 027503 152 METSAMQNLNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 152 ~~~Sa~~~~gi~~~~~~l~~~i~~~~ 177 (222)
+++||++|.|++++|++|++.+.+..
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887654
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=3.9e-30 Score=197.47 Aligned_cols=162 Identities=30% Similarity=0.517 Sum_probs=138.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|.+|||||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 5679999999999999999999999888777767664 445566778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEc
Q 027503 90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETEGL-YFMETS 155 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 155 (222)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.. .+..+++..++...++ +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999987 7888887775 459999999999997643 2677888899999886 599999
Q ss_pred cccCCCHHHHHHHHHHHH
Q 027503 156 AMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 156 a~~~~gi~~~~~~l~~~i 173 (222)
|++|.|++++|+++++.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.2e-28 Score=187.30 Aligned_cols=168 Identities=63% Similarity=1.012 Sum_probs=151.7
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
..++++.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|.+.+..++..++..+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 44567889999999999999999999999998888889999988888999999888899999999999888899999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHH
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 165 (222)
+++++|+|+++..+++.+..|+..+........|+++++||+|+.+......++++.++...++.++++|++++.|+.++
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999888988877665556899999999999876777788899999999999999999999999999
Q ss_pred HHHHHHHH
Q 027503 166 FLQMINQI 173 (222)
Q Consensus 166 ~~~l~~~i 173 (222)
|+.|.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.1e-29 Score=188.83 Aligned_cols=161 Identities=21% Similarity=0.324 Sum_probs=127.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
....++|+|+|++|||||||+++|.+..+. .+.++.+. ....+.+++ ..+.+|||||++.+..++..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 345799999999999999999999998875 34555543 344555554 6889999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHH----HHHcCCeEEEEccccCCCHH
Q 027503 89 LLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKIL----AETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~ 163 (222)
++|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+.... .+....+ +...+++++++||++|.|++
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-SEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH-HHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 99999999999999888887765432 246899999999999764321 1222222 22345689999999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 164 DAFLQMINQIHQ 175 (222)
Q Consensus 164 ~~~~~l~~~i~~ 175 (222)
++|+++++.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=6.4e-30 Score=188.90 Aligned_cols=156 Identities=22% Similarity=0.384 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEE
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVY 92 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 92 (222)
+||+|+|++|||||||+++|.+..+.. +.|+.+.. ...+...+ ..+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888754 45666533 33444443 68899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHH-HH----HHcCCeEEEEccccCCCHHHHH
Q 027503 93 DITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKI-LA----ETEGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 93 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~ 166 (222)
|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999988888776553 23458999999999996532 2222221 11 1234679999999999999999
Q ss_pred HHHHHHHHH
Q 027503 167 LQMINQIHQ 175 (222)
Q Consensus 167 ~~l~~~i~~ 175 (222)
+++.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987653
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=9.1e-29 Score=187.43 Aligned_cols=163 Identities=19% Similarity=0.316 Sum_probs=128.8
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCc-CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDE-FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
......++|+|+|.+|||||||+++|.+.. +...+.++.+ .....+.+++ ..+.+|||||++.+..++..++..+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 344578999999999999999999999887 4555556554 4445556655 6889999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccc
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFCS---SCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAM 157 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 157 (222)
|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+. ...++...+.. ..+++++++||+
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCC
Confidence 999999999999999999888888766543 46999999999999653 34455555443 235789999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 027503 158 QNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 158 ~~~gi~~~~~~l~~~i~~ 175 (222)
+|.|++++|++|.+.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTBTHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987643
No 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=5e-29 Score=190.48 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=122.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...++|+++|++|||||||+++|.+..+. .+.++.+.+ ...+.+++ +.+.+|||||++.+..++..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34679999999999999999999988764 344555544 34566766 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeE
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET-----------------EGLYF 151 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 151 (222)
+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+ .+..++...+... .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999988876542 35699999999999965 4566666666542 34679
Q ss_pred EEEccccCCCHHHHHHHHHHH
Q 027503 152 METSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 152 ~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
+++||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=2.5e-29 Score=190.34 Aligned_cols=160 Identities=23% Similarity=0.387 Sum_probs=128.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|++|||||||+++|.+..+...+.++.+.++. .+...+ +.+.+|||||++.+..++..++..+|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 46899999999999999999999999887777777766654 344443 68899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHH-H----HHcCCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKIL-A----ETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~----~~~~~~~~~~Sa~~~~gi~ 163 (222)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..+..... . ...+++++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999988887775532 3569999999999997532 22222221 1 1234679999999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 164 DAFLQMINQIHQ 175 (222)
Q Consensus 164 ~~~~~l~~~i~~ 175 (222)
++|++|++.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=3.3e-28 Score=183.52 Aligned_cols=160 Identities=19% Similarity=0.325 Sum_probs=128.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...++|+|+|++|||||||+++|.+.. ...+.++.+.. ...+..++ ..+.+|||||++.+..++..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999888 55666766543 44555554 68899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 163 (222)
+|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+... .++...... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999998888777554 235699999999999976432 233322221 345689999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027503 164 DAFLQMINQIHQT 176 (222)
Q Consensus 164 ~~~~~l~~~i~~~ 176 (222)
++|+++.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.6e-28 Score=186.35 Aligned_cols=156 Identities=21% Similarity=0.284 Sum_probs=126.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
.+.++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+|||||++.+..++..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 35679999999999999999999998875 344555543 45667776 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcc
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET------------EGLYFMETSA 156 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 156 (222)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+ .++.++...+... .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999988876542 35699999999999975 4455665555432 3468999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 027503 157 MQNLNVEDAFLQMINQ 172 (222)
Q Consensus 157 ~~~~gi~~~~~~l~~~ 172 (222)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 91
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=2e-29 Score=190.30 Aligned_cols=164 Identities=21% Similarity=0.370 Sum_probs=122.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC--cCCCCCCCCcceeeEEEEEEE---CCeEEEEEEEeCCChhhhhhhhHhhhcCCc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD--EFRLDSKPTIGVEFAYRNIRV---GDKLIKAQIWDTAGQERFRAITSSYYRGAL 86 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (222)
.+||+|+|++|||||||+++|.+. .+...+.++.+.++....+.. ++..+.+.+|||+|++.+..++..++.++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999984 455556677777766555443 335678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCe----EEEEcccc
Q 027503 87 GALLVYDITRR-ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN---EEEGKILAETEGLY----FMETSAMQ 158 (222)
Q Consensus 87 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 158 (222)
++++|||++++ .++..+..|+..+..... +.|+++|+||+|+.+.+.+. .+....++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 478899999988876543 48999999999997643322 23345566666776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHh
Q 027503 159 NL-NVEDAFLQMINQIHQT 176 (222)
Q Consensus 159 ~~-gi~~~~~~l~~~i~~~ 176 (222)
|. ++.++++.+.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 97 9999999888877643
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.2e-28 Score=185.45 Aligned_cols=160 Identities=20% Similarity=0.326 Sum_probs=124.2
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCC
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGA 85 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (222)
.......+||+|+|.+|||||||+++|.+..+ ....++.+... ..+.+++ ..+.+|||||++.+..++..++..+
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 44556789999999999999999999999887 34445555443 3455555 6899999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccC
Q 027503 86 LGALLVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQN 159 (222)
Q Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 159 (222)
|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+. ...++..... ...+++++++||++|
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 99999999999999999988887776542 355999999999999653 2333333332 224568999999999
Q ss_pred CCHHHHHHHHHHH
Q 027503 160 LNVEDAFLQMINQ 172 (222)
Q Consensus 160 ~gi~~~~~~l~~~ 172 (222)
.|++++|++|++.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999998764
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=2.4e-29 Score=191.33 Aligned_cols=158 Identities=22% Similarity=0.376 Sum_probs=119.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|++|||||||+++|.+..+.. +.|+.+ .....+...+ +.+.+|||||++.+..++..++..+|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 467999999999999999999999877653 345444 3344455554 68899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHH-HHH----HHcCCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGK-ILA----ETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~ 163 (222)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..++.. .+. ...+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999988887765432 3458999999999996532 222222 111 1234679999999999999
Q ss_pred HHHHHHHHHHH
Q 027503 164 DAFLQMINQIH 174 (222)
Q Consensus 164 ~~~~~l~~~i~ 174 (222)
++|++|++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.2e-28 Score=184.88 Aligned_cols=160 Identities=20% Similarity=0.328 Sum_probs=124.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...++|+|+|++|||||||+++|.++.+. .+.++.+.. ...+.+++ ..+.+|||||++.+..++..++..+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988775 445555533 34455555 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAE-----TEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 163 (222)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988876542 245999999999999753 23344433322 245689999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027503 164 DAFLQMINQIHQT 176 (222)
Q Consensus 164 ~~~~~l~~~i~~~ 176 (222)
++|++|++.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 167 QGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877543
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.1e-27 Score=196.10 Aligned_cols=164 Identities=29% Similarity=0.490 Sum_probs=143.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...++|+++|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 346899999999999999999999988877777776444 4566788888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 027503 90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS------------REVNEEEGKILAETEGL-YFMETS 155 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 155 (222)
+|||++++.++..+. .|+..+..... ++|+++|+||+|+.+. +.+..+++..++...++ +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 68888877654 5999999999998653 56778889999999997 999999
Q ss_pred cccCCCHHHHHHHHHHHHHH
Q 027503 156 AMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 156 a~~~~gi~~~~~~l~~~i~~ 175 (222)
|++|.|++++|++|++.+..
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988763
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=4.7e-29 Score=188.77 Aligned_cols=160 Identities=21% Similarity=0.322 Sum_probs=126.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|++|||||||+++|.+..+.. +.++.+.. ...+..++ ..+.+|||||++.+..++..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 468999999999999999999998877653 44555533 34455554 68899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHH-HH----HHHcCCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGK-IL----AETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~ 163 (222)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++.. .+ +...+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999888887765542 34699999999999975422 22222 11 12245689999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027503 164 DAFLQMINQIHQT 176 (222)
Q Consensus 164 ~~~~~l~~~i~~~ 176 (222)
++|+++.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=7.9e-29 Score=186.65 Aligned_cols=159 Identities=25% Similarity=0.374 Sum_probs=123.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...++|+++|++|||||||+++|.+..+. .+.++.+. ....+..++ +.+.+|||||++.+..++..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999987643 33455543 334555654 68899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 163 (222)
+|||++++.++..+..|+..+... ...++|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999988888766443 235689999999999975432 22222221 1234679999999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 164 DAFLQMINQIHQ 175 (222)
Q Consensus 164 ~~~~~l~~~i~~ 175 (222)
++|+++++.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.3e-29 Score=187.24 Aligned_cols=160 Identities=21% Similarity=0.351 Sum_probs=124.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...++|+|+|++|||||||+++|.++.+ ..+.++.+.. ...+.+++ ..+.+|||||++.+..++..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998776 4445666543 34455555 68899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILAET-----EGLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 163 (222)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++....... .+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888776543 356899999999999653 233333333221 34579999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027503 164 DAFLQMINQIHQT 176 (222)
Q Consensus 164 ~~~~~l~~~i~~~ 176 (222)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=7.6e-29 Score=188.99 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=121.8
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEE--EEEE-CCeEEEEEEEeCCChhhhhhhh---H
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYR--NIRV-GDKLIKAQIWDTAGQERFRAIT---S 79 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~Dt~G~~~~~~~~---~ 79 (222)
..+.++.+||+|+|++|||||||++++.+... .. ++.+.+.... ...+ ++..+.+.+|||||++.+..+. .
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 45567899999999999999999998877432 22 3433333322 2233 2555789999999999987766 8
Q ss_pred hhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC-------CCCCCHHHHHHHHH----H
Q 027503 80 SYYRGALGALLVYDITRR--ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH-------SREVNEEEGKILAE----T 146 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~----~ 146 (222)
.+++++|++|+|||+++. +++..+..|+..+.... .++|++||+||+|+.+ .+.+..+....++. .
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 999999999999999997 66677777777664433 3599999999999865 23445555677777 6
Q ss_pred cCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 147 EGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 147 ~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
.+++|+++||++ .|+.++|+.+++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 788999999999 99999999998764
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.2e-30 Score=199.95 Aligned_cols=162 Identities=30% Similarity=0.537 Sum_probs=136.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|.+|||||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+..++..++..+|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4679999999999999999999998887766666664333 455666777788899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEEc
Q 027503 90 LVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSR------------EVNEEEGKILAETEGL-YFMETS 155 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 155 (222)
+|||++++.++..+. .|+..+..... ++|+++|+||+|+.+.. .+..+++..++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999886 78877766543 58999999999997543 4555667778888887 899999
Q ss_pred cccCCCHHHHHHHHHHHH
Q 027503 156 AMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 156 a~~~~gi~~~~~~l~~~i 173 (222)
|++|.|++++|++|++.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=6.3e-27 Score=182.49 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=122.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh------hhh---hhhhHh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ------ERF---RAITSS 80 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~---~~~~~~ 80 (222)
+..++|+|+|.+|||||||+++|.+..+.....+..+.+.....+...+ ..+.+|||||. +.. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4679999999999999999999999877544344444555555555555 57899999998 331 112344
Q ss_pred hhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHH---HHHHHHHHcC--CeEEE
Q 027503 81 YYRGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEE---EGKILAETEG--LYFME 153 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~ 153 (222)
++..+|++|+|||++++.++.. ...|+..+.... .++|+++|+||+|+.+.+.+..+ ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 5788999999999999877642 234555444332 25899999999999876666554 4566677776 89999
Q ss_pred EccccCCCHHHHHHHHHHHHHHhhhhhh
Q 027503 154 TSAMQNLNVEDAFLQMINQIHQTTIQKS 181 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l~~~i~~~~~~~~ 181 (222)
+||++|.|+.++|++|++.+.+.+....
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~~ 211 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAESI 211 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987765433
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=2.5e-27 Score=175.82 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=117.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhhhc--
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR------AITSSYYR-- 83 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-- 83 (222)
.++|+|+|++|||||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998776655566666666666667766 578999999988664 34456664
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHH
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (222)
.+|++++|+|+++.+. ...|+..+... ++|+++|+||+|+.+.+.+.. +...++...+++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999988543 34466666542 489999999999865433332 3567788888999999999999999
Q ss_pred HHHHHHHHHH
Q 027503 164 DAFLQMINQI 173 (222)
Q Consensus 164 ~~~~~l~~~i 173 (222)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=4.3e-27 Score=175.90 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=123.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGA 88 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (222)
....++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++. .+.+|||||++.+..++..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 456789999999999999999999999888777777777776667777774 578999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-------C--CeEEEEccccC
Q 027503 89 LLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-------G--LYFMETSAMQN 159 (222)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~ 159 (222)
|+|+|++++..... +..+......++|+++|+||+|+.+. ..+......... + ++++++||++|
T Consensus 83 i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 83 ILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 99999988432222 12222233345899999999999753 222322222221 2 58999999999
Q ss_pred CCHHHHHHHHHHHHHHhhh
Q 027503 160 LNVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 160 ~gi~~~~~~l~~~i~~~~~ 178 (222)
.|++++|++|++.+...+.
T Consensus 156 ~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhhhhhcc
Confidence 9999999999988775443
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=193.41 Aligned_cols=168 Identities=27% Similarity=0.337 Sum_probs=124.6
Q ss_pred CCCCCCeeeEEEEEcCC---------CCChHHHHHHHhh---CcCCCCCCCCc-ceeeEEEE--------------EEEC
Q 027503 5 YDEECDYLFKAVMIGDS---------AVGKSNLLSRFAR---DEFRLDSKPTI-GVEFAYRN--------------IRVG 57 (222)
Q Consensus 5 ~~~~~~~~~kI~llG~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~ 57 (222)
.....++.+||+|+|.+ |||||||+++|.+ ..+...+.++. +.++.... ...+
T Consensus 12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (255)
T 3c5h_A 12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED 91 (255)
T ss_dssp TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence 34556788999999999 9999999999998 55555555554 33322111 1245
Q ss_pred CeEEEEEEEe-----------------------CCChhhhhhhhHhhhc---------------------CCcEEEEEEe
Q 027503 58 DKLIKAQIWD-----------------------TAGQERFRAITSSYYR---------------------GALGALLVYD 93 (222)
Q Consensus 58 ~~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~i~v~d 93 (222)
+..+.+.+|| ++|++.+..++..++. ++|++|+|||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 6678899999 5566666667777776 7999999999
Q ss_pred CCCh--hhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccccCCCHHHHHHHH
Q 027503 94 ITRR--ATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAET-EGLYFMETSAMQNLNVEDAFLQM 169 (222)
Q Consensus 94 ~~~~--~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l 169 (222)
++++ .+++.+..|+..+... ...++|++||+||+|+.+.+.+ ++...++.. .+++++++||++|.|++++|++|
T Consensus 172 ~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 172 VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp CBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 9998 9999999999888765 3345999999999999654433 466777766 47899999999999999999999
Q ss_pred HHHHH
Q 027503 170 INQIH 174 (222)
Q Consensus 170 ~~~i~ 174 (222)
++.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88763
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=2e-26 Score=177.65 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=114.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe-EEEEEEEeCCChhhhhh-hhHhhhcCCc
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK-LIKAQIWDTAGQERFRA-ITSSYYRGAL 86 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d 86 (222)
....+||+|+|++|||||||+++|.+..+...+. +.+.+... +.+++. .+.+.+|||||++.+.. ++..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 3567999999999999999999999988776654 33344333 555543 47899999999999887 8889999999
Q ss_pred EEEEEEeCCChh-hHHHHHH-HHHHHHHH--cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH---H--------------
Q 027503 87 GALLVYDITRRA-TFENTKK-WLRELREF--CSSCMAIVLVGNKSDLTHSREVNEEEGKILA---E-------------- 145 (222)
Q Consensus 87 ~~i~v~d~~~~~-s~~~~~~-~~~~l~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~-------------- 145 (222)
++|+|||+++.. ++..+.. |...+... ...++|+++|+||+|+.+..... .....+. .
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAK-LIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHH-HHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHH-HHHHHHHHHHHHHhccchhcccccc
Confidence 999999999854 4555544 44444432 24468999999999997643321 1111111 0
Q ss_pred -------------------Hc--CCeEEEEccccC------CCHHHHHHHHHHH
Q 027503 146 -------------------TE--GLYFMETSAMQN------LNVEDAFLQMINQ 172 (222)
Q Consensus 146 -------------------~~--~~~~~~~Sa~~~------~gi~~~~~~l~~~ 172 (222)
.. +++|+++||++| .|++++|++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 106
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=7.9e-27 Score=176.22 Aligned_cols=158 Identities=21% Similarity=0.251 Sum_probs=120.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC-----------hhhhhhhhHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG-----------QERFRAITSSY 81 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~ 81 (222)
+||+|+|++|||||||+++|.+..+...+.++.+.... .+... .+.+||||| ++.+..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999887766665544433 33333 578999999 67777788888
Q ss_pred hcC-CcEEEEEEeCCChhhHHHH-HHHHHH---------HHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027503 82 YRG-ALGALLVYDITRRATFENT-KKWLRE---------LREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLY 150 (222)
Q Consensus 82 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (222)
++. ++++++++++.+..++..+ ..|... +......++|+++|+||+|+.+.. .+....++...+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 877 7777777777777777776 556542 222233459999999999997644 56677888888764
Q ss_pred -------EEEEccccCCCHHHHHHHHHHHHHHhhhh
Q 027503 151 -------FMETSAMQNLNVEDAFLQMINQIHQTTIQ 179 (222)
Q Consensus 151 -------~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~ 179 (222)
++++||++|.|+.++|+++++.+.+.+.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999988765543
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=2.4e-26 Score=186.96 Aligned_cols=163 Identities=18% Similarity=0.261 Sum_probs=127.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-----hhhhHhhhcC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-----RAITSSYYRG 84 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~~~ 84 (222)
..+||+|+|++|||||||+++|++...... ..+..+.+.....+.+++ .+.+.+|||||++.+ ..++..++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 468999999999999999999988732211 123333444444555544 478999999999988 6788999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCC--CCC----CCHHHHHHHHHHcC---CeEEE
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTH--SRE----VNEEEGKILAETEG---LYFME 153 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~~~ 153 (222)
+|++|+|||++++.+++++..|...+.... ..++|+++|+||+|+.+ .+. +..+++..++..++ +++++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999999999999999999877766554432 34599999999999976 333 45577788888887 78999
Q ss_pred EccccCCCHHHHHHHHHHHHHH
Q 027503 154 TSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
+||++ .++.++|..++..+..
T Consensus 161 tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTTCS
T ss_pred eeecC-ChHHHHHHHHHHHHcC
Confidence 99999 8999999998876543
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=3e-26 Score=173.94 Aligned_cols=160 Identities=13% Similarity=0.165 Sum_probs=112.0
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhh
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG----------QERFRA 76 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~ 76 (222)
-+....++|+|+|++|||||||+++|.+..+.....++.+.+........++ .+.+||||| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence 3456789999999999999999999999876555555555555444455554 589999999 777888
Q ss_pred hhHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--HHHHH-HHHHcCCe
Q 027503 77 ITSSYYRGA---LGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE--EEGKI-LAETEGLY 150 (222)
Q Consensus 77 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~ 150 (222)
++..++..+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+.+.+.. +.... +....+++
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 888888777 9999999999887766532 2222322 3489999999999976544322 12222 32234678
Q ss_pred EEEEccccCCCHHHHHHHHHHHH
Q 027503 151 FMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 151 ~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
++++||++|.|+.++|++|.+.+
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEccCCCCHHHHHHHHHHHh
Confidence 99999999999999999998765
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=9.4e-27 Score=190.99 Aligned_cols=158 Identities=21% Similarity=0.343 Sum_probs=118.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALL 90 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (222)
..+||+|+|.+|||||||+++|.+..+... .+|.+.. ...+...+ +.+.||||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 467999999999999999999998876433 2444433 34445544 689999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHH-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCCHHH
Q 027503 91 VYDITRRATFENTKKWLRELREF-CSSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 164 (222)
|||++++.++..+..|+..+... ...++|++||+||+|+.+... .+...... ...+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 99999999999988877665443 234699999999999976432 22222211 12345799999999999999
Q ss_pred HHHHHHHHHHH
Q 027503 165 AFLQMINQIHQ 175 (222)
Q Consensus 165 ~~~~l~~~i~~ 175 (222)
+|++|++.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=3.8e-26 Score=172.40 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=125.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhhhc
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR------AITSSYYR 83 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~ 83 (222)
...++|+|+|++|||||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.+. .++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 4679999999999999999999998766555566666777777777766 678999999988764 45566664
Q ss_pred --CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503 84 --GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN 161 (222)
Q Consensus 84 --~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (222)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.+...+. .....++...+++++++||++|.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 5999999999875 4555667666654 358999999999986544433 356778888899999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027503 162 VEDAFLQMINQIHQTT 177 (222)
Q Consensus 162 i~~~~~~l~~~i~~~~ 177 (222)
+.++|+++++.+.+..
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998876543
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2.7e-26 Score=198.11 Aligned_cols=160 Identities=19% Similarity=0.363 Sum_probs=125.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
...+||+|+|.+|||||||+++|.+..+. ...+|.+.+.. .+...+ +.+.+|||||++.+..++..++..+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998854 34465554443 344444 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccccCCCHH
Q 027503 90 LVYDITRRATFENTKKWLRELREFC-SSCMAIVLVGNKSDLTHSREVNEEEGKILA-----ETEGLYFMETSAMQNLNVE 163 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 163 (222)
+|||++++.++..+..|+..+.... ..++|++||+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 9999999999999988887775543 3569999999999996532 222222211 1133569999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027503 164 DAFLQMINQIHQT 176 (222)
Q Consensus 164 ~~~~~l~~~i~~~ 176 (222)
++|++|.+.+...
T Consensus 473 ~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 473 EGLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876543
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=1.6e-25 Score=164.57 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhhhcC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER-------FRAITSSYYRG 84 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 84 (222)
+||+++|++|||||||+++|.+..+. ....++.+.+.....+..++. .+.+|||||.+. +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988753 233344555566666777764 689999999876 34566778899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCCHH
Q 027503 85 ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLNVE 163 (222)
Q Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 163 (222)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. +....++ ..++ +++++||++|.|+.
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998644332 122222333 248999999999997542 2334444 5676 79999999999999
Q ss_pred HHHHHHHHHH
Q 027503 164 DAFLQMINQI 173 (222)
Q Consensus 164 ~~~~~l~~~i 173 (222)
++|+++++.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=1.2e-25 Score=178.45 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=122.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhhh-
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA------ITSSYY- 82 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~- 82 (222)
...++|+|+|++|||||||+++|.+..+.....++.+.+.....+...+ ..+.+|||||...+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999999876655566666666666666655 6789999999887654 335555
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503 83 -RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN 161 (222)
Q Consensus 83 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (222)
..+|++++|+|+++.++.. .|+..+.. .++|+++|+||+|+.+.+.+. .....++...+++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999875433 35555544 359999999999986544443 246778888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027503 162 VEDAFLQMINQIH 174 (222)
Q Consensus 162 i~~~~~~l~~~i~ 174 (222)
+.++|+++.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=5.7e-26 Score=169.70 Aligned_cols=154 Identities=21% Similarity=0.195 Sum_probs=115.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------h--hHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA------I--TSSY 81 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~--~~~~ 81 (222)
..++|+|+|++|||||||+++|.+..+. ....++.+.+.....+.+++. .+.+|||||.+.+.. + ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3579999999999999999999987643 233455556666677788774 578999999764211 1 1246
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCC
Q 027503 82 YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLN 161 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (222)
++.+|++++|+|++++.+++. ..|+..+......++|+++|+||+|+.+... .++...+.+++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 789999999999999887764 4677777766655699999999999854211 11222467899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027503 162 VEDAFLQMINQIH 174 (222)
Q Consensus 162 i~~~~~~l~~~i~ 174 (222)
++++|++|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 115
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=1.9e-26 Score=186.87 Aligned_cols=157 Identities=16% Similarity=0.203 Sum_probs=119.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCC---CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh---hhHhhhcCCcE
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRL---DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA---ITSSYYRGALG 87 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~ 87 (222)
||+++|+.|||||||++++.+..++. ...+|.+.+... + + ..+.+.+|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654432 245777766653 2 2 337899999999999964 46899999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----cCCeEEEE
Q 027503 88 ALLVYDITRR--ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS-------REVNEEEGKILAET----EGLYFMET 154 (222)
Q Consensus 88 ~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 154 (222)
+|+|||+++. ++...+..|+..+.... .++|+++|+||+|+... +.+..++++++++. .++.|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 22233333344444433 45999999999999764 34566667777775 67899999
Q ss_pred ccccCCCHHHHHHHHHHHHHHhh
Q 027503 155 SAMQNLNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 155 Sa~~~~gi~~~~~~l~~~i~~~~ 177 (222)
||++ .+|.++|..+++.+.+..
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhH
Confidence 9998 589999999998877553
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=7.7e-25 Score=165.78 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=116.0
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhh
Q 027503 5 YDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG----------QERF 74 (222)
Q Consensus 5 ~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~ 74 (222)
...+.+..++|+|+|++|||||||+++|.+..+. ...++.+.+........+. .+.+||||| .+.+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~ 91 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW 91 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence 3445567889999999999999999999998743 3334444444444444443 578999999 6667
Q ss_pred hhhhHhhhcCC---cEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHc
Q 027503 75 RAITSSYYRGA---LGALLVYDITRRATFE--NTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEGKILAETE 147 (222)
Q Consensus 75 ~~~~~~~~~~~---d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~ 147 (222)
..++..++..+ |++++|+|+++..+.. .+..|+.. . ++|+++|+||+|+.+... ...+....++...
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 77777787766 9999999998764333 33334332 2 489999999999975332 2223445555553
Q ss_pred -CCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503 148 -GLYFMETSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 148 -~~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
+++++++||++|.|++++|++|.+.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 4789999999999999999999987643
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.1e-25 Score=178.46 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----------hhHhhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA----------ITSSYY 82 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~ 82 (222)
.+|+|+|.+|||||||+|+|.+..+.....++.+.+.....+..++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998766666788888888888888774 789999999876543 566677
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCC
Q 027503 83 --RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNL 160 (222)
Q Consensus 83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (222)
..+|++|+|+|+++.+++..+..| + ...++|+++|+||+|+.+.+... .....++...+++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l---~~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---L---FELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---H---TTSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---H---HHcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999987655443333 2 23359999999999986543332 22455777889999999999999
Q ss_pred CHHHHHHHHHHH
Q 027503 161 NVEDAFLQMINQ 172 (222)
Q Consensus 161 gi~~~~~~l~~~ 172 (222)
|++++|+++.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=3.4e-24 Score=174.32 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=127.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhh----------h
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVG-DKLIKAQIWDTAGQERF----------R 75 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~----------~ 75 (222)
+....-.|+|+|.+|||||||+|+|++..+.... .+..+..........+ + ..+.+|||||.... .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence 4456788999999999999999999998876433 3334344444445554 4 57899999998543 3
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEE
Q 027503 76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--LYFME 153 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~ 153 (222)
.....++..+|++++|+|++++.++.+...|+..+... ++|+++|+||+|+........+....+....+ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 56678889999999999999988888877777776653 48999999999997445555667777877775 78999
Q ss_pred EccccCCCHHHHHHHHHHHHH
Q 027503 154 TSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 154 ~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
+||++|.|++++|+++.+.+.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSC
T ss_pred EeCCCCCCHHHHHHHHHHhCc
Confidence 999999999999999988763
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=9.4e-26 Score=196.26 Aligned_cols=165 Identities=20% Similarity=0.249 Sum_probs=126.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEE------E--EECCeEEEEEEEeCCChhhhhhhhH
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN------I--RVGDKLIKAQIWDTAGQERFRAITS 79 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~Dt~G~~~~~~~~~ 79 (222)
.....+||+|+|.+|||||||+++|.+..+.....++.+.+..... + ..++..+.+.+||+||++.+..++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3457899999999999999999999999988777788877776542 1 2223357899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccC
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQN 159 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (222)
.++..+|++|+|+|+++. +.+..|+..+..... +.|+++|+||+|+.+.+.+..+..+.++...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999765 556778888887765 4899999999999887788888888888889999999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 027503 160 LNVEDAFLQMINQIHQT 176 (222)
Q Consensus 160 ~gi~~~~~~l~~~i~~~ 176 (222)
.|++++|+++.+.+.+.
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999887653
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=2e-25 Score=178.36 Aligned_cols=153 Identities=19% Similarity=0.181 Sum_probs=116.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhhhc-
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR------AITSSYYR- 83 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 83 (222)
..++|+|+|++|||||||+|+|.+........++.+.+... ..+.. ...+.+|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~--~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS--GLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE--EECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE--EEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 45899999999999999999999876545555554444333 33443 4578999999988765 45566665
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 84 -GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 84 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
.+|++|+|+|+++.++. ..|...+.. .++|+++|+||+|+.+.+.+. .....++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886543 345555544 358999999999986544443 3567788888999999999999999
Q ss_pred HHHHHHHHHHH
Q 027503 163 EDAFLQMINQI 173 (222)
Q Consensus 163 ~~~~~~l~~~i 173 (222)
+++|+++++.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=4.3e-25 Score=176.81 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=119.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh----------hhhHh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR----------AITSS 80 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~ 80 (222)
..++|+|+|.+|||||||+|+|.+..+.....++.+.+.....+...+ ..+.+|||||...+. .++..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999999876666677777777777777766 367899999987655 22334
Q ss_pred hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503 81 YY--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ 158 (222)
Q Consensus 81 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (222)
++ ..+|++|+|+|+++.+....+. ..+... ++|+++|+||+|+.+..... .....++...+++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~---~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLT---LQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHH---HHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHH---HHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 43 7999999999999865544433 334333 48999999999986533322 234667788899999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQIH 174 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~ 174 (222)
|.|++++|+++.+.+.
T Consensus 153 g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKA 168 (274)
T ss_dssp GHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999998876543
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=1.3e-24 Score=168.31 Aligned_cols=168 Identities=19% Similarity=0.168 Sum_probs=111.6
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC-CeEEEEEEEeCCC----------hhhh
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG-DKLIKAQIWDTAG----------QERF 74 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G----------~~~~ 74 (222)
..+....++|+|+|.+|||||||+++|++..+........+.+......... .....+.|||||| .+.+
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 3445678999999999999999999999987321222222223232333333 2235789999999 3455
Q ss_pred hhhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--HH-HHHHHHH--
Q 027503 75 RAITSSYYRG---ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE--EE-GKILAET-- 146 (222)
Q Consensus 75 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~-~~~~~~~-- 146 (222)
..+...++.. +|++++|+|++++.+... ..|+..+.. .++|+++|+||+|+.+...... +. ...+...
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 6666666665 788999999988644222 334444443 3489999999999976333211 11 1222222
Q ss_pred ----cCCeEEEEccccCCCHHHHHHHHHHHHHHhh
Q 027503 147 ----EGLYFMETSAMQNLNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 147 ----~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~ 177 (222)
.+.+++++||++|.|+.++|++|.+.+....
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 5578999999999999999999998875443
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=2.2e-24 Score=172.43 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=122.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhhh--
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA------ITSSYY-- 82 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~-- 82 (222)
+.++|+|+|++|||||||+++|.+..+.....++.+.+.....+...+. .+.+|||||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4689999999999999999999998876666777888887778888774 589999999887654 556666
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..+|++++|+|+++.+ ....|+..+.... .+|+++|+||+|+.+.+.... ....++...+++++++|+++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence 6899999999998863 2233444443332 289999999999865333322 266778888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 163 EDAFLQMINQIH 174 (222)
Q Consensus 163 ~~~~~~l~~~i~ 174 (222)
.++|+.+.+.+.
T Consensus 154 ~~l~~~i~~~~~ 165 (271)
T 3k53_A 154 EELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=9.6e-25 Score=168.67 Aligned_cols=147 Identities=21% Similarity=0.317 Sum_probs=106.7
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhh
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD---SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYY 82 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 82 (222)
.......++|+|+|++|||||||+++|.+..+... ..++.+.++ ....+.+|||||++.+...+..++
T Consensus 6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~ 76 (218)
T 1nrj_B 6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYL 76 (218)
T ss_dssp ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHH
T ss_pred CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHH
Confidence 34456789999999999999999999999876542 333333222 335789999999999988888888
Q ss_pred cC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHH----cCCCCeEEEEEeCCCCCCCCCCC------HHHHHHHHHHc
Q 027503 83 RG----ALGALLVYDIT-RRATFENTKKWLRELREF----CSSCMAIVLVGNKSDLTHSREVN------EEEGKILAETE 147 (222)
Q Consensus 83 ~~----~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~ 147 (222)
.. +|++|+|+|++ ++.++..+..|+..+... ...++|+++|+||+|+.+...+. .++...++...
T Consensus 77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 156 (218)
T ss_dssp HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 77 89999999999 888888888888776554 34569999999999998755443 34456667777
Q ss_pred CCeEEEEccccCCC
Q 027503 148 GLYFMETSAMQNLN 161 (222)
Q Consensus 148 ~~~~~~~Sa~~~~g 161 (222)
+++|+++|+++|.+
T Consensus 157 ~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 157 KKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHC--------
T ss_pred hccccccccccccc
Confidence 78899999998875
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1.4e-23 Score=178.40 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=117.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQ----------ERFRAIT 78 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 78 (222)
+..++|+|+|.+|||||||+|+|++..+. ....++.+.+.....+..++. .+.+|||||+ +.+..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 46799999999999999999999988764 344455566666666777774 5899999997 4455444
Q ss_pred H-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH-HHHHH----HcCCeEE
Q 027503 79 S-SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG-KILAE----TEGLYFM 152 (222)
Q Consensus 79 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~ 152 (222)
. .++..+|++++|+|++++.++++. .|+..+.. .++|+++|+||+|+.+.+....++. ..+.. ..+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 478899999999999998887775 46665554 3489999999999986555433333 22222 2468999
Q ss_pred EEccccCCCHHHHHHHHHHHHHHh
Q 027503 153 ETSAMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 153 ~~Sa~~~~gi~~~~~~l~~~i~~~ 176 (222)
++||++|.|+.++|+.+.+.+.+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998877653
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.7e-22 Score=167.47 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=123.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhHh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR---------AITSS 80 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~ 80 (222)
...++|+++|.+|||||||+++|.+..+.....+..+.......+...+ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998775433334444455555555554 578999999975321 12224
Q ss_pred hhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503 81 YYRGALGALLVYDITRRA--TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ 158 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (222)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.+...+ +....++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 455799999999998876 67777788888876554 5899999999999764332 445566667889999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 027503 159 NLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~~~ 176 (222)
|.|++++|+++.+.+...
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.90 E-value=3.5e-23 Score=176.90 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=100.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--------hHhhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI--------TSSYY 82 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 82 (222)
.++|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 478999999999999999999987643 34456666677667778877 56899999998765533 34478
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..+|++++|+|++++.++..+..+...+.... ++|+++|+||+|+...... ....+......+++++||++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence 89999999999999887754433333333332 5899999999999765432 223344433478999999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 163 EDAFLQMINQIH 174 (222)
Q Consensus 163 ~~~~~~l~~~i~ 174 (222)
+++|++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988775
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=3.3e-23 Score=176.94 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=121.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG----------QERFRAI 77 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 77 (222)
.+..++|+++|.+|+|||||+++|.+... .....++.+.+.....+..++. .+.+||||| ++.+..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 35679999999999999999999997653 2334455556655566677774 789999999 5666666
Q ss_pred hH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeE
Q 027503 78 TS-SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETE-----GLYF 151 (222)
Q Consensus 78 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~ 151 (222)
.. .++..+|++|+|+|++++..... ..|+..+.. .++|+++|+||+|+.+.+....++....+... ++++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 55 47899999999999998654333 445555554 34899999999999876666666666666554 5799
Q ss_pred EEEccccCCCHHHHHHHHHHHHHHhh
Q 027503 152 METSAMQNLNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 152 ~~~Sa~~~~gi~~~~~~l~~~i~~~~ 177 (222)
+++||++|.|+.++|+++.+.+.+..
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998775543
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=7.9e-24 Score=178.23 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=118.5
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh-----
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI----- 77 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----- 77 (222)
|...+....++|+|+|+.|+|||||+++|++..+. ....+..+.+.....+...+.. .+.+|||||++.+..+
T Consensus 26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~ 104 (423)
T 3qq5_A 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRV 104 (423)
T ss_dssp CCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCH
T ss_pred cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHH
Confidence 34456678899999999999999999999988763 3344555666666777776653 7899999998876543
Q ss_pred --hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027503 78 --TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETS 155 (222)
Q Consensus 78 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (222)
+..++..+|++|+|+|+... .....|+..+... ++|+++|+||+|+...... +....++...+++++++|
T Consensus 105 ~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCS
T ss_pred HHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEE
Confidence 45688899999999999433 2335566666655 4899999999999765543 566677777889999999
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 027503 156 AMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 156 a~~~~gi~~~~~~l~~~i~ 174 (222)
|++|.|++++|++|.+.+.
T Consensus 177 Aktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHhhh
Confidence 9999999999999988774
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=2e-22 Score=163.19 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=110.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--------FRAITSS 80 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~ 80 (222)
-+..+|+|+|.+|||||||+|+|++..+... ..+..+.......+..++ ..+.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence 4667899999999999999999999887543 233333333333334443 5789999999765 4556677
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHHcCCCCeEEEEEeCCCCCCCCC-CCHHHHHHHHHHcCCeEEEEcccc
Q 027503 81 YYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVGNKSDLTHSRE-VNEEEGKILAETEGLYFMETSAMQ 158 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (222)
+++.+|++++|+|++++.+... .|+ ..+.... .+.|+++|+||+|+.+... + .+....+ ....+++++||++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLV-GKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALD 156 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTC
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-CCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCC
Confidence 8999999999999998754432 333 4444432 3589999999999875322 1 1222222 1235799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQI 173 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i 173 (222)
|.|++++|+.+.+.+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999887654
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=3.5e-22 Score=170.88 Aligned_cols=152 Identities=24% Similarity=0.264 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh-hhh--------hhhHhhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-RFR--------AITSSYY 82 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~--------~~~~~~~ 82 (222)
++|+|+|.+|||||||+|+|.+..+. ....++.+.+.....+.+++ ..+.+|||||.. .+. .....++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 89999999999999999999987643 44456666777777778877 468999999987 543 2245678
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..+|++|+|+|++++.++++.. ++..+ .++|+++|+||+|+.+. ...++...+.. .+++++++||++|.|+
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGL 392 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCH
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCH
Confidence 9999999999999987776543 22322 24899999999999653 33344444332 4478999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027503 163 EDAFLQMINQIHQ 175 (222)
Q Consensus 163 ~~~~~~l~~~i~~ 175 (222)
+++|++|.+.+..
T Consensus 393 ~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 393 EKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997664
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=1.1e-22 Score=167.06 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhHhhhc---CC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FRAITSSYYR---GA 85 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~---~~ 85 (222)
.+|+|+|.+|||||||+++|.+........+..+.......+.+++. ..+.+|||||... +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36889999999999999999986543333333444444445555542 3689999999653 3334455544 59
Q ss_pred cEEEEEEeCCC---hhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcccc
Q 027503 86 LGALLVYDITR---RATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--LYFMETSAMQ 158 (222)
Q Consensus 86 d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 158 (222)
|++|+|+|+++ ..+++.+..|+..+..+.. ..+|+++|+||+|+.+. .+....+..... .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7788888889998887652 46999999999998752 234566666666 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~~ 175 (222)
+.|+++++++|.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999888753
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=8.8e-22 Score=167.40 Aligned_cols=151 Identities=23% Similarity=0.304 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER---------FRAITSSYY 82 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 82 (222)
.+|+|+|.+|||||||+|+|.+.... ....++.+.+.....+..++. .|.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987653 344566666777777888774 579999999663 344567789
Q ss_pred cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH-HHHHHHcCC-eEEEEcccc
Q 027503 83 RGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG-KILAETEGL-YFMETSAMQ 158 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 158 (222)
+.+|++++|+|+.++.+..+ +..|+ ... ++|+++|+||+|+.+. . .... ..+. ..++ +++++||.+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~---~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFL---RKS---TVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHH---HHH---TCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHH---HHc---CCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999988655433 22332 222 3899999999997531 1 1222 3343 4566 789999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~~ 175 (222)
|.|+.++|+++.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999988754
No 134
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=3.7e-21 Score=150.85 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=107.3
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCC--CcceeeEEEEEEECCeEEEEEEEeCCCh-----------hhh
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP--TIGVEFAYRNIRVGDKLIKAQIWDTAGQ-----------ERF 74 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~~~ 74 (222)
..+..++|+|+|.+|||||||+|+|++..+.....+ +.+.......+..++ ..+.+|||||. ..+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345689999999999999999999999887666555 445555556666766 46899999993 334
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCCCCCCC------HHHHHHHHHH
Q 027503 75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTHSREVN------EEEGKILAET 146 (222)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~ 146 (222)
.......++.+|++|+|+|+++.... . ..|+..+.... ....|++||+||+|+.+...+. .+..+.+...
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~-~-~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEE-E-HKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSH-H-HHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHH-H-HHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 45555667789999999998764331 1 22333332211 1126899999999987644333 2356777778
Q ss_pred cCCeEEEEccccC-----CCHHHHHHHHHHHHHH
Q 027503 147 EGLYFMETSAMQN-----LNVEDAFLQMINQIHQ 175 (222)
Q Consensus 147 ~~~~~~~~Sa~~~-----~gi~~~~~~l~~~i~~ 175 (222)
.+..++.++...+ .++.++|+.+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888888776643 6788888777665543
No 135
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=1.6e-21 Score=160.76 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=102.1
Q ss_pred EEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHHc-CCCCeE
Q 027503 52 RNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITR----------RATFENTKKWLRELREFC-SSCMAI 120 (222)
Q Consensus 52 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ 120 (222)
..+.+++ +.+.+||++|++.++.+|..++++++++|+|||+++ ..++.+...|+..+.... -.++|+
T Consensus 186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 4455554 789999999999999999999999999999999999 457888888888776542 245999
Q ss_pred EEEEeCCCCCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 121 VLVGNKSDLTHSR---------------EVNEEEGKILAE-----------TEGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 121 ivv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
+||+||+|+.+.+ .++.+++..++. ..++++++|||+++.||.++|+++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985322 356778888876 35678999999999999999999999887
Q ss_pred Hhh
Q 027503 175 QTT 177 (222)
Q Consensus 175 ~~~ 177 (222)
+..
T Consensus 344 ~~~ 346 (353)
T 1cip_A 344 KNN 346 (353)
T ss_dssp HHC
T ss_pred HHH
Confidence 543
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.86 E-value=6.9e-21 Score=160.21 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=114.6
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEE------------------------ECCeEEEE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIR------------------------VGDKLIKA 63 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~ 63 (222)
.....++|+++|++++|||||+++|.+....... .+....+. .......+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL------GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI 77 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS------EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccccc------CccccceeeccccccccceecccccccccccccccccceE
Confidence 3457899999999999999999999875432211 00000000 01123689
Q ss_pred EEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC--HHHHH
Q 027503 64 QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN--EEEGK 141 (222)
Q Consensus 64 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~ 141 (222)
.+|||||++.+...+...+..+|++|+|+|++++.++.....|+..+..... .|+++|+||+|+.+..... .++..
T Consensus 78 ~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~Dl~~~~~~~~~~~~i~ 155 (403)
T 3sjy_A 78 SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKVDVVSKEEALSQYRQIK 155 (403)
T ss_dssp EEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999998766777777776655542 4899999999997632211 11122
Q ss_pred HHHHHc---CCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 142 ILAETE---GLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 142 ~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
.+.... +++++++||++|.|+.+++++|.+.+.
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 222221 578999999999999999999887653
No 137
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=3.5e-21 Score=165.19 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=111.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCc-------CCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDE-------FRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSY 81 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 81 (222)
....++|+++|++++|||||+++|.+.. +.....+..+.+.....+.+++ ..+.+|||||++.|...+...
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3568999999999999999999999866 2233344444554444555665 578999999999998888999
Q ss_pred hcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHc----CCeEE
Q 027503 82 YRGALGALLVYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEGKILAETE----GLYFM 152 (222)
Q Consensus 82 ~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~ 152 (222)
+..+|++|+|+|+++ +++.+.+ ..+.. .++|+++|+||+|+.+.... ..++...+.... +++++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 999999999999998 3443332 22332 24888999999999753211 122334444444 57899
Q ss_pred EEccccCCCHHHHHHHHHHHHH
Q 027503 153 ETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 153 ~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
++||++|.|+.+++++|.+.+.
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999988775
No 138
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=1.3e-20 Score=156.11 Aligned_cols=159 Identities=20% Similarity=0.131 Sum_probs=111.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh---------hhhhhhHhhhcC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE---------RFRAITSSYYRG 84 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~ 84 (222)
.|+|+|.+|||||||+|+|.+..+.....+..+.+.....+.+++ ..+.+|||+|.. .+... ...+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence 499999999999999999999876555555666667777888887 467999999962 23332 335789
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHc---CCeEEEEcccc
Q 027503 85 ALGALLVYDITRRA--TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN-EEEGKILAETE---GLYFMETSAMQ 158 (222)
Q Consensus 85 ~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~---~~~~~~~Sa~~ 158 (222)
+|++++|+|++++. ....+..|...+......+.|+++|+||+|+....... ...+..++... +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 55666667777766655568999999999987533100 11222333444 34689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i~~ 175 (222)
|.|+++++++|.+.+..
T Consensus 338 g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcc
Confidence 99999999999887654
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=1e-20 Score=159.41 Aligned_cols=160 Identities=23% Similarity=0.189 Sum_probs=103.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCc---CCCCCCCCcceee--EEEEEEE-------------C--C----eEEEEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDE---FRLDSKPTIGVEF--AYRNIRV-------------G--D----KLIKAQ 64 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~--~~~~~~~-------------~--~----~~~~~~ 64 (222)
....++|+++|+.++|||||+++|.+.. +.....+..+.+. ....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3467999999999999999999998543 2233334233332 2222211 1 1 136899
Q ss_pred EEeCCChhhhhhhhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHH
Q 027503 65 IWDTAGQERFRAITSSYYRGALGALLVYDITRR----ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEE 138 (222)
Q Consensus 65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~ 138 (222)
+|||||++.|...+...+..+|++|+|+|++++ ++.+.+. .+... .. .|+++++||+|+.+... ...+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l-~~-~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL-GI-DKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT-TC-CCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc-CC-CeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999988888888899999999999964 3444433 22222 21 57999999999976443 2234
Q ss_pred HHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 139 EGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 139 ~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
+...+... .+++++++||++|.|+++++++|.+.+.
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 45555554 3578999999999999999999887543
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=5.6e-22 Score=168.90 Aligned_cols=152 Identities=20% Similarity=0.251 Sum_probs=105.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--------hHhhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAI--------TSSYY 82 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 82 (222)
.++|+|+|++|+|||||+|+|.+..+. ....++.+.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 578999999999999999999987654 34456666666656677777 46799999997654332 23467
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ....+. .+.+++++||++|.|+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI 371 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence 89999999999998766554 34444442 26999999999997644332 111111 3568999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027503 163 EDAFLQMINQIHQ 175 (222)
Q Consensus 163 ~~~~~~l~~~i~~ 175 (222)
++++++|.+.+..
T Consensus 372 ~eL~~~i~~~~~~ 384 (462)
T 3geh_A 372 DSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 141
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=8e-21 Score=166.07 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=111.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc--CC-----CCC------CCCcceeeEE--EEEEE---CCeEEEEEEEeCCCh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDE--FR-----LDS------KPTIGVEFAY--RNIRV---GDKLIKAQIWDTAGQ 71 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~--~~-----~~~------~~~~~~~~~~--~~~~~---~~~~~~~~l~Dt~G~ 71 (222)
+...+|+|+|+.++|||||+++|+... +. ... ....+.++.. ..+.+ ++..+.+.||||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 356799999999999999999998632 11 000 0112223322 22222 455678999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 027503 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-- 149 (222)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 149 (222)
..|...+..++..+|++|+|+|++++........|...+. .++|+++|+||+|+.+.. ..+....+....++
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA 155 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999877776666655443 348999999999997543 23445666666676
Q ss_pred -eEEEEccccCCCHHHHHHHHHHHHH
Q 027503 150 -YFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 150 -~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
+++++||++|.|++++|+++++.+-
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCC
Confidence 4999999999999999999887653
No 142
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.85 E-value=6.6e-21 Score=151.19 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=107.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCC-cceeeEEEEEEECCeEEEEEEEeCCChhhhh-----------
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPT-IGVEFAYRNIRVGDKLIKAQIWDTAGQERFR----------- 75 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------- 75 (222)
....++|+|+|++|||||||+++|++... .....++ .+.......+..++ ..+.||||||...+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34679999999999999999999998773 3333343 44555555566665 468999999976542
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEe-CCCCCCCCCCCH-------HHHHHHHH
Q 027503 76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGN-KSDLTHSREVNE-------EEGKILAE 145 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~~ 145 (222)
.....+++.+|++|+|+|+++..... ..++..+..... ...|+++|+| |+|+... .+.. .....+..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence 12234678999999999998632211 122233333321 1256666666 9999742 2222 22334555
Q ss_pred HcCCe---E--EEEccccCCCHHHHHHHHHHHHHH
Q 027503 146 TEGLY---F--METSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 146 ~~~~~---~--~~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
..+.. + +++||++|.|+.++|+++.+.+.+
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 55432 2 789999999999999999988765
No 143
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=6.7e-21 Score=155.07 Aligned_cols=126 Identities=15% Similarity=0.196 Sum_probs=100.9
Q ss_pred EEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHHc-CCCC
Q 027503 50 AYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT----------RRATFENTKKWLRELREFC-SSCM 118 (222)
Q Consensus 50 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~ 118 (222)
....+...+ +.+.+||++|++.++.+|..++++++++|+|+|++ +..++.+...|+..+.... ..++
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 334455554 78999999999999999999999999999999664 5667777777777765433 2459
Q ss_pred eEEEEEeCCCCCCCC----------------CCCHHHHHHHHH----------HcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 119 AIVLVGNKSDLTHSR----------------EVNEEEGKILAE----------TEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 119 p~ivv~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
|++|++||+|+.+++ ..+.+++..+.. ..++.++++||+++.+|+++|..+.+.
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 999999999986433 467778887743 456789999999999999999999999
Q ss_pred HHHhh
Q 027503 173 IHQTT 177 (222)
Q Consensus 173 i~~~~ 177 (222)
+.+..
T Consensus 316 Il~~~ 320 (327)
T 3ohm_A 316 ILQLN 320 (327)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88654
No 144
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=9.2e-22 Score=157.46 Aligned_cols=160 Identities=16% Similarity=0.219 Sum_probs=92.2
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------CCCcceeeEEEEEEECCeEEEEEEEeCCChh-------h
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS--------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-------R 73 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~ 73 (222)
+...++|+|+|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 456899999999999999999998876654332 3455555555555556666799999999962 2
Q ss_pred hhhhh-------Hhhhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503 74 FRAIT-------SSYYR-------------GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133 (222)
Q Consensus 74 ~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 133 (222)
+..+. ..++. .+|+++++++.....-...-..++..+.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 33332 33333 37899999977652211221223444433 59999999999986533
Q ss_pred CCCH--HHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 134 EVNE--EEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 134 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
.... ..........+++++.+|+.++.|+.+++++|.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 2211 22344455678999999999999999999887653
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=1.5e-20 Score=164.06 Aligned_cols=159 Identities=21% Similarity=0.257 Sum_probs=114.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc--CCC-----CC--------CCCcceeeEEEEEEE---CCeEEEEEEEeCCCh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDE--FRL-----DS--------KPTIGVEFAYRNIRV---GDKLIKAQIWDTAGQ 71 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~--~~~-----~~--------~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~ 71 (222)
+...+|+|+|+.++|||||+++|+... +.. .. ....+.......+.+ ++..+.+.||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 467899999999999999999997531 110 00 011111111112222 455678999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 027503 72 ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-- 149 (222)
Q Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 149 (222)
..|...+...+..+|++|+|+|++++...+....|..... .++|+++|+||+|+.+.. ..+...++....++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999888999999999999999999877777666655443 348999999999997533 23445566666676
Q ss_pred -eEEEEccccCCCHHHHHHHHHHHHH
Q 027503 150 -YFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 150 -~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
+++++||++|.|+.++|+++++.+-
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999999887653
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=1.3e-20 Score=158.82 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=110.7
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcC---CCCCCCCcceeeEEEEEEE---------------C--C----eEEEE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEF---RLDSKPTIGVEFAYRNIRV---------------G--D----KLIKA 63 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~---------------~--~----~~~~~ 63 (222)
.....++|+++|+.++|||||+++|.+... .....+..+.+.......+ + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 346789999999999999999999986432 2222343333333222222 0 1 13689
Q ss_pred EEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCH
Q 027503 64 QIWDTAGQERFRAITSSYYRGALGALLVYDITRR----ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNE 137 (222)
Q Consensus 64 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~ 137 (222)
.+|||||++.|.......+..+|++|+|+|++++ ++.+.+. .+.... . .|+++|+||+|+.+... ...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~-~-~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG-Q-KNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT-C-CCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC-C-CcEEEEEECccCCCHHHHHHHH
Confidence 9999999999888888888899999999999964 3444433 222222 1 57899999999976332 112
Q ss_pred HHHHHHHHH---cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 138 EEGKILAET---EGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 138 ~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
++...+... .+++++++||++|.|+++++++|.+.+.
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 233444433 3578999999999999999998886543
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=1.1e-20 Score=160.65 Aligned_cols=161 Identities=22% Similarity=0.161 Sum_probs=109.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-----------h
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA-----------I 77 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 77 (222)
+..++|+|+|++|||||||+|+|.+.... ....++.+.+.....+.+++. .+.+|||+|...... .
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 45699999999999999999999987642 233445555555566777775 578999999743221 1
Q ss_pred -hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH-HH----HHHcCCeE
Q 027503 78 -TSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK-IL----AETEGLYF 151 (222)
Q Consensus 78 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~ 151 (222)
...++..+|++++|+|+.++.+..+. .+...+.. .++|+++|+||+|+.+.+....++.. .+ ....++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 13467889999999999987665542 23333332 35899999999999765443333322 22 22345789
Q ss_pred EEEccccCCCHHHHHHHHHHHHHHh
Q 027503 152 METSAMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 152 ~~~Sa~~~~gi~~~~~~l~~~i~~~ 176 (222)
+++||++|.|+.++|+.+.+.+.+.
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999998766543
No 148
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=6.2e-21 Score=157.23 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=94.3
Q ss_pred eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCC
Q 027503 59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT----------RRATFENTKKWLRELREFC-SSCMAIVLVGNKS 127 (222)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~ 127 (222)
..+.+.+|||+|++.++.+|..++++++++|+|||++ +..+++++..|+..+.... ..++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7789999888888876543 2459999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEEccccCCCHHHHHHHHH
Q 027503 128 DLTHSRE--V-------------------NEEEGKILAET----------------EGLYFMETSAMQNLNVEDAFLQMI 170 (222)
Q Consensus 128 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~~~~~l~ 170 (222)
|+.+++. + +.+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853211 1 13556666432 234579999999999999999999
Q ss_pred HHHHHhhh
Q 027503 171 NQIHQTTI 178 (222)
Q Consensus 171 ~~i~~~~~ 178 (222)
+.+.+...
T Consensus 341 ~~I~~~~l 348 (354)
T 2xtz_A 341 ETLRRRNL 348 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98875543
No 149
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=1.8e-20 Score=151.78 Aligned_cols=157 Identities=20% Similarity=0.174 Sum_probs=107.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChh-h--------hhhhhH
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE-R--------FRAITS 79 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~--------~~~~~~ 79 (222)
-+..+|+|+|++|||||||+|+|++..+... ..+..+.......+..++ ..+.+|||||.. . +.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 3556899999999999999999999876432 223233333333344444 578999999986 2 233445
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQ 158 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 158 (222)
.++..+|++++|+|+++ -+ ....|+.. .....+.|+++|+||+|+........+....+....++ .++++||++
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~--~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WT--PDDEMVLN--KLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CC--HHHHHHHH--HHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC-CC--HHHHHHHH--HHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 67889999999999977 22 22223322 12234589999999999875222223344555555665 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQI 173 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i 173 (222)
|.|+.++++.+.+.+
T Consensus 159 g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 159 GLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999887643
No 150
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=5.7e-22 Score=168.42 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=99.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHhhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE--------RFRAITSSYY 82 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~ 82 (222)
.++|+|+|.+|||||||+|+|.+..+... ..+..+.+.....+...+ ..+.+|||||.+ .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 36899999999999999999998775422 223333333333333333 578999999985 5666778899
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccccCCC
Q 027503 83 RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQNLN 161 (222)
Q Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 161 (222)
..+|++|+|+|+.++.+..+. .+...+. ..++|+++|+||+|+..... ....+. ..++ +++++||.+|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~-~~~~~l~---~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE-EVAKILY---RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH-HHHHHHT---TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCC
Confidence 999999999999987665442 2222232 34589999999999865321 111222 3454 789999999999
Q ss_pred HHHHHHHHHHHHH
Q 027503 162 VEDAFLQMINQIH 174 (222)
Q Consensus 162 i~~~~~~l~~~i~ 174 (222)
+.++++++.+.+.
T Consensus 152 v~~L~~~i~~~l~ 164 (436)
T 2hjg_A 152 LGDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHHTGG
T ss_pred hHHHHHHHHHhcC
Confidence 9999999987764
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.84 E-value=2e-20 Score=158.81 Aligned_cols=155 Identities=18% Similarity=0.132 Sum_probs=105.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcC-------------------------------CCCCCCCcceeeEEEEEEE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEF-------------------------------RLDSKPTIGVEFAYRNIRV 56 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 56 (222)
+....++|+++|++++|||||+++|+.... .....+..+.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345679999999999999999999964321 1111234455555555555
Q ss_pred CCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHHHcCCCCe-EEEEEeCCCC
Q 027503 57 GDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRAT---FE---NTKKWLRELREFCSSCMA-IVLVGNKSDL 129 (222)
Q Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl 129 (222)
++ ..+.||||||++.|...+...+..+|++|+|+|++++.. |+ .....+..+.. .++| +++++||+|+
T Consensus 93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD 167 (439)
T ss_pred CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence 54 589999999999999999999999999999999998632 11 12222222222 2366 8999999998
Q ss_pred CCCCC------CCHHHHHHHHHHcC------CeEEEEccccCCCHHHHHH
Q 027503 130 THSRE------VNEEEGKILAETEG------LYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 130 ~~~~~------~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~ 167 (222)
..... ...++...+....+ ++++++||++|.|+.++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 54211 11122333444433 5799999999999999765
No 152
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=1.4e-20 Score=148.42 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=105.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCC--cceeeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPT--IGVEFAYRNIRVGDKLIKAQIWDTAGQ--------ERFRAIT 78 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~ 78 (222)
....++|+|+|.+|||||||+|+|++..+.....++ .+.......+..++ ..+.+|||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 356899999999999999999999998866544333 33344445555665 56899999995 2232222
Q ss_pred Hhh----hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc---CCCCeEEEEEeCCCCCCCCCC------CHHHHHHHHH
Q 027503 79 SSY----YRGALGALLVYDITRRATFENTKKWLRELREFC---SSCMAIVLVGNKSDLTHSREV------NEEEGKILAE 145 (222)
Q Consensus 79 ~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~ 145 (222)
... .+.+|++|+|+|+++... .. ..++..+.... ..+.|++||+||.|+.+.... ..+..+.+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~-~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTA-QD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCH-HH-HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCH-HH-HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 233 389999999999985321 11 22333333332 225899999999999653210 0133566777
Q ss_pred HcCCeEEEEcccc-----CCCHHHHHHHHHHHHHH
Q 027503 146 TEGLYFMETSAMQ-----NLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 146 ~~~~~~~~~Sa~~-----~~gi~~~~~~l~~~i~~ 175 (222)
..+..++.+++.. +.|+.++++.+.+.+.+
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 7787777776554 57899999888777665
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.9e-21 Score=144.89 Aligned_cols=118 Identities=22% Similarity=0.389 Sum_probs=88.5
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcC
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD---SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRG 84 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (222)
...+.++|+|+|++|||||||+++|.+..+... ..++.+.++ ....+.+|||||.+.+...+..++..
T Consensus 44 ~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~ 114 (193)
T 2ged_A 44 GGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT 114 (193)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHh
Confidence 345789999999999999999999999876431 222222211 33578999999999887777777765
Q ss_pred ----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHH----cCCCCeEEEEEeCCCCCCCCC
Q 027503 85 ----ALGALLVYDIT-RRATFENTKKWLRELREF----CSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 85 ----~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
+|++|+|||++ +..++..+..|+..+... ...++|+++|+||+|+.+...
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 889999888888776544 234699999999999976443
No 154
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.2e-21 Score=162.51 Aligned_cols=162 Identities=15% Similarity=0.226 Sum_probs=90.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCC--------CCcceeeEEEEEEECCeEEEEEEEeCCCh-------hh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFR-LDSK--------PTIGVEFAYRNIRVGDKLIKAQIWDTAGQ-------ER 73 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~ 73 (222)
...++|+|+|++|+|||||+++|++.... .... ++.+.......+...+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45789999999999999999998765432 2221 33333433344455666778999999998 66
Q ss_pred hhhhhH-------hhhcCCc-------------EEEEEEeCCChhhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503 74 FRAITS-------SYYRGAL-------------GALLVYDITRRATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHS 132 (222)
Q Consensus 74 ~~~~~~-------~~~~~~d-------------~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 132 (222)
+..++. .++..++ +++++++.. ..++..+. .|+..+ ..++|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 666665 5555433 444444431 33444433 233333 345899999999999765
Q ss_pred CCCCH--HHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHHhh
Q 027503 133 REVNE--EEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQTT 177 (222)
Q Consensus 133 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~ 177 (222)
+.+.. +.+..++...+++++++||+++.+ ++.|.++.+.+.+..
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 44433 355666667789999999999999 888988888886543
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=9.3e-23 Score=175.92 Aligned_cols=159 Identities=17% Similarity=0.133 Sum_probs=115.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
++.++|+++|++++|||||+++|.+..+.....++.+.++....+..++. ..+.||||||++.|..++..++..+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 45789999999999999999999987766555566666555444444221 36899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHH---HHHc--CCeEEEEccccCCCH
Q 027503 90 LVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE--VNEEEGKIL---AETE--GLYFMETSAMQNLNV 162 (222)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi 162 (222)
+|+|++++....... .+......++|++|++||+|+.+... +..+. ..+ ...+ .++++++||++|.|+
T Consensus 81 LVVDa~dg~~~qt~e----~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l-~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 81 LVVAADDGVMKQTVE----SIQHAKDAHVPIVLAINKCDKAEADPEKVKKEL-LAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp EECBSSSCCCHHHHH----HHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHH-HHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEEECCCCccHHHHH----HHHHHHHcCCcEEEEEecccccccchHHHHHHH-HhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 999999865443322 22333344589999999999975321 11111 111 1111 257999999999999
Q ss_pred HHHHHHHHHHHH
Q 027503 163 EDAFLQMINQIH 174 (222)
Q Consensus 163 ~~~~~~l~~~i~ 174 (222)
+++|+++...+.
T Consensus 156 ~eLle~I~~l~~ 167 (537)
T 3izy_P 156 MALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhHHHHHHHhhh
Confidence 999999887653
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.83 E-value=1.9e-20 Score=160.96 Aligned_cols=151 Identities=18% Similarity=0.113 Sum_probs=98.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcC-------------------------------CCCCCCCcceeeEEEEEEECCe
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEF-------------------------------RLDSKPTIGVEFAYRNIRVGDK 59 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 59 (222)
..+||+++|++++|||||+++|+.... .....+..+.+.....+...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC--
Confidence 569999999999999999999975411 11112233334444444443
Q ss_pred EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHH------HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503 60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFEN------TKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133 (222)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 133 (222)
...+.||||||++.|...+..++..+|++|+|+|++++.++.. ....+..+.. ... .|++||+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~-~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI-HNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC-CCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC-CcEEEEEECcCcccch
Confidence 3678999999999999999999999999999999998754322 1112222222 221 4699999999997633
Q ss_pred CCCHHHH----HHHHHHc-----CCeEEEEccccCCCHHHH
Q 027503 134 EVNEEEG----KILAETE-----GLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 134 ~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~gi~~~ 165 (222)
....++. ..+.... +++++++||++|.|+.++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 3222222 2233322 468999999999999853
No 157
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.83 E-value=2.5e-20 Score=154.14 Aligned_cols=125 Identities=15% Similarity=0.191 Sum_probs=94.3
Q ss_pred EEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHHc-CCCCeE
Q 027503 52 RNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITR----------RATFENTKKWLRELREFC-SSCMAI 120 (222)
Q Consensus 52 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ 120 (222)
..+.+++ +.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..++|+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 3455554 789999999999999999999999999999999999 678998888888876542 245999
Q ss_pred EEEEeCCCCCCCC----------------CCCHHHHHHHHH-----------HcCCeEEEEccccCCCHHHHHHHHHHHH
Q 027503 121 VLVGNKSDLTHSR----------------EVNEEEGKILAE-----------TEGLYFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 121 ivv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
+||+||+|+.+++ .++.+++..++. ..++.++++||+++.||+++|+++.+.+
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 9999999985322 256677777652 3457899999999999999999999988
Q ss_pred HHhhh
Q 027503 174 HQTTI 178 (222)
Q Consensus 174 ~~~~~ 178 (222)
.+...
T Consensus 352 ~~~~l 356 (362)
T 1zcb_A 352 LHDNL 356 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=4.6e-20 Score=156.56 Aligned_cols=155 Identities=23% Similarity=0.216 Sum_probs=105.6
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCC--CC----------CC---------------------CCcceeeEEEEE
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFR--LD----------SK---------------------PTIGVEFAYRNI 54 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~--~~----------~~---------------------~~~~~~~~~~~~ 54 (222)
.....++|+++|++++|||||+++|++.... .. .. ...+.+.....+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 3356799999999999999999999865311 00 00 111222222333
Q ss_pred EECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 55 RVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 55 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
...+ ..+.+|||||++.|...+..++..+|++|+|+|++++.. .....|+..+.... -.|+++|+||+|+.+...
T Consensus 100 ~~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~ 174 (434)
T 1zun_B 100 STAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDE 174 (434)
T ss_dssp ECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCH
T ss_pred ecCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccH
Confidence 3333 578999999999998888889999999999999998643 22344444443332 136899999999975321
Q ss_pred --C--CHHHHHHHHHHcC-----CeEEEEccccCCCHHHHHH
Q 027503 135 --V--NEEEGKILAETEG-----LYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 135 --~--~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~ 167 (222)
+ ..++...++...+ ++++++||++|.|+.++++
T Consensus 175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1 1233455666666 6799999999999988543
No 159
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=1.3e-19 Score=158.51 Aligned_cols=157 Identities=20% Similarity=0.161 Sum_probs=105.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEEC----------------CeEEEEEEEeCCChhhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVG----------------DKLIKAQIWDTAGQERF 74 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~ 74 (222)
+.++|+|+|++++|||||+++|.+..+........+.+......... .....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 56899999999999999999998765533221111111111111110 01125899999999999
Q ss_pred hhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC-------------HH
Q 027503 75 RAITSSYYRGALGALLVYDITR---RATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN-------------EE 138 (222)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-------------~~ 138 (222)
..++...+..+|++|+|+|+++ +++++.+.. +.. .++|+++++||+|+....... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999999 556554332 222 348999999999996422110 00
Q ss_pred H----------HHHHHHHc---------------CCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 139 E----------GKILAETE---------------GLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 139 ~----------~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
. ........ .++++++||++|.|++++++++...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 01111111 237999999999999999999988664
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.81 E-value=1.9e-20 Score=157.66 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=102.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--------cCCCC---C----CCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD--------EFRLD---S----KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF 74 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~--------~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (222)
...++|+++|++++|||||+++|.+. .+... . ....+.++......++.....+.+|||||++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45799999999999999999999873 11110 0 001222222233334333357899999999999
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC--
Q 027503 75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREV---NEEEGKILAETEG-- 148 (222)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 148 (222)
...+..++..+|++|+|+|++++... ....|+..+... ++| +++++||+|+.+.... ..++...+....+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 88888999999999999999987543 335555555443 478 8899999999742211 1123445555554
Q ss_pred ---CeEEEEccccCCC
Q 027503 149 ---LYFMETSAMQNLN 161 (222)
Q Consensus 149 ---~~~~~~Sa~~~~g 161 (222)
++++++||++|.|
T Consensus 165 ~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 165 GDEVPVIRGSALLALE 180 (405)
T ss_dssp TTTSCEEECCHHHHHH
T ss_pred ccCCCEEEccHHHhhh
Confidence 6899999999987
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=1.1e-20 Score=161.41 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=100.0
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCC--------hhhhhhhhH
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAG--------QERFRAITS 79 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~ 79 (222)
......+|+|+|.+|||||||+|+|.+..+... ..+.+.+..............+.+||||| ++.+...+.
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 345578999999999999999999998776422 23334444444444444446889999999 667778888
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcccc
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGL-YFMETSAMQ 158 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 158 (222)
.++..+|++|+|+|..++.+..+ .|+..+. ...++|+++|+||+|+.+.. ....++. ..++ .++++||.+
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l--~~~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~ 168 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAAD--EEVAKIL--YRTKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTH 168 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHH--HHHHHHH--TTCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTT
T ss_pred hhHhhCCEEEEEEeCCCCCChHH--HHHHHHH--HHcCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccc
Confidence 99999999999999887543332 2322222 22458999999999986421 1111111 2232 467999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027503 159 NLNVEDAFLQMINQI 173 (222)
Q Consensus 159 ~~gi~~~~~~l~~~i 173 (222)
|.|+.++++.+.+.+
T Consensus 169 g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHF 183 (456)
T ss_dssp CTTHHHHHHHHHTTG
T ss_pred ccchHHHHHHHHhhc
Confidence 999999999987654
No 162
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=5e-20 Score=150.44 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=94.8
Q ss_pred EEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHHc-CCCCeEEEEEeCCC
Q 027503 60 LIKAQIWDTAGQERFRAITSSYYRGALGALLVYDIT----------RRATFENTKKWLRELREFC-SSCMAIVLVGNKSD 128 (222)
Q Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D 128 (222)
.+.+.+||++|++.++.+|..++++++++|+|+|++ +..++.+...|+..+.... ..++|++|++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 378999999999999999999999999999999998 6778888888887776543 35699999999999
Q ss_pred CCCC---------------CCCCHHHHHHHHHH---------------------------cCCeEEEEccccCCCHHHHH
Q 027503 129 LTHS---------------REVNEEEGKILAET---------------------------EGLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 129 l~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~gi~~~~ 166 (222)
+.++ ...+.+++..+... +.+.++++||+++.+|+.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 8531 11245566554432 23778999999999999999
Q ss_pred HHHHHHHHH
Q 027503 167 LQMINQIHQ 175 (222)
Q Consensus 167 ~~l~~~i~~ 175 (222)
..+.+.+.+
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999987
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.81 E-value=9.8e-20 Score=157.46 Aligned_cols=116 Identities=19% Similarity=0.135 Sum_probs=84.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-------------C---------CCCCcceeeEEEEEEECCeEEEEEEEe
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRL-------------D---------SKPTIGVEFAYRNIRVGDKLIKAQIWD 67 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~-------------~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D 67 (222)
+...+|+|+|++|+|||||+++|+...... . ..+..+.......+...+ ..+.|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 457899999999999999999996211000 0 011223333344455554 6789999
Q ss_pred CCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|||+..+...+..+++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999997766665544 33332 3489999999999864
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.81 E-value=6.6e-20 Score=152.28 Aligned_cols=147 Identities=11% Similarity=0.082 Sum_probs=107.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEe
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYD 93 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 93 (222)
+|+++|++++|||||+++|+ ....+.+.....+..++ ..+.+|||||++.|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 12233333333344333 468999999999998878888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCCeE-EEEEe-CCCCCCCCCCCH--HHHHHHHHHc---CCeEEE--Ecccc---CCC
Q 027503 94 ITRRATFENTKKWLRELREFCSSCMAI-VLVGN-KSDLTHSREVNE--EEGKILAETE---GLYFME--TSAMQ---NLN 161 (222)
Q Consensus 94 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~g 161 (222)
+.. .+.....|+..+... ++|. ++++| |+|+ +...... ++.+.+.... .+++++ +||++ +.|
T Consensus 93 -~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 543 344555566555544 3677 88899 9998 4322211 3344444433 368999 99999 999
Q ss_pred HHHHHHHHHHHHHHh
Q 027503 162 VEDAFLQMINQIHQT 176 (222)
Q Consensus 162 i~~~~~~l~~~i~~~ 176 (222)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998887654
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.81 E-value=8.1e-20 Score=153.39 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=106.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCc-------CCCC-------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDE-------FRLD-------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA 76 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 76 (222)
..++|+++|++++|||||+++|.+.. +... .....+.+.......+......+.+|||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998741 1000 000122222222333333335789999999999988
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC----
Q 027503 77 ITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREV---NEEEGKILAETEG---- 148 (222)
Q Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~---- 148 (222)
.+..++..+|++|+|+|++++...+. ..++..+... ++| +++++||+|+.+.... ..++...+....+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88889999999999999998643333 2333333332 478 6899999998742211 1234455666655
Q ss_pred -CeEEEEccccCCC----------HHHHHHHHHHHH
Q 027503 149 -LYFMETSAMQNLN----------VEDAFLQMINQI 173 (222)
Q Consensus 149 -~~~~~~Sa~~~~g----------i~~~~~~l~~~i 173 (222)
++++++||++|.+ +.++++.+.+.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 777776665543
No 166
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.81 E-value=3e-19 Score=148.91 Aligned_cols=125 Identities=14% Similarity=0.206 Sum_probs=99.8
Q ss_pred EEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHHc-CCCCeE
Q 027503 52 RNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITR----------RATFENTKKWLRELREFC-SSCMAI 120 (222)
Q Consensus 52 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ 120 (222)
..+.+++ +.+.+|||+|++.++.+|..++++++++|+|||+++ ..++.++..|+..+.... ..++|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 3455554 789999999999999999999999999999999999 889999999998887653 356899
Q ss_pred EEEEeCCCCCCCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEccc
Q 027503 121 VLVGNKSDLTHSRE---V---------------------------NEEEGKILA-----ET--------EGLYFMETSAM 157 (222)
Q Consensus 121 ivv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~ 157 (222)
+||+||+|+.+.+. + ..+.+..|+ .. .++.++++||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999853221 1 134555553 22 24678899999
Q ss_pred cCCCHHHHHHHHHHHHHHhhh
Q 027503 158 QNLNVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 158 ~~~gi~~~~~~l~~~i~~~~~ 178 (222)
++.||+++|.++.+.+.....
T Consensus 368 d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999888876554
No 167
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.81 E-value=1.2e-20 Score=160.12 Aligned_cols=155 Identities=18% Similarity=0.195 Sum_probs=103.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCC-----------------------------CCCCcceeeEEEEEEECC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD--EFRLD-----------------------------SKPTIGVEFAYRNIRVGD 58 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 58 (222)
...++|+++|++++|||||+++|+.. .+... ..+..+.+.....+...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 35789999999999999999999864 22110 01223333333333333
Q ss_pred eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH----cCCCC-eEEEEEeCCCCCCCC
Q 027503 59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF----CSSCM-AIVLVGNKSDLTHSR 133 (222)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~-p~ivv~nK~Dl~~~~ 133 (222)
...+.+|||||++.|...+..++..+|++|+|+|+++ .+|+.+..|.....++ ...++ |++|++||+|+.+..
T Consensus 83 -~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 83 -KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp -SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred -CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 3579999999999999989999999999999999998 6676544333222111 11223 688999999997521
Q ss_pred ------CCCHHHHHHHHHHcC-----CeEEEEccccCCCHHHHHH
Q 027503 134 ------EVNEEEGKILAETEG-----LYFMETSAMQNLNVEDAFL 167 (222)
Q Consensus 134 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~ 167 (222)
....++...++...+ ++++++||++|.|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 111234556666655 6799999999999986654
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=2.4e-20 Score=150.69 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=103.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------CCC----------------------ccee-----------
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------KPT----------------------IGVE----------- 48 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~----------------------~~~~----------- 48 (222)
.....++|+|+|.+|||||||+|+|++..+.+.. .|+ .+.+
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 4456789999999999999999999998874221 121 0000
Q ss_pred ----------e--EEEEEEECCeEEEEEEEeCCChh-------------hhhhhhHhhhcCCcEEE-EEEeCCChhhHHH
Q 027503 49 ----------F--AYRNIRVGDKLIKAQIWDTAGQE-------------RFRAITSSYYRGALGAL-LVYDITRRATFEN 102 (222)
Q Consensus 49 ----------~--~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~ 102 (222)
. ....+...+ ...+.||||||.. .+..+...++..++.+| +|+|+++..+...
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~ 180 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH
T ss_pred HhcccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH
Confidence 0 000011110 2478999999953 34567778888888776 6999987644333
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH--cC-CeEEEEccccCCCHHHHHHHHHH
Q 027503 103 TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAET--EG-LYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 103 ~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
...|+.. ....+.|+++|+||+|+.+......+........ .+ .+++++||++|.|++++|+++.+
T Consensus 181 ~~~~~~~---~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 181 ALKIAKE---VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHHH---HCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHHH---hCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 3233333 3345689999999999976443222222110001 12 36889999999999999998877
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.80 E-value=2.4e-20 Score=159.54 Aligned_cols=155 Identities=18% Similarity=0.118 Sum_probs=91.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--cCCC-----------------------------CCCCCcceeeEEEEEEECC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD--EFRL-----------------------------DSKPTIGVEFAYRNIRVGD 58 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 58 (222)
...++|+++|++++|||||+++|+.. .+.. ......+++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999999742 1110 0011222232223344444
Q ss_pred eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCC
Q 027503 59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSRE 134 (222)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~ 134 (222)
..+.||||||++.|...+...+..+|++|+|+|++++. +|+....|...+......++| ++|++||+|+.+...
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 57899999999999988888999999999999999863 333222232222222223477 899999999964211
Q ss_pred ------CCHHHHHHHHHHc-------CCeEEEEccccCCCHHHHH
Q 027503 135 ------VNEEEGKILAETE-------GLYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 135 ------~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~ 166 (222)
....+...+.... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1112344555554 4679999999999998866
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=7.2e-20 Score=160.88 Aligned_cols=154 Identities=17% Similarity=0.104 Sum_probs=102.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-------------------------------CCCcceeeEEEEEEECC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-------------------------------KPTIGVEFAYRNIRVGD 58 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 58 (222)
...++|+++|++++|||||+++|++....... .+.++.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34789999999999999999999865322111 12333444444444444
Q ss_pred eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhh---HHHHHHHHHHHHHHcCCC-CeEEEEEeCCCCCCCCC
Q 027503 59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRAT---FENTKKWLRELREFCSSC-MAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~-~p~ivv~nK~Dl~~~~~ 134 (222)
..+.||||||++.|...+..++..+|++|+|+|++++.. +.....+...+......+ .|++||+||+|+.+...
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 578999999999999999999999999999999987531 101111222222222222 45899999999976322
Q ss_pred CCHH----HHHHHHHHc-----CCeEEEEccccCCCHHHH
Q 027503 135 VNEE----EGKILAETE-----GLYFMETSAMQNLNVEDA 165 (222)
Q Consensus 135 ~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~gi~~~ 165 (222)
...+ ....+.... +++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2222 223333333 368999999999999876
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.80 E-value=1.4e-21 Score=167.36 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=107.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEE
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAL 89 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (222)
.+.++|+++|++++|||||+++|.+..+.....++.+.+.....+..++ ..+.||||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999987665444434444443333333344 36899999999999999999999999999
Q ss_pred EEEeCCCh---hhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC--CCCHHH--HHHHHHHcC--CeEEEEccccCC
Q 027503 90 LVYDITRR---ATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR--EVNEEE--GKILAETEG--LYFMETSAMQNL 160 (222)
Q Consensus 90 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~~--~~~~~~Sa~~~~ 160 (222)
+|+|++++ ++.+.+ ..+. ..++|+++++||+|+.+.. .+..+. ...++..++ ++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99999884 333322 2222 2348999999999996421 111110 000112222 689999999999
Q ss_pred CHHHHHHHHHH
Q 027503 161 NVEDAFLQMIN 171 (222)
Q Consensus 161 gi~~~~~~l~~ 171 (222)
|++++|+++..
T Consensus 153 gI~eLle~I~~ 163 (501)
T 1zo1_I 153 GIDELLDAILL 163 (501)
T ss_dssp TCTTHHHHTTT
T ss_pred Ccchhhhhhhh
Confidence 99999998764
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=3.2e-19 Score=163.30 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=106.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCc-------CCCC-------CCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDE-------FRLD-------SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF 74 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (222)
....++|+++|++++|||||+++|.+.. +... ...+.++++....+.++.....+.||||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3467999999999999999999998631 0000 0112222222222333334467899999999999
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC--
Q 027503 75 RAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSREV---NEEEGKILAETEG-- 148 (222)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 148 (222)
.......+..+|++|+|+|++++... ....|+..+... ++| ++|++||+|+.+.... ..++...+....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888899999999999999986432 334455555443 378 7899999999752211 1234455666555
Q ss_pred ---CeEEEEccccC--------CCHHHHHHHHHHH
Q 027503 149 ---LYFMETSAMQN--------LNVEDAFLQMINQ 172 (222)
Q Consensus 149 ---~~~~~~Sa~~~--------~gi~~~~~~l~~~ 172 (222)
++++++||++| .|+.++++.|.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 68999999999 3577777666553
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=1.1e-18 Score=133.78 Aligned_cols=156 Identities=16% Similarity=0.177 Sum_probs=99.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhhhH
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE----------RFRAITS 79 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 79 (222)
....+|+|+|++|||||||+++|.+..+.....++.+.......+.+++ .+.+|||||.. .+.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4567999999999999999999998764333345555444434444433 46899999973 2333333
Q ss_pred hhh---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC--Ce
Q 027503 80 SYY---RGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEGKILAETEG--LY 150 (222)
Q Consensus 80 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~ 150 (222)
.++ ..++++++++|+.++.++.. +..|+ .. .++|+++|+||+|+...... ....+..++...+ +.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 444 57899999999998755432 22232 22 34899999999998653211 1234445555544 56
Q ss_pred EEEEccccCCCHHHHHHHHHHHHH
Q 027503 151 FMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 151 ~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
++++|++++.|++++++.|.+.+.
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC
T ss_pred eEEEeecCCCCHHHHHHHHHHHHh
Confidence 899999999999999998877653
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.78 E-value=3.6e-18 Score=135.71 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=87.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhc-----
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYR----- 83 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----- 83 (222)
...++|+|+|.+|+|||||+++|++..+.. ...+..+.......+..++ ..+.+|||||++.+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 367999999999999999999999987532 2233334445555566666 47899999998776554443332
Q ss_pred ----CCcEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCC--CeEEEEEeCCCCCCCCCC
Q 027503 84 ----GALGALLVYDITRRATFEN-TKKWLRELREFCSSC--MAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 84 ----~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~--~p~ivv~nK~Dl~~~~~~ 135 (222)
.+|++++|++++... +.. ...|+..+....... .|+++|+||+|+...+..
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 169 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL 169 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence 789999999998754 333 245777776654432 499999999999654433
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.77 E-value=2.3e-19 Score=153.14 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=102.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCC-----------------------------CCCCcceeeEEEEEEECC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD--EFRLD-----------------------------SKPTIGVEFAYRNIRVGD 58 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 58 (222)
...++|+++|++++|||||+++|++. .+... .....+.+.....+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 36799999999999999999999864 11100 012223333333444443
Q ss_pred eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHHcCCCCe-EEEEEeCCCCCC
Q 027503 59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TFE---NTKKWLRELREFCSSCMA-IVLVGNKSDLTH 131 (222)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~ 131 (222)
..+.||||||++.|...+..++..+|++|+|+|++++. +|+ ....++..+.. .++| ++||+||+|+.+
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 57999999999999988999999999999999999763 221 22223332322 2355 899999999973
Q ss_pred CCC----CCHHHHHHHHHHcC-----CeEEEEccccCCCHHHH
Q 027503 132 SRE----VNEEEGKILAETEG-----LYFMETSAMQNLNVEDA 165 (222)
Q Consensus 132 ~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~ 165 (222)
... ...++...++...+ ++++++||++|.|+.+.
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 211 11123445555554 68999999999999754
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.77 E-value=4.1e-18 Score=151.96 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=110.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcce------------ee----------------------------
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGV------------EF---------------------------- 49 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~------------~~---------------------------- 49 (222)
..++|+|+|.+|+|||||+|+|++..+.+.. .|+... ..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4689999999999999999999998764433 233210 00
Q ss_pred -------------EEEEEEECCeE--EEEEEEeCCChhh---hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 027503 50 -------------AYRNIRVGDKL--IKAQIWDTAGQER---FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELR 111 (222)
Q Consensus 50 -------------~~~~~~~~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~ 111 (222)
....+...... ..+.||||||... ....+..+++.+|++|+|+|++++.+..+...|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00001111000 2589999999665 34566788899999999999998877777665544443
Q ss_pred HHcCCCCeEEEEEeCCCCCCCCCCCHH---H-------HHH-----HHHH--------cCCeEEEEccc-----------
Q 027503 112 EFCSSCMAIVLVGNKSDLTHSREVNEE---E-------GKI-----LAET--------EGLYFMETSAM----------- 157 (222)
Q Consensus 112 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~-------~~~-----~~~~--------~~~~~~~~Sa~----------- 157 (222)
..+.|+++|+||+|+.....++.+ . ... +... ...+++++||+
T Consensus 228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 235789999999998653311111 0 111 1111 12469999999
Q ss_pred ---cCCCHHHHHHHHHHHHHHhhh
Q 027503 158 ---QNLNVEDAFLQMINQIHQTTI 178 (222)
Q Consensus 158 ---~~~gi~~~~~~l~~~i~~~~~ 178 (222)
++.|+.++++.+.+.+...+.
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~~~~ 328 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTRERA 328 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred hhhhccCHHHHHHHHHHHHHHhHH
Confidence 999999999999988765543
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.76 E-value=5.3e-18 Score=150.62 Aligned_cols=116 Identities=12% Similarity=0.096 Sum_probs=82.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC------------------CCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSK------------------PTIGVEFAYRNIRVGDKLIKAQIWDTAG 70 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 70 (222)
.+...+|+|+|+.|+|||||+++|++........ ...+.......+... .+.+.+|||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence 4567899999999999999999998533211100 111222222333333 36889999999
Q ss_pred hhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 71 QERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
+..+...+..++..+|++++|+|+.+...... ..++..+... ++|+++|+||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence 99998889999999999999999987654333 3344444432 48999999999986
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=6.7e-19 Score=146.04 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=107.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCccee---eE-------------------------------------
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVE---FA------------------------------------- 50 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~---~~------------------------------------- 50 (222)
...+|+|+|++|||||||+++|.+..+.+......+.. ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 45599999999999999999999987743332222100 00
Q ss_pred --------------EEEEEECCeEEEEEEEeCCChhhh-------------hhhhHhhhcCCcEEEEEEeCCChhhHHHH
Q 027503 51 --------------YRNIRVGDKLIKAQIWDTAGQERF-------------RAITSSYYRGALGALLVYDITRRATFENT 103 (222)
Q Consensus 51 --------------~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 103 (222)
...+.... ...+.+|||||...+ ..+...++.++|++|++++..+.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETT-SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEeCCC-CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 00011111 135899999997765 567788999999999999875433211
Q ss_pred HHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 104 KKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 104 ~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
..|+..+......+.|+++|+||+|+.+......+....+....+.+|+.+++.++.++.+.+..+..
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 34555556666667899999999999875554444444445556788999999999888876655433
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=1.6e-17 Score=148.10 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=88.1
Q ss_pred CCCCCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCc--C------CCC----------CCCCcceeeEEEEEEECCeEEE
Q 027503 1 MGDSYDEECDYLFKAVMIGDSAVGKSNLLSRFARDE--F------RLD----------SKPTIGVEFAYRNIRVGDKLIK 62 (222)
Q Consensus 1 ~~~~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~--~------~~~----------~~~~~~~~~~~~~~~~~~~~~~ 62 (222)
|+..-..+.+...+|+|+|++|+|||||+++|+... + ... .....++......+...+ ..
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~ 78 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HR 78 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eE
Confidence 444334455788999999999999999999998421 1 000 011122222233344444 67
Q ss_pred EEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 63 AQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
+.||||||+..|...+..++..+|++|+|+|++++..+.....|.. +.. .++|+++|+||+|+..
T Consensus 79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 8999999999999899999999999999999999877776655543 333 2489999999999864
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.75 E-value=4.7e-20 Score=161.62 Aligned_cols=150 Identities=22% Similarity=0.179 Sum_probs=81.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcC-------------------------------CCCCCCCcceeeEEEEEEEC
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEF-------------------------------RLDSKPTIGVEFAYRNIRVG 57 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 57 (222)
....++|+|+|++++|||||+++|+.... .....+.++.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 34678999999999999999999964210 01112233333333333333
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHHcCCCCe-EEEEEeCCCCC
Q 027503 58 DKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA---TF---ENTKKWLRELREFCSSCMA-IVLVGNKSDLT 130 (222)
Q Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~ 130 (222)
...+.||||||++.|...+...+..+|++|+|+|++++. .+ ......+..+... ++| ++||+||+|+.
T Consensus 254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence 367899999999999888888999999999999998642 11 1112222222222 355 88999999987
Q ss_pred CCCCCCH----HHHHHHH-HHcCC-----eEEEEccccCCCHH
Q 027503 131 HSREVNE----EEGKILA-ETEGL-----YFMETSAMQNLNVE 163 (222)
Q Consensus 131 ~~~~~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~ 163 (222)
+...... .....+. ...++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 5221111 1223333 33343 79999999999998
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=1.4e-17 Score=139.76 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=110.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhH---hhhcCCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER----FRAITS---SYYRGAL 86 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~---~~~~~~d 86 (222)
.|+|+|++|||||||++.|.+........+..+.......+..++ ...+.+||+||... +..+.. ..+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999988643222223333333334445443 23689999999642 112222 2345799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503 87 GALLVYDITRRATFENTKKWLRELREFCS--SCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
.+++++|++ ...+..+..|...+..+.. ...|.++|+||+|+... ...+.........+++++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999997 5566677777666655431 23789999999998653 222334444555678999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027503 165 AFLQMINQIHQTT 177 (222)
Q Consensus 165 ~~~~l~~~i~~~~ 177 (222)
++++|.+.+.+..
T Consensus 315 L~~~i~~~l~~~~ 327 (416)
T 1udx_A 315 LKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887543
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.74 E-value=1.2e-17 Score=133.18 Aligned_cols=122 Identities=14% Similarity=0.096 Sum_probs=82.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH-------hh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS-KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITS-------SY 81 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~ 81 (222)
...++|+++|.+|+|||||+|+|++..+.... .+..+.......+...+ ..+.+|||||...+..+.. .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999988763222 22222333333444444 6789999999865542211 12
Q ss_pred --hcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHHcCCC--CeEEEEEeCCCCCCCCC
Q 027503 82 --YRGALGALLVYDITRRATFEN-TKKWLRELREFCSSC--MAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 82 --~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~--~p~ivv~nK~Dl~~~~~ 134 (222)
...+|++++|+|++.. ++.. ...|+..+......+ .|+++|+||+|+.....
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 3479999999998763 2332 245777776554332 69999999999975443
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=8.4e-19 Score=141.95 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=86.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC-cCCCCCC--------CCcceeeEEEEEEECCeEEEEEEEeCCCh-------h
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARD-EFRLDSK--------PTIGVEFAYRNIRVGDKLIKAQIWDTAGQ-------E 72 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~ 72 (222)
....++|+|+|+.|+|||||+++|.+. .++.... ++.........+...+....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 356789999999999999999998875 4433221 11111111122223444568999999997 4
Q ss_pred hhhhhhH-------hhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503 73 RFRAITS-------SYYRG-------------ALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132 (222)
Q Consensus 73 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 132 (222)
.+..+.. .++.. +++++++.+.+.. +++.+. ...+.... .+.|+++|+||.|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence 4444443 33332 3445555554321 233222 12333333 34799999999999754
Q ss_pred CCC--CHHHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503 133 REV--NEEEGKILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
+++ ..+.+..++..++++++++||+++ |++++|..+.+.+.+
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 332 235667888889999999999999 999999999888753
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.73 E-value=1.6e-17 Score=135.11 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=97.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcce-----eeEE--------------------------------
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV-----EFAY-------------------------------- 51 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~-----~~~~-------------------------------- 51 (222)
....++|+|+|.+|||||||+|+|++..+.+......+. ....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 345789999999999999999999998763222100000 0000
Q ss_pred ----------------------EEEEECCeEEEEEEEeCCChhh-------------hhhhhHhhhcCCcEEEEEEeCCC
Q 027503 52 ----------------------RNIRVGDKLIKAQIWDTAGQER-------------FRAITSSYYRGALGALLVYDITR 96 (222)
Q Consensus 52 ----------------------~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~ 96 (222)
..+... ....+.+|||||... +......++..+|++++|+|..+
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecC-CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 000111 113689999999643 45667788999999999999743
Q ss_pred hh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc---cc---CCCHHHHHHHH
Q 027503 97 RA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA---MQ---NLNVEDAFLQM 169 (222)
Q Consensus 97 ~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~gi~~~~~~l 169 (222)
.. .......+ +......+.|+++|+||+|+.+......+.........+..++++++ .+ +.|+.++++.+
T Consensus 180 ~~~~~~~~~~i---~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 180 TDLANSDALQL---AKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp SCSTTCSHHHH---HHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred cchhhhHHHHH---HHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 22 11111122 22333456899999999999764432222222100112245666554 45 78999999887
Q ss_pred HHHHHH
Q 027503 170 INQIHQ 175 (222)
Q Consensus 170 ~~~i~~ 175 (222)
.+.+..
T Consensus 257 ~~~~~~ 262 (315)
T 1jwy_B 257 ILYFKN 262 (315)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 776643
No 185
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.72 E-value=2.1e-16 Score=136.74 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=79.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------------------CCCccee--eEEEEEEECCeEEEEEEEe
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS--------------------KPTIGVE--FAYRNIRVGDKLIKAQIWD 67 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~~l~D 67 (222)
...++|+|+|++|+|||||+++|+........ ....+.+ .....+...+ ..+.|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 46789999999999999999999863211000 0011111 1222333444 6789999
Q ss_pred CCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|||+..|...+..++..+|++|+|+|++++..... ..++.. ....++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~---~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEV---TRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHH---HTTTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHH---HHHcCCCEEEEEcCcCCcc
Confidence 99999998888899999999999999998643222 222222 2334589999999999864
No 186
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=5.2e-18 Score=137.35 Aligned_cols=134 Identities=18% Similarity=0.132 Sum_probs=109.0
Q ss_pred HHHHHHhhCcCC-CCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHH
Q 027503 27 NLLSRFARDEFR-LDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRA-TFENTK 104 (222)
Q Consensus 27 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 104 (222)
+|+.++..+.|. ..+.||++..+. ..+..++ .+.+||+ ++++..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888888 788899985544 3332233 6899999 8899999999999999999999999987 788888
Q ss_pred HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEccccCCCHHHHHHHHHH
Q 027503 105 KWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEG--LYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 105 ~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
.|+..+.. .++|++||+||+|+.+.+.+ ++...++..++ ++++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99887765 35899999999999754332 44666777776 89999999999999999987754
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.71 E-value=4.8e-16 Score=138.76 Aligned_cols=121 Identities=16% Similarity=0.057 Sum_probs=84.5
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCc--CCCC-----------C-----CCCcceeeEEEEEEEC-----CeEEEE
Q 027503 7 EECDYLFKAVMIGDSAVGKSNLLSRFARDE--FRLD-----------S-----KPTIGVEFAYRNIRVG-----DKLIKA 63 (222)
Q Consensus 7 ~~~~~~~kI~llG~~~sGKSsli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~ 63 (222)
.+.+...+|+|+|+.|+|||||+++|+... +... . ....++......+.+. +..+.+
T Consensus 5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 5 TPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred CCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence 345678999999999999999999997531 1100 0 0111222222223322 233789
Q ss_pred EEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 64 QIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 64 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
.||||||+..|...+..++..+|++|+|+|+++.........|. .+. ..++|+++|+||+|+..
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QAN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHH---HcCCCEEEEEeCCCccc
Confidence 99999999999888999999999999999999876555444443 232 23489999999999864
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=139.63 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=81.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------CCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS--------KPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF------- 74 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------- 74 (222)
...++|+|+|++|||||||++.|.+..+.... .++.........+...+....+++||++|....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 46788999999999999999999987763221 111211111112222344457899999997543
Q ss_pred hh------------------hhHhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 75 RA------------------ITSSYYRGALGALLVYDITRR-ATFENTK-KWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 75 ~~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
.. +...++.++++.+++|..... .++..+. .|+..+. .++|+++|+||+|+...+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 11 112344455543344433321 2333332 4555543 2589999999999876544
Q ss_pred CCH--HHHHHHHHHcCCeEEEEccccCCCHHHHHHHHHH
Q 027503 135 VNE--EEGKILAETEGLYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 135 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
+.. ..+..++...+++++++|+.++.++.++|..+..
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 443 4566777788999999999999999988776654
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=2e-17 Score=138.50 Aligned_cols=85 Identities=22% Similarity=0.232 Sum_probs=47.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEE--EE-------------------ECC-eEEEEEEEeCCC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRN--IR-------------------VGD-KLIKAQIWDTAG 70 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~l~Dt~G 70 (222)
++|+|+|.+|||||||+|+|.+........|..+.+..... +. +++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987633233333333222221 11 122 246899999999
Q ss_pred hhh----hhhhhH---hhhcCCcEEEEEEeCCCh
Q 027503 71 QER----FRAITS---SYYRGALGALLVYDITRR 97 (222)
Q Consensus 71 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 97 (222)
... ...+.. .+++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222332 457899999999999875
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=4.6e-16 Score=138.72 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=84.9
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhC--cCCC-----------CC-----CCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFARD--EFRL-----------DS-----KPTIGVEFAYRNIRVGDKLIKAQIWDTA 69 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~~--~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (222)
+.+...+|+|+|++|+|||||+++|+.. .+.. .+ .+..+.......+...+ ..+.|||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence 3467899999999999999999999852 2110 00 11122222233444444 678999999
Q ss_pred ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|+..+...+..+++.+|++|+|+|++++.+......|.. +... ++|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 999998889999999999999999999877666555543 3332 489999999999864
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=6e-18 Score=139.93 Aligned_cols=159 Identities=17% Similarity=0.161 Sum_probs=96.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------CCCc----------------------c---------------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDS------KPTI----------------------G--------------- 46 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~------~~~~----------------------~--------------- 46 (222)
...++|+|+|.+|||||||+|+|.+..+.+.. .|+. +
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999998874222 1220 0
Q ss_pred ------eeeEEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhHhhhcCCcE-EEEEEeCCChhhHHHHHH
Q 027503 47 ------VEFAYRNIRVG-DKLIKAQIWDTAGQE-------------RFRAITSSYYRGALG-ALLVYDITRRATFENTKK 105 (222)
Q Consensus 47 ------~~~~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~ 105 (222)
+......+.+. .....+.||||||.. .+..+...++..++. +++|++.+....-. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---H
Confidence 00000011111 012468999999953 345566777766654 44556665432211 2
Q ss_pred HHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHH--HHHHcC-CeEEEEccccCCCHHHHHHHHHH
Q 027503 106 WLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI--LAETEG-LYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 106 ~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
|+..+......+.|+++|+||+|+.+........... +....+ .+++.+||+++.|+.++++++.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3334444555668999999999997643311111110 000122 35788999999999999988876
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.64 E-value=1.9e-16 Score=122.18 Aligned_cols=155 Identities=14% Similarity=0.053 Sum_probs=94.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCccee--------------eEEEEEEEC----------------CeE
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVE--------------FAYRNIRVG----------------DKL 60 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~----------------~~~ 60 (222)
...+|+|+|.+|||||||+++|...............+ .....+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45789999999999999999998753221110000000 001111110 012
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG 140 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (222)
..+.+|||+|.-.. ...+....+.+++|+|+.+.... ...+... . +.|+++|+||+|+.+......+..
T Consensus 109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 46789999884110 01111356889999998765321 1111111 1 278899999999864322345555
Q ss_pred HHHHHHc--CCeEEEEccccCCCHHHHHHHHHHHHHHh
Q 027503 141 KILAETE--GLYFMETSAMQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 141 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~ 176 (222)
..+.... +++++++||++|.|+.++|+++.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 5555543 47899999999999999999998877543
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.63 E-value=5e-15 Score=121.97 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=92.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhhhh-
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQERFR- 75 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~- 75 (222)
.++|+|+|.+|||||||+|+|.+..+.....|..+.+.....+.+++. +..+.+|||||.....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 378999999999999999999987744333333333322223444442 1478999999987542
Q ss_pred ---hh---hHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHH-----------------------------
Q 027503 76 ---AI---TSSYYRGALGALLVYDITRR----------ATFENTKKWLREL----------------------------- 110 (222)
Q Consensus 76 ---~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l----------------------------- 110 (222)
.+ ...+++.+|++++|+|+.+. +.+.++..+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 22 23457899999999999862 2233322211111
Q ss_pred -----------HH-------------------H-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcccc
Q 027503 111 -----------RE-------------------F-CSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSAMQ 158 (222)
Q Consensus 111 -----------~~-------------------~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (222)
.. + ....+|+++++|+.|..-......+..+.++...+.+++++||+.
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 00 0 112489999999998642222234556778888899999999764
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.61 E-value=6.7e-18 Score=130.86 Aligned_cols=154 Identities=13% Similarity=0.064 Sum_probs=90.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeE------------EEEEEEC-CeE-----------------
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFA------------YRNIRVG-DKL----------------- 60 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 60 (222)
..++|+|+|.+|||||||+++|....+...+.++...+.. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999987655433333332221 1111111 100
Q ss_pred --EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHH
Q 027503 61 --IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEE 138 (222)
Q Consensus 61 --~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 138 (222)
..+.++|++|.-.. ...+-...+..+.++|......... ..... . ..|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCchhHHHHH
Confidence 13444555542100 0011112344555666432211110 00011 1 2678999999998654334556
Q ss_pred HHHHHHHHc--CCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503 139 EGKILAETE--GLYFMETSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 139 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
....++... +++++++||++|.|+.++|+++.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 666666654 5789999999999999999999887754
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.61 E-value=5.3e-15 Score=128.51 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=82.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc------------------C----CCCCCCCcceeeEEEEEEECCeEEEEEEEe
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDE------------------F----RLDSKPTIGVEFAYRNIRVGDKLIKAQIWD 67 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 67 (222)
.+.-+|+|+|+.++|||||..+|+... + .......+++......+.+.+ ..+.|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 456789999999999999999986211 0 011122233333344455555 6789999
Q ss_pred CCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 68 TAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
|||+..|..-....++-+|++|+|+|+..+-......-| ..+..+ ++|.++++||+|...
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccchh
Confidence 999999999999999999999999999987654554445 333333 389999999999754
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.60 E-value=1e-15 Score=133.17 Aligned_cols=126 Identities=19% Similarity=0.219 Sum_probs=84.6
Q ss_pred CCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC---CCCCCCcceeeEEEE----------------------EEE--
Q 027503 4 SYDEECDYLFKAVMIGDSAVGKSNLLSRFARDEFR---LDSKPTIGVEFAYRN----------------------IRV-- 56 (222)
Q Consensus 4 ~~~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~~~-- 56 (222)
+.+.+.+..++|+|+|.+|+|||||+|+|++..+. ....++......... +..
T Consensus 57 l~~~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g 136 (550)
T 2qpt_A 57 LEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFG 136 (550)
T ss_dssp CCSTTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC-----------------
T ss_pred cccccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhc
Confidence 33455667899999999999999999999998864 222333211100000 000
Q ss_pred ----CCeE---------EEEEEEeCCChhh-----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH
Q 027503 57 ----GDKL---------IKAQIWDTAGQER-----------FRAITSSYYRGALGALLVYDITRRATFENTKKWLRELRE 112 (222)
Q Consensus 57 ----~~~~---------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~ 112 (222)
++.. ..+.||||||... +...+..++..+|++|+|+|+++.........|+..+.
T Consensus 137 ~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~- 215 (550)
T 2qpt_A 137 NTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR- 215 (550)
T ss_dssp -CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-
T ss_pred ccccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-
Confidence 0000 2588999999764 45667788999999999999987544444455555443
Q ss_pred HcCCCCeEEEEEeCCCCCCC
Q 027503 113 FCSSCMAIVLVGNKSDLTHS 132 (222)
Q Consensus 113 ~~~~~~p~ivv~nK~Dl~~~ 132 (222)
..+.|+++|+||+|+...
T Consensus 216 --~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 216 --GHEDKIRVVLNKADMVET 233 (550)
T ss_dssp --TCGGGEEEEEECGGGSCH
T ss_pred --hcCCCEEEEEECCCccCH
Confidence 334899999999998753
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.60 E-value=7e-16 Score=127.61 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=69.6
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG 140 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (222)
+.+.||||||... .....+..+|++++|+|....+.+..+.. .....|+++|+||+|+...... ....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~-~~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEA-RLAA 239 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHH-HHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHH-HHHH
Confidence 5789999999432 23344589999999999876544322221 0112689999999998642221 1111
Q ss_pred HHHHHH----------cCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503 141 KILAET----------EGLYFMETSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 141 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
..+... ++.+++.+||++|.|+++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222221 25789999999999999999999888755
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.56 E-value=7.9e-15 Score=133.26 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=85.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCCCcceeeEE--EEEE------------ECC
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDEFRLD----------------SKPTIGVEFAY--RNIR------------VGD 58 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~----------------~~~~~~~~~~~--~~~~------------~~~ 58 (222)
.+...+|+|+|++++|||||+++|+....... ..+..++.... ..+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 35678999999999999999999986421100 01111221111 2222 133
Q ss_pred eEEEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 59 KLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
..+.+.||||||+..|...+..+++.+|++|+|+|++++.++.....|..... .++|+++|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 46789999999999999999999999999999999999888777665654332 348999999999986
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.55 E-value=2.4e-14 Score=118.46 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECC-------------------eEEEEEEEeCCChhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGD-------------------KLIKAQIWDTAGQER 73 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~ 73 (222)
++|+|+|.+|||||||+|+|.+........+..+.........+.+ .+..+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999998653222223222222222222221 235789999999765
Q ss_pred hh-------hhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHH--------------------------
Q 027503 74 FR-------AITSSYYRGALGALLVYDITRR----------ATFENTKKWLREL-------------------------- 110 (222)
Q Consensus 74 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l-------------------------- 110 (222)
.. ......++.+|++++|+|+.+. ..+.++..+...+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 32 1233457899999999999851 1122211110000
Q ss_pred ---------H----H-------------------Hc-CCCCeEEEEEeCCCC--CCC-CCCCHHHHHHHHHHcCCeEEEE
Q 027503 111 ---------R----E-------------------FC-SSCMAIVLVGNKSDL--THS-REVNEEEGKILAETEGLYFMET 154 (222)
Q Consensus 111 ---------~----~-------------------~~-~~~~p~ivv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~ 154 (222)
. . +. ...+|+++++||.|. .+. +....+..+.++...+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 0 0 00 123799999999973 221 1233456677888888999999
Q ss_pred ccccCCCHHHHHHH
Q 027503 155 SAMQNLNVEDAFLQ 168 (222)
Q Consensus 155 Sa~~~~gi~~~~~~ 168 (222)
||+.+.++.++.+.
T Consensus 242 SAk~E~el~eL~~~ 255 (368)
T 2dby_A 242 SARLEAELAELSGE 255 (368)
T ss_dssp CHHHHHHHHTSCHH
T ss_pred echhHHHHHHhchH
Confidence 99987777665543
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.5e-13 Score=113.73 Aligned_cols=157 Identities=16% Similarity=0.089 Sum_probs=105.9
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhh
Q 027503 6 DEECDYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERF-------RAIT 78 (222)
Q Consensus 6 ~~~~~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~ 78 (222)
+-.++...+|+|+|.||||||||+|+|.+........|..+.+.....+.+.+ ..+.++||||...- ....
T Consensus 66 ~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~ 143 (376)
T 4a9a_A 66 DVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQV 143 (376)
T ss_dssp TBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHH
T ss_pred eEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHH
Confidence 34566788999999999999999999998776666667788888888888888 56899999995421 1223
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCC--------CCCCCHHHHHHHHHHcC
Q 027503 79 SSYYRGALGALLVYDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTH--------SREVNEEEGKILAETEG 148 (222)
Q Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~ 148 (222)
...++.+|++++|+|+.+|.. +.......+.... -.+.|.++++||.|... ......++.+.+...+.
T Consensus 144 l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~ 221 (376)
T 4a9a_A 144 IAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR 221 (376)
T ss_dssp HHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT
T ss_pred HHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc
Confidence 456789999999999998742 2222223333322 23468888999999742 23345666666666655
Q ss_pred CeEEEEccccCCCHHHHH
Q 027503 149 LYFMETSAMQNLNVEDAF 166 (222)
Q Consensus 149 ~~~~~~Sa~~~~gi~~~~ 166 (222)
+.--++-...+...+++.
T Consensus 222 lt~kpv~~~~nv~eddl~ 239 (376)
T 4a9a_A 222 INSAEIAFRCDATVDDLI 239 (376)
T ss_dssp CCSEEEEECSCCCHHHHH
T ss_pred ccCCCeeecccCCHHHHH
Confidence 432223233444555544
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.51 E-value=5.5e-15 Score=121.88 Aligned_cols=102 Identities=12% Similarity=-0.014 Sum_probs=62.3
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG 140 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (222)
+.+.++||+|.... .......+|++++|+|+.++.....+.. .+ ...|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 46789999995321 2344678999999999987643222111 11 13688999999998532110 0111
Q ss_pred HHHHH----------HcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 141 KILAE----------TEGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 141 ~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
..+.. .++.+++.+||++|.|+++++++|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 22211 12457899999999999999999988764
No 202
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.50 E-value=6.8e-14 Score=124.69 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=98.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcce------------------------------------------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGV------------------------------------------ 47 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~------------------------------------------ 47 (222)
-..++|+|+|.+++|||||+|+|++..+.+......+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45779999999999999999999998763222111100
Q ss_pred -------e--eEEEEEEECCeEEEEEEEeCCChhh-------------hhhhhHhhh-cCCcEEEEEEeCCChhhHHHHH
Q 027503 48 -------E--FAYRNIRVGDKLIKAQIWDTAGQER-------------FRAITSSYY-RGALGALLVYDITRRATFENTK 104 (222)
Q Consensus 48 -------~--~~~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 104 (222)
. .....+...+. ..+.|+||||... +..+...++ ..+|++++|+|+++.....+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0 00111111111 2578999999433 233444554 5789999999998754333322
Q ss_pred HHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHH-H-HHHcC-CeEEEEccccCCCHHHHHHHHHH
Q 027503 105 KWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKI-L-AETEG-LYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 105 ~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
.+ +......+.|+++|+||+|+.+........... . ....+ .+++.+||++|.|++++++.+.+
T Consensus 208 ~l---l~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 208 KI---AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HH---HHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HH---HHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 22 333444568999999999998644432221110 0 00012 35788999999999999988876
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.47 E-value=2.6e-13 Score=107.23 Aligned_cols=111 Identities=14% Similarity=-0.077 Sum_probs=66.9
Q ss_pred EEEEEEeCCChhhhhhhhH------hhhcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRAITS------SYYRGALGALLVYDITRRATFENTKKWL-RELREFCSSCMAIVLVGNKSDLTHSR 133 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~ivv~nK~Dl~~~~ 133 (222)
+.+.+|||||......... ..+.. +++++++|.....+........ .........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4689999999876543221 23455 8888888875432222221111 11111112238999999999986532
Q ss_pred CCCHHHHHH----------------------------HHHHcC--CeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 134 EVNEEEGKI----------------------------LAETEG--LYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 134 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
.. +.... ++...+ .+++++||+++.|++++++++.+.+.
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 11 11111 022333 47999999999999999999987664
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.46 E-value=2.2e-14 Score=118.01 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=64.5
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCH--H
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNE--E 138 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~ 138 (222)
+.+.||||||...... .....+|++++|+|++.+..+..+.. .. . +.|.++|+||+|+.+...... +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~---~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL--M---EVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH--H---HHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h---cccCEEEEECCCCCChHHHHHHHH
Confidence 4789999999654332 24689999999999976543221111 11 1 267899999999864221111 0
Q ss_pred HHHHHHHHc-------CCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 139 EGKILAETE-------GLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 139 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
......... ..+++++||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111111 457899999999999999999988765
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.46 E-value=1.5e-14 Score=127.95 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=80.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc--CC----CCC----CCC------cceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDE--FR----LDS----KPT------IGVEFAYRNIRVGDKLIKAQIWDTAGQERFR 75 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~--~~----~~~----~~~------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (222)
.-||+|+|+.++|||||..+|+... .. ... ... .++++....+.+......+.|+||||+..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 3579999999999999999986311 10 000 000 1233333333333344678999999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 76 AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
......++-+|++|+|+|+..+-......-| ..+..+. +|.++++||+|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~~---lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKMG---IPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHHT---CSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHcC---CCeEEEEecccccc
Confidence 9999999999999999999987543443334 3344443 88899999999753
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.45 E-value=1.8e-12 Score=116.02 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=80.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC--------cCCC----------CCCCCcceeeEEEEEEEC-----CeEEEEEE
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARD--------EFRL----------DSKPTIGVEFAYRNIRVG-----DKLIKAQI 65 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~--------~~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~l 65 (222)
-+..-+|+|+|+.++|||||..+|+.. .... .....+++......+.+. ...+.+.|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 366788999999999999999998621 1110 111112222222233332 12468999
Q ss_pred EeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC
Q 027503 66 WDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT 130 (222)
Q Consensus 66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~ 130 (222)
+||||+..|..-....++-+|++|+|+|+..+-......-|.+... .. +|.++++||+|..
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-~~---lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-YG---VPRIVYVNKMDRQ 150 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-HT---CCEEEEEECSSST
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-cC---CCeEEEEcccccc
Confidence 9999999999999999999999999999998765454444544433 33 8999999999975
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.41 E-value=4.7e-13 Score=108.20 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=79.2
Q ss_pred hhhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHcC
Q 027503 71 QERFRAITSSYYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVN-EEEGKILAETEG 148 (222)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 148 (222)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .+....+....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5667778888999999999999999986 88888889887665 348999999999997543222 344456666778
Q ss_pred CeEEEEccccCCCHHHHHHHHHH
Q 027503 149 LYFMETSAMQNLNVEDAFLQMIN 171 (222)
Q Consensus 149 ~~~~~~Sa~~~~gi~~~~~~l~~ 171 (222)
++++++||++|.|++++++.+..
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHhhccC
Confidence 99999999999999999987643
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.36 E-value=2.3e-12 Score=105.65 Aligned_cols=103 Identities=11% Similarity=0.045 Sum_probs=63.3
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG 140 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (222)
..+.|+||+|...-. ......+|++++++|...+.....+.. .+.. .|.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~~-----~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GIFE-----LADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---THHH-----HCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH---HHhc-----cccEEEEEchhccCchhHHHHHH
Confidence 478999999965321 233578999999999865432211111 1111 35577789999754222222223
Q ss_pred HHHHHH----------cCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 141 KILAET----------EGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 141 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
+.+... ++.+++.+|+.++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333321 1457899999999999999998887654
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.29 E-value=1.1e-10 Score=97.17 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=64.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEF-RLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQER 73 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 73 (222)
....+|+|+|++|||||||+|.|.+... .....|+.+.+.....+.+.+. +..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457899999999999999999999776 4555566666655566666541 13579999999542
Q ss_pred -------hhhhhHhhhcCCcEEEEEEeCCC
Q 027503 74 -------FRAITSSYYRGALGALLVYDITR 96 (222)
Q Consensus 74 -------~~~~~~~~~~~~d~~i~v~d~~~ 96 (222)
+.......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23345566789999999999863
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.26 E-value=3.6e-12 Score=96.32 Aligned_cols=102 Identities=8% Similarity=-0.026 Sum_probs=69.0
Q ss_pred ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH----c-CCCCeEEEEEeCC-CCCCCCCCCHHHHHHH
Q 027503 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREF----C-SSCMAIVLVGNKS-DLTHSREVNEEEGKIL 143 (222)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~----~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~ 143 (222)
|++.++.+|..|+.++|++|||+|.+|.+.++ ....+..+... . ..+.|++|++||. |+. ...+..+..+.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e~ 187 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAHE 187 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHHH
Confidence 78889999999999999999999999875443 33333233221 1 1468999999996 664 34444444333
Q ss_pred HH----HcCCeEEEEccccCCCHHHHHHHHHHHHH
Q 027503 144 AE----TEGLYFMETSAMQNLNVEDAFLQMINQIH 174 (222)
Q Consensus 144 ~~----~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~ 174 (222)
.. .+.+.+..|||.+|+|+.+.++||.+.+.
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 21 24467999999999999999999987664
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.25 E-value=5.5e-12 Score=104.84 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=53.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCe---------------EEEEEEEeCCChhhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDK---------------LIKAQIWDTAGQERF 74 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 74 (222)
...++|+|+|.+|||||||+|+|.+..+.....|+.+.+.....+.+.+. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34678999999999999999999988765555555555555555555442 235899999997754
Q ss_pred hh-------hhHhhhcCCcEEEEEEeCCCh
Q 027503 75 RA-------ITSSYYRGALGALLVYDITRR 97 (222)
Q Consensus 75 ~~-------~~~~~~~~~d~~i~v~d~~~~ 97 (222)
.. .+..+++.+|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 32 456788999999999998754
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.14 E-value=7.5e-11 Score=93.29 Aligned_cols=104 Identities=7% Similarity=-0.065 Sum_probs=73.5
Q ss_pred CChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHH----HHHHHH-cCCCCeEEEEEeC-CCCCCCCCCCHHHHHH
Q 027503 69 AGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWL----RELREF-CSSCMAIVLVGNK-SDLTHSREVNEEEGKI 142 (222)
Q Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~----~~l~~~-~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~ 142 (222)
+|++..+.+|..|+.++|++|+|+|.+|.+.++ ....+ ..+.+. ...+.|++|++|| .|+. ...+..+..+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~e 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHHH
Confidence 467889999999999999999999999987543 22222 223222 1246899999997 5774 3444444433
Q ss_pred HHH----HcCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503 143 LAE----TEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 143 ~~~----~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
... .+...+..|||.+|+|+.+.++||.+.+..
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 221 234679999999999999999999987643
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=4.2e-11 Score=99.35 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC------cCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD------EFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFR--------AIT 78 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~ 78 (222)
.+|+++|.+|+|||||+|+|++. .......+.. +.....+.++. .+.++||||..... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT--TLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS--SCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe--EEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999976 2212222333 33333444443 36899999954221 111
Q ss_pred Hhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503 79 SSYY--RGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA 156 (222)
Q Consensus 79 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (222)
..++ ...++++++++......+..+.. +......+.|+++++||+|..+.... ......+.+..+..+...++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 2222 67799999998743211111110 22223456899999999998764332 33445566667766666665
Q ss_pred ccCCCH
Q 027503 157 MQNLNV 162 (222)
Q Consensus 157 ~~~~gi 162 (222)
.+..++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 554443
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.95 E-value=3.2e-09 Score=87.98 Aligned_cols=96 Identities=23% Similarity=0.268 Sum_probs=73.4
Q ss_pred ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 027503 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL----AE 145 (222)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~ 145 (222)
..+.|..+...+.+.+|++++|+|+.++. ..|...+.++.. +.|+++|+||+|+.... ...+....+ +.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45788899999999999999999999863 346566666544 48999999999997533 333333333 55
Q ss_pred HcCC---eEEEEccccCCCHHHHHHHHHHH
Q 027503 146 TEGL---YFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 146 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
..++ +++.+||++|.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999888654
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=3.1e-09 Score=89.15 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=59.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCC--CcceeeEEEE--EEECCeEEEEEEEeCCChhhh-------------
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKP--TIGVEFAYRN--IRVGDKLIKAQIWDTAGQERF------------- 74 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~l~Dt~G~~~~------------- 74 (222)
.++++|+|++|+|||||++.|.+..+...... ..+....... ....+....++++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 46799999999999999999998754322111 1111111111 222233347899999974311
Q ss_pred -----hhhhHhh---------hcCC--cE-EEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCC
Q 027503 75 -----RAITSSY---------YRGA--LG-ALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTH 131 (222)
Q Consensus 75 -----~~~~~~~---------~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~ 131 (222)
......+ ..++ |+ ++++.|...+-+..++ ..+.... .++|+|+|+||+|...
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di----eilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL----VTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH----HHHHHTC-SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH----HHHHHHh-hCCCEEEEEcchhccc
Confidence 0111111 1122 33 5556666544333332 2222222 5689999999999865
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.89 E-value=5.1e-11 Score=98.79 Aligned_cols=136 Identities=12% Similarity=0.156 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-----CCCCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----h----hH
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRL-----DSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRA----I----TS 79 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~----~~ 79 (222)
.+|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+.+. +.++||||...... + ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999999863211 01122223333334444432 78999999643221 1 11
Q ss_pred hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503 80 SY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILAETEGLYFMETSA 156 (222)
Q Consensus 80 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (222)
.+ ....+.++++++.........+. .+......+.|+++++||+|..+... .......+.+..+..+...++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSCH
T ss_pred HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCch
Confidence 11 35678888888874321111111 02222345689999999999876333 233444555666655544444
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.85 E-value=1.4e-09 Score=93.31 Aligned_cols=152 Identities=12% Similarity=0.066 Sum_probs=84.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHh------hCcCCC----CCCCCc-----------ceeeEEEEEE-------------
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFA------RDEFRL----DSKPTI-----------GVEFAYRNIR------------- 55 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~------~~~~~~----~~~~~~-----------~~~~~~~~~~------------- 55 (222)
.....|+|+|.+||||||+++.|. +..+.. .+.+.. ++.+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346689999999999999999988 332110 001100 0111110000
Q ss_pred ECCeEEEEEEEeCCChhhhh-hhhH---hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeE-EEEEeCCC
Q 027503 56 VGDKLIKAQIWDTAGQERFR-AITS---SY--YRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAI-VLVGNKSD 128 (222)
Q Consensus 56 ~~~~~~~~~l~Dt~G~~~~~-~~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D 128 (222)
.....+.+.|+||||..... .+.. .. ...+|.+++|+|+........ ....+... +|+ .+|+||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~~----~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKDK----VDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHHH----HCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHhh----cCceEEEEeCCc
Confidence 00012478999999965321 1111 11 237899999999987643211 22223322 564 78899999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeE------------------EEEccccCCC-HHHHHHHHHHH
Q 027503 129 LTHSREVNEEEGKILAETEGLYF------------------METSAMQNLN-VEDAFLQMINQ 172 (222)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~~~~~l~~~ 172 (222)
...... . +.......+.|+ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g--~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG--G--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT--H--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH--H--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 864221 1 222333444443 3368888998 98888888765
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.83 E-value=5.8e-09 Score=82.80 Aligned_cols=137 Identities=19% Similarity=0.221 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC------C-CcceeeEEEEEEE--CCeEEEEEEEeCCChhh-------hh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSK------P-TIGVEFAYRNIRV--GDKLIKAQIWDTAGQER-------FR 75 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~------~-~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~-------~~ 75 (222)
.++++|+|+.|+|||||+|.|.+...+.... + ..........+.. .+....++++|++|... +.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 6899999999999999999998754322110 0 0000001111111 12223679999998321 00
Q ss_pred h-----------h----------hHhhhcCCcEEEEEEeCC-ChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCC
Q 027503 76 A-----------I----------TSSYYRGALGALLVYDIT-RRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSR 133 (222)
Q Consensus 76 ~-----------~----------~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~ 133 (222)
. . ....+..+++.++++|.. .+-.-.+ ...+...... .++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccccCCHH
Confidence 0 0 011233468888888854 3322222 2223333333 8999999999987533
Q ss_pred CCCH--HHHHHHHHHcCCeEEE
Q 027503 134 EVNE--EEGKILAETEGLYFME 153 (222)
Q Consensus 134 ~~~~--~~~~~~~~~~~~~~~~ 153 (222)
+... ..........++.++.
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 2211 1122234455666553
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.79 E-value=1.2e-08 Score=84.63 Aligned_cols=97 Identities=21% Similarity=0.187 Sum_probs=71.6
Q ss_pred ChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 027503 70 GQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKIL----AE 145 (222)
Q Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~ 145 (222)
.++.|......++..++++++|+|+.++.+ .|...+..... +.|+++|+||+|+.... ...+....+ +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 478889999999999999999999999763 34444444443 48999999999997532 233333333 45
Q ss_pred HcCC---eEEEEccccCCCHHHHHHHHHHHH
Q 027503 146 TEGL---YFMETSAMQNLNVEDAFLQMINQI 173 (222)
Q Consensus 146 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~i 173 (222)
..+. .++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666 689999999999999998886543
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.69 E-value=4.6e-08 Score=78.08 Aligned_cols=101 Identities=11% Similarity=0.037 Sum_probs=69.5
Q ss_pred EEeCCChh-hhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 027503 65 IWDTAGQE-RFRAITSSYYRGALGALLVYDITRRATFE--NTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK 141 (222)
Q Consensus 65 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 141 (222)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..|+ .++|.++|+||+|+.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 34568865 44456677889999999999999987664 333332 3489999999999975211 12223
Q ss_pred HHHHHcCCeEEEEccccCCCHHHHHHHHHHHHHH
Q 027503 142 ILAETEGLYFMETSAMQNLNVEDAFLQMINQIHQ 175 (222)
Q Consensus 142 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~ 175 (222)
.+....+++++.+||.++.|+.++++.+.+.+.+
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 3444567899999999999999999888776654
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.63 E-value=7.7e-07 Score=74.55 Aligned_cols=158 Identities=11% Similarity=0.146 Sum_probs=82.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCc-ceee--EEEEEEECCeEEEEEEEeCCChhhhh----h-hhHhhhc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTI-GVEF--AYRNIRVGDKLIKAQIWDTAGQERFR----A-ITSSYYR 83 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~----~-~~~~~~~ 83 (222)
...++|+|++|||||||+|.+.+...+....-.. +.+. ........ ....++++|++|..... . +....+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999999843222111111 1110 01111111 11157899999854211 1 1122233
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCC-------CCCCCCHHH----HHHHH----HHcC
Q 027503 84 GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLT-------HSREVNEEE----GKILA----ETEG 148 (222)
Q Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~~~~~----~~~~ 148 (222)
..+.+++ ++...+.. ..+ .+...+.. .+.|+++|.||.|+. .-....... .+.+. ...+
T Consensus 148 ~~~~~~~-lS~G~~~k-qrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK-NDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCCH-HHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCccH-HHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455554 77653211 111 12222222 248999999999864 111112222 22332 1222
Q ss_pred ---CeEEEEcc--ccCCCHHHHHHHHHHHHHHh
Q 027503 149 ---LYFMETSA--MQNLNVEDAFLQMINQIHQT 176 (222)
Q Consensus 149 ---~~~~~~Sa--~~~~gi~~~~~~l~~~i~~~ 176 (222)
..++.+|+ .++.|++++.+.+.+.+-+.
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 35788999 55667999988887765433
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.47 E-value=1.3e-07 Score=75.42 Aligned_cols=58 Identities=29% Similarity=0.497 Sum_probs=36.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLD-SKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQE 72 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (222)
...++|+++|.+|+|||||+|+|.+...... ..+..+... ..+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence 4568999999999999999999998764322 223222222 2333333 57899999954
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.42 E-value=8.1e-08 Score=75.85 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER 73 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (222)
++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 6999999999999999999998765322 12223322222233332 578999999653
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.37 E-value=5.4e-07 Score=75.91 Aligned_cols=86 Identities=17% Similarity=0.036 Sum_probs=51.3
Q ss_pred EEEEEEeCCChhhhh-----hhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFR-----AIT-SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
+.+.|+||+|..... .+. ......+|.+++|+|+........ ....+.... .+..||+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~~---~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEAT---PIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHSC---TTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhhC---CCeEEEEECCCCccc--
Confidence 468899999943211 111 122336799999999887543222 222333222 355788999997542
Q ss_pred CCHHHHHHHHHHcCCeEEEEcc
Q 027503 135 VNEEEGKILAETEGLYFMETSA 156 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa 156 (222)
...+.......++|+..++.
T Consensus 255 --gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC
T ss_pred --ccHHHHHHHHHCCCEEEEEc
Confidence 23445556677888877764
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.32 E-value=5.2e-07 Score=76.10 Aligned_cols=83 Identities=14% Similarity=0.019 Sum_probs=47.3
Q ss_pred EEEEEEeCCChhhhhh-----hh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCC-e-EEEEEeCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA-----IT-SSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCM-A-IVLVGNKSDLTHS 132 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~ivv~nK~Dl~~~ 132 (222)
..+.|+||||...... +. ...+..+|.+++|+|+..+.. .... +...... . | ..+|+||+|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~~~-~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFKEA-VGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHHTT-SCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHhhc-ccCCeEEEEeCCCCccc
Confidence 4679999999653211 10 112236899999999876532 2212 2222222 4 5 7888999997431
Q ss_pred CCCCHHHHHHHHHHcCCeEEEE
Q 027503 133 REVNEEEGKILAETEGLYFMET 154 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~ 154 (222)
...+.......+.++..+
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 122334566667665554
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.25 E-value=5.3e-07 Score=71.14 Aligned_cols=92 Identities=10% Similarity=-0.000 Sum_probs=62.0
Q ss_pred CCChhh-hhhhhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027503 68 TAGQER-FRAITSSYYRGALGALLVYDITRRATFEN--TKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGKILA 144 (222)
Q Consensus 68 t~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 144 (222)
.||+.. ........+.++|+++.|+|+.++.+... +. ++ ++|.++|+||+|+.+... .+....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence 466542 23456677899999999999999876543 22 21 589999999999975211 12223344
Q ss_pred HHcCCeEEEEccccCCCHHHHHHHHHHH
Q 027503 145 ETEGLYFMETSAMQNLNVEDAFLQMINQ 172 (222)
Q Consensus 145 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 172 (222)
...+.++ .+||.++.|+.++++.+...
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 4567888 99999999999988776543
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.23 E-value=4.2e-06 Score=73.63 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEFR 38 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~~ 38 (222)
.|+|+|+.|||||||++.+.+-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999986543
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.18 E-value=1.2e-06 Score=76.50 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=38.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCCCcceeeEEEEE--EE-CCeEEEEEEEeCCChh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRL-DSKPTIGVEFAYRNI--RV-GDKLIKAQIWDTAGQE 72 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~ 72 (222)
...++|+|+|.+|+|||||+|+|++..... ....+.+.+.....+ .+ ......+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 467899999999999999999999876421 111111111111111 11 1122468999999965
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.13 E-value=9.7e-07 Score=71.09 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=60.5
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHcCCeE
Q 027503 75 RAITSSYYRGALGALLVYDITRRAT-FENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV--NEEEGKILAETEGLYF 151 (222)
Q Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 151 (222)
..+.+..+.++|.+++|+|+.+|.. ...+..++.... ..++|.+||+||+|+.+.... ..+....+....+.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3455567899999999999998753 333444433333 234889999999999764220 0122233344567899
Q ss_pred EEEccccCCCHHHHHHH
Q 027503 152 METSAMQNLNVEDAFLQ 168 (222)
Q Consensus 152 ~~~Sa~~~~gi~~~~~~ 168 (222)
+.+|+.++.|++++++.
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999888766643
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.13 E-value=8.8e-07 Score=74.57 Aligned_cols=90 Identities=13% Similarity=0.018 Sum_probs=53.8
Q ss_pred EEEEEEeCCChhh--hh-----hhhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCC
Q 027503 61 IKAQIWDTAGQER--FR-----AITS-SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHS 132 (222)
Q Consensus 61 ~~~~l~Dt~G~~~--~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~ 132 (222)
..+.++||||... .. .+.. ......+.+++|+|+........ ....+.... .+..||+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~---~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS---PIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc---CCcEEEEecccccc-
Confidence 4678999999533 11 1111 11225689999999986543222 223333332 45678899999653
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEccccCCCH
Q 027503 133 REVNEEEGKILAETEGLYFMETSAMQNLNV 162 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (222)
....+.......+.|+..++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 233455566667899877775 5554
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.03 E-value=9e-06 Score=65.24 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=55.4
Q ss_pred EEEEEEeCCChhh--hhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCC
Q 027503 61 IKAQIWDTAGQER--FRA-ITS-----SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTH 131 (222)
Q Consensus 61 ~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~ 131 (222)
+.+.++||||... ... +.. .....+|.+++|+|+.... +.......+.. ..| ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 4689999999765 221 111 1344789999999987542 22222222322 145 678899999643
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503 132 SREVNEEEGKILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
....+.......+.|+..++ .|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23345566777888887775 5666643
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.93 E-value=3.2e-05 Score=63.46 Aligned_cols=82 Identities=12% Similarity=0.042 Sum_probs=55.4
Q ss_pred hhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHHH---HHHHHcCCeEEEEcc
Q 027503 81 YYRGALGALLVYDITRRA-TFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEGK---ILAETEGLYFMETSA 156 (222)
Q Consensus 81 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~Sa 156 (222)
...++|.+++|.+.. |. +...+..++....... +|++||+||+|+.+... .+... ......|++++.+|+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~~---~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETLQ---VEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHHT---CEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhcC---CCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEec
Confidence 467899999887764 54 3344555554444443 78899999999976321 11122 233456889999999
Q ss_pred ccCCCHHHHHHH
Q 027503 157 MQNLNVEDAFLQ 168 (222)
Q Consensus 157 ~~~~gi~~~~~~ 168 (222)
.++.|++++...
T Consensus 201 ~~~~gl~~L~~~ 212 (358)
T 2rcn_A 201 HTQDGLKPLEEA 212 (358)
T ss_dssp TTTBTHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 999999987754
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.86 E-value=1.2e-06 Score=74.76 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=62.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCCCcceeeEEEEEEECCeEEEEEEEeCCChhh--hhhhh--------H
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQER--FRAIT--------S 79 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~--------~ 79 (222)
...+.|+++|.+||||||+.++|...... ...++...+.........+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998754321 1112111110000000011112345789888732 22222 4
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEE
Q 027503 80 SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVG 124 (222)
Q Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~ 124 (222)
.++...++.++|+|.++. +......|+..+.... .+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~---~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG---YKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT---CEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC---CcEEEEE
Confidence 566667888999999987 4555566766666543 4454443
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.79 E-value=3.2e-05 Score=62.88 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=51.2
Q ss_pred EEEEEeCCChhhhhh-----hhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCC
Q 027503 62 KAQIWDTAGQERFRA-----ITS-SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREV 135 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (222)
.+.++|++|...... +.. ...-..|-.++++|..... ++......+.... -...+++||.|... .
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a-~-- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA-R-- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS-C--
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc-c--
Confidence 456799999643211 110 1112468889999976553 3333333343332 22367789999532 1
Q ss_pred CHHHHHHHHHHcCCeEEEEccccCCCHHH
Q 027503 136 NEEEGKILAETEGLYFMETSAMQNLNVED 164 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (222)
.-.+.......+.|+..++ +|+++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 2334566677788887776 6666543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.59 E-value=0.00034 Score=59.08 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.+..-|+|+|++++|||+|+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35667999999999999999999864
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.25 E-value=0.00017 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.+++|+|++|||||||++.+.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999987643
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.24 E-value=0.00084 Score=56.57 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=43.8
Q ss_pred EEEEEEeCCChhhhh-hhhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCe-EEEEEeCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFR-AITS-----SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMA-IVLVGNKSDLTHSR 133 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~Dl~~~~ 133 (222)
+.+.|+||||..... .+.. ..+..++.+++|+|+...... ......+... .+ .-||+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCccH
Confidence 468999999954331 1111 224478899999998765322 2222223222 33 34688999974322
Q ss_pred CCCHHHHHHHHHHcCCeE
Q 027503 134 EVNEEEGKILAETEGLYF 151 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (222)
..+.......+.|+
T Consensus 257 ----g~~l~i~~~~~~Pi 270 (433)
T 2xxa_A 257 ----GAALSIRHITGKPI 270 (433)
T ss_dssp ----THHHHHHHHHCCCE
T ss_pred ----HHHHHHHHHHCCCe
Confidence 12334445556553
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.15 E-value=0.00023 Score=52.44 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.08 E-value=0.0003 Score=52.78 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.++|+|++|||||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999876
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.00 E-value=0.00038 Score=52.06 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
-|+|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.99 E-value=0.00015 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|++|||||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998754
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.98 E-value=0.0015 Score=52.40 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++++|++|||||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57999999999999999998 44
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.97 E-value=0.00042 Score=51.31 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
++|+|+.|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999998863
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.95 E-value=0.00042 Score=51.28 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
-.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999875
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.91 E-value=0.0005 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-++|+|+.|||||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999988743
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.90 E-value=0.00054 Score=51.66 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=22.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.....|+|+|++|||||||++.|.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999987643
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.89 E-value=0.00045 Score=50.48 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 027503 14 KAVMIGDSAVGKSNLLSRFA 33 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~ 33 (222)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.88 E-value=0.00055 Score=52.27 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-++|+|+.|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999988743
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.87 E-value=0.00056 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|++|||||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998874
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.86 E-value=0.0006 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
--|+|+|++|||||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999999864
No 251
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.81 E-value=0.0015 Score=54.83 Aligned_cols=85 Identities=19% Similarity=0.066 Sum_probs=47.0
Q ss_pred EEEEEEeCCChhhhhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA-ITS-----SYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
+.+.|+||||...... +.. ...-.+|.+++|+|..... ++......+.... ....||+||.|....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l---~i~GVIlTKlD~~~~-- 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV---GVTGLVLTKLDGDAR-- 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT---CCCEEEEESGGGCSS--
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC---CceEEEEeCcCCccc--
Confidence 4678999999543211 111 1123588899999986542 2222222233221 124677899996421
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 027503 135 VNEEEGKILAETEGLYFMETS 155 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~S 155 (222)
...+.......+.|+..+.
T Consensus 253 --~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 253 --GGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp --CHHHHHHHHHHCCCEEEEE
T ss_pred --HHHHHHHHHHHCCCEEEEe
Confidence 1234455666788876654
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.81 E-value=0.00068 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
--|+|+|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999998653
No 253
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.78 E-value=0.00076 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..|+|+|++||||||+++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998763
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.77 E-value=0.00081 Score=48.61 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChHHHHHHH
Q 027503 13 FKAVMIGDSAVGKSNLLSRF 32 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l 32 (222)
..|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.76 E-value=0.00081 Score=49.99 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
|+|+|++||||+||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.75 E-value=0.00094 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.74 E-value=0.0008 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998754
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.74 E-value=0.00079 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999987644
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.73 E-value=0.00089 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999988754
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.72 E-value=0.00088 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
...-|+|+|++|||||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3446899999999999999998753
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.70 E-value=0.00097 Score=48.21 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 262
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.69 E-value=0.00093 Score=50.46 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.69 E-value=0.00095 Score=49.32 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.68 E-value=0.00099 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
-.|+|+|++|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 265
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.66 E-value=0.001 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 266
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.66 E-value=0.0012 Score=49.08 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
....|+|.|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999998764
No 267
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.64 E-value=0.001 Score=54.62 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEF 37 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~ 37 (222)
.++|+|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998653
No 268
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.64 E-value=0.0011 Score=49.91 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
...|+|+|+.|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 269
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.63 E-value=0.00097 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999987643
No 270
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.62 E-value=0.0012 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFA 33 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~ 33 (222)
...|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999988
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.61 E-value=0.0012 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.57 E-value=0.0013 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997643
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.57 E-value=0.0013 Score=50.10 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 274
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.57 E-value=0.0012 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.57 E-value=0.0017 Score=47.28 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+|+|++||||||+++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 276
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.56 E-value=0.0043 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988653
No 277
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.56 E-value=0.0014 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
++|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998763
No 278
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.56 E-value=0.0012 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998744
No 279
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.56 E-value=0.0013 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..|+|+|.+||||||+++.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998653
No 280
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.55 E-value=0.0013 Score=49.15 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
.+|+|+|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999976
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.54 E-value=0.0015 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988743
No 282
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.54 E-value=0.0015 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+|+|++||||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.53 E-value=0.0015 Score=48.72 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
-.|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.53 E-value=0.0013 Score=51.51 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|+.|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998763
No 285
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.53 E-value=0.0015 Score=48.56 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999865
No 286
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.53 E-value=0.0015 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997753
No 287
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.52 E-value=0.0014 Score=47.77 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..|+|.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998753
No 288
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.52 E-value=0.0017 Score=48.62 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 289
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.52 E-value=0.0013 Score=48.15 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-.++|+|++|+|||+|++.+.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987643
No 290
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.51 E-value=0.0014 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 291
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.51 E-value=0.0013 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37899999999999999998754
No 292
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.0013 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999998764
No 293
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.50 E-value=0.0016 Score=50.02 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.50 E-value=0.0015 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999998763
No 295
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.50 E-value=0.0065 Score=42.79 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+|.|++|+|||++++.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4599999999999999998754
No 296
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.50 E-value=0.0016 Score=52.04 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEF 37 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~ 37 (222)
.++++|++|||||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987553
No 297
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.49 E-value=0.0014 Score=49.60 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|+.|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.49 E-value=0.0016 Score=47.90 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.|+|.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 299
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.49 E-value=0.002 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 300
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.48 E-value=0.0015 Score=51.33 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999987743
No 301
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.48 E-value=0.0015 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.47 E-value=0.0018 Score=47.71 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998754
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.47 E-value=0.0015 Score=47.77 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
....|+|.|.+||||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345699999999999999999864
No 304
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.46 E-value=0.0016 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.46 E-value=0.002 Score=47.53 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 306
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.46 E-value=0.0016 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 307
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.45 E-value=0.0017 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
...|+|+|++||||||+++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999988654
No 308
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.45 E-value=0.0021 Score=49.69 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...++|+|+|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 309
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.45 E-value=0.0017 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999999874
No 310
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.45 E-value=0.0016 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 311
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.43 E-value=0.0018 Score=47.53 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
...++|+|++|||||||++.|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346899999999999999999864
No 312
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.42 E-value=0.0016 Score=49.14 Aligned_cols=22 Identities=14% Similarity=0.376 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.42 E-value=0.0019 Score=47.53 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+|.|.+||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 314
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.42 E-value=0.003 Score=50.83 Aligned_cols=28 Identities=25% Similarity=0.114 Sum_probs=23.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.....-|+|+|++|||||||++.|.+-.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3456789999999999999999987643
No 315
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.41 E-value=0.0018 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 316
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.41 E-value=0.0019 Score=50.94 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 317
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.40 E-value=0.002 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 318
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.40 E-value=0.0019 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 319
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.38 E-value=0.0011 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=14.9
Q ss_pred EEEEEcCCCCChHHHHHHHh-hC
Q 027503 14 KAVMIGDSAVGKSNLLSRFA-RD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~-~~ 35 (222)
-|+|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.38 E-value=0.0022 Score=47.83 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
..+.|+|.|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.38 E-value=0.0017 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 322
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.37 E-value=0.0019 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 323
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.36 E-value=0.002 Score=49.55 Aligned_cols=20 Identities=20% Similarity=0.572 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 027503 14 KAVMIGDSAVGKSNLLSRFA 33 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~ 33 (222)
-++|+|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 324
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.36 E-value=0.0024 Score=47.79 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 325
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.34 E-value=0.002 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987743
No 326
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.34 E-value=0.0023 Score=46.17 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 327
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.34 E-value=0.0021 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 328
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.33 E-value=0.0028 Score=47.48 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
....|+|+|++||||||+++.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999998764
No 329
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.31 E-value=0.0024 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 330
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.28 E-value=0.0026 Score=46.84 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
...|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998654
No 331
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.27 E-value=0.0031 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=22.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
....+-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999998865
No 332
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.27 E-value=0.015 Score=47.12 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
++|.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988763
No 333
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.26 E-value=0.0021 Score=46.82 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 334
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.25 E-value=0.0023 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+++.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.25 E-value=0.0029 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999876
No 336
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.24 E-value=0.0021 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-+++|+|+.|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998874
No 337
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.24 E-value=0.002 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999987644
No 338
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.0012 Score=48.32 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|++|||||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 339
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.23 E-value=0.0027 Score=48.39 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 340
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.21 E-value=0.0033 Score=46.21 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 341
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.20 E-value=0.0033 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=21.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
.....|+|.|++||||||+++.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999864
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.18 E-value=0.0026 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.|+|+|+.|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999998763
No 343
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.18 E-value=0.0039 Score=49.66 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=22.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
......|+|+|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988754
No 344
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.17 E-value=0.0034 Score=46.73 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
...|+|.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998764
No 345
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.17 E-value=0.0028 Score=50.00 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
++|+|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 346
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.17 E-value=0.0019 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|+.|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999998763
No 347
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.16 E-value=0.058 Score=45.49 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFA 33 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~ 33 (222)
.+..-|+|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 456678899999999999999664
No 348
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.16 E-value=0.003 Score=46.49 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 349
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0081 Score=45.88 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.2
Q ss_pred EEEEE--cCCCCChHHHHHHHhhCc
Q 027503 14 KAVMI--GDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~ll--G~~~sGKSsli~~l~~~~ 36 (222)
||+|+ |+++.||++|++++++..
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred ceEEEecCcccccHHHHHHHHhccc
Confidence 45555 999999999999998764
No 350
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.15 E-value=0.0038 Score=46.53 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 351
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.14 E-value=0.0027 Score=52.10 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027503 15 AVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~ 36 (222)
++|+|+.|||||||++.+.+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 7899999999999999998754
No 352
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.14 E-value=0.0043 Score=47.24 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
-|+|+|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999988764
No 353
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.14 E-value=0.0029 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999987643
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.12 E-value=0.0023 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 355
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.11 E-value=0.0031 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-++|+|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998754
No 356
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.10 E-value=0.0033 Score=48.94 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999864
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.10 E-value=0.0033 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998764
No 358
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.09 E-value=0.0029 Score=49.14 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503 9 CDYLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 9 ~~~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
......|+|+|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999864
No 359
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.09 E-value=0.0032 Score=46.47 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 360
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.08 E-value=0.0032 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-++|+|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 37899999999999999998754
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.08 E-value=0.0042 Score=46.44 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
.....|+|+|++|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998865
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.08 E-value=0.0023 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=16.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 363
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.08 E-value=0.0036 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 364
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.08 E-value=0.0034 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-++|+|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 37899999999999999998754
No 365
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.07 E-value=0.0034 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999998754
No 366
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.07 E-value=0.0034 Score=51.90 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-++|+|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999998754
No 367
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.06 E-value=0.0039 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.06 E-value=0.0034 Score=47.54 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
+.|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 369
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.05 E-value=0.0041 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988654
No 370
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.05 E-value=0.0035 Score=46.43 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 371
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.05 E-value=0.0043 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
.+.|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.05 E-value=0.0038 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.020 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.05 E-value=0.0037 Score=45.20 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 374
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.03 E-value=0.0041 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 375
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.03 E-value=0.0055 Score=45.02 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
....|+|.|.+||||||+++.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988653
No 376
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.02 E-value=0.0032 Score=51.09 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998743
No 377
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.02 E-value=0.0037 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 37899999999999999988754
No 378
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.01 E-value=0.0036 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-++|+|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37899999999999999998754
No 379
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.01 E-value=0.0046 Score=49.57 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.....|+|+|+.|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999998764
No 380
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.01 E-value=0.0037 Score=46.88 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 381
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.00 E-value=0.0043 Score=45.31 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..|+|+|.+|||||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998753
No 382
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.99 E-value=0.0033 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|+.|||||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999874
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.99 E-value=0.004 Score=51.39 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.|+|+|++|||||||++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999876
No 384
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.98 E-value=0.0039 Score=45.66 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.98 E-value=0.0039 Score=50.01 Aligned_cols=84 Identities=17% Similarity=0.029 Sum_probs=45.7
Q ss_pred EEEEEeCCChhhhh------------hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503 62 KAQIWDTAGQERFR------------AITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 129 (222)
.+.++|++|..... .+.+......+.+++++|........ ..+..+..... . .+|++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~~--~-t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAVG--L-TGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHHC--C-SEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHcC--C-cEEEEECCcc
Confidence 35688999943211 11223344678888899987654322 22333332221 2 4667899985
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027503 130 THSREVNEEEGKILAETEGLYFMETS 155 (222)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (222)
.... -.+.......+.|+..+.
T Consensus 260 ~a~g----g~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TAKG----GVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SCCC----TTHHHHHHHHCCCEEEEE
T ss_pred cccc----cHHHHHHHHHCCCeEEEe
Confidence 4321 123355556777776664
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.98 E-value=0.0043 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 387
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0092 Score=48.08 Aligned_cols=25 Identities=8% Similarity=-0.052 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..-.++|.|+||+|||++++.+...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999998754
No 388
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.95 E-value=0.0016 Score=48.99 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 389
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.94 E-value=0.0049 Score=44.45 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 390
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.93 E-value=0.0046 Score=48.05 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFA 33 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~ 33 (222)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 391
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.92 E-value=0.0042 Score=47.51 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.-|+|.|+.||||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999998764
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.91 E-value=0.0048 Score=45.04 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..|+|.|.+||||||+++.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998663
No 393
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.90 E-value=0.0046 Score=46.81 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
-++|+|++|+|||||++.+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 394
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.90 E-value=0.007 Score=46.37 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998764
No 395
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.90 E-value=0.0042 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.|+|+|+.|||||||++.+.+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999988743
No 396
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.88 E-value=0.0064 Score=45.32 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-+.|+|.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998653
No 397
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.87 E-value=0.0047 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
.-.++|+|+.||||||+++.|.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 398
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.86 E-value=0.0048 Score=48.53 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|++|+|||+|++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999998764
No 399
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.85 E-value=0.0047 Score=50.07 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998764
No 400
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.84 E-value=0.0031 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-++|+|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998754
No 401
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.80 E-value=0.0054 Score=47.17 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
..+.|+|.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 402
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.80 E-value=0.0046 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|++|||||||++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998644
No 403
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.79 E-value=0.0047 Score=51.23 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4799999999999999998863
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.75 E-value=0.0068 Score=47.91 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHh
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFA 33 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~ 33 (222)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999986
No 405
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.69 E-value=0.0052 Score=44.60 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346799999999999999988654
No 406
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.68 E-value=0.0056 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-++|+|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987644
No 407
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.66 E-value=0.0064 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.|+|.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345999999999999999998763
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.66 E-value=0.0067 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|.+||||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998765
No 409
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.65 E-value=0.0031 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998754
No 410
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.63 E-value=0.0075 Score=45.74 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999988653
No 411
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.61 E-value=0.0071 Score=45.42 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 412
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.61 E-value=0.024 Score=41.98 Aligned_cols=85 Identities=13% Similarity=-0.067 Sum_probs=54.6
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHc--CCCCeEEEEEeCCCCCCCCCCCHH
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFC--SSCMAIVLVGNKSDLTHSREVNEE 138 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~ 138 (222)
+.+.++|+|+.. .......+..+|.+++++..+... ..+..++..+.... ..+.++.+|+|+.|... .. ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HH
Confidence 467899999865 344556677899999999887554 56666666665543 23467789999999532 12 23
Q ss_pred HHHHHHHHcCCeEE
Q 027503 139 EGKILAETEGLYFM 152 (222)
Q Consensus 139 ~~~~~~~~~~~~~~ 152 (222)
+..++....+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 33444444555443
No 413
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.60 E-value=0.0068 Score=44.26 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999764
No 414
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.60 E-value=0.008 Score=44.67 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
..++|.|++|+|||+|++.+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999887543
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.59 E-value=0.0073 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 416
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.58 E-value=0.0077 Score=48.93 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999998764
No 417
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.0054 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|+|+.|||||||++.|.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998764
No 418
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.56 E-value=0.0081 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 419
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.52 E-value=0.0085 Score=45.89 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=21.7
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhh
Q 027503 8 ECDYLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 8 ~~~~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
+......|+|+|.+||||||+.+.|..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344566899999999999999998864
No 420
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.50 E-value=0.0077 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
.-.|+|+|+.||||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999998764
No 421
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.49 E-value=0.0081 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 422
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.46 E-value=0.008 Score=51.29 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
.-.|+|+|+.|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999998764
No 423
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.43 E-value=0.0061 Score=47.55 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=21.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.....|+|.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999988653
No 424
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.42 E-value=0.0093 Score=42.05 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
...|+|.|++|+|||++++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999987644
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.41 E-value=0.009 Score=48.09 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
..-++|+|..|||||||++.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4457899999999999999999753
No 426
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.40 E-value=0.0088 Score=48.83 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
+++|+|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 427
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.39 E-value=0.028 Score=45.19 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..|+|.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999998653
No 428
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.36 E-value=0.009 Score=49.32 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
-.|+|+|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999876
No 429
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.26 E-value=0.012 Score=45.16 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=19.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
.-++++|+|+|||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999998754
No 430
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.24 E-value=0.011 Score=44.58 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 431
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.24 E-value=0.01 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999875
No 432
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.22 E-value=0.011 Score=46.84 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.++|.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 433
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.21 E-value=0.012 Score=51.05 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 434
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.21 E-value=0.012 Score=44.01 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999997643
No 435
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.20 E-value=0.011 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.++|.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998753
No 436
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.19 E-value=0.012 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...|+|.|++|+|||+|++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999999875
No 437
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.13 E-value=0.014 Score=41.53 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=17.2
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 027503 15 AVMIGDSAVGKSNLLSRFA 33 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~ 33 (222)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999864
No 438
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.12 E-value=0.011 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999998764
No 439
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.11 E-value=0.011 Score=44.61 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888765
No 440
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.10 E-value=0.011 Score=46.40 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999875
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.09 E-value=0.012 Score=49.55 Aligned_cols=23 Identities=39% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
+++|+|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998754
No 442
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.07 E-value=0.012 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
-.|+|.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999998763
No 443
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.07 E-value=0.014 Score=43.33 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.04 E-value=0.012 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 445
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.04 E-value=0.22 Score=39.68 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=16.7
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999998653
No 446
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.01 E-value=0.013 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988743
No 447
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.00 E-value=0.013 Score=46.99 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
-.++|.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998753
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.99 E-value=0.013 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
..-|+|+|.+||||||+.+.|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999875
No 449
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.98 E-value=0.014 Score=46.45 Aligned_cols=25 Identities=20% Similarity=0.073 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
...-+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999998754
No 450
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.93 E-value=0.012 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++++|+.|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 451
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.93 E-value=0.017 Score=46.45 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.....|+|.|++|+|||+|++.+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34557999999999999999998653
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.018 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDEF 37 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~~ 37 (222)
.++|+|+.|+|||||++.+.+-..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 489999999999999999987543
No 453
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.90 E-value=0.013 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++++|+.|||||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998764
No 454
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.87 E-value=0.018 Score=45.66 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
....++|.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999986554
No 455
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.82 E-value=0.16 Score=37.89 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=54.1
Q ss_pred EEEEEEeCCCh-hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 027503 61 IKAQIWDTAGQ-ERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEE 139 (222)
Q Consensus 61 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 139 (222)
+.+.++|+|+. .. ......+..+|.+|+++..+ ..+...+...+..+.... +.++.+|+|+.|.... . ...+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~-~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-K-DGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-C-HHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-h-HHHH
Confidence 46789999986 42 23456677899999999875 345566666666666533 3668899999985320 1 1334
Q ss_pred HHHHHHHcCCeEE
Q 027503 140 GKILAETEGLYFM 152 (222)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (222)
..+.....+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4444444665543
No 456
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.80 E-value=0.024 Score=44.20 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 10 DYLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 10 ~~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.....++|.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999998764
No 457
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.78 E-value=0.016 Score=44.17 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027503 14 KAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~ 34 (222)
-++|+|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877654
No 458
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.77 E-value=0.24 Score=37.57 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=58.2
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSREVNEEEG 140 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (222)
+.+.++|+|+.. .......+..+|.+|+++..+ ..+...+..++..+.........+.+|+|+.+... ....
T Consensus 119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~--- 190 (245)
T 3ea0_A 119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS--- 190 (245)
T ss_dssp CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---
T ss_pred CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---
Confidence 467899998854 234556678899999999875 55666777777777655433355788899998543 2233
Q ss_pred HHHHHHcCCeEEEEccc
Q 027503 141 KILAETEGLYFMETSAM 157 (222)
Q Consensus 141 ~~~~~~~~~~~~~~Sa~ 157 (222)
..+....+.+++.+-..
T Consensus 191 ~~~~~~~~~~v~~~ip~ 207 (245)
T 3ea0_A 191 DEIEKVIGRPISKRIPQ 207 (245)
T ss_dssp HHHHHHHTSCEEEEECC
T ss_pred HHHHHHhCCCeEEECCC
Confidence 33444567776655333
No 459
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.76 E-value=0.022 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998754
No 460
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.75 E-value=0.018 Score=45.58 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
...++|.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998653
No 461
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.75 E-value=0.011 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++++|+.|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999988763
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.73 E-value=0.016 Score=50.07 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|||||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 463
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.72 E-value=0.016 Score=47.14 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
-.++|.|++|+|||+|++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998763
No 464
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.71 E-value=0.019 Score=49.67 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 465
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.64 E-value=0.021 Score=46.01 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..-.|+|.|++|+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3457999999999999999998764
No 466
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.64 E-value=0.021 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.63 E-value=0.02 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|+|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998854
No 468
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.63 E-value=0.021 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
-.++|.|++|+|||++++.+....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 469999999999999999887543
No 469
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.62 E-value=0.02 Score=42.14 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
|+|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999754
No 470
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.59 E-value=0.014 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988763
No 471
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.59 E-value=0.02 Score=46.80 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|.|++|+|||+|++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999987644
No 472
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.58 E-value=0.018 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 473
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.58 E-value=0.021 Score=45.55 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=47.2
Q ss_pred EEEEEEeCCChhhhhh--hh--Hhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCCCCC
Q 027503 61 IKAQIWDTAGQERFRA--IT--SSYYR--GALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDLTHSRE 134 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~--~~--~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (222)
..+.|+||+|...... +. ...+. ..+.+++|+|.+.. ...+..+...+. ..+ ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence 3688999999664321 11 12222 36778889987653 233333322222 111 23456799996532
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 027503 135 VNEEEGKILAETEGLYFMETS 155 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~S 155 (222)
...+.......++|+..+.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2255566677888765554
No 474
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.58 E-value=0.019 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027503 14 KAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~~ 36 (222)
.++|.|++|+||||+++.+.+.-
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999987653
No 475
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.56 E-value=0.018 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=17.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
+-.-|+|.|.+||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998764
No 476
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.54 E-value=0.026 Score=46.14 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
..+|+|+|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999987653
No 477
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.52 E-value=0.022 Score=45.62 Aligned_cols=85 Identities=19% Similarity=0.115 Sum_probs=46.6
Q ss_pred EEEEEeCCChhhhhh--------hhHh----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHcCCCCeEEEEEeCCCC
Q 027503 62 KAQIWDTAGQERFRA--------ITSS----YYRGALGALLVYDITRRATFENTKKWLRELREFCSSCMAIVLVGNKSDL 129 (222)
Q Consensus 62 ~~~l~Dt~G~~~~~~--------~~~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~Dl 129 (222)
.+.++|+||...... +... .....+.+++|+|..... ..+.. ...+.... ...-+|+||.|.
T Consensus 188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~---~i~gvVlTk~D~ 261 (306)
T 1vma_A 188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV---NVTGIILTKLDG 261 (306)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS---CCCEEEEECGGG
T ss_pred CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC---CCCEEEEeCCCC
Confidence 578999999532111 1111 112478889999987432 22221 22233221 123466799995
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 027503 130 THSREVNEEEGKILAETEGLYFMETSA 156 (222)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (222)
... .-.+.......+.|+.++..
T Consensus 262 ~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 262 TAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp CSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred ccc----hHHHHHHHHHHCCCEEEEeC
Confidence 432 12366777778888777643
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.49 E-value=0.024 Score=43.49 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
..|+|-|.+||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 479
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.47 E-value=0.024 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
No 480
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.46 E-value=0.022 Score=46.74 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=17.2
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 027503 15 AVMIGDSAVGKSNLLSRFA 33 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~ 33 (222)
.+|+|+.|||||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999875
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.42 E-value=0.022 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEcCCCCChHHHHHHHhhCcC
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEF 37 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~ 37 (222)
++|+|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999987553
No 482
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.41 E-value=0.027 Score=41.16 Aligned_cols=35 Identities=3% Similarity=-0.157 Sum_probs=25.5
Q ss_pred CeEEEEccccCCCHHHHHHHHHHHHHHhhhhhhhh
Q 027503 149 LYFMETSAMQNLNVEDAFLQMINQIHQTTIQKSLC 183 (222)
Q Consensus 149 ~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~ 183 (222)
+|.+.+-...|.++.-+++.++....-...-....
T Consensus 128 iP~i~iPv~~GRn~a~iiE~Aa~n~~lk~~G~~~a 162 (181)
T 3tqf_A 128 VPKILFPIHPGRNLPLLIETLVRNHRLKMEGYDSS 162 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEeccCCCCcHHHHHHHHHHHHHHHHhCCcHH
Confidence 57788888999999999888877665554444333
No 483
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.40 E-value=0.03 Score=44.86 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
..-|+|+|++|||||+|...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34588999999999999999864
No 484
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.38 E-value=0.03 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-|+|+|++|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999998653
No 485
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.37 E-value=0.027 Score=45.13 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.++|.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999987653
No 486
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.024 Score=47.60 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.--|++.|+||+|||+|++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999998753
No 487
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.36 E-value=0.029 Score=42.79 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
...-|+|.|.+||||||+++.|..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456699999999999999998764
No 488
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.33 E-value=0.021 Score=42.92 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027503 13 FKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~ 34 (222)
+.|+|.|++||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998754
No 489
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.025 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
+.-.|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999998763
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.29 E-value=0.012 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027503 14 KAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 14 kI~llG~~~sGKSsli~~l~~~ 35 (222)
.++|.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3889999999999999998753
No 491
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.28 E-value=0.025 Score=45.59 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027503 15 AVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~ 35 (222)
++|.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988654
No 492
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.21 E-value=0.023 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
.-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998753
No 493
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.19 E-value=0.027 Score=47.33 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~~ 35 (222)
+.-.|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998763
No 494
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.16 E-value=0.27 Score=37.87 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=42.9
Q ss_pred EEEEEEeCCChhhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---HHHcCCCCeEE-EEEeCCCCC
Q 027503 61 IKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENTKKWLREL---REFCSSCMAIV-LVGNKSDLT 130 (222)
Q Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l---~~~~~~~~p~i-vv~nK~Dl~ 130 (222)
+.+.++|+|+.... .....+..+|.+|+++..+. .+...+..++..+ ......+.+++ +|+|+.|..
T Consensus 112 yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 112 YDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp CSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 56899999986432 23445667999999998864 3444444444443 33333457764 889999853
No 495
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.14 E-value=0.026 Score=45.97 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
-.++|.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998754
No 496
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.11 E-value=0.03 Score=42.35 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh
Q 027503 11 YLFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 11 ~~~kI~llG~~~sGKSsli~~l~~ 34 (222)
.-.-|+|.|.+||||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999999999864
No 497
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.10 E-value=0.029 Score=43.52 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARDE 36 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~~ 36 (222)
..|+|.|++|+|||+|++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999987644
No 498
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.08 E-value=0.016 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=17.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027503 12 LFKAVMIGDSAVGKSNLLSRFAR 34 (222)
Q Consensus 12 ~~kI~llG~~~sGKSsli~~l~~ 34 (222)
.+.|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998764
No 499
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.07 E-value=0.028 Score=48.72 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027503 13 FKAVMIGDSAVGKSNLLSRFARD 35 (222)
Q Consensus 13 ~kI~llG~~~sGKSsli~~l~~~ 35 (222)
-.++|+|++|+|||||++.+.+.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999988653
No 500
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.06 E-value=0.0044 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhhCcC
Q 027503 15 AVMIGDSAVGKSNLLSRFARDEF 37 (222)
Q Consensus 15 I~llG~~~sGKSsli~~l~~~~~ 37 (222)
++|+|+.|||||||++.+.+-..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46899999999999999876543
Done!