Query 027504
Match_columns 222
No_of_seqs 282 out of 1923
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0823 Predicted E3 ubiquitin 100.0 2.5E-35 5.5E-40 249.3 10.9 179 24-222 43-230 (230)
2 PLN03208 E3 ubiquitin-protein 100.0 1.8E-34 4E-39 240.0 12.9 161 24-222 14-193 (193)
3 KOG0317 Predicted E3 ubiquitin 99.4 2.1E-13 4.6E-18 119.2 3.8 61 20-83 231-291 (293)
4 PF15227 zf-C3HC4_4: zinc fing 99.3 6.5E-13 1.4E-17 85.4 2.5 41 31-71 1-42 (42)
5 KOG0320 Predicted E3 ubiquitin 99.3 3.4E-12 7.4E-17 104.8 4.4 63 19-84 122-186 (187)
6 smart00504 Ubox Modified RING 99.2 6.6E-12 1.4E-16 86.4 3.9 57 28-87 1-57 (63)
7 PF13923 zf-C3HC4_2: Zinc fing 99.1 2.2E-11 4.7E-16 76.8 2.6 38 31-71 1-39 (39)
8 PF13920 zf-C3HC4_3: Zinc fing 99.1 4.5E-11 9.8E-16 79.2 2.8 47 27-76 1-48 (50)
9 PF13639 zf-RING_2: Ring finge 99.1 2.7E-11 5.9E-16 78.2 1.4 40 30-72 2-44 (44)
10 PHA02929 N1R/p28-like protein; 99.0 1.8E-10 3.8E-15 99.8 4.1 49 25-76 171-227 (238)
11 KOG2164 Predicted E3 ubiquitin 99.0 1E-10 2.3E-15 109.2 2.5 62 28-89 186-249 (513)
12 TIGR00599 rad18 DNA repair pro 99.0 1.7E-10 3.7E-15 106.4 3.6 60 22-84 20-79 (397)
13 PF04564 U-box: U-box domain; 99.0 2.6E-10 5.6E-15 81.6 2.7 61 26-88 2-62 (73)
14 PF00097 zf-C3HC4: Zinc finger 99.0 4.8E-10 1E-14 71.0 3.1 40 31-71 1-41 (41)
15 COG5574 PEX10 RING-finger-cont 98.9 3.9E-10 8.4E-15 97.9 2.4 54 26-81 213-267 (271)
16 cd00162 RING RING-finger (Real 98.9 1.3E-09 2.7E-14 68.8 3.5 44 30-75 1-45 (45)
17 COG5243 HRD1 HRD ubiquitin lig 98.9 4.2E-09 9.2E-14 95.3 8.0 50 24-76 283-345 (491)
18 PHA02926 zinc finger-like prot 98.8 1.7E-09 3.6E-14 92.1 2.6 54 23-76 165-230 (242)
19 PF13445 zf-RING_UBOX: RING-ty 98.8 2.6E-09 5.6E-14 69.0 2.4 38 31-69 1-43 (43)
20 PF14634 zf-RING_5: zinc-RING 98.8 3.8E-09 8.3E-14 68.3 2.8 41 30-73 1-44 (44)
21 KOG0287 Postreplication repair 98.8 1.7E-09 3.7E-14 96.8 1.3 59 22-83 17-75 (442)
22 smart00184 RING Ring finger. E 98.8 6.1E-09 1.3E-13 63.4 3.2 39 31-71 1-39 (39)
23 KOG4628 Predicted E3 ubiquitin 98.7 9.6E-09 2.1E-13 93.1 3.6 47 29-77 230-279 (348)
24 PF12678 zf-rbx1: RING-H2 zinc 98.7 1.5E-08 3.2E-13 72.6 3.4 41 29-72 20-73 (73)
25 COG5432 RAD18 RING-finger-cont 98.6 2.3E-08 5E-13 88.1 2.5 58 23-83 20-77 (391)
26 KOG2177 Predicted E3 ubiquitin 98.5 2.3E-08 4.9E-13 85.2 1.1 48 22-72 7-54 (386)
27 COG5540 RING-finger-containing 98.5 4.8E-08 1E-12 86.5 2.3 49 26-76 321-372 (374)
28 KOG0978 E3 ubiquitin ligase in 98.5 3.7E-08 8.1E-13 95.9 0.9 57 26-84 641-697 (698)
29 KOG0802 E3 ubiquitin ligase [P 98.5 4.8E-08 1.1E-12 93.9 1.3 54 24-80 287-345 (543)
30 PF12861 zf-Apc11: Anaphase-pr 98.4 2.8E-07 6E-12 67.7 3.5 50 28-77 21-83 (85)
31 PF14835 zf-RING_6: zf-RING of 98.3 9E-08 2E-12 66.5 0.1 52 27-83 6-58 (65)
32 TIGR00570 cdk7 CDK-activating 98.3 7.5E-07 1.6E-11 79.7 4.1 51 28-80 3-58 (309)
33 KOG4159 Predicted E3 ubiquitin 98.1 1.6E-06 3.5E-11 80.3 2.8 54 21-77 77-130 (398)
34 KOG4172 Predicted E3 ubiquitin 98.1 7.1E-07 1.5E-11 60.0 -0.3 53 28-84 7-60 (62)
35 KOG4265 Predicted E3 ubiquitin 98.0 4.5E-06 9.8E-11 75.5 4.3 50 24-76 286-336 (349)
36 KOG0311 Predicted E3 ubiquitin 98.0 5.4E-07 1.2E-11 81.3 -2.5 51 24-76 39-90 (381)
37 KOG0824 Predicted E3 ubiquitin 97.9 4.1E-06 8.9E-11 74.3 1.7 51 27-79 6-56 (324)
38 KOG1785 Tyrosine kinase negati 97.9 6.6E-06 1.4E-10 75.5 2.8 51 30-81 371-421 (563)
39 PF11789 zf-Nse: Zinc-finger o 97.8 7.1E-06 1.5E-10 56.1 1.5 45 25-70 8-53 (57)
40 KOG2660 Locus-specific chromos 97.8 1.8E-06 3.9E-11 77.3 -2.1 53 24-79 11-64 (331)
41 KOG1734 Predicted RING-contain 97.8 1.1E-05 2.3E-10 70.8 1.5 60 25-85 221-290 (328)
42 PF11793 FANCL_C: FANCL C-term 97.7 1.1E-05 2.3E-10 57.4 1.2 50 28-77 2-67 (70)
43 KOG1645 RING-finger-containing 97.7 5.6E-06 1.2E-10 76.1 -0.4 61 28-89 4-69 (463)
44 KOG0297 TNF receptor-associate 97.7 1.9E-05 4.1E-10 73.3 2.8 57 23-82 16-73 (391)
45 KOG0828 Predicted E3 ubiquitin 97.7 1.5E-05 3.2E-10 74.8 1.7 50 25-76 568-634 (636)
46 COG5152 Uncharacterized conser 97.7 1.5E-05 3.4E-10 67.0 1.6 47 27-76 195-241 (259)
47 KOG1002 Nucleotide excision re 97.6 2.2E-05 4.8E-10 74.4 1.8 57 22-78 530-588 (791)
48 KOG2879 Predicted E3 ubiquitin 97.6 6.6E-05 1.4E-09 66.0 4.2 51 25-76 236-287 (298)
49 KOG0804 Cytoplasmic Zn-finger 97.5 4.8E-05 1E-09 70.7 2.6 50 22-76 169-222 (493)
50 smart00744 RINGv The RING-vari 97.5 0.00011 2.3E-09 48.7 2.9 42 30-72 1-49 (49)
51 KOG1813 Predicted E3 ubiquitin 97.4 4.1E-05 8.8E-10 67.9 0.7 46 28-76 241-286 (313)
52 KOG0827 Predicted E3 ubiquitin 97.4 7.2E-05 1.6E-09 68.5 2.2 54 28-81 4-61 (465)
53 KOG4692 Predicted E3 ubiquitin 97.4 0.00016 3.5E-09 65.7 3.9 53 22-77 416-468 (489)
54 KOG3039 Uncharacterized conser 97.4 0.00014 3E-09 63.2 3.2 60 27-89 220-283 (303)
55 KOG1039 Predicted E3 ubiquitin 97.3 0.00011 2.4E-09 67.0 2.3 51 26-76 159-221 (344)
56 COG5219 Uncharacterized conser 97.2 0.0001 2.3E-09 73.8 1.1 52 24-76 1465-1523(1525)
57 KOG0826 Predicted E3 ubiquitin 97.2 0.00028 6E-09 63.5 3.2 59 24-85 296-355 (357)
58 COG5222 Uncharacterized conser 97.2 0.00018 3.8E-09 64.2 1.6 58 28-87 274-333 (427)
59 KOG1493 Anaphase-promoting com 97.1 0.00017 3.6E-09 51.9 0.7 32 45-76 50-81 (84)
60 KOG0825 PHD Zn-finger protein 97.0 0.00018 4E-09 70.8 0.2 56 27-85 122-180 (1134)
61 KOG1571 Predicted E3 ubiquitin 96.9 0.00044 9.6E-09 62.8 2.1 51 20-76 297-347 (355)
62 KOG4275 Predicted E3 ubiquitin 96.9 0.00012 2.6E-09 64.9 -1.4 42 28-76 300-342 (350)
63 COG5194 APC11 Component of SCF 96.9 0.00082 1.8E-08 48.7 2.7 29 45-76 53-81 (88)
64 PF05290 Baculo_IE-1: Baculovi 96.8 0.00088 1.9E-08 53.1 2.8 52 27-78 79-134 (140)
65 PF04641 Rtf2: Rtf2 RING-finge 96.7 0.0019 4E-08 56.8 4.5 62 23-88 108-173 (260)
66 KOG1001 Helicase-like transcri 96.5 0.00076 1.6E-08 66.7 0.3 53 29-83 455-507 (674)
67 PF14447 Prok-RING_4: Prokaryo 96.1 0.0025 5.5E-08 43.0 1.3 48 27-79 6-53 (55)
68 KOG4739 Uncharacterized protei 96.0 0.003 6.6E-08 54.7 1.5 52 29-85 4-57 (233)
69 KOG1814 Predicted E3 ubiquitin 96.0 0.0034 7.5E-08 58.1 1.7 48 26-73 182-237 (445)
70 PF07800 DUF1644: Protein of u 95.7 0.014 3E-07 47.7 3.9 55 27-81 1-96 (162)
71 KOG1941 Acetylcholine receptor 95.6 0.0036 7.8E-08 57.8 0.4 49 27-76 364-416 (518)
72 KOG4185 Predicted E3 ubiquitin 95.6 0.0075 1.6E-07 53.5 2.3 46 28-75 3-54 (296)
73 KOG2930 SCF ubiquitin ligase, 95.5 0.0064 1.4E-07 46.2 1.3 29 45-76 80-108 (114)
74 KOG3002 Zn finger protein [Gen 95.4 0.014 3E-07 52.6 3.4 48 23-76 43-91 (299)
75 KOG3970 Predicted E3 ubiquitin 95.4 0.013 2.9E-07 50.4 3.0 49 28-76 50-105 (299)
76 PF14570 zf-RING_4: RING/Ubox 95.3 0.01 2.2E-07 39.1 1.7 43 31-75 1-47 (48)
77 PHA03096 p28-like protein; Pro 95.1 0.01 2.2E-07 53.0 1.5 46 29-74 179-232 (284)
78 KOG4367 Predicted Zn-finger pr 95.0 0.012 2.6E-07 55.2 1.7 35 26-60 2-36 (699)
79 COG5236 Uncharacterized conser 94.9 0.025 5.4E-07 51.7 3.5 55 21-76 54-108 (493)
80 KOG2817 Predicted E3 ubiquitin 94.9 0.019 4.1E-07 53.1 2.7 54 27-80 333-389 (394)
81 KOG4445 Uncharacterized conser 94.5 0.011 2.5E-07 52.8 0.4 54 24-77 111-187 (368)
82 KOG3800 Predicted E3 ubiquitin 94.4 0.029 6.3E-07 49.9 2.6 47 30-78 2-53 (300)
83 PHA02825 LAP/PHD finger-like p 94.4 0.053 1.1E-06 44.4 3.8 50 26-77 6-60 (162)
84 KOG4362 Transcriptional regula 94.3 0.0087 1.9E-07 58.9 -1.0 51 27-77 20-70 (684)
85 KOG1428 Inhibitor of type V ad 94.1 0.028 6.2E-07 59.3 2.2 54 24-77 3482-3545(3738)
86 PF08746 zf-RING-like: RING-li 94.1 0.044 9.5E-07 35.1 2.3 40 31-71 1-43 (43)
87 COG5175 MOT2 Transcriptional r 93.8 0.037 8E-07 50.4 2.0 49 30-80 16-68 (480)
88 KOG2114 Vacuolar assembly/sort 93.6 0.033 7.2E-07 55.8 1.5 42 28-75 840-882 (933)
89 PHA02862 5L protein; Provision 93.2 0.067 1.5E-06 43.2 2.4 47 29-77 3-54 (156)
90 PF02891 zf-MIZ: MIZ/SP-RING z 93.0 0.073 1.6E-06 35.2 2.0 46 28-74 2-50 (50)
91 PF10272 Tmpp129: Putative tra 92.8 0.12 2.6E-06 47.7 3.8 35 46-80 311-355 (358)
92 PF12906 RINGv: RING-variant d 92.8 0.079 1.7E-06 34.6 1.9 40 31-71 1-47 (47)
93 KOG0298 DEAD box-containing he 92.5 0.018 3.9E-07 59.9 -2.1 48 24-74 1149-1197(1394)
94 KOG1952 Transcription factor N 92.0 0.083 1.8E-06 53.1 1.8 51 26-76 189-247 (950)
95 KOG1815 Predicted E3 ubiquitin 91.9 0.13 2.9E-06 48.5 3.1 62 24-85 66-135 (444)
96 PF10367 Vps39_2: Vacuolar sor 91.8 0.065 1.4E-06 39.8 0.7 33 24-56 74-108 (109)
97 KOG3161 Predicted E3 ubiquitin 91.7 0.057 1.2E-06 52.8 0.4 42 27-74 10-55 (861)
98 PF05883 Baculo_RING: Baculovi 91.4 0.097 2.1E-06 41.7 1.3 33 28-60 26-67 (134)
99 KOG1940 Zn-finger protein [Gen 91.0 0.13 2.8E-06 45.8 1.8 44 27-73 157-204 (276)
100 KOG1812 Predicted E3 ubiquitin 90.8 0.15 3.2E-06 47.4 2.1 51 27-77 145-204 (384)
101 COG5220 TFB3 Cdk activating ki 90.8 0.069 1.5E-06 46.6 -0.1 52 25-78 7-66 (314)
102 KOG1100 Predicted E3 ubiquitin 90.4 0.12 2.5E-06 44.2 0.9 39 31-76 161-200 (207)
103 PF03854 zf-P11: P-11 zinc fin 90.2 0.1 2.2E-06 34.3 0.3 44 29-77 3-47 (50)
104 COG5183 SSM4 Protein involved 89.7 0.28 6E-06 49.4 3.1 55 25-80 9-70 (1175)
105 KOG3268 Predicted E3 ubiquitin 89.7 0.23 4.9E-06 41.6 2.1 34 44-77 188-229 (234)
106 KOG0825 PHD Zn-finger protein 89.5 0.35 7.5E-06 48.6 3.6 58 19-76 87-154 (1134)
107 KOG3579 Predicted E3 ubiquitin 89.1 0.57 1.2E-05 41.9 4.2 37 26-62 266-306 (352)
108 COG5109 Uncharacterized conser 88.3 0.29 6.3E-06 44.3 2.0 54 27-80 335-391 (396)
109 KOG3113 Uncharacterized conser 88.3 0.58 1.3E-05 41.1 3.8 57 26-87 109-169 (293)
110 KOG3039 Uncharacterized conser 88.3 0.37 8E-06 42.3 2.5 36 27-62 42-77 (303)
111 KOG2932 E3 ubiquitin ligase in 87.7 0.21 4.6E-06 45.1 0.7 41 31-76 93-134 (389)
112 KOG2034 Vacuolar sorting prote 87.4 0.31 6.7E-06 49.3 1.7 36 25-60 814-851 (911)
113 KOG3899 Uncharacterized conser 83.9 0.55 1.2E-05 42.2 1.4 35 46-80 325-369 (381)
114 KOG3053 Uncharacterized conser 83.8 0.73 1.6E-05 40.6 2.1 55 22-76 14-82 (293)
115 KOG1609 Protein involved in mR 77.3 2.7 5.8E-05 37.0 3.5 49 28-77 78-135 (323)
116 KOG4718 Non-SMC (structural ma 70.0 2.4 5.1E-05 36.5 1.3 46 27-75 180-226 (235)
117 COG0068 HypF Hydrogenase matur 67.3 3.7 8E-05 41.1 2.1 52 22-73 95-181 (750)
118 PF14446 Prok-RING_1: Prokaryo 65.7 8 0.00017 26.1 2.9 30 27-56 4-37 (54)
119 COG3813 Uncharacterized protei 65.2 4.2 9.2E-05 29.1 1.6 39 45-88 26-64 (84)
120 PF14569 zf-UDP: Zinc-binding 64.6 10 0.00023 27.5 3.5 51 27-79 8-65 (80)
121 KOG0827 Predicted E3 ubiquitin 64.2 0.6 1.3E-05 43.4 -3.6 46 29-77 197-246 (465)
122 KOG0289 mRNA splicing factor [ 63.7 7.8 0.00017 36.8 3.4 54 30-86 2-56 (506)
123 KOG2068 MOT2 transcription fac 62.5 5.6 0.00012 36.3 2.2 47 26-75 247-297 (327)
124 KOG2979 Protein involved in DN 61.3 3.9 8.5E-05 36.0 1.0 43 28-71 176-219 (262)
125 PF10571 UPF0547: Uncharacteri 60.7 4.6 9.9E-05 23.1 0.9 9 30-38 2-10 (26)
126 PLN02638 cellulose synthase A 59.5 17 0.00038 38.2 5.4 49 29-79 18-73 (1079)
127 KOG0309 Conserved WD40 repeat- 59.2 5.8 0.00013 40.1 1.9 39 29-70 1029-1069(1081)
128 KOG1812 Predicted E3 ubiquitin 59.1 4.8 0.0001 37.5 1.2 41 28-71 306-351 (384)
129 PF07191 zinc-ribbons_6: zinc- 59.0 0.36 7.8E-06 34.3 -4.8 41 28-76 1-41 (70)
130 PF10235 Cript: Microtubule-as 57.9 7 0.00015 29.1 1.7 37 28-76 44-80 (90)
131 KOG0802 E3 ubiquitin ligase [P 56.0 9.9 0.00021 36.9 2.9 50 23-79 474-523 (543)
132 PF06844 DUF1244: Protein of u 54.4 8 0.00017 27.2 1.4 13 49-61 11-23 (68)
133 KOG2169 Zn-finger transcriptio 54.1 9.7 0.00021 37.8 2.5 55 25-80 303-360 (636)
134 PLN02400 cellulose synthase 53.5 12 0.00026 39.3 3.1 49 29-79 37-92 (1085)
135 KOG4185 Predicted E3 ubiquitin 53.3 2.5 5.4E-05 37.3 -1.6 46 27-74 206-265 (296)
136 KOG2113 Predicted RNA binding 53.2 11 0.00024 34.3 2.5 47 25-76 340-387 (394)
137 PLN02189 cellulose synthase 52.3 16 0.00035 38.2 3.8 52 28-81 34-92 (1040)
138 PLN02436 cellulose synthase A 51.0 17 0.00037 38.2 3.8 50 28-79 36-92 (1094)
139 KOG2789 Putative Zn-finger pro 50.6 14 0.00031 34.7 2.8 58 27-84 73-153 (482)
140 PF05605 zf-Di19: Drought indu 48.8 23 0.0005 23.2 3.0 42 27-76 1-42 (54)
141 PLN02195 cellulose synthase A 46.7 23 0.00049 37.0 3.8 48 28-77 6-60 (977)
142 CHL00038 psbL photosystem II p 46.7 22 0.00049 22.0 2.4 17 204-220 13-29 (38)
143 PF06906 DUF1272: Protein of u 46.6 18 0.00039 24.6 2.1 24 49-77 30-53 (57)
144 PF04216 FdhE: Protein involve 46.0 2.9 6.3E-05 37.1 -2.4 47 25-74 169-220 (290)
145 PF10146 zf-C4H2: Zinc finger- 45.9 14 0.00031 32.0 2.0 24 50-76 196-219 (230)
146 PF04710 Pellino: Pellino; In 44.5 6.7 0.00014 36.7 -0.3 48 26-76 275-339 (416)
147 PLN02248 cellulose synthase-li 44.4 1.2E+02 0.0027 32.2 8.7 32 45-79 149-180 (1135)
148 KOG2231 Predicted E3 ubiquitin 44.1 17 0.00036 36.4 2.4 49 30-78 2-54 (669)
149 PF04423 Rad50_zn_hook: Rad50 43.7 9.5 0.00021 25.1 0.5 13 67-79 22-34 (54)
150 smart00647 IBR In Between Ring 43.3 4.1 8.9E-05 27.0 -1.4 14 45-58 45-58 (64)
151 KOG3842 Adaptor protein Pellin 43.0 26 0.00056 32.1 3.2 54 25-78 338-416 (429)
152 PF06716 DUF1201: Protein of u 42.2 39 0.00085 22.1 3.1 20 202-221 7-26 (54)
153 KOG4451 Uncharacterized conser 41.8 15 0.00033 32.0 1.5 24 50-76 251-274 (286)
154 PLN02915 cellulose synthase A 41.7 46 0.001 35.0 5.1 51 27-79 14-71 (1044)
155 PF04710 Pellino: Pellino; In 40.9 9.1 0.0002 35.9 0.0 51 27-77 327-402 (416)
156 TIGR01562 FdhE formate dehydro 40.3 9.6 0.00021 34.5 0.1 46 26-74 182-233 (305)
157 smart00064 FYVE Protein presen 40.0 25 0.00054 23.8 2.1 33 28-60 10-46 (68)
158 PF01363 FYVE: FYVE zinc finge 39.9 5.7 0.00012 27.2 -1.1 32 26-57 7-42 (69)
159 PF05399 EVI2A: Ectropic viral 39.7 19 0.00041 31.0 1.8 18 205-222 131-148 (227)
160 PF03908 Sec20: Sec20; InterP 39.5 43 0.00093 24.4 3.5 23 199-221 67-89 (92)
161 KOG0269 WD40 repeat-containing 39.4 29 0.00063 35.2 3.2 44 30-76 781-828 (839)
162 PF10497 zf-4CXXC_R1: Zinc-fin 39.3 37 0.0008 25.8 3.2 29 47-75 37-71 (105)
163 PF14353 CpXC: CpXC protein 37.6 26 0.00056 27.0 2.1 48 29-76 2-49 (128)
164 PF12773 DZR: Double zinc ribb 37.5 28 0.00061 22.1 2.0 29 48-76 12-40 (50)
165 COG5627 MMS21 DNA repair prote 35.2 21 0.00046 31.3 1.4 49 27-76 188-239 (275)
166 smart00132 LIM Zinc-binding do 34.6 28 0.00061 20.1 1.5 34 31-75 2-37 (39)
167 KOG1356 Putative transcription 34.3 18 0.0004 36.9 1.0 48 27-74 228-280 (889)
168 PF07975 C1_4: TFIIH C1-like d 34.2 29 0.00063 23.0 1.6 25 45-72 26-50 (51)
169 cd00065 FYVE FYVE domain; Zinc 34.1 27 0.00058 22.7 1.5 31 29-59 3-37 (57)
170 COG5346 Predicted membrane pro 32.4 57 0.0012 25.8 3.2 22 200-221 85-106 (136)
171 KOG2042 Ubiquitin fusion degra 32.3 47 0.001 34.6 3.5 60 25-87 867-927 (943)
172 KOG0824 Predicted E3 ubiquitin 30.7 15 0.00033 33.2 -0.2 50 24-76 101-151 (324)
173 PRK03564 formate dehydrogenase 30.4 20 0.00042 32.6 0.4 45 26-73 185-234 (309)
174 smart00249 PHD PHD zinc finger 29.9 18 0.0004 21.7 0.1 26 31-56 2-30 (47)
175 PRK00753 psbL photosystem II r 28.9 52 0.0011 20.5 2.0 16 204-219 14-29 (39)
176 PF04272 Phospholamban: Phosph 27.5 1.4E+02 0.003 19.5 3.8 13 208-220 36-48 (52)
177 PF10083 DUF2321: Uncharacteri 27.5 33 0.00072 28.1 1.2 27 47-79 27-53 (158)
178 PF10215 Ost4: Oligosaccaryltr 27.2 64 0.0014 19.8 2.2 21 201-221 4-24 (35)
179 COG5574 PEX10 RING-finger-cont 26.9 65 0.0014 28.6 3.0 38 23-60 90-132 (271)
180 PF10854 DUF2649: Protein of u 26.8 69 0.0015 22.1 2.5 24 199-222 34-57 (67)
181 TIGR01294 P_lamban phospholamb 26.4 1.4E+02 0.003 19.5 3.7 13 208-220 36-48 (52)
182 cd00350 rubredoxin_like Rubred 26.3 41 0.00088 19.9 1.2 11 64-74 16-26 (33)
183 COG3492 Uncharacterized protei 26.3 30 0.00065 25.9 0.7 15 49-63 42-56 (104)
184 TIGR00143 hypF [NiFe] hydrogen 26.0 31 0.00066 34.9 0.9 52 25-76 65-151 (711)
185 smart00734 ZnF_Rad18 Rad18-lik 25.5 25 0.00055 19.8 0.1 12 67-78 3-14 (26)
186 PRK09174 F0F1 ATP synthase sub 25.4 80 0.0017 26.7 3.2 21 201-221 50-70 (204)
187 PF02009 Rifin_STEVOR: Rifin/s 25.3 55 0.0012 29.6 2.3 19 203-221 261-279 (299)
188 KOG2066 Vacuolar assembly/sort 25.1 27 0.00058 35.6 0.3 33 28-60 784-823 (846)
189 KOG1074 Transcriptional repres 24.3 79 0.0017 32.6 3.4 23 19-41 596-618 (958)
190 PF01485 IBR: IBR domain; Int 24.2 8 0.00017 25.5 -2.5 14 45-58 45-58 (64)
191 COG4647 AcxC Acetone carboxyla 24.1 40 0.00087 27.0 1.1 21 33-53 62-82 (165)
192 KOG1814 Predicted E3 ubiquitin 24.1 34 0.00074 32.3 0.8 32 26-57 366-403 (445)
193 PF09986 DUF2225: Uncharacteri 23.9 32 0.0007 29.3 0.6 23 64-86 4-26 (214)
194 COG4098 comFA Superfamily II D 23.5 32 0.0007 32.1 0.5 33 24-56 35-68 (441)
195 KOG4443 Putative transcription 23.4 45 0.00098 33.3 1.5 54 23-76 13-73 (694)
196 PF12459 DUF3687: D-Ala-teicho 23.4 1.6E+02 0.0034 18.8 3.5 23 198-220 5-27 (42)
197 PF13719 zinc_ribbon_5: zinc-r 23.3 38 0.00081 20.6 0.6 11 29-39 3-13 (37)
198 PHA00646 hypothetical protein 23.2 51 0.0011 22.8 1.3 24 199-222 32-55 (65)
199 KOG0812 SNARE protein SED5/Syn 22.5 73 0.0016 28.8 2.5 17 205-221 293-309 (311)
200 PRK06870 secG preprotein trans 21.7 1.1E+02 0.0025 21.5 3.0 21 200-220 48-68 (76)
201 KOG0314 Predicted E3 ubiquitin 21.6 24 0.00051 33.7 -0.8 46 24-73 215-263 (448)
202 PF02532 PsbI: Photosystem II 21.3 90 0.002 19.2 2.0 16 206-221 5-20 (36)
203 PF09451 ATG27: Autophagy-rela 20.7 92 0.002 27.3 2.8 20 202-221 201-220 (268)
204 KOG4217 Nuclear receptors of t 20.2 2.5E+02 0.0055 27.3 5.7 23 27-55 268-293 (605)
205 PF13124 DUF3963: Protein of u 20.2 2E+02 0.0044 17.8 3.4 20 199-218 15-34 (40)
206 PF13240 zinc_ribbon_2: zinc-r 20.1 15 0.00033 20.2 -1.4 6 67-72 15-20 (23)
207 KOG1829 Uncharacterized conser 20.1 33 0.00072 33.8 -0.1 24 44-73 535-558 (580)
208 KOG2807 RNA polymerase II tran 20.1 74 0.0016 29.3 2.1 40 30-72 332-374 (378)
No 1
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-35 Score=249.33 Aligned_cols=179 Identities=44% Similarity=0.870 Sum_probs=122.2
Q ss_pred CCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCCC-CCCCCCCCCCCCC
Q 027504 24 NDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT-QTDPRSKSYPGID 102 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~~-~~d~~~k~~~~~~ 102 (222)
.+...++|+||+|..+|||++.|||+|||+||++|++.+..++.|||||..|+.++|+|+|++|.. .++++++.
T Consensus 43 ~~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~~~~~~~~~----- 117 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSKKPSDPRKKD----- 117 (230)
T ss_pred CCCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCCCCCCccccc-----
Confidence 467889999999999999999999999999999999999889999999999999999999999984 66776654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccccc-------ccCccchhccccCCCCccccCCCCC
Q 027504 103 IPSRPAGQRPETAPPPEASYFPNLGFGLMGGFMPMATARIGNFTMGFA-------GLFPSLFNIQFHGFPDATVYGTTSG 175 (222)
Q Consensus 103 ip~Rp~~~r~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~g~~~~~~g-------~~~p~~f~~~~~~~~~~~~~~~~~~ 175 (222)
+|+||+++|.+++.+...+ ...|++...|........+...+++++| +++|.+|.. +.||....
T Consensus 118 vP~RP~~~R~e~~~p~~~~-~~~~g~r~~g~~~~~~~~~~f~~s~~i~~~~~~v~~~~p~~~~~--------~lf~~~~~ 188 (230)
T KOG0823|consen 118 VPPRPAGQRYESKRPTPQN-RGNHGFRFFGFRLGEESSNRFMYSFGIGLFGDPVMGLFPFGLYT--------RLFGTDET 188 (230)
T ss_pred CCCCCCCccccccCCCCcc-ccccccccccccccccCCcceeEEeecccCCCceeeecccccee--------eecCCCCC
Confidence 8999999998865442111 1112322121110000111112233322 244433333 33443333
Q ss_pred CCCCCccCCCCCCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHhC
Q 027504 176 FPNGFSAFHGGHVHGFPQPS-RGQQADNVLKNLLLLIGLFVILALLFW 222 (222)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~ 222 (222)
++ . .+. . ...+++. ++||++++|+++++|+++++++||+++
T Consensus 189 ~~-~-~~~---~-~~~~~~~~r~~q~e~~ls~~f~~~~~~~~~~l~~~ 230 (230)
T KOG0823|consen 189 FP-A-DTP---R-PSPARPLGRQMQRENSLSRVFLFLACFFVSWLLVI 230 (230)
T ss_pred cc-c-cCC---C-CCCCccccccchhhcccccchhhhhhhheeeeeeC
Confidence 33 1 111 0 1123334 889999999999999999999999874
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=100.00 E-value=1.8e-34 Score=239.98 Aligned_cols=161 Identities=32% Similarity=0.693 Sum_probs=119.9
Q ss_pred CCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhc-------------CCCCCCCcccccccccccccccCCCCCC
Q 027504 24 NDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHH-------------SHSQECPVCKAVVQEEKLVPLYGRGKTQ 90 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~-------------~~~~~CPvCr~~v~~~~l~p~~~~~~~~ 90 (222)
...++++|+||++.+++|++++|||+|||.||.+|+... .....||+||..++..+++|+|+++..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~~- 92 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQK- 92 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCCC-
Confidence 344679999999999999999999999999999998642 234689999999999999999999873
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCcccccCCCCcccccccccCc--cchhccccCCCCc
Q 027504 91 TDPRSKSYPGIDIPSRPAGQRPETAPPPEASYF-PNLGFGLMGGFMPMATARIGNFTMGFAGLFP--SLFNIQFHGFPDA 167 (222)
Q Consensus 91 ~d~~~k~~~~~~ip~Rp~~~r~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~g~~~~~~g~~~p--~~f~~~~~~~~~~ 167 (222)
+...+..+|+||.+.+.+..+..+.-.+ +.|.| . +|.+.| +|||.++ .+
T Consensus 93 -----~~~~~~~iP~rp~~~~~~~~~~~~~~~~~~~~~~-----------------~--~~~~~p~~g~~~~~~----~~ 144 (193)
T PLN03208 93 -----APQSGSNVPSRPSGPVYDLRGVGQRLGEGESQRY-----------------M--YRMPDPVMGVVCEMV----YR 144 (193)
T ss_pred -----CCCCCCCCCcCCCCCccCCCCcccccccccccee-----------------e--eccCCccccchhhhh----hh
Confidence 3344567999999977663111100000 11111 1 233444 5777664 57
Q ss_pred cccCCC--CCCCCCCccCCCCCCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHhC
Q 027504 168 TVYGTT--SGFPNGFSAFHGGHVHGFPQPS-RGQQADNVLKNLLLLIGLFVILALLFW 222 (222)
Q Consensus 168 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~ 222 (222)
++||+. +.|+|. +.+||++ |+||+|++||||+|||+|||+||||+|
T Consensus 145 r~fg~~~~~~~~~~---------~~~~r~r~~~~q~~~sl~r~~~f~~c~~~~~~~~f 193 (193)
T PLN03208 145 RLFGESSSNMAPYR---------DMNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193 (193)
T ss_pred hhhCCccccccccc---------cCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhC
Confidence 778865 455544 2368888 999999999999999999999999998
No 3
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.1e-13 Score=119.24 Aligned_cols=61 Identities=34% Similarity=0.916 Sum_probs=52.0
Q ss_pred CCCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccc
Q 027504 20 GNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83 (222)
Q Consensus 20 ~~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~ 83 (222)
++.........|.+|++...+|.-++|||+|||.||..|.. .+..||+||..++..+++-+
T Consensus 231 ~~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~---ek~eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCS---EKAECPLCREKFQPSKVICL 291 (293)
T ss_pred CCccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHc---cccCCCcccccCCCcceeee
Confidence 33444556689999999999999999999999999999999 45579999999998887643
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.33 E-value=6.5e-13 Score=85.41 Aligned_cols=41 Identities=46% Similarity=1.051 Sum_probs=32.4
Q ss_pred ccccccCCCCcEEcccCCccCHhHHHHHHHhcCCC-CCCCcc
Q 027504 31 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHS-QECPVC 71 (222)
Q Consensus 31 C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~-~~CPvC 71 (222)
|+||++.+++|+.++|||+||..||.+|++..... ..||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999999865433 689987
No 5
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.4e-12 Score=104.83 Aligned_cols=63 Identities=25% Similarity=0.777 Sum_probs=52.6
Q ss_pred CCCCCCCCCCccccccccCCCCc--EEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027504 19 VGNSANDAGGFECNICFELAQDP--IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 19 ~~~~~~~~~~~~C~ICl~~~~~p--v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
+.+....+..+.|+|||+...+. +.+.|||+||..||+..++ ....||+|++.|.++.+.++|
T Consensus 122 ~v~~~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk---~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 122 DVDPLRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK---NTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccccccccccCCCceecchhhccccccccchhHHHHHHHHHHH---hCCCCCCcccccchhhheecc
Confidence 33445556778999999988664 5589999999999999998 567999999999998888876
No 6
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.24 E-value=6.6e-12 Score=86.39 Aligned_cols=57 Identities=25% Similarity=0.497 Sum_probs=50.9
Q ss_pred CccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCC
Q 027504 28 GFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRG 87 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~ 87 (222)
++.|+||.+.+.+|++++|||+||..||.+|++. ...||+|+..++.++++++....
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~---~~~cP~~~~~~~~~~l~~~~~l~ 57 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS---HGTDPVTGQPLTHEDLIPNLALK 57 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH---CCCCCCCcCCCChhhceeCHHHH
Confidence 4679999999999999999999999999999984 56899999999988888876544
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.15 E-value=2.2e-11 Score=76.79 Aligned_cols=38 Identities=47% Similarity=1.253 Sum_probs=32.9
Q ss_pred ccccccCCCCc-EEcccCCccCHhHHHHHHHhcCCCCCCCcc
Q 027504 31 CNICFELAQDP-IVTLCGHLFCWPCLYRWLHHHSHSQECPVC 71 (222)
Q Consensus 31 C~ICl~~~~~p-v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvC 71 (222)
|+||++.+.+| +.++|||+||+.|+.+|++. ..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~---~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK---NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC---TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC---cCCCcCC
Confidence 89999999999 57899999999999999993 5799987
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.10 E-value=4.5e-11 Score=79.23 Aligned_cols=47 Identities=40% Similarity=0.987 Sum_probs=40.9
Q ss_pred CCccccccccCCCCcEEcccCCc-cCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 27 GGFECNICFELAQDPIVTLCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
++..|.||++...+.+.++|||. ||..|+.+|++ ....||+||+.+.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK---RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH---TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc---cCCCCCcCChhhc
Confidence 35789999999999999999999 99999999999 5679999999876
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.09 E-value=2.7e-11 Score=78.17 Aligned_cols=40 Identities=40% Similarity=1.076 Sum_probs=33.7
Q ss_pred cccccccCCC---CcEEcccCCccCHhHHHHHHHhcCCCCCCCccc
Q 027504 30 ECNICFELAQ---DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCK 72 (222)
Q Consensus 30 ~C~ICl~~~~---~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr 72 (222)
+|+||++.+. ..+.++|||.||..||.+|++. +.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~---~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR---NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH---SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh---CCcCCccC
Confidence 6999999884 3466899999999999999995 45999997
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.03 E-value=1.8e-10 Score=99.82 Aligned_cols=49 Identities=35% Similarity=0.878 Sum_probs=41.0
Q ss_pred CCCCccccccccCCCCc--------EEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 25 DAGGFECNICFELAQDP--------IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~p--------v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
...+.+|+||++.+.++ +.++|+|.||..||.+|++ ....||+||..+.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~---~~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK---EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh---cCCCCCCCCCEee
Confidence 34568999999987653 4568999999999999998 4569999999877
No 11
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1e-10 Score=109.21 Aligned_cols=62 Identities=29% Similarity=0.853 Sum_probs=55.2
Q ss_pred CccccccccCCCCcEEcccCCccCHhHHHHHHHhc--CCCCCCCcccccccccccccccCCCCC
Q 027504 28 GFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHH--SHSQECPVCKAVVQEEKLVPLYGRGKT 89 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~--~~~~~CPvCr~~v~~~~l~p~~~~~~~ 89 (222)
+..||||++...-|+.+.|||+||++||.++|... .....||.|+..|..++|.|.+.+...
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~q 249 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQ 249 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecccc
Confidence 78899999999999999999999999999998854 245799999999999999999887663
No 12
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=1.7e-10 Score=106.39 Aligned_cols=60 Identities=33% Similarity=0.712 Sum_probs=50.8
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027504 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
-......+.|+||++.+.+|++++|||.||..||..|+.. ...||+|+..+...++.+++
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~---~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN---QPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC---CCCCCCCCCccccccCccch
Confidence 3556678999999999999999999999999999999984 45899999988866665443
No 13
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.98 E-value=2.6e-10 Score=81.61 Aligned_cols=61 Identities=26% Similarity=0.504 Sum_probs=48.8
Q ss_pred CCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCC
Q 027504 26 AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~ 88 (222)
.+.+.|+|+.+.+.|||++++||+|+..||.+|++. ....||.|++.+..++++|++.+..
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~--~~~~~P~t~~~l~~~~l~pn~~Lk~ 62 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ--NGGTDPFTRQPLSESDLIPNRALKS 62 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT--TSSB-TTT-SB-SGGGSEE-HHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc--CCCCCCCCCCcCCcccceECHHHHH
Confidence 357899999999999999999999999999999994 3679999999999999999876543
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.96 E-value=4.8e-10 Score=70.96 Aligned_cols=40 Identities=50% Similarity=1.264 Sum_probs=36.5
Q ss_pred ccccccCCCCcE-EcccCCccCHhHHHHHHHhcCCCCCCCcc
Q 027504 31 CNICFELAQDPI-VTLCGHLFCWPCLYRWLHHHSHSQECPVC 71 (222)
Q Consensus 31 C~ICl~~~~~pv-~l~CGH~FC~~Cl~~wl~~~~~~~~CPvC 71 (222)
|+||++.+.+++ .++|||.||..|+.+|++. .....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~-~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN-SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH-TSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh-cCCccCCcC
Confidence 899999999999 7899999999999999996 356789987
No 15
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.9e-10 Score=97.87 Aligned_cols=54 Identities=37% Similarity=0.941 Sum_probs=46.4
Q ss_pred CCCccccccccCCCCcEEcccCCccCHhHHHH-HHHhcCCCCCCCcccccccccccc
Q 027504 26 AGGFECNICFELAQDPIVTLCGHLFCWPCLYR-WLHHHSHSQECPVCKAVVQEEKLV 81 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~-wl~~~~~~~~CPvCr~~v~~~~l~ 81 (222)
..+++|.||++...+|..++|||+|||.||.. |-.. ....||+||+.+..++++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~--k~~~CplCRak~~pk~vi 267 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK--KYEFCPLCRAKVYPKKVI 267 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhh--ccccCchhhhhccchhhh
Confidence 45889999999999999999999999999998 7763 234599999998877763
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=1.3e-09 Score=68.79 Aligned_cols=44 Identities=43% Similarity=1.237 Sum_probs=37.3
Q ss_pred cccccccCCCCcEEcc-cCCccCHhHHHHHHHhcCCCCCCCcccccc
Q 027504 30 ECNICFELAQDPIVTL-CGHLFCWPCLYRWLHHHSHSQECPVCKAVV 75 (222)
Q Consensus 30 ~C~ICl~~~~~pv~l~-CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v 75 (222)
+|+||++.+.+++.+. |||.||..|+..|++. ....||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh--CcCCCCCCCCcC
Confidence 5999999997777664 9999999999999984 356899998753
No 17
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4.2e-09 Score=95.30 Aligned_cols=50 Identities=32% Similarity=0.802 Sum_probs=42.1
Q ss_pred CCCCCccccccccCC-C------------CcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 24 NDAGGFECNICFELA-Q------------DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~-~------------~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
...++..|.||+|.+ . .|+.++|||.+|..|++.|++ +++.||.||.++-
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E---RqQTCPICr~p~i 345 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE---RQQTCPICRRPVI 345 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH---hccCCCcccCccc
Confidence 356778899999984 2 247899999999999999999 5679999999854
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.82 E-value=1.7e-09 Score=92.12 Aligned_cols=54 Identities=28% Similarity=0.822 Sum_probs=42.4
Q ss_pred CCCCCCccccccccCCCC---------cEEcccCCccCHhHHHHHHHhcC---CCCCCCccccccc
Q 027504 23 ANDAGGFECNICFELAQD---------PIVTLCGHLFCWPCLYRWLHHHS---HSQECPVCKAVVQ 76 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~---------pv~l~CGH~FC~~Cl~~wl~~~~---~~~~CPvCr~~v~ 76 (222)
...+.+.+|.||+|...+ ++..+|+|.||..||.+|.+.+. ....||.||..+.
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 345567899999998633 35569999999999999998532 2467999999876
No 19
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.80 E-value=2.6e-09 Score=69.00 Aligned_cols=38 Identities=39% Similarity=0.943 Sum_probs=23.6
Q ss_pred ccccccCCCC----cEEcccCCccCHhHHHHHHHhc-CCCCCCC
Q 027504 31 CNICFELAQD----PIVTLCGHLFCWPCLYRWLHHH-SHSQECP 69 (222)
Q Consensus 31 C~ICl~~~~~----pv~l~CGH~FC~~Cl~~wl~~~-~~~~~CP 69 (222)
|+||.+ +.+ |++|+|||+||..||.++++.. ....+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 777 8999999999999999999854 2466776
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.79 E-value=3.8e-09 Score=68.25 Aligned_cols=41 Identities=46% Similarity=1.127 Sum_probs=34.9
Q ss_pred cccccccCC---CCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccc
Q 027504 30 ECNICFELA---QDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKA 73 (222)
Q Consensus 30 ~C~ICl~~~---~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~ 73 (222)
+|+||++.+ ..+++++|||+||..|+.++. .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~---~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK---GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc---CCCCCCcCCCC
Confidence 599999988 346789999999999999887 25679999985
No 21
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.78 E-value=1.7e-09 Score=96.79 Aligned_cols=59 Identities=32% Similarity=0.695 Sum_probs=51.3
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccc
Q 027504 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~ 83 (222)
-...+..++|-||.|++.-|++++|+|.||.-||..+|. ....||.|+..+.+.++.-+
T Consensus 17 lk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~---~~p~CP~C~~~~~Es~Lr~n 75 (442)
T KOG0287|consen 17 LKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS---YKPQCPTCCVTVTESDLRNN 75 (442)
T ss_pred hhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc---cCCCCCceecccchhhhhhh
Confidence 445667899999999999999999999999999999999 45699999999987766544
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.77 E-value=6.1e-09 Score=63.37 Aligned_cols=39 Identities=49% Similarity=1.318 Sum_probs=34.9
Q ss_pred ccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcc
Q 027504 31 CNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVC 71 (222)
Q Consensus 31 C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvC 71 (222)
|+||++...+++.++|||.||..|+..|++ .....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~--~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK--SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH--hCcCCCCCC
Confidence 889999999999999999999999999998 245679987
No 23
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=9.6e-09 Score=93.08 Aligned_cols=47 Identities=32% Similarity=0.714 Sum_probs=40.1
Q ss_pred ccccccccCCCCc---EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 29 FECNICFELAQDP---IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 29 ~~C~ICl~~~~~p---v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
..|.||+|.+++. +.|||.|.||..||..||... ...||+||..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~--r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT--RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc--CccCCCCCCcCCC
Confidence 7999999999765 458999999999999999953 4679999997664
No 24
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.68 E-value=1.5e-08 Score=72.56 Aligned_cols=41 Identities=39% Similarity=1.110 Sum_probs=32.4
Q ss_pred ccccccccCCCCc-------------EEcccCCccCHhHHHHHHHhcCCCCCCCccc
Q 027504 29 FECNICFELAQDP-------------IVTLCGHLFCWPCLYRWLHHHSHSQECPVCK 72 (222)
Q Consensus 29 ~~C~ICl~~~~~p-------------v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr 72 (222)
..|.||++.+.++ +..+|||.||..||.+|++. ...||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ---NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT---SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc---CCcCCCCC
Confidence 3499999988432 33489999999999999994 45999997
No 25
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.59 E-value=2.3e-08 Score=88.10 Aligned_cols=58 Identities=33% Similarity=0.569 Sum_probs=48.8
Q ss_pred CCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccc
Q 027504 23 ANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~ 83 (222)
...+..+.|-||.+.++-|+.++|||.||.-||.++|. ....||+||....+..+...
T Consensus 20 ~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~---~qp~CP~Cr~~~~esrlr~~ 77 (391)
T COG5432 20 KGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG---TQPFCPVCREDPCESRLRGS 77 (391)
T ss_pred hcchhHHHhhhhhheeecceecccccchhHHHHHHHhc---CCCCCccccccHHhhhcccc
Confidence 34556788999999999999999999999999999999 45699999998776554433
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.3e-08 Score=85.21 Aligned_cols=48 Identities=35% Similarity=0.844 Sum_probs=42.9
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccc
Q 027504 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCK 72 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr 72 (222)
.....+.+.|+||++.+.+|++++|||.||..|+..++. ....||.||
T Consensus 7 ~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~---~~~~Cp~cr 54 (386)
T KOG2177|consen 7 LEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE---GPLSCPVCR 54 (386)
T ss_pred hhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC---CCcCCcccC
Confidence 345568899999999999998899999999999999887 457999999
No 27
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.8e-08 Score=86.53 Aligned_cols=49 Identities=35% Similarity=0.769 Sum_probs=40.4
Q ss_pred CCCccccccccCCCC---cEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 26 AGGFECNICFELAQD---PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~---pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
..-.+|.||++.+.. -+++||.|.||.+|+.+|+.. .+..||+||..+.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~--y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG--YSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh--hcccCCccCCCCC
Confidence 345889999987743 266899999999999999983 4579999998765
No 28
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.7e-08 Score=95.94 Aligned_cols=57 Identities=25% Similarity=0.666 Sum_probs=51.6
Q ss_pred CCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027504 26 AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
..-+.|++|.+..+|.+++.|||+||..|+.+.+.+ +..+||.|.+.+...++.++|
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et--RqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYET--RQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHH--hcCCCCCCCCCCCcccccccC
Confidence 356789999999999999999999999999998886 457999999999999998876
No 29
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.8e-08 Score=93.90 Aligned_cols=54 Identities=33% Similarity=0.727 Sum_probs=45.8
Q ss_pred CCCCCccccccccCCCC-----cEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027504 24 NDAGGFECNICFELAQD-----PIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~-----pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
....+..|.||+|.+.. +..++|||.||..|+.+|++. ...||.||..+.....
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er---~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER---QQTCPTCRTVLYDYVL 345 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH---hCcCCcchhhhhcccc
Confidence 45567889999999988 789999999999999999994 6799999996554443
No 30
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.39 E-value=2.8e-07 Score=67.72 Aligned_cols=50 Identities=32% Similarity=0.751 Sum_probs=38.1
Q ss_pred CccccccccCCC-----------C-cEE-cccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 28 GFECNICFELAQ-----------D-PIV-TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 28 ~~~C~ICl~~~~-----------~-pv~-l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
+..|.||...+. + |++ -.|+|.||..||.+|+++++.+..||.||+....
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 455666665443 2 334 3899999999999999987667899999998653
No 31
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.35 E-value=9e-08 Score=66.54 Aligned_cols=52 Identities=29% Similarity=0.790 Sum_probs=26.8
Q ss_pred CCccccccccCCCCcEE-cccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccc
Q 027504 27 GGFECNICFELAQDPIV-TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~ 83 (222)
+.+.|++|.+.+++||. ..|.|.||+.||.+-+. ..||+|+.+.-.+++.-+
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-----~~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-----SECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-----TB-SSS--B-S-SS----
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-----CCCCCcCChHHHHHHHhh
Confidence 45789999999999986 59999999999976443 359999998776665443
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=7.5e-07 Score=79.74 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=38.7
Q ss_pred CccccccccC-CCCcE----EcccCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027504 28 GFECNICFEL-AQDPI----VTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 28 ~~~C~ICl~~-~~~pv----~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
+..||||... +..|. +..|||.||..|+...+.. ....||+|+..+..+++
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~--~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC--CCCCCCCCCCccchhhc
Confidence 4679999984 33332 2279999999999997753 45689999998887664
No 33
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.6e-06 Score=80.33 Aligned_cols=54 Identities=39% Similarity=0.854 Sum_probs=47.1
Q ss_pred CCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
.......+++|.||...+.+|++++|||.||..||.+-+. ....||.||..+.+
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld---~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD---QETECPLCRDELVE 130 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc---cCCCCccccccccc
Confidence 3455578999999999999999999999999999998666 56799999998773
No 34
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=7.1e-07 Score=60.05 Aligned_cols=53 Identities=32% Similarity=0.876 Sum_probs=43.4
Q ss_pred CccccccccCCCCcEEcccCCc-cCHhHHHHHHHhcCCCCCCCccccccccccccccc
Q 027504 28 GFECNICFELAQDPIVTLCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLY 84 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~ 84 (222)
+.+|.||.|...|.|...|||. .|..|-.+.++. ..-.||.||+++. +++..|
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~--~~g~CPiCRapi~--dvIkTY 60 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA--LHGCCPICRAPIK--DVIKTY 60 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHc--cCCcCcchhhHHH--HHHHhh
Confidence 3789999999999999999996 799998887762 4568999999987 555444
No 35
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4.5e-06 Score=75.50 Aligned_cols=50 Identities=30% Similarity=0.791 Sum_probs=42.4
Q ss_pred CCCCCccccccccCCCCcEEcccCCc-cCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 24 NDAGGFECNICFELAQDPIVTLCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
..+...+|.||+...+|-+++||-|+ .|..|.+...- ....||+||+.+.
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~---q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY---QTNNCPICRQPIE 336 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHH---hhcCCCccccchH
Confidence 34557889999999999999999998 89999987653 2458999999987
No 36
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=5.4e-07 Score=81.29 Aligned_cols=51 Identities=31% Similarity=0.733 Sum_probs=43.5
Q ss_pred CCCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 24 NDAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
+...++.|+||+++++..+.+ .|+|.||..||.+-++ .....||.||+.+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r--~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALR--SGNNECPTCRKKLV 90 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHH--hcCCCCchHHhhcc
Confidence 344678899999999998876 7999999999988777 46789999999765
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.1e-06 Score=74.28 Aligned_cols=51 Identities=25% Similarity=0.661 Sum_probs=43.1
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
..-+|.||+....-|+.++|+|.||.-||+--... ....|++||.++.++-
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n--dk~~CavCR~pids~i 56 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN--DKKTCAVCRFPIDSTI 56 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhc--CCCCCceecCCCCcch
Confidence 45689999999999999999999999999865552 4567999999998653
No 38
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.90 E-value=6.6e-06 Score=75.54 Aligned_cols=51 Identities=35% Similarity=0.861 Sum_probs=43.8
Q ss_pred cccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccc
Q 027504 30 ECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLV 81 (222)
Q Consensus 30 ~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~ 81 (222)
.|.||-|.-+|-.+-+|||+.|..|+..|.... ..+.||.||..++....+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd-~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD-EGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccC-CCCCCCceeeEeccccce
Confidence 499999999998888999999999999998754 378999999999865543
No 39
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.84 E-value=7.1e-06 Score=56.07 Aligned_cols=45 Identities=27% Similarity=0.668 Sum_probs=32.0
Q ss_pred CCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCc
Q 027504 25 DAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPV 70 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPv 70 (222)
....+.|||.+..+++||.. .|||+|....|.+|++. .....||+
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~-~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQR-NGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTT-TS-EE-SC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHh-cCCCCCCC
Confidence 34568899999999999985 99999999999999943 35789998
No 40
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.83 E-value=1.8e-06 Score=77.30 Aligned_cols=53 Identities=28% Similarity=0.681 Sum_probs=45.6
Q ss_pred CCCCCccccccccCCCCcEE-cccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 24 NDAGGFECNICFELAQDPIV-TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~-l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
......+|.+|..++.|+.. +.|-|+||.+||.+++.. ...||.|...+....
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~---~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE---SKYCPTCDIVIHKTH 64 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH---hccCCccceeccCcc
Confidence 34567899999999999976 589999999999999994 679999999887553
No 41
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.1e-05 Score=70.80 Aligned_cols=60 Identities=22% Similarity=0.425 Sum_probs=45.7
Q ss_pred CCCCccccccccCCCCc----------EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccC
Q 027504 25 DAGGFECNICFELAQDP----------IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~p----------v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~ 85 (222)
-.++.-|.||-..+... ..+.|+|+|+..||.-|.-.. .++.||.||+.++.+++..+..
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivG-KkqtCPYCKekVdl~rmfsnpW 290 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVG-KKQTCPYCKEKVDLKRMFSNPW 290 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeec-CCCCCchHHHHhhHhhhccCcc
Confidence 34556699998665433 357999999999999998753 5789999999998766655443
No 42
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.75 E-value=1.1e-05 Score=57.39 Aligned_cols=50 Identities=36% Similarity=0.828 Sum_probs=25.5
Q ss_pred CccccccccCCC-C---cEE----cccCCccCHhHHHHHHHhcCCC--------CCCCcccccccc
Q 027504 28 GFECNICFELAQ-D---PIV----TLCGHLFCWPCLYRWLHHHSHS--------QECPVCKAVVQE 77 (222)
Q Consensus 28 ~~~C~ICl~~~~-~---pv~----l~CGH~FC~~Cl~~wl~~~~~~--------~~CPvCr~~v~~ 77 (222)
+.+|.||.+... + |++ ..|+..||..||++|+...... -.||.|++.++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 578999998754 2 222 2799999999999999853221 269999998763
No 43
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=5.6e-06 Score=76.05 Aligned_cols=61 Identities=28% Similarity=0.741 Sum_probs=51.2
Q ss_pred CccccccccCCCCc-----EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCCC
Q 027504 28 GFECNICFELAQDP-----IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT 89 (222)
Q Consensus 28 ~~~C~ICl~~~~~p-----v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~~ 89 (222)
-.+|+||+|.+.-+ +.+.|||.|-..||++|+. +.....||.|+-.-.++.+.+.|.....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 46799999988765 4579999999999999996 5567899999999888888888876543
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.72 E-value=1.9e-05 Score=73.33 Aligned_cols=57 Identities=35% Similarity=0.821 Sum_probs=48.4
Q ss_pred CCCCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCccccccccccccc
Q 027504 23 ANDAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVP 82 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p 82 (222)
...+.++.|++|...+.+|+.+ .|||.||..|+..|+.. ...||+|+..+...+.++
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~---~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN---HQKCPVCRQELTQAEELP 73 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhcc---CcCCcccccccchhhccC
Confidence 3367789999999999999995 99999999999999984 679999988777655544
No 45
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.5e-05 Score=74.85 Aligned_cols=50 Identities=28% Similarity=0.728 Sum_probs=39.2
Q ss_pred CCCCccccccccCCC-----------------CcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 25 DAGGFECNICFELAQ-----------------DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~-----------------~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.....+|+||+..+. +-+++||.|+|+..|+.+|+.+ .+..||+||..+.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~--ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT--YKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh--hcccCCccCCCCC
Confidence 345678999996542 1245699999999999999994 3468999998765
No 46
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.69 E-value=1.5e-05 Score=67.02 Aligned_cols=47 Identities=38% Similarity=0.761 Sum_probs=40.6
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
-.|.|-||...++.||++.|||.||..|..+-.+ ....|-+|.+...
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~---kg~~C~~Cgk~t~ 241 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ---KGDECGVCGKATY 241 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhc---cCCcceecchhhc
Confidence 4578999999999999999999999999987666 4678999987643
No 47
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.63 E-value=2.2e-05 Score=74.36 Aligned_cols=57 Identities=28% Similarity=0.743 Sum_probs=48.4
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhc--CCCCCCCccccccccc
Q 027504 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHH--SHSQECPVCKAVVQEE 78 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~--~~~~~CPvCr~~v~~~ 78 (222)
.....+..+|.+|.|..+|++++.|.|.||.-|+.+++... +....||+|-..++-+
T Consensus 530 ~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 44456778999999999999999999999999999998743 3458999999887754
No 48
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=6.6e-05 Score=65.98 Aligned_cols=51 Identities=31% Similarity=0.706 Sum_probs=41.9
Q ss_pred CCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 25 DAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
...+.+|++|-+....|.+. +|||+||.-|+.+-.... ....||.|...+.
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~-asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD-ASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch-hhcccCccCCCCc
Confidence 34668899999999999886 699999999998866643 3679999988665
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.53 E-value=4.8e-05 Score=70.75 Aligned_cols=50 Identities=28% Similarity=0.719 Sum_probs=40.8
Q ss_pred CCCCCCCccccccccCCCCcE----EcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 22 SANDAGGFECNICFELAQDPI----VTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv----~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.-...+.-+|+||++.+.+.+ .+.|.|.|+-.|+.+|.. ..||+||...+
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~-----~scpvcR~~q~ 222 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD-----SSCPVCRYCQS 222 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc-----CcChhhhhhcC
Confidence 344556778999999987654 369999999999999987 48999998665
No 50
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.47 E-value=0.00011 Score=48.66 Aligned_cols=42 Identities=33% Similarity=0.890 Sum_probs=33.6
Q ss_pred ccccccc--CCCCcEEcccC-----CccCHhHHHHHHHhcCCCCCCCccc
Q 027504 30 ECNICFE--LAQDPIVTLCG-----HLFCWPCLYRWLHHHSHSQECPVCK 72 (222)
Q Consensus 30 ~C~ICl~--~~~~pv~l~CG-----H~FC~~Cl~~wl~~~~~~~~CPvCr 72 (222)
.|-||++ ...++.+.||. |.+|..|+.+|+..+ ....||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~-~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINES-GNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHc-CCCcCCCCC
Confidence 3889997 44567778985 789999999999865 356899995
No 51
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=4.1e-05 Score=67.87 Aligned_cols=46 Identities=35% Similarity=0.806 Sum_probs=40.5
Q ss_pred CccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 28 GFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.+.|-||...+.+||++.|||.||..|..+-++ ....|.+|.+...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q---k~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ---KGEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccc---cCCcceecccccc
Confidence 467999999999999999999999999987666 5678999988755
No 52
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=7.2e-05 Score=68.54 Aligned_cols=54 Identities=30% Similarity=0.802 Sum_probs=40.2
Q ss_pred CccccccccCCCCcE----EcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccc
Q 027504 28 GFECNICFELAQDPI----VTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLV 81 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv----~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~ 81 (222)
..+|.||.+....-. +-.|||+|+..|+.+|.+.......||.|+-.+....+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 467999966543322 236999999999999999876667999999666655444
No 53
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00016 Score=65.69 Aligned_cols=53 Identities=25% Similarity=0.629 Sum_probs=46.3
Q ss_pred CCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 22 SANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
+-.++++..|+||..-...+|..||+|.-|..||.+++. ..+.|-.||..+..
T Consensus 416 ~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm---N~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM---NCKRCFFCKTTVID 468 (489)
T ss_pred CCCCcccccCcceecccchhhccCCCCchHHHHHHHHHh---cCCeeeEecceeee
Confidence 344567788999999999999999999999999999999 67799999998774
No 54
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.00014 Score=63.20 Aligned_cols=60 Identities=13% Similarity=0.347 Sum_probs=51.4
Q ss_pred CCccccccccCCCCc----EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCCC
Q 027504 27 GGFECNICFELAQDP----IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGKT 89 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~~ 89 (222)
..+.|+||.+.+.+. +..+|||++|..|+.+++. ....||+|..++++++++++..-|..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir---~D~v~pv~d~plkdrdiI~LqrGGTG 283 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR---KDMVDPVTDKPLKDRDIIGLQRGGTG 283 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc---ccccccCCCCcCcccceEeeeccccc
Confidence 678899999999875 3459999999999999998 56799999999999999998765543
No 55
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00011 Score=66.99 Aligned_cols=51 Identities=29% Similarity=0.821 Sum_probs=41.1
Q ss_pred CCCccccccccCCCCcE-----E---cccCCccCHhHHHHHHHhcCC----CCCCCccccccc
Q 027504 26 AGGFECNICFELAQDPI-----V---TLCGHLFCWPCLYRWLHHHSH----SQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv-----~---l~CGH~FC~~Cl~~wl~~~~~----~~~CPvCr~~v~ 76 (222)
..+..|.||++...+.. . .+|-|.||..||.+|-..... ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 56788999999887765 3 579999999999999864321 579999998765
No 56
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.23 E-value=0.0001 Score=73.84 Aligned_cols=52 Identities=31% Similarity=0.860 Sum_probs=40.6
Q ss_pred CCCCCccccccccCCC--C---c--EEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 24 NDAGGFECNICFELAQ--D---P--IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~--~---p--v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
..++..+|+||...+. | | .--.|.|-||..|+++|.+.. ++.+||+||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss-~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASS-ARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhc-CCCCCCccccccc
Confidence 4567789999987654 1 2 223799999999999999964 5789999997764
No 57
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00028 Score=63.49 Aligned_cols=59 Identities=25% Similarity=0.701 Sum_probs=47.2
Q ss_pred CCCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccC
Q 027504 24 NDAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~ 85 (222)
.......|+||+....+|.++ --|-+||++|+.+++.. ...|||-..+..-+.++.++.
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~---~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN---YGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh---cCCCCccCCcchHHHHHHHhc
Confidence 344567799999999999776 45999999999999994 458999877777667776654
No 58
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.15 E-value=0.00018 Score=64.16 Aligned_cols=58 Identities=31% Similarity=0.684 Sum_probs=45.8
Q ss_pred CccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCcccc-cccccccccccCCC
Q 027504 28 GFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKA-VVQEEKLVPLYGRG 87 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~-~v~~~~l~p~~~~~ 87 (222)
.+.|+.|..++++|+.+ -|+|.||..||..-|.. ....||.|.. .+-.+.+.|.+...
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d--sDf~CpnC~rkdvlld~l~pD~dk~ 333 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD--SDFKCPNCSRKDVLLDGLTPDIDKK 333 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhh--ccccCCCcccccchhhccCccHHHH
Confidence 38899999999999999 68999999999977663 4689999965 45555666665543
No 59
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00017 Score=51.87 Aligned_cols=32 Identities=31% Similarity=0.884 Sum_probs=29.4
Q ss_pred ccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 45 LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 45 ~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.|.|.|+..||.+|+........||.||+...
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 79999999999999998877889999999765
No 60
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.99 E-value=0.00018 Score=70.85 Aligned_cols=56 Identities=27% Similarity=0.560 Sum_probs=40.5
Q ss_pred CCccccccccCCCCcEE---cccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccC
Q 027504 27 GGFECNICFELAQDPIV---TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~---l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~ 85 (222)
....|++|+....|..+ .+|+|.||..||..|-+ ....||+||..+.+.++.-.+.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR---~aqTCPiDR~EF~~v~V~eS~~ 180 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR---CAQTCPVDRGEFGEVKVLESTG 180 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh---hcccCchhhhhhheeeeecccc
Confidence 34457777766555433 37999999999999998 4679999999988655544333
No 61
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00044 Score=62.85 Aligned_cols=51 Identities=25% Similarity=0.680 Sum_probs=39.5
Q ss_pred CCCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 20 GNSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 20 ~~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
+..........|.||++...+.+.++|||.-| |..-..+ ..+||+||+.+.
T Consensus 297 ~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~----l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 297 GTFRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH----LPQCPVCRQRIR 347 (355)
T ss_pred CcccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh----CCCCchhHHHHH
Confidence 33445566778999999999999999999976 7654333 346999999876
No 62
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00012 Score=64.88 Aligned_cols=42 Identities=33% Similarity=0.846 Sum_probs=35.8
Q ss_pred CccccccccCCCCcEEcccCCc-cCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 28 GFECNICFELAQDPIVTLCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
...|.||+|...|.+.|+|||. -|..|=.+ ...||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-------cccCchHHHHHH
Confidence 6779999999999999999995 68888643 347999999776
No 63
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.88 E-value=0.00082 Score=48.74 Aligned_cols=29 Identities=34% Similarity=0.877 Sum_probs=26.0
Q ss_pred ccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 45 LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 45 ~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.|.|.|+..||++||.+ +..||.+++...
T Consensus 53 ~CnHaFH~HCI~rWL~T---k~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT---KGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhh---CCCCCCCCceeE
Confidence 79999999999999995 458999998765
No 64
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.84 E-value=0.00088 Score=53.09 Aligned_cols=52 Identities=29% Similarity=0.611 Sum_probs=45.5
Q ss_pred CCccccccccCCCCcEEc----ccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027504 27 GGFECNICFELAQDPIVT----LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l----~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
.-.+|+||.|...|...+ -||-..|--|-...|++...-..||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 568999999999998877 4999999999999999876778999999988754
No 65
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.74 E-value=0.0019 Score=56.81 Aligned_cols=62 Identities=27% Similarity=0.520 Sum_probs=49.2
Q ss_pred CCCCCCccccccccCCCCc---EE-cccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCC
Q 027504 23 ANDAGGFECNICFELAQDP---IV-TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~p---v~-l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~ 88 (222)
......+.|||....+..- |. .+|||+|+..+|.+.- ....||+|-.++...++|++.....
T Consensus 108 ~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k----~~~~Cp~c~~~f~~~DiI~Lnp~~e 173 (260)
T PF04641_consen 108 DNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK----KSKKCPVCGKPFTEEDIIPLNPPEE 173 (260)
T ss_pred ccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc----ccccccccCCccccCCEEEecCCcc
Confidence 3456789999999888542 22 3999999999998762 2457999999999999999876554
No 66
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.48 E-value=0.00076 Score=66.67 Aligned_cols=53 Identities=34% Similarity=0.848 Sum_probs=45.2
Q ss_pred ccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccc
Q 027504 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPL 83 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~ 83 (222)
..|.||.+ ...++.+.|||.||..|+...+... ....||.||..+.++++...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~-~~~~~~~cr~~l~~~~l~s~ 507 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQS-ENAPCPLCRNVLKEKKLLSA 507 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccc-cCCCCcHHHHHHHHHHHhhc
Confidence 89999999 8888999999999999999988754 34589999999988776553
No 67
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.15 E-value=0.0025 Score=43.05 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=37.8
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
....|-.|...-...++++|||+.|..|..-+ +-.-||.|...+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~-----rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE-----RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh-----hccCCCCCCCcccCCC
Confidence 44567888888888899999999999998643 2347999999887544
No 68
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.01 E-value=0.003 Score=54.65 Aligned_cols=52 Identities=38% Similarity=0.864 Sum_probs=36.8
Q ss_pred ccccccccCC-CCc-EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccC
Q 027504 29 FECNICFELA-QDP-IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYG 85 (222)
Q Consensus 29 ~~C~ICl~~~-~~p-v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~ 85 (222)
..|+.|...- .++ ..+.|+|+||..|...- ....||.||+.+...++.+++.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-----~~~~C~lCkk~ir~i~l~~slp 57 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-----SPDVCPLCKKSIRIIQLNRSLP 57 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC-----Cccccccccceeeeeecccccc
Confidence 4688887544 333 34699999999998531 2238999999988766655544
No 69
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0034 Score=58.11 Aligned_cols=48 Identities=31% Similarity=0.668 Sum_probs=36.7
Q ss_pred CCCccccccccCCCC---cEEcccCCccCHhHHHHHHHhc-----CCCCCCCcccc
Q 027504 26 AGGFECNICFELAQD---PIVTLCGHLFCWPCLYRWLHHH-----SHSQECPVCKA 73 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~---pv~l~CGH~FC~~Cl~~wl~~~-----~~~~~CPvCr~ 73 (222)
...++|.||++...- -+.++|+|.||..|+..+...+ ....+||.++-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 456889999997644 3558999999999999987743 23578888554
No 70
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.66 E-value=0.014 Score=47.68 Aligned_cols=55 Identities=24% Similarity=0.601 Sum_probs=40.0
Q ss_pred CCccccccccCCCCcEEccc------------CCcc-CHhHHHHHHHhcC----------------------------CC
Q 027504 27 GGFECNICFELAQDPIVTLC------------GHLF-CWPCLYRWLHHHS----------------------------HS 65 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~C------------GH~F-C~~Cl~~wl~~~~----------------------------~~ 65 (222)
++..|+||+|...++|.|.| +-.| +..||.++-+... ..
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 45789999999999999854 3333 5679998766321 13
Q ss_pred CCCCcccccccccccc
Q 027504 66 QECPVCKAVVQEEKLV 81 (222)
Q Consensus 66 ~~CPvCr~~v~~~~l~ 81 (222)
..||+||-.|..-.++
T Consensus 81 L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVV 96 (162)
T ss_pred ccCccccCceeceEEc
Confidence 5899999998865554
No 71
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.64 E-value=0.0036 Score=57.76 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=37.9
Q ss_pred CCccccccccCCCC--c--EEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 27 GGFECNICFELAQD--P--IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 27 ~~~~C~ICl~~~~~--p--v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
-.+-|..|-+.+-. - --++|.|+||..|++++++.. ....||.||+..+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n-~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN-GTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC-CCCCCccHHHHHh
Confidence 34669999987632 2 237999999999999999754 5789999995544
No 72
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.0075 Score=53.48 Aligned_cols=46 Identities=35% Similarity=0.671 Sum_probs=37.8
Q ss_pred CccccccccCCC------CcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccc
Q 027504 28 GFECNICFELAQ------DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVV 75 (222)
Q Consensus 28 ~~~C~ICl~~~~------~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v 75 (222)
..+|.||-+.+. -|.++.|||.+|..|+.+.+.. ....||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~--~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN--SRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC--ceeeccCCCCcc
Confidence 467999988764 3677899999999999987773 567899999984
No 73
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.0064 Score=46.23 Aligned_cols=29 Identities=31% Similarity=0.839 Sum_probs=25.2
Q ss_pred ccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 45 LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 45 ~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.|.|.|+..||.+|+++ ...||+|.+.-.
T Consensus 80 ~CNHaFH~hCisrWlkt---r~vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT---RNVCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhh---cCcCCCcCccee
Confidence 79999999999999994 569999987643
No 74
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.43 E-value=0.014 Score=52.57 Aligned_cols=48 Identities=31% Similarity=0.706 Sum_probs=39.0
Q ss_pred CCCCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 23 ANDAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
..+.+-++||||.+.+..|+.- .=||+-|..|-.+. ..+||.||..+.
T Consensus 43 ~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~------~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV------SNKCPTCRLPIG 91 (299)
T ss_pred ccchhhccCchhhccCcccceecCCCcEehhhhhhhh------cccCCccccccc
Confidence 4456779999999999988653 67999999998642 348999999887
No 75
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.013 Score=50.45 Aligned_cols=49 Identities=27% Similarity=0.650 Sum_probs=37.9
Q ss_pred CccccccccCCC--CcEEcccCCccCHhHHHHHHHhc-----CCCCCCCccccccc
Q 027504 28 GFECNICFELAQ--DPIVTLCGHLFCWPCLYRWLHHH-----SHSQECPVCKAVVQ 76 (222)
Q Consensus 28 ~~~C~ICl~~~~--~pv~l~CGH~FC~~Cl~~wl~~~-----~~~~~CPvCr~~v~ 76 (222)
.-.|.+|...+. |-+.+-|-|+|+|.|+.+|...- .....||.|...|-
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 345888887765 45778999999999999998742 33579999988754
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.33 E-value=0.01 Score=39.14 Aligned_cols=43 Identities=26% Similarity=0.607 Sum_probs=21.2
Q ss_pred ccccccCCCC--cEEc--ccCCccCHhHHHHHHHhcCCCCCCCcccccc
Q 027504 31 CNICFELAQD--PIVT--LCGHLFCWPCLYRWLHHHSHSQECPVCKAVV 75 (222)
Q Consensus 31 C~ICl~~~~~--pv~l--~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v 75 (222)
|++|.+.+.. -... +||+-.|..|..+.++. ....||.||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~--~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN--EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS--S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc--cCCCCCCCCCCC
Confidence 7889887732 2223 78999999999887762 467999999864
No 77
>PHA03096 p28-like protein; Provisional
Probab=95.09 E-value=0.01 Score=52.96 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=34.0
Q ss_pred ccccccccCCCCc--------EEcccCCccCHhHHHHHHHhcCCCCCCCccccc
Q 027504 29 FECNICFELAQDP--------IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAV 74 (222)
Q Consensus 29 ~~C~ICl~~~~~p--------v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~ 74 (222)
-.|.||++...+. +...|-|.||..|+..|.........||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 6799999875432 335899999999999998865445566666554
No 78
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.01 E-value=0.012 Score=55.17 Aligned_cols=35 Identities=26% Similarity=0.685 Sum_probs=31.5
Q ss_pred CCCccccccccCCCCcEEcccCCccCHhHHHHHHH
Q 027504 26 AGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLH 60 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~ 60 (222)
++++.|+||...+++|++++|+|..|..|....+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 46789999999999999999999999999886554
No 79
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.93 E-value=0.025 Score=51.68 Aligned_cols=55 Identities=24% Similarity=0.588 Sum_probs=41.7
Q ss_pred CCCCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 21 NSANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 21 ~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.++.+++...|-||.+.+.-..++||+|..|.-|-.+.-.- -..+.|+.||....
T Consensus 54 addtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRAL-Y~~K~C~~CrTE~e 108 (493)
T COG5236 54 ADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRAL-YMQKGCPLCRTETE 108 (493)
T ss_pred ccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHH-HhccCCCccccccc
Confidence 44455667789999999988889999999999998653211 13568999998543
No 80
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.019 Score=53.06 Aligned_cols=54 Identities=26% Similarity=0.503 Sum_probs=41.3
Q ss_pred CCccccccccCCC---CcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027504 27 GGFECNICFELAQ---DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 27 ~~~~C~ICl~~~~---~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
+-|.|||=.+... .|+.+.|||+.|..-+.+..+....+.+||.|-......+.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~ 389 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDT 389 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhc
Confidence 5578999776553 37999999999999999988754445899999776554433
No 81
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.54 E-value=0.011 Score=52.81 Aligned_cols=54 Identities=30% Similarity=0.632 Sum_probs=39.6
Q ss_pred CCCCCccccccccCCCCc---EEcccCCccCHhHHHHHHHhc--------------------CCCCCCCcccccccc
Q 027504 24 NDAGGFECNICFELAQDP---IVTLCGHLFCWPCLYRWLHHH--------------------SHSQECPVCKAVVQE 77 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~p---v~l~CGH~FC~~Cl~~wl~~~--------------------~~~~~CPvCr~~v~~ 77 (222)
+.-..-.|.||+--+.+. .+++|-|.++..|+.++|..- .-...||+||..+..
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 344567799999766543 568999999999998877531 113579999998763
No 82
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.029 Score=49.91 Aligned_cols=47 Identities=26% Similarity=0.731 Sum_probs=35.4
Q ss_pred cccccccC-CCCc----EEcccCCccCHhHHHHHHHhcCCCCCCCccccccccc
Q 027504 30 ECNICFEL-AQDP----IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEE 78 (222)
Q Consensus 30 ~C~ICl~~-~~~p----v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~ 78 (222)
.|++|... +.+| .+-+|||..|.+|+...... +...||.|-..+..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~--g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL--GPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc--CCCCCCcccchhhhc
Confidence 59999853 4444 22399999999999988774 567999998766543
No 83
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.37 E-value=0.053 Score=44.38 Aligned_cols=50 Identities=18% Similarity=0.460 Sum_probs=38.2
Q ss_pred CCCccccccccCCCCcEEcccCCc-----cCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 26 AGGFECNICFELAQDPIVTLCGHL-----FCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~CGH~-----FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
..+.+|-||.+... +...||... -|.+|+.+|+... +...|+.|++...-
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s-~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTS-KNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcC-CCCcccccCCeEEE
Confidence 45568999998864 344576653 4899999999964 57899999998763
No 84
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=94.31 E-value=0.0087 Score=58.86 Aligned_cols=51 Identities=27% Similarity=0.723 Sum_probs=42.9
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
...+|+||...+.+|+.+.|-|.||..|+...+........||+|+..+..
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 468899999999999999999999999998766654457899999976553
No 85
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.14 E-value=0.028 Score=59.29 Aligned_cols=54 Identities=30% Similarity=0.589 Sum_probs=41.2
Q ss_pred CCCCCccccccccCC---CCcEEcccCCccCHhHHHHHHHhcC-------CCCCCCcccccccc
Q 027504 24 NDAGGFECNICFELA---QDPIVTLCGHLFCWPCLYRWLHHHS-------HSQECPVCKAVVQE 77 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~---~~pv~l~CGH~FC~~Cl~~wl~~~~-------~~~~CPvCr~~v~~ 77 (222)
..+.+..|-||+... ...+.+.|+|.|+..|....|+.+= +-..||+|+.++..
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 345566799999764 3347799999999999998887531 23689999998874
No 86
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.11 E-value=0.044 Score=35.15 Aligned_cols=40 Identities=25% Similarity=0.664 Sum_probs=24.4
Q ss_pred ccccccCCCCcEEc---ccCCccCHhHHHHHHHhcCCCCCCCcc
Q 027504 31 CNICFELAQDPIVT---LCGHLFCWPCLYRWLHHHSHSQECPVC 71 (222)
Q Consensus 31 C~ICl~~~~~pv~l---~CGH~FC~~Cl~~wl~~~~~~~~CPvC 71 (222)
|.+|.+.....+.= .|+-.++..|+..+++.+. ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-CCCCcCC
Confidence 77899988877763 5999999999999998654 3379987
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.79 E-value=0.037 Score=50.44 Aligned_cols=49 Identities=24% Similarity=0.617 Sum_probs=34.4
Q ss_pred cccccccCCC--CcEE--cccCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027504 30 ECNICFELAQ--DPIV--TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 30 ~C~ICl~~~~--~pv~--l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
.|++|++.+. |.-. -+||-..|.-|....-+. -.-+||.||....++.+
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~--lngrcpacrr~y~denv 68 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN--LNGRCPACRRKYDDENV 68 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhh--ccCCChHhhhhccccce
Confidence 3999999763 3333 378888788887654332 34689999998887654
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=0.033 Score=55.82 Aligned_cols=42 Identities=31% Similarity=0.689 Sum_probs=35.5
Q ss_pred CccccccccCCCCcEE-cccCCccCHhHHHHHHHhcCCCCCCCcccccc
Q 027504 28 GFECNICFELAQDPIV-TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVV 75 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~-l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v 75 (222)
...|..|-..+.-|++ ..|||.||..|+. . ....||.|+...
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~---~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---D---KEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc---c---CcccCCccchhh
Confidence 3579999999999977 6999999999997 2 567999998843
No 89
>PHA02862 5L protein; Provisional
Probab=93.20 E-value=0.067 Score=43.15 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=36.9
Q ss_pred ccccccccCCCCcEEcccCCc-----cCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 29 FECNICFELAQDPIVTLCGHL-----FCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~l~CGH~-----FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
..|=||.+.-.+. ..||... -|..|+.+|+.. +.+..|+.|+.+..-
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~-S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINY-SKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhc-CCCcCccCCCCeEEE
Confidence 4699999986554 4677653 589999999975 468899999998764
No 90
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.98 E-value=0.073 Score=35.20 Aligned_cols=46 Identities=24% Similarity=0.670 Sum_probs=23.8
Q ss_pred CccccccccCCCCcEEc-ccCCccCHhHHHHHHHhc--CCCCCCCccccc
Q 027504 28 GFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHH--SHSQECPVCKAV 74 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~--~~~~~CPvCr~~ 74 (222)
.+.|+|....+..|+.. .|.|.-|.+- ..|++.. .....||+|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 36899999999999884 9999977553 3454422 345789999863
No 91
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.84 E-value=0.12 Score=47.67 Aligned_cols=35 Identities=23% Similarity=0.756 Sum_probs=26.7
Q ss_pred cCCccCHhHHHHHHHhcC----------CCCCCCccccccccccc
Q 027504 46 CGHLFCWPCLYRWLHHHS----------HSQECPVCKAVVQEEKL 80 (222)
Q Consensus 46 CGH~FC~~Cl~~wl~~~~----------~~~~CPvCr~~v~~~~l 80 (222)
|-...|..|+.+|+..++ ++..||+||+.+.-.++
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 555678999999988542 35799999999875554
No 92
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.81 E-value=0.079 Score=34.55 Aligned_cols=40 Identities=30% Similarity=0.944 Sum_probs=25.7
Q ss_pred ccccccCCCC--cEEcccCCc-----cCHhHHHHHHHhcCCCCCCCcc
Q 027504 31 CNICFELAQD--PIVTLCGHL-----FCWPCLYRWLHHHSHSQECPVC 71 (222)
Q Consensus 31 C~ICl~~~~~--pv~l~CGH~-----FC~~Cl~~wl~~~~~~~~CPvC 71 (222)
|-||++...+ +.+.||.-. .|..||.+|+..+ ...+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~-~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRES-GNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHH-T-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhc-CCCcCCCC
Confidence 6788876543 567787653 5889999999974 45679887
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.48 E-value=0.018 Score=59.91 Aligned_cols=48 Identities=38% Similarity=0.901 Sum_probs=40.6
Q ss_pred CCCCCccccccccCCC-CcEEcccCCccCHhHHHHHHHhcCCCCCCCccccc
Q 027504 24 NDAGGFECNICFELAQ-DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAV 74 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~-~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~ 74 (222)
+.....-|.||++.+. ...+..|||.+|..|...|+.. +..||.|+..
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~---~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA---SSRCPICKSI 1197 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH---hccCcchhhh
Confidence 4456678999999998 5677899999999999999995 4589999853
No 94
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=91.97 E-value=0.083 Score=53.08 Aligned_cols=51 Identities=29% Similarity=0.785 Sum_probs=39.0
Q ss_pred CCCccccccccCCC--CcEE--cccCCccCHhHHHHHHHhc----CCCCCCCccccccc
Q 027504 26 AGGFECNICFELAQ--DPIV--TLCGHLFCWPCLYRWLHHH----SHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~--~pv~--l~CGH~FC~~Cl~~wl~~~----~~~~~CPvCr~~v~ 76 (222)
...++|.||.+.+. .++- ..|=|+|+..||.+|.+.. ....+||.|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 35678999999875 3443 3799999999999999852 23578999986544
No 95
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.13 Score=48.48 Aligned_cols=62 Identities=34% Similarity=0.705 Sum_probs=45.6
Q ss_pred CCCCCccccccccCCCC-cEEcccCCccCHhHHHHHHHhcC---C--CCCCCc--ccccccccccccccC
Q 027504 24 NDAGGFECNICFELAQD-PIVTLCGHLFCWPCLYRWLHHHS---H--SQECPV--CKAVVQEEKLVPLYG 85 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~-pv~l~CGH~FC~~Cl~~wl~~~~---~--~~~CPv--Cr~~v~~~~l~p~~~ 85 (222)
......+|.||.+.... .+.+.|||.||..|+..++..+- . ..+||. |++.+..+.+..+..
T Consensus 66 ~~~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~s 135 (444)
T KOG1815|consen 66 KKKGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLVS 135 (444)
T ss_pred CCCccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeecC
Confidence 34567899999998886 55679999999999999988541 1 146765 888877665544433
No 96
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.84 E-value=0.065 Score=39.85 Aligned_cols=33 Identities=18% Similarity=0.550 Sum_probs=26.2
Q ss_pred CCCCCccccccccCCCCcEE--cccCCccCHhHHH
Q 027504 24 NDAGGFECNICFELAQDPIV--TLCGHLFCWPCLY 56 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~--l~CGH~FC~~Cl~ 56 (222)
..++...|++|...+.+.+. .||||.+|..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34556779999998877643 5999999999975
No 97
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=0.057 Score=52.83 Aligned_cols=42 Identities=31% Similarity=0.718 Sum_probs=32.0
Q ss_pred CCccccccccCC----CCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccc
Q 027504 27 GGFECNICFELA----QDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAV 74 (222)
Q Consensus 27 ~~~~C~ICl~~~----~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~ 74 (222)
+-+.|+||+..+ ..||.+-|||+.|..|+..... ..|| |+.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn-----~scp-~~~D 55 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN-----ASCP-TKRD 55 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh-----ccCC-CCcc
Confidence 346799997655 4689999999999999976444 4788 6553
No 98
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.38 E-value=0.097 Score=41.70 Aligned_cols=33 Identities=36% Similarity=0.882 Sum_probs=26.4
Q ss_pred CccccccccCCCC--cEE-cccC------CccCHhHHHHHHH
Q 027504 28 GFECNICFELAQD--PIV-TLCG------HLFCWPCLYRWLH 60 (222)
Q Consensus 28 ~~~C~ICl~~~~~--pv~-l~CG------H~FC~~Cl~~wl~ 60 (222)
..+|.||++.+.+ .|+ +.|| |.||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6899999999877 555 4665 5699999999954
No 99
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.03 E-value=0.13 Score=45.80 Aligned_cols=44 Identities=32% Similarity=0.751 Sum_probs=35.6
Q ss_pred CCccccccccCC----CCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccc
Q 027504 27 GGFECNICFELA----QDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKA 73 (222)
Q Consensus 27 ~~~~C~ICl~~~----~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~ 73 (222)
.+..||||.+.+ .++.+++|||..+..|+..... ....||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~---~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMIC---EGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhc---cCCCCCcccc
Confidence 344499999865 4567789999999999988877 3389999998
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.15 Score=47.44 Aligned_cols=51 Identities=29% Similarity=0.672 Sum_probs=36.4
Q ss_pred CCccccccccCCCCc----EEcccCCccCHhHHHHHHHhc---CCCCCCCc--ccccccc
Q 027504 27 GGFECNICFELAQDP----IVTLCGHLFCWPCLYRWLHHH---SHSQECPV--CKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~~wl~~~---~~~~~CPv--Cr~~v~~ 77 (222)
...+|.||....... .+..|+|.||..|+.++++.+ .....||. |...+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 467899999433322 246899999999999999865 33567766 6665554
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.75 E-value=0.069 Score=46.56 Aligned_cols=52 Identities=23% Similarity=0.570 Sum_probs=37.4
Q ss_pred CCCCccccccccC-CCCc-EE-c--c-cCCccCHhHHHHHHHhcCCCCCCC--ccccccccc
Q 027504 25 DAGGFECNICFEL-AQDP-IV-T--L-CGHLFCWPCLYRWLHHHSHSQECP--VCKAVVQEE 78 (222)
Q Consensus 25 ~~~~~~C~ICl~~-~~~p-v~-l--~-CGH~FC~~Cl~~wl~~~~~~~~CP--vCr~~v~~~ 78 (222)
...+..||||... +-+| +. + | |-|..|.+|+.+.+.. +...|| -|.+-+...
T Consensus 7 ~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~--GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 7 EMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR--GPAQCPYKGCGKILRKI 66 (314)
T ss_pred hhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC--CCCCCCCccHHHHHHHh
Confidence 3456689999854 4444 22 2 4 9999999999998874 678999 687755543
No 102
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=0.12 Score=44.22 Aligned_cols=39 Identities=28% Similarity=0.676 Sum_probs=30.8
Q ss_pred ccccccCCCCcEEcccCCc-cCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 31 CNICFELAQDPIVTLCGHL-FCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 31 C~ICl~~~~~pv~l~CGH~-FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
|-.|.+.-..-+.+||-|+ +|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-------CccCCCCcChhh
Confidence 9999887777667899996 89999653 347999988654
No 103
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=90.15 E-value=0.1 Score=34.34 Aligned_cols=44 Identities=27% Similarity=0.795 Sum_probs=24.4
Q ss_pred ccccccccCCCCcEEccc-CCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 29 FECNICFELAQDPIVTLC-GHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~l~C-GH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
+-|.-|+ +.+.-.+.| .|-.|..|+...+. .+..||+|+.++..
T Consensus 3 ~nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~---~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCW--FANKGLIKCSDHYLCLNCLTLMLS---RSDRCPICGKPLPT 47 (50)
T ss_dssp ----SS---S--SSEEE-SS-EEEHHHHHHT-S---SSSEETTTTEE---
T ss_pred ccChhhh--hcCCCeeeecchhHHHHHHHHHhc---cccCCCcccCcCcc
Confidence 3466666 334445566 67789999988777 67799999998764
No 104
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=89.72 E-value=0.28 Score=49.40 Aligned_cols=55 Identities=22% Similarity=0.588 Sum_probs=41.5
Q ss_pred CCCCccccccccCC--CCcEEcccCCc-----cCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027504 25 DAGGFECNICFELA--QDPIVTLCGHL-----FCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 25 ~~~~~~C~ICl~~~--~~pv~l~CGH~-----FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
.+++..|.||...- .+|..-||... .|.+|+.+|+.. ++..+|-.|+.++.-+++
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~-s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMEC-SGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhc-CCCcceeeecceeeeeee
Confidence 34557899998654 45555677765 589999999984 568899999998876554
No 105
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.67 E-value=0.23 Score=41.60 Aligned_cols=34 Identities=35% Similarity=0.719 Sum_probs=26.2
Q ss_pred cccCCccCHhHHHHHHHhc--CC------CCCCCcccccccc
Q 027504 44 TLCGHLFCWPCLYRWLHHH--SH------SQECPVCKAVVQE 77 (222)
Q Consensus 44 l~CGH~FC~~Cl~~wl~~~--~~------~~~CPvCr~~v~~ 77 (222)
+.||..|+.-|+..||+.- ++ --.||.|..++..
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4799999999999999831 11 1489999887763
No 106
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.54 E-value=0.35 Score=48.59 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=40.9
Q ss_pred CCCCCCCCCCccccccccCCCCcEE-------cccCCccCHhHHHHHHHhc---CCCCCCCccccccc
Q 027504 19 VGNSANDAGGFECNICFELAQDPIV-------TLCGHLFCWPCLYRWLHHH---SHSQECPVCKAVVQ 76 (222)
Q Consensus 19 ~~~~~~~~~~~~C~ICl~~~~~pv~-------l~CGH~FC~~Cl~~wl~~~---~~~~~CPvCr~~v~ 76 (222)
++.+........|.||...+.+++- ..|+|.+|..||..|...- .....|+.|...|.
T Consensus 87 sE~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 87 DEVDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 4444555566778888877776432 3599999999999998742 23457788887655
No 107
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=0.57 Score=41.91 Aligned_cols=37 Identities=27% Similarity=0.758 Sum_probs=32.1
Q ss_pred CCCccccccccCCCCcEEccc----CCccCHhHHHHHHHhc
Q 027504 26 AGGFECNICFELAQDPIVTLC----GHLFCWPCLYRWLHHH 62 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l~C----GH~FC~~Cl~~wl~~~ 62 (222)
...+.|.+|.|.++|-....| .|-||.+|-.+.++.+
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 455889999999999877766 8999999999999876
No 108
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.34 E-value=0.29 Score=44.32 Aligned_cols=54 Identities=26% Similarity=0.495 Sum_probs=41.0
Q ss_pred CCccccccccCCC---CcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccccccc
Q 027504 27 GGFECNICFELAQ---DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 27 ~~~~C~ICl~~~~---~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l 80 (222)
.-+.||+=.+... .|+.+.|||+.-..-+.+..+......+||.|-..-...+.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~ 391 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENI 391 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhh
Confidence 5678998776553 47889999999999998877765557899999765544433
No 109
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.34 E-value=0.58 Score=41.14 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=44.3
Q ss_pred CCCccccccccCCCCc----EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCC
Q 027504 26 AGGFECNICFELAQDP----IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRG 87 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~ 87 (222)
...+.|+|---.+... ..-.|||+|-..-+.+.- ...|++|.+.+..++++++-+..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-----as~C~~C~a~y~~~dvIvlNg~~ 169 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-----ASVCHVCGAAYQEDDVIVLNGTE 169 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh-----hccccccCCcccccCeEeeCCCH
Confidence 4568899977666554 335999999998887643 35899999999999999887643
No 110
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.32 E-value=0.37 Score=42.27 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhc
Q 027504 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHH 62 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~ 62 (222)
.-..|.+|+....+||+++=||+||..||.+++..+
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 344578999999999999999999999999887643
No 111
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=0.21 Score=45.07 Aligned_cols=41 Identities=29% Similarity=0.675 Sum_probs=26.7
Q ss_pred ccccccCCC-CcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 31 CNICFELAQ-DPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 31 C~ICl~~~~-~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
|.-|--.+. -...++|.|+||.+|... + ..+.||.|...|.
T Consensus 93 Cd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~---~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 93 CDRCDFPIAIYGRMIPCKHVFCLECARS--D---SDKICPLCDDRVQ 134 (389)
T ss_pred ecccCCcceeeecccccchhhhhhhhhc--C---ccccCcCcccHHH
Confidence 555533222 234579999999999752 2 3568999977554
No 112
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.43 E-value=0.31 Score=49.35 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=27.2
Q ss_pred CCCCccccccccCCC-Cc-EEcccCCccCHhHHHHHHH
Q 027504 25 DAGGFECNICFELAQ-DP-IVTLCGHLFCWPCLYRWLH 60 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~-~p-v~l~CGH~FC~~Cl~~wl~ 60 (222)
.+....|.+|...+. .| ++.+|||.|++.|+.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 345567999987653 34 6679999999999987654
No 113
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.90 E-value=0.55 Score=42.18 Aligned_cols=35 Identities=26% Similarity=0.665 Sum_probs=26.6
Q ss_pred cCCccCHhHHHHHHHhc----------CCCCCCCccccccccccc
Q 027504 46 CGHLFCWPCLYRWLHHH----------SHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 46 CGH~FC~~Cl~~wl~~~----------~~~~~CPvCr~~v~~~~l 80 (222)
|....|.+|+.+|...+ .++..||.||+.+.-.++
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 66678899999987633 246799999998875554
No 114
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.80 E-value=0.73 Score=40.64 Aligned_cols=55 Identities=27% Similarity=0.582 Sum_probs=39.5
Q ss_pred CCCCCCCccccccccCCCCcEE----cccCC-----ccCHhHHHHHHHhcC-----CCCCCCccccccc
Q 027504 22 SANDAGGFECNICFELAQDPIV----TLCGH-----LFCWPCLYRWLHHHS-----HSQECPVCKAVVQ 76 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv~----l~CGH-----~FC~~Cl~~wl~~~~-----~~~~CPvCr~~v~ 76 (222)
.++.+.+..|-||+..-+|... -||-. --|..||+.|+..+. ....||.|+....
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3455567789999988777543 26643 368999999998653 2468999988654
No 115
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.26 E-value=2.7 Score=37.01 Aligned_cols=49 Identities=24% Similarity=0.664 Sum_probs=36.7
Q ss_pred CccccccccCCCC----cEEcccCCc-----cCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 28 GFECNICFELAQD----PIVTLCGHL-----FCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 28 ~~~C~ICl~~~~~----pv~l~CGH~-----FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
...|-||.+.... +...+|... .+..|+..|...+ +...|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~-~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIK-GNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccc-cCeeeeccccccee
Confidence 4789999986543 456676543 5899999999864 57899999886653
No 116
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=69.98 E-value=2.4 Score=36.47 Aligned_cols=46 Identities=24% Similarity=0.550 Sum_probs=36.0
Q ss_pred CCccccccccCCCCcEE-cccCCccCHhHHHHHHHhcCCCCCCCcccccc
Q 027504 27 GGFECNICFELAQDPIV-TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVV 75 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v 75 (222)
.-..|++|.......+. -.|+-.++.+|+.+++. +...||.|.--.
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q---~~~~cphc~d~w 226 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQ---RRDICPHCGDLW 226 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhc---ccCcCCchhccc
Confidence 34579999998766554 48888899999999998 467899995433
No 117
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=67.33 E-value=3.7 Score=41.11 Aligned_cols=52 Identities=29% Similarity=0.592 Sum_probs=39.1
Q ss_pred CCCCCCCccccccccCCCCcE----------EcccCCcc--------------------CHhHHHHHHH-----hcCCCC
Q 027504 22 SANDAGGFECNICFELAQDPI----------VTLCGHLF--------------------CWPCLYRWLH-----HHSHSQ 66 (222)
Q Consensus 22 ~~~~~~~~~C~ICl~~~~~pv----------~l~CGH~F--------------------C~~Cl~~wl~-----~~~~~~ 66 (222)
.....+-..|.-|++.+.||. -+.||..| |..|..++-. .|....
T Consensus 95 ~~I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~ 174 (750)
T COG0068 95 TQIPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPI 174 (750)
T ss_pred cccCCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccc
Confidence 344556788999999988872 25789887 9999988754 234568
Q ss_pred CCCcccc
Q 027504 67 ECPVCKA 73 (222)
Q Consensus 67 ~CPvCr~ 73 (222)
.||.|.=
T Consensus 175 aCp~CGP 181 (750)
T COG0068 175 ACPKCGP 181 (750)
T ss_pred cCcccCC
Confidence 9999965
No 118
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=65.66 E-value=8 Score=26.09 Aligned_cols=30 Identities=30% Similarity=0.614 Sum_probs=24.5
Q ss_pred CCccccccccCC--CCcEEc--ccCCccCHhHHH
Q 027504 27 GGFECNICFELA--QDPIVT--LCGHLFCWPCLY 56 (222)
Q Consensus 27 ~~~~C~ICl~~~--~~pv~l--~CGH~FC~~Cl~ 56 (222)
....|++|-+.+ .+.++. .||-.++..|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 456799999999 566664 899999999964
No 119
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.17 E-value=4.2 Score=29.13 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=28.8
Q ss_pred ccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCCC
Q 027504 45 LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRGK 88 (222)
Q Consensus 45 ~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~~ 88 (222)
.=-|.||..|....+. -.||.|.-.+..+.+.|...+.+
T Consensus 26 tfEcTFCadCae~~l~-----g~CPnCGGelv~RP~RPaa~L~r 64 (84)
T COG3813 26 TFECTFCADCAENRLH-----GLCPNCGGELVARPIRPAAKLAR 64 (84)
T ss_pred EEeeehhHhHHHHhhc-----CcCCCCCchhhcCcCChHHHHhh
Confidence 3357899999987776 38999999888777666544433
No 120
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=64.62 E-value=10 Score=27.47 Aligned_cols=51 Identities=29% Similarity=0.578 Sum_probs=20.3
Q ss_pred CCccccccccCCC-----CcEE--cccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 27 GGFECNICFELAQ-----DPIV--TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 27 ~~~~C~ICl~~~~-----~pv~--l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
..-.|.||-|..- ++-+ -.|+-..|.+|..--.+ ...+.||.|+......+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk--eg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK--EGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH--TS-SB-TTT--B----T
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh--cCcccccccCCCccccc
Confidence 3456999988652 2222 26888889999864333 46789999997766443
No 121
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.22 E-value=0.6 Score=43.39 Aligned_cols=46 Identities=26% Similarity=0.638 Sum_probs=36.8
Q ss_pred ccccccccCCCCc----EEcccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 29 FECNICFELAQDP----IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 29 ~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
-.|.||.+.++.- ..+-|||.++..||.+|+.. ...||.|+..+..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~---~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT---KRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH---HHHhHHHHhhhhh
Confidence 4588998776543 34689999999999999995 4589999987764
No 122
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=63.67 E-value=7.8 Score=36.78 Aligned_cols=54 Identities=22% Similarity=0.443 Sum_probs=47.6
Q ss_pred cccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCC
Q 027504 30 ECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGR 86 (222)
Q Consensus 30 ~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~ 86 (222)
-|.|--++.++||+. .-||+|=..-|.+++. ..-+||+-.++++.++++++..-
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~---e~G~DPIt~~pLs~eelV~Ik~~ 56 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIA---ETGKDPITNEPLSIEELVEIKVP 56 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHH---HcCCCCCCCCcCCHHHeeecccc
Confidence 599999999999997 5899999999999999 45589999999999999887553
No 123
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=62.47 E-value=5.6 Score=36.26 Aligned_cols=47 Identities=26% Similarity=0.543 Sum_probs=34.9
Q ss_pred CCCccccccccCCC--CcEE--cccCCccCHhHHHHHHHhcCCCCCCCcccccc
Q 027504 26 AGGFECNICFELAQ--DPIV--TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVV 75 (222)
Q Consensus 26 ~~~~~C~ICl~~~~--~pv~--l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v 75 (222)
...-.|+||-+.+. +.-. .+||+..|+.|+..... ....||.||...
T Consensus 247 ~v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~---~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 247 SVPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD---GDGRCPGCRKPY 297 (327)
T ss_pred ccCCCCCCCCCcccccccccccccccccchhhhhhcccc---cCCCCCccCCcc
Confidence 44567999998662 2222 47899999999988777 456899999543
No 124
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=61.32 E-value=3.9 Score=36.04 Aligned_cols=43 Identities=21% Similarity=0.438 Sum_probs=35.1
Q ss_pred CccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCcc
Q 027504 28 GFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVC 71 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvC 71 (222)
++.|||-...+..|++. .|||+|-..-|..++.. .....||+-
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~-~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCD-EITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhcc-Cceeecccc
Confidence 56799988888999875 99999999999988873 236789983
No 125
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=60.74 E-value=4.6 Score=23.05 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=4.6
Q ss_pred cccccccCC
Q 027504 30 ECNICFELA 38 (222)
Q Consensus 30 ~C~ICl~~~ 38 (222)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 355555544
No 126
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=59.52 E-value=17 Score=38.16 Aligned_cols=49 Identities=31% Similarity=0.757 Sum_probs=35.0
Q ss_pred ccccccccCCCC-----cEE--cccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 29 FECNICFELAQD-----PIV--TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 29 ~~C~ICl~~~~~-----pv~--l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
-.|.||-|..-- +-+ -.||--.|.+|.+ + +.+.+++.||.||...+.-|
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-Y-Er~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-Y-ERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhh-h-hhhcCCccCCccCCchhhhc
Confidence 479999987532 222 2688789999984 2 33347899999999877544
No 127
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.18 E-value=5.8 Score=40.09 Aligned_cols=39 Identities=28% Similarity=0.812 Sum_probs=27.5
Q ss_pred ccccccccCCCCc--EEcccCCccCHhHHHHHHHhcCCCCCCCc
Q 027504 29 FECNICFELAQDP--IVTLCGHLFCWPCLYRWLHHHSHSQECPV 70 (222)
Q Consensus 29 ~~C~ICl~~~~~p--v~l~CGH~FC~~Cl~~wl~~~~~~~~CPv 70 (222)
+.|+||--....- +-..|||+.+.+|...|++.. -.||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g---d~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG---DVCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcC---CcCCC
Confidence 4466665433322 235899999999999999953 48887
No 128
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.08 E-value=4.8 Score=37.50 Aligned_cols=41 Identities=32% Similarity=0.736 Sum_probs=27.4
Q ss_pred CccccccccCCCC-----cEEcccCCccCHhHHHHHHHhcCCCCCCCcc
Q 027504 28 GFECNICFELAQD-----PIVTLCGHLFCWPCLYRWLHHHSHSQECPVC 71 (222)
Q Consensus 28 ~~~C~ICl~~~~~-----pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvC 71 (222)
-..|++|.-.+.. -++-.|||-|||.|...|.. ....|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~---~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT---HNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhh---CCccccCc
Confidence 4568888765432 13335999999999999877 33445443
No 129
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=59.02 E-value=0.36 Score=34.30 Aligned_cols=41 Identities=22% Similarity=0.486 Sum_probs=22.2
Q ss_pred CccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 28 GFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
+..||.|...+..- =||..|..|-..+.. ...||.|.+.+.
T Consensus 1 e~~CP~C~~~L~~~----~~~~~C~~C~~~~~~----~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----GGHYHCEACQKDYKK----EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEE----TTEEEETTT--EEEE----EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEEe----CCEEECcccccccee----cccCCCcccHHH
Confidence 35799998764322 278888889875443 458999988776
No 130
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=57.93 E-value=7 Score=29.10 Aligned_cols=37 Identities=27% Similarity=0.802 Sum_probs=29.0
Q ss_pred CccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 28 GFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 28 ~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.-.|.||...+..+ ||.||..|.++ .-.|..|.+.+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-------kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-------KGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-------cCcccccCCeec
Confidence 34799998877665 89999999763 348999988775
No 131
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.05 E-value=9.9 Score=36.88 Aligned_cols=50 Identities=26% Similarity=0.654 Sum_probs=37.8
Q ss_pred CCCCCCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 23 ANDAGGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
......-.|.||.+.. ...+++|- +..|+.+|+.. +..||.|...+..++
T Consensus 474 ~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~---~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM-SARITPCS---HALCLRKWLYV---QEVCPLCHTYMKEDD 523 (543)
T ss_pred hhhcccCcchHHHHHH-Hhcccccc---chhHHHhhhhh---ccccCCCchhhhccc
Confidence 4445567799999988 66667887 57899999983 458999998877544
No 132
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=54.38 E-value=8 Score=27.15 Aligned_cols=13 Identities=38% Similarity=1.104 Sum_probs=9.5
Q ss_pred ccCHhHHHHHHHh
Q 027504 49 LFCWPCLYRWLHH 61 (222)
Q Consensus 49 ~FC~~Cl~~wl~~ 61 (222)
.||..||.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 133
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=54.07 E-value=9.7 Score=37.82 Aligned_cols=55 Identities=25% Similarity=0.496 Sum_probs=36.9
Q ss_pred CCCCccccccccCCCCcEE-cccCCccCHhHHHHHHH--hcCCCCCCCccccccccccc
Q 027504 25 DAGGFECNICFELAQDPIV-TLCGHLFCWPCLYRWLH--HHSHSQECPVCKAVVQEEKL 80 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~-l~CGH~FC~~Cl~~wl~--~~~~~~~CPvCr~~v~~~~l 80 (222)
..-.+.|+|+...++-|.. ..|.|+-|..-+. +++ .+.....||||.+....+.+
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCccccccch
Confidence 3356789999888777765 5888877766442 222 22346799999987665443
No 134
>PLN02400 cellulose synthase
Probab=53.49 E-value=12 Score=39.29 Aligned_cols=49 Identities=29% Similarity=0.583 Sum_probs=35.1
Q ss_pred ccccccccCCCC-----cEE--cccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 29 FECNICFELAQD-----PIV--TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 29 ~~C~ICl~~~~~-----pv~--l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
-.|.||-|..-- +-+ -.|+---|.+|.+ .+.+.+++.||.||...+..|
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE--YERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYE--YERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhh--eecccCCccCcccCCcccccc
Confidence 479999987532 222 2677779999984 233457899999999887554
No 135
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.27 E-value=2.5 Score=37.34 Aligned_cols=46 Identities=28% Similarity=0.577 Sum_probs=35.2
Q ss_pred CCccccccccCCC------CcEEcc--------cCCccCHhHHHHHHHhcCCCCCCCccccc
Q 027504 27 GGFECNICFELAQ------DPIVTL--------CGHLFCWPCLYRWLHHHSHSQECPVCKAV 74 (222)
Q Consensus 27 ~~~~C~ICl~~~~------~pv~l~--------CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~ 74 (222)
....|.||...+. .|.++. |||..|..|+...+.... ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~--~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG--IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh--hcCCcccce
Confidence 3456999987665 244555 999999999999887543 899999874
No 136
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=53.22 E-value=11 Score=34.32 Aligned_cols=47 Identities=11% Similarity=-0.166 Sum_probs=35.7
Q ss_pred CCCCccccccccCCCCcEEcccCC-ccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 25 DAGGFECNICFELAQDPIVTLCGH-LFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~CGH-~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.-..++|-.|-+-+..-+..+|+| .||..|.. + +....||+|...+.
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~---s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--A---SASPTSSTCDHNDH 387 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhh--c---ccCCccccccccce
Confidence 335677888887777777789999 58999986 2 25679999987655
No 137
>PLN02189 cellulose synthase
Probab=52.27 E-value=16 Score=38.23 Aligned_cols=52 Identities=31% Similarity=0.585 Sum_probs=36.0
Q ss_pred CccccccccCCCC-----cEE--cccCCccCHhHHHHHHHhcCCCCCCCcccccccccccc
Q 027504 28 GFECNICFELAQD-----PIV--TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLV 81 (222)
Q Consensus 28 ~~~C~ICl~~~~~-----pv~--l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~ 81 (222)
.-.|.||-|.+-. +-+ -.|+--.|.+|.+- +.+.+++.||.||...+..+-.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey--er~eg~q~CpqCkt~Y~r~kgs 92 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY--ERREGTQNCPQCKTRYKRLKGS 92 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhh--hhhcCCccCcccCCchhhccCC
Confidence 3479999997531 222 25777899999953 2334689999999988755533
No 138
>PLN02436 cellulose synthase A
Probab=50.98 E-value=17 Score=38.17 Aligned_cols=50 Identities=30% Similarity=0.636 Sum_probs=35.0
Q ss_pred CccccccccCCC---Cc-EEc---ccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 28 GFECNICFELAQ---DP-IVT---LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 28 ~~~C~ICl~~~~---~p-v~l---~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
.-.|.||-|..- +. ... .|+--.|.+|.+- +.+.+++.||.||...+..+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey--er~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY--ERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhh--hhhcCCccCcccCCchhhcc
Confidence 347999998752 21 222 5777799999953 22346899999999887544
No 139
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=50.56 E-value=14 Score=34.68 Aligned_cols=58 Identities=22% Similarity=0.477 Sum_probs=38.5
Q ss_pred CCccccccccCCCCcE--EcccCCccCHhHHHHHHHhc-------------------CCC--CCCCcccccccccccccc
Q 027504 27 GGFECNICFELAQDPI--VTLCGHLFCWPCLYRWLHHH-------------------SHS--QECPVCKAVVQEEKLVPL 83 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv--~l~CGH~FC~~Cl~~wl~~~-------------------~~~--~~CPvCr~~v~~~~l~p~ 83 (222)
...+|+||+-++.... +.-|.-..|..|+.+.-... +.. ..||.|...-.....+++
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~~i 152 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYIKI 152 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeeecc
Confidence 4579999998765543 34789999999987543211 111 589999887665444444
Q ss_pred c
Q 027504 84 Y 84 (222)
Q Consensus 84 ~ 84 (222)
.
T Consensus 153 ~ 153 (482)
T KOG2789|consen 153 V 153 (482)
T ss_pred c
Confidence 4
No 140
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=48.77 E-value=23 Score=23.17 Aligned_cols=42 Identities=26% Similarity=0.574 Sum_probs=21.7
Q ss_pred CCccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 27 GGFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
+.+.||.|.+.+... ..+.| |....... .....||+|...+.
T Consensus 1 ~~f~CP~C~~~~~~~--~L~~H-----~~~~H~~~-~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES--SLVEH-----CEDEHRSE-SKNVVCPICSSRVT 42 (54)
T ss_pred CCcCCCCCCCccCHH--HHHHH-----HHhHCcCC-CCCccCCCchhhhh
Confidence 357899998733321 11111 22221111 23578999987544
No 141
>PLN02195 cellulose synthase A
Probab=46.74 E-value=23 Score=36.97 Aligned_cols=48 Identities=21% Similarity=0.437 Sum_probs=34.6
Q ss_pred CccccccccCCC-----CcEE--cccCCccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 28 GFECNICFELAQ-----DPIV--TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 28 ~~~C~ICl~~~~-----~pv~--l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
.-.|.||-|..- ++-+ -.|+--.|.+|.+ + +.+.+++.||.||...++
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-y-er~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-Y-EIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhh-h-hhhcCCccCCccCCcccc
Confidence 346999998653 2322 3788889999984 2 333478999999998873
No 142
>CHL00038 psbL photosystem II protein L
Probab=46.69 E-value=22 Score=22.02 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027504 204 LKNLLLLIGLFVILALL 220 (222)
Q Consensus 204 l~~~~~~~~~~~~~~l~ 220 (222)
|+|-+++.|++.|+.+.
T Consensus 13 LNRTSLy~GLLlifvl~ 29 (38)
T CHL00038 13 LNRTSLYWGLLLIFVLA 29 (38)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 78888887777766653
No 143
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=46.65 E-value=18 Score=24.58 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=19.4
Q ss_pred ccCHhHHHHHHHhcCCCCCCCcccccccc
Q 027504 49 LFCWPCLYRWLHHHSHSQECPVCKAVVQE 77 (222)
Q Consensus 49 ~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~ 77 (222)
+||..|....+. ..||.|.-.+..
T Consensus 30 TFC~~C~e~~l~-----~~CPNCgGelv~ 53 (57)
T PF06906_consen 30 TFCADCAETMLN-----GVCPNCGGELVR 53 (57)
T ss_pred cccHHHHHHHhc-----CcCcCCCCcccc
Confidence 699999998775 389999877654
No 144
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=45.95 E-value=2.9 Score=37.13 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCCCccccccccCCCCcEEccc-----CCccCHhHHHHHHHhcCCCCCCCccccc
Q 027504 25 DAGGFECNICFELAQDPIVTLC-----GHLFCWPCLYRWLHHHSHSQECPVCKAV 74 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~C-----GH~FC~~Cl~~wl~~~~~~~~CPvCr~~ 74 (222)
.+..-.||||-....-.++..= -|.+|.-|-.+|-. ....||.|...
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~---~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF---VRIKCPYCGNT 220 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE-----TTS-TTT---
T ss_pred CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee---cCCCCcCCCCC
Confidence 4455789999876554444322 45678999999976 45689999765
No 145
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.89 E-value=14 Score=32.03 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=18.2
Q ss_pred cCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 50 FCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 50 FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
-|.+|-.+.-+ ....||+||+...
T Consensus 196 ~C~sC~qqIHR---NAPiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHR---NAPICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhc---CCCCCcccccccc
Confidence 48888876544 6689999998655
No 146
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=44.51 E-value=6.7 Score=36.71 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=0.0
Q ss_pred CCCccccccccCCCC-------------c-EEcccCCccCHhHHHHHHHhc---CCCCCCCccccccc
Q 027504 26 AGGFECNICFELAQD-------------P-IVTLCGHLFCWPCLYRWLHHH---SHSQECPVCKAVVQ 76 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~-------------p-v~l~CGH~FC~~Cl~~wl~~~---~~~~~CPvCr~~v~ 76 (222)
.....||+=+..+.- | |-+.|||++=+ ..|-... .....||.||..-.
T Consensus 275 a~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 275 AGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp --------------------------------------------------------------------
T ss_pred hcCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCccccCC
Confidence 345668776655432 2 34789998654 3454322 13679999987544
No 147
>PLN02248 cellulose synthase-like protein
Probab=44.36 E-value=1.2e+02 Score=32.23 Aligned_cols=32 Identities=25% Similarity=0.591 Sum_probs=25.6
Q ss_pred ccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 45 LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 45 ~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
.|++..|..|...-++. .-.||-||...+..+
T Consensus 149 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKS---GGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhc---CCCCCCCcccccccc
Confidence 57888899999888874 559999999876433
No 148
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.07 E-value=17 Score=36.38 Aligned_cols=49 Identities=33% Similarity=0.621 Sum_probs=37.0
Q ss_pred cccccccCCCCcEEcccCC-ccCHhHHHHHHHhc---CCCCCCCccccccccc
Q 027504 30 ECNICFELAQDPIVTLCGH-LFCWPCLYRWLHHH---SHSQECPVCKAVVQEE 78 (222)
Q Consensus 30 ~C~ICl~~~~~pv~l~CGH-~FC~~Cl~~wl~~~---~~~~~CPvCr~~v~~~ 78 (222)
.|.||-....-...-.||| ..|..|..+..... .....||+|+..+...
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 5999988777777779999 89999998765432 1246789999876643
No 149
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=43.70 E-value=9.5 Score=25.11 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=7.1
Q ss_pred CCCcccccccccc
Q 027504 67 ECPVCKAVVQEEK 79 (222)
Q Consensus 67 ~CPvCr~~v~~~~ 79 (222)
.||+|...++.+.
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 8999999988543
No 150
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=43.34 E-value=4.1 Score=27.04 Aligned_cols=14 Identities=43% Similarity=1.345 Sum_probs=12.7
Q ss_pred ccCCccCHhHHHHH
Q 027504 45 LCGHLFCWPCLYRW 58 (222)
Q Consensus 45 ~CGH~FC~~Cl~~w 58 (222)
.|+|.||+.|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 79999999998877
No 151
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=42.96 E-value=26 Score=32.11 Aligned_cols=54 Identities=24% Similarity=0.567 Sum_probs=32.6
Q ss_pred CCCCccccccccCCC--------------Cc-----EEcccCCccCHhHHHHHHHh------cCCCCCCCccccccccc
Q 027504 25 DAGGFECNICFELAQ--------------DP-----IVTLCGHLFCWPCLYRWLHH------HSHSQECPVCKAVVQEE 78 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~--------------~p-----v~l~CGH~FC~~Cl~~wl~~------~~~~~~CPvCr~~v~~~ 78 (222)
...+.+||+|+.+-. |+ ...||||.--..=..-|.+. +.-...||.|-..+..+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 345788999986421 11 22489996555555445442 11246899998877643
No 152
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=42.24 E-value=39 Score=22.14 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027504 202 NVLKNLLLLIGLFVILALLF 221 (222)
Q Consensus 202 ~~l~~~~~~~~~~~~~~l~~ 221 (222)
.+|---|-|+.|+||+|+..
T Consensus 7 s~L~~~F~~lIC~Fl~~~~~ 26 (54)
T PF06716_consen 7 SYLLLAFGFLICLFLFCLVV 26 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34544555666666666654
No 153
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=41.76 E-value=15 Score=31.98 Aligned_cols=24 Identities=29% Similarity=0.747 Sum_probs=17.1
Q ss_pred cCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 50 FCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 50 FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
-|.+|-.+.-+ ....||+||+...
T Consensus 251 ~ClsChqqIHR---NAPiCPlCKaKsR 274 (286)
T KOG4451|consen 251 VCLSCHQQIHR---NAPICPLCKAKSR 274 (286)
T ss_pred HHHHHHHHHhc---CCCCCcchhhccc
Confidence 36677666444 6789999998654
No 154
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=41.66 E-value=46 Score=35.02 Aligned_cols=51 Identities=27% Similarity=0.651 Sum_probs=35.6
Q ss_pred CCccccccccCCCC-----cEE--cccCCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 27 GGFECNICFELAQD-----PIV--TLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 27 ~~~~C~ICl~~~~~-----pv~--l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
..-.|.||-|..-. +-+ -.|+--.|.+|.+- +.+.+++.||.|+.....-+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyey--e~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEY--ERSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhh--hhhcCCccCCccCCchhhhc
Confidence 34569999987532 222 26888899999942 33346889999999887544
No 155
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=40.85 E-value=9.1 Score=35.86 Aligned_cols=51 Identities=22% Similarity=0.565 Sum_probs=0.0
Q ss_pred CCccccccccCC--------------CC---c--EEcccCCccCHhHHHHHHHhc------CCCCCCCcccccccc
Q 027504 27 GGFECNICFELA--------------QD---P--IVTLCGHLFCWPCLYRWLHHH------SHSQECPVCKAVVQE 77 (222)
Q Consensus 27 ~~~~C~ICl~~~--------------~~---p--v~l~CGH~FC~~Cl~~wl~~~------~~~~~CPvCr~~v~~ 77 (222)
...+|++|+..- .| | ...||||.--.....-|.+.. .=...||.|-..+..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 478899998531 11 1 234899987777777676531 113689999988874
No 156
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=40.32 E-value=9.6 Score=34.49 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=32.1
Q ss_pred CCCccccccccCCCCcEEc----ccC--CccCHhHHHHHHHhcCCCCCCCccccc
Q 027504 26 AGGFECNICFELAQDPIVT----LCG--HLFCWPCLYRWLHHHSHSQECPVCKAV 74 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l----~CG--H~FC~~Cl~~wl~~~~~~~~CPvCr~~ 74 (222)
+..-.||||-....-.++. .=| +..|.-|-.+|-. ....||.|...
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~---~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY---VRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc---cCccCCCCCCC
Confidence 4456899998865444332 233 4578889999977 45699999863
No 157
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=39.93 E-value=5.7 Score=27.18 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=16.1
Q ss_pred CCCccccccccCCCCc---EE-cccCCccCHhHHHH
Q 027504 26 AGGFECNICFELAQDP---IV-TLCGHLFCWPCLYR 57 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~p---v~-l~CGH~FC~~Cl~~ 57 (222)
.+...|.+|...+.-- .. -.||++||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 3456799998877321 11 48999999999854
No 159
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=39.71 E-value=19 Score=30.98 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 027504 205 KNLLLLIGLFVILALLFW 222 (222)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~ 222 (222)
--.||+|+++||+|-|||
T Consensus 131 LIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344677888999998886
No 160
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=39.54 E-value=43 Score=24.42 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 027504 199 QADNVLKNLLLLIGLFVILALLF 221 (222)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~~~l~~ 221 (222)
-.|+.+=.+.|++++++++|+++
T Consensus 67 ~~D~~li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 67 KTDRILIFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhh
Confidence 34666666666777777777663
No 161
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.43 E-value=29 Score=35.19 Aligned_cols=44 Identities=23% Similarity=0.548 Sum_probs=28.9
Q ss_pred cccccccCCCCcEE--cccCCccCHhHHHHHHHhcCCCCCCCc--cccccc
Q 027504 30 ECNICFELAQDPIV--TLCGHLFCWPCLYRWLHHHSHSQECPV--CKAVVQ 76 (222)
Q Consensus 30 ~C~ICl~~~~~pv~--l~CGH~FC~~Cl~~wl~~~~~~~~CPv--Cr~~v~ 76 (222)
.|.+|-..++.-.+ --|||.-|.+|+++|+.. ...||. |.....
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~---~s~ca~~~C~~~c~ 828 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFK---ASPCAKSICPHLCH 828 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhc---CCCCccccCCcccc
Confidence 46666554443322 269999999999999984 446665 554443
No 162
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=39.34 E-value=37 Score=25.76 Aligned_cols=29 Identities=24% Similarity=0.632 Sum_probs=20.5
Q ss_pred CCccCHhHHHHHHHhc------CCCCCCCcccccc
Q 027504 47 GHLFCWPCLYRWLHHH------SHSQECPVCKAVV 75 (222)
Q Consensus 47 GH~FC~~Cl~~wl~~~------~~~~~CPvCr~~v 75 (222)
.=.||..||..+.... .....||.||..-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 5569999998765431 2457899998743
No 163
>PF14353 CpXC: CpXC protein
Probab=37.58 E-value=26 Score=26.99 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=26.3
Q ss_pred ccccccccCCCCcEEcccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 29 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 29 ~~C~ICl~~~~~pv~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
.+||-|.....-.+-+.-.-.--..=..+.+...-...+||.|.+.+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 578888776654433322222223333444432223579999998765
No 164
>PF12773 DZR: Double zinc ribbon
Probab=37.52 E-value=28 Score=22.13 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=16.0
Q ss_pred CccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 48 HLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 48 H~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
-.||..|=............||.|.+.+.
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 34555554443322234567888887655
No 165
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=35.21 E-value=21 Score=31.29 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=36.0
Q ss_pred CCccccccccCCCCcEE-cccCCccCHhHHHHHHHhcCCCCCCCc--cccccc
Q 027504 27 GGFECNICFELAQDPIV-TLCGHLFCWPCLYRWLHHHSHSQECPV--CKAVVQ 76 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~Cl~~wl~~~~~~~~CPv--Cr~~v~ 76 (222)
-+.+|+|-+....-|+. +.|.|.|-..-|..+++.. ....||. |.+.+.
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~-~trvcp~~~Csq~~~ 239 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVE-CTRVCPRLICSQKEV 239 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCC-ceeecchhhcchhee
Confidence 35779998887777766 5999999999999888732 2456776 644444
No 166
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=34.63 E-value=28 Score=20.11 Aligned_cols=34 Identities=18% Similarity=0.528 Sum_probs=18.8
Q ss_pred ccccccCCCCc--EEcccCCccCHhHHHHHHHhcCCCCCCCcccccc
Q 027504 31 CNICFELAQDP--IVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVV 75 (222)
Q Consensus 31 C~ICl~~~~~p--v~l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v 75 (222)
|..|.+.+.+. ++..=+..|+..|+ .|..|+..+
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~Cf-----------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPECF-----------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccCC-----------CCcccCCcC
Confidence 67777766653 33334555555543 466666544
No 167
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=34.31 E-value=18 Score=36.92 Aligned_cols=48 Identities=17% Similarity=0.387 Sum_probs=31.5
Q ss_pred CCccccccccCCCCc--EEcccCCccCHhHHHHHH---HhcCCCCCCCccccc
Q 027504 27 GGFECNICFELAQDP--IVTLCGHLFCWPCLYRWL---HHHSHSQECPVCKAV 74 (222)
Q Consensus 27 ~~~~C~ICl~~~~~p--v~l~CGH~FC~~Cl~~wl---~~~~~~~~CPvCr~~ 74 (222)
....|..|.....+- +-..||+.+|..|+..|. ..+.....|+.|+..
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~ 280 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLK 280 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHh
Confidence 345688888777654 335899999999999994 111123456655543
No 168
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=34.20 E-value=29 Score=23.04 Aligned_cols=25 Identities=32% Similarity=0.943 Sum_probs=13.9
Q ss_pred ccCCccCHhHHHHHHHhcCCCCCCCccc
Q 027504 45 LCGHLFCWPCLYRWLHHHSHSQECPVCK 72 (222)
Q Consensus 45 ~CGH~FC~~Cl~~wl~~~~~~~~CPvCr 72 (222)
.|++.||..|=. ++. ..-..||-|.
T Consensus 26 ~C~~~FC~dCD~-fiH--E~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDV-FIH--ETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHH-TTT--TTS-SSSTT-
T ss_pred CCCCccccCcCh-hhh--ccccCCcCCC
Confidence 689999999953 333 3456899884
No 169
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=34.11 E-value=27 Score=22.68 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=20.6
Q ss_pred ccccccccCCCCc----EEcccCCccCHhHHHHHH
Q 027504 29 FECNICFELAQDP----IVTLCGHLFCWPCLYRWL 59 (222)
Q Consensus 29 ~~C~ICl~~~~~p----v~l~CGH~FC~~Cl~~wl 59 (222)
..|.+|...+.-- .-..||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 3577887654321 224899999999986543
No 170
>COG5346 Predicted membrane protein [Function unknown]
Probab=32.37 E-value=57 Score=25.77 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027504 200 ADNVLKNLLLLIGLFVILALLF 221 (222)
Q Consensus 200 ~~~~l~~~~~~~~~~~~~~l~~ 221 (222)
....|.|+++.|+-++++|.++
T Consensus 85 ~~~~~tril~liFgi~LVvsi~ 106 (136)
T COG5346 85 LYAKLTRILLLIFGIFLVVSIF 106 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999998888888876
No 171
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.33 E-value=47 Score=34.61 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=48.5
Q ss_pred CCCCccccccccCCCCcEEcc-cCCccCHhHHHHHHHhcCCCCCCCcccccccccccccccCCC
Q 027504 25 DAGGFECNICFELAQDPIVTL-CGHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEKLVPLYGRG 87 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~l~-CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~l~p~~~~~ 87 (222)
..+++.=||-...+.|||++| -+++-|.+=|..++. ....=|.||..+..+.+.|+-...
T Consensus 867 vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlL---s~~tdPFNR~pLt~d~v~pn~eLK 927 (943)
T KOG2042|consen 867 VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLL---SDCTDPFNREPLTEDMVSPNEELK 927 (943)
T ss_pred CchhhhCccccccCCCCccCCcccccccHHHHHHHHh---cCCCCccccccCchhhcCCCHHHH
Confidence 334555677778889999998 899999999999888 455779999999999988875543
No 172
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.66 E-value=15 Score=33.20 Aligned_cols=50 Identities=24% Similarity=0.567 Sum_probs=38.6
Q ss_pred CCCCCccccccccCCCCcEEc-ccCCccCHhHHHHHHHhcCCCCCCCccccccc
Q 027504 24 NDAGGFECNICFELAQDPIVT-LCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQ 76 (222)
Q Consensus 24 ~~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~ 76 (222)
....+..|-||...+.-|... -|+|-||..|...|.. ....||.|+....
T Consensus 101 ~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~---~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFA---MGNDCPDCRGKIS 151 (324)
T ss_pred ccCCccceeeeeeeEEecccccCceeeeeecCCchhhh---hhhccchhhcCcC
Confidence 344556788888877777555 5999999999999988 4568999987655
No 173
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=30.39 E-value=20 Score=32.60 Aligned_cols=45 Identities=22% Similarity=0.505 Sum_probs=31.9
Q ss_pred CCCccccccccCCCCcEEc---ccC--CccCHhHHHHHHHhcCCCCCCCcccc
Q 027504 26 AGGFECNICFELAQDPIVT---LCG--HLFCWPCLYRWLHHHSHSQECPVCKA 73 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~pv~l---~CG--H~FC~~Cl~~wl~~~~~~~~CPvCr~ 73 (222)
+..-.||||-....-.++. .=| |+.|.-|-.+|-. ....||.|..
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~---~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV---VRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc---cCccCCCCCC
Confidence 4567899998876544331 233 3568889999977 4569999986
No 174
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK00753 psbL photosystem II reaction center L; Provisional
Probab=28.93 E-value=52 Score=20.51 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 027504 204 LKNLLLLIGLFVILAL 219 (222)
Q Consensus 204 l~~~~~~~~~~~~~~l 219 (222)
|+|-++++|++.|+-|
T Consensus 14 LNRTSLy~GlLlifvl 29 (39)
T PRK00753 14 LNRTSLYLGLLLVFVL 29 (39)
T ss_pred echhhHHHHHHHHHHH
Confidence 7888888877666554
No 176
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=27.52 E-value=1.4e+02 Score=19.49 Aligned_cols=13 Identities=8% Similarity=0.452 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 027504 208 LLLIGLFVILALL 220 (222)
Q Consensus 208 ~~~~~~~~~~~l~ 220 (222)
.+++.|+.++|+|
T Consensus 36 clilicllli~ii 48 (52)
T PF04272_consen 36 CLILICLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555554
No 177
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.47 E-value=33 Score=28.10 Aligned_cols=27 Identities=22% Similarity=0.623 Sum_probs=21.5
Q ss_pred CCccCHhHHHHHHHhcCCCCCCCcccccccccc
Q 027504 47 GHLFCWPCLYRWLHHHSHSQECPVCKAVVQEEK 79 (222)
Q Consensus 47 GH~FC~~Cl~~wl~~~~~~~~CPvCr~~v~~~~ 79 (222)
-+-||..|=.+-+. .||.|..++.-+.
T Consensus 27 ~~~fC~kCG~~tI~------~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 27 REKFCSKCGAKTIT------SCPNCSTPIRGDY 53 (158)
T ss_pred HHHHHHHhhHHHHH------HCcCCCCCCCCce
Confidence 34599999988777 7999999887543
No 178
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=27.17 E-value=64 Score=19.76 Aligned_cols=21 Identities=19% Similarity=0.380 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027504 201 DNVLKNLLLLIGLFVILALLF 221 (222)
Q Consensus 201 ~~~l~~~~~~~~~~~~~~l~~ 221 (222)
|.-|.++.+++|++.++..++
T Consensus 4 D~qL~~lan~lG~~~~~LIVl 24 (35)
T PF10215_consen 4 DVQLYTLANFLGVAAMVLIVL 24 (35)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344888999998887776654
No 179
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=65 Score=28.65 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=28.2
Q ss_pred CCCCCCcccccccc-----CCCCcEEcccCCccCHhHHHHHHH
Q 027504 23 ANDAGGFECNICFE-----LAQDPIVTLCGHLFCWPCLYRWLH 60 (222)
Q Consensus 23 ~~~~~~~~C~ICl~-----~~~~pv~l~CGH~FC~~Cl~~wl~ 60 (222)
........|++|.. .-+..+...|||.||+.|.+-|..
T Consensus 90 S~~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 90 SRFNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 34455677888877 233446679999999999998877
No 180
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=26.80 E-value=69 Score=22.15 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC
Q 027504 199 QADNVLKNLLLLIGLFVILALLFW 222 (222)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~~~l~~~ 222 (222)
|.+.+---+=+++.++|+.|+++|
T Consensus 34 qneYlt~MiGiWiVilFLtWf~lw 57 (67)
T PF10854_consen 34 QNEYLTIMIGIWIVILFLTWFLLW 57 (67)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Confidence 335555566778888888888764
No 181
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=26.43 E-value=1.4e+02 Score=19.46 Aligned_cols=13 Identities=8% Similarity=0.452 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 027504 208 LLLIGLFVILALL 220 (222)
Q Consensus 208 ~~~~~~~~~~~l~ 220 (222)
.+++.|+.++|+|
T Consensus 36 ~lilicllli~ii 48 (52)
T TIGR01294 36 CLILICLLLICII 48 (52)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555554
No 182
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=26.32 E-value=41 Score=19.88 Aligned_cols=11 Identities=45% Similarity=0.863 Sum_probs=7.9
Q ss_pred CCCCCCccccc
Q 027504 64 HSQECPVCKAV 74 (222)
Q Consensus 64 ~~~~CPvCr~~ 74 (222)
....||+|.+.
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34689999764
No 183
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.27 E-value=30 Score=25.92 Aligned_cols=15 Identities=33% Similarity=0.911 Sum_probs=12.5
Q ss_pred ccCHhHHHHHHHhcC
Q 027504 49 LFCWPCLYRWLHHHS 63 (222)
Q Consensus 49 ~FC~~Cl~~wl~~~~ 63 (222)
.||..||..|.+...
T Consensus 42 gFCRNCLs~Wy~eaa 56 (104)
T COG3492 42 GFCRNCLSNWYREAA 56 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 499999999998543
No 184
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=26.00 E-value=31 Score=34.86 Aligned_cols=52 Identities=29% Similarity=0.570 Sum_probs=37.9
Q ss_pred CCCCccccccccCCCCcEE----------cccCCcc--------------------CHhHHHHHHHh-----cCCCCCCC
Q 027504 25 DAGGFECNICFELAQDPIV----------TLCGHLF--------------------CWPCLYRWLHH-----HSHSQECP 69 (222)
Q Consensus 25 ~~~~~~C~ICl~~~~~pv~----------l~CGH~F--------------------C~~Cl~~wl~~-----~~~~~~CP 69 (222)
..+--.|.-|+..+.||.- +.||-.| |..|..++-.. +.....||
T Consensus 65 ppD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~ 144 (711)
T TIGR00143 65 PADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACP 144 (711)
T ss_pred CCchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCC
Confidence 3466789999999888732 5788877 99999987542 23457999
Q ss_pred ccccccc
Q 027504 70 VCKAVVQ 76 (222)
Q Consensus 70 vCr~~v~ 76 (222)
.|.=.+.
T Consensus 145 ~Cgp~l~ 151 (711)
T TIGR00143 145 RCGPQLN 151 (711)
T ss_pred CCCcEEE
Confidence 9976553
No 185
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=25.46 E-value=25 Score=19.82 Aligned_cols=12 Identities=50% Similarity=1.043 Sum_probs=8.3
Q ss_pred CCCccccccccc
Q 027504 67 ECPVCKAVVQEE 78 (222)
Q Consensus 67 ~CPvCr~~v~~~ 78 (222)
.||+|.+.+...
T Consensus 3 ~CPiC~~~v~~~ 14 (26)
T smart00734 3 QCPVCFREVPEN 14 (26)
T ss_pred cCCCCcCcccHH
Confidence 588887776543
No 186
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=25.35 E-value=80 Score=26.75 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027504 201 DNVLKNLLLLIGLFVILALLF 221 (222)
Q Consensus 201 ~~~l~~~~~~~~~~~~~~l~~ 221 (222)
+.|.+.|+..+..|+||++|+
T Consensus 50 ~~~~~~l~w~~I~FliL~~lL 70 (204)
T PRK09174 50 THYASQLLWLAITFGLFYLFM 70 (204)
T ss_pred hhccHHHHHHHHHHHHHHHHH
Confidence 345556655555555555543
No 187
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.28 E-value=55 Score=29.57 Aligned_cols=19 Identities=21% Similarity=0.557 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027504 203 VLKNLLLLIGLFVILALLF 221 (222)
Q Consensus 203 ~l~~~~~~~~~~~~~~l~~ 221 (222)
+.=-|++.|+++||++|||
T Consensus 261 SiiaIliIVLIMvIIYLIL 279 (299)
T PF02009_consen 261 SIIAILIIVLIMVIIYLIL 279 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445778888899999987
No 188
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.12 E-value=27 Score=35.59 Aligned_cols=33 Identities=30% Similarity=0.579 Sum_probs=25.2
Q ss_pred CccccccccCCC-------CcEEcccCCccCHhHHHHHHH
Q 027504 28 GFECNICFELAQ-------DPIVTLCGHLFCWPCLYRWLH 60 (222)
Q Consensus 28 ~~~C~ICl~~~~-------~pv~l~CGH~FC~~Cl~~wl~ 60 (222)
+-.|.-|.+... .-++..|||.|+..|+.....
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~ 823 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESL 823 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHH
Confidence 337988987653 236689999999999987655
No 189
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=24.34 E-value=79 Score=32.62 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=16.3
Q ss_pred CCCCCCCCCCccccccccCCCCc
Q 027504 19 VGNSANDAGGFECNICFELAQDP 41 (222)
Q Consensus 19 ~~~~~~~~~~~~C~ICl~~~~~p 41 (222)
.+.++...+..+|.||+.++.-+
T Consensus 596 ~~~~~~~TdPNqCiiC~rVlSC~ 618 (958)
T KOG1074|consen 596 ENSENKRTDPNQCIICLRVLSCP 618 (958)
T ss_pred cccccccCCccceeeeeecccch
Confidence 33445566778999999887654
No 190
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=24.17 E-value=8 Score=25.52 Aligned_cols=14 Identities=43% Similarity=1.239 Sum_probs=12.1
Q ss_pred ccCCccCHhHHHHH
Q 027504 45 LCGHLFCWPCLYRW 58 (222)
Q Consensus 45 ~CGH~FC~~Cl~~w 58 (222)
.|++.||+.|-..|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 45 SCGTEFCFKCGEPW 58 (64)
T ss_dssp SCCSEECSSSTSES
T ss_pred CCCCcCccccCccc
Confidence 49999999998766
No 191
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.12 E-value=40 Score=26.95 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=13.1
Q ss_pred ccccCCCCcEEcccCCccCHh
Q 027504 33 ICFELAQDPIVTLCGHLFCWP 53 (222)
Q Consensus 33 ICl~~~~~pv~l~CGH~FC~~ 53 (222)
||.+.-+.-+.-.|||.||..
T Consensus 62 i~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecccccEEEEeccccccCh
Confidence 555544443335899999964
No 192
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.06 E-value=34 Score=32.31 Aligned_cols=32 Identities=28% Similarity=0.709 Sum_probs=23.4
Q ss_pred CCCccccccccCCCCc------EEcccCCccCHhHHHH
Q 027504 26 AGGFECNICFELAQDP------IVTLCGHLFCWPCLYR 57 (222)
Q Consensus 26 ~~~~~C~ICl~~~~~p------v~l~CGH~FC~~Cl~~ 57 (222)
...-.||-|.-.+... .-+.|||.|||-|-..
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhh
Confidence 3455699898766433 3479999999999764
No 193
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.95 E-value=32 Score=29.26 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.6
Q ss_pred CCCCCCcccccccccccccccCC
Q 027504 64 HSQECPVCKAVVQEEKLVPLYGR 86 (222)
Q Consensus 64 ~~~~CPvCr~~v~~~~l~p~~~~ 86 (222)
.+..||+|...+..++|.....+
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r 26 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIR 26 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCce
Confidence 35789999999998887665443
No 194
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=23.51 E-value=32 Score=32.12 Aligned_cols=33 Identities=30% Similarity=0.657 Sum_probs=25.6
Q ss_pred CCCCCccccccc-cCCCCcEEcccCCccCHhHHH
Q 027504 24 NDAGGFECNICF-ELAQDPIVTLCGHLFCWPCLY 56 (222)
Q Consensus 24 ~~~~~~~C~ICl-~~~~~pv~l~CGH~FC~~Cl~ 56 (222)
.......|.=|- .....-..++||..||..||.
T Consensus 35 ~~~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 35 IENGKYRCNRCGNTHIELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred cccCcEEehhcCCcchhhhcccccceEeehhhhh
Confidence 344667899888 445556778999999999995
No 195
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=23.42 E-value=45 Score=33.28 Aligned_cols=54 Identities=20% Similarity=0.481 Sum_probs=37.3
Q ss_pred CCCCCCccccccccCCCCc-----EEcccCCccCHhHHHHHHHhc--CCCCCCCccccccc
Q 027504 23 ANDAGGFECNICFELAQDP-----IVTLCGHLFCWPCLYRWLHHH--SHSQECPVCKAVVQ 76 (222)
Q Consensus 23 ~~~~~~~~C~ICl~~~~~p-----v~l~CGH~FC~~Cl~~wl~~~--~~~~~CPvCr~~v~ 76 (222)
+-......|.||-..=+.+ ....||-.|+..|+..|+... .+...||-||.-..
T Consensus 13 ~~~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~ 73 (694)
T KOG4443|consen 13 KAIIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEA 73 (694)
T ss_pred hhhhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeee
Confidence 3344567788887543332 234799999999999998854 44577999887543
No 196
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=23.35 E-value=1.6e+02 Score=18.80 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 027504 198 QQADNVLKNLLLLIGLFVILALL 220 (222)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~~~l~ 220 (222)
.++-+|+-|-+++++++++|-.|
T Consensus 5 ~~~~~fi~~T~fYf~Ill~L~yl 27 (42)
T PF12459_consen 5 KPAVKFIGKTLFYFAILLALIYL 27 (42)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888887777766544
No 197
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.25 E-value=38 Score=20.62 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=5.6
Q ss_pred ccccccccCCC
Q 027504 29 FECNICFELAQ 39 (222)
Q Consensus 29 ~~C~ICl~~~~ 39 (222)
.+||-|...++
T Consensus 3 i~CP~C~~~f~ 13 (37)
T PF13719_consen 3 ITCPNCQTRFR 13 (37)
T ss_pred EECCCCCceEE
Confidence 34665655443
No 198
>PHA00646 hypothetical protein
Probab=23.19 E-value=51 Score=22.79 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhC
Q 027504 199 QADNVLKNLLLLIGLFVILALLFW 222 (222)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~~~l~~~ 222 (222)
|.+.+.--+-++|.++|+.|+.+|
T Consensus 32 ~~eY~~~MVgIWlvI~Fl~Wf~i~ 55 (65)
T PHA00646 32 QNEYLTLMVGIWLVILFLTWFSLW 55 (65)
T ss_pred cceeehhHHHHHHHHHHHHHHHHH
Confidence 345566677888999998888653
No 199
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.47 E-value=73 Score=28.77 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027504 205 KNLLLLIGLFVILALLF 221 (222)
Q Consensus 205 ~~~~~~~~~~~~~~l~~ 221 (222)
=+||.++.+|||+|+|+
T Consensus 293 vkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 293 VKIFGILIVFFLVFVLF 309 (311)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45677777777777664
No 200
>PRK06870 secG preprotein translocase subunit SecG; Reviewed
Probab=21.66 E-value=1.1e+02 Score=21.47 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027504 200 ADNVLKNLLLLIGLFVILALL 220 (222)
Q Consensus 200 ~~~~l~~~~~~~~~~~~~~l~ 220 (222)
.|++|+|+-.+++++|++.-+
T Consensus 48 ~~~~L~k~T~il~~~F~i~~l 68 (76)
T PRK06870 48 AENFLSRLTAVLAVLFFVLSL 68 (76)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 589999998888877765433
No 201
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.58 E-value=24 Score=33.68 Aligned_cols=46 Identities=28% Similarity=0.559 Sum_probs=33.4
Q ss_pred CCCCCcccccc-ccCCCCcEEc--ccCCccCHhHHHHHHHhcCCCCCCCcccc
Q 027504 24 NDAGGFECNIC-FELAQDPIVT--LCGHLFCWPCLYRWLHHHSHSQECPVCKA 73 (222)
Q Consensus 24 ~~~~~~~C~IC-l~~~~~pv~l--~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~ 73 (222)
...+...|++| .+.+.+..++ .|.-.+|..||.+.+.. ..|++|.+
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~----~~~~~c~~ 263 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS----KSMCVCGA 263 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc----ccCCcchh
Confidence 34567779999 7777777665 68899999999887763 34566554
No 202
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=21.31 E-value=90 Score=19.21 Aligned_cols=16 Identities=6% Similarity=0.362 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 027504 206 NLLLLIGLFVILALLF 221 (222)
Q Consensus 206 ~~~~~~~~~~~~~l~~ 221 (222)
+++.+..++++++|++
T Consensus 5 K~~Vy~vV~ffv~LFi 20 (36)
T PF02532_consen 5 KIFVYTVVIFFVSLFI 20 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEeehhhHHHHHHHHh
Confidence 3444555555555544
No 203
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=20.68 E-value=92 Score=27.31 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027504 202 NVLKNLLLLIGLFVILALLF 221 (222)
Q Consensus 202 ~~l~~~~~~~~~~~~~~l~~ 221 (222)
-|+.-|||++++++++|||+
T Consensus 201 g~f~wl~i~~~l~~~~Y~i~ 220 (268)
T PF09451_consen 201 GFFTWLFIILFLFLAAYLIF 220 (268)
T ss_pred cHHHHHHHHHHHHHHHHhhh
Confidence 35677888888888888775
No 204
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=20.25 E-value=2.5e+02 Score=27.29 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=14.7
Q ss_pred CCccccccccCCCCcEEcccCC---ccCHhHH
Q 027504 27 GGFECNICFELAQDPIVTLCGH---LFCWPCL 55 (222)
Q Consensus 27 ~~~~C~ICl~~~~~pv~l~CGH---~FC~~Cl 55 (222)
.+-.|.+|-|.+ .|-| .-|..|-
T Consensus 268 ~e~~CAVCgDnA------aCqHYGvRTCEGCK 293 (605)
T KOG4217|consen 268 AEGLCAVCGDNA------ACQHYGVRTCEGCK 293 (605)
T ss_pred ccceeeecCChH------HhhhcCccccccch
Confidence 367799998854 3544 3466664
No 205
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=20.16 E-value=2e+02 Score=17.78 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027504 199 QADNVLKNLLLLIGLFVILA 218 (222)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~~~ 218 (222)
..+|++++|-+.++++|+.-
T Consensus 15 diqkwirnit~cfal~vv~l 34 (40)
T PF13124_consen 15 DIQKWIRNITFCFALLVVVL 34 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35789999988877776543
No 206
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.13 E-value=15 Score=20.15 Aligned_cols=6 Identities=50% Similarity=1.298 Sum_probs=2.6
Q ss_pred CCCccc
Q 027504 67 ECPVCK 72 (222)
Q Consensus 67 ~CPvCr 72 (222)
.||.|.
T Consensus 15 fC~~CG 20 (23)
T PF13240_consen 15 FCPNCG 20 (23)
T ss_pred chhhhC
Confidence 344443
No 207
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=20.12 E-value=33 Score=33.81 Aligned_cols=24 Identities=38% Similarity=0.793 Sum_probs=18.3
Q ss_pred cccCCccCHhHHHHHHHhcCCCCCCCcccc
Q 027504 44 TLCGHLFCWPCLYRWLHHHSHSQECPVCKA 73 (222)
Q Consensus 44 l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr~ 73 (222)
..||++||..|+.+ .+..||.|-.
T Consensus 535 ~~C~avfH~~C~~r------~s~~CPrC~R 558 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR------KSPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHHhc------cCCCCCchHH
Confidence 47999999999853 3445999954
No 208
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=20.11 E-value=74 Score=29.28 Aligned_cols=40 Identities=25% Similarity=0.637 Sum_probs=23.7
Q ss_pred cccccccCCCCcEE---cccCCccCHhHHHHHHHhcCCCCCCCccc
Q 027504 30 ECNICFELAQDPIV---TLCGHLFCWPCLYRWLHHHSHSQECPVCK 72 (222)
Q Consensus 30 ~C~ICl~~~~~pv~---l~CGH~FC~~Cl~~wl~~~~~~~~CPvCr 72 (222)
.|-.|.+....... -.|.+.||..|=. +++. .-..||-|.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHe--sLh~CpgCe 374 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDV-FIHE--SLHNCPGCE 374 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchH-HHHh--hhhcCCCcC
Confidence 37777555443322 3788888888843 3331 335788885
Done!