AmiGO: BLAST Results


BLAST match view associations BLAST with CP33 CP33 CP33 AT3G52380	protein from Arabidopsis thaliana	1.1e-21
BLAST match view associations BLAST with CP31B CP31B CP31B AT5G50250	protein from Arabidopsis thaliana	9.8e-16
BLAST match view associations BLAST with RBP31 RBP31 RBP31 AT4G24770	protein from Arabidopsis thaliana	8.9e-15
BLAST match view associations BLAST with AT2G37220 AT2G37220 AT2G37220	protein from Arabidopsis thaliana	1.2e-14
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	5.6e-13
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	7.1e-13
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	9.1e-13
BLAST match view associations BLAST with GSU1324 GSU1324 GSU1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	3.5e-11
BLAST match view associations BLAST with GSU_1324 GSU_1324 GSU_1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	3.5e-11
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	5.8e-11
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	7.4e-11
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	8.1e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	1.7e-10
BLAST match view associations BLAST with PSRP2 PSRP2 PSRP2 AT3G52150	protein from Arabidopsis thaliana	1.8e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.0e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	2.0e-10
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	2.0e-10
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	2.0e-10
BLAST match view associations BLAST with AT1G60000 AT1G60000 AT1G60000	protein from Arabidopsis thaliana	2.0e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	2.5e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	2.5e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	2.5e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.6e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.2e-10
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	8.4e-10
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	1.1e-09
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.4e-09
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.8e-09
BLAST match view associations BLAST with AT2G35410 AT2G35410 AT2G35410	protein from Arabidopsis thaliana	1.8e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	2.2e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	2.2e-09
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	3.6e-09
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	5.9e-09
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	5.9e-09
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3	gene from Caenorhabditis elegans	5.9e-09
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3 Protein R09B3.3	protein from Caenorhabditis elegans	5.9e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	9.7e-09
BLAST match view associations BLAST with CPS_0338 CPS_0338 CPS_0338 RNA-binding protein	protein from Colwellia psychrerythraea 34H	9.7e-09
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	9.7e-09
BLAST match view associations BLAST with CPS_0338 CPS_0338 CPS_0338 RNA-binding protein	protein from Colwellia psychrerythraea 34H	9.7e-09
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	9.7e-09
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	1.2e-08
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-08
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	1.6e-08
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	1.6e-08
BLAST match view associations BLAST with R06C1.4 R06C1.4 R06C1.4	gene from Caenorhabditis elegans	1.6e-08
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	2.0e-08
BLAST match view associations BLAST with SO_0208 SO_0208 SO_0208 RNA-binding protein	protein from Shewanella oneidensis MR-1	2.0e-08
BLAST match view associations BLAST with SO_0208 SO_0208 SO_0208 RNA-binding protein	protein from Shewanella oneidensis MR-1	2.0e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	2.1e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Gallus gallus	2.5e-08
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	2.6e-08
BLAST match view associations BLAST with rbm24-b rbm24-b rbm24-b RNA-binding protein 24-B	protein from Xenopus laevis	3.0e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	3.1e-08
BLAST match view associations BLAST with rbm24-a rbm24-a rbm24-a RNA-binding protein 24-A	protein from Xenopus laevis	3.1e-08
BLAST match view associations BLAST with rbm24 rbm24 rbm24 RNA-binding protein 24	protein from Xenopus (Silurana) tropicalis	3.1e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	3.2e-08
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 ELAV-like protein 2	protein from Homo sapiens	3.3e-08
BLAST match view associations BLAST with DDB_G0279695 DDB_G0279695 DDB_G0279695 RNA recognition motif-containing protein RRM	gene from Dictyostelium discoideum	3.3e-08
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	3.3e-08
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	3.3e-08
BLAST match view associations BLAST with rbm24b rbm24b rbm24b RNA binding motif protein 24b	gene_product from Danio rerio	3.3e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Homo sapiens	3.6e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Sus scrofa	3.7e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Cleavage stimulation factor subunit 2 tau variant	protein from Homo sapiens	3.7e-08
BLAST match view associations BLAST with Cstf2t Cstf2t Cstf2t cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant	gene from Rattus norvegicus	3.8e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Bos taurus	3.8e-08
BLAST match view associations BLAST with Cstf2t Cstf2t Cstf2t cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein from Mus musculus	3.8e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 Uncharacterized protein	protein from Bos taurus	3.9e-08
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	3.9e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Gallus gallus	4.1e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	4.2e-08
BLAST match view associations BLAST with VC_0159 VC_0159 VC_0159 RNA-binding protein	protein from Vibrio cholerae O1 biovar El Tor str. N16961	4.2e-08
BLAST match view associations BLAST with VC_0159 VC_0159 VC_0159 RNA-binding protein	protein from Vibrio cholerae O1 biovar El Tor	4.2e-08
BLAST match view associations BLAST with cstf2 cstf2 cstf2 cleavage stimulation factor, 3' pre-RNA, subunit 2	gene_product from Danio rerio	4.3e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	4.3e-08
BLAST match view associations BLAST with rbm24a rbm24a rbm24a RNA binding motif protein 24a	gene_product from Danio rerio	4.4e-08
BLAST match view associations BLAST with CstF-64 CstF-64 CstF-64 Cleavage stimulation factor 64 kilodalton subunit	protein from Drosophila melanogaster	4.6e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Canis lupus familiaris	4.6e-08
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	5.2e-08
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	5.2e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Bos taurus	5.4e-08
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	5.4e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Canis lupus familiaris	5.5e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Homo sapiens	5.5e-08
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027505
        (222 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding...   253  1.1e-21   1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin...   197  9.8e-16   1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370...   191  8.9e-15   1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi...   187  1.2e-14   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   171  5.6e-13   1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi...   170  7.1e-13   1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s...   169  9.1e-13   1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s...   154  3.5e-11   1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"...   154  3.5e-11   1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi...   152  5.8e-11   1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   151  7.4e-11   1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin...   155  8.1e-11   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   150  9.4e-11   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   150  9.4e-11   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   150  9.4e-11   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  9.4e-11   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  9.4e-11   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  9.4e-11   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  9.4e-11   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  9.4e-11   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  9.4e-11   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  9.4e-11   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   150  9.4e-11   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  9.4e-11   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  1.7e-10   1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-speciﬁc...   149  1.8e-10   1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi...   147  2.0e-10   1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   147  2.0e-10   1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   147  2.0e-10   1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   147  2.0e-10   1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi...   149  2.0e-10   1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"...   146  2.5e-10   1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"...   146  2.5e-10   1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"...   146  2.5e-10   1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   150  2.6e-10   1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi...   143  5.2e-10   1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   141  8.4e-10   1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3...   144  1.1e-09   1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin...   139  1.4e-09   1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   138  1.8e-09   1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi...   143  1.8e-09   1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind...   137  2.2e-09   1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding...   137  2.2e-09   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   135  3.6e-09   1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin...   133  5.9e-09   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   133  5.9e-09   1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   133  5.9e-09   1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha...   133  5.9e-09   1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci...   133  5.9e-09   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   131  9.7e-09   1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ...   131  9.7e-09   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   131  9.7e-09   1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"...   131  9.7e-09   1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   131  9.7e-09   1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   130  1.2e-08   1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ...   130  1.2e-08   1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   129  1.6e-08   1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   129  1.6e-08   1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha...   129  1.6e-08   1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"...   128  2.0e-08   1
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s...   128  2.0e-08   1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s...   128  2.0e-08   1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein...   136  2.1e-08   1
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ...   128  2.5e-08   1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer...   127  2.6e-08   1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3...   127  2.6e-08   1
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24...   128  3.0e-08   1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ...   128  3.1e-08   1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24...   128  3.1e-08   1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ...   128  3.1e-08   1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein...   136  3.2e-08   1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp...   126  3.3e-08   1
DICTYBASE|DDB_G0279695 - symbol:DDB_G0279695 "RNA recogni...   126  3.3e-08   1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p...   126  3.3e-08   1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702...   126  3.3e-08   1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti...   129  3.3e-08   1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac...   134  3.6e-08   1
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein...   136  3.7e-08   1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa...   136  3.7e-08   1
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,...   136  3.8e-08   1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein...   136  3.8e-08   1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac...   136  3.8e-08   1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"...   128  3.9e-08   1
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"...   128  3.9e-08   1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"...   134  4.1e-08   1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ...   125  4.2e-08   1
UNIPROTKB|Q9KVI6 - symbol:VC_0159 "RNA-binding protein" s...   125  4.2e-08   1
TIGR_CMR|VC_0159 - symbol:VC_0159 "RNA-binding protein" s...   125  4.2e-08   1
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati...   134  4.3e-08   1
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ...   128  4.3e-08   1
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif...   127  4.4e-08   1
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac...   133  4.6e-08   1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"...   134  4.6e-08   1
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer...   136  4.6e-08   1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p...   134  5.2e-08   1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p...   134  5.2e-08   1
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac...   134  5.4e-08   1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p...   134  5.4e-08   1
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"...   134  5.5e-08   1
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac...   134  5.5e-08   1

WARNING:  Descriptions of 502 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2079874 [details] [associations]
            symbol:CP33 "chloroplast RNA-binding protein 33"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
            "ovule development" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
            UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
            EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
            ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
            PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
            KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
            PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
            Uniprot:Q39061
        Length = 329

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 46/64 (71%), Positives = 58/64 (90%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVGNLPY++TSS L+++F EAGTV   +IVYD+VTDRSRGFGFVTMGS+EEAKEA+++
Sbjct:   117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query:   174 FDGS 177
             F+ S
Sbjct:   177 FNSS 180

 Score = 140 (54.3 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 27/76 (35%), Positives = 46/76 (60%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             ++Y GNL +++TS  L + F +   V  A+++Y+R T RSRGFGF++  S E  + A+  
Sbjct:   220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279

Query:   174 FDGSVSADGICIAIVL 189
              +G V  +G  + + L
Sbjct:   280 MNG-VEVEGRALRLNL 294


>TAIR|locus:2157702 [details] [associations]
            symbol:CP31B "chloroplast RNA-binding protein 31B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
            evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
            "response to cold" evidence=RCA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
            eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
            ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
            EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
            ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
            PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
            KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
            PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
        Length = 289

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 38/70 (54%), Positives = 55/70 (78%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A+L+VGNLPY + S +LA +F +AGTV  +E++Y+R TD+SRGFGFVTM +VEEA++A+ 
Sbjct:   113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172

Query:   173 LFDGSVSADG 182
              F+ S   +G
Sbjct:   173 KFN-SFEVNG 181

 Score = 163 (62.4 bits), Expect = 8.0e-12, P = 8.0e-12
 Identities = 36/80 (45%), Positives = 47/80 (58%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             A R+YVGNLP+ + S  L  +F+E G V  A +V DR T RSRGFGFV M +  E   AI
Sbjct:   206 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265

Query:   172 RLFDGSVSADGICIAIVLIE 191
                DG  + +G  I + + E
Sbjct:   266 AALDGQ-NLEGRAIKVNVAE 284


>TAIR|locus:2122009 [details] [associations]
            symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
            immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
            evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0009073 "aromatic amino acid family biosynthetic process"
            evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
            conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
            stabilization" evidence=IMP] [GO:0006396 "RNA processing"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
            GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
            EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
            EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
            IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
            PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
            ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
            PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
            KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
            OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
            Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
            Uniprot:Q04836
        Length = 329

 Score = 191 (72.3 bits), Expect = 8.9e-15, P = 8.9e-15
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A+L+VGNL Y + S +LA +F +AGTV  AE++Y+R TD+SRGFGFVTM SV+EA+ A+ 
Sbjct:   150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209

Query:   173 LFD 175
              F+
Sbjct:   210 KFN 212

 Score = 189 (71.6 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 39/80 (48%), Positives = 52/80 (65%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             A R+YVGNLP+ + +  L ++F+E G V  A +VYDR T RSRGFGFVTM  V+E  EAI
Sbjct:   243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302

Query:   172 RLFDGSVSADGICIAIVLIE 191
                DG  + +G  I + + E
Sbjct:   303 SALDGQ-NLEGRAIRVNVAE 321


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 187 (70.9 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 35/69 (50%), Positives = 50/69 (72%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VGNLP+++ S+ LA++F  AG V   E++YD++T RSRGFGFVTM SV E + A + 
Sbjct:    92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query:   174 FDGSVSADG 182
             F+G    DG
Sbjct:   152 FNG-YELDG 159

 Score = 158 (60.7 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 31/69 (44%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             R+YVGNL + +   +L  +F+E G V  A ++YDR + RS+GFGFVT  S +E + AI+ 
Sbjct:   205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264

Query:   174 FDGSVSADG 182
              DG+   DG
Sbjct:   265 LDGA-DLDG 272


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 33/74 (44%), Positives = 48/74 (64%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L Y  T  SL E F++ GT+A  +++ DR TDRSRGFGFVT  + E+AK+A+  
Sbjct:    24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83

Query:   174 FDGSVSADGICIAI 187
              +G    DG  I +
Sbjct:    84 MNGK-QVDGRMIRV 96


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 31/65 (47%), Positives = 47/65 (72%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             A++L++G L +  T   L+E F++ G V  A+IV DRV+DRS+GFGFVT  S +EA++A+
Sbjct:    33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query:   172 RLFDG 176
               F+G
Sbjct:    93 MEFNG 97


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 37/70 (52%), Positives = 46/70 (65%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             ++LYVGNL Y +  + L   FA  GTV SA++V DR T RSRGFGFV MGS +EA+ AI 
Sbjct:     3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62

Query:   173 LFDGSVSADG 182
               +G    DG
Sbjct:    63 GLNGK-EMDG 71


>UNIPROTKB|Q74DJ2 [details] [associations]
            symbol:GSU1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 34/81 (41%), Positives = 48/81 (59%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             A  LYVG++ Y  T   L  +F+ AGTV S  I+ D  T RS+G G+V M + EEAKEAI
Sbjct:     2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61

Query:   172 RLFDGSVSADGICIAIVLIEP 192
                DG++  + + I + +  P
Sbjct:    62 ETLDGALLRNRV-ITVSVARP 81


>TIGR_CMR|GSU_1324 [details] [associations]
            symbol:GSU_1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 34/81 (41%), Positives = 48/81 (59%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             A  LYVG++ Y  T   L  +F+ AGTV S  I+ D  T RS+G G+V M + EEAKEAI
Sbjct:     2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61

Query:   172 RLFDGSVSADGICIAIVLIEP 192
                DG++  + + I + +  P
Sbjct:    62 ETLDGALLRNRV-ITVSVARP 81


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 33/65 (50%), Positives = 40/65 (61%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             A R+YVGNL  + T   L E F+  G V  A ++ DR TDRSRGFGFVT  S  EA+ A+
Sbjct:     2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61

Query:   172 RLFDG 176
                DG
Sbjct:    62 SGMDG 66


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +  T  SL +VF++ G VA   +V DR + RSRGFGFVT  + E+AK+A+  
Sbjct:     7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 155 (59.6 bits), Expect = 8.1e-11, P = 8.1e-11
 Identities = 30/65 (46%), Positives = 40/65 (61%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +++L++G + YSM   SL E F + G V    ++ DR T RSRGFGFVT  S E A  AI
Sbjct:    39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query:   172 RLFDG 176
             +  DG
Sbjct:    99 QALDG 103


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 150 (57.9 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>TAIR|locus:2083810 [details] [associations]
            symbol:PSRP2 "plastid-speciﬁc ribosomal protein 2"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=RCA]
            [GO:0019288 "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
            targeting to chloroplast" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
            EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
            RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
            SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
            EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
            KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
            PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
            Genevestigator:Q8VYM4 Uniprot:Q8VYM4
        Length = 253

 Score = 149 (57.5 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 29/80 (36%), Positives = 50/80 (62%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             A R+Y+GN+P ++T+  L ++  E G V   +++YD+ + RSR FGF TM SVE+A   +
Sbjct:    75 ARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134

Query:   172 RLFDGSVSADGICIAIVLIE 191
                +G+ + +G  I + + E
Sbjct:   135 EKLNGN-TVEGREIKVNITE 153

 Score = 119 (46.9 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             ++YVGNL  ++T   L  +F+E G V SA++     T +S GFGFVT  S E+ + AI  
Sbjct:   178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237

Query:   174 FDGSV 178
              + S+
Sbjct:   238 LNNSL 242


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 27/65 (41%), Positives = 43/65 (66%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSV 178
              +G V
Sbjct:    67 MNGKV 71


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     +L +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     +L +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     +L +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>TAIR|locus:2202740 [details] [associations]
            symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
            EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
            PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
            ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
            EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
            TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
            ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
            Uniprot:Q9ZUJ3
        Length = 258

 Score = 149 (57.5 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 33/78 (42%), Positives = 46/78 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VGNL +++TS SLA  F E G V  A +V+D  T RSRG+GFV   S  E + A+  
Sbjct:   178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237

Query:   174 FDGSVSADGICIAIVLIE 191
              DG    +G  I + L +
Sbjct:   238 LDG-FELEGRAIRVNLAQ 254

 Score = 141 (54.7 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 27/64 (42%), Positives = 42/64 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +LY GNLPY++ S++LA++  +       E++Y+R T +SRGF FVTM +VE+    I  
Sbjct:    86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145

Query:   174 FDGS 177
              DG+
Sbjct:   146 LDGT 149


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 29/69 (42%), Positives = 44/69 (63%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 29/69 (42%), Positives = 44/69 (63%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 29/69 (42%), Positives = 44/69 (63%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 150 (57.9 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGK-SVDG 74


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 26/63 (41%), Positives = 42/63 (66%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +     SL +VF++ G ++   +V DR T RSRGFGFVT  ++++AK+A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   174 FDG 176
              +G
Sbjct:    67 MNG 69


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 27/74 (36%), Positives = 46/74 (62%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L +  T  SL + F++ G + +  +  +R T+RSRGFGFVT  + ++AK+A+  
Sbjct:     6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    66 MNGK-SVDGRTIRV 78


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 30/65 (46%), Positives = 42/65 (64%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +++++VG + YS     L E F++ G V  A+I+ DR T RSRGF FVT  S EEA  A+
Sbjct:    33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92

Query:   172 RLFDG 176
             +L DG
Sbjct:    93 QL-DG 96


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 27/69 (39%), Positives = 44/69 (63%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L +     SL +VF++ G ++   +V DR T RSRGFGFVT  + ++AK+A+  
Sbjct:     6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query:   174 FDGSVSADG 182
              +G  + DG
Sbjct:    66 MNGK-AVDG 73


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 27/69 (39%), Positives = 42/69 (60%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L +      L + F + G ++   +V DR T RSRGFGFVT  +V++AK+A+  
Sbjct:     6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    66 MNGK-SVDG 73


>TAIR|locus:2062379 [details] [associations]
            symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
            "chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
            evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
            "ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
            from plastid promoter" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
            UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
            EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
            ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
            PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
            KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
            InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
            ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
            Uniprot:O82299
        Length = 308

 Score = 143 (55.4 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 32/80 (40%), Positives = 50/80 (62%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+V NLP+SM+ + ++E+F + GTV + EI+  +   ++RGF FVTM S EEA+ AI  
Sbjct:    96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAIDK 154

Query:   174 FDGSVSADGICIAIVLIEPF 193
             FD +    G  I++     F
Sbjct:   155 FD-TFQVSGRIISVSFARRF 173

 Score = 105 (42.0 bits), Expect = 0.00057, P = 0.00057
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             +LYV NL +   S+ L E+F  A     SA +V+     RS G+GFV+  + EEA+ AI 
Sbjct:   195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAIT 254

Query:   173 LFDG 176
               +G
Sbjct:   255 KLNG 258


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 24/63 (38%), Positives = 41/63 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             ++YVG+L Y +T+  L   F + G +  A+++ DR T RS+GF F+T G+ + A+EA+  
Sbjct:    19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78

Query:   174 FDG 176
              +G
Sbjct:    79 ANG 81


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 24/63 (38%), Positives = 41/63 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             ++YVG+L Y +T+  L   F + G +  A+++ DR T RS+GF F+T G+ + A+EA+  
Sbjct:    19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78

Query:   174 FDG 176
              +G
Sbjct:    79 ANG 81


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 27/65 (41%), Positives = 38/65 (58%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +++L+VG L +    SSL + F   G V  A ++ DR T RSRGFGFV+    + A  AI
Sbjct:    34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query:   172 RLFDG 176
             +  DG
Sbjct:    94 KEMDG 98


>UNIPROTKB|Q43472 [details] [associations]
            symbol:blt801 "Glycine-rich RNA-binding protein blt801"
            species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
            to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
            Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
        Length = 161

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/74 (40%), Positives = 42/74 (56%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             R +VG L ++    SL   F++ G V  ++I+ DR T RSRGFGFVT  S E  ++AI  
Sbjct:     7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query:   174 FDGSVSADGICIAI 187
              +G    DG  I +
Sbjct:    67 MNGQ-DLDGRNITV 79


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 27/69 (39%), Positives = 42/69 (60%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L ++    +L + F+  G ++   +V DR T RSRGFGF+T  + E A +A+R 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGE-SLDG 74


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 27/69 (39%), Positives = 42/69 (60%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L ++    +L + F+  G ++   +V DR T RSRGFGF+T  + E A +A+R 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGE-SLDG 74


>WB|WBGene00011156 [details] [associations]
            symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
            RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
            IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
            GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
            WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
            Uniprot:O45713
        Length = 85

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/80 (37%), Positives = 43/80 (53%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             +YVGN P+  T   L   F++AG V++  IV DR T R RGF FV       A+ A+  F
Sbjct:     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65

Query:   175 DGSVSADGICIAIVLIEPFN 194
             +G V  +G  + + L +  N
Sbjct:    66 NG-VDFNGRALRVNLAQNRN 84


>UNIPROTKB|O45713 [details] [associations]
            symbol:R09B3.3 "Protein R09B3.3" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
            SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
            EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
            UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
            OMA:KRVHIPT NextBio:878159 Uniprot:O45713
        Length = 85

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/80 (37%), Positives = 43/80 (53%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             +YVGN P+  T   L   F++AG V++  IV DR T R RGF FV       A+ A+  F
Sbjct:     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65

Query:   175 DGSVSADGICIAIVLIEPFN 194
             +G V  +G  + + L +  N
Sbjct:    66 NG-VDFNGRALRVNLAQNRN 84


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 27/69 (39%), Positives = 41/69 (59%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L ++    +L + F+  G ++   +V DR T RSRGFGF+T  + E A  A+R 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGE-SLDG 74


>UNIPROTKB|Q48A10 [details] [associations]
            symbol:CPS_0338 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
            STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
            HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
            Uniprot:Q48A10
        Length = 160

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             LYVGNLPY    +S+ E+F+E G+V S  ++ D+ T + RGFGFV M S ++  +AI
Sbjct:    73 LYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAI 128


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 28/69 (40%), Positives = 41/69 (59%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L +      L  VF++ G +    +V DR T RSRGFGFVT  + E+AK+A+  
Sbjct:     7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66

Query:   174 FDGSVSADG 182
              +G  + DG
Sbjct:    67 MNGK-TVDG 74


>TIGR_CMR|CPS_0338 [details] [associations]
            symbol:CPS_0338 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
            RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
            GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
            HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
            Uniprot:Q48A10
        Length = 160

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             LYVGNLPY    +S+ E+F+E G+V S  ++ D+ T + RGFGFV M S ++  +AI
Sbjct:    73 LYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAI 128


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 26/76 (34%), Positives = 45/76 (59%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +A+L+V  L    T  SL ++F+  G +  A ++ D  T R +GFGF+T  S ++A++A+
Sbjct:     6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query:   172 RLFDGSVSADGICIAI 187
             +  DG +  DG  I +
Sbjct:    66 KSLDGKI-VDGRLIFV 80


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/69 (39%), Positives = 41/69 (59%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L ++    +L + F+  G ++   +V DR T RSRGFGF+T  + E A  A+R 
Sbjct:     7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGE-SLDG 74


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L ++    +L + F   G ++   +V DR T RSRGFGF+T    E A +A+R 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGE-SLDG 74


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/69 (39%), Positives = 41/69 (59%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L ++    +L + F+  G ++   +V DR T RSRGFGF+T  + E A  A+R 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGE-SLDG 74


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 26/69 (37%), Positives = 41/69 (59%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L ++    +L + F+  G ++   +V DR T RSRGFGF+T  + E A + +R 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGE-SLDG 74


>WB|WBGene00011059 [details] [associations]
            symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
            EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
            SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
            GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
            WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
            Uniprot:O62337
        Length = 84

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 28/68 (41%), Positives = 37/68 (54%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             +YVGN+PY  T   +   FA  G V +  IVYDR T R RGF FV       A+ A+   
Sbjct:     8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67

Query:   175 DGSVSADG 182
             +G V+ +G
Sbjct:    68 NG-VAFNG 74


>UNIPROTKB|A5GFN7 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
            GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
            ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
            ArrayExpress:A5GFN7 Uniprot:A5GFN7
        Length = 193

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/69 (39%), Positives = 41/69 (59%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 93

Query:   174 FDGSVSADG 182
              D + + DG
Sbjct:    94 -DPNPNIDG 101


>UNIPROTKB|Q8EK89 [details] [associations]
            symbol:SO_0208 "RNA-binding protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
            HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
            GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
            ProtClustDB:CLSK905649 Uniprot:Q8EK89
        Length = 154

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/61 (44%), Positives = 34/61 (55%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             LYVGNLPY +    +  +F E G V S  +V DR T R +GFGFV M      K  ++L 
Sbjct:    66 LYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQKAMVKLN 125

Query:   175 D 175
             D
Sbjct:   126 D 126


>TIGR_CMR|SO_0208 [details] [associations]
            symbol:SO_0208 "RNA-binding protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
            HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
            GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
            ProtClustDB:CLSK905649 Uniprot:Q8EK89
        Length = 154

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/61 (44%), Positives = 34/61 (55%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             LYVGNLPY +    +  +F E G V S  +V DR T R +GFGFV M      K  ++L 
Sbjct:    66 LYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQKAMVKLN 125

Query:   175 D 175
             D
Sbjct:   126 D 126


>UNIPROTKB|E2R1C1 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
            Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
        Length = 435

 Score = 136 (52.9 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G+V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81

Query:   175 DG 176
             +G
Sbjct:    82 NG 83


>UNIPROTKB|Q5ZJX4 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
            UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
            InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
        Length = 215

 Score = 128 (50.1 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T SSL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 30/71 (42%), Positives = 41/71 (57%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI- 171
             A+L++G L +  T   L E F+  GT+  A +V DR T+RSRGFGFV   S  EA  A+ 
Sbjct:     2 AKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMG 61

Query:   172 ----RLFDGSV 178
                 + FDG +
Sbjct:    62 AMNNQEFDGRI 72


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             + +L++G L +    +SL + FA  G V  A+++ DR T RSRGFGFV       A  AI
Sbjct:    34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query:   172 RLFDG 176
                DG
Sbjct:    94 SEMDG 98


>UNIPROTKB|Q9I8B3 [details] [associations]
            symbol:rbm24-b "RNA-binding protein 24-B" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0010830 "regulation of myotube differentiation" evidence=ISS]
            [GO:0043488 "regulation of mRNA stability" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
            EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
            ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
            CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
        Length = 224

 Score = 128 (50.1 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T SSL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>UNIPROTKB|Q5ZMA3 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
            GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
            IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
            ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
            KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
        Length = 225

 Score = 128 (50.1 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T SSL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>UNIPROTKB|Q6GQD3 [details] [associations]
            symbol:rbm24-a "RNA-binding protein 24-A" species:8355
            "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0010830 "regulation of myotube differentiation" evidence=IMP]
            [GO:0043488 "regulation of mRNA stability" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
            UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
            GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
            HOVERGEN:HBG108399 Uniprot:Q6GQD3
        Length = 225

 Score = 128 (50.1 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T SSL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>UNIPROTKB|Q6P8A7 [details] [associations]
            symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
            (Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
            evidence=ISS] [GO:0043488 "regulation of mRNA stability"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
            GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
            HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
            RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
            SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
            Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
            Bgee:Q6P8A7 Uniprot:Q6P8A7
        Length = 226

 Score = 128 (50.1 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T SSL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>UNIPROTKB|J9P8Y3 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
            EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
        Length = 558

 Score = 136 (52.9 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G+V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|B1AM48 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
            HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
            Ensembl:ENST00000440102 Uniprot:B1AM48
        Length = 189

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 110 (43.8 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query:   175 DG 176
             +G
Sbjct:   101 NG 102


>DICTYBASE|DDB_G0279695 [details] [associations]
            symbol:DDB_G0279695 "RNA recognition motif-containing
            protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
            ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
            ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
            GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
            Uniprot:Q54WE9
        Length = 84

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             R++V  +P+S+   +L   F++ G V+   +V DR+T RS+GFGFVT  + E A+ A+
Sbjct:     4 RIFVARIPWSICKIALKTHFSKFGPVSDGYVVLDRITKRSKGFGFVTFDNAESAQNAV 61


>UNIPROTKB|K7GQZ8 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
            Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
        Length = 88

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query:   118 GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
             GN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  +G
Sbjct:     2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 60


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 29/74 (39%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             R +VG L ++    +L   FA+ G V  ++I+ DR T RSRGFGFVT    +  K+AI  
Sbjct:     9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query:   174 FDGSVSADGICIAI 187
              +G    DG  I +
Sbjct:    69 MNGQ-DLDGRSITV 81


>ZFIN|ZDB-GENE-060312-43 [details] [associations]
            symbol:rbm24b "RNA binding motif protein 24b"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
            looping" evidence=IMP] [GO:0072358 "cardiovascular system
            development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
            tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
            muscle tissue development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
            GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
            IPI:IPI00898048 ProteinModelPortal:E9QCG4
            Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
        Length = 245

 Score = 129 (50.5 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T SSL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>UNIPROTKB|E9PID8 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
            HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
            Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
            Uniprot:E9PID8
        Length = 438

 Score = 134 (52.2 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|F1SD01 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
            RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
            Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
            Uniprot:F1SD01
        Length = 615

 Score = 136 (52.9 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G+V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|Q9H0L4 [details] [associations]
            symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
            variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
            eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
            EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
            RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
            SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
            PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
            PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
            Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
            CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
            MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
            InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
            NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
            GermOnline:ENSG00000177613 Uniprot:Q9H0L4
        Length = 616

 Score = 136 (52.9 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G+V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>RGD|1310026 [details] [associations]
            symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
            2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
            ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
            Uniprot:B5DFH8
        Length = 629

 Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G+V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|G3MZ78 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
            EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
        Length = 632

 Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G+V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>MGI|MGI:1932622 [details] [associations]
            symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
            subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
            polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
            eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
            OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
            EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
            RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
            SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
            REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
            Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
            UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
            Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
        Length = 632

 Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G+V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|E1BLB7 [details] [associations]
            symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
            OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
            UniGene:Bt.106613 ProteinModelPortal:E1BLB7
            Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
            NextBio:20876057 Uniprot:E1BLB7
        Length = 239

 Score = 128 (50.1 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 27/69 (39%), Positives = 41/69 (59%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 93

Query:   174 FDGSVSADG 182
              D + + DG
Sbjct:    94 -DPNPNIDG 101


>UNIPROTKB|A5GFN8 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
            HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
            CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
            SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
            GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
        Length = 239

 Score = 128 (50.1 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 27/69 (39%), Positives = 41/69 (59%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 93

Query:   174 FDGSVSADG 182
              D + + DG
Sbjct:    94 -DPNPNIDG 101


>UNIPROTKB|Q5ZLS0 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
            EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
            UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
            Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
            NextBio:20824917 Uniprot:Q5ZLS0
        Length = 475

 Score = 134 (52.2 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|F6VZ39 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
            HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
            SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
            Bgee:F6VZ39 Uniprot:F6VZ39
        Length = 123

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>UNIPROTKB|Q9KVI6 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 26/57 (45%), Positives = 37/57 (64%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             LYVGNLPY    S + E+FAE G V +  ++ D+ T + RGFGFV + +  +A+ AI
Sbjct:    66 LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAA-SQAQTAI 121


>TIGR_CMR|VC_0159 [details] [associations]
            symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
            OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
            DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
            ProtClustDB:CLSK873887 Uniprot:Q9KVI6
        Length = 152

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 26/57 (45%), Positives = 37/57 (64%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             LYVGNLPY    S + E+FAE G V +  ++ D+ T + RGFGFV + +  +A+ AI
Sbjct:    66 LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAA-SQAQTAI 121


>ZFIN|ZDB-GENE-031118-2 [details] [associations]
            symbol:cstf2 "cleavage stimulation factor, 3'
            pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
            HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
            UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
            STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
            InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
            Uniprot:Q6P0U7
        Length = 488

 Score = 134 (52.2 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85

Query:   175 DG 176
             +G
Sbjct:    86 NG 87


>UNIPROTKB|E1BZ17 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
            myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
            mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
            GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
            IPI:IPI00580084 ProteinModelPortal:E1BZ17
            Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
        Length = 245

 Score = 128 (50.1 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T SSL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>ZFIN|ZDB-GENE-040628-1 [details] [associations]
            symbol:rbm24a "RNA binding motif protein 24a"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003228
            "atrial cardiac muscle tissue development" evidence=IMP]
            [GO:0072358 "cardiovascular system development" evidence=IGI]
            [GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
            GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
            ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
            Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
            ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
        Length = 230

 Score = 127 (49.8 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T SSL + F   G +  A ++ DR T +SRG+GFVTM     A  A + 
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>FB|FBgn0027841 [details] [associations]
            symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
            subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
            cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
            factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
            SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
            InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
            ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
        Length = 437

 Score = 133 (51.9 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L E+F+E G V S ++V+DR + + +GFGF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|J9NX69 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
            Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
        Length = 509

 Score = 134 (52.2 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>ASPGD|ASPL0000078272 [details] [associations]
            symbol:AN4330 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
            OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
            ProteinModelPortal:Q5B550 STRING:Q5B550
            EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
            Uniprot:Q5B550
        Length = 724

 Score = 136 (52.9 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 30/78 (38%), Positives = 49/78 (62%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L++ +LP S T+ SLAE F+++  +  A +V D  T +S+G+GFVT   VE+AK A+   
Sbjct:    39 LFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEEL 98

Query:   175 DGSVSADGICIAIVLIEP 192
             +GS + +G  I +   +P
Sbjct:    99 NGS-TFEGKKIKVEYAQP 115


>UNIPROTKB|F1S1L9 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
            Uniprot:F1S1L9
        Length = 551

 Score = 134 (52.2 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|K7GQE7 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
        Length = 555

 Score = 134 (52.2 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|Q8HXM1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
            UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
            SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            Uniprot:Q8HXM1
        Length = 572

 Score = 134 (52.2 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|K7GS58 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
            Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
        Length = 572

 Score = 134 (52.2 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|E2RP40 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
            RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
            KEGG:cfa:492015 Uniprot:E2RP40
        Length = 577

 Score = 134 (52.2 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|P33240 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=IDA]
            [GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
            polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
            evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0006369 "termination of RNA polymerase II transcription"
            evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
            GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
            Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
            EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
            PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
            PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
            DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
            PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
            Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
            KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
            HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
            neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
            OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
            GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
            CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
            Uniprot:P33240
        Length = 577

 Score = 134 (52.2 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|Q5RDA3 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=ISS]
            [GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
            ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
            KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
        Length = 577

 Score = 134 (52.2 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>MGI|MGI:1343054 [details] [associations]
            symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
            subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
            body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
            HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
            EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
            UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
            PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
            PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
            GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
            GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
            Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
            GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
        Length = 580

 Score = 134 (52.2 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|E1BVJ6 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
            Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
        Length = 592

 Score = 134 (52.2 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|F1MVI1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
            IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
            Uniprot:F1MVI1
        Length = 592

 Score = 134 (52.2 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|I3LE23 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
            "mRNA cleavage and polyadenylation specificity factor complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
            KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
            EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
            Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
        Length = 592

 Score = 134 (52.2 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|E7EWR4 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
            EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
            ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
            UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
            Uniprot:E7EWR4
        Length = 597

 Score = 134 (52.2 bits), Expect = 5.8e-08, P = 5.8e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|E1C8T0 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
            IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
            Uniprot:E1C8T0
        Length = 608

 Score = 134 (52.2 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>UNIPROTKB|G1K177 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
            EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
            Uniprot:G1K177
        Length = 644

 Score = 134 (52.2 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+PY  T   L ++F+E G V S  +VYDR T + +G+GF      E A  A+R  
Sbjct:    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query:   175 DG 176
             +G
Sbjct:    78 NG 79


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +++L++G L +S+   SL + F+  G VA   I YD+ + RSRGFGFV      +A  A 
Sbjct:    40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99

Query:   172 RLFDG 176
                DG
Sbjct:   100 DAMDG 104


>UNIPROTKB|G4MY43 [details] [associations]
            symbol:MGG_01268 "Nuclear localization sequence binding
            protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
            ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
            KEGG:mgr:MGG_01268 Uniprot:G4MY43
        Length = 486

 Score = 132 (51.5 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 26/56 (46%), Positives = 39/56 (69%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
             L+VGNL +++  + LAE F   GTV SA ++ DR + RS+GFG+V   + EEA++A
Sbjct:   241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKA 296

 Score = 124 (48.7 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 26/68 (38%), Positives = 39/68 (57%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L+VGNLP+     S+   F+E   V S  +  ++ + R +GFG+VT  SVE+AK A    
Sbjct:   344 LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQL 403

Query:   175 DGSVSADG 182
             +G  S +G
Sbjct:   404 NGQ-SING 410


>WB|WBGene00000774 [details] [associations]
            symbol:cpf-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
            interference" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
            vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
            GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
            RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
            DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
            PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
            GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
            WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
            NextBio:893824 Uniprot:O45577
        Length = 336

 Score = 129 (50.5 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 25/86 (29%), Positives = 49/86 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++VGN+ Y ++  ++  +F++AG V S ++V+DR T + +G+GF+    ++ A+ AIR  
Sbjct:    20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79

Query:   175 DGSVSADGICIAIVLIEPFNCQHFGN 200
             +G   +  I          N + FG+
Sbjct:    80 NGYELSGRILRVDSAAGGMNMEEFGS 105


>UNIPROTKB|A6QPJ1 [details] [associations]
            symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0010830 "regulation of myotube differentiation" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
            GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
            EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
            RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
            Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
            NextBio:20873922 Uniprot:A6QPJ1
        Length = 236

 Score = 125 (49.1 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>UNIPROTKB|Q9BX46 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
            EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
            RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
            UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
            IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
            DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
            Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
            UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
            HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
            InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
            GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
            CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
        Length = 236

 Score = 125 (49.1 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>MGI|MGI:3610364 [details] [associations]
            symbol:Rbm24 "RNA binding motif protein 24" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
            GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
            GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
            EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
            UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
            Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
            UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
        Length = 236

 Score = 125 (49.1 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>RGD|1584029 [details] [associations]
            symbol:Rbm24 "RNA binding motif protein 24" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
            "regulation of myotube differentiation" evidence=IEA;ISO]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
            OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
            UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
            Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
            NextBio:740266 Uniprot:D3ZLP6
        Length = 236

 Score = 125 (49.1 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 70

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    71 -DPNPIIDG 78


>UNIPROTKB|Q9H0Z9 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA;IDA] [GO:0010830 "regulation of myotube
            differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
            [GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
            response, signal transduction by p53 class mediator resulting in
            cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
            signal transduction by p53 class mediator resulting in
            transcription of p21 class mediator" evidence=IDA] [GO:0007050
            "cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
            of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
            mRNA stabilization" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
            GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
            GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
            HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
            EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
            RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
            ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
            PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
            Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
            KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
            H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
            neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
            EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
            ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
            Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
        Length = 239

 Score = 125 (49.1 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 93

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    94 -DPNPIIDG 101


>TAIR|locus:2172144 [details] [associations]
            symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
            HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
            EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
            ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
            PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
            KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
            InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
            ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
            Uniprot:Q9FIU6
        Length = 156

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 28/71 (39%), Positives = 40/71 (56%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +  L+V  L    TS  L   FA+ G VA A++V DRV+  S+GFGFV   ++E++ + I
Sbjct:    55 STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query:   172 RLFDGSVSADG 182
                DG    DG
Sbjct:   115 AGMDGKF-LDG 124


>TAIR|locus:2200975 [details] [associations]
            symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0006655
            "phosphatidylglycerol biosynthetic process" evidence=RCA]
            [GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
            [GO:0019288 "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
            RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
            SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
            KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
        Length = 294

 Score = 127 (49.8 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 30/64 (46%), Positives = 39/64 (60%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY-DRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             LYV N+P S   + L ++F   GTV S E+V  +  T  SRG G+VTMGS+  AK AI  
Sbjct:   110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169

Query:   174 FDGS 177
              DG+
Sbjct:   170 LDGT 173

 Score = 116 (45.9 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             ++YVGNLP+      L   F++ GT+ S  +++DR T R+R F F++  S EE ++A   
Sbjct:   214 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 272

Query:   174 FDGS 177
             F+G+
Sbjct:   273 FNGT 276


>UNIPROTKB|G4MR34 [details] [associations]
            symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
            subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
            ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
            GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
        Length = 305

 Score = 127 (49.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 21/58 (36%), Positives = 36/58 (62%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             ++VGN+PY ++   + ++F+ AG V +  +VYDR T + +GFGF      + A  A+R
Sbjct:    10 VFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVR 67


>UNIPROTKB|F1RUJ2 [details] [associations]
            symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0010830 "regulation of myotube differentiation" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
            EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
        Length = 254

 Score = 125 (49.1 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    30 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK- 88

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    89 -DPNPIIDG 96


>UNIPROTKB|Q3AF33 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             LYVGNLP+ + S  L E+ +E G V  A ++ ++ T RSRG+GF+ +   E+A++ +   
Sbjct:     5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMTGL 63

Query:   175 DG 176
             +G
Sbjct:    64 NG 65


>TIGR_CMR|CHY_0389 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
            GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             LYVGNLP+ + S  L E+ +E G V  A ++ ++ T RSRG+GF+ +   E+A++ +   
Sbjct:     5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMTGL 63

Query:   175 DG 176
             +G
Sbjct:    64 NG 65


>ASPGD|ASPL0000065384 [details] [associations]
            symbol:AN7706 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:BN001304 EMBL:AACD01000131 InterPro:IPR025715 Pfam:PF13865
            KO:K12881 eggNOG:NOG316507 OrthoDB:EOG4DV8WK RefSeq:XP_680975.1
            ProteinModelPortal:Q5AVH4 EnsemblFungi:CADANIAT00000838
            GeneID:2869696 KEGG:ani:AN7706.2 HOGENOM:HOG000174259 OMA:LHYDITE
            Uniprot:Q5AVH4
        Length = 328

 Score = 127 (49.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 30/74 (40%), Positives = 43/74 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RL + NL Y +T + L E+F+  G +++  +VYDR   RS G  +VT     +AK AI  
Sbjct:    87 RLRIENLHYDITETDLEELFSRIGPISNVSLVYDRA-GRSEGVAYVTYSRYNDAKTAIAE 145

Query:   174 FDGSVSADGICIAI 187
             FDG+ +A G  I I
Sbjct:   146 FDGA-NAKGQPIRI 158


>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
            symbol:rbm38 "RNA binding motif protein 38"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
            HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
            ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
            InParanoid:Q7T2V9 Uniprot:Q7T2V9
        Length = 246

 Score = 124 (48.7 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A+ A + 
Sbjct:    26 KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACK- 84

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    85 -DPNPIIDG 92


>WB|WBGene00006321 [details] [associations]
            symbol:sup-12 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
            "regulation of actin cytoskeleton organization" evidence=IGI]
            [GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
            binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
            intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
            complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
            GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 124 (48.7 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM---GSVEEA-KE 169
             +++VG LPY  +  +L E F + G +  A ++ DR T +SRG+GFVTM    S E A K+
Sbjct:    36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95

Query:   170 AIRLFDG 176
                + DG
Sbjct:    96 PNPIIDG 102


>UNIPROTKB|O45189 [details] [associations]
            symbol:sup-12 "Protein SUP-12, isoform a" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
            Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
            GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 124 (48.7 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM---GSVEEA-KE 169
             +++VG LPY  +  +L E F + G +  A ++ DR T +SRG+GFVTM    S E A K+
Sbjct:    36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95

Query:   170 AIRLFDG 176
                + DG
Sbjct:    96 PNPIIDG 102


>UNIPROTKB|E1C240 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
            EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
            IPI:IPI00584568 ProteinModelPortal:E1C240
            Ensembl:ENSGALT00000025475 Uniprot:E1C240
        Length = 388

 Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIK 212

Query:   173 LFDG 176
               +G
Sbjct:   213 GLNG 216

 Score = 114 (45.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP SMT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    69 LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTL 128

Query:   175 DG 176
             +G
Sbjct:   129 NG 130


>DICTYBASE|DDB_G0287335 [details] [associations]
            symbol:DDB_G0287335 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
            ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
            GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
            InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
            Uniprot:Q54KH9
        Length = 91

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 25/60 (41%), Positives = 41/60 (68%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG---SVEEAKEA 170
             +++V  LP+S+   +L + F++ G++  + +V D+VT RSRGFGFVT     SV++A EA
Sbjct:     4 KIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAMEA 63


>DICTYBASE|DDB_G0275027 [details] [associations]
            symbol:DDB_G0275027 "SRA stem-loop-interacting
            RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
            discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
            ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
            ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
            GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
            Uniprot:Q86I71
        Length = 91

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++V  LP+S+   +L   F++ G +    +V DRVT RS+GFGFV   S E  + AI  
Sbjct:     5 KIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINS 64

Query:   174 FDGSVSADGICIAIVLIEPF 193
              D  ++   + +   L + F
Sbjct:    65 -DNEINGRKLVVNEALAKDF 83


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>TAIR|locus:2164042 [details] [associations]
            symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] [GO:0006457 "protein folding"
            evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0042542 "response to hydrogen peroxide" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
            HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
            ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
            GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
            HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
            ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
        Length = 169

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             ++YVG LP++     L   F   G +    +V DR TDRS+G+GFVT    E A  A +
Sbjct:    14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72


>MGI|MGI:1889294 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
            [GO:0006978 "DNA damage response, signal transduction by p53 class
            mediator resulting in transcription of p21 class mediator"
            evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
            "cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
            of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
            GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
            GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
            EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
            IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
            ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
            PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
            Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
            KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
            NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
            GermOnline:ENSMUSG00000027510 Uniprot:Q62176
        Length = 237

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A  A + 
Sbjct:    33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACK- 91

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    92 -DPNPIIDG 99


>RGD|1308503 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in transcription of p21 class mediator" evidence=IEA]
            [GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
            regulation of cell proliferation" evidence=IEA] [GO:0010830
            "regulation of myotube differentiation" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
            IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
            Uniprot:D3ZGE9
        Length = 237

 Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LPY  T +SL + F   G +  A ++ DR T +SRG+GFVTM     A  A + 
Sbjct:    33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACK- 91

Query:   174 FDGSVSADG 182
              D +   DG
Sbjct:    92 -DPNPIIDG 99


>UNIPROTKB|D4A7H6 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
            SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
            Uniprot:D4A7H6
        Length = 346

 Score = 126 (49.4 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query:   175 DG 176
             +G
Sbjct:   101 NG 102


>UNIPROTKB|D4AAT0 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
            Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
        Length = 351

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   130 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 189

Query:   173 LFDG 176
               +G
Sbjct:   190 GLNG 193

 Score = 106 (42.4 bits), Expect = 0.00054, P = 0.00054
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    46 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 105

Query:   175 DG 176
             +G
Sbjct:   106 NG 107


>UNIPROTKB|H3BR27 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
            ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
            Ensembl:ENST00000568578 Uniprot:H3BR27
        Length = 78

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSAD 181
              +G ++ D
Sbjct:    69 MNGKMTVD 76


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
             RL+V  L    T+  L + FA  G +  A ++ DR + RS+GFGFVT  ++E+A++A
Sbjct:    35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKA 91


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             R +VG L ++     L   F++ G V  ++I+ DR + RSRGFGFVT    +  ++AI  
Sbjct:     7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query:   174 FDGSVSADGICIAI 187
              +G    DG  I +
Sbjct:    67 MNGK-ELDGRVITV 79


>ZFIN|ZDB-GENE-990415-246 [details] [associations]
            symbol:elavl4 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
            EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
            Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
            Uniprot:F1R133
        Length = 408

 Score = 127 (49.8 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   174 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIK 233

Query:   173 LFDG 176
               +G
Sbjct:   234 GLNG 237

 Score = 106 (42.4 bits), Expect = 0.00068, P = 0.00068
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    90 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 149

Query:   175 DG 176
             +G
Sbjct:   150 NG 151


>UNIPROTKB|Q12926 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=TAS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
            EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
            RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
            UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
            STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
            PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
            Ensembl:ENST00000380110 Ensembl:ENST00000380117
            Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
            KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
            GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
            neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
            OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
            ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
            Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
        Length = 359

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query:   175 DG 176
             +G
Sbjct:   101 NG 102


>RGD|628611 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
            UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
            PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
            ArrayExpress:Q8CH84 Genevestigator:Q8CH84
            GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
        Length = 359

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 105 (42.0 bits), Expect = 0.00075, P = 0.00075
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query:   120 LPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
             LP +MT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   +G
Sbjct:    46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102


>UNIPROTKB|Q8CH84 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
            UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
            PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
            ArrayExpress:Q8CH84 Genevestigator:Q8CH84
            GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
        Length = 359

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 105 (42.0 bits), Expect = 0.00075, P = 0.00075
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query:   120 LPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
             LP +MT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   +G
Sbjct:    46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102


>MGI|MGI:1100887 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
            IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
            ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
            PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
            Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
            InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
            GermOnline:ENSMUSG00000008489 Uniprot:Q60899
        Length = 360

 Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query:   175 DG 176
             +G
Sbjct:   101 NG 102


>UNIPROTKB|A2VDK5 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
            IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
            STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
            KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
        Length = 366

 Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   173 LFDG 176
               +G
Sbjct:   192 GLNG 195

 Score = 106 (42.4 bits), Expect = 0.00057, P = 0.00057
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query:   175 DG 176
             +G
Sbjct:   108 NG 109


>UNIPROTKB|J9PAL3 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
            RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
            Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
            Uniprot:J9PAL3
        Length = 366

 Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   173 LFDG 176
               +G
Sbjct:   192 GLNG 195

 Score = 106 (42.4 bits), Expect = 0.00057, P = 0.00057
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query:   175 DG 176
             +G
Sbjct:   108 NG 109


>UNIPROTKB|F1NLH0 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
            EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
            Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
        Length = 371

 Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   173 LFDG 176
               +G
Sbjct:   197 GLNG 200

 Score = 106 (42.4 bits), Expect = 0.00059, P = 0.00059
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112

Query:   175 DG 176
             +G
Sbjct:   113 NG 114


>UNIPROTKB|B1APY9 [details] [associations]
            symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
            protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
            SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
            Uniprot:B1APY9
        Length = 371

 Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   173 LFDG 176
               +G
Sbjct:   197 GLNG 200

 Score = 106 (42.4 bits), Expect = 0.00059, P = 0.00059
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112

Query:   175 DG 176
             +G
Sbjct:   113 NG 114


>RGD|1560027 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
            EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
            ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
            PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
            InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
            Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 106 (42.4 bits), Expect = 0.00059, P = 0.00059
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query:   175 DG 176
             +G
Sbjct:   101 NG 102


>UNIPROTKB|O09032 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
            CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
            RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
            SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
            KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
            ArrayExpress:O09032 Genevestigator:O09032
            GermOnline:ENSRNOG00000023601 Uniprot:O09032
        Length = 373

 Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 106 (42.4 bits), Expect = 0.00059, P = 0.00059
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100

Query:   175 DG 176
             +G
Sbjct:   101 NG 102


>UNIPROTKB|P26378 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
            eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
            EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
            EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
            EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
            IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
            RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
            RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
            PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
            MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
            PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
            Ensembl:ENST00000371823 Ensembl:ENST00000371824
            Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
            KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
            UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
            HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
            EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
            ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
            Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
        Length = 380

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   173 LFDG 176
               +G
Sbjct:   192 GLNG 195

 Score = 106 (42.4 bits), Expect = 0.00061, P = 0.00061
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query:   175 DG 176
             +G
Sbjct:   108 NG 109


>UNIPROTKB|F1LRX3 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
            Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
        Length = 380

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191

Query:   173 LFDG 176
               +G
Sbjct:   192 GLNG 195

 Score = 106 (42.4 bits), Expect = 0.00061, P = 0.00061
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107

Query:   175 DG 176
             +G
Sbjct:   108 NG 109


>UNIPROTKB|F1P856 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
            Ensembl:ENSCAFT00000006315 Uniprot:F1P856
        Length = 382

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   148 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 207

Query:   173 LFDG 176
               +G
Sbjct:   208 GLNG 211

 Score = 106 (42.4 bits), Expect = 0.00062, P = 0.00062
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    64 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 123

Query:   175 DG 176
             +G
Sbjct:   124 NG 125


>UNIPROTKB|F1LRL1 [details] [associations]
            symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
            Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
        Length = 384

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   136 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 195

Query:   173 LFDG 176
               +G
Sbjct:   196 GLNG 199

 Score = 106 (42.4 bits), Expect = 0.00062, P = 0.00062
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    52 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 111

Query:   175 DG 176
             +G
Sbjct:   112 NG 113


>UNIPROTKB|B1APY8 [details] [associations]
            symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
            EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
            IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
            Uniprot:B1APY8
        Length = 385

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   173 LFDG 176
               +G
Sbjct:   197 GLNG 200

 Score = 106 (42.4 bits), Expect = 0.00062, P = 0.00062
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112

Query:   175 DG 176
             +G
Sbjct:   113 NG 114


>MGI|MGI:107427 [details] [associations]
            symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
            EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
            PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
            ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
            PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
            Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
            InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
            Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
        Length = 385

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

Query:   173 LFDG 176
               +G
Sbjct:   197 GLNG 200

 Score = 106 (42.4 bits), Expect = 0.00062, P = 0.00062
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112

Query:   175 DG 176
             +G
Sbjct:   113 NG 114


>UNIPROTKB|B1AM49 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
            UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
            Ensembl:ENST00000359598 Uniprot:B1AM49
        Length = 387

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212

Query:   173 LFDG 176
               +G
Sbjct:   213 GLNG 216

 Score = 110 (43.8 bits), Expect = 0.00016, P = 0.00016
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128

Query:   175 DG 176
             +G
Sbjct:   129 NG 130


>ZFIN|ZDB-GENE-040704-9 [details] [associations]
            symbol:elavl2 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
            IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
            Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
        Length = 388

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   154 ANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIK 213

Query:   173 LFDG 176
               +G
Sbjct:   214 GLNG 217

 Score = 111 (44.1 bits), Expect = 0.00012, P = 0.00012
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTL 129

Query:   175 DG 176
             +G
Sbjct:   130 NG 131


>UNIPROTKB|G3N063 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
            EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
        Length = 388

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213

Query:   173 LFDG 176
               +G
Sbjct:   214 GLNG 217

 Score = 110 (43.8 bits), Expect = 0.00016, P = 0.00016
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129

Query:   175 DG 176
             +G
Sbjct:   130 NG 131


>UNIPROTKB|E2RI94 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
            EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
            Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
        Length = 388

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213

Query:   173 LFDG 176
               +G
Sbjct:   214 GLNG 217

 Score = 110 (43.8 bits), Expect = 0.00016, P = 0.00016
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT   L  +F   G + S ++V D++T +S G+GFV     ++A++AI   
Sbjct:    70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129

Query:   175 DG 176
             +G
Sbjct:   130 NG 131


>UNIPROTKB|Q91903 [details] [associations]
            symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
            laevis" [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
            development" evidence=IMP] [GO:0008298 "intracellular mRNA
            localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
            polyadenylylation element binding" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0051260 "protein homooligomerization" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
            GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
            GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
            HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
            EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
            RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
            ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
            GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
            CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
            Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
        Length = 389

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212

Query:   173 LFDG 176
               +G
Sbjct:   213 GLNG 216


>UNIPROTKB|F1SNK9 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
            EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
        Length = 400

 Score = 126 (49.4 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +MT   L ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   165 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 224

Query:   173 LFDG 176
               +G
Sbjct:   225 GLNG 228


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L++G L ++    +L + F+  G ++   +V DR T RSRGF F+T  + E A +A+R  
Sbjct:     8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67

Query:   175 DGSVSADG 182
             +G  S DG
Sbjct:    68 NGK-SLDG 74


>UNIPROTKB|J3KQA8 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
        Length = 102

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 28/77 (36%), Positives = 40/77 (51%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L +  T  SL   F + GT+    ++ D  T RSRGFGFVT  +VEE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   174 FDGSVSADGICIAIVLI 190
                 V  DG  +   +I
Sbjct:    75 RPHKV--DGRVVEATMI 89


>UNIPROTKB|E1P5S2 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
            [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
            SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
        Length = 373

 Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:    94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153

Query:   174 FDG 176
              +G
Sbjct:   154 LNG 156


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 121 (47.7 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 25/79 (31%), Positives = 43/79 (54%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             R ++G L ++ +   L + F + G +  A++V D+ + RSRGFGF+T    +   EAI  
Sbjct:     8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67

Query:   174 FDGSVSADGICIAIVLIEP 192
              +G +  DG  I +   +P
Sbjct:    68 MNG-MDLDGRTITVDKAQP 85


>ASPGD|ASPL0000076731 [details] [associations]
            symbol:AN4865 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
            KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
            ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
            EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
            HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
        Length = 524

 Score = 127 (49.8 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 33/89 (37%), Positives = 45/89 (50%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L+VGNLP+S    S+ EVF   G V    +  D  + R +GFG+V   SV+EA++A    
Sbjct:   386 LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNEL 445

Query:   175 DGSVSADGICIAIVLIEP-FNCQHFGNGR 202
              G+   DG  I +    P  N    G GR
Sbjct:   446 QGA-EIDGRPIRLDFSTPRANNGGGGGGR 473

 Score = 106 (42.4 bits), Expect = 0.00098, P = 0.00098
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
             +A L+VGNL +++T   L + F + G + SA I+ +R T RSRGFG+V   +  +A +A
Sbjct:   276 SANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKA 333


>DICTYBASE|DDB_G0292698 [details] [associations]
            symbol:DDB_G0292698 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
            EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
            RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
            PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
            KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
        Length = 306

 Score = 123 (48.4 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 31/73 (42%), Positives = 39/73 (53%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L+V NL      S L + FA  G V    I+ D  T  SRGFGFVT  S +EA++AI+  
Sbjct:    73 LHVSNLNPRTRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEAQDAIQRL 132

Query:   175 DGSVSADGICIAI 187
             D S   DG  I +
Sbjct:   133 D-STKIDGNTIRV 144


>UNIPROTKB|F8W646 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
            ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
            Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
            Uniprot:F8W646
        Length = 156

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL   F + GT+    ++ D  T RSRGFGFVT  +VEE   A+
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72


>UNIPROTKB|G3XAC6 [details] [associations]
            symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
            isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
            UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
            ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
            ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
        Length = 423

 Score = 125 (49.1 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:   251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query:   174 FDG 176
              +G
Sbjct:   311 LNG 313


>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
            symbol:rbm39a "RNA binding motif protein 39a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
            KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
            IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
            Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
            KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
        Length = 523

 Score = 126 (49.4 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:   247 RLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 306

Query:   174 FDG 176
              +G
Sbjct:   307 LNG 309


>UNIPROTKB|F1NYA2 [details] [associations]
            symbol:LOC100859865 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00530000063406 EMBL:AADN02026007 IPI:IPI00581340
            ProteinModelPortal:F1NYA2 Ensembl:ENSGALT00000001999 Uniprot:F1NYA2
        Length = 146

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query:   116 YVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
             YVGNLP++     +  +F +  +V S  +V D+ TD+ +GF +V    VE  KEA+  +D
Sbjct:    43 YVGNLPFNTVQGDIDAIFKDL-SVRSVRLVRDKETDKFKGFCYVEFDEVESLKEALT-YD 100

Query:   176 GSVSAD 181
             G++  D
Sbjct:   101 GALLGD 106


>UNIPROTKB|I3LBN9 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
            Uniprot:I3LBN9
        Length = 280

 Score = 121 (47.7 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 30/68 (44%), Positives = 40/68 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  L    T S L EVF++ G +A   IVYD+ + RSRGF FV   +V++AKEA    
Sbjct:   112 LGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 171

Query:   175 DGSVSADG 182
             +G +  DG
Sbjct:   172 NG-MELDG 178


>TAIR|locus:2077392 [details] [associations]
            symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
            ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
            EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
            OMA:YYIGNTN Uniprot:F4JFN7
        Length = 495

 Score = 125 (49.1 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +++VG LP S+T S     F + GT     ++YD  T R RGFGF+T  S EEA E + L
Sbjct:   109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS-EEAVEKVLL 167


>FB|FBgn0031883 [details] [associations]
            symbol:CG11266 species:7227 "Drosophila melanogaster"
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
            KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
            GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
            RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
            STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
            UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
        Length = 594

 Score = 126 (49.4 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 22/63 (34%), Positives = 41/63 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + + +++ D  T RS+G+GF+T  + ++AK+A+  
Sbjct:   336 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395

Query:   174 FDG 176
              +G
Sbjct:   396 LNG 398


>TAIR|locus:2025092 [details] [associations]
            symbol:SR45a "serine/arginine rich-like protein 45a"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
            "RNA splicing" evidence=NAS] [GO:0009644 "response to high light
            intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
            GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
            EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
            ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
            EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
            TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
            ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
            Uniprot:Q84TH4
        Length = 382

 Score = 123 (48.4 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 28/64 (43%), Positives = 36/64 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             LYV  L + +T   L + FA+ G V    +V D  T  SRGFGF++M SV +A   IR  
Sbjct:    77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136

Query:   175 DGSV 178
             D SV
Sbjct:   137 DHSV 140


>RGD|1310071 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10116
            "Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
            "centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
            HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
            KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
            KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
            RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
            GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
            NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
        Length = 524

 Score = 125 (49.1 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:   251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query:   174 FDG 176
              +G
Sbjct:   311 LNG 313


>UNIPROTKB|F6QIA5 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
            Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
        Length = 525

 Score = 125 (49.1 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:   251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query:   174 FDG 176
              +G
Sbjct:   311 LNG 313


>UNIPROTKB|F2Z5I2 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 EMBL:CU210870
            Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
        Length = 525

 Score = 125 (49.1 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:   251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query:   174 FDG 176
              +G
Sbjct:   311 LNG 313


>UNIPROTKB|E1BRU3 [details] [associations]
            symbol:LOC100858247 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
            IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
        Length = 529

 Score = 125 (49.1 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:   251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query:   174 FDG 176
              +G
Sbjct:   311 LNG 313


>UNIPROTKB|E2R4L0 [details] [associations]
            symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
            EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
            SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
            KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
        Length = 530

 Score = 125 (49.1 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:   251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query:   174 FDG 176
              +G
Sbjct:   311 LNG 313


>UNIPROTKB|Q14498 [details] [associations]
            symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
            "centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
            EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
            EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
            PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
            RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
            PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
            MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
            PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
            Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
            KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
            GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
            neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
            InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
            GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
            CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
            Uniprot:Q14498
        Length = 530

 Score = 125 (49.1 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:   251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query:   174 FDG 176
              +G
Sbjct:   311 LNG 313


>MGI|MGI:2157953 [details] [associations]
            symbol:Rbm39 "RNA binding motif protein 39" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
            "transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
            DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
            GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
            EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
            EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
            HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
            ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
            EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
            IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
            UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
            PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
            STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
            Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
            Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
            GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
            EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
            CleanEx:MM_RBM39 Genevestigator:Q8VH51
            GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
        Length = 530

 Score = 125 (49.1 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:   251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query:   174 FDG 176
              +G
Sbjct:   311 LNG 313


>UNIPROTKB|F1MA64 [details] [associations]
            symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
            KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
            IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
            SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
            KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
        Length = 530

 Score = 125 (49.1 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             RLYVG+L +++T   L  +F   G + S +++ D  T RS+G+GF+T    E AK+A+  
Sbjct:   251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query:   174 FDG 176
              +G
Sbjct:   311 LNG 313


>POMBASE|SPAC328.05 [details] [associations]
            symbol:SPAC328.05 "RNA-binding protein involved in export
            of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
            "cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
            nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
            GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
            OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
            EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
            Uniprot:Q9P3U1
        Length = 464

 Score = 124 (48.7 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VGNLPY++    L ++F +AG+V  A+I  ++   RSRG G V M S++EA  AI++
Sbjct:   180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQ-EGRSRGIGIVVMSSMKEAMHAIQM 238

 Score = 114 (45.2 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             +YVGNLP++ +  +L ++F + G+V  A I Y+  T RS+GFG V   +  +A  +I   
Sbjct:   312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370

Query:   175 DG 176
             +G
Sbjct:   371 NG 372


>FB|FBgn0064117 [details] [associations]
            symbol:CG33714 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
            GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
            RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
            EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
            GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
            FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
            NextBio:854180 Uniprot:Q0KHQ1
        Length = 90

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
             R++VGNLP+++    L   F E G V SA +++D+ T  S+G+GFV+  S+
Sbjct:    16 RIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSL 66


>TAIR|locus:2027438 [details] [associations]
            symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
            evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
            GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
            EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
            UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
            SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
            EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
            GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
            OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
            Genevestigator:Q9FZ84 Uniprot:Q9FZ84
        Length = 155

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 27/75 (36%), Positives = 38/75 (50%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             ++++VG L  S     L E F   G +  A +V DR +  SRGFGFVT  S+E A  A++
Sbjct:    36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95

Query:   173 LFDGSVSADGICIAI 187
                     DG  I +
Sbjct:    96 AMQNK-ELDGRIIGV 109


>WB|WBGene00011155 [details] [associations]
            symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
            SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
            PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
            KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
            InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
        Length = 83

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             +YVGN P+  T   L   F+  G + +  IV DR T R RGF F+       A+ A+   
Sbjct:     7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66

Query:   175 DGS 177
             +G+
Sbjct:    67 NGA 69


>UNIPROTKB|F1P5I0 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
        Length = 288

 Score = 120 (47.3 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 67


>UNIPROTKB|H0Y6E7 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
            Uniprot:H0Y6E7
        Length = 292

 Score = 120 (47.3 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:    11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    71 MNGK-SLDGKAIKV 83


>UNIPROTKB|H3BT71 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
            SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
        Length = 296

 Score = 120 (47.3 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>UNIPROTKB|Q96E39 [details] [associations]
            symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
            eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
            RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
            SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
            PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
            Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
            UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
            neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
            PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
            ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
        Length = 390

 Score = 122 (48.0 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>UNIPROTKB|K7GRX3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
            Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
            Uniprot:K7GRX3
        Length = 306

 Score = 120 (47.3 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>TAIR|locus:2039590 [details] [associations]
            symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
            IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
            ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
            EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
            TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
            PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
            Uniprot:Q1ECN0
        Length = 116

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 23/72 (31%), Positives = 43/72 (59%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             ++ L+V  + +S T  +L + F++ G V   +++ D++  R +GF +VT  S EEA++A+
Sbjct:    20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79

Query:   172 -----RLFDGSV 178
                  +L DG V
Sbjct:    80 LELNAQLVDGRV 91


>UNIPROTKB|F1NBB6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
        Length = 310

 Score = 120 (47.3 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    22 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 79


>RGD|2321074 [details] [associations]
            symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
            PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
            ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
        Length = 320

 Score = 120 (47.3 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93


>UNIPROTKB|E7EWI9 [details] [associations]
            symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
            ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
            SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
            Uniprot:E7EWI9
        Length = 322

 Score = 120 (47.3 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 71


>UNIPROTKB|E2R3E1 [details] [associations]
            symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
            Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
        Length = 429

 Score = 122 (48.0 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             ++VGNLPY +  S++ E F + G++ +  IV DRVT   RGFG+V   + +    A++L
Sbjct:   289 VFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFENTDAVHLALKL 347


>UNIPROTKB|F1N9I5 [details] [associations]
            symbol:ELAVL1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
            EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
            Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
        Length = 326

 Score = 120 (47.3 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LY+  LP SMT   + ++F+  G + ++ ++ D+ T  SRG  F+      EA+EAI 
Sbjct:   106 ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165

Query:   173 LFDG 176
              F+G
Sbjct:   166 NFNG 169

 Score = 113 (44.8 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT   L  +F+  G V SA+++ D+V   S G+GFV   + ++A+ AI   
Sbjct:    22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81

Query:   175 DG 176
             +G
Sbjct:    82 NG 83


>TAIR|locus:2133862 [details] [associations]
            symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
            metabolic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
            RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
            ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
            EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
            TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
            ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
        Length = 455

 Score = 122 (48.0 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +++VG LP S+T +     F + GT+A   ++YD  T R RGFGF+T  S EE+ + +
Sbjct:   123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-EESVDMV 179


>DICTYBASE|DDB_G0284167 [details] [associations]
            symbol:DDB_G0284167 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0284167 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000063 eggNOG:COG0724 RefSeq:XP_638767.1
            ProteinModelPortal:Q54Q30 STRING:Q54Q30 EnsemblProtists:DDB0233340
            GeneID:8624438 KEGG:ddi:DDB_G0284167 InParanoid:Q54Q30 OMA:DASANNE
            Uniprot:Q54Q30
        Length = 293

 Score = 115 (45.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
 Identities = 27/79 (34%), Positives = 43/79 (54%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L+V N+PYS     L E F +     SA ++ ++ T+RS+GFGFV    V   ++ + L 
Sbjct:   202 LFVRNIPYSFDDVKLLETFKDCSP-KSAHVIVNKHTNRSKGFGFVEFDDVANQQKGLTLN 260

Query:   175 DGSVSADGICIAIVLI-EP 192
               SV +  + + I L+ EP
Sbjct:   261 KLSVESRELSVKIALVPEP 279

 Score = 110 (43.8 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 26/65 (40%), Positives = 38/65 (58%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             A R++VGNL  ++ SS+L   FAE G V S  I+  +   +S  FGFV M  +E A +A+
Sbjct:    16 AHRIFVGNLTENVESSTLETAFAEFGKVLSVRIIKKKF--KSNTFGFVDMEDLETANKAV 73

Query:   172 RLFDG 176
                +G
Sbjct:    74 AAING 78

 Score = 38 (18.4 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query:    17 KLYNLQAITQIPTNHLP---SLFKTKSPKPLKLEKAQN 51
             K  N++   +  T   P   S  KT++PKP      +N
Sbjct:    84 KQVNVEIAREKSTESKPKRTSTRKTRTPKPTSTTTGEN 121


>UNIPROTKB|Q83D11 [details] [associations]
            symbol:CBU_0935 "RNA binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 22/58 (37%), Positives = 38/58 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             ++YVGNLPY +  + L + F+  G + S +IV +  T RS+G+ FVT  + ++A +A+
Sbjct:    45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKAL 102


>TIGR_CMR|CBU_0935 [details] [associations]
            symbol:CBU_0935 "RNA-binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 22/58 (37%), Positives = 38/58 (65%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             ++YVGNLPY +  + L + F+  G + S +IV +  T RS+G+ FVT  + ++A +A+
Sbjct:    45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKAL 102


>TAIR|locus:2164082 [details] [associations]
            symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
            HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
            ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
            GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
            InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
            ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
        Length = 100

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
             ++YV  LP+   +  L   F   G +  A++V D  T RS+GFGFVT   VE A  A
Sbjct:    10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66


>WB|WBGene00004984 [details] [associations]
            symbol:spn-4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0060465 "pharynx development" evidence=IMP] [GO:0009790 "embryo
            development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0043186 "P granule" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0060465 GO:GO:0043186 HSSP:P09651
            GeneTree:ENSGT00390000013767 KO:K14946 EMBL:FO081573 EMBL:AB052819
            PIR:T29369 RefSeq:NP_504717.1 UniGene:Cel.6040
            ProteinModelPortal:G5EF02 SMR:G5EF02 IntAct:G5EF02
            EnsemblMetazoa:ZC404.8.1 EnsemblMetazoa:ZC404.8.2 GeneID:179070
            KEGG:cel:CELE_ZC404.8 CTD:179070 WormBase:ZC404.8 OMA:FTDNRIY
            NextBio:903784 Uniprot:G5EF02
        Length = 351

 Score = 120 (47.3 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 27/58 (46%), Positives = 36/58 (62%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR-SRGFGFVTMGSVEEAKEA 170
             R+YV N+P+S     LA +F   G V S EIV     DR S+GFGFVT+ S+E  ++A
Sbjct:    52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIV---TNDRGSKGFGFVTLDSIESCEKA 106


>UNIPROTKB|F1LNG4 [details] [associations]
            symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
            Uniprot:F1LNG4
        Length = 357

 Score = 120 (47.3 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 71


>UNIPROTKB|F1PVV1 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
            Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
        Length = 367

 Score = 120 (47.3 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +M+   + ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 107 (42.7 bits), Expect = 0.00040, P = 0.00040
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV      +A +AI   
Sbjct:    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query:   175 DG 176
             +G
Sbjct:   101 NG 102


>UNIPROTKB|Q14576 [details] [associations]
            symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
            "nervous system development" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0017091 "AU-rich element
            binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
            EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
            RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
            SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
            PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
            Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
            KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
            GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
            neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
            PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
            ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
            Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
        Length = 367

 Score = 120 (47.3 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +M+   + ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 107 (42.7 bits), Expect = 0.00040, P = 0.00040
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV      +A +AI   
Sbjct:    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query:   175 DG 176
             +G
Sbjct:   101 NG 102


>UNIPROTKB|F1SA16 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
            Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
        Length = 367

 Score = 120 (47.3 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +M+   + ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 107 (42.7 bits), Expect = 0.00040, P = 0.00040
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV      +A +AI   
Sbjct:    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query:   175 DG 176
             +G
Sbjct:   101 NG 102


>UNIPROTKB|F1N4V6 [details] [associations]
            symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
            IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
        Length = 368

 Score = 120 (47.3 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A LYV  LP +M+   + ++F++ G + ++ I+ D+VT  SRG GF+      EA+EAI+
Sbjct:   125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184

Query:   173 LFDG 176
               +G
Sbjct:   185 GLNG 188

 Score = 107 (42.7 bits), Expect = 0.00041, P = 0.00041
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  LP +MT      +F   G + S ++V D++T +S G+GFV      +A +AI   
Sbjct:    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100

Query:   175 DG 176
             +G
Sbjct:   101 NG 102


>UNIPROTKB|E2RFV7 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
            EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
            Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
            Uniprot:E2RFV7
        Length = 378

 Score = 120 (47.3 bits), Expect = 9.1e-07, P = 9.1e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93


>UNIPROTKB|P51991 [details] [associations]
            symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
            "ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
            GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
            EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
            HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
            IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
            UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
            IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
            DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
            Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
            KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
            HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
            InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
            GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
            ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
            Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
        Length = 378

 Score = 120 (47.3 bits), Expect = 9.1e-07, P = 9.1e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93


>UNIPROTKB|F2Z5B4 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
            RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
            Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
            Uniprot:F2Z5B4
        Length = 379

 Score = 120 (47.3 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93


>RGD|727807 [details] [associations]
            symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
            "ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
            projection" evidence=IDA] [GO:0051028 "mRNA transport"
            evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
            evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
            GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
            EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
            IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
            RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
            ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
            PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
            UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
            ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
            GO:GO:0051033 Uniprot:Q6URK4
        Length = 379

 Score = 120 (47.3 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93


>UNIPROTKB|E1BZE6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00812068 ProteinModelPortal:E1BZE6
            Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
        Length = 380

 Score = 120 (47.3 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    34 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 91


>UNIPROTKB|E1BEG2 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
            IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
        Length = 380

 Score = 120 (47.3 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:    36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93


>UNIPROTKB|F1NZD3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
            InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
            EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
            Uniprot:F1NZD3
        Length = 385

 Score = 120 (47.3 bits), Expect = 9.4e-07, P = 9.4e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>UNIPROTKB|F1RQ90 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
            UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
            Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
            Uniprot:F1RQ90
        Length = 390

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>RGD|1565256 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0070062
            "extracellular vesicular exosome" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
            GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
            EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
            UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
            STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
            Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
            InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
            Uniprot:Q4V898
        Length = 390

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>TAIR|locus:2094922 [details] [associations]
            symbol:PAB6 "poly(A) binding protein 6" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
            initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
            GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
            EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
            HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
            ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
            GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
            OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
            Genevestigator:O04319 Uniprot:O04319
        Length = 537

 Score = 122 (48.0 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 30/79 (37%), Positives = 45/79 (56%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             + LYV NL  SM  + L E+F   G + SA+++      RS+GFGFV   + EE+K+A R
Sbjct:   304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKR 362

Query:   173 LFDGSVSADGICIAIVLIE 191
               +G +  DG  I + + E
Sbjct:   363 YLNGFL-VDGKPIVVRVAE 380


>UNIPROTKB|D3JUI8 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9913 "Bos taurus" [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
            "extracellular vesicular exosome" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
            evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
            EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
            Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
            NextBio:20869035 Uniprot:D3JUI8
        Length = 391

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>UNIPROTKB|P38159 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
            euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
            GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
            EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
            EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
            IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
            RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
            ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
            MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
            SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
            Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
            KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
            MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
            InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
            NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
            Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
        Length = 391

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>UNIPROTKB|A5A6M3 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9598 "Pan troglodytes" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
            ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
            KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
        Length = 391

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>UNIPROTKB|Q4R7F0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
            Uniprot:Q4R7F0
        Length = 391

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>MGI|MGI:1343044 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X chromosome"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
            EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
            EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
            RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
            SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
            PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
            Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
            UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
            Genevestigator:Q9WV02 Uniprot:Q9WV02
        Length = 391

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>UNIPROTKB|E2R068 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
            Uniprot:E2R068
        Length = 392

 Score = 120 (47.3 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:    10 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 69

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    70 MNGK-SLDGKAIKV 82


>DICTYBASE|DDB_G0290307 [details] [associations]
            symbol:DDB_G0290307 "ELAVL1-like protein"
            species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
            ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
            KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
        Length = 459

 Score = 121 (47.7 bits), Expect = 9.8e-07, P = 9.8e-07
 Identities = 29/73 (39%), Positives = 41/73 (56%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             LYV NLP     S L  +F+  G +AS +IV D+ T   RG+GFV M S+ ++  AI   
Sbjct:   384 LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINSI 443

Query:   175 DGSVSADGICIAI 187
             +G V   G  I++
Sbjct:   444 NG-VQVGGKTISV 455

 Score = 107 (42.7 bits), Expect = 0.00057, P = 0.00057
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +  L++  LP + TS +L  +F+  G + S  ++ D  T  SRGFGFV    V  A+ AI
Sbjct:    98 SGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAI 157

Query:   172 RLFDGS 177
                +G+
Sbjct:   158 NSMNGA 163


>UNIPROTKB|Q29RT0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
            of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
            euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
            RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
            SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
            KEGG:bta:617969 KEGG:bta:782306 CTD:27288
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
            NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
        Length = 396

 Score = 120 (47.3 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 26/74 (35%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       SL   F + G ++   ++ DR T++SRGF F+T  S  +AK A+R 
Sbjct:     9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>UNIPROTKB|I3LH22 [details] [associations]
            symbol:LOC100514264 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU915617
            Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
        Length = 161

 Score = 114 (45.2 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 25/69 (36%), Positives = 38/69 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L+VG L ++    +L +  +    ++   IV DR T RSRGFGF+T  + E A   +R 
Sbjct:     7 KLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRA 66

Query:   174 FDGSVSADG 182
              +G  S DG
Sbjct:    67 MNGE-SLDG 74


>UNIPROTKB|K7GMF5 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
        Length = 80

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:    11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70

Query:   174 FDGSV 178
              +G +
Sbjct:    71 MNGKM 75


>WB|WBGene00001368 [details] [associations]
            symbol:exc-7 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0002064 "epithelial cell development"
            evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
            [GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
            OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
            ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
            MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
            GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
            InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
        Length = 456

 Score = 120 (47.3 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             + LYV  +P SMT   L  +F   G + ++ I+ D VT  S+G GFV     +EA  AI+
Sbjct:   128 SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIK 187

Query:   173 LFDGSV 178
               +GS+
Sbjct:   188 TLNGSI 193

 Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
 Identities = 31/108 (28%), Positives = 53/108 (49%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L +  LP  MT   +  +F   G + S ++V D+VT +S G+GFV     E+A  A+  F
Sbjct:    44 LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSF 103

Query:   175 DGSVSADGICIAIVLIEPFNCQHFGNGRCLVFLSYI--ILDVHSIHSM 220
             +G +      I +    P N Q  G+    +++S I   + +H + S+
Sbjct:   104 NG-LRLQNKTIKVSYARPSNDQIKGSN---LYVSGIPKSMTLHELESI 147


>UNIPROTKB|K7GQ39 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
        Length = 101

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:    11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70

Query:   174 FDG 176
              +G
Sbjct:    71 MNG 73


>UNIPROTKB|Q47X92 [details] [associations]
            symbol:CPS_3920 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            HOGENOM:HOG000276232 RefSeq:YP_270578.1 ProteinModelPortal:Q47X92
            STRING:Q47X92 GeneID:3522867 KEGG:cps:CPS_3920 PATRIC:21470731
            eggNOG:NOG258387 OMA:HELEGRQ ProtClustDB:CLSK913470
            BioCyc:CPSY167879:GI48-3933-MONOMER Uniprot:Q47X92
        Length = 78

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 29/75 (38%), Positives = 42/75 (56%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR- 172
             +L V NL  S T   L  +F+  GTVA   +V D+ T +S+GF FV M +  EAK A+  
Sbjct:     2 KLLVRNLSRSTTEQELRILFSAHGTVAECSLVLDQATAKSKGFAFVEMPNEAEAKVALSS 61

Query:   173 LFDGSVSADGICIAI 187
             L +  V+ + I + I
Sbjct:    62 LHETRVAKNKIRVKI 76


>TIGR_CMR|CPS_3920 [details] [associations]
            symbol:CPS_3920 "RNA-binding protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CP000083 GenomeReviews:CP000083_GR HOGENOM:HOG000276232
            RefSeq:YP_270578.1 ProteinModelPortal:Q47X92 STRING:Q47X92
            GeneID:3522867 KEGG:cps:CPS_3920 PATRIC:21470731 eggNOG:NOG258387
            OMA:HELEGRQ ProtClustDB:CLSK913470
            BioCyc:CPSY167879:GI48-3933-MONOMER Uniprot:Q47X92
        Length = 78

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 29/75 (38%), Positives = 42/75 (56%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR- 172
             +L V NL  S T   L  +F+  GTVA   +V D+ T +S+GF FV M +  EAK A+  
Sbjct:     2 KLLVRNLSRSTTEQELRILFSAHGTVAECSLVLDQATAKSKGFAFVEMPNEAEAKVALSS 61

Query:   173 LFDGSVSADGICIAI 187
             L +  V+ + I + I
Sbjct:    62 LHETRVAKNKIRVKI 76


>UNIPROTKB|Q9DDU8 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
            EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
            UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
            GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
            Uniprot:Q9DDU8
        Length = 289

 Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 30/68 (44%), Positives = 39/68 (57%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  L    T   L EVF++ G +A   IVYD+ + RSRGF FV   +VE+AKEA    
Sbjct:   120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERA 179

Query:   175 DGSVSADG 182
             +G +  DG
Sbjct:   180 NG-MELDG 186


>GENEDB_PFALCIPARUM|PFF0760w [details] [associations]
            symbol:PFF0760w "RNA and export factor binding
            protein, putative" species:5833 "Plasmodium falciparum" [GO:0003723
            "RNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL844505 RefSeq:XP_966143.1
            ProteinModelPortal:C6KSZ8 EnsemblProtists:PFF0760w:mRNA
            GeneID:3885869 KEGG:pfa:PFF0760w EuPathDB:PlasmoDB:PF3D7_0615700
            HOGENOM:HOG000281520 ProtClustDB:CLSZ2444924 Uniprot:C6KSZ8
        Length = 156

 Score = 112 (44.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 26/81 (32%), Positives = 46/81 (56%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             R+ + NL Y+++ + L E+F+    V +A I YD  TDRS G       ++ +A++AI  
Sbjct:    65 RVKISNLDYTISKNDLMELFSNVCKVVNAWINYDH-TDRSNGTAVCVFENINDAQKAIDK 123

Query:   174 FDGSVSADGICIAIVLIEPFN 194
             +DGS   +G+ I + ++   N
Sbjct:   124 YDGS-EIEGLSIKMEILHKRN 143


>DICTYBASE|DDB_G0283687 [details] [associations]
            symbol:DDB_G0283687 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
            RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
            EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
            InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
        Length = 727

 Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 33/106 (31%), Positives = 54/106 (50%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             ++V  L  ++    L+++F++AGTV +  ++ D+VT R +G G+V     E   +AI L 
Sbjct:   268 VFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMVDKAIAL- 326

Query:   175 DGSVSADGICIAIVLIEP------FNCQHFGNGRCLVFLSYIILDV 214
              GSV  DG  I +  I+P       N      G   +++ YI L V
Sbjct:   327 SGSV-LDGQQILVHSIQPEKKVIKSNSTGSSGGESRIYVGYIHLSV 371


>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
            symbol:tra2a "transformer-2 alpha" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
            UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
            Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
            InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
        Length = 297

 Score = 119 (46.9 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V  L    T   L EVF+  G++A   +VYD+ T RSRGF FV    +++AKEA+   
Sbjct:   137 LGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERA 196

Query:   175 DGSVSADG 182
             +G +  DG
Sbjct:   197 NG-MELDG 203


>SGD|S000005483 [details] [associations]
            symbol:HRP1 "Subunit of cleavage factor I" species:4932
            "Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
            [GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
            [GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
            EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
            EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
            RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
            ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
            MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
            EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
            HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
            EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
            GermOnline:YOL123W Uniprot:Q99383
        Length = 534

 Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 25/70 (35%), Positives = 40/70 (57%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM---GSVEEAK 168
             + ++++G L +  T  +L E F + GTV   +I+ D  T RSRGFGF++     SV+E  
Sbjct:   158 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 217

Query:   169 EAIRLFDGSV 178
             +   + DG V
Sbjct:   218 KTQHILDGKV 227


>TAIR|locus:2050024 [details] [associations]
            symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
            eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
            IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
            ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
            PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
            KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
            InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
            ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
        Length = 1003

 Score = 123 (48.4 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 27/66 (40%), Positives = 38/66 (57%)

Query:   112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             AA + V  LPYS+T++ L E F+E G V    +V ++ +D  RGF FV     E+   AI
Sbjct:    19 AATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAI 78

Query:   172 RLFDGS 177
              L +GS
Sbjct:    79 ELKNGS 84


>UNIPROTKB|F1M460 [details] [associations]
            symbol:F1M460 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
            ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
            ArrayExpress:F1M460 Uniprot:F1M460
        Length = 224

 Score = 118 (46.6 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 25/58 (43%), Positives = 33/58 (56%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L +G L +  T  SL E F + GT+    ++ D  T RSRGFGFVT   VEE   A+
Sbjct:     9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAV 66


>FB|FBgn0037602 [details] [associations]
            symbol:CG8021 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
            [GO:0035145 "exon-exon junction complex" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
            GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
            RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
            EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
            UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
            OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
        Length = 91

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
             +L+VGNLP+++ S  L   F++ G VA+AE+V+DR    S+ +GFV
Sbjct:    11 KLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFV 56


>FB|FBgn0264270 [details] [associations]
            symbol:Sxl "Sex lethal" species:7227 "Drosophila
            melanogaster" [GO:0048024 "regulation of mRNA splicing, via
            spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
            determination" evidence=TAS] [GO:0007549 "dosage compensation"
            evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
            [GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0007541 "sex determination, primary response to
            X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
            [GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
            "reciprocal meiotic recombination" evidence=TAS] [GO:0018993
            "somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
            binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
            evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
            [GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
            differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
            of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
            binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
            activity, nucleic acid binding" evidence=TAS] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
            evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
            [GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
            "oocyte differentiation" evidence=IDA] [GO:0043234 "protein
            complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
            GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
            GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
            GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
            GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
            GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
            EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
            EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
            RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
            RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
            RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
            RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
            RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
            RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
            RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
            RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
            PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
            ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
            STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
            EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
            GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
            FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
            OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
            Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
        Length = 354

 Score = 119 (46.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             LYV NLP ++T   L  +F + G++    I+ D++T R RG  FV     EEA+EAI   
Sbjct:   213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 272

Query:   175 DGSVSADG 182
             +  +   G
Sbjct:   273 NNVIPEGG 280


>UNIPROTKB|F1M5N1 [details] [associations]
            symbol:F1M5N1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
            ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
        Length = 207

 Score = 117 (46.2 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL   F + GT+    ++ D  T RSRGFGFVT  +VEE   A+
Sbjct:    11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 68


>UNIPROTKB|F1M2S4 [details] [associations]
            symbol:F1M2S4 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
            ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
        Length = 208

 Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL   F + GT+    ++ D  T RSRGFGFVT  +VEE   A+
Sbjct:     8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65


>MGI|MGI:1343045 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
            selection" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
            GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
            IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
            UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
            STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
            Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
            UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
            NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
        Length = 388

 Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
             +L++G L       +L  VF + G +    ++ DR T++SRGF FVT  S  +AK+A R 
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   174 FDGSVSADGICIAI 187
              +G  S DG  I +
Sbjct:    69 MNGK-SLDGKAIKV 81


>UNIPROTKB|J3KP15 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
            Uniprot:J3KP15
        Length = 134

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 27/68 (39%), Positives = 35/68 (51%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V NL Y  +  +L  VF + G V    I  DR T  SRGF FV      +A++A+   
Sbjct:    16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query:   175 DGSVSADG 182
             DG+V  DG
Sbjct:    76 DGAV-LDG 82


>UNIPROTKB|J3QL05 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
            Uniprot:J3QL05
        Length = 130

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 27/68 (39%), Positives = 35/68 (51%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L V NL Y  +  +L  VF + G V    I  DR T  SRGF FV      +A++A+   
Sbjct:    16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query:   175 DGSVSADG 182
             DG+V  DG
Sbjct:    76 DGAV-LDG 82


>SGD|S000003391 [details] [associations]
            symbol:NSR1 "Nucleolar protein that binds nuclear
            localization sequences" species:4932 "Saccharomyces cerevisiae"
            [GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006950 "response to stress"
            evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
            GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
            GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
            OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
            EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
            ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
            MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
            EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
            HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
            GermOnline:YGR159C Uniprot:P27476
        Length = 414

 Score = 119 (46.9 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 26/70 (37%), Positives = 40/70 (57%)

Query:   113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
             A ++VG L +S+    L + F   G V  A ++Y+R TDRSRG+G+V   +   A++AI+
Sbjct:   168 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 227

Query:   173 LFDGSVSADG 182
                G    DG
Sbjct:   228 EMQGK-EIDG 236

 Score = 109 (43.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             L++GNL ++    ++ E+FA+ G V S  I     T++ +GFG+V   ++E+AK+A+   
Sbjct:   269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328

Query:   175 DG 176
              G
Sbjct:   329 QG 330


>TAIR|locus:2075860 [details] [associations]
            symbol:U11/U12-31K "U11/U12-31K" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0032502 "developmental process" evidence=IMP] [GO:0051302
            "regulation of cell division" evidence=IMP] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
            GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
            GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
            EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
            ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
            EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
            TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
            ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
        Length = 261

 Score = 118 (46.6 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query:   115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
             LYV NL +S+T+S +  +F+  G VA   ++ DR T +SRG  FV   S E+A +A R  
Sbjct:    59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118

Query:   175 DGSV 178
             D  +
Sbjct:   119 DAKI 122


>UNIPROTKB|F8VZ49 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
            HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
            ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
            Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
            Uniprot:F8VZ49
        Length = 231

 Score = 117 (46.2 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query:   114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
             +L++G L +  T  SL   F + GT+    ++ D  T RSRGFGFVT  +VEE   A+
Sbjct:    34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 91

WARNING:  HSPs involving 352 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       164   0.00088  107 3  11 22  0.47    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  602
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  132 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.15u 0.07s 14.22t   Elapsed:  00:00:02
  Total cpu time:  14.16u 0.07s 14.23t   Elapsed:  00:00:02
  Start:  Fri May 10 19:35:24 2013   End:  Fri May 10 19:35:26 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with CP33 CP33 CP33 AT3G52380	protein from Arabidopsis thaliana	1.1e-21
BLAST match view associations BLAST with CP31B CP31B CP31B AT5G50250	protein from Arabidopsis thaliana	9.8e-16
BLAST match view associations BLAST with RBP31 RBP31 RBP31 AT4G24770	protein from Arabidopsis thaliana	8.9e-15
BLAST match view associations BLAST with AT2G37220 AT2G37220 AT2G37220	protein from Arabidopsis thaliana	1.2e-14
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	5.6e-13
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	7.1e-13
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	9.1e-13
BLAST match view associations BLAST with GSU1324 GSU1324 GSU1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	3.5e-11
BLAST match view associations BLAST with GSU_1324 GSU_1324 GSU_1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	3.5e-11
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	5.8e-11
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	7.4e-11
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	8.1e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	9.4e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	1.7e-10
BLAST match view associations BLAST with PSRP2 PSRP2 PSRP2 AT3G52150	protein from Arabidopsis thaliana	1.8e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.0e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	2.0e-10
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	2.0e-10
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	2.0e-10
BLAST match view associations BLAST with AT1G60000 AT1G60000 AT1G60000	protein from Arabidopsis thaliana	2.0e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	2.5e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	2.5e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	2.5e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.6e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.2e-10
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	8.4e-10
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	1.1e-09
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.4e-09
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.8e-09
BLAST match view associations BLAST with AT2G35410 AT2G35410 AT2G35410	protein from Arabidopsis thaliana	1.8e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	2.2e-09
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	2.2e-09
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	3.6e-09
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	5.9e-09
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	5.9e-09
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3	gene from Caenorhabditis elegans	5.9e-09
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3 Protein R09B3.3	protein from Caenorhabditis elegans	5.9e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	9.7e-09
BLAST match view associations BLAST with CPS_0338 CPS_0338 CPS_0338 RNA-binding protein	protein from Colwellia psychrerythraea 34H	9.7e-09
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	9.7e-09
BLAST match view associations BLAST with CPS_0338 CPS_0338 CPS_0338 RNA-binding protein	protein from Colwellia psychrerythraea 34H	9.7e-09
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	9.7e-09
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	1.2e-08
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-08
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	1.6e-08
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	1.6e-08
BLAST match view associations BLAST with R06C1.4 R06C1.4 R06C1.4	gene from Caenorhabditis elegans	1.6e-08
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	2.0e-08
BLAST match view associations BLAST with SO_0208 SO_0208 SO_0208 RNA-binding protein	protein from Shewanella oneidensis MR-1	2.0e-08
BLAST match view associations BLAST with SO_0208 SO_0208 SO_0208 RNA-binding protein	protein from Shewanella oneidensis MR-1	2.0e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	2.1e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Gallus gallus	2.5e-08
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	2.6e-08
BLAST match view associations BLAST with rbm24-b rbm24-b rbm24-b RNA-binding protein 24-B	protein from Xenopus laevis	3.0e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	3.1e-08
BLAST match view associations BLAST with rbm24-a rbm24-a rbm24-a RNA-binding protein 24-A	protein from Xenopus laevis	3.1e-08
BLAST match view associations BLAST with rbm24 rbm24 rbm24 RNA-binding protein 24	protein from Xenopus (Silurana) tropicalis	3.1e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Canis lupus familiaris	3.2e-08
BLAST match view associations BLAST with ELAVL2 ELAVL2 ELAVL2 ELAV-like protein 2	protein from Homo sapiens	3.3e-08
BLAST match view associations BLAST with DDB_G0279695 DDB_G0279695 DDB_G0279695 RNA recognition motif-containing protein RRM	gene from Dictyostelium discoideum	3.3e-08
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	3.3e-08
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	3.3e-08
BLAST match view associations BLAST with rbm24b rbm24b rbm24b RNA binding motif protein 24b	gene_product from Danio rerio	3.3e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Homo sapiens	3.6e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Sus scrofa	3.7e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Cleavage stimulation factor subunit 2 tau variant	protein from Homo sapiens	3.7e-08
BLAST match view associations BLAST with Cstf2t Cstf2t Cstf2t cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant	gene from Rattus norvegicus	3.8e-08
BLAST match view associations BLAST with CSTF2T CSTF2T CSTF2T Uncharacterized protein	protein from Bos taurus	3.8e-08
BLAST match view associations BLAST with Cstf2t Cstf2t Cstf2t cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein from Mus musculus	3.8e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 Uncharacterized protein	protein from Bos taurus	3.9e-08
BLAST match view associations BLAST with RNPC1 RNPC1 RNPC1 Uncharacterized protein	protein from Sus scrofa	3.9e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Gallus gallus	4.1e-08
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	4.2e-08
BLAST match view associations BLAST with VC_0159 VC_0159 VC_0159 RNA-binding protein	protein from Vibrio cholerae O1 biovar El Tor str. N16961	4.2e-08
BLAST match view associations BLAST with VC_0159 VC_0159 VC_0159 RNA-binding protein	protein from Vibrio cholerae O1 biovar El Tor	4.2e-08
BLAST match view associations BLAST with cstf2 cstf2 cstf2 cleavage stimulation factor, 3' pre-RNA, subunit 2	gene_product from Danio rerio	4.3e-08
BLAST match view associations BLAST with RBM24 RBM24 RBM24 RNA-binding protein 24	protein from Gallus gallus	4.3e-08
BLAST match view associations BLAST with rbm24a rbm24a rbm24a RNA binding motif protein 24a	gene_product from Danio rerio	4.4e-08
BLAST match view associations BLAST with CstF-64 CstF-64 CstF-64 Cleavage stimulation factor 64 kilodalton subunit	protein from Drosophila melanogaster	4.6e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Canis lupus familiaris	4.6e-08
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	5.2e-08
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	5.2e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Bos taurus	5.4e-08
BLAST match view associations BLAST with LOC100515986 LOC100515986 LOC100515986 Uncharacterized protein	protein from Sus scrofa	5.4e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Uncharacterized protein	protein from Canis lupus familiaris	5.5e-08
BLAST match view associations BLAST with CSTF2 CSTF2 CSTF2 Cleavage stimulation factor subunit 2	protein from Homo sapiens	5.5e-08