BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027505
(222 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 121/176 (68%), Gaps = 16/176 (9%)
Query: 9 AASSSLCNKLYNLQAITQIPTNHLPSLFKTK--SPKPLKLE-KAQNPSALHLSLLSLSYF 65
A SSS+CN++YNL + T + F+ + S KP L K+Q + LS L
Sbjct: 3 AVSSSICNRIYNL-SFTHPSLSLTTCNFRQRPISQKPFTLNLKSQ---SFTLSFFPLHRL 58
Query: 66 RQFSASFDGFQVTEDS----QDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLP 121
SA+FDGF+V +D+ QDEPETE E+ E+E + KV+ S +A RLYVGNLP
Sbjct: 59 PPPSAAFDGFEVAQDTTEFQQDEPETEPVEKTEQEEEQ-----KVSDSYDAGRLYVGNLP 113
Query: 122 YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
YS+T+S+LAE+F EAGTVAS EI+YDRVTDRSRGF FVTMG+VE+AKEAIR+FDGS
Sbjct: 114 YSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRMFDGS 169
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + +TS L E FAE V SA+++Y+R + RSRGFGFV+ + E A+
Sbjct: 205 DSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQA 264
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
A+ + +G V G + + L E
Sbjct: 265 ALDIMNG-VEVQGRPLRLNLAE 285
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/184 (50%), Positives = 120/184 (65%), Gaps = 19/184 (10%)
Query: 1 MAASTVSMAASSSLCNKLYNL---QAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHL 57
MAA+ + SSS+CN++YNL + +++ P ++ P L LE + L
Sbjct: 1 MAATA---SVSSSICNRIYNLSFTHPSLSLTSSNFPQRPVSQKPLSLNLES----QSFAL 53
Query: 58 SLLSLSYFRQFSASFDGFQVTEDS----QDEPETEQEEEEEEEAVEEEEEPKVAASDEAA 113
S L L A+FDG +V +D+ QDEPE E E+ E+E + KV+ S++A
Sbjct: 54 SFLPLHRLPPPFAAFDGLEVAQDTTESQQDEPEPETVEKTEQEEEQ-----KVSDSNDAG 108
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLPYS+T+S L E+F EAGTVAS EIVYDRVTDRSRGF FVTMGSVE+AKEAIR+
Sbjct: 109 RLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRM 168
Query: 174 FDGS 177
FDGS
Sbjct: 169 FDGS 172
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + +TS L E FAE V SA+++Y+R + RSRGFGFV+ + E A+
Sbjct: 208 DSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARA 267
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
A+ + +G V G + + L E
Sbjct: 268 ALDIMNG-VEVQGRPLRLNLAE 288
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/183 (50%), Positives = 120/183 (65%), Gaps = 14/183 (7%)
Query: 1 MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLL 60
+AAST++ + + +KL + IP+ L F K KPLKL +QN ++L S
Sbjct: 6 VAASTITSSPLHTKLSKLSFTHSQLLIPSYFLSKPF-LKPLKPLKL-NSQNSNSLPHS-- 61
Query: 61 SLSYFRQFSASFDGFQVTED----SQDEPETEQEEEEEEEAVEEEEEPKVAA--SDEAAR 114
F+A+FD F+V D +QD+P++E +E ++E EEEEE V A + E +
Sbjct: 62 ----HGTFAATFDNFEVETDENIAAQDDPQSETDEFDQEIVEEEEEEEDVVAIKAREEGK 117
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLPYSMTSS LAEVF EAG V AE++ DRVTDRSRGFGFVTM SVEEAKEAIR+F
Sbjct: 118 LYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMF 177
Query: 175 DGS 177
+GS
Sbjct: 178 NGS 180
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 103 EPKVAAS-----DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
EP++ + D ++Y GNL + +TS L + FA + SA+++Y+R T RSRGFG
Sbjct: 204 EPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLGDAFANQPGLLSAKVIYERDTGRSRGFG 263
Query: 158 FVTMGS 163
FV+ S
Sbjct: 264 FVSFDS 269
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 110/165 (66%), Gaps = 12/165 (7%)
Query: 18 LYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGF 75
LYN TQ P N +PS F K + LKL +P+ LS S+S+ +FD
Sbjct: 22 LYNKHFFTQHP-NQIPSHFSPKHNQ-LKLLNLTFHSPNFYPLSFSSVSHLHCAPPAFDEL 79
Query: 76 QVTEDSQDEPETEQ---EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEV 132
++++ PETE +E + EE +EE+E KV+ S EA +LY+GNLPY+MTSS L+EV
Sbjct: 80 EISD-----PETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEV 134
Query: 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
FAEAG V S +++YD+VTDRSRGF FVTM ++EEAKEAIR+FDGS
Sbjct: 135 FAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 179
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 72 FDGFQVTEDSQ--DEPETEQEEEEEEEAVEEEEEPKVAAS-----DEAARLYVGNLPYSM 124
FDG Q+ + + PE + E+E P++ +S D ++Y GNL + +
Sbjct: 176 FDGSQIGGRTVRVNFPEVPRGGEKEVMG------PRIRSSYNKFVDSPHKIYAGNLGWGL 229
Query: 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
TS SL + F + SA+I+YDR + +SRGFGFV+ + E+A+ A+ +G
Sbjct: 230 TSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNG 281
>gi|255566169|ref|XP_002524072.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223536640|gb|EEF38282.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 190
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 113/174 (64%), Gaps = 16/174 (9%)
Query: 14 LCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQN---PSALHLSLLSLSYFRQFSA 70
L KL NL + H LFK PL+L K N P+ L SLLS +F +
Sbjct: 19 LQTKLSNLSLTPSPLSLHTQYLFK-----PLRLLKLNNTHFPNPL--SLLSTHHFIPKFS 71
Query: 71 SFDGFQVTED----SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTS 126
+FD F+V +D ++D+ ++E EE +E E+E P V ++DE RLYVGNLPYSMTS
Sbjct: 72 AFDSFEVDQDDKISARDDLQSEPEELGQEIEEEKEFVP-VESNDEG-RLYVGNLPYSMTS 129
Query: 127 SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSA 180
S L EV EAG+VA+ EI+YDRVTDRSRGFGFVTM SVEEAKEAI++F+ S+ A
Sbjct: 130 SELTEVMQEAGSVANVEIIYDRVTDRSRGFGFVTMASVEEAKEAIKMFNESMIA 183
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 123/183 (67%), Gaps = 12/183 (6%)
Query: 1 MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLE-KAQNPSALHLSL 59
MAAST++ SS L KL NL + T P LPS F +K + N + LSL
Sbjct: 1 MAASTIT---SSPLHTKLSNL-SFTHSPL-PLPSHFSSKPLLKPLKPPQLNNHDSNSLSL 55
Query: 60 LSLSYFRQ-FSASFDGFQV-TEDSQ---DEPETEQEEEEEEEAVEEEEEPKVAASDEAAR 114
LSL +F F+AS D F+ TE++ D+P++E +E ++E VEEE + + + E +
Sbjct: 56 LSLPHFHGIFAASSDSFESGTEENTTALDDPQSETDEFDQE-IVEEEGDVEAIKATEEGK 114
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLPYSMTSS L EVF EAG V SAE++YDRVTDRSRGFGFVTMGSVEEAK+AI++F
Sbjct: 115 LYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKAIQMF 174
Query: 175 DGS 177
+G+
Sbjct: 175 NGT 177
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
D ++Y GNL + +TS L + FA V SA+++Y+R + RSRGFGFV+
Sbjct: 213 DSEHKIYAGNLGWRLTSEGLRDAFANQPGVLSAKVIYERDSRRSRGFGFVSF 264
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 103/165 (62%), Gaps = 30/165 (18%)
Query: 19 YNLQAITQIP-TNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQV 77
Y + ++ IP + H PS+ PKPLKL SA F
Sbjct: 27 YRISKLSLIPISTHFPSI-----PKPLKLTTQ-------------------SAHFPHHLC 62
Query: 78 TEDSQDEPE-----TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEV 132
+P+ E+EEEEEEE EEEE+PKV+ S EA+RLYVGNLPYSMTSS L +V
Sbjct: 63 RTTQHQDPQLQEEEEEEEEEEEEEQQEEEEDPKVSDSAEASRLYVGNLPYSMTSSQLGDV 122
Query: 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
F EAG+V S EIVYDRVTDRSRGF FVTMGSV+EAKEAIR+FDGS
Sbjct: 123 FNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGS 167
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 104 PKVAAS-----DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
PK+ +S D ++Y GNL + +TS L + FA+ + A+++Y+R + RSRGFGF
Sbjct: 192 PKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGF 251
Query: 159 VTMGSVEEAKEAI 171
++ S E A+ A+
Sbjct: 252 LSFASAENAESAL 264
>gi|388522459|gb|AFK49291.1| unknown [Lotus japonicus]
Length = 162
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 106/170 (62%), Gaps = 18/170 (10%)
Query: 1 MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPS----ALH 56
MA++T + SSS+CN++YNL + +L S +P+ +KA N + +
Sbjct: 1 MASTT---SVSSSICNRIYNLSF-----KHSSLALTCNFSQRPIS-QKAFNLNLKFQSFI 51
Query: 57 LSLLSLSYFRQFSASFDGFQVTEDS----QDEPETEQEEEEEEEAVEEEEEPKVAASDEA 112
LS LSL AS D F+V +DS QD PE E E E ++ +EEE+ KV+ S +
Sbjct: 52 LSPLSLHRLHPPPASTDEFEVAQDSTDSRQDNPEPEPETETSDKPQQEEEQ-KVSTSSDD 110
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
RLYVGNLPYSMTSS L E+F EAGTV S E++YDRVTDRSRGF FVTMG
Sbjct: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 66/75 (88%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
+PKV+ S EA+RLYVGNLPYSMTSS L VF EAG+V S EIVYDRVTDRSRGF FVTMG
Sbjct: 236 DPKVSDSAEASRLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMG 295
Query: 163 SVEEAKEAIRLFDGS 177
SV+EAKEAIR+FDGS
Sbjct: 296 SVQEAKEAIRMFDGS 310
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 104 PKVAAS-----DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
PK+ +S D ++Y GNL + +TS L + FA+ + A+++Y+R + RSRGFGF
Sbjct: 335 PKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGF 394
Query: 159 VTMGSVEEAKEAIRLFD 175
++ S E A+ A+ B
Sbjct: 395 LSFASAENAESALNAMB 411
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 61/66 (92%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
RLYVGNLP+SMTSS L+E+FAEAGTVA+ EIVYDRVTDRSRGF FVTMGSVEEAKEAI
Sbjct: 108 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 167
Query: 172 RLFDGS 177
RLFDGS
Sbjct: 168 RLFDGS 173
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +LYV NL +++TS L + FA+ SA+++YDR + RSRGFGF+T S E K
Sbjct: 209 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKS 268
Query: 170 AI 171
A+
Sbjct: 269 AL 270
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 61/66 (92%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
RLYVGNLP+SMTSS L+E+FAEAGTVA+ EIVYDRVTDRSRGF FVTMGSVEEAKEAI
Sbjct: 102 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 161
Query: 172 RLFDGS 177
RLFDGS
Sbjct: 162 RLFDGS 167
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 72 FDGFQVTEDSQ--DEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSL 129
FDG QV + + PE + E E + + + D +LYV NL +++TS L
Sbjct: 164 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQ-GFVDSPHKLYVANLSWALTSQGL 222
Query: 130 AEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ FA+ SA+++YDR + RSRGFGF+T S E K A+
Sbjct: 223 RDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSAL 264
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 61/66 (92%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
RLYVGNLP+SMTSS L+E+FAEAGTVA+ EIVYDRVTDRSRGF FVTMGSVEEAKEAI
Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172
Query: 172 RLFDGS 177
RLFDGS
Sbjct: 173 RLFDGS 178
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 72 FDGFQVTEDSQ--DEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSL 129
FDG QV + + PE + E E + + + D +LYV NL +++TS L
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQ-GFVDSPHKLYVANLSWALTSQGL 233
Query: 130 AEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ FA+ SA+++YDR + RSRGFGF+T S E A+
Sbjct: 234 RDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSAL 275
>gi|356537206|ref|XP_003537120.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 298
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 90/158 (56%), Gaps = 24/158 (15%)
Query: 20 NLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTE 79
N+ P +PS KPL L NP S LSLS + F S FQ
Sbjct: 19 NISLTFNFPHTLIPS-------KPLNL----NPQLFFASPLSLSLY-HFPLSSLSFQ--- 63
Query: 80 DSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTV 139
D+Q + E ++ EP + +++++RL+VGNLPYS+ SS LA+ F EAG V
Sbjct: 64 DTQKPLQRE---------TFQKPEPNASHTNQSSRLFVGNLPYSLLSSQLAQRFGEAGNV 114
Query: 140 ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
S EIVYD + DRSRGF FVTMGS+E+A+ AIR+FDGS
Sbjct: 115 VSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIRMFDGS 152
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + +TS L + FAE SA+++Y+R + RSRG+GFV+ + E+ +
Sbjct: 184 DSPHKIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEA 243
Query: 170 AIRLFDG 176
A+ +G
Sbjct: 244 ALNSMNG 250
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS E RLYVGNLPY++TSS L+++F EAGTV +IVYD+VTDRSRGFGFVTMGS+EEA
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 168 KEAIRLFDGS 177
KEA+++F+ S
Sbjct: 171 KEAMQMFNSS 180
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL +++TS L + F + V A+++Y+R T RSRGFGF++ S E +
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 170 AIRLFDGSVSADGICIAIVL 189
A+ +G V +G + + L
Sbjct: 276 ALATMNG-VEVEGRALRLNL 294
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS E RLYVGNLPY++TSS L+++F EAGTV +IVYD+VTDRSRGFGFVTMGS+EEA
Sbjct: 103 ASGEEWRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 162
Query: 168 KEAIRLFDGS 177
KEA+++F+ S
Sbjct: 163 KEAMQMFNSS 172
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL +++TS L + F + V A+++Y+R T RSRGFGF++ S E +
Sbjct: 208 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 267
Query: 170 AIRLFDGSVSADGICIAIVL 189
A+ +G V +G + + L
Sbjct: 268 ALATMNG-VEVEGRALRLNL 286
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 63/77 (81%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
+E+ AS E RLYVGNLPY++TSS L+++F EAG V +IVYD+VTDRSRGFGFVT
Sbjct: 105 DEKQTTQASGEEGRLYVGNLPYTITSSELSQLFGEAGNVVDVQIVYDKVTDRSRGFGFVT 164
Query: 161 MGSVEEAKEAIRLFDGS 177
MG++EEAKEAI++F+ S
Sbjct: 165 MGTIEEAKEAIQMFNSS 181
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL +++TS L + F + V A+++Y+R T RSRGFGF++ S E+ +
Sbjct: 217 DSPHKIYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQS 276
Query: 170 AIRLFDGSVSADGICIAIVL 189
A+ +G V +G + + L
Sbjct: 277 ALATMNG-VEVEGRALRLNL 295
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 60/70 (85%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS E RLYVGNLPY++TSS L+++F EAGTV +IVYD+VTDRSRGFGFVTMGS+EEA
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 168 KEAIRLFDGS 177
K A+++F+ S
Sbjct: 171 KGAMQMFNSS 180
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + +TS L + F + V A+++Y+R T RSRGFGF++ S E +
Sbjct: 216 DSPHKVYAGNLGWDLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 170 AIRLFDGSVSADGICIAIVL 189
A+ +G V +G + + L
Sbjct: 276 ALATMNG-VEVEGRALRLNL 294
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S ++ RL+VGNLP+S++SS LA++F EAG V S EI+YD +T+RSRGF FVTMG+VE+
Sbjct: 102 AESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVED 161
Query: 167 AKEAIRLFDGSVSADGICIAI 187
A+EAIR+FDG+ + G I +
Sbjct: 162 AEEAIRMFDGT-TVGGRAIKV 181
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + MTS L + FA+ + SA++VY+R +SRG+GFV+ + E+ +
Sbjct: 204 DSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEV 263
Query: 170 AIRLFDG 176
A+ +G
Sbjct: 264 ALSAMNG 270
>gi|414883567|tpg|DAA59581.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 385
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 68/96 (70%), Gaps = 8/96 (8%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D+ RL+VGNLPY+ TS LA+VF+EAG V A+I+YD+VT+RSRGF FVTM + EEA
Sbjct: 108 GDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAA 167
Query: 169 EAIRLFDGSVS---ADGICIAI-----VLIEPFNCQ 196
+AI++FDG+VS A+ I + +L+ P N Q
Sbjct: 168 KAIQMFDGAVSTAPANWISTSTPHRIGILLLPMNVQ 203
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L VF + A ++++R T RSRGFGFV+ + E+A+
Sbjct: 252 DGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQA 311
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
A+ DG V +G + + L E
Sbjct: 312 ALESLDG-VELEGRSLRLSLAE 332
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 57/70 (81%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D+ RL+VGNLPY+ TS LA+VFAEAG V A+I+YD+VT+RSRGF FVTM + EEA
Sbjct: 106 GDDPGRLFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAA 165
Query: 169 EAIRLFDGSV 178
+AI++FDG++
Sbjct: 166 KAIQMFDGAL 175
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L VF + A ++++R T RSRGFGFV+ + E+A+
Sbjct: 206 DGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQA 265
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
A+ DG V +G + + L E
Sbjct: 266 ALEALDG-VELEGRPLRLSLAE 286
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 57/70 (81%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D+ RL+VGNLPY+ TS LA+VF+EAG V A+I+YD+VT+RSRGF FVTM + EEA
Sbjct: 108 GDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAA 167
Query: 169 EAIRLFDGSV 178
+AI++FDG++
Sbjct: 168 KAIQMFDGAL 177
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L VF + A ++++R T RSRGFGFV+ + E+A+
Sbjct: 208 DGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQA 267
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
A+ DG V +G + + L E
Sbjct: 268 ALESLDG-VELEGRPLRLSLAE 288
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 57/70 (81%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D+ RL+VGNLPY+ TS LA+VF+EAG V A+I+YD+VT+RSRGF FVTM + EEA
Sbjct: 108 GDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAA 167
Query: 169 EAIRLFDGSV 178
+AI++FDG++
Sbjct: 168 KAIQMFDGAL 177
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L VF + A ++++R T RSRGFGFV+ + E+A+
Sbjct: 208 DGTYKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQA 267
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
A+ DG V +G + + L E
Sbjct: 268 ALESLDG-VELEGRSLRLSLAE 288
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 29 TNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSY---FRQFSASFDGFQVTEDSQDEP 85
T PSLF T KPL L+ + S++ LSL + ++ F A + E+ Q
Sbjct: 23 TKTKPSLF-TPPSKPLTLQFSCLNSSVSLSLAAPTHRSPLVTFVAQTSDWAQQEEEQSLA 81
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
ETE E E E+ + E A+L+VGNLPY + S LA +F +AGTV AE++
Sbjct: 82 ETEAGLESWEPNGEDAGDESFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVI 141
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
Y+R TD+SRGFGFVTM +VEEA+ A+ F+
Sbjct: 142 YNRETDQSRGFGFVTMSTVEEAESAVEKFN 171
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+ + ++ L ++F++ G V +A +VYDR + RSRGFGFVTM E +A+
Sbjct: 207 IYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAAL 266
Query: 175 DGSVSADGICIAIVLIE 191
DG S DG I + + E
Sbjct: 267 DGE-SLDGRAIKVSVAE 282
>gi|296089370|emb|CBI39142.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 48/54 (88%)
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
MTSS L +VF EAG+V S EIVYDRVTDRSRGF FVTMGSV+EAKEAIR+FDGS
Sbjct: 1 MTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGS 54
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 104 PKVAAS-----DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
PK+ +S D ++Y GNL + +TS L + FA+ + A+++Y+R + RSRGFGF
Sbjct: 79 PKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGF 138
Query: 159 VTMGSVEEAKEAI 171
++ S E A+ A+
Sbjct: 139 LSFASAENAESAL 151
>gi|388506424|gb|AFK41278.1| unknown [Lotus japonicus]
Length = 199
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 48/54 (88%)
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
MTSS L E+F EAGTV S E++YDRVTDRSRGF FVTMGSV++AKEAIR+FDGS
Sbjct: 1 MTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGS 54
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + ++Y GNL + ++S L +VFAE + SA+++Y+R + RSRGFGFVT + ++ +
Sbjct: 90 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 149
Query: 170 AIRLFDG 176
A++ +G
Sbjct: 150 ALKTMNG 156
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 57/74 (77%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ A E R+YVGNLPY+ T++ L VF+EAG+V +I+YD++TDRSRGF FVTM +
Sbjct: 113 RPALGQEPGRIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 172
Query: 165 EEAKEAIRLFDGSV 178
EEA +A+++F+G++
Sbjct: 173 EEAAKAVQMFNGAL 186
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L F + + ++++R T RSRGFGFV+ ++E+A
Sbjct: 222 DGTYKVYAGNLGWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANA 281
Query: 170 AIRLFDGSVSADGICIAIVL 189
AI+ DG V DG + + L
Sbjct: 282 AIQAMDG-VELDGRPLRLSL 300
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 10/152 (6%)
Query: 32 LPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEE 91
LPS+ S KP + P ++L L S + S+ F + D PE E+ E
Sbjct: 26 LPSISTISSSKPHHSNFSLPPRPINLPLSLKSKTLRNSSPIVTF--VSQTSDWPEEEEGE 83
Query: 92 EEE--------EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +E+ + E+ K E A+L+VGNLPY + S +LA +F +AGTV +E
Sbjct: 84 DGSIGGTSVTVDESFDTEDGGKFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISE 143
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
++Y+R TD+SRGFGFVTM +VEEAK+A+ F+
Sbjct: 144 VIYNRDTDQSRGFGFVTMSTVEEAKKAVEKFN 175
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E +P+ D A R+YVGNLP+ + + L +VF+E G V A +VYDR T RSRGFGFVT
Sbjct: 197 ERQPR--QYDAAFRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVT 254
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M + E +AI DG + +G I + + E
Sbjct: 255 MSNENEVNDAIAALDGQ-NLEGRAIKVNVAE 284
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
EEE E + E A+L+VGNLPY + S LA++F AG V AE++Y+R TDRSRGFGF
Sbjct: 114 EEESEQGFSEPPEEAKLFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETDRSRGFGF 173
Query: 159 VTMGSVEEAKEAIRLFDG 176
VTM +VEEA++A+ + +G
Sbjct: 174 VTMSTVEEAEKAVEMLNG 191
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ R+YVGNLP+ + ++ L +VF+E G V SA +V DR T RSRGFGFV+M S E +AI
Sbjct: 221 SCRVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAI 280
Query: 172 RLFDGSVSADGICIAIVLIE 191
DG + DG I + + E
Sbjct: 281 AALDGQ-TLDGRAIRVNVAE 299
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 56/74 (75%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ A E R+YVGNLPY+ T++ L F+EAG+V +I+YD++TDRSRGF FVTM +
Sbjct: 100 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 159
Query: 165 EEAKEAIRLFDGSV 178
EEA +A+++F+G++
Sbjct: 160 EEAAKAVQMFNGAL 173
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L F + A ++++R T RSRGFGFV+ ++++AK
Sbjct: 209 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 268
Query: 170 AIRLFDGSVSADGICIAIVL 189
A++ DG V DG + + L
Sbjct: 269 ALQAMDG-VELDGRPLRLSL 287
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 56/74 (75%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ A E R+YVGNLPY+ T++ L F+EAG+V +I+YD++TDRSRGF FVTM +
Sbjct: 100 RPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATA 159
Query: 165 EEAKEAIRLFDGSV 178
EEA +A+++F+G++
Sbjct: 160 EEAAKAVQMFNGAL 173
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L F + A ++++R T RSRGFGFV+ ++++AK
Sbjct: 209 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 268
Query: 170 AIRLFDGSVSADGICIAIVL 189
A++ DG V DG + + L
Sbjct: 269 ALQAMDG-VELDGRPLRLSL 287
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 66/95 (69%), Gaps = 5/95 (5%)
Query: 86 ETEQEEEEEEEA-----VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+TE E+ EE+ VE EE E A+L+VGNLPY + +LAE+F +AGTV
Sbjct: 89 QTESGAEDGEESGGDGFVEGGEEDSYPLPPEEAKLFVGNLPYDVDHQALAELFDQAGTVE 148
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
AE++Y+R TD+SRGFGFVTM +VEEA++A+ +F+
Sbjct: 149 VAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEMFN 183
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + A R+YVGNLP+ + + L +VF+E G V A +VYDR T RSRGFGFVTM + E
Sbjct: 210 AFEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTEL 269
Query: 168 KEAIRLFDGSVSADGICIAIVLIE 191
+AI DG S DG I + + E
Sbjct: 270 DDAIAALDGQ-SLDGRAIRVNVAE 292
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 99/189 (52%), Gaps = 25/189 (13%)
Query: 32 LPSLFKTKSP---------KPLKLEKAQN------PSA-LHLSLLSLSYFRQFSASFDGF 75
LP++F TK+P KP+KL + + PS L LS S + + D
Sbjct: 22 LPTIFSTKTPHSYLPIPPHKPIKLLLSCSQSSLFSPSLFLKSKTLSSSVVTFVAQTSDWA 81
Query: 76 QVTEDSQDEPETEQEEE---EEEEAVEEEEEPKVAASD-----EAARLYVGNLPYSMTSS 127
Q ED+ E EQEE+ E EEA+ ++ E A+++VGNLPY + S
Sbjct: 82 QQEEDNTVIIEEEQEEKVTWENEEAISDDGVVDDGEDSYSEPPEEAKVFVGNLPYDVDSE 141
Query: 128 SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
LA +F +AG V AE++Y+R TDRSRGFGFV+M +VEEA++A+ +F DG + +
Sbjct: 142 RLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFH-RYELDGRLLTV 200
Query: 188 VLIEPFNCQ 196
P Q
Sbjct: 201 NKAAPRGSQ 209
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + S+ L +VF+E G V A +V+DR T RSRGFGFVT
Sbjct: 211 ERPPRVF--EPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVT 268
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M S E ++AI DG + DG I + + E
Sbjct: 269 MSSQTELEDAIAATDGQ-TLDGRTIRVNVAE 298
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 88/154 (57%), Gaps = 13/154 (8%)
Query: 33 PSLFKTKSPKPLKLEKAQNPSALHLSLLSLSY----FRQFSASFDGFQVTEDS----QDE 84
PSLF S KPL L+ + S++ LSL + ++ + + + D Q ED QDE
Sbjct: 33 PSLFSPPS-KPLTLQFSCINSSVSLSLAARAHRSPLVTRVAQTSDWAQQEEDDTATFQDE 91
Query: 85 ----PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
ET+ E E+ E A E A+L+VGNLPY + S LA +F +AGTV
Sbjct: 92 EQGLSETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVE 151
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
AE++Y+R TD+SRGFGFVTM +VEEA+ A+ F
Sbjct: 152 IAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKF 185
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+ + ++ L ++F+E G V +A +VYDR T RSRGFGFVTM E K+A+
Sbjct: 222 IYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAAL 281
Query: 175 DGSVSADGICIAIVLIE 191
DG S DG I + + E
Sbjct: 282 DGQ-SLDGRPIRVSVAE 297
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 63/91 (69%), Gaps = 3/91 (3%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
E E E + E+E+VE ++ P + E +LYVGNLP+ + S LA++F E+G V E++
Sbjct: 143 EEEPESKPEQESVEGQDYPPLP---EGTKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVI 199
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
YDR + RSRGF FVTM +VEEA+ AI+ F+G
Sbjct: 200 YDRSSGRSRGFAFVTMSTVEEAEAAIKKFNG 230
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL +S+TS +L E G V A+++ DR T RSRGFGFV+ S E +
Sbjct: 266 DSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEA 325
Query: 170 AIRLFDG 176
A+ DG
Sbjct: 326 AVSEMDG 332
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 7/117 (5%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
E E E + E+E+VE ++ P + E +LYVGNLP+ + S LA++F E+G V E++
Sbjct: 135 EEEPESKPEQESVEGQDYPPLP---EGTKLYVGNLPFDIDSEGLAKMFDESGVVEMVEVI 191
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHFGNGR 202
YDR + RSRGF FVTM +VEEA+ AI+ F+G DG + + E Q NGR
Sbjct: 192 YDRSSGRSRGFAFVTMSTVEEAEAAIKKFNG-FEIDGRSLRVNFPEVPRLQ---NGR 244
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL +S+TS +L E G V A+++ DR T RSRGFGFV+ S E +
Sbjct: 258 DSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEA 317
Query: 170 AIRLFDG 176
A+ DG
Sbjct: 318 AVSEMDG 324
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 60/87 (68%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E + E AVE+EE + E A++YVGNLPY + S LA++F +AG V AE++Y+
Sbjct: 91 EDDAVEASAAVEDEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYN 150
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLF 174
R TDRSRGFGFVTM +VEEA +A+ +
Sbjct: 151 RETDRSRGFGFVTMSTVEEADKAVEML 177
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L ++F+E G V A +VYDR T RSRGFGFVTM + +E +AI
Sbjct: 211 RIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDAIAA 270
Query: 174 FDGSVSADGICIAIVLIE 191
DG S DG + + + E
Sbjct: 271 LDGQ-SLDGRALRVNVAE 287
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 63/87 (72%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148
++EEE E +EE +A E +++VGNLP+ + S+ LA++F +AG V SAE++Y+R
Sbjct: 112 EDEEESGEVGFADEEDSYSAPPEEVKIFVGNLPFDLESADLADLFNKAGVVESAEVIYNR 171
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFD 175
TD+SRGFGFV+M +VEE +AI +FD
Sbjct: 172 ETDQSRGFGFVSMSTVEEVVKAIEMFD 198
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGN+P+ + + L ++F+E G V A IV+DR T RSRGFGFVTM S E ++AI
Sbjct: 229 AFRVYVGNIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSSQIEMEDAI 288
Query: 172 RLFDGSVSADGICIAIVL 189
DGS DG I + +
Sbjct: 289 AALDGS-DLDGRAIKVSM 305
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 5/77 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
EE +EP E A+L+VGNLPY + S LA++F +AG V AE++Y+R TDRSRGFG
Sbjct: 87 TEEYQEPS-----EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFG 141
Query: 158 FVTMGSVEEAKEAIRLF 174
FVTM +VEEA +A+ L+
Sbjct: 142 FVTMSTVEEADKAVELY 158
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGN+P+ + + L +VF+E G V SA +V+DR + RSRGFGFVTM S E EAI
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 174 FDGSVSADGICIAI 187
DG + DG I +
Sbjct: 252 LDGQ-TLDGRTIRV 264
>gi|255636284|gb|ACU18482.1| unknown [Glycine max]
Length = 280
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 52/66 (78%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+ + S +LA +F +AGTV AE++Y+R TDRSRGFGFVTM ++EE K+A
Sbjct: 115 EEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKA 174
Query: 171 IRLFDG 176
+ +F G
Sbjct: 175 VEMFSG 180
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM S + +AI
Sbjct: 215 RVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 274
Query: 174 FDGSVS 179
D V+
Sbjct: 275 LDVRVT 280
>gi|118487510|gb|ABK95582.1| unknown [Populus trichocarpa]
Length = 198
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 47/54 (87%)
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
MTSS LAEVF EAG V AE++ DRVTDRSRGFGFVTM SVEEAKEAIR+F+GS
Sbjct: 1 MTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGS 54
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 103 EPKVAAS-----DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
EP++ + D ++Y GNL + +TS L + FA + SA+++Y+R T RSRGFG
Sbjct: 78 EPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLGDAFANQPGLLSAKVIYERDTGRSRGFG 137
Query: 158 FVTMGS 163
FV+ S
Sbjct: 138 FVSFDS 143
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 14/148 (9%)
Query: 32 LPSLFKTKSPKPLKLEKAQN-PSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQE 90
+ S F + + KP+K+ + + PS + L + S F +Q +Q+
Sbjct: 21 IKSPFISITSKPIKVVFSTSFPSWVSLKTSNFSTFNTIPLV---------AQTSDWAQQD 71
Query: 91 EEEE----EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
EE+ EE+ + E E A+LYVGNLPY + S +LA++F +AGTV AEI+Y
Sbjct: 72 EEDTVTLGEESFGDGSEETFPEPPEEAKLYVGNLPYDVNSENLAQLFDQAGTVEVAEIIY 131
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+R TD+SRGFGFVTM +V+EA++AI F
Sbjct: 132 NRETDQSRGFGFVTMSTVDEAEKAIEKF 159
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + + L +VF+E G V +A +V DR T RSRGFGFVTM S E +AI
Sbjct: 190 AYRIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSSETELNDAI 249
Query: 172 RLFDGSVSADGICIAI 187
DG S DG I +
Sbjct: 250 AALDGQ-SLDGRAITV 264
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 52/66 (78%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+ + S +LA +F +AGTV AE++Y+R TDRSRGFGFVTM ++EE K+A
Sbjct: 115 EEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKA 174
Query: 171 IRLFDG 176
+ +F G
Sbjct: 175 VEMFSG 180
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM S + +AI
Sbjct: 215 RVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 274
Query: 174 FDGSVSADGICIAI 187
DG S DG I +
Sbjct: 275 LDGQ-SLDGRAIRV 287
>gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
Length = 292
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 89/183 (48%), Gaps = 29/183 (15%)
Query: 10 ASSSLCNKLYNLQAI---TQIPTNHLPSLFKTKSPKPLKLEK-AQNPSALH--------L 57
A+S+ N AI TQ PT+ P PK L LEK N S H +
Sbjct: 2 ATSTATNHFLKTLAISITTQKPTSIFP-------PKSLVLEKPTTNNSQFHYKTHHLCCM 54
Query: 58 SLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASD------E 111
L S F Q S+ D ++ E + E+A E + + D E
Sbjct: 55 CCLQTSDFEQESSP----NAVIDEEENVEKTEAAVNWEDASEPQPSSGFGSEDGFSEPSE 110
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVGNLP+ + S LA +F AG V AE++Y+R TDRSRGFGFVTM +VEEA +A+
Sbjct: 111 DVKLYVGNLPFDVDSEKLANMFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 170
Query: 172 RLF 174
+F
Sbjct: 171 EMF 173
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 116 YVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA-IRLF 174
YVGNLP+ + + L ++ +E G V SA +V DR T+RSRGFGFVTM S E +A +
Sbjct: 210 YVGNLPWDVDNDRLEQLSSEHGKVLSARVVSDRETERSRGFGFVTMASETEMNDATLGAL 269
Query: 175 DGSVSADGICIAIVLIE 191
DG S +G I + + E
Sbjct: 270 DGE-SLEGRPIRVNVAE 285
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 56/74 (75%), Gaps = 5/74 (6%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
EEP +E A+L+VGNLPY + S LA +F +AGTV AE++Y+R TDRSRGFGFVTM
Sbjct: 146 EEP-----NEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTM 200
Query: 162 GSVEEAKEAIRLFD 175
+VEEA++A+ F+
Sbjct: 201 STVEEAEKAVDTFN 214
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L ++F+E G V A ++YDR + RSRGFGFVTM +AI
Sbjct: 247 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAA 306
Query: 174 FDGSVSADGICIAIVLIE 191
DG S DG I + + E
Sbjct: 307 LDGQ-SLDGRAIRVNVAE 323
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 56/74 (75%), Gaps = 5/74 (6%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
EEP +E A+L+VGNLPY + S LA +F +AGTV AE++Y+R TDRSRGFGFVTM
Sbjct: 140 EEP-----NEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTM 194
Query: 162 GSVEEAKEAIRLFD 175
+VEEA++A+ F+
Sbjct: 195 STVEEAEKAVDTFN 208
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L ++F+E G V A ++YDR + RSRGFGFVTM +AI
Sbjct: 241 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAA 300
Query: 174 FDGSVSADGICIAIVLIEPFNCQHF 198
DG S DG I + + E ++F
Sbjct: 301 LDGQ-SLDGRAIRVNVAEERPRRNF 324
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 53/65 (81%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLPY + S LA++F EAG V AE++Y+R TD+SRGFGF+TM +VEEA++A
Sbjct: 91 EEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKA 150
Query: 171 IRLFD 175
+ +F+
Sbjct: 151 VEMFN 155
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L +VF+E G V A +VYDR T RSRGFGFVTM S E +AI
Sbjct: 188 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 247
Query: 174 FDGSVSADGICIAIVLIE 191
DG S DG I + + E
Sbjct: 248 LDGQ-SLDGRAIRVNVAE 264
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 53/65 (81%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLPY + S LA++F EAG V AE++Y+R TD+SRGFGF+TM +VEEA++A
Sbjct: 131 EEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKA 190
Query: 171 IRLFD 175
+ +F+
Sbjct: 191 VEMFN 195
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L +VF+E G V A +VYDR T RSRGFGFVTM S E +AI
Sbjct: 228 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 287
Query: 174 FDGSVSADGICIAIVLIE 191
DG S DG I + + E
Sbjct: 288 LDGQ-SLDGRAIRVNVAE 304
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 100/211 (47%), Gaps = 48/211 (22%)
Query: 32 LPSLFKTKSP---------KPLKLEKAQN------PSA-LHLSLLSLSYFRQFSASFDGF 75
LP++F TK+P KP+KL + + PS L LS S + + D
Sbjct: 22 LPTIFSTKTPHSYLPIPPHKPIKLLLSCSQSSLFSPSLFLKSKTLSSSVVTFVAQTSDWA 81
Query: 76 QVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASD------------------------- 110
Q ED+ E EQEE+ E EE E P ASD
Sbjct: 82 QQEEDNTVIIEEEQEEKVTWEN-EEVEGPDAQASDWESEGEGAVTEAISDDGVVDDGEDS 140
Query: 111 -----EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
E A+++VGNLPY + S LA +F +AG V AE++Y+R TDRSRGFGFV+M +VE
Sbjct: 141 YSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVE 200
Query: 166 EAKEAIRLFDGSVSADGICIAIVLIEPFNCQ 196
EA++A+ +F DG + + P Q
Sbjct: 201 EAEKAVDMFH-RYELDGRLLTVNKAAPRGSQ 230
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + S+ L +VF+E G V A +V+DR T RSRGFGFVT
Sbjct: 232 ERPPRVF--EPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVT 289
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M S E ++AI DG + DG I + + E
Sbjct: 290 MSSQTELEDAIAATDGQ-TLDGRTIRVNVAE 319
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V +E++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 141 EEAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKA 200
Query: 171 IRLFDGSVSADGICIAI 187
+ +F DG + +
Sbjct: 201 VEMFH-RYDVDGRLLTV 216
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L ++F+E G V A +VYDR T RSRGFGFVTM + EE +AI
Sbjct: 238 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 297
Query: 174 FDGSVSADGICIAIVLIE 191
DG S DG + + + E
Sbjct: 298 LDGQ-SLDGRALRVNVAE 314
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 91/170 (53%), Gaps = 26/170 (15%)
Query: 32 LPSLFKTKSP--------KPLKLEKAQNPSALHLSL-----LSLS---------YFRQFS 69
PS+F +K P +P+KL+ + + S LS+ LSL+ + +Q
Sbjct: 9 FPSIFTSKPPLKPLPISHRPIKLQLSYSHSLSTLSVKPKTHLSLTIPFVAQTSDWAQQEE 68
Query: 70 ASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAAS----DEAARLYVGNLPYSMT 125
+ +TE S E E E E EAV E E E A++YVGNLPY +T
Sbjct: 69 ENNTTITLTEVSDWEAEGEDAAASETEAVRGEGERGDEEGFVEPPEEAKIYVGNLPYDVT 128
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
S LA +F +AGTV +E++Y+ TD SRGFGFVTM +VEE+ +AI +F+
Sbjct: 129 SEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTVEESDKAIEMFN 178
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V S+ + R+YVGNLP+ + S L EVF+E G V SA++V D T RSRGFGFVT
Sbjct: 200 ERPPRV--SEPSYRIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVT 257
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAI 187
M S E +AI DG DG I +
Sbjct: 258 MSSESELNDAIAALDGQ-ELDGRAIRV 283
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 52/64 (81%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V +E++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 5 EEAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKA 64
Query: 171 IRLF 174
+ +F
Sbjct: 65 VEMF 68
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L ++F+E G V A +VYDR T RSRGFGFVTM + EE +AI
Sbjct: 102 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 161
Query: 174 FDGSVSADGICIAIVLIE 191
DG S DG + + + E
Sbjct: 162 LDGQ-SLDGRALRVNVAE 178
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 51/66 (77%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLPY + S LA +F AG V AE++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 112
Query: 171 IRLFDG 176
+ L +G
Sbjct: 113 VELLNG 118
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + +S L ++F+E G V SA +V DR T RSRGFGFVTM S E +AI
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209
Query: 174 FDGSVSADGICIAIVLIE 191
DG + DG + + + E
Sbjct: 210 LDGQ-TLDGRAVRVNVAE 226
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 51/66 (77%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLPY + S LA +F AG V AE++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 46 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 105
Query: 171 IRLFDG 176
+ L +G
Sbjct: 106 VELLNG 111
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + +S L ++F+E G V SA +V DR T RSRGFGFVTM S E +AI
Sbjct: 143 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 202
Query: 174 FDGSVSADGICIAIVLIE 191
DG + DG + + + E
Sbjct: 203 LDGQ-TLDGRAVRVNVAE 219
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 79 EDSQDEP-ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAE 135
E+ EP E E E EE A E E + AA + E A++YVGNLPY + S LA++F +
Sbjct: 71 EEKAGEPVEMEAGEFEEVLASGGEGEGQYAAVEPPEEAKVYVGNLPYDVDSEGLAQIFDQ 130
Query: 136 AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
AG V AE++Y+R T +SRGFGFVTM +VEEA +AI +F
Sbjct: 131 AGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEMF 169
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 47/68 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V A++VYDR T RSRGFGFV+M S EE +AI
Sbjct: 201 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAI 260
Query: 172 RLFDGSVS 179
DG V+
Sbjct: 261 SALDGQVN 268
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 96/180 (53%), Gaps = 21/180 (11%)
Query: 11 SSSLCNKLYNLQAITQIPTNHL---PSLFKTKSPKP--LKLEKAQNPSALHLSLLSLSYF 65
+SS+ L A+T ++ L PS+F S + + P L LSL S +
Sbjct: 2 TSSVLTPSLKLLAMTNSSSSTLFCIPSIFNISSSESHRFNFSLSSRPVNLTLSLKSKT-L 60
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEE----------EEAVEEEEEPKVAASDEAARL 115
R S VT SQ E+EE E+ +E+ E E+ E A+L
Sbjct: 61 RNSSPV-----VTFVSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKL 115
Query: 116 YVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
+VGNLPY + S +LA +F +AGTV +E++Y+R TD+SRGFGFVTM +VEEA++A+ F+
Sbjct: 116 FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFN 175
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E +P+V D A R+YVGNLP+ + S L +F+E G V A +V DR T RSRGFGFV
Sbjct: 197 ERQPRVY--DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQ 254
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M + E AI DG + +G I + + E
Sbjct: 255 MSNENEVNVAIAALDGQ-NLEGRAIKVNVAE 284
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 69/127 (54%), Gaps = 34/127 (26%)
Query: 82 QDEPETEQEEEEEEEAV----EEEEEPKVAASD--------------------------- 110
Q+E T EEE+EE V EE E P ASD
Sbjct: 878 QEEDNTVIIEEEQEEKVTWENEEVEGPDAQASDWESEGEGAVTEAISDDGVVDDGEDSYS 937
Query: 111 ---EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
E A+++VGNLPY + S LA +F +AG V AE++Y+R TDRSRGFGFV+M +VEEA
Sbjct: 938 EPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEA 997
Query: 168 KEAIRLF 174
++A+ +F
Sbjct: 998 EKAVDMF 1004
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+ E P+V + A R+YVGNLP+ + S+ L +VF+E G V A +V+DR T RSRGFGF
Sbjct: 1025 QPERPPRVF--EPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGF 1082
Query: 159 VTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
VTM S E ++AI DG + DG I + + E
Sbjct: 1083 VTMSSQTELEDAIAATDGQ-TLDGRTIRVNVAE 1114
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 50/63 (79%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNLP+ S LA +F +AGTV AE++Y+R TDRSRGFGFVTM ++EE ++A+++
Sbjct: 125 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 184
Query: 174 FDG 176
F G
Sbjct: 185 FSG 187
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + +S L ++F+E G V A +VYDR T RSRGFGFVTM S + +AI
Sbjct: 218 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 277
Query: 174 FDGSVSADGICIAI 187
DG S DG I +
Sbjct: 278 LDGQ-SLDGRAIRV 290
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 50/63 (79%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNLP+ S LA +F +AGTV AE++Y+R TDRSRGFGFVTM ++EE ++A+++
Sbjct: 123 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 182
Query: 174 FDG 176
F G
Sbjct: 183 FSG 185
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + +S L ++F+E G V A +VYDR T RSRGFGFVTM S + +AI
Sbjct: 216 RVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 275
Query: 174 FDGSVSADGICIAI 187
DG S DG I +
Sbjct: 276 LDGQ-SLDGRAIRV 288
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 52/64 (81%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y+R TD+SRGFGFVTM +VEEA++A
Sbjct: 123 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKA 182
Query: 171 IRLF 174
+ +F
Sbjct: 183 VEMF 186
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L E+F+E G V A +VYDR T RSRGFGFVTM S +E +AI
Sbjct: 220 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMASQDELDDAIAA 279
Query: 174 FDGSVSADGICIAIVLIE 191
DG S DG + + + E
Sbjct: 280 LDGQ-SLDGRALRVNVAE 296
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 79 EDSQDEP-ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAE 135
E+ EP E E E EE A E E + AA + E A++YVGNLPY + S LA++F +
Sbjct: 71 EEKAGEPVEMEAGEFEEVLASGGEGEGQYAAVEPPEEAKVYVGNLPYDVDSEGLAQIFDQ 130
Query: 136 AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
AG V AE++Y+R T +SRGFGFVTM +VEEA +AI +F
Sbjct: 131 AGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEMF 169
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 45/65 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V A++VYDR T RSRGFGFV+M S EE +AI
Sbjct: 201 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAI 260
Query: 172 RLFDG 176
DG
Sbjct: 261 SALDG 265
>gi|301087136|gb|ADK60785.1| chloroplast ribonucleoprotein [Arachis diogoi]
Length = 146
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 51/63 (80%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNLP+S+ S+ LAE+F AGTV E++YD+++ RSRGFGFVTM S+EEA+ A +
Sbjct: 69 KLFVGNLPFSVDSAQLAELFESAGTVEVVEVIYDKMSGRSRGFGFVTMSSIEEAEAAKQQ 128
Query: 174 FDG 176
FDG
Sbjct: 129 FDG 131
>gi|115470657|ref|NP_001058927.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|34394882|dbj|BAC84331.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113610463|dbj|BAF20841.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|125557292|gb|EAZ02828.1| hypothetical protein OsI_24955 [Oryza sativa Indica Group]
gi|215695203|dbj|BAG90394.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740788|dbj|BAG96944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 348
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 57/74 (77%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ A E RL+VGNLPY+MTS +++ F+EAG V + +I+YD+VTDRSRGF FVTM +
Sbjct: 110 RPALGQEPGRLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATA 169
Query: 165 EEAKEAIRLFDGSV 178
EEA AI++F+G++
Sbjct: 170 EEAATAIQMFNGAL 183
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++Y GNL + + + +L F + A ++++R + RSRGFGFV+ + E+A+
Sbjct: 217 DGTFKIYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQA 276
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
A+ DG V +G + + + E
Sbjct: 277 ALEALDG-VELEGRPLRLSMAE 297
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 51/64 (79%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLP+ + S LA++F AG V AE++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 109 EDAKLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 168
Query: 171 IRLF 174
+ L+
Sbjct: 169 VELY 172
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + + L +VF+E G V SA +V DR T RSRGF FVTM S E EAI
Sbjct: 206 RVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGA 265
Query: 174 FDGSVSADGICIAIVLIE 191
DG + +G I + + E
Sbjct: 266 LDGQ-TLEGRAIRVNVAE 282
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 14/178 (7%)
Query: 1 MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLL 60
M+ +++MA + + + L +PT LP L + PL L + L L+ L
Sbjct: 4 MSLRSLAMAMADTALPPAHKL-----LPTVSLPLLSSSTRAAPLLLFARRR---LPLAPL 55
Query: 61 SLSYFRQFSASFDGFQVTEDSQDEP-ETEQEEEEEEEAVEEEEEPKVAASD--EAARLYV 117
S + S D E+ EP + E E EE A E E + AA + E A++YV
Sbjct: 56 VTSSDAVEAKSAD---EEEEKAGEPVDMEAGEFEEVLASGGEGEGQYAAVEPPEEAKVYV 112
Query: 118 GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
GNLPY + S LA++F +AG V AE++Y+R T +SRGFGFVTM +VEEA +AI +F+
Sbjct: 113 GNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEMFN 170
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 45/65 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V A++VYDR T RSRGFGFV+M S EE +AI
Sbjct: 201 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAI 260
Query: 172 RLFDG 176
DG
Sbjct: 261 SALDG 265
>gi|217072826|gb|ACJ84773.1| unknown [Medicago truncatula]
Length = 232
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
E E ++ E E A+L+VGN P+ + S LA +F +AGTV AE++Y+R TD
Sbjct: 89 ETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDL 148
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDG 176
SRGFGFVTM +VEEA+ A+ F+G
Sbjct: 149 SRGFGFVTMNTVEEAESAVEKFNG 172
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
E+EE+ + + P + +L+VGNLP+S+ S+ LAE+F AG V E++YD+ T
Sbjct: 71 EQEEDTFGDGDGPSFS---RDLKLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTG 127
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDG 176
RSRGFGFVTM SVEEA+ A + F+G
Sbjct: 128 RSRGFGFVTMSSVEEAEAAAKQFNG 152
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
SD R++VGNL + + +L +F E G V A ++YDR + RSRGFGFVT GS +E
Sbjct: 191 SDSENRVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEV 250
Query: 168 KEAIRLFDGSVSADGICIAIVLIE 191
K AI+ DG V +G I + L +
Sbjct: 251 KSAIQSLDG-VDLNGRAIRVSLAD 273
>gi|242079661|ref|XP_002444599.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
gi|241940949|gb|EES14094.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
Length = 292
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 9/86 (10%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E E AVE EE KV YVGNLPY + S LA++F +AG V AE++Y+R
Sbjct: 100 EGEGEYAAVEPPEEAKV---------YVGNLPYDIDSEGLAQLFDQAGVVEVAEVIYNRE 150
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFD 175
T +SRGFGFVTM ++EEA +AI +F+
Sbjct: 151 TGQSRGFGFVTMSTIEEADKAIEMFN 176
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 45/65 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V +A +VYDR + RSRGFGFVTM S EE +AI
Sbjct: 207 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDAI 266
Query: 172 RLFDG 176
DG
Sbjct: 267 SALDG 271
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 9/84 (10%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
EEE E VE EE KV YVGNLPY + S LA++F +AG V +E++Y+R T
Sbjct: 103 EEEVGEYVEPPEEAKV---------YVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRET 153
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLF 174
D+SRGFGFVTM ++EEA++A+ +F
Sbjct: 154 DQSRGFGFVTMSTIEEAEKAVEMF 177
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L E+F+E G V A++VYDR T RSRGFGFVTM S EE +AI
Sbjct: 211 RIYVGNLPWQVDDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQEELDDAIAA 270
Query: 174 FDGSVSADGICIAIVLIEPFNCQHF 198
DG S +G + + + E + F
Sbjct: 271 LDGQ-SLEGRALRVNVAEERPPRRF 294
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 9/84 (10%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
EEE E VE EE KV YVGNLPY + S LA++F +AG V +E++Y+R T
Sbjct: 103 EEEVGEYVEPPEEAKV---------YVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRET 153
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLF 174
D+SRGFGFVTM ++EEA++A+ +F
Sbjct: 154 DQSRGFGFVTMSTIEEAEKAVEMF 177
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L E+F+E G V A +VYDR T RSRGFGFVTM S EE +AI
Sbjct: 211 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 270
Query: 174 FDGSVSADGICIAIVLIEPFNCQHF 198
DG S +G + + + E + F
Sbjct: 271 LDGQ-SLEGRALRVNVAEERPPRRF 294
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 85/182 (46%), Gaps = 33/182 (18%)
Query: 33 PSLFKTKSPKPL-----KLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87
PSLF TKS P K K QNPS S + VT +Q
Sbjct: 20 PSLFYTKSKSPFISNSAKPFKVQNPSYNSSKFSSSVSLVSKRRTRHSSLVTFVAQTSDWA 79
Query: 88 EQEEEEEEEAVEEE----------------------EEPKVAASDEAARLYVGNLPYSMT 125
+QEE+E+ E + EEP E +++VGNLP+ +
Sbjct: 80 QQEEKEDGATWENQADATWVGETESNENEEVEVASFEEPS-----EDLKIFVGNLPFDVD 134
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185
S LA++F ++GTV AE++Y+R TDRSRGFGFVTM + EE + A+ F G DG +
Sbjct: 135 SEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKFSG-FELDGRLL 193
Query: 186 AI 187
+
Sbjct: 194 TV 195
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R YVGNLP+ + +SSL ++F+E G V SA++VYDR T R RGFGFVTM + E +AI
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAA 276
Query: 174 FDGSVSADGICIAIVLIE 191
DG S +G I + + E
Sbjct: 277 LDGQ-SFNGRAIRVNVAE 293
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 52/64 (81%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V +E++Y+R TD+SRGFGFVTM ++EEA++A
Sbjct: 115 EEAKVYVGNLPYDIDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 174
Query: 171 IRLF 174
+ +F
Sbjct: 175 VEMF 178
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L ++F+E G V A +VYDR T RSRGFGFVTM S EE +AI
Sbjct: 213 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMASQEELDDAIAA 272
Query: 174 FDGSVSADGICIAIVLIEPFNCQHF 198
DG S +G + + + E + F
Sbjct: 273 LDGQ-SLEGRALRVNVAEERPPRRF 296
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
E E ++ E E A+L+VGN P+ + S LA +F +AGTV AE++Y+R TD
Sbjct: 89 ETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDL 148
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDG 176
SRGFGFVTM +VEEA+ A+ F+G
Sbjct: 149 SRGFGFVTMNTVEEAESAVEKFNG 172
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YV NL + + +S L +VF+E G + SA +VYDR T RSRGFGFVTM E +AI
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 174 FDGSVSADGICIAIVLIE 191
DG S +G I + + E
Sbjct: 267 LDGQ-SLEGRTIRVSVAE 283
>gi|375103924|ref|ZP_09750185.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374664655|gb|EHR69440.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 129
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL YS+T +SL + FAE GTV SA+++ DR + RS+GFGFV MGS EEA+ AIR
Sbjct: 4 KLYVGNLAYSVTDASLQQQFAECGTVTSAKVMMDRDSGRSKGFGFVEMGSHEEAQAAIRK 63
Query: 174 FDGSVSADGICIAIVLIEP 192
G+ S DG + + P
Sbjct: 64 LHGA-SVDGRALVVNEARP 81
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 80/158 (50%), Gaps = 15/158 (9%)
Query: 32 LPSLFKTKSPKPLKLEKAQNPSALHLSL-------LSLSYFRQ---FSASFDGFQVTEDS 81
+ +LF K+ KP P H+SL LSL R F+A TE+
Sbjct: 15 IAALFHNKT-KPTSFSLPSKPFKFHISLNSSPSLTLSLKTNRATPLFAAQEGETLTTEEG 73
Query: 82 QDEPE----TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG 137
E E E E E E E+ A E A+L+VGNLPY + S LA +F AG
Sbjct: 74 VVETEGLIDWEPEAAENETGGEDYAGGDFAEPSEDAKLFVGNLPYDVDSEKLAMLFEPAG 133
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
TV AE++Y+R TD+SRGFGFVTM +VEEA+ F+
Sbjct: 134 TVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAKFN 171
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + S L +VF+E G V SA +VYDR T RSRGFGFVTM +E +AI
Sbjct: 207 RVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAA 266
Query: 174 FDGSVSADGICIAIVLIE 191
DG + +G I + + E
Sbjct: 267 LDGQI-LEGRTIKVSVAE 283
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 51/66 (77%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+++ S+ LA +F +AG+V E+VYDR+T RSRGFGFVTMGSVEE A
Sbjct: 85 EDLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAA 144
Query: 171 IRLFDG 176
+ F+G
Sbjct: 145 VEQFNG 150
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A +LYVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS +E
Sbjct: 189 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 248
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DG V DG I + + E
Sbjct: 249 AISNLDG-VDLDGRQIRVTVAE 269
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V S+ R+YVGNLP+ + S L ++F+E G V SA +V+DR T+RSRGFGFVT
Sbjct: 233 ERPPRV--SEPGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVT 290
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M + E +AI DG + DG I + + E
Sbjct: 291 MSTESELNDAIAALDGQ-NLDGRPIRVNVAE 320
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 50/64 (78%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+++VGNLPY + S LA +F +AGTV AE++Y+R TD SRGFGFVTM +VEE+++A
Sbjct: 147 EEAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKA 206
Query: 171 IRLF 174
+ +
Sbjct: 207 VEML 210
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
E++E+ + +E EP + +L+VGNLP+++ S+ LA +F +AG V E++YD++T
Sbjct: 72 EQDEDVLSDEGEPSFSPD---LKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITG 128
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDG 176
RSRGFGFVTM +VEE + A + F+G
Sbjct: 129 RSRGFGFVTMSTVEEVEAAAQQFNG 153
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 104 PKVAAS-DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
P+ A+ + R+YVGNL + + +L +F+E G V A ++YDR T RSRGFGFVT
Sbjct: 194 PRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYN 253
Query: 163 SVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHF 198
S EE AI DG V +G I + + E + F
Sbjct: 254 SAEEVNRAIESLDG-VDLNGRSIRVTMAEARPRRQF 288
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 52/64 (81%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V +E++Y+R TD+SRGFGFVTM ++EEA++A
Sbjct: 113 EEAKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKA 172
Query: 171 IRLF 174
+ +F
Sbjct: 173 VEMF 176
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+ + S L E+F+E G V A +VYDR T RSRGFGFVTM S E +AI
Sbjct: 210 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQPELDDAIAA 269
Query: 174 FDGSVSADGICIAIVLIEPFNCQHF 198
DG S +G + + + E + F
Sbjct: 270 LDGQ-SLEGRALRVNVAEERPPRRF 293
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 51/63 (80%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+L+VGNLPY + S LA +F +AG V AE++Y+R TD+SRGFGFVTM +VEEA++A+
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 173 LFD 175
+++
Sbjct: 196 MYN 198
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+++ R+YVGN+P+ + + L ++F+E G V SA +VYDR T RSRGFGFVTM S E +
Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSD 286
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DG S DG I + + E
Sbjct: 287 AIANLDGQ-SLDGRTIRVNVAE 307
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
+EE+ + + P + +L+VGNLP+++ S+ LAE+F AG V E++YD+ T R
Sbjct: 69 QEEDTFSDGDGPSFSPD---LKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGR 125
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDG 176
SRGFGFVTM SVEEA+ A + F+G
Sbjct: 126 SRGFGFVTMSSVEEAEAAAQQFNG 149
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SD R++V NL + + + +L +F E G V A ++YDR + RSRGFGFVT S +E
Sbjct: 188 SDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVN 247
Query: 169 EAIRLFDGSVSADGICIAIVLIE 191
AI+ +G V +G I + L +
Sbjct: 248 SAIQSLNG-VDLNGRAIRVSLAD 269
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 65/101 (64%), Gaps = 8/101 (7%)
Query: 87 TEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
TE+ E E + EEE E R++VGNLP+S+ S+ LA +F +AG+V E++Y
Sbjct: 64 TEELEAEGQPGGEEE-------FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIY 116
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
D++T RSRGFGFVTM SV+E + A+ F+G V DG + +
Sbjct: 117 DKLTGRSRGFGFVTMSSVQEVEAAVEQFNGYV-LDGRSLRV 156
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A R+YVGNL + + +S+LA +F+E G V A IVYDR + RSRGFGFVT GS EE + A
Sbjct: 175 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENA 234
Query: 171 IRLFDGSVSADGICIAIVLIE 191
I DGS DG I + + E
Sbjct: 235 ISNLDGS-DLDGRQIRVTVAE 254
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +L+VGNLP+S+ S+ LA +F +AG+V E+VYDR+T RSRGFGFVTM S EEA A
Sbjct: 75 EDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAA 134
Query: 171 IRLFDG 176
+ F+G
Sbjct: 135 VEQFNG 140
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS EE
Sbjct: 180 DSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNN 239
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DG + DG I + + E
Sbjct: 240 AISNLDG-IDLDGRQIRVTVAE 260
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 9/86 (10%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E E AVE EE A++YVGNLPY + S LA++F +AG V AE++Y++
Sbjct: 97 EGEGEYAAVEPPEE---------AKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKE 147
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFD 175
T +SRGFGFVTM ++EEA +AI +F+
Sbjct: 148 TGQSRGFGFVTMSTIEEADKAIEMFN 173
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 44/65 (67%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ S L ++F+E G V +A +VYDR T RSRGFGFVTM S EE +AI
Sbjct: 204 AFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAI 263
Query: 172 RLFDG 176
DG
Sbjct: 264 SALDG 268
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNLP+S+ S+ LA +F +AG+V E+VYDR+T RSRGFGFVTM S EEA A+
Sbjct: 79 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQ 138
Query: 174 FDG 176
F+G
Sbjct: 139 FNG 141
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A ++YVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT G+ E
Sbjct: 181 DSANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNN 240
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DG + DG I + + E
Sbjct: 241 AISNLDG-IDLDGRQIRVTVAE 261
>gi|407005316|gb|EKE21467.1| RNA-binding protein, partial [uncultured bacterium]
Length = 76
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 49/65 (75%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNLPY++ + L ++FA+AG V SA I+ D+ T RS+GFGFV M + EEA +AI
Sbjct: 2 AKKLYVGNLPYTLKDADLNQLFAQAGAVESAVIINDKATGRSKGFGFVEMSADEEATKAI 61
Query: 172 RLFDG 176
+FDG
Sbjct: 62 EMFDG 66
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI
Sbjct: 224 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 283
Query: 172 RLFDGSVSADGICIAIVLIE 191
DG + +G I + + E
Sbjct: 284 SALDGQ-NLEGRAIRVNVAE 302
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A
Sbjct: 129 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 188
Query: 171 IRLFD 175
+ F+
Sbjct: 189 VEKFN 193
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 104 PKVAAS--DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
P+ S D + +LYVGNL + + +S+L +F+E GTV A+++YDR + RSRGFGFVT
Sbjct: 110 PRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTY 169
Query: 162 GSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
GS EE AI DG V DG I + + E
Sbjct: 170 GSAEEVNNAISNLDG-VDLDGRQIRVTVAE 198
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 49/66 (74%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+S+ S+ LA +F +AG+V E+VYDR T RSRGFGFVTM + EEA A
Sbjct: 19 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 78
Query: 171 IRLFDG 176
I F+G
Sbjct: 79 IEQFNG 84
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 50/62 (80%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+++VGNLPY + S LA +F +AGTV AE++Y+R TD SRGFGFV+M +VEEA++A+
Sbjct: 141 AKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVE 200
Query: 173 LF 174
+F
Sbjct: 201 MF 202
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + R+YVGNLP+ + ++ L ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 225 ERPPRVF--EPGYRIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVT 282
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHF 198
M + E +AI DG S DG I + + E ++F
Sbjct: 283 MSTETELNDAIAALDGR-SLDGRAIRVNVAEQRPRRNF 319
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E EE+ ++ P+ + +L+VGNLP+++ S+ LA++F AG V E++YD+V
Sbjct: 68 EFEVEEDGFADDAAPQQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKV 127
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDG 176
T RSRGFGFVTM SV E + A F+G
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAANQFNG 154
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +FAE G V A ++YDR + RS+GFGFVT S +E + AI
Sbjct: 205 RVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAINS 264
Query: 174 FDGSVSADGICIAI 187
+G+ DG I +
Sbjct: 265 LNGA-DLDGRQIRV 277
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRGFGFVTM SVEE + A+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 174 FDGSVSADGICIAI 187
F+G + DG + +
Sbjct: 147 FNGYI-LDGRSLRV 159
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
E+ + A EA R+YVGNL + + +++LA +F+ G V A+++YDR + RSRGFGFV
Sbjct: 167 REQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFV 226
Query: 160 TMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
T GS EE + A+ DG+ DG I + + E
Sbjct: 227 TYGSAEEVENAVSNLDGA-DMDGRQIRVTVAE 257
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 80 DSQDEPETEQEEEE-EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGT 138
+SQD E ++ E + E AV E E E A+L+VGNL Y + S +LA +F +AGT
Sbjct: 103 ESQDVSEGDESEGDVSEGAVSERAE--FPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGT 160
Query: 139 VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
V AE++Y+R TD+SRGFGFVTM SV+EA+ A+ F+
Sbjct: 161 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 197
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 219 ERAPRVY--EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 276
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M V+E EAI DG + +G I + + E
Sbjct: 277 MSDVDELNEAISALDGQ-NLEGRAIRVNVAE 306
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 234 ERAPRVY--EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQH 197
M V+E EAI DG + +G I + + E +H
Sbjct: 292 MSDVDELNEAISALDGQ-NLEGRAIRVNVAEERPPRH 327
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 171 IRLFD 175
+ F+
Sbjct: 208 VEKFN 212
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRGFGFVTM SVEE + A
Sbjct: 79 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVA 138
Query: 171 IRLFDGSVSADGICIAI 187
+ F+G V DG + +
Sbjct: 139 VDQFNGYV-LDGRSLRV 154
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A R+YVGNL + + +S+LA +F+E G V A I+YDR + RSRGFGFVT GS EE + A
Sbjct: 175 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 234
Query: 171 IRLFDGSVSADGICIAIVLIE 191
I DG+ DG I + + E
Sbjct: 235 ISNLDGA-DLDGRQIRVTVAE 254
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRGFGFVTM SVEE + A+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 174 FDGSVSADGICIAI 187
F+G + DG + +
Sbjct: 147 FNGYI-LDGRSLRV 159
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
E+ + A EA R+YVGNL + + +++LA +F+ G V A+++YDR + RSRGFGFV
Sbjct: 167 REQSSRRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFV 226
Query: 160 TMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
T GS EE + A+ DG+ DG I + + E
Sbjct: 227 TYGSAEEVENAVSNLDGA-DMDGRQIRVTVAE 257
>gi|357148860|ref|XP_003574918.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 51/65 (78%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y+R + +SRGFGFVTM ++EEA +A
Sbjct: 106 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 165
Query: 171 IRLFD 175
I +F+
Sbjct: 166 IEMFN 170
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+ AS A R YVGNLP+ S L ++F+E G V +A +VYDR T RSRGFGFVT
Sbjct: 192 ERPPRQFAS--AFRAYVGNLPWQAEDSRLVQLFSEHGEVLNATVVYDRETGRSRGFGFVT 249
Query: 161 MGSVEEAKEAIRLFDG 176
M S EE +AI DG
Sbjct: 250 MASKEELDDAISALDG 265
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 4/92 (4%)
Query: 99 EEEEEPKVAASDEAA---RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
EE E + DE + R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRG
Sbjct: 64 EELEAEGRSGGDEFSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRG 123
Query: 156 FGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
FGFVTM SVEE + A+ F+G V DG + +
Sbjct: 124 FGFVTMSSVEEVEVAVDQFNGYV-LDGRSLRV 154
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A R+YVGNL + + +S+LA +F+E G V A I+YDR + RSRGFGFVT GS EE + A
Sbjct: 175 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 234
Query: 171 IRLFDGSVSADGICIAIVLIE 191
I DG+ DG I + + E
Sbjct: 235 ISNLDGA-DLDGRQIRVTVAE 254
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 88/173 (50%), Gaps = 18/173 (10%)
Query: 8 MAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPS-ALHLS--LLSLSY 64
MAASS C + A T + NH ++ +K+ + P +L LS L
Sbjct: 1 MAASSCYC-----IPANTHLNLNHKTNVLPLLRMSSVKI--SMRPRCSLQLSHVLARRKV 53
Query: 65 FRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSM 124
FR + + + Q+TE Q PE E+ +E + EEE P+ +LYVGNLP S
Sbjct: 54 FRITALAQEETQITE--QSVPEEEETNKERQPKNEEELPPR------RTKLYVGNLPRSC 105
Query: 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
+ L ++F E GTV S E+V + T SRGF FVTM +V+EAK AI GS
Sbjct: 106 DIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSAIEKLQGS 158
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S+ + +L+E+F++ G V A ++Y R RSR +GFV S E + AI
Sbjct: 307 VYVSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAAL 366
Query: 175 D 175
D
Sbjct: 367 D 367
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+ L +F++ G V++A+++Y R FGFV + S E ++AI
Sbjct: 190 QLFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVS 249
Query: 174 FDG 176
G
Sbjct: 250 LHG 252
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 4/92 (4%)
Query: 99 EEEEEPKVAASDEAA---RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
EE E + DE + R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRG
Sbjct: 66 EELEAEGRSGGDEFSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRG 125
Query: 156 FGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
FGFVTM SVEE + A+ F+G V DG + +
Sbjct: 126 FGFVTMSSVEEVEVAVDQFNGYV-LDGRSLRV 156
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A R+YVGNL + + +S+LA +F+E G V A I+YDR + RSRGFGFVT GS EE + A
Sbjct: 177 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 236
Query: 171 IRLFDGSVSADGICIAIVLIE 191
I DG+ DG I + + E
Sbjct: 237 ISNLDGA-DLDGRQIRVTVAE 256
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 80 DSQDEPETEQEEEE-EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGT 138
+SQD E ++ E + E AV E E E A+L+VGNL Y + S +LA +F +AGT
Sbjct: 93 ESQDVSEGDESEGDVSEGAVSERAE--FPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGT 150
Query: 139 VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
V AE++Y+R TD+SRGFGFVTM SV+EA+ A+ F+
Sbjct: 151 VEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 187
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 209 ERAPRVY--EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 266
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M V+E EAI DG + +G I + + E
Sbjct: 267 MSDVDELNEAISALDGQ-NLEGRAIRVNVAE 296
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + +LYVGNL + + +S+L +F+E GTV A+++YDR + RSRGFGFVT GS EE
Sbjct: 172 DSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNN 231
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DG V DG I + + E
Sbjct: 232 AISNLDG-VDLDGRQIRVTVAE 252
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+S+ S+ LA +F +AG+V E+VYDR T RSRGFGFVTM + EEA A
Sbjct: 73 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 132
Query: 171 IRLFDG 176
+ F+G
Sbjct: 133 VEQFNG 138
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + +LYVGNL + + +S+L +F+E GTV A+++YDR + RSRGFGFVT GS EE
Sbjct: 177 DSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNN 236
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DG V DG I + + E
Sbjct: 237 AISNLDG-VDLDGRQIRVTVAE 257
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +++VGNLP+S+ S+ LA +F +AG+V E+VYDR T RSRGFGFVTM + EEA A
Sbjct: 78 EDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAA 137
Query: 171 IRLFDG 176
+ F+G
Sbjct: 138 VEQFNG 143
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Query: 73 DGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEV 132
+G E+++D E++ E + E E E E A+L+VGNL Y + S +LA +
Sbjct: 93 EGSVAVEENEDSFESQDAEGDVSEGAEFPE------PSEEAKLFVGNLAYDVDSQALAML 146
Query: 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
F +AGTV AE++Y+R TD+SRGFGFVTM +VEEA+ A+ F+
Sbjct: 147 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFN 189
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L +VF+E G V A +VYDR T RSRGFGFVT
Sbjct: 211 ERAPRVY--EPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVT 268
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M + E +AI DG + +G I + + E
Sbjct: 269 MSNENELNDAIAALDGQ-NMEGRAIRVNVAE 298
>gi|160899081|ref|YP_001564663.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333914782|ref|YP_004488514.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|160364665|gb|ABX36278.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333744982|gb|AEF90159.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 115
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNLPYS+T SSL FAE G VASA+++ DR T RS+GFGFV M S E A+ AI
Sbjct: 4 KIYVGNLPYSVTDSSLESNFAEFGNVASAKVMMDRETGRSKGFGFVEMASAEVAQAAITG 63
Query: 174 FDGSVSADGICIAIVLIEP 192
G +S DG I + L P
Sbjct: 64 LHG-MSVDGRSIVVNLARP 81
>gi|407940456|ref|YP_006856097.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407898250|gb|AFU47459.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 116
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++++YVGNLPYS+T ++L FAE G V+SA+++ DR T RS+GFGFV M + E A+ AI
Sbjct: 2 SSKIYVGNLPYSVTDATLESNFAEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAI 61
Query: 172 RLFDGSVSADGICIAIVLIEP 192
R G +S DG I + L P
Sbjct: 62 RALHG-MSVDGRSIVVNLARP 81
>gi|326507732|dbj|BAJ86609.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 100
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A +LYVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS +E
Sbjct: 11 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 70
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DG V DG I + + E
Sbjct: 71 AISNLDG-VDLDGRQIRVTVAE 91
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 234 ERAPRVY--EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M V+E EAI DG + +G I + + E
Sbjct: 292 MSDVDELNEAISALDGQ-NLEGRAIRVNVAE 321
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 171 IRLFD 175
+ F+
Sbjct: 208 VEKFN 212
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 220 ERAPRVY--EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 277
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M V+E EAI DG + +G I + + E
Sbjct: 278 MSDVDELNEAISALDGQ-NLEGRAIRVNVAE 307
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A
Sbjct: 134 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 193
Query: 171 IRLFD 175
+ F+
Sbjct: 194 VEKFN 198
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+V + A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 67 ERAPRV--YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 124
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
M V+E EAI DG + +G I + + E
Sbjct: 125 MSDVDELNEAISALDGQ-NLEGRAIRVNVAE 154
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
+F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A+ F+
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 45
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E EE+ + PK + +L+VGNLP+++ S+ LA++F AG V E++YD++
Sbjct: 68 EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDG 176
T RSRGFGFVTM SV E + A + F+G
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNG 154
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A ++YDR + RS+GFGFVT S +E + AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 174 FDGSVSADGICIAI 187
DG+ DG I +
Sbjct: 265 LDGA-DLDGRQIRV 277
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName: Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor
gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E EE+ + PK + +L+VGNLP+++ S+ LA++F AG V E++YD++
Sbjct: 68 EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDG 176
T RSRGFGFVTM SV E + A + F+G
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNG 154
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A ++YDR + RS+GFGFVT S +E + AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 174 FDGSVSADGICIAI 187
DG+ DG I +
Sbjct: 265 LDGA-DLDGRQIRV 277
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 62/93 (66%), Gaps = 4/93 (4%)
Query: 95 EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
E+ VE E+P+ + E +L+VGNLP+S+ S++LA +F AG V E++YD++T RSR
Sbjct: 72 EDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSR 128
Query: 155 GFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
GFGFVTM + EE + A + F+G DG I +
Sbjct: 129 GFGFVTMSTKEEVEAAEQQFNG-YEIDGRAIRV 160
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + R+YVGNL + + +L E+F+E G V A++VYDR + RSRGFGFVT S +E +
Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVND 263
Query: 170 AIRLFDGSVSADGICIAIVLIEPFNCQHF 198
AI +G V DG I + E + F
Sbjct: 264 AIDSLNG-VDLDGRSIRVSAAEERPRRQF 291
>gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein, partial [Spinacia oleracea]
Length = 220
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 9/86 (10%)
Query: 99 EEEEEPKVAASDEAAR---------LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E+E V D+A R ++VGNLP+++ S+ LA +F AGTV E++YD++
Sbjct: 15 EFEQEEDVMGDDDAGRQPNFSPDLKIFVGNLPFNVDSAELAGLFGAAGTVEMVEVIYDKL 74
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFD 175
T RSRGFGFVTM SVEE + A + F+
Sbjct: 75 TGRSRGFGFVTMSSVEEVEAAAQQFN 100
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNL + + +L +F+E G V A+++YDR T RSRGFGFVT S E AI
Sbjct: 136 RVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIES 195
Query: 174 FDGSVSADGICIAIVLIE 191
DG V +G I + E
Sbjct: 196 LDG-VDLNGRSIRVTAAE 212
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+ A R++VGNLP+ SL ++F++ G V A++VYDR T RSRGFGFVT+ S +E +E
Sbjct: 213 NSANRVFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEE 272
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DGS DG I + L E
Sbjct: 273 AISSLDGS-DMDGRQIKVTLAE 293
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 47/63 (74%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNLP+S+ S+ LAE+F ++G V E++YDR T RSRGF FVTM + +A EA+
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 174 FDG 176
F+G
Sbjct: 174 FNG 176
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P+V A A +LYVGN+P ++T+ L ++FA GTV AE++YD+ T+RSR FGFVTM
Sbjct: 59 EAPEVVA---ARKLYVGNVPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTM 115
Query: 162 GSVEEAKEAIRLFDGSVSADGICIAIVLIEPF 193
+VEEA A+ +G+ G I + + E F
Sbjct: 116 STVEEANAAVEALNGT-EVGGRKIKVNVTESF 146
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T+ L F+E G + SA + + T +S+G+GFVT S EE +
Sbjct: 163 DSQYKVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEA 222
Query: 170 AIRLFDGS 177
A+ F+ +
Sbjct: 223 AVATFNNA 230
>gi|284108895|ref|ZP_06386469.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829840|gb|EFC34132.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
Length = 90
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 46/64 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL YS T L ++FA+ GTV SA +V DR T RSRGFGFV MGS EEA +AI
Sbjct: 4 KIYVGNLSYSTTDQELQDLFAQHGTVQSANVVTDRYTGRSRGFGFVEMGSGEEAGQAIEA 63
Query: 174 FDGS 177
+G+
Sbjct: 64 LNGT 67
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y+R + +SRGFGFVTM ++EEA +A
Sbjct: 1 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 60
Query: 171 IRLFD 175
I F+
Sbjct: 61 IETFN 65
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+ AS + R YVGNLP+ S L ++F+E G V +A +VYDR T RSRGFGFVT
Sbjct: 87 ERPPRQFAS--SFRAYVGNLPWQAEDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVT 144
Query: 161 MGSVEEAKEAIRLFDG 176
M S E+ AI DG
Sbjct: 145 MASKEDLDSAISALDG 160
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P+ SD + R+YVGNLP+ + S L ++F+E G V A +VYDR + RSRGFGFVT+
Sbjct: 113 ERPR--ESDPSLRVYVGNLPWQVDDSRLEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTL 170
Query: 162 GSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
+ EE +AI DG S +G + + + E
Sbjct: 171 ATREEVDDAIAALDGQ-SLEGRALRVNVAE 199
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+L+VGN+PY S LA +F +AG V AE++Y+R TD+SRGFGFVTM +VEEA+ A+
Sbjct: 30 AKLFVGNIPYD-DSEKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAVE 88
Query: 173 LF 174
+
Sbjct: 89 ML 90
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y+R + +SRGFGFVTM ++EEA +A
Sbjct: 103 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 162
Query: 171 IRLFD 175
I F+
Sbjct: 163 IETFN 167
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R YVGNLP+ S L ++F+E G V +A IVYDR T RSRGFGFVTM S E+ AI
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 174 FDG 176
DG
Sbjct: 260 LDG 262
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 49/63 (77%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A++YVGNLPY + S LA++F +AG V AE++Y+R T +SRGFGFVTM ++EEA +AI
Sbjct: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
Query: 173 LFD 175
+ +
Sbjct: 76 MLN 78
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 45/65 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V +A +VYDR + RSRGFGFV+M S EE +AI
Sbjct: 109 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 168
Query: 172 RLFDG 176
DG
Sbjct: 169 SALDG 173
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y+R + +SRGFGFVTM ++EEA +A
Sbjct: 103 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKA 162
Query: 171 IRLFD 175
I F+
Sbjct: 163 IETFN 167
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R YVGNLP+ S L ++F+E G V +A IVYDR T RSRGFGFVTM S E+ AI
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 174 FDG 176
DG
Sbjct: 260 LDG 262
>gi|406873754|gb|EKD23843.1| hypothetical protein ACD_81C00167G0002 [uncultured bacterium]
Length = 111
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVG LPYS T +L ++F++AGTV SA I+ D++T RS+GFGFV M S +EA++AI
Sbjct: 2 GKKLYVGGLPYSTTQDALNDLFSQAGTVESAMIIIDKMTGRSKGFGFVEMASDDEAEKAI 61
Query: 172 RLFDG 176
+F+G
Sbjct: 62 DMFNG 66
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 49/66 (74%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +L+VGNLP+++ S+ LA +F +AG+V E+VYDR+T RSRGFGFVTM + EE A
Sbjct: 82 EDLKLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAA 141
Query: 171 IRLFDG 176
+ F+G
Sbjct: 142 VEQFNG 147
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +LYVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS +E
Sbjct: 186 DSGNKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 245
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DG V DG I + + E
Sbjct: 246 AISNLDG-VDLDGRQIRVTVAE 266
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
+EE+ + +EP + +L+VGNLP+++ S+ LA++F AG V E+ YD+VT R
Sbjct: 74 QEEDVFGDGDEPSFSPD---LQLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGR 130
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDG 176
SRGFGFVTM ++EE + A + F+G
Sbjct: 131 SRGFGFVTMSTIEEVEAASQQFNG 154
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + R+YVGNL +++ S+L +F E G V A++VYDR + RS+GFGFVT S EE ++
Sbjct: 199 DSSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVED 258
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
A+ +G+ DG I + + E
Sbjct: 259 AVDSLNGA-ELDGRAIRVSVAE 279
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 9/87 (10%)
Query: 92 EEEEEAVEEEEE--PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E+ ++ VEEE P + +++VGNLP+S S++LAE+F AG V E++YD++
Sbjct: 71 EDGDDGVEEERNFSPDL-------KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKL 123
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDG 176
T RSRGFGFVTM S EE + A + F+G
Sbjct: 124 TGRSRGFGFVTMSSKEEVEAACQQFNG 150
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A++VYDR + RSRGFGFVT S EE AI
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 174 FDGSVSADGICIAI 187
DG V +G I +
Sbjct: 249 LDG-VDLNGRAIRV 261
>gi|221065733|ref|ZP_03541838.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|264678761|ref|YP_003278668.1| RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
gi|220710756|gb|EED66124.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|262209274|gb|ACY33372.1| RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
Length = 113
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ ++YVGNLPYS+T SSL FAE GTV SA+++ DR T RS+GF FV M S +E + AI
Sbjct: 2 STKIYVGNLPYSVTDSSLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAI 61
Query: 172 RLFDGSVSADGICIAIVLIEPF-NCQHFGNGR 202
G +S DG I + L +P + FG R
Sbjct: 62 SGLHG-MSVDGRSIVVNLAKPREEGRGFGGNR 92
>gi|120610816|ref|YP_970494.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120589280|gb|ABM32720.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNLPYS+T SL FAE G V S++I+ DR T RS+GFGFV M S E+A+ AI
Sbjct: 4 KIYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAITG 63
Query: 174 FDGSVSADGICIAIVLIEP 192
+G +S DG I + L P
Sbjct: 64 LNG-LSVDGRSIVVNLARP 81
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 8 MAASSSLC---NKLYNLQ-AITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLS 63
MAASS C N NL + +P+ +PS+ K P L+ + HL L S +
Sbjct: 1 MAASSCYCAPANTHLNLNYRLNSLPSLRIPSV-KISMPPHFSLQLS------HL-LASRN 52
Query: 64 YFRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYS 123
FR + + + Q TE S+ E E E++ +++ ++ E + + +LYVGNLP S
Sbjct: 53 VFRITALTQEEIQTTEQSEPEEEETNAEQQPKDSTRQKPENEEKSPSNRTKLYVGNLPRS 112
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
S+ L +F E GTV SAE+V + T SRGF FVTM +V EAK AI GS
Sbjct: 113 CDSAQLTHLFQEFGTVESAEVVRNEETGLSRGFAFVTMSTVIEAKAAIEKLQGS 166
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+ GNL +S+ + L ++F+E GTV A++VY+ R FGFV + S E + AI
Sbjct: 198 QLFAGNLAWSVKNEILRDLFSEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVS 257
Query: 174 FDGSVSADGICIAIVLIEPFNCQHF 198
+G G + + + P N + +
Sbjct: 258 LNGK-EFHGRNLVVRQVRPTNKEFY 281
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNLPY + S LA++F +AG V AE++Y+R T +SRGFGFVTM ++EEA +AI +
Sbjct: 128 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 187
Query: 174 FD 175
+
Sbjct: 188 LN 189
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 45/65 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V +A +VYDR + RSRGFGFV+M S EE +AI
Sbjct: 220 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 279
Query: 172 RLFDG 176
DG
Sbjct: 280 SALDG 284
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 48/62 (77%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNLPY + S LA++F +AG V AE++Y+R T +SRGFGFVTM ++EEA +AI +
Sbjct: 129 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 188
Query: 174 FD 175
+
Sbjct: 189 LN 190
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 45/65 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V +A +VYDR + RSRGFGFV+M S EE +AI
Sbjct: 221 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 280
Query: 172 RLFDG 176
DG
Sbjct: 281 SALDG 285
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 6/97 (6%)
Query: 101 EEEPKVAASDEAA-----RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
+EE ++ DE + +L+VGNLP+++ S+ LA +F AG V E++YD+VT RSRG
Sbjct: 73 QEEDFLSDGDEQSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTGRSRG 132
Query: 156 FGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192
FGFVTM ++EE + A + F+G DG + + P
Sbjct: 133 FGFVTMTTIEEVEAASKQFNG-YELDGRTLRVNFGPP 168
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D R+YVGNL +++ + +L +F E G V A++VYDR + RSRGFGFVT S EE
Sbjct: 186 DSGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDN 245
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI +G+ DG I + + E
Sbjct: 246 AIDSLNGA-ELDGRAIRVSVAE 266
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 62/93 (66%), Gaps = 4/93 (4%)
Query: 95 EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
E+ VE E+P+ + E +L+VGNLP+S+ S++LA +F AG V E++YD+++ RSR
Sbjct: 73 EDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSR 129
Query: 155 GFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
GFGFVTM + EE + A + F+G DG I +
Sbjct: 130 GFGFVTMSTKEEVEAAEQQFNG-YEIDGRAIRV 161
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + R+YVGNL + + +L E+F+E G V A++VYDR + RSRGFGFVT S +E +
Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 264
Query: 170 AIRLFDGSVSADGICIAIVLIEPFNCQHF 198
AI +G + DG I + E + F
Sbjct: 265 AIDSLNG-IDLDGRSIRVSAAEERPRRQF 292
>gi|299530322|ref|ZP_07043747.1| RNA-binding region RNP-1 [Comamonas testosteroni S44]
gi|298721693|gb|EFI62625.1| RNA-binding region RNP-1 [Comamonas testosteroni S44]
Length = 113
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ ++YVGNLPYS+T S+L FAE GTV SA+++ DR T RS+GF FV M S +E + AI
Sbjct: 2 STKIYVGNLPYSVTDSNLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAI 61
Query: 172 RLFDGSVSADGICIAIVLIEPF-NCQHFGNGR 202
G +S DG I + L +P + FG R
Sbjct: 62 SALHG-MSVDGRSIVVNLAKPREEGRGFGGNR 92
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 88 EQEEEEEEEAV----EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
EQ+E +EE A ++ P VAAS +LY GNLPY+ S+ LA + E + E
Sbjct: 87 EQDEVQEEGAAVGASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVE 146
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
++YDR T RSRGF FVTM +V++ + I+ DGS+
Sbjct: 147 VLYDRTTGRSRGFAFVTMTTVQDCELVIKNLDGSL 181
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 103 EPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+PK A E +L+VGNL +++TS L E F GTV A ++YD T RSRG+GFV
Sbjct: 196 KPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCY 255
Query: 162 GSVEEAKEAIRLFDG 176
+ EE EA+ +G
Sbjct: 256 STREEMDEALSSLNG 270
>gi|395007942|ref|ZP_10391636.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394314048|gb|EJE51000.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 117
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++++YVGNLPYS+T S+L F+E G V SA+++ DR T RS+GFGFV M S E A+ AI
Sbjct: 2 SSKIYVGNLPYSVTDSTLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAI 61
Query: 172 RLFDGSVSADGICIAIVLIEP 192
G +S DG I + L P
Sbjct: 62 TGLHG-MSVDGRSIVVNLARP 81
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 48/63 (76%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNLP+++ S+ LA +F AG V E++YD+VT RSRGFGFVTM S++E + A +
Sbjct: 93 KLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQ 152
Query: 174 FDG 176
F+G
Sbjct: 153 FNG 155
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E RLYVGNL +S+ + +L F+E G V A++VYDR + RSRGFGFVT S EE + A
Sbjct: 194 EGNRLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENA 253
Query: 171 IRLFDGSVSADGICIAIVLIE 191
I +G+ DG I + + E
Sbjct: 254 IDSLNGA-ELDGRAIRVSVAE 273
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 62/95 (65%), Gaps = 12/95 (12%)
Query: 93 EEEEAVEEEEEPKVAASDEAA-----------RLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
EE EA +++EE + SDE A +++VGNLP+S+ S++LAE+F AG V
Sbjct: 69 EEVEAGDDDEE-EGGLSDEGASYEERNANPDLKIFVGNLPFSVDSAALAELFERAGDVEM 127
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
E++YD++T RSRGFGFVTM S E + A + F+G
Sbjct: 128 VEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNG 162
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + R+YVGNL +S+ L +F+E G V A++VYDR + RSRGFGFVT S +E +
Sbjct: 201 DSSNRVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 260
Query: 170 AIRLFDGSVSADGICIAI 187
AI DG V G I +
Sbjct: 261 AIESLDG-VDLGGRAIRV 277
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 50/65 (76%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A++YVGNLPY + S LA++F +AG V AE++Y++ + +SRGFGFVTM ++EEA +A
Sbjct: 103 EEAKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEADKA 162
Query: 171 IRLFD 175
I F+
Sbjct: 163 IETFN 167
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R YVGNLP+ S L ++F+E G V +A IVYDR T RSRGFGFVTM S E+ AI
Sbjct: 200 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 259
Query: 174 FDG 176
DG
Sbjct: 260 LDG 262
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 77 VTEDSQDEPETEQEEEEEEEAV----EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEV 132
V E ++ EQ+E +EE A ++ P VAAS +LY GNLPY+ S+ LA +
Sbjct: 76 VAERGREVQLQEQDEVQEEGAAVGASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGI 135
Query: 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
E + E++YDR T RSRGF FVTM +V++ + I+ DGS+
Sbjct: 136 VQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELVIKNLDGSL 181
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 103 EPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+PK A E +L+VGNL +++TS L E F GTV A ++YD T RSRG+GFV
Sbjct: 196 KPKQALYPETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCY 255
Query: 162 GSVEEAKEAIRLFDG 176
+ EE EA+ +G
Sbjct: 256 STREEMDEALSSLNG 270
>gi|406997918|gb|EKE15908.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 93
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVG LPYS T SL E F++AG V SA I+ DR++ RS+GFGFV M + E A++AI
Sbjct: 2 AKKLYVGGLPYSTTEESLGEHFSQAGAVESANIITDRMSGRSKGFGFVEMSTEEGAQKAI 61
Query: 172 RLFDG 176
+F G
Sbjct: 62 EMFHG 66
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL +++ S+LA +F E G+V A ++YDR + RSRGFGFVT GS EE ++A+
Sbjct: 188 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSSEEVEKAVSN 247
Query: 174 FDGSVSADGICIAIVLIE 191
DG+ DG I + + E
Sbjct: 248 LDGT-DLDGRQIRVTVAE 264
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRGFGFVTM +VEE +EA
Sbjct: 75 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 134
Query: 171 IRLFDGSVSADGICIAI 187
+ +G V DG I +
Sbjct: 135 VEQLNGYV-LDGRTIKV 150
>gi|351730017|ref|ZP_08947708.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 115
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++++YVGNLPYS+T S L F+E G V SA+++ DR T RS+GFGFV M S E A+ AI
Sbjct: 2 SSKIYVGNLPYSVTDSVLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAI 61
Query: 172 RLFDGSVSADGICIAIVLIEP 192
G +S DG I + L P
Sbjct: 62 SALHG-MSVDGRSIVVNLARP 81
>gi|196232841|ref|ZP_03131691.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196223040|gb|EDY17560.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 107
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + T L + FAEAGTV+ A ++ D+ T +SRGFGFVTM S EEA++AI L
Sbjct: 4 KLYVGNLSFDTTEMDLQDTFAEAGTVSEATLMQDKFTGKSRGFGFVTMSSSEEAQKAIDL 63
Query: 174 FDGSV 178
F G
Sbjct: 64 FHGKT 68
>gi|189219581|ref|YP_001940222.1| RNA-binding protein, RRM domain [Methylacidiphilum infernorum V4]
gi|189186439|gb|ACD83624.1| RNA-binding protein, RRM domain [Methylacidiphilum infernorum V4]
Length = 117
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAA---RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
E++E E E + +P + ++A +LYVGNLPY++T S L E+FA+ G + + EIV
Sbjct: 5 EQKEPTEHKELQSQPSSLSIEQAVTSNKLYVGNLPYNLTDSDLFEIFAKIGPIKNVEIVR 64
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
DR ++R++GFGFV M ++ A++A + +G
Sbjct: 65 DRKSNRTKGFGFVEMADLDSARKAATVLNG 94
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 85 PETEQEEEEEEEAVE---EEEEPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVA 140
PE ++ ++ E AVE ++ P VAAS +LY GNLPY+ S+ LA + E +
Sbjct: 92 PEQDEVQDGEGGAVEGSSQDSRPSVAASTTTTTKLYFGNLPYNCDSAQLAGIVQEYASPE 151
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
E++YDR+T RSRGF FVTM +V++ + I+ DGS+
Sbjct: 152 MVEVLYDRITGRSRGFAFVTMTTVQDCELVIKNLDGSL 189
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS L E F G V A ++YD T RSRG+GFV + EE EAI
Sbjct: 216 KLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISS 275
Query: 174 FDGS 177
+G+
Sbjct: 276 LNGT 279
>gi|406917506|gb|EKD56278.1| RNA-binding protein [uncultured bacterium]
Length = 89
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E +LYVGNLPYS TS SL E+FA +G V A ++ D+ + RS+GFGFVTM A++
Sbjct: 2 EEKNKLYVGNLPYSATSDSLKELFAGSGEVVDAVVISDKFSGRSKGFGFVTMKDDAAAEK 61
Query: 170 AIRLFDGSVSADGICIAIVLIEPF 193
AI+ DG DG I + + P
Sbjct: 62 AIKDTDGK-EVDGRNIKVNIARPM 84
>gi|384915859|ref|ZP_10016064.1| RNA-binding protein, RRM domain (modular protein)
[Methylacidiphilum fumariolicum SolV]
gi|384526721|emb|CCG91935.1| RNA-binding protein, RRM domain (modular protein)
[Methylacidiphilum fumariolicum SolV]
Length = 255
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 47/62 (75%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY++T S L E+FA+ G + + EI+ DR T+R++GFGFV M ++ A++A+ +
Sbjct: 170 KLYVGNLPYNLTDSDLFEIFAKVGPIKNVEIIRDRRTNRTKGFGFVEMADLDSARKAVTI 229
Query: 174 FD 175
+
Sbjct: 230 LN 231
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 72 FDGFQVTEDSQDEPETEQEEEE--EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSL 129
DG + +S P +Q E++ ++ S R+YVGNL +++ S+L
Sbjct: 140 LDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSAL 199
Query: 130 AEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189
A +F E G+V A ++YDR + RSRGFGFVT G+ +E ++A+ DG+ DG I + +
Sbjct: 200 ANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGT-DMDGRQIRVTV 258
Query: 190 IE 191
E
Sbjct: 259 AE 260
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 97 AVEEEEEPKVAAS-DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
AV + E +VA E R++VGNLP+S+ S+ LA +F +AG+V E++YD++T RSRG
Sbjct: 57 AVSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRG 116
Query: 156 FGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
FGFVTM +VEE +EA+ +G V DG + +
Sbjct: 117 FGFVTMSTVEEVEEAVERLNGYV-LDGRALKV 147
>gi|226532108|ref|NP_001142375.1| uncharacterized protein LOC100274547 [Zea mays]
gi|194708524|gb|ACF88346.1| unknown [Zea mays]
Length = 163
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS EE
Sbjct: 76 DSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNN 135
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DG + DG I + + E
Sbjct: 136 AISNLDG-IDLDGRQIRVTVAE 156
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 143 EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
E+VYDR+T RSRGFGFVTM S EEA A+ F+G
Sbjct: 3 EVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNG 36
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +L+VGNLP+++ + L E+F AG V I+ DR T SRGFGFVTMG+VEEA++
Sbjct: 111 EGTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKG 170
Query: 171 IRLFD 175
+ LF+
Sbjct: 171 VELFN 175
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P A S ++YVGNLP+ +SL ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 197 ERPSQAGS-STNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTY 255
Query: 162 GSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
S E +AI DG+ DG + + + E
Sbjct: 256 SSESEVNDAIAALDGT-DMDGRPLRVNIAE 284
>gi|406959178|gb|EKD86596.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+LP+++ + LAE+FA+AG V SA++V DR T RSRGFGFV M + EEA+ A++
Sbjct: 1 MFVGSLPWAVDDAKLAELFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNL 60
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ +G I + + P
Sbjct: 61 NGT-DVEGRKIVVNIARP 77
>gi|413921822|gb|AFW61754.1| hypothetical protein ZEAMMB73_478558 [Zea mays]
Length = 131
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 45/65 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V A++VYDR T RSRGFGFV+M S EE +AI
Sbjct: 46 AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAI 105
Query: 172 RLFDG 176
DG
Sbjct: 106 SALDG 110
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 44/65 (67%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ S L ++F+E G V +A +VYDR T RSRGFGFVTM S EE +AI
Sbjct: 204 AFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAI 263
Query: 172 RLFDG 176
DG
Sbjct: 264 SALDG 268
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 80/170 (47%), Gaps = 42/170 (24%)
Query: 27 IPTNHLPSLFKTKSPKPLKLEKAQN-PSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEP 85
+PT LP L + PL L ++ P A AS D + + D+
Sbjct: 25 LPTVSLPLLPSSTRAAPLLLCASRRLPPA------------PLVASSDAVETNIEWVDDD 72
Query: 86 ETE--------------------QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMT 125
E E E E E AVE EE KV YVGNLPY +
Sbjct: 73 EEEAGEAFDEEGGDVEEEVLASGDEGEGEYAAVEPPEEAKV---------YVGNLPYDIE 123
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
S LA++F +AG V AE++Y++ T +SRGFGFVTM ++EEA +AI +F+
Sbjct: 124 SEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMSTIEEADKAIEMFN 173
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 36/186 (19%)
Query: 33 PSLFKTKSPKP-----LKLEKAQNP------------SALHLSLLSLSYFRQFSASFDGF 75
PSLF +K+ P LK K Q P S H S L L++ Q S D
Sbjct: 23 PSLFSSKTRYPILSNSLKTLKLQLPCSNSSPFSPSLLSTTHRSPL-LTFVAQTS---DWA 78
Query: 76 QVTED------SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAA---RLYVGNLPYSMTS 126
Q E+ ++ EP E+ +E E EE V AS E + +++VGNLP+ + S
Sbjct: 79 QQEEEGGAAWENEGEPTWANEDSDETEGGEE-----VVASAEPSEDLKIFVGNLPWDVES 133
Query: 127 SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186
+LA +F EAG+V AE++Y++ T++SRGFGFV M + E+ ++A+ F G DG +
Sbjct: 134 ENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSG-YELDGRVLT 192
Query: 187 IVLIEP 192
+ P
Sbjct: 193 VNKATP 198
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+S+ ++ L E+F E G V +A IV DR T RSRGFGFVTM S + AI
Sbjct: 223 VYVGNLPWSVDAARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
Query: 175 DGSVSADGICIAIVLIE 191
DG S DG I + + E
Sbjct: 283 DGQ-SLDGRTIRVSVAE 298
>gi|110739563|dbj|BAF01690.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
Length = 84
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 43/62 (69%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI
Sbjct: 1 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 60
Query: 175 DG 176
DG
Sbjct: 61 DG 62
>gi|337278094|ref|YP_004617565.1| RNA-binding protein [Ramlibacter tataouinensis TTB310]
gi|334729170|gb|AEG91546.1| Candidate RNA-binding protein [Ramlibacter tataouinensis TTB310]
Length = 95
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS S + + F++ GTV SA++V DR T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFGDSEMQQAFSQFGTVGSAKVVMDRDTGRSKGFGFVEMGSAAEAQSAIQG 63
Query: 174 FDG 176
G
Sbjct: 64 MHG 66
>gi|365088445|ref|ZP_09327889.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363417101|gb|EHL24188.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 111
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++++YVGNLPYS+T +SL F+E G V+SA+++ DR T RS+GFGFV M + E A+ AI
Sbjct: 2 SSKIYVGNLPYSVTDASLQSNFSEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAI 61
Query: 172 RLFDGSVSADGICIAIVLIEP 192
G +S DG I + L P
Sbjct: 62 SGLHG-MSVDGRTIVVNLARP 81
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
gi|195649373|gb|ACG44154.1| ribonucleoprotein A [Zea mays]
gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A [Zea mays]
Length = 268
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 62/93 (66%), Gaps = 8/93 (8%)
Query: 84 EPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
E +TE E+E E+ EE E +L+VGNLP+S+ S+ LA +F +AG+V E
Sbjct: 58 EYKTEGAEQEGEDGSEE--------FSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVE 109
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
+VYDR+T RSRGFGFVTM S EEA+ A+ F+G
Sbjct: 110 VVYDRMTGRSRGFGFVTMSSAEEAEAAVEQFNG 142
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D A ++YVGNL + + +S+L +F+E G V A+++YDR + RSRGFGFVT GS +E
Sbjct: 181 DSANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNN 240
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI DG + DG I + E
Sbjct: 241 AISNLDG-IDLDGRQIRVTAAE 261
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+P + T+ LA++F E G V AE++YD+ T RSR F FVTM +VE+A+ AI
Sbjct: 74 RLYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQAAIEK 133
Query: 174 FDGS 177
+G+
Sbjct: 134 MNGT 137
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T+ +L + FAE G V A++ T +S G+GFV+ S + +
Sbjct: 169 DSPYKVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEA 228
Query: 170 AIRLFDGSV 178
AI F+ V
Sbjct: 229 AISAFNNVV 237
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +L+VGNLP+++ + L E+F AG V I+ DR T SRGFGFVTMG+VEEA++
Sbjct: 111 EWTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKG 170
Query: 171 IRLFD 175
+ LF+
Sbjct: 171 VELFN 175
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P A S ++YVGNLP+ +SL ++F+E G V A +VYDR T RSRGFGFVT
Sbjct: 197 ERPSQAGS-STNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTY 255
Query: 162 GSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
S E +AI DG+ DG + + + E
Sbjct: 256 SSESEVNDAIAALDGT-DMDGRPLRVNIAE 284
>gi|406956570|gb|EKD84644.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+LP+++ + L E+FA+AG V SA++V DR T RSRGFGFV M + EEA+ A++
Sbjct: 1 MFVGSLPWAVDDAKLGEIFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNL 60
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ +G I + + P
Sbjct: 61 NGA-DVEGRKIVVNIARP 77
>gi|388567211|ref|ZP_10153648.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
gi|388265594|gb|EIK91147.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
Length = 97
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++LYVGNLPYS+ SL F+E G VASA+++ DR + RS+GFGFV M S EA+ AI
Sbjct: 2 SSKLYVGNLPYSVNDDSLRHNFSEFGNVASAKVMTDRDSGRSKGFGFVEMASEAEAQAAI 61
Query: 172 RLFDGSVSADGICIAIVLIEP 192
+G S DG I + + P
Sbjct: 62 NGLNGQ-SVDGRQIVVNVSRP 81
>gi|162455692|ref|YP_001618059.1| RNA recognition motif-containing protein [Sorangium cellulosum So
ce56]
gi|161166274|emb|CAN97579.1| RNA-binding region RNP-1 (RNA recognition motif) [Sorangium
cellulosum So ce56]
Length = 139
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
RLYVGNLP+S T +S+ FA++G V IV DR + +SRGFGFVTMG+ E+A++AI
Sbjct: 2 GTRLYVGNLPFSATKASVQAAFAQSGEVTDVHIVTDRESGQSRGFGFVTMGTPEQAQQAI 61
Query: 172 RLFDGSV 178
+G++
Sbjct: 62 ENMNGAM 68
>gi|121595278|ref|YP_987174.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|222111562|ref|YP_002553826.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|120607358|gb|ABM43098.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|221731006|gb|ACM33826.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 102
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL YS+ SL + F++ G+V SA+++ +R T RS+GFGFV MGS EA++AI
Sbjct: 4 RLYVGNLAYSVRDESLHQQFSQFGSVTSAKVMMERDTGRSKGFGFVEMGSDSEAQDAING 63
Query: 174 FDGSVSADGICIAIVLIEPFNCQ-HFGNG 201
+G S DG + + + P + FG G
Sbjct: 64 LNGR-SVDGRALTVNVARPMEARPSFGGG 91
>gi|42407940|dbj|BAD09079.1| nucleic acid-binding protein-like [Oryza sativa Japonica Group]
Length = 131
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 45/65 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R YVGNLP+ + S L ++F+E G V +A +VYDR + RSRGFGFV+M S EE +AI
Sbjct: 46 AFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAI 105
Query: 172 RLFDG 176
DG
Sbjct: 106 SALDG 110
>gi|406944721|gb|EKD76419.1| hypothetical protein ACD_43C00118G0001 [uncultured bacterium]
Length = 84
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VG + + T +L E F +AG V SA+I+ D++T RSRGFGFV M + EEA+ AI+++
Sbjct: 5 LFVGGIAFKSTDDTLREAFMQAGNVVSAKIIMDKMTGRSRGFGFVEMSTPEEAQAAIQMW 64
Query: 175 DGSVSADGICIAIVLIEP 192
DG DG IA+ +P
Sbjct: 65 DGK-ELDGRRIAVKEAQP 81
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 103 EPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E VA SD AAR LYVGN+P ++ S+ LA + E G V AE++YD+ + RSR F FVTM
Sbjct: 59 EAPVATSDVAARRLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRFAFVTM 118
Query: 162 GSVEEAKEAIRLFDGS 177
+VE+A AI +G+
Sbjct: 119 KTVEDANAAIEKLNGT 134
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D ++YVGNL ++T+ +L + F+E G V SA++ T +S GFGFV+ S E+ +
Sbjct: 167 DSPHKVYVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVE 226
Query: 169 EAI 171
AI
Sbjct: 227 AAI 229
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
VAAS ++++GNLP+ + SL E F G V A+IVYDR T RSRGFGFVT+ S +
Sbjct: 92 VAASH--TKVFIGNLPWGVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPK 149
Query: 166 EAKEAIRLFDGSVSADGICIAIVLIE 191
EA EA++ DG+ DG + + L +
Sbjct: 150 EADEAVKSLDGA-DCDGRRLRVKLAD 174
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+R+YVGNL ++ S LA+V +AG +A E +V DR T RSRGFG+VT+ S++ A+ A+
Sbjct: 1 SRIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAV 60
Query: 172 RLFDGSV 178
+ DG +
Sbjct: 61 QKLDGHI 67
>gi|383142223|gb|AFG52471.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNLP+S+ S+ LAE+F +AG V E++YDR T RSRGF FVTM + E+A A+
Sbjct: 18 KVFVGNLPWSVDSAELAELFKDAGDVTMVEVIYDRQTGRSRGFAFVTMATQEDADSAVEK 77
Query: 174 FDG 176
+G
Sbjct: 78 LNG 80
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E P+ AA D+ +++VGNL + + + +L E+F++ G V A +VYDR + RSRGFGFVT
Sbjct: 95 ERAPRPAARDDPNKVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVT 154
Query: 161 MGSVEEAKEAIRLFDGS 177
V E AI DG+
Sbjct: 155 YSDVSEVDAAIDSLDGA 171
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY+GNLP+ S+ LA + E G+V E++YD+ + RSRGF FVTM + E+A+ I
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 174 FDG 176
DG
Sbjct: 61 LDG 63
>gi|302036839|ref|YP_003797161.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|190343253|gb|ACE75641.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|300604903|emb|CBK41236.1| RNA-binding protein [Candidatus Nitrospira defluvii]
Length = 107
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVG LPY+ T S L+ +F+ GTV SA ++ D+ T +SRGFGFV M + EEAK AI
Sbjct: 4 KLYVGGLPYAATESQLSNLFSAHGTVESARVITDKFTGQSRGFGFVEMSTAEEAKAAITA 63
Query: 174 FDGSVSADGICIAIVLIEP 192
+GS DG + + +P
Sbjct: 64 LNGS-DMDGRQLTVNEAKP 81
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV EE P A +S+ A RLYVGN+P ++T+ L ++ E G V AE++YD+ + RS
Sbjct: 60 AVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRS 119
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGS 177
R F FVTM + E+A AI +G+
Sbjct: 120 RRFAFVTMKTAEDANAAIEKLNGT 143
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++ + +L F++ G V SA++ T +S GFGFVT S E+ +
Sbjct: 176 DSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEV 235
Query: 170 AIRLFDGSV 178
AI F+ S+
Sbjct: 236 AISSFNNSL 244
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV EE P A +S+ A RLYVGN+P ++T+ L ++ E G V AE++YD+ + RS
Sbjct: 60 AVAEETAPAAAVDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRS 119
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGS 177
R F FVTM + E+A AI +G+
Sbjct: 120 RRFAFVTMKTAEDANAAIEKLNGT 143
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++ + +L F++ G V SA++ T +S GFGFVT S E+ +
Sbjct: 176 DSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEV 235
Query: 170 AIRLFDGSV 178
AI F+ S+
Sbjct: 236 AISSFNNSL 244
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
+EE +E + + A D +L+VGNLP+++ S+ LA +F AG V E++YD+ T R
Sbjct: 75 QEEGTLEVDGDDSSYAPD--LKLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGR 132
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDG 176
SRGFGFVTM +V E + A + F+G
Sbjct: 133 SRGFGFVTMSTVGEVEAAAQQFNG 156
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D R++V NL + + +L +F E G V A++VYDR + +SRGFGFVT S EE E
Sbjct: 190 DNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNE 249
Query: 170 AIRLFDGSVSADGICIAIVLIE 191
AI+ DG V DG I + E
Sbjct: 250 AIQSLDG-VDLDGRPIRVTQAE 270
>gi|359481379|ref|XP_003632613.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 2 [Vitis
vinifera]
Length = 254
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 104 PKVAAS-DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
P+ A+ + R+YVGNL + + +L +F+E G V A ++YDR T RSRGFGFVT
Sbjct: 160 PRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYN 219
Query: 163 SVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHF 198
S EE AI DG V +G I + + E + F
Sbjct: 220 SAEEVNRAIESLDG-VDLNGRSIRVTMAEARPRRQF 254
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
E++E+ + +E EP + +L+VGNLP+++ S+ LA +F +AG V E
Sbjct: 72 EQDEDVLSDEGEPSFSPD---LKLFVGNLPFNVDSAGLAGLFEQAGNVEMVE 120
>gi|297806641|ref|XP_002871204.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
gi|297317041|gb|EFH47463.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A++L+VG L + T L+E F++ G V A+IV DRV+DRS+GFGFVT SV+EA++A+
Sbjct: 33 ASKLFVGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASVDEAQKAL 92
Query: 172 RLFDGSVSADGICIAIVLIEPFNCQHFGNGR 202
F+G +G I + + Q FG GR
Sbjct: 93 MEFNGQ-QFNGRVIFVDYAKA--KQSFGGGR 120
>gi|347756146|ref|YP_004863709.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
gi|347588663|gb|AEP13192.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
Length = 112
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + TS L + F++AGTV SA++V DR T+RSRGFGFV S E+ AI +
Sbjct: 2 KLYVGNLSFQTTSEDLRDHFSKAGTVESAQVVEDRDTNRSRGFGFVEFTSTEDGNRAIEM 61
Query: 174 FDGS 177
F G+
Sbjct: 62 FHGT 65
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P+ +SD R++VGNL + + + +L +F E G V A+++YDR + RSRGFGFVT S
Sbjct: 187 PRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSS 246
Query: 164 VEEAKEAIRLFDGS 177
+E AIR DG+
Sbjct: 247 ADEVDSAIRTLDGA 260
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E ++EE+ ++ ++ + ++ RL+VG+LP+S+ S+ LAE+F AG V E++YD+
Sbjct: 63 EFDQEEDTFDDGDDTPSYSPNQ--RLFVGSLPFSVDSAQLAEIFENAGDVEMVEVIYDKS 120
Query: 150 TDRSRGFGFVTM 161
T RSRGFGFVTM
Sbjct: 121 TGRSRGFGFVTM 132
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLP++ S+ LAE+ ++ GTV E++YD+++ RSRGF FVTM + E+A+ I
Sbjct: 45 KLYVGNLPWTCDSAQLAEICSDHGTVDVVEVIYDKISGRSRGFAFVTMATPEDAQAVINA 104
Query: 174 FDGS 177
DG+
Sbjct: 105 LDGT 108
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
+ ++++ VE E P+ D+A +L+VGNL + ++L F+E GTV A++V+DR
Sbjct: 121 QSQKDKPRVERSERPR----DDANKLFVGNLSWGCDEAALYSFFSEYGTVVDAKVVFDRD 176
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
+ RSRGFGFVTM S A AI DG+
Sbjct: 177 SGRSRGFGFVTMESAAAANAAIENLDGA 204
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P+ +SD R++VGNL + + + +L +F E G V A+++YDR + RSRGFGFVT S
Sbjct: 187 PRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSS 246
Query: 164 VEEAKEAIRLFDGS 177
+E AIR DG+
Sbjct: 247 ADEVDSAIRTLDGA 260
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E ++EE+ ++ ++ + ++ RL+VGNLP+S+ S+ LAE+F AG V E++YD+
Sbjct: 63 EFDQEEDTFDDGDDTPSYSPNQ--RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKS 120
Query: 150 TDRSRGFGFVTM 161
T RSRGFGFVTM
Sbjct: 121 TGRSRGFGFVTM 132
>gi|326512018|dbj|BAJ95990.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 830
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A +YV NLPY + + L F AG V ++++YDR RSRGFG+VTM +V+EA++A
Sbjct: 567 EGATVYVRNLPYHLDNEGLKLNFQHAGVVLFSKVIYDREIGRSRGFGYVTMNTVQEAEKA 626
Query: 171 IRLFDGS 177
+R++ GS
Sbjct: 627 VRIYHGS 633
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAI 171
R++V NLP + +S L E+F + G V A ++Y+R SRGFGFVTM + EE+ +AI
Sbjct: 665 RIFVCNLPSQVDNSRLEELFNKHGQVVDARVIYERREGASCSRGFGFVTMATDEESYKAI 724
Query: 172 RLFDGSV 178
R + V
Sbjct: 725 RALNKQV 731
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
VAAS ++++GNLP+ + SL E F G V +IVYDR T RSRGFGFVT+ S +
Sbjct: 92 VAASH--TKVFIGNLPWGVDDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPK 149
Query: 166 EAKEAIRLFDGSVSADGICIAIVLIE 191
EA EA++ DG+ DG + + L +
Sbjct: 150 EADEAVKSLDGA-DCDGRRLRVKLAD 174
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+R+YVGNL ++ S LA+V +AG +A E +V DR T RSRGFG+VT+ S++ A+ A+
Sbjct: 1 SRIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAV 60
Query: 172 RLFDGSV 178
+ DG +
Sbjct: 61 QKLDGHI 67
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNL +S S++LAE+F AG V E++YD++T RSRGFGFVTM S EE + A +
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 174 FDG 176
F+G
Sbjct: 148 FNG 150
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 66 RQFSA-SFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSM 124
+QF+ DG + +S PE + E + + D + R+YVGNL + +
Sbjct: 146 QQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGV 205
Query: 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC 184
+L +F+E G V A++VYDR + RSRGFGFVT S EE AI DG V +G
Sbjct: 206 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG-VDLNGRA 264
Query: 185 IAI 187
I +
Sbjct: 265 IRV 267
>gi|383142217|gb|AFG52468.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNLP+S+ S+ LAE+F + G V E++YDR T RSRGF FVTM + E+A A+
Sbjct: 18 KVFVGNLPWSVDSAKLAELFKDPGDVTMVEVIYDRQTGRSRGFAFVTMATQEDADSAVEK 77
Query: 174 FDG 176
+G
Sbjct: 78 LNG 80
>gi|406886422|gb|EKD33455.1| hypothetical protein ACD_76C00026G0004 [uncultured bacterium]
Length = 83
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 46/63 (73%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGN+ + T S L+++FAE G V SA+IV D++T RSRGFGFV M + E A+ AI+
Sbjct: 4 KLFVGNISWDATDSDLSKLFAEVGEVVSAQIVMDKLTGRSRGFGFVEMATDELAEAAIKA 63
Query: 174 FDG 176
DG
Sbjct: 64 LDG 66
>gi|383760540|ref|YP_005439526.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
gi|381381210|dbj|BAL98027.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
Length = 161
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL YS+ SL + FA+ GTV SA+++ DR T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLAYSVRDDSLQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|374812290|ref|ZP_09716027.1| RNP-1 like RNA-binding protein [Treponema primitia ZAS-1]
Length = 99
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNL Y+ T L +F+E G+VAS++I++DR T S+GFGF+ MG+ EEA AI
Sbjct: 2 AKKLYVGNLSYNTTEDGLRNLFSEFGSVASSKIIFDRETGNSKGFGFIEMGTDEEASAAI 61
Query: 172 -----RLFDG 176
R FDG
Sbjct: 62 AGTNGREFDG 71
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 51 NPSALHLSLLSLSYF-----RQFSASFDGFQVTED-SQDEPETEQEEEEEEEAVEEEEEP 104
+P + L+ LS S + Q +AS+ + + D +Q+E EEEE E E
Sbjct: 39 SPVRIMLATLSRSNYVIEPLSQVAASWRVPRASADVAQEEAPATAPAVEEEELASGETEG 98
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ +LY GNLPY++ S+ LA + E GT E++Y R T RSRGF FVTM S+
Sbjct: 99 EADQVPVNTKLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFVTMSSI 158
Query: 165 EEAKEAIRLFDGS 177
E+ + I DGS
Sbjct: 159 EDCETVIENLDGS 171
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++GNL +S+TS SL + F E G V A ++YD T +SRG+GFV + EE + A++
Sbjct: 199 KLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQS 258
Query: 174 FDGSVSADGICIAIVLIE 191
+G V +G + + L E
Sbjct: 259 LNG-VELEGRALRVSLAE 275
>gi|328952775|ref|YP_004370109.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109]
gi|328453099|gb|AEB08928.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109]
Length = 97
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + MT L +F+EAG V SA+I+ DR T + RGFGFV M + E ++AI +
Sbjct: 4 KLYVGNLSFEMTEEQLGTLFSEAGPVTSAKIITDRQTGQPRGFGFVEMETKSEGRKAISM 63
Query: 174 FDGSVSADGICIAIVLIEP 192
+G + DG +A+ +P
Sbjct: 64 LNGR-TVDGRPLAVNEAKP 81
>gi|383142219|gb|AFG52469.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNLP+S+ S+ LAE+F + G V E++YDR T RSRGF FVTM + E+A A+
Sbjct: 18 KVFVGNLPWSVDSAELAELFKDPGDVTMVEVIYDRQTGRSRGFAFVTMATQEDADSAVEK 77
Query: 174 FDG 176
+G
Sbjct: 78 LNG 80
>gi|168054234|ref|XP_001779537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669018|gb|EDQ55613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%)
Query: 76 QVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAE 135
Q E+ ++P E + + + D ++++GNL +S + +L +VF+E
Sbjct: 77 QPRENRDNKPRFGNNERGDRRSDRPPRQGSDRVLDNTNKMFIGNLSWSCDADALVQVFSE 136
Query: 136 AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
G+V A++VYDR T +SRGFGFVTM + E A++ DG+
Sbjct: 137 YGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQNLDGA 178
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLP++ S+ LAE+ + +V + ++VYD+ + RSRGF FVTM + E A+ I
Sbjct: 1 KLYVGNLPWTCDSAQLAEICGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSVIDR 60
Query: 174 FDGS 177
DGS
Sbjct: 61 LDGS 64
>gi|319762031|ref|YP_004125968.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330826150|ref|YP_004389453.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
gi|317116592|gb|ADU99080.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329311522|gb|AEB85937.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
Length = 102
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL YS+ SL + F++ G V SA+++ +R T RS+GFGFV M S EA+EAI
Sbjct: 4 RLYVGNLAYSVRDESLVQQFSQFGAVTSAKVMMERDTGRSKGFGFVEMASGAEAQEAING 63
Query: 174 FDGSVSADGICIAIVLIEPFNCQ-HFGNG 201
G S DG + + + P + FG G
Sbjct: 64 LHGK-SVDGRALTVNVARPMEARPSFGGG 91
>gi|53804863|ref|YP_113486.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
gi|53758624|gb|AAU92915.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
Length = 95
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++LYVGNL Y + + L FA GTV SA++V DR T RSRGFGFV MGS +EA+ AI
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAI 61
Query: 172 RLFDG 176
+G
Sbjct: 62 AGLNG 66
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
E++ VA +++YVGNLP++ S+ LAE+ ++ GTV E++YD+++ RSRGF F
Sbjct: 9 EDDVAAPVAEEQLGSKVYVGNLPWTCDSAQLAEICSQHGTVDVVEVIYDKLSGRSRGFAF 68
Query: 159 VTMGSVEEAKEAIRLFDGS 177
VTM S ++A+ I DGS
Sbjct: 69 VTMASHDDAQALINALDGS 87
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 7/96 (7%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
+D+P E+ E A + P+ D+ +L+VGN+P+ +++ +F+ G+V
Sbjct: 103 KDKPRFEKSEARPPTA---DRRPR----DDPNKLFVGNIPWGCDEAAMTSLFSPYGSVVD 155
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
A+IVYDR + RSRGFGFVTM V +A+ A+ DG+
Sbjct: 156 AKIVYDRDSGRSRGFGFVTMEKVGDAQTAMENLDGT 191
>gi|59802519|gb|AAX07503.1| unknown [Gemmata sp. Wa1-1]
Length = 122
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 7/91 (7%)
Query: 95 EEAVEEEEEPKVAASDEAA-------RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
AV + + AA D AA +LYVGNL + +T S L ++F G+V SA+++ D
Sbjct: 15 RRAVPRGKLIQAAAGDRAAGEFVVGKKLYVGNLSWGVTDSQLQDMFTPYGSVVSAQVIMD 74
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
R T RS+GFGFV MG+ +EA+ AI G V
Sbjct: 75 RDTGRSKGFGFVEMGTDQEAQAAITGMHGQV 105
>gi|121596409|ref|YP_988305.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608489|gb|ABM44229.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 149
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F++ G V SA+++ +R T RS+GFGFV MGS EA+EAI
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAING 63
Query: 174 FDGSVSADGICIAIVLIEPFNCQ 196
+G S G I + P +
Sbjct: 64 MNGQ-SLGGRSIVVNEARPMEAR 85
>gi|297823333|ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
gi|297325388|gb|EFH55808.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E+E EEE +EE+ + S+ +L+V NLP+SM+ + ++E+F + GTV + EI+
Sbjct: 70 EKETSAEEETSQEEKTEETQKSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFN-----------CQ 196
+ ++RGF FVTM S EEA+ AI FD S G I++ F
Sbjct: 130 K-DGKNRGFAFVTMASGEEAQAAIDKFDTS-QVSGRIISVNFARRFKKPTPKPPNDLPSP 187
Query: 197 HFGNGRCLVFLSYIILDVHSIH 218
G+ R +++S + S H
Sbjct: 188 PPGDTRHKLYVSNLAWKARSTH 209
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D +LYV NL + S+ L E+F + SA +V+ RS G+GFV+ + EEA+
Sbjct: 191 DTRHKLYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPEGRSSGYGFVSFATREEAE 250
Query: 169 EAIRLFDG 176
+AI DG
Sbjct: 251 DAIAKLDG 258
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 44/66 (66%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A RLYVGNLP+SM L ++F E GTV A +V DR + RSRGF FV + + EEA EA
Sbjct: 202 DANRLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANEA 261
Query: 171 IRLFDG 176
+ DG
Sbjct: 262 MANLDG 267
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 96 EAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
A+ E + + ++ + +LYVGNL +S L + F++ G V +AE+V DR + RSRG
Sbjct: 73 RAMAETFQDQATSTAASTKLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRG 132
Query: 156 FGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192
F FVTM S + A++A R DG+ A G I + +P
Sbjct: 133 FAFVTMASPDAAEKARRGLDGTELA-GRAIRVNFPQP 168
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGN+P ++T+ LA +FA+ GTV AE+++D+ T RSR FGFVTM + EEA AI
Sbjct: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EP+ D ++YVGNL S+T+ L F+E G V SA + T +S+G+GFVT
Sbjct: 159 EPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFS 218
Query: 163 SVEEAKEAIRLFDGS 177
S EE + A+ F+ +
Sbjct: 219 SEEEVQAAVSTFNNA 233
>gi|222112647|ref|YP_002554911.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732091|gb|ACM34911.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 155
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F++ G V SA+++ +R T RS+GFGFV MGS EA+EAI
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAING 63
Query: 174 FDGSVSADGICIAIVLIEPFNCQ 196
+G S G I + P +
Sbjct: 64 MNGQ-SLGGRSIVVNEARPMEAR 85
>gi|125563035|gb|EAZ08415.1| hypothetical protein OsI_30679 [Oryza sativa Indica Group]
Length = 226
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGN+P ++T+ LA +FA+ GTV AE+++D+ T RSR FGFVTM + EEA AI
Sbjct: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
>gi|15239958|ref|NP_196239.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|9759319|dbj|BAB09686.1| unnamed protein product [Arabidopsis thaliana]
gi|17065276|gb|AAL32792.1| Unknown protein [Arabidopsis thaliana]
gi|20260002|gb|AAM13348.1| unknown protein [Arabidopsis thaliana]
gi|21593170|gb|AAM65119.1| unknown [Arabidopsis thaliana]
gi|332003601|gb|AED90984.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 146
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A++L++G L + T L+E F++ G V A+IV DRV+DRS+GFGFVT S +EA++A+
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 172 RLFDG 176
F+G
Sbjct: 93 MEFNG 97
>gi|406831764|ref|ZP_11091358.1| RNP-1 like RNA-binding protein [Schlesneria paludicola DSM 18645]
Length = 122
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +LYVGNL Y+ T+ +L ++FA+ G V SA+IV DR T RS+GFGFV MG A+ AI
Sbjct: 2 STKLYVGNLSYNATNQTLEQMFAQHGEVRSAQIVTDRDTGRSKGFGFVEMGDSRSAEAAI 61
Query: 172 RLFDGSVSADGICIAIVLIEP 192
+G DG + + P
Sbjct: 62 SALNGQ-EVDGRALTVNEARP 81
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVGN+P ++T+ L +FA+ GTV A+++YD+ + RSR FGFVTM SVEEA AI
Sbjct: 70 KLYVGNIPRTVTNDELRAMFADHGTVLRADVMYDKYSGRSRRFGFVTMSSVEEANAAI 127
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EP+ A D ++YVGNL ++T+ L F+E G V SA + T +S+G+GFVT
Sbjct: 158 EPEPAFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFS 217
Query: 163 SVEEAKEAIRLFDGS 177
S EE + A+ F+ +
Sbjct: 218 SEEEVEAAVSTFNNT 232
>gi|196230311|ref|ZP_03129174.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196225908|gb|EDY20415.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 185
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL Y T S L+E+F GTV SAEIV + ++S+GFGFVTM +V+EAK A+
Sbjct: 99 KLYVGNLSYDATESDLSELFNGVGTVKSAEIVSHKYNEKSKGFGFVTMTTVDEAKRAV 156
>gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein [Vicia faba var. minor]
Length = 289
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 46/78 (58%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+E E VA D +LY GNLPYS+ S+ LA + E G+ E++YDR T +SRGF F
Sbjct: 103 KENGEEIVAEEDTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAF 162
Query: 159 VTMGSVEEAKEAIRLFDG 176
TM VE+ K I DG
Sbjct: 163 ATMTCVEDCKAVIENLDG 180
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++GNL + +TS L E F E GTV A ++YD T SRG+GFV+ + E + A+ +
Sbjct: 209 KLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTI 268
Query: 174 FD 175
+
Sbjct: 269 MN 270
>gi|406950086|gb|EKD80418.1| cp31AHv protein [uncultured bacterium]
Length = 122
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +L+VG+L ++ T SL F++AGTV+SA ++ DR T RS+GFGFV M S EEA++A+
Sbjct: 2 ATKLFVGSLAWATTDDSLQAFFSQAGTVSSARVITDRATGRSKGFGFVEMSSDEEAQKAV 61
Query: 172 RLFDGSVSADGICIAIVLIEPF 193
+G DG I + P
Sbjct: 62 AELNGK-ELDGRAIVVNEARPM 82
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 44/62 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y MT S L EVF+ G V A+IV D+ T+RS+GFGFV M S E+AK+AI
Sbjct: 4 IYVGNLSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGT 63
Query: 175 DG 176
+G
Sbjct: 64 NG 65
>gi|406993247|gb|EKE12437.1| Glycine-rich RNA-binding protein GRP1A [uncultured bacterium]
Length = 86
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
++L+VGNL + +T L +FA AG+V A ++ DR+T RSRGFGFVTMGS EA+ A+
Sbjct: 3 SKLFVGNLAWEVTVEDLKALFAGAGSVVDAAVITDRMTGRSRGFGFVTMGSDAEAQTAVE 62
Query: 173 LFD 175
F+
Sbjct: 63 KFN 65
>gi|121607153|ref|YP_994960.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
gi|121551793|gb|ABM55942.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
Length = 175
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G VASA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|406926747|gb|EKD62896.1| RNA-binding protein [uncultured bacterium]
Length = 134
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL Y++TS L ++FAEAGTV A ++ + T RS+GFGFV M + E AK AI
Sbjct: 4 KLYVGNLSYTVTSDELRKLFAEAGTVVDAVVISFKDTGRSKGFGFVEMETEEAAKAAIEK 63
Query: 174 FDGS 177
F+GS
Sbjct: 64 FNGS 67
>gi|395005503|ref|ZP_10389380.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
gi|394316556|gb|EJE53277.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
Length = 110
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ S L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 24/121 (19%)
Query: 82 QDEPETEQEEEEEE--EAVEEEEEPKVAASD----------------------EAARLYV 117
Q+E EQ E+E EAV+EEE+ + A + A +LY
Sbjct: 78 QEEAAAEQPREDEPIGEAVQEEEQDQGGAVEASSGSVDDYGDGAGTGAAEAASSATKLYF 137
Query: 118 GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
GNLPY+ S+ LA + + T E++YDR T RSRGF FVTM ++E+ + I+ DG+
Sbjct: 138 GNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKNLDGT 197
Query: 178 V 178
+
Sbjct: 198 L 198
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++T L + F + G V A ++YD T RSRG+GFV + EE +AI
Sbjct: 225 KLFVGNLSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 284
Query: 174 FDGS 177
+G+
Sbjct: 285 LNGT 288
>gi|428224588|ref|YP_007108685.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
gi|427984489|gb|AFY65633.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
Length = 150
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + L FAEAG + + +++ DR T++ RGFGF+T+ S EEA E I
Sbjct: 4 RLYVGNLPKDLDRQELEAAFAEAGELLAIKVITDRKTNKCRGFGFITVKSDEEADEVIEK 63
Query: 174 FDG 176
F+G
Sbjct: 64 FNG 66
>gi|241766569|ref|ZP_04764426.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363173|gb|EER58764.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 116
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ S L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|430741539|ref|YP_007200668.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430013259|gb|AGA24973.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 119
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNL Y++ S L +F++ GTV SA+I+ DR T+RS+GFGFV M + +A+ AI
Sbjct: 2 AKKLYVGNLTYNVNESDLEALFSQFGTVQSAQIIVDRDTNRSKGFGFVEMDTDAQAQAAI 61
Query: 172 RLFDGSVSADGICIAIVLIEP 192
+ +G DG + + +P
Sbjct: 62 QGLNGH-DHDGRNLTVNEAKP 81
>gi|337281472|ref|YP_004620944.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
gi|334732549|gb|AEG94925.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 159
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 46/63 (73%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ S L + F++ G V+SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFSQFGAVSSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|411117469|ref|ZP_11389956.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410713572|gb|EKQ71073.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 151
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP ++ L FAEAG S +I+ DR T++ RGFGFVT+ + EEA I
Sbjct: 4 RLYVGNLPEDLSRQELEAAFAEAGDSISTKIITDRKTNKCRGFGFVTVKTDEEADAFIEK 63
Query: 174 FDGSV 178
F+GS+
Sbjct: 64 FNGSI 68
>gi|418528345|ref|ZP_13094295.1| RNA-binding protein RNP-2 [Comamonas testosteroni ATCC 11996]
gi|371454721|gb|EHN67723.1| RNA-binding protein RNP-2 [Comamonas testosteroni ATCC 11996]
Length = 130
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F+E GTV SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDQDLQDSFSEFGTVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 174 FDG 176
G
Sbjct: 64 LHG 66
>gi|299531904|ref|ZP_07045304.1| RNA-binding protein RNP-2 [Comamonas testosteroni S44]
gi|298720079|gb|EFI61036.1| RNA-binding protein RNP-2 [Comamonas testosteroni S44]
Length = 128
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F+E GTV SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDQDLQDSFSEFGTVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 174 FDG 176
G
Sbjct: 64 LHG 66
>gi|264680851|ref|YP_003280761.1| RNA-binding protein RNP-2 [Comamonas testosteroni CNB-2]
gi|262211367|gb|ACY35465.1| RNA-binding protein RNP-2 [Comamonas testosteroni CNB-2]
Length = 128
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F+E GTV SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDQDLQDSFSEFGTVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 174 FDG 176
G
Sbjct: 64 LHG 66
>gi|260221788|emb|CBA30701.1| Glycine-rich RNA-binding protein GRP1A [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 149
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F++ G+V+SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 10 KLYVGNLPYSFRDEDLQQAFSQHGSVSSAKVMMERDTGRSKGFGFVEMGSDAEAQTAISA 69
Query: 174 FDG 176
+G
Sbjct: 70 MNG 72
>gi|347819855|ref|ZP_08873289.1| RNP-1 like RNA-binding protein [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 128
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F++ G+V SA+++ +R T RS+GFGFV MGS EA+ AIR
Sbjct: 22 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIRG 81
Query: 174 FDG 176
G
Sbjct: 82 VHG 84
>gi|399108266|gb|AFP20557.1| RNA-binding protein [uncultured bacterium]
Length = 114
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL Y S+ L ++FA GTV S +++ DR T +S+GFGFV MGS +EA+ A+
Sbjct: 4 KLYVGNLNYRTNSAELEQLFAAYGTVKSVQVISDRHTGQSKGFGFVEMGSAQEAQAAMNA 63
Query: 174 FDG 176
+G
Sbjct: 64 LNG 66
>gi|120613407|ref|YP_973085.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591871|gb|ABM35311.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 123
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+LYVGNLPYS L + F++ G+VASA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDDDLQQTFSQYGSVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|168704267|ref|ZP_02736544.1| RNA-binding region RNP-1 [Gemmata obscuriglobus UQM 2246]
Length = 137
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL + +T + L E+F G V SA+++ DR T RS+GFGFV MGS +EA+ AI
Sbjct: 2 GKKLYVGNLSWGVTDAMLQEMFTPYGAVVSAQVIMDRDTGRSKGFGFVEMGSDQEAQAAI 61
Query: 172 RLFDGSV 178
G V
Sbjct: 62 SGMHGQV 68
>gi|45544646|ref|NP_956311.1| cold inducible RNA binding protein isoform 2 [Danio rerio]
gi|28856196|gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|182891172|gb|AAI64022.1| Cirbp protein [Danio rerio]
Length = 184
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L++G L Y T SL E F++ GT+A +++ DR TDRSRGFGFVT + E+AK
Sbjct: 2 SDEG-KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G DG I +
Sbjct: 61 DAMAAMNGK-QVDGRMIRV 78
>gi|410446610|ref|ZP_11300713.1| hypothetical protein B273_0331 [SAR86 cluster bacterium SAR86E]
gi|409980282|gb|EKO37033.1| hypothetical protein B273_0331 [SAR86 cluster bacterium SAR86E]
Length = 79
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 39/47 (82%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+YVGNLP+S+ +SL ++FAE GT+ SA+++ DR T+RSRGFGFV M
Sbjct: 3 IYVGNLPWSIDDASLEQIFAEHGTITSAKVITDRQTNRSRGFGFVEM 49
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPY+ S+ LA + + T E++YDR T RSRGF FVTM ++E+ ++ I+
Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 205
Query: 174 FDGSV 178
DGS+
Sbjct: 206 LDGSL 210
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 100 EEEEPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
++ +PK+ E +L+VGNL +++TS L E+F + G V A ++YD T RSRG+GF
Sbjct: 222 DKPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGF 281
Query: 159 VTMGSVEEAKEAIRLFDGS 177
V + EE EA+ +G+
Sbjct: 282 VCYSTKEEMDEALSSLNGT 300
>gi|302038618|ref|YP_003798940.1| putative RNA-binding protein RbpA [Candidatus Nitrospira defluvii]
gi|300606682|emb|CBK43015.1| putative RNA-binding protein RbpA [Candidatus Nitrospira defluvii]
Length = 108
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++YVG LPYS T L+++FA G V SA I+ D+ T +SRGFGFV M S +EA++AI
Sbjct: 2 GSKIYVGGLPYSATEQQLSDLFAVHGAVESARIITDKFTGQSRGFGFVEMASSDEAQKAI 61
Query: 172 RLFDGS 177
+G+
Sbjct: 62 SALNGT 67
>gi|15226983|ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|3608147|gb|AAC36180.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 308
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E+E +EE +EE+ + S+ +L+V NLP+SM+ + ++E+F + GTV + EI+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFN-----------CQ 196
+ ++RGF FVTM S EEA+ AI FD + G I++ F
Sbjct: 130 K-DGKNRGFAFVTMASGEEAQAAIDKFD-TFQVSGRIISVSFARRFKKPTPKSPNDLPSP 187
Query: 197 HFGNGRCLVFLSYIILDVHSIH 218
G+ R +++S + S H
Sbjct: 188 APGDTRHKLYVSNLAWKARSTH 209
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMG 162
P A D +LYV NL + S+ L E+F A SA +V+ RS G+GFV+
Sbjct: 185 PSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFA 244
Query: 163 SVEEAKEAIRLFDG 176
+ EEA+ AI +G
Sbjct: 245 TREEAENAITKLNG 258
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPY+ S+ LA + + T E++YDR T RSRGF FVTM ++E+ ++ I+
Sbjct: 148 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 207
Query: 174 FDGSV 178
DGS+
Sbjct: 208 LDGSL 212
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 100 EEEEPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
++ +PK+ E +L+VGNL +++TS L E+F + G V A ++YD T RSRG+GF
Sbjct: 224 DKPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGF 283
Query: 159 VTMGSVEEAKEAIRLFDGS 177
V + EE EA+ +G+
Sbjct: 284 VCYSTKEEMDEALSSLNGT 302
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +LY GNLPYS+ SS LA + + G E++YDR T +SRGF FVTM S+E+ + I
Sbjct: 101 STKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVI 160
Query: 172 RLFDGS 177
DGS
Sbjct: 161 ENLDGS 166
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+TS L + F E G V A ++YD T +SRG+GFV+ + E + A+
Sbjct: 194 KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALET 253
Query: 174 FDGSVSADGICIAIVLIE 191
+ + +G I + L E
Sbjct: 254 IN-ELELEGRVIRVSLAE 270
>gi|239818248|ref|YP_002947158.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239804825|gb|ACS21892.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 181
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ S L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|196234692|ref|ZP_03133505.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196221240|gb|EDY15797.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 126
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + T L + FAEAGTV ++ D+ T RSRGF FVTM + +EA++AI +
Sbjct: 4 KLYVGNLSFDTTEVDLQDAFAEAGTVQEVALMQDKFTGRSRGFAFVTMATPDEAQKAISI 63
Query: 174 FDGSV 178
F G
Sbjct: 64 FHGKT 68
>gi|89902981|ref|YP_525452.1| RNA-binding region RNP-1 [Rhodoferax ferrireducens T118]
gi|89347718|gb|ABD71921.1| RNA-binding region RNP-1 [Rhodoferax ferrireducens T118]
Length = 140
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY+ L + FA GTV SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYTFRDEDLQQAFAAHGTVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|383142221|gb|AFG52470.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
gi|383142225|gb|AFG52472.1| Pinus taeda anonymous locus CL931Contig1_02 genomic sequence
Length = 85
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNLP+S+ S+ LAE+F +AG V E++YDR T RS GF FVTM E+A A+
Sbjct: 18 KVFVGNLPWSVDSAELAELFKDAGDVTMVEVIYDRQTGRSCGFAFVTMAMQEDADSAVEK 77
Query: 174 FDG 176
+G
Sbjct: 78 LNG 80
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL YS+ L + F E G V SA+++ DR T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEG 63
Query: 174 FDG-SVSADGICI 185
+G S+S I +
Sbjct: 64 MNGQSLSGRAIVV 76
>gi|327398778|ref|YP_004339647.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
gi|327181407|gb|AEA33588.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
Length = 86
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLPYS T L E+F E G V+S +I+ DR T RSRGFGFV M S ++A++AI
Sbjct: 5 LYVGNLPYSTTEDELKELFGEYGEVSSTKIITDRETGRSRGFGFVEM-SDDDAQKAIDSL 63
Query: 175 DG 176
+G
Sbjct: 64 NG 65
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPY++ S+ LA + + GT E++YDR T RSRGF FVTM +VE+ I
Sbjct: 114 KLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIEN 173
Query: 174 FDGS 177
DGS
Sbjct: 174 LDGS 177
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+TS SL E F E G + A ++YD T RSRG+GFV + E + A+
Sbjct: 205 KLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVS 264
Query: 174 FDGSVSADGICIAIVLIE 191
+G V +G + + L +
Sbjct: 265 LNG-VELEGRAMRVSLAQ 281
>gi|357128483|ref|XP_003565902.1| PREDICTED: uncharacterized protein LOC100828680 [Brachypodium
distachyon]
Length = 357
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
Q+E +EE E+EE AA LYVGNL + + LA++F G V +EI+YD
Sbjct: 185 RQQECDEEYTSEDEEYYGPAAE---GTLYVGNLRHHIDDEYLAQLFENVGIVEFSEILYD 241
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLF 174
R T +SRG+G+VTM +VEEA+ A+ F
Sbjct: 242 RETGQSRGYGYVTMSTVEEAEMAVNTF 268
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD--RSRGFGFVTMGSVEEAKEAI 171
R++VGNLP + S L +F+E G V ++ Y V RSR FGFVTM + EE+ +AI
Sbjct: 293 RIFVGNLPCEVDGSMLNLLFSEHGQVVDTKVAYGYVKGVWRSRRFGFVTMATREESDDAI 352
Query: 172 RL 173
L
Sbjct: 353 YL 354
>gi|351731832|ref|ZP_08949523.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 177
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ S L + F + G V SA+++ +R T RS+GFGFV MG+ EA+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|320103893|ref|YP_004179484.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
gi|319751175|gb|ADV62935.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
Length = 104
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY T L +VF+E G V SA+I+ DR T+RSRGFGF+ M + A+EAI
Sbjct: 2 KLYVGNLPYDTTEDQLIDVFSEYGEVVSAQIMIDRETNRSRGFGFIEMRT--GAQEAIEA 59
Query: 174 FDG 176
+G
Sbjct: 60 LNG 62
>gi|337281471|ref|YP_004620943.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
gi|334732548|gb|AEG94924.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 128
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS S + + F++ GTV+SA+++ +R T RS+GFGFV M S EA+ AI
Sbjct: 4 KLYVGNLPYSYRDSDMEQAFSQFGTVSSAKVMMERDTGRSKGFGFVEMSSPAEAQAAIEG 63
Query: 174 FDG-SVSADGICI 185
+G + G+ +
Sbjct: 64 MNGQQIGGRGLVV 76
>gi|328953013|ref|YP_004370347.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109]
gi|328453337|gb|AEB09166.1| RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109]
Length = 109
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLP+ M+ S L ++F+EAG V SA+I+ DR T RGFGFV M + E +AI +
Sbjct: 4 KLYVGNLPHQMSESELQDLFSEAGYVVSAKIITDRQTGLPRGFGFVEMETKAEGAKAISM 63
Query: 174 FDG 176
+G
Sbjct: 64 ING 66
>gi|221069837|ref|ZP_03545942.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220714860|gb|EED70228.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 132
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY+ L + F+E GTV SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYTFRDQDLQDSFSEFGTVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 174 FDG 176
G
Sbjct: 64 LHG 66
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A RLYVGN+P ++T+ LA++ E G V AE++YD+ + RSR F FVTM +VE+A I
Sbjct: 69 ARRLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVI 128
Query: 172 RLFDGS 177
+G+
Sbjct: 129 EKLNGT 134
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 76 QVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAE 135
VTE P+ + EE E + D ++YVGNL ++T+ +L F+E
Sbjct: 144 NVTEKPLSTPDLPLLQAEESEFI-----------DSPHKVYVGNLAKTVTTDTLKNFFSE 192
Query: 136 AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
G V SA++ T +S G+GFVT S E+ + AI F+ S+
Sbjct: 193 KGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSL 235
>gi|326319545|ref|YP_004237217.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376381|gb|ADX48650.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 172
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ + L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|116747535|ref|YP_844222.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB]
gi|116696599|gb|ABK15787.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans MPOB]
Length = 122
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + +S L E+F++ GTV SA +V DR + RSRGFGFV M + EE ++AI
Sbjct: 4 KLYVGNLSFQTSSEQLRELFSQVGTVESATVVEDRESGRSRGFGFVEMSTKEEGQKAIAE 63
Query: 174 FDG 176
+G
Sbjct: 64 LNG 66
>gi|430745770|ref|YP_007204899.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430017490|gb|AGA29204.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 133
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL Y+++++ L ++F E GTV SA+++ DR T RS+GFGFV M S EA+ AI
Sbjct: 3 GKKLYVGNLAYTVSNTDLEQLFGEFGTVQSAQVIQDRDTGRSKGFGFVEMDSDAEAQAAI 62
>gi|374376206|ref|ZP_09633864.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373233046|gb|EHP52841.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 110
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL +++ L +FA G V SA+IV D+ T+RS+GFGFV M + EEAK AI
Sbjct: 3 IYVGNLSWNLKDQDLQNLFAPYGEVTSAKIVSDKFTNRSKGFGFVEMATDEEAKAAIEAL 62
Query: 175 DGSVSADGICIAIVLIEPFNCQHFGNG 201
+G+ DG I + P + G G
Sbjct: 63 NGT-EVDGRNIVVNESRPKEGGNSGGG 88
>gi|86608306|ref|YP_477068.1| RNA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556848|gb|ABD01805.1| putative RNA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 175
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + +L ++F AG V S +++ DR T + RGFGFVT+ + E+A++ I
Sbjct: 4 RLYVGNLPEEVDRQALEKLFRSAGEVISTKVIRDRKTGKCRGFGFVTVNTEEQAQQYIEK 63
Query: 174 FDGSVSADGICIAIVLIEPFN 194
F+G D + + I L +P +
Sbjct: 64 FNGHSFGD-VNLRIELAQPRD 83
>gi|365091633|ref|ZP_09328988.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415944|gb|EHL23068.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 129
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F++ G+V SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 174 FDGS 177
G+
Sbjct: 64 VHGT 67
>gi|351731831|ref|ZP_08949522.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 131
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F++ G+V SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 174 FDGS 177
G+
Sbjct: 64 VHGT 67
>gi|160901477|ref|YP_001567059.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333917515|ref|YP_004491247.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|160367061|gb|ABX38674.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333747715|gb|AEF92892.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 124
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY+ S L + F+E G V SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYTFRDSDLEQAFSEFGAVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 174 FDG 176
G
Sbjct: 64 LHG 66
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++Y+GNLP+S S+ LA + E G+V E++YD+ T RSRGF F TM SVE+A +
Sbjct: 110 GTKVYLGNLPFSCDSAELAGIIQEHGSVEMVEVIYDQNTGRSRGFAFATMSSVEDANALV 169
Query: 172 RLFDGS 177
DGS
Sbjct: 170 ENLDGS 175
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E+ +D R+Y+GNL + + L EVF+E G + A+IV+DR T RSRGFGF+T
Sbjct: 205 EQRNQTNNDGQHRVYIGNLSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITF 264
Query: 162 GSVEEAKEAIRLFDG 176
+ EA+ A+ +G
Sbjct: 265 STQSEAEAAVASLNG 279
>gi|357439793|ref|XP_003590174.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355479222|gb|AES60425.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 387
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
VA D +LY GNLPYS+ S+ LA + E G+ E++YDR T +SRGF FVTM VE
Sbjct: 208 VAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVE 267
Query: 166 EAKEAIRLFDG 176
+ I+ DG
Sbjct: 268 DCNAVIQNLDG 278
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SL + F E GTV A +++D T +SRG+GFV+ + E A+ +
Sbjct: 307 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 366
Query: 174 FDGSVSADGICIAIVLIE 191
D +V +G + + L +
Sbjct: 367 MD-NVELEGRTLRVSLAQ 383
>gi|120613408|ref|YP_973086.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591872|gb|ABM35312.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 176
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ + L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|407941455|ref|YP_006857096.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899249|gb|AFU48458.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 188
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|388499174|gb|AFK37653.1| unknown [Lotus japonicus]
Length = 302
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R++VGNL + + +++L +F E G V A+++YDR + RSRGFGFVT S +E AIR
Sbjct: 219 RVHVGNLAWGVDNAALESLFREQGRVVDAKVIYDRESGRSRGFGFVTFSSPDEVNSAIRS 278
Query: 174 FDGS 177
DG+
Sbjct: 279 LDGA 282
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E ++EE+ ++ E + A D +++VGNLP+S+ S+ LAE+F +AG V E++YD+
Sbjct: 66 EFDQEEDTFSDDAETRSFAPDH--KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKT 123
Query: 150 TDRSRGFGFVTM 161
T SRGF FVTM
Sbjct: 124 TGNSRGFAFVTM 135
>gi|260221864|emb|CBA30852.1| Putative RNA-binding protein rbpB [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 124
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++++YVGNLPYS+T SL F+E G V SA+++ DR T RS+GF FV M + A+ AI
Sbjct: 28 SSKIYVGNLPYSVTDDSLQSNFSEFGEVTSAKVMMDRDTGRSKGFAFVEMSTPAFAQAAI 87
Query: 172 RLFDGSVSADGICIAIVLIEP 192
+G S DG I + L P
Sbjct: 88 DGLNGQ-SVDGRSIVVNLARP 107
>gi|193215305|ref|YP_001996504.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
gi|193088782|gb|ACF14057.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
Length = 104
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++T + L +VF+E G VASA I+ D+ + +SRGFGFV M + +A++AI
Sbjct: 3 IYVGNLSYTLTENELRDVFSEYGEVASANIIVDKYSGKSRGFGFVDMPNEADAEQAIEAL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+GS DG + + P
Sbjct: 63 NGS-QLDGRSLKVNEARP 79
>gi|428211720|ref|YP_007084864.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
gi|428000101|gb|AFY80944.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
Length = 181
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLY+GNLP + L +VFAEAG + +++ DR T + RGFGFVT+ + E+A E I
Sbjct: 4 RLYIGNLPKEVDRKELQDVFAEAGDSVTTKVITDRKTGKCRGFGFVTVKNDEQADEFIEK 63
Query: 174 FDGSVSAD 181
F+G + D
Sbjct: 64 FNGYMFQD 71
>gi|365091634|ref|ZP_09328989.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415945|gb|EHL23069.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 192
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAISG 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|241766570|ref|ZP_04764427.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363174|gb|EER58765.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 125
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F++ G+V SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 174 FDG 176
G
Sbjct: 64 VHG 66
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLPYS+T SL E+F + G V+S ++V D+++ RS+GF FV M + EE + AI
Sbjct: 3 IYVGNLPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIEKL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G DG I + +P
Sbjct: 63 NGH-ELDGRTIVVNKAKP 79
>gi|375108277|ref|ZP_09754538.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374669008|gb|EHR73793.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 167
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL YS+ SL F++ GTV SA+++ DR T RS+GFGFV MG+ EA+ AI
Sbjct: 4 KLYVGNLAYSVRDESLQAAFSQFGTVTSAKVMMDRETGRSKGFGFVEMGTGAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645571|gb|AEE79092.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 363
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 11/92 (11%)
Query: 99 EEEEEPKVAASDEAA-----------RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E EE+ A D++A +L+VGNL +++ S+ LA++F AG V E++YD
Sbjct: 74 EVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYD 133
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179
+VT RSRGFGFVTM + E + A + F+G VS
Sbjct: 134 KVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVS 165
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL + + +L +F E G V A ++YDR + RS+GFGFVT+ S +E ++AI
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 174 FDGSVSADGICIAI 187
+G+ DG I +
Sbjct: 339 LNGA-DLDGRQIRV 351
>gi|398810631|ref|ZP_10569445.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398082488|gb|EJL73237.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 179
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|319796634|ref|YP_004158274.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315599097|gb|ADU40163.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 189
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|395005502|ref|ZP_10389379.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394316555|gb|EJE53276.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 130
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F++ G+V SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 174 FDG 176
G
Sbjct: 64 VHG 66
>gi|407941454|ref|YP_006857095.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899248|gb|AFU48457.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 125
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F++ G+V SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 174 FDG 176
G
Sbjct: 64 VHG 66
>gi|375144786|ref|YP_005007227.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361058832|gb|AEV97823.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 102
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL + + LA++F++ G V+SA+++ DR T RSRGFGFV M S EEA++AI+
Sbjct: 3 LYVSNLGFQVNDDDLAKLFSQYGQVSSAKVIMDRETGRSRGFGFVEMSSDEEARKAIKEL 62
Query: 175 DG 176
+G
Sbjct: 63 EG 64
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G+V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|217073820|gb|ACJ85270.1| unknown [Medicago truncatula]
Length = 285
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
VA D +LY GNLPYS+ S+ LA + E G+ E++YDR T +SRGF FVTM VE
Sbjct: 106 VAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVE 165
Query: 166 EAKEAIRLFDG 176
+ I+ DG
Sbjct: 166 DCNAVIQNLDG 176
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SL + F E GTV A +++D T +SRG+GFV+ + E A+ +
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 174 FD 175
D
Sbjct: 265 MD 266
>gi|388493590|gb|AFK34861.1| unknown [Medicago truncatula]
Length = 285
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
VA D +LY GNLPYS+ S+ LA + E G+ E++YDR T +SRGF FVTM VE
Sbjct: 106 VAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVE 165
Query: 166 EAKEAIRLFDG 176
+ I+ DG
Sbjct: 166 DCNAVIQNLDG 176
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++T S + F E GTV A +++D T + RG+GFV+ + E A+ +
Sbjct: 205 KLFVGNLAWTVTFESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSEMDTALAI 264
Query: 174 FDGSVSADGICIAIVLIE 191
D +V +G + + L +
Sbjct: 265 MD-NVELEGRTLRVSLAQ 281
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR- 172
+LYVGN+P ++T+ L+ +FA GTV AE++YD+ + RSR FGFVTM + EE AI
Sbjct: 70 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 129
Query: 173 LFDGSVSADGICIAI 187
L D V I + +
Sbjct: 130 LNDTEVGGRKIKVNV 144
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
E EP D ++YVGNL +T+ L F+E G V SA + T +S+G+GFVT
Sbjct: 158 ESEPSFV--DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVT 215
Query: 161 MGSVEEAKEAIRLFDGS 177
S EE + A+ F+ +
Sbjct: 216 FSSEEEVEAAVSTFNNT 232
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+P ++T+ LA++ E G V AE++YD+ + RSR F FVTM +VE+A I
Sbjct: 71 RLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEK 130
Query: 174 FDGS 177
+G+
Sbjct: 131 LNGT 134
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T+ +L F+E G V SA++ T +S G+GFVT S E+ +
Sbjct: 167 DSPHKVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEA 226
Query: 170 AIRLFDGSV 178
AI F+ S+
Sbjct: 227 AISSFNNSL 235
>gi|319765041|ref|YP_004128978.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330827233|ref|YP_004390536.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
gi|317119602|gb|ADV02091.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329312605|gb|AEB87020.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
Length = 116
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+LYVGNLPYS L + F++ G+V SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDQDLEQTFSQYGSVQSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|223940412|ref|ZP_03632265.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223890907|gb|EEF57415.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 118
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +L+VGNLP+S T + L + F+ AGTV + I+ DR T RSRGF F+ MGS EA A+
Sbjct: 2 ATKLFVGNLPFSTTENDLQDHFSGAGTVIAVNIMQDRATGRSRGFAFIEMGSQAEADAAV 61
Query: 172 RLFDG 176
+ G
Sbjct: 62 AQYHG 66
>gi|113478077|ref|YP_724138.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110169125|gb|ABG53665.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 102
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L+EVFAE GTV ++ DR T R RGFGFV M S E ++AI
Sbjct: 3 IYVGNLSYDVTQDDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSENEEQKAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|347819854|ref|ZP_08873288.1| RNP-1 like RNA-binding protein [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 168
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAITG 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|296121841|ref|YP_003629619.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM 3776]
gi|296014181|gb|ADG67420.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM 3776]
Length = 146
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG-SVEEAKEA 170
A LYVGNLPY T+ L E F+E GTV A++V DR T RSRGFGFV M E A EA
Sbjct: 2 AKNLYVGNLPYGTTADDLREAFSEHGTVTRAQVVSDRETGRSRGFGFVEMSDGAERAVEA 61
Query: 171 I 171
+
Sbjct: 62 M 62
>gi|302338833|ref|YP_003804039.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
gi|301636018|gb|ADK81445.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
Length = 93
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNL YS T L ++F + G V SA+IV DR T RSRGFGFV M + A+ AI
Sbjct: 2 AKKLYVGNLSYSSTEPGLEDLFGQYGQVVSAKIVLDRETKRSRGFGFVEMEQDDAAEAAI 61
Query: 172 RLFDG 176
DG
Sbjct: 62 SALDG 66
>gi|42522915|ref|NP_968295.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|426403373|ref|YP_007022344.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|39574111|emb|CAE79288.1| putative RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|425860041|gb|AFY01077.1| putative RNA-binding protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 116
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL YS+ SLA+ FAE G V SA IV DR T RS+GF FV M + +EA AI
Sbjct: 4 KIYVGNLSYSLDDQSLADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATAIAK 63
Query: 174 FDG 176
+G
Sbjct: 64 LNG 66
>gi|297816490|ref|XP_002876128.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
gi|297321966|gb|EFH52387.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV E EE A +S+ A R+Y+GN+P ++T+ L ++ E G V +++YD+ + RS
Sbjct: 57 AVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRS 116
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
R FGF TM SVE+A + +G+ + +G I + + E
Sbjct: 117 RRFGFATMKSVEDANAVVEKLNGN-TVEGREIKVNITE 153
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T L +F+E G V SA++ T +S GFGFVT S E+ +
Sbjct: 175 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 234
Query: 170 AIRLFDGS 177
AI + S
Sbjct: 235 AILALNNS 242
>gi|344924967|ref|ZP_08778428.1| RNA-binding region RNP-1 [Candidatus Odyssella thessalonicensis
L13]
Length = 94
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NLPYS+ +LA++F + G V SA+++ D+++ RS+GFGFV M S ++A A+
Sbjct: 4 KLYVSNLPYSVNDQTLAQLFGDHGAVVSAKVITDKMSGRSKGFGFVEMESEQQANSAMEK 63
Query: 174 FDGSVSADGICIAIVLIEP 192
+G +G + + + P
Sbjct: 64 LNGQ-DLNGRRMNVAIARP 81
>gi|87308451|ref|ZP_01090592.1| RNA-binding protein [Blastopirellula marina DSM 3645]
gi|87289008|gb|EAQ80901.1| RNA-binding protein [Blastopirellula marina DSM 3645]
Length = 149
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM---GSVEEAK 168
+LYVGNLPY SS L +F + G VASA ++ DR T RSRGFGFV M G A
Sbjct: 2 GKKLYVGNLPYGYGSSELENLFGQYGQVASASVINDRETGRSRGFGFVEMASDGDALAAT 61
Query: 169 EAIRLFD 175
EA+ FD
Sbjct: 62 EALNGFD 68
>gi|398802241|ref|ZP_10561457.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398100710|gb|EJL90943.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 148
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|383767221|ref|YP_005446202.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
gi|381387489|dbj|BAM04305.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
Length = 112
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL + T+ L +F+ G+V+ A ++ DR T RSRGFGFVTMG E+AK+AI
Sbjct: 2 KMYVGNLAWRTTTEDLEALFSNYGSVSDAIVLTDRETGRSRGFGFVTMGD-EDAKKAIDA 60
Query: 174 FDGS 177
DGS
Sbjct: 61 LDGS 64
>gi|121607152|ref|YP_994959.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
gi|121551792|gb|ABM55941.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
Length = 122
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS L + F++ G+V SA+++ +R T RS+GFGFV MGS +A+ AI+
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAQAQAAIQG 63
Query: 174 FDG 176
G
Sbjct: 64 VHG 66
>gi|298528161|ref|ZP_07015565.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511813|gb|EFI35715.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP+S T + L ++FAE G V+SA+I+ DR T RSRGFGFV M + A EAI
Sbjct: 4 LYVGNLPWSTTEAQLRDLFAEYGEVSSAKIIEDRETGRSRGFGFVEMEN--GADEAIESL 61
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ G I + + +P
Sbjct: 62 NGT-DFGGRNIKVNVAKP 78
>gi|147859670|emb|CAN83111.1| hypothetical protein VITISV_026573 [Vitis vinifera]
Length = 355
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 42/71 (59%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S +LY GNLPYS S+ LA + G+ E++YDR T RSRGF FVTM SVE+
Sbjct: 60 AESPVNTKLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVED 119
Query: 167 AKEAIRLFDGS 177
I DGS
Sbjct: 120 CNAVIENLDGS 130
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 100 EEEEPKVAASDEA-ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
++ +PK+ E +L+VGNL +S+TS SL +VF E G V A ++YD
Sbjct: 143 DKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYD 191
>gi|319765042|ref|YP_004128979.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330827234|ref|YP_004390537.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
gi|317119603|gb|ADV02092.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329312606|gb|AEB87021.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
Length = 144
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G V SA+++ +R T RS+GFGFV MGS +A+ AI
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFGQFGVVTSAKVMMERDTGRSKGFGFVEMGSDADAQAAING 63
Query: 174 FDGSVSADGICIAIVLIEPF 193
+G S G I + P
Sbjct: 64 MNGQ-SLGGRSIVVNEARPM 82
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV E EE A +S+ A R+Y+GN+P ++T+ L ++ E G V +++YD+ + RS
Sbjct: 57 AVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRS 116
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
R FGF TM SVE+A + +G+ + +G I + + E
Sbjct: 117 RRFGFATMKSVEDANAVVEKLNGN-TVEGREIKVNITE 153
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T L +F+E G V SA++ T +S GFGFVT S E+ +
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 170 AIRLFDGSV 178
AI + S+
Sbjct: 234 AIVALNNSL 242
>gi|113478076|ref|YP_724137.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110169124|gb|ABG53664.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 97
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 40/61 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L+EVFAE GTV ++ DR T R RGFGFV M S EE ++AI
Sbjct: 3 IYVGNLSYDVTQEDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSEEEEQKAIDAL 62
Query: 175 D 175
D
Sbjct: 63 D 63
>gi|326319544|ref|YP_004237216.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376380|gb|ADX48649.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 124
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+LYVGNLPYS L + F++ G V SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGNVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|442771473|gb|AGC72159.1| RNA-binding protein [uncultured bacterium A1Q1_fos_560]
Length = 98
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++YVG LPYS T L+++FA G V SA I+ D+ T +SRGFGFV M EA+ AI
Sbjct: 2 GSKIYVGGLPYSTTEQQLSDLFAVHGAVTSARIITDKFTGQSRGFGFVEMSGDSEAQAAI 61
Query: 172 RLFDGS 177
+G+
Sbjct: 62 NALNGT 67
>gi|283781639|ref|YP_003372394.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
gi|283440092|gb|ADB18534.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
Length = 156
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP++ +SS L +F G VA+AE++ DR T RSRGFGFV M + + + A+
Sbjct: 4 RIYVGNLPWTYSSSDLEALFKPFGDVAAAEVIMDRETGRSRGFGFVQMANDADCEPAVNG 63
Query: 174 FDGS 177
+G+
Sbjct: 64 LNGT 67
>gi|298528142|ref|ZP_07015546.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511794|gb|EFI35696.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP+S T + L + FAE G V+SA+I+ DR T RSRGFGFV M + A EAI
Sbjct: 4 LYVGNLPWSTTEAQLRDSFAEFGEVSSAKIIEDRETGRSRGFGFVEMEN--GADEAIEAL 61
Query: 175 DGSVSADGICIAIVLIEPFNCQHF 198
+G G I + + +P F
Sbjct: 62 NGK-DYGGRSIKVNVAKPKRESRF 84
>gi|297837519|ref|XP_002886641.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
gi|297332482|gb|EFH62900.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SLAE F E G V A +VYD T RSRG+GFV S E + A+
Sbjct: 172 KLFVGNLSWTVTSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALES 231
Query: 174 FDG 176
DG
Sbjct: 232 LDG 234
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI 144
PET + EEEE ++ +P A + +LY GNLPY++ S++LA++ + E+
Sbjct: 57 PETINVKLEEEE---KDLDPPAAIN---TKLYFGNLPYNVDSATLAQIIQDFANPELVEV 110
Query: 145 VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
+Y+R T +SRGF FVTM +VE+ I DG+
Sbjct: 111 LYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGT 143
>gi|255633638|gb|ACU17178.1| unknown [Glycine max]
Length = 196
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +L++G + YS SL E F++ G V A I+ DR T RSRGFGF+T SVEEA AI
Sbjct: 41 STKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAI 100
Query: 172 RLFDG 176
+ DG
Sbjct: 101 QALDG 105
>gi|392397594|ref|YP_006434195.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
gi|390528672|gb|AFM04402.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
Length = 97
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NLPYS++ L VF+E G V S +I+ DR T RSRGFGFV M S E+ + AI
Sbjct: 3 LYVSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIEEL 62
Query: 175 DG 176
+G
Sbjct: 63 NG 64
>gi|374373120|ref|ZP_09630780.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373234093|gb|EHP53886.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 88
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + + L E+F+ G V+SA+++ DR T +SRGFGFV MGSV +A A++
Sbjct: 3 MYVSNLGFHASDDDLRELFSSFGQVSSAKVIMDRTTGKSRGFGFVEMGSVSDATLAMKEL 62
Query: 175 DGSVSADGICIAI 187
DG DG IA+
Sbjct: 63 DGK-DVDGRRIAV 74
>gi|171913967|ref|ZP_02929437.1| RNP-1 like RNA-binding protein [Verrucomicrobium spinosum DSM 4136]
Length = 238
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL Y + S L E+F +G V +AE+V + T RS+GF FVTM SV+EAK+A+
Sbjct: 128 RLYVGNLSYDASESDLFELFNGSGRVKNAEVVVNNRTQRSKGFAFVTMMSVDEAKKAVDD 187
Query: 174 FDG 176
+G
Sbjct: 188 LNG 190
>gi|254416097|ref|ZP_05029852.1| RNA-binding protein, putative [Coleofasciculus chthonoplastes PCC
7420]
gi|196177030|gb|EDX72039.1| RNA-binding protein, putative [Coleofasciculus chthonoplastes PCC
7420]
Length = 95
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL YS+TS L+EVFAE GTV + DR T R RGFGFV MG+ +E AI
Sbjct: 3 IYVGNLDYSVTSEDLSEVFAEYGTVKRVHLPTDRETGRLRGFGFVEMGTEDEEASAISEL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|288940058|ref|YP_003442298.1| RNP-1 like RNA-binding protein [Allochromatium vinosum DSM 180]
gi|288895430|gb|ADC61266.1| RNP-1 like RNA-binding protein [Allochromatium vinosum DSM 180]
Length = 92
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
R+YVGNLPYSM L +F + G +ASAE++ D+ + +S+GFGFV M + EA AI+
Sbjct: 2 RIYVGNLPYSMNDDELRNIFGQFGELASAEVIKDKFSGQSKGFGFVDMPNNSEADAAIK 60
>gi|365153971|ref|ZP_09350405.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
gi|158605004|gb|EAT99377.3| 31 kDa ribonucleoprotein, (RNA-binding proteinRNP-T) (RNA-binding
protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)
[Campylobacter concisus 13826]
gi|363650683|gb|EHL89770.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
Length = 81
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNL Y T + L E FA+ G V A+IV DR TDRS+GFGFV M E ++AI
Sbjct: 3 IYVGNLSYRTTEAELKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAI 59
>gi|406964974|gb|EKD90666.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 118
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G +P+S+T+ L E+F + GTV+SA+I+ D+ T++S+GF FV M + EA+ AI+
Sbjct: 3 KLFIGGIPFSLTNEKLKELFEKYGTVSSAQIIMDKYTNQSKGFAFVEMPNDTEAQTAIKE 62
Query: 174 FDGSVSADGICIAIVLIEP 192
DG +G I + + P
Sbjct: 63 LDG-FGLEGRKIGVSVARP 80
>gi|388566786|ref|ZP_10153228.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
gi|388265964|gb|EIK91512.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
Length = 133
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY++ L + F+ G V SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYTVRDEDLQQAFSAFGAVNSAKVMMERETGRSKGFGFVEMGSDSEAQSAIQG 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|339501141|ref|YP_004699176.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
gi|338835490|gb|AEJ20668.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
Length = 116
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNL Y+ + SL +F+ G+VASA+I++DR T S+GFGFV M + EEA AI
Sbjct: 23 AKKLYVGNLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEASAAI 82
>gi|298248970|ref|ZP_06972774.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297546974|gb|EFH80841.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 104
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG LPY T L ++F + G V SA ++ DR T RS+GFGFV M S +E + AI
Sbjct: 2 RIYVGGLPYQSTEQDLIQLFEQIGQVTSATVITDRETGRSKGFGFVEMSSDDETRAAIEQ 61
Query: 174 FDGSVSAD 181
+GS D
Sbjct: 62 LNGSTLGD 69
>gi|21672973|ref|NP_661038.1| RNA-binding protein [Chlorobium tepidum TLS]
gi|21646033|gb|AAM71380.1| RNA-binding protein [Chlorobium tepidum TLS]
Length = 90
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNLPYS+T L + F+E G V SA I+ D+ + RS+GFGFV M + EA+EAI
Sbjct: 3 IYIGNLPYSVTDEDLRDKFSEFGQVHSANIITDKFSGRSKGFGFVDMPNESEAREAI 59
>gi|171056877|ref|YP_001789226.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
gi|170774322|gb|ACB32461.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
Length = 157
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL YS+ L E F++ G V SA+++ DR T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLAYSVRDEDLNEAFSQFGAVNSAKVMMDRETGRSKGFGFVEMGSDPEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 LNG 66
>gi|223938363|ref|ZP_03630257.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223892932|gb|EEF59399.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 127
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 47/66 (71%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +LYVGNLP++ T + L ++FA+ G V S +++ D+ + R RGFGFVTM + E A+ A+
Sbjct: 2 STKLYVGNLPFTATENELQDMFAQHGPVTSVDLIMDKFSGRPRGFGFVTMETQEGAQAAV 61
Query: 172 RLFDGS 177
+ +G+
Sbjct: 62 QALNGT 67
>gi|333917516|ref|YP_004491248.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|333747716|gb|AEF92893.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 179
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY + + L + F++ G V SA ++ +R T RS+GFGFV MGS EA+ A++
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQG 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|160901478|ref|YP_001567060.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|160367062|gb|ABX38675.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
Length = 176
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY + + L + F++ G V SA ++ +R T RS+GFGFV MGS EA+ A++
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQG 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|121604834|ref|YP_982163.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120593803|gb|ABM37242.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 132
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY++ L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 174 FDGSVSADGICIAIVLIEPFNCQ 196
+G S G I + P +
Sbjct: 64 MNGQ-SLGGRSITVNEARPMEAR 85
>gi|32400657|dbj|BAC78814.1| RNA-binding protein [Oscillatoria sp. SU1]
Length = 152
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP +T L FA+AG SA+++ DR T + RGFGFVT+ + E+A + I
Sbjct: 4 RLYVGNLPEDLTRQDLEAAFADAGEGVSAKLITDRKTGKCRGFGFVTVKTDEQADQFIEK 63
Query: 174 FDG 176
++G
Sbjct: 64 YNG 66
>gi|387219259|gb|AFJ69338.1| hypothetical protein NGATSA_3013400, partial [Nannochloropsis
gaditana CCMP526]
Length = 290
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEP-KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+D PE +E+ E V P +A+ A ++VGNLP+SM + + E+F+E G V
Sbjct: 157 KDYPEDLKEKVAEN--VRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVV 214
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189
S IV D++ +RS+GFGFV M EE + AI DG DG I + L
Sbjct: 215 SVTIVKDQL-NRSKGFGFVEMADKEEGERAIAALDGR-EMDGRPINVRL 261
>gi|374850838|dbj|BAL53816.1| RNA-binding region RNP-1 [uncultured planctomycete]
Length = 98
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP++ T L E FA GTV A+I+ DR T RSRGFGFV M + A EAI
Sbjct: 5 LYVGNLPFNTTVDELREAFARFGTVTRAQIIVDRDTGRSRGFGFVEM--ADGADEAIAQM 62
Query: 175 DGSV 178
+G++
Sbjct: 63 NGAI 66
>gi|255544262|ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547691|gb|EEF49184.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 256
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+S+ A RLY+GN+P ++ + L ++ E G V AE++YD+ + RSR F FVTM +VE+A
Sbjct: 75 SSEAAKRLYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDA 134
Query: 168 KEAIRLFDGS 177
I +G+
Sbjct: 135 NAVIEKLNGT 144
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++TS L F+E G V SA++ T +S G+GFV+ E+ +
Sbjct: 177 DSPHKVYVGNLAKTVTSEILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEA 236
Query: 170 AIRLFDGSV 178
AI F+ S+
Sbjct: 237 AISSFNNSL 245
>gi|119589931|gb|EAW69525.1| cold inducible RNA binding protein, isoform CRA_d [Homo sapiens]
Length = 311
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
EEE ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFV
Sbjct: 6 REEEQAAMASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 64
Query: 160 TMGSVEEAKEAIRLFDGSVSADGICIAI 187
T ++++AK+A+ +G S DG I +
Sbjct: 65 TFENIDDAKDAMMAMNGK-SVDGRQIRV 91
>gi|116791319|gb|ABK25933.1| unknown [Picea sitchensis]
Length = 221
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++RL++G L Y M SL E F E G V A I++DR T RSRGFGF++ S EEA AI
Sbjct: 39 SSRLFIGGLSYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFISFTSNEEAAAAI 98
Query: 172 RLFDG 176
DG
Sbjct: 99 TGMDG 103
>gi|333999539|ref|YP_004532151.1| RNA-binding protein [Treponema primitia ZAS-2]
gi|333738431|gb|AEF83921.1| RNA-binding protein [Treponema primitia ZAS-2]
Length = 89
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNL Y+ +L +F++ GTV S +I+ DR T S+GFGFV M + EEA+ AI
Sbjct: 2 AKKLYVGNLSYNTYEDNLRTLFSQYGTVESVKIITDRDTGNSKGFGFVEMSTEEEAQAAI 61
Query: 172 RLFDGSVSADGICIAI 187
R + S DG I +
Sbjct: 62 RGTN-STDLDGRSIKV 76
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S +LY GNLPYS S+ LA + G+ E++Y+R T RSRGF FVTM SVE+
Sbjct: 105 AESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVED 164
Query: 167 AKEAIRLFDGS 177
I DGS
Sbjct: 165 CNAVIENLDGS 175
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 100 EEEEPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
++ +PK+ E +L+VGNL +S+TS SL +VF E G V A ++YD T RSRG+GF
Sbjct: 188 DKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGF 247
Query: 159 VTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
V + E A+ +G V +G I I L +
Sbjct: 248 VCYSTKAEMDTALESLNG-VELEGRAIRISLAQ 279
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S +LY GNLPYS S+ LA + G+ E++Y+R T RSRGF FVTM SVE+
Sbjct: 105 AESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVED 164
Query: 167 AKEAIRLFDGS 177
I DGS
Sbjct: 165 CNAVIENLDGS 175
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 100 EEEEPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
++ +PK+ E +L+VGNL +S+TS SL +VF E G V A ++YD T RSRG+GF
Sbjct: 188 DKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGF 247
Query: 159 VTMGSVEEAKEAIRLFDGSVSADGICIAI 187
V + E A+ +G V +G I +
Sbjct: 248 VCYSTKAEMDTALESLNG-VELEGRAIRV 275
>gi|428779944|ref|YP_007171730.1| RRM domain-containing RNA-binding protein [Dactylococcopsis salina
PCC 8305]
gi|428694223|gb|AFZ50373.1| RRM domain-containing RNA-binding protein [Dactylococcopsis salina
PCC 8305]
Length = 95
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL YS+T L+EVFAE GTV + DR T R RGFGFV M S E AI
Sbjct: 3 IYVGNLDYSVTQDDLSEVFAEYGTVKRVHLPTDRETGRMRGFGFVEMASETEESNAISEL 62
Query: 175 DGSVSADGICIAIVLIEPF-NCQHFGNGR 202
DG+ G + + P N FG GR
Sbjct: 63 DGAEWM-GRELKVNPARPRENKSSFGGGR 90
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
gi|297323759|gb|EFH54180.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
Length = 339
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL + + +L +F E G V A ++YDR + RS+GFGFVT+ S +E ++AI
Sbjct: 255 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 314
Query: 174 FDGSVSADGICIAI 187
+G+ DG I +
Sbjct: 315 LNGA-DLDGRQIRV 327
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 11/89 (12%)
Query: 99 EEEEEPKVAASDEAA-----------RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E EE+ A D++A +L+VGNL +++ S+ LA++F AG V E++YD
Sbjct: 74 EVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYD 133
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
+VT RSRGFGFVTM + E + A + F+G
Sbjct: 134 KVTGRSRGFGFVTMSTAAEVEAAAQQFNG 162
>gi|119589927|gb|EAW69521.1| cold inducible RNA binding protein, isoform CRA_b [Homo sapiens]
Length = 184
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
EEE ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT
Sbjct: 7 EEEQAAMASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 65
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAI 187
++++AK+A+ +G S DG I +
Sbjct: 66 FENIDDAKDAMMAMNGK-SVDGRQIRV 91
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE FA+ G +A +++ D+ T RSRGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DALEGMNGK-SVDGRTIRV 78
>gi|424862992|ref|ZP_18286905.1| 31 kDa ribonucleoprotein, ic [SAR86 cluster bacterium SAR86A]
gi|400757613|gb|EJP71824.1| 31 kDa ribonucleoprotein, ic [SAR86 cluster bacterium SAR86A]
Length = 81
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGN+ + +T L VFAE GTV SA+I+ DR T RSRGFGFV M EA AI
Sbjct: 3 IYVGNISWGLTDQDLENVFAEHGTVTSAKIITDRATGRSRGFGFVEMSDGAEA--AIEAL 60
Query: 175 DGS 177
+G+
Sbjct: 61 NGT 63
>gi|298244419|ref|ZP_06968225.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297551900|gb|EFH85765.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 106
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG LPY T L ++F + G V A ++ DR T RS+GFGFV M S +EA+ AI
Sbjct: 2 RIYVGGLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARAAIEQ 61
Query: 174 FDGSVSAD 181
+GS D
Sbjct: 62 LNGSTLGD 69
>gi|189345649|ref|YP_001942178.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
gi|189339796|gb|ACD89199.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
Length = 90
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNLPYS+T L +VF++ G V SA I+ D+ + RS+GFGFV M EA+EAI
Sbjct: 3 IYIGNLPYSVTEDDLRDVFSQFGQVDSANIITDKFSGRSKGFGFVDMPIDGEAREAI 59
>gi|427740185|ref|YP_007059729.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC 7116]
gi|427375226|gb|AFY59182.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC 7116]
Length = 95
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L++VFAE G+V ++ DR T RSRGFGFV M S +E AI+
Sbjct: 3 IYVGNLSYDVTQEDLSKVFAEYGSVKRVQLPTDRETGRSRGFGFVEMQSEDEESSAIQAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|428313428|ref|YP_007124405.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428255040|gb|AFZ20999.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 93
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +TS L+ VFAE GTV +I DR T RSRGFGFV M + E AI+
Sbjct: 3 IYVGNLSYQVTSEDLSSVFAEYGTVKRVQIPTDRETGRSRGFGFVEMETEAEEDAAIQEL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|425434353|ref|ZP_18814822.1| putative RNA-binding protein rbpA [Microcystis aeruginosa PCC 9432]
gi|425450092|ref|ZP_18829924.1| putative RNA-binding protein rbpA [Microcystis aeruginosa PCC 7941]
gi|389676152|emb|CCH94759.1| putative RNA-binding protein rbpA [Microcystis aeruginosa PCC 9432]
gi|389769241|emb|CCI05872.1| putative RNA-binding protein rbpA [Microcystis aeruginosa PCC 7941]
Length = 100
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T++ L EVFAE GTV+ + DR T + RGFGFV M S EE +AI
Sbjct: 3 IYVGNLVYDVTTNDLQEVFAEYGTVSRVYLPVDRETGKMRGFGFVEMSSDEEEAKAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|186511018|ref|NP_850692.2| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein cp29; Flags: Precursor
gi|6729497|emb|CAB67653.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|18655393|gb|AAL76152.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|21593426|gb|AAM65393.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|332645568|gb|AEE79089.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645569|gb|AEE79090.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645570|gb|AEE79091.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 342
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL + + +L +F E G V A ++YDR + RS+GFGFVT+ S +E ++AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 174 FDGSVSADGICIAI 187
+G+ DG I +
Sbjct: 318 LNGA-DLDGRQIRV 330
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 11/89 (12%)
Query: 99 EEEEEPKVAASDEAA-----------RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E EE+ A D++A +L+VGNL +++ S+ LA++F AG V E++YD
Sbjct: 74 EVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYD 133
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
+VT RSRGFGFVTM + E + A + F+G
Sbjct: 134 KVTGRSRGFGFVTMSTAAEVEAAAQQFNG 162
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL + + +L +F E G V A ++YDR + RS+GFGFVT+ S +E ++AI
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 174 FDGSVSADGICIAI 187
+G+ DG I +
Sbjct: 310 LNGA-DLDGRQIRV 322
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 11/89 (12%)
Query: 99 EEEEEPKVAASDEAA-----------RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E EE+ A D++A +L+VGNL +++ S+ LA++F AG V E++YD
Sbjct: 74 EVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYD 133
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
+VT RSRGFGFVTM + E + A + F+G
Sbjct: 134 KVTGRSRGFGFVTMSTAAEVEAAAQQFNG 162
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 95 EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
EEA EE ++ ++ +LY+ NLP+S++ + E+F + GTV+ EI+ + RSR
Sbjct: 81 EEASEENQD-----VNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK-NGRSR 134
Query: 155 GFGFVTMGSVEEAKEAIRLFD 175
GF FVTM S +EA+ AI+ FD
Sbjct: 135 GFAFVTMASPDEAQAAIQKFD 155
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NL + + S++L + F+E +A +V+D RS G+GFV+ + EEA+ A+
Sbjct: 191 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 250
Query: 174 FDG 176
+G
Sbjct: 251 LEG 253
>gi|194334049|ref|YP_002015909.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
gi|194311867|gb|ACF46262.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
Length = 90
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNL Y +T L E F E G V+SA I+ D+ T RS+GFGFV M S ++A EAI
Sbjct: 3 IYIGNLDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAI 59
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 95 EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
EEA EE ++ ++ +LY+ NLP+S++ + E+F + GTV+ EI+ + RSR
Sbjct: 75 EEASEENQD-----VNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK-NGRSR 128
Query: 155 GFGFVTMGSVEEAKEAIRLFD 175
GF FVTM S +EA+ AI+ FD
Sbjct: 129 GFAFVTMASPDEAQAAIQKFD 149
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NL + + S++L + F+E +A +V+D RS G+GFV+ + EEA+ A+
Sbjct: 185 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 244
Query: 174 FDG 176
+G
Sbjct: 245 LEG 247
>gi|385808713|ref|YP_005845109.1| RRM domain RNA-binding protein [Ignavibacterium album JCM 16511]
gi|383800761|gb|AFH47841.1| RRM domain RNA-binding protein [Ignavibacterium album JCM 16511]
Length = 83
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +L+VG+LP+S+ +L E F E G V SA+++ DR T RSRGFGFV M + +AK AI
Sbjct: 2 STKLFVGSLPWSVDDETLRETFEEHGNVVSAKVIKDRETGRSRGFGFVEMENSADAKSAI 61
Query: 172 RLFDGS 177
+ S
Sbjct: 62 EALNDS 67
>gi|345870533|ref|ZP_08822485.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
gi|343921736|gb|EGV32449.1| RNP-1 like RNA-binding protein [Thiorhodococcus drewsii AZ1]
Length = 92
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
R+YVGNLPYS+T L +F+E G +A+AE++ D+ + +S+GFGFV M S +A AI+
Sbjct: 2 RIYVGNLPYSVTDDDLRTIFSEFGELAAAEVIKDKFSGQSKGFGFVDMPSNSDADAAIK 60
>gi|183222473|ref|YP_001840469.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
gi|189912511|ref|YP_001964066.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167777187|gb|ABZ95488.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167780895|gb|ABZ99193.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
Length = 87
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +YVGNL Y MT L+E+F G V SA+I+ D+ + RS+GFGF+ M +EA AI
Sbjct: 2 SVNIYVGNLSYDMTEGKLSELFGAHGAVTSAKIITDQYSGRSKGFGFIEMKDGKEADNAI 61
Query: 172 RLFDG 176
+ +G
Sbjct: 62 KDLNG 66
>gi|194332974|ref|YP_002014834.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
gi|194310792|gb|ACF45187.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
Length = 90
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNLPY++T L E F E G V SA I+ D+ + RS+GFGFV M + E+A++AI
Sbjct: 3 IYIGNLPYNITEDDLREAFNEFGQVDSANIIIDKFSGRSKGFGFVEMPNDEDAEKAI 59
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL + + +L +F E G V A ++YDR + RS+GFGFVT+ S +E ++AI
Sbjct: 242 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 301
Query: 174 FDGSVSADGICIAI 187
+G+ DG I +
Sbjct: 302 LNGA-DLDGRQIRV 314
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 11/89 (12%)
Query: 99 EEEEEPKVAASDEAA-----------RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E EE+ A D++A +L+VGNL +++ S+ LA++F AG V E++YD
Sbjct: 66 EVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYD 125
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
+VT RSRGFGFVTM + E + A + F+G
Sbjct: 126 KVTGRSRGFGFVTMSTAAEVEAAAQQFNG 154
>gi|332529248|ref|ZP_08405212.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332041471|gb|EGI77833.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 110
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++LYVGNL YS+ L + F G V SA+++ DR + RS+GFGFV MGS ++A+ AI
Sbjct: 2 SSKLYVGNLSYSVRDDDLQQQFGAFGDVQSAKVMMDRDSGRSKGFGFVEMGSADQAEAAI 61
Query: 172 RLFDG 176
R G
Sbjct: 62 RGLHG 66
>gi|222112646|ref|YP_002554910.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732090|gb|ACM34910.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 121
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+LYVGNLPY+ L + F++ G V SA+++ +R T RS+GFGFV MGS EA+ AI+
Sbjct: 4 KLYVGNLPYTFRDQDLEQTFSQFGAVQSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
>gi|300868683|ref|ZP_07113294.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
gi|300333244|emb|CBN58486.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
Length = 182
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + L VFAE G SA+++ DR T + RGFGFVT+ + E+A + I
Sbjct: 4 RLYVGNLPKELERQELQAVFAEEGESVSAKVITDRKTGKCRGFGFVTVATDEQADQVIEK 63
Query: 174 FDG 176
++G
Sbjct: 64 YNG 66
>gi|443654715|ref|ZP_21131411.1| RNA recognition motiffamily protein [Microcystis aeruginosa
DIANCHI905]
gi|159026915|emb|CAO89166.1| rbpF/A2 [Microcystis aeruginosa PCC 7806]
gi|443333703|gb|ELS48246.1| RNA recognition motiffamily protein [Microcystis aeruginosa
DIANCHI905]
Length = 100
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T++ L EVFAE GTV+ + DR T + RGFGFV M S EE +AI
Sbjct: 3 IYVGNLVYEVTTNDLQEVFAEYGTVSRVYLPVDRETGKMRGFGFVEMSSDEEEAKAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|392396499|ref|YP_006433100.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
gi|390527577|gb|AFM03307.1| RRM domain-containing RNA-binding protein [Flexibacter litoralis
DSM 6794]
Length = 95
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NLPYS++ L VF+E G V S +I+ DR T RSRGFGFV M S E+ + AI
Sbjct: 3 LYVSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIEEL 62
Query: 175 DG 176
+G
Sbjct: 63 NG 64
>gi|359482021|ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|297740158|emb|CBI30340.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A++L+VG L + T L+E F++ G V A+IV DRV+DRS+GFGFVT S EEA++A
Sbjct: 33 ASKLFVGGLSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKAR 92
Query: 172 RLFDG 176
DG
Sbjct: 93 TEMDG 97
>gi|422303993|ref|ZP_16391342.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9806]
gi|425468337|ref|ZP_18847364.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9701]
gi|389790955|emb|CCI13203.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9806]
gi|389885016|emb|CCI34745.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9701]
Length = 100
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T+ L EVFAE GTV+ + DR T + RGFGFV M S EE +AI
Sbjct: 3 IYVGNLVYDVTTDDLKEVFAEYGTVSRVYLPVDRETGKMRGFGFVEMSSDEEEAKAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|59802525|gb|AAX07506.1| unknown [Gemmata sp. Wa1-1]
Length = 163
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL Y +T L +F G+V +A+++ DR T RS+GFGFV M S +EA+ AI
Sbjct: 63 GKKLYVGNLGYGVTDEQLRGMFGPYGSVQTAQVIMDRDTGRSKGFGFVEMNSDQEAQAAI 122
Query: 172 RLFDGSVS 179
+G +S
Sbjct: 123 AGMNGQMS 130
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE FA+ G +A +++ D+ T RSRGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DALDGMNGK-SVDGRTIRV 78
>gi|42521960|ref|NP_967340.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|39574490|emb|CAE77994.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
Length = 120
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNLPYS+ +L + FA+ G V SA+++ DR T RS+GFGFV M A +AI
Sbjct: 2 AKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQAI 61
Query: 172 RLFDG 176
+G
Sbjct: 62 ERGNG 66
>gi|332531199|ref|ZP_08407112.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332039306|gb|EGI75719.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 131
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL YS+ + L + F + G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLAYSIRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 LNG 66
>gi|297733872|emb|CBI15119.3| unnamed protein product [Vitis vinifera]
Length = 163
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G L YS +SL E F + G V A ++ DR T RSRGFGFVT S EEA AI
Sbjct: 39 SSKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QALDG 103
>gi|359806697|ref|NP_001241034.1| uncharacterized protein LOC100799124 [Glycine max]
gi|255645259|gb|ACU23127.1| unknown [Glycine max]
Length = 275
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +L++G + YS SL E F++ G V A I+ DR T RSRGFGF+T SVEEA AI
Sbjct: 41 STKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAI 100
Query: 172 RLFDG 176
+ DG
Sbjct: 101 QALDG 105
>gi|392961668|ref|ZP_10327123.1| RNP-1 like RNA-binding protein [Pelosinus fermentans DSM 17108]
gi|421055582|ref|ZP_15518544.1| RNP-1 like RNA-binding protein [Pelosinus fermentans B4]
gi|421058760|ref|ZP_15521418.1| RNP-1 like RNA-binding protein [Pelosinus fermentans B3]
gi|421067562|ref|ZP_15529026.1| RNP-1 like RNA-binding protein [Pelosinus fermentans A12]
gi|421072632|ref|ZP_15533741.1| RNP-1 like RNA-binding protein [Pelosinus fermentans A11]
gi|421077513|ref|ZP_15538481.1| RNP-1 like RNA-binding protein [Pelosinus fermentans JBW45]
gi|392439347|gb|EIW17058.1| RNP-1 like RNA-binding protein [Pelosinus fermentans B4]
gi|392445832|gb|EIW23143.1| RNP-1 like RNA-binding protein [Pelosinus fermentans A11]
gi|392449187|gb|EIW26337.1| RNP-1 like RNA-binding protein [Pelosinus fermentans A12]
gi|392453508|gb|EIW30384.1| RNP-1 like RNA-binding protein [Pelosinus fermentans DSM 17108]
gi|392460168|gb|EIW36502.1| RNP-1 like RNA-binding protein [Pelosinus fermentans B3]
gi|392524368|gb|EIW47526.1| RNP-1 like RNA-binding protein [Pelosinus fermentans JBW45]
Length = 83
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP+S + S LA+VF E G V S+ I+ D+ T RSRGFGFV + ++A + + +
Sbjct: 5 LYVGNLPWSTSDSDLADVFKEHGNVISSRIITDKETGRSRGFGFVEVDD-DDADKMVSMM 63
Query: 175 DGS 177
+GS
Sbjct: 64 NGS 66
>gi|221069836|ref|ZP_03545941.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220714859|gb|EED70227.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 158
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY + + L + F + G VASA ++ +R T RS+GFGFV M S EA+ AI+
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFGQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|121596408|ref|YP_988304.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608488|gb|ABM44228.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 121
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVGNLPY+ L + F++ G V SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYTFRDQDLEQTFSQFGAVQSAKVMMERDTGRSKGFGFVEMGSDAEAQAAI 61
>gi|218184292|gb|EEC66719.1| hypothetical protein OsI_33054 [Oryza sativa Indica Group]
Length = 117
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 44/78 (56%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G + Y SL E FA G V A ++ DR T RSRGFGFVT S +EA AI
Sbjct: 30 SSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAI 89
Query: 172 RLFDGSVSADGICIAIVL 189
DG V I+I L
Sbjct: 90 TGMDGKVCCANFVISIGL 107
>gi|75275079|sp|P82277.1|RRP2_SPIOL RecName: Full=30S ribosomal protein 2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 2;
Short=PSRP-2; Flags: Precursor
gi|7578881|gb|AAF64167.1|AF240462_1 plastid-specific ribosomal protein 2 precursor [Spinacia oleracea]
Length = 260
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A RLYVGN+P ++ + L + E G + AE++YD+ + RSR FGFVTM +VE+A I
Sbjct: 83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVI 142
Query: 172 -RLFDGSVSADGICIAI 187
+L D + I + I
Sbjct: 143 EKLNDTEIGGRKIKVNI 159
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++Y+GNL ++T+ L + F+E G V A++ T +S GFGFV+ S EE + AI+
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244
Query: 174 FDGSV 178
+ SV
Sbjct: 245 LNNSV 249
>gi|418528344|ref|ZP_13094294.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
gi|371454720|gb|EHN67722.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
Length = 163
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY + + L + F++ G VASA ++ +R T RS+GFGFV M S EA+ AI+
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|299531903|ref|ZP_07045303.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
gi|298720078|gb|EFI61035.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
Length = 162
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY + + L + F++ G VASA ++ +R T RS+GFGFV M S EA+ AI+
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|264680852|ref|YP_003280762.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
gi|262211368|gb|ACY35466.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
Length = 164
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY + + L + F++ G VASA ++ +R T RS+GFGFV M S EA+ AI+
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|309792103|ref|ZP_07686576.1| RNP-1 like RNA-binding protein [Oscillochloris trichoides DG-6]
gi|308225847|gb|EFO79602.1| RNP-1 like RNA-binding protein [Oscillochloris trichoides DG6]
Length = 114
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNLP+S+ + L +FA G V SA ++ DR T RSRGFGFV + V++ E IR
Sbjct: 7 KLFVGNLPWSVGDADLERIFASHGDVQSARVINDRDTGRSRGFGFVEI-DVDDVAEVIRA 65
Query: 174 FDG 176
DG
Sbjct: 66 TDG 68
>gi|15218972|ref|NP_176208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana]
gi|4249379|gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein
(RNP1) from Phaseolus vulgaris [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
gi|222423361|dbj|BAH19654.1| AT1G60000 [Arabidopsis thaliana]
gi|332195527|gb|AEE33648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 258
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
EEEE+++ +P A + +LY GNLPY++ S++LA++ + E++Y+R
Sbjct: 65 EEEEKDDGASAVLDPPAAVN---TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD 121
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
T +SRGF FVTM +VE+ I DG+
Sbjct: 122 TGQSRGFAFVTMSNVEDCNIIIDNLDGT 149
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SLA F E G V A +V+D T RSRG+GFV S E + A+
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 174 FDG 176
DG
Sbjct: 238 LDG 240
>gi|356511826|ref|XP_003524623.1| PREDICTED: uncharacterized protein LOC100782808 [Glycine max]
Length = 274
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 41/63 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G + YS SL E F++ G V A I+ DR T RSRGFGF+T SVEEA AI+
Sbjct: 43 KLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQA 102
Query: 174 FDG 176
DG
Sbjct: 103 LDG 105
>gi|222423445|dbj|BAH19693.1| AT3G52150 [Arabidopsis thaliana]
Length = 253
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV E EE A +S+ A R+Y+GN+P ++++ L ++ E G V +++YD+ + RS
Sbjct: 57 AVTETEEKPAALDPSSEAARRVYIGNIPRTVSNEQLTKLVEEHGAVEKVQVMYDKYSGRS 116
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
R FGF TM SVE+A + +G+ + +G I + + E
Sbjct: 117 RRFGFATMKSVEDANAVVEKLNGN-TVEGREIKVNITE 153
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T L +F+E G V SA++ T +S GFGFVT S E+ +
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 170 AIRLFDGSV 178
A+ + S+
Sbjct: 234 AVVALNNSL 242
>gi|86607423|ref|YP_476186.1| RNA-binding protein [Synechococcus sp. JA-3-3Ab]
gi|86555965|gb|ABD00923.1| putative RNA-binding protein [Synechococcus sp. JA-3-3Ab]
Length = 181
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + +L ++F+ AG V S +++ DR T + RGFGFVT+ + E+A++ I
Sbjct: 4 RLYVGNLPEEVDRQALEKLFSSAGEVISTKVIRDRRTGKCRGFGFVTVSTEEQAQQYIEK 63
Query: 174 FDGSVSAD 181
F+G D
Sbjct: 64 FNGHSFGD 71
>gi|209527224|ref|ZP_03275736.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376003288|ref|ZP_09781101.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|209492382|gb|EDZ92725.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375328318|emb|CCE16854.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
Length = 93
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L+EVFA+ GTV + I DR T RSRGFGFV M + +E +AI
Sbjct: 3 IYVGNLSYDVTPDDLSEVFAQYGTVKRSMIPTDRETGRSRGFGFVEMVNEDEETKAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|443476345|ref|ZP_21066256.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
gi|443018689|gb|ELS32896.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
Length = 173
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + +L ++F E+G S +++ DR T + RGFGFVT+GS E A I
Sbjct: 4 RLYVGNLPAELDRQALEKIFNESGDSVSLKVITDRKTGKCRGFGFVTVGSDEVADTVIEK 63
Query: 174 FDG 176
F+G
Sbjct: 64 FNG 66
>gi|119358437|ref|YP_913081.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119355786|gb|ABL66657.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNLPY +T L + F++ G V SA I+ D+ + RS+GFGFV M +EA+EAI
Sbjct: 3 IYIGNLPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVDMPHDDEAREAI 59
>gi|189218303|ref|YP_001938945.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
gi|189185161|gb|ACD82346.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
Length = 143
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP+ ++ + L E+F + G V ++ D++T +SRGF FVTM S + A+ AI
Sbjct: 48 RLYVGNLPFRISENDLREIFEQYGQVNEINLIVDKMTGQSRGFAFVTMESSQAAQSAINN 107
Query: 174 FDG-SVSADGICI 185
+G SVS I +
Sbjct: 108 LNGSSVSGRQIVV 120
>gi|426198367|gb|EKV48293.1| hypothetical protein AGABI2DRAFT_142473 [Agaricus bisporus var.
bisporus H97]
Length = 559
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
+EE+ EA + + +P A+ E ++VG L +S+ + LA+ F+E G V+SA + DR T
Sbjct: 289 DEEQPEAKKVKLDP---ATPETLSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNT 345
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHFGNGRCLVF 206
RSRGFG+V + + ++A+++ DG I + L P N R VF
Sbjct: 346 GRSRGFGYVHFSTADAVEKALKM--NGYEIDGRAIKVDLSTPPNSNQIRERRAKVF 399
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 72 FDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAE 131
DG + D P + Q E + +E P ++ L++GNLP+S+T L
Sbjct: 373 IDGRAIKVDLSTPPNSNQIRERRAKVFNDEISP------PSSTLFIGNLPFSITEDGLWS 426
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
F + +V + + DR T + +GFG+V + +VE+AK+A G
Sbjct: 427 YF-DGHSVKTIRLPTDRETGQLKGFGYVELENVEDAKKAFEAISG 470
>gi|149924767|ref|ZP_01913111.1| probable nucleic acid-binding protein [Plesiocystis pacifica SIR-1]
gi|149814351|gb|EDM73949.1| probable nucleic acid-binding protein [Plesiocystis pacifica SIR-1]
Length = 155
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RL+VG L + S SL E+FA+ G V A IV DR T SRGFGFVTM + ++A +A++
Sbjct: 77 RLFVGGLSWDTESDSLRELFAKVGAVVDAMIVTDRDTGDSRGFGFVTMANRKDATKAMKE 136
Query: 174 FDGSVSADGICIAIVL 189
G DG I I L
Sbjct: 137 L-GGTELDGRSIRIDL 151
>gi|308802782|ref|XP_003078704.1| RNA recognition motif (ISS) [Ostreococcus tauri]
gi|116057157|emb|CAL51584.1| RNA recognition motif (ISS) [Ostreococcus tauri]
Length = 907
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 80 DSQDEPETEQEEEEEEEAVEEEEEPK---VAASD-----EAARLYVGNLPYSMTSSSLAE 131
D D+ E E+ EE+ E V+E E PK V A+D E R++V NLPY+ T +AE
Sbjct: 322 DDLDKSEGEEANEEKSEDVKEVE-PKTKDVNAADMEALSETGRIFVRNLPYTATEEEVAE 380
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
+F + G +++ I+ DR T RS+G +VT E+ +A+ DGS+
Sbjct: 381 LFEQFGKLSAVHILVDRSTKRSKGLAYVTFAIPEDGVKAMEAVDGSI 427
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-VTDR-------SRGFGF 158
+++D+A ++V L + T + L F A S +V R VT R SRGFGF
Sbjct: 687 SSNDDALSIFVKGLDFGTTENKLRSHFLVAAQRVSGRVVSVRIVTHRGPGGKTLSRGFGF 746
Query: 159 VTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189
V + S AK + GS S DG + + L
Sbjct: 747 VELDSHRTAKSVLNALQGS-SLDGKTLKLEL 776
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P+ A A +LYVGN+P ++T+ L ++FA GTV AE++YD+ T+RSR FGFVTM
Sbjct: 61 EAPEAVA---ARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTM 117
Query: 162 GSVEEAKEAIRLFDGSVSAD 181
+ EEA A+ +G+ D
Sbjct: 118 STAEEANAAVEALNGTEVGD 137
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EP+ D ++YVGNL ++T+ L F+E G + SA + + T +S+G+GFVT
Sbjct: 158 EPEALFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFS 217
Query: 163 SVEEAKEAIRLFDGS 177
S EE + A+ F+ +
Sbjct: 218 SEEEVEAAVATFNNA 232
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LY GNLPY+ S+ LA + + E++YDR T RSRGF FVTM ++E+ + I
Sbjct: 249 ATKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVI 308
Query: 172 RLFDGSV 178
+ DG++
Sbjct: 309 KNLDGTL 315
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++T L + F G V A ++YD T RSRG+GFV + EE +AI
Sbjct: 342 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 401
Query: 174 FDGS 177
+G+
Sbjct: 402 LNGT 405
>gi|126658060|ref|ZP_01729212.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
gi|126620698|gb|EAZ91415.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
Length = 94
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L +VFAE GTV +I DR T +SRGFGFV MG+ E AI
Sbjct: 3 IYVGNLSYDVTQVDLEQVFAEYGTVKRVQIPSDRETGKSRGFGFVEMGTETEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|78186885|ref|YP_374928.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78166787|gb|ABB23885.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 90
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNLPY+++ L + F+E G VASA I+ D+ + RS+GFGFV M + A+EAI
Sbjct: 3 IYVGNLPYTISEDDLRDAFSEFGEVASANIITDKFSGRSKGFGFVEMPDDDAAREAI 59
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LY GNLPY+ S+ LA + + E++YDR T RSRGF FVTM ++E+ + I
Sbjct: 133 ATKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVI 192
Query: 172 RLFDGSV 178
+ DG++
Sbjct: 193 KNLDGTL 199
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++T L + F G V A ++YD T RSRG+GFV + EE +AI
Sbjct: 226 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 285
Query: 174 FDGS 177
+G+
Sbjct: 286 LNGT 289
>gi|291287189|ref|YP_003504005.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884349|gb|ADD68049.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
Length = 94
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y+ + L E+F G V SA I+ DR T RS+GFGFV M E+AK AI
Sbjct: 3 IYVGNLSYTSSEDELFELFENMGQVDSARIITDRDTGRSKGFGFVEMADAEQAKAAIEQL 62
Query: 175 DGSVSADGICIAIVLIEPFNCQHFGNG 201
+G+ G + + +P N G G
Sbjct: 63 NGTEFG-GRNLTVNEAKPRNNDRSGGG 88
>gi|291566709|dbj|BAI88981.1| RNA-binding protein [Arthrospira platensis NIES-39]
Length = 93
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L+ FAE GTV + I DR T RSRGFGFV M S +E K AI
Sbjct: 3 IYVGNLSYDVTPDDLSAAFAEYGTVKRSMIPTDRETGRSRGFGFVEMSSEDEEKVAINAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|428768452|ref|YP_007160242.1| RNP-1 like RNA-binding protein [Cyanobacterium aponinum PCC 10605]
gi|428682731|gb|AFZ52198.1| RNP-1 like RNA-binding protein [Cyanobacterium aponinum PCC 10605]
Length = 101
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLPY +TS L EVFAE GTV+ I DR T R RGF FV M + + + AI
Sbjct: 3 IYVGNLPYEVTSEDLMEVFAEYGTVSRVHIPTDRETGRMRGFAFVEMENDNQEESAIDAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|410941922|ref|ZP_11373714.1| hypothetical protein LEP1GSC041_2758 [Leptospira noguchii str.
2006001870]
gi|410782916|gb|EKR71915.1| hypothetical protein LEP1GSC041_2758 [Leptospira noguchii str.
2006001870]
Length = 86
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +YVGNL Y + +L ++F GTV S +IV D+ + +S+GFGFV M + EEA +AI
Sbjct: 2 SVNIYVGNLSYDLNEGTLGDLFRVHGTVNSVKIVMDQYSGKSKGFGFVEMSNKEEADKAI 61
Query: 172 RLFDG 176
+ DG
Sbjct: 62 KDLDG 66
>gi|226533248|ref|NP_001149356.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195626620|gb|ACG35140.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414884785|tpg|DAA60799.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 251
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P+ A A +LYVGN+P ++T+ L ++FA GTV AE++YD+ T+RSR FGFVTM
Sbjct: 61 EAPEAVA---ARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTM 117
Query: 162 GSVEEAKEAIRLFDGSVSAD 181
+ EEA A+ +G+ D
Sbjct: 118 STAEEANAAVEALNGTEVGD 137
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 16/109 (14%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EP+ D ++YVGNL ++T+ L F+E G + SA + + T +S+G+GFVT
Sbjct: 158 EPEALFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFS 217
Query: 163 SVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHFGNGRCLVFLSYII 211
S EE + A+ F+ +VS F+C+ + L FLS +I
Sbjct: 218 SEEEVEAAVATFNNAVS-------------FSCKFYA---FLPFLSNLI 250
>gi|145218978|ref|YP_001129687.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM 265]
gi|145205142|gb|ABP36185.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM 265]
Length = 89
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNLPYS+T L + F+ G V SA I+ D+ + RS+GFGFV M + EA+EAI
Sbjct: 3 IYVGNLPYSITEDDLRDTFSAFGQVDSANIITDKFSGRSKGFGFVDMPNDSEAREAI 59
>gi|298528813|ref|ZP_07016217.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512465|gb|EFI36367.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL ++ T + L + FAE G V+SA+I+ DR T RSRGFGFV M + A EA+
Sbjct: 4 LYVGNLSWNTTETQLRDSFAEFGEVSSAKIIEDRETGRSRGFGFVEMEN--GADEAVEKL 61
Query: 175 DGSVSADGICIAIVLIEP 192
+G DG I + + +P
Sbjct: 62 NGK-DFDGRTIKVNVAKP 78
>gi|224035665|gb|ACN36908.1| unknown [Zea mays]
Length = 251
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P+ A A +LYVGN+P ++T+ L ++FA GTV AE++YD+ T+RSR FGFVTM
Sbjct: 61 EAPEAVA---ARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTM 117
Query: 162 GSVEEAKEAIRLFDGSVSAD 181
+ EEA A+ +G+ D
Sbjct: 118 STAEEANAAVEALNGTEVGD 137
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 16/109 (14%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EP+ D ++YVGNL ++T+ L F+E G + SA + + T +S+G+GFVT
Sbjct: 158 EPEALFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFS 217
Query: 163 SVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHFGNGRCLVFLSYII 211
S EE + A+ F+ +VS F+C+ + L FLS +I
Sbjct: 218 SEEEVEAAVATFNNAVS-------------FSCRFYA---FLPFLSNLI 250
>gi|189499100|ref|YP_001958570.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189494541|gb|ACE03089.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 90
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNLPYS++ L++ FA+ G V A I+ D+ T RS+GFGFV M + +EA+ AI
Sbjct: 3 IYIGNLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAI 59
>gi|338812035|ref|ZP_08624234.1| hypothetical protein ALO_08073 [Acetonema longum DSM 6540]
gi|337276004|gb|EGO64442.1| hypothetical protein ALO_08073 [Acetonema longum DSM 6540]
Length = 83
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
AA LYVGNLP+S T ++L E F E GTV S+ I+ D+ T RSRGFGFV
Sbjct: 2 AATLYVGNLPWSTTDTALTEAFREHGTVYSSRIITDKETGRSRGFGFV 49
>gi|193211762|ref|YP_001997715.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193085239|gb|ACF10515.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 90
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNLPYS++ L + F+E G V SA I+ D+ + RS+GFGFV M + EA+EAI
Sbjct: 3 IYIGNLPYSVSEDDLRDAFSEFGQVHSANIITDKFSGRSKGFGFVDMPNDGEAREAI 59
>gi|359806610|ref|NP_001241528.1| uncharacterized protein LOC100820203 [Glycine max]
gi|255645445|gb|ACU23218.1| unknown [Glycine max]
gi|255645775|gb|ACU23380.1| unknown [Glycine max]
Length = 289
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LY GNLPYS+ S+ LA + + G+ E++YDR T +SRGF FVTM +E+ I
Sbjct: 116 ATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVI 175
Query: 172 RLFDG 176
DG
Sbjct: 176 ENLDG 180
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+L+VGNL +S+T+ L + F E GTV A ++YD T RSRG+GFV
Sbjct: 209 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFV 254
>gi|412986787|emb|CCO15213.1| predicted protein [Bathycoccus prasinos]
Length = 260
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 95 EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
EE E+ PK + ++Y GNL + M L ++ AE G V + ++ DR T RSR
Sbjct: 153 EERPAREQRPKRNWDADGRKVYFGNLSWGMDHLDLQDLCAEFGNVDESRLITDRETGRSR 212
Query: 155 GFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
GFGFVTM S +EA++ + +G DG + +
Sbjct: 213 GFGFVTMSSEKEAEDVVAQLNGQ-DVDGRVLRV 244
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LY+GNL + M +L ++F++ + IV DR T RSRGFGF T+ S E A AI
Sbjct: 75 KLYIGNLSWDMDDQALNDLFSQY-QASDCVIVTDRNTGRSRGFGFATVPSQEMADSAI 131
>gi|91786529|ref|YP_547481.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91695754|gb|ABE42583.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 134
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY++ L + F G++ SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 174 FDGSVSADGICIAIVLIEPFNCQ 196
+G S G I + P +
Sbjct: 64 MNGQ-SLGGRSITVNEARPMEAR 85
>gi|398803602|ref|ZP_10562623.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398096229|gb|EJL86556.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 133
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY++ L + F G++ SA+++ +R T RS+GFGFV MGS EA+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 174 FDGSVSADGICIAIVLIEPFNCQ 196
+G S G I + P +
Sbjct: 64 MNGQ-SLGGRSITVNEARPMEAR 85
>gi|409079870|gb|EKM80231.1| hypothetical protein AGABI1DRAFT_73218 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 568
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
+EE+ EA + + +P A+ E ++VG L +S+ + LA+ F+E G V+SA + DR T
Sbjct: 289 DEEQPEAKKVKLDP---ATPETLSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNT 345
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHFGNGRCLVF 206
RSRGFG+V + + ++A+++ DG I + L P N R VF
Sbjct: 346 GRSRGFGYVHFSTADAVEKALKM--NGYEIDGRAIKVDLSTPPNSNQIRERRAKVF 399
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 72 FDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAE 131
DG + D P + Q E + +E P ++ L++GNLP+S+T L
Sbjct: 373 IDGRAIKVDLSTPPNSNQIRERRAKVFNDEISP------PSSTLFIGNLPFSITEDGLWS 426
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
F + +V + + DR T + +GFG+V + +VE+AK+A G
Sbjct: 427 YF-DGHSVKTIRLPTDRETGQLKGFGYVELENVEDAKKAFEAISG 470
>gi|430744003|ref|YP_007203132.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430015723|gb|AGA27437.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 143
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG-SVEEAKEA 170
A +LYVGNL Y T +L E+F+E G V SA+I+ DR T+RS+GFGFV M +EA A
Sbjct: 2 AKKLYVGNLTYDTTEDNLVELFSEYGEVLSAQIIIDRDTNRSKGFGFVEMADGADEAANA 61
Query: 171 I 171
+
Sbjct: 62 L 62
>gi|296121725|ref|YP_003629503.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM 3776]
gi|296014065|gb|ADG67304.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM 3776]
Length = 104
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL Y + +S L ++F+ G V SA++V DR T RS+GFGFV G + A +AI
Sbjct: 2 GTKLYVGNLTYDVNNSGLEQLFSSFGEVRSAQVVMDRETGRSKGFGFVEFGDSQSASDAI 61
Query: 172 RLFDG 176
+G
Sbjct: 62 NAMNG 66
>gi|354556704|ref|ZP_08975994.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
gi|353551316|gb|EHC20722.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
Length = 94
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L EVF E GTV +I DR T +SRGFGFV MG+ E AI
Sbjct: 3 IYVGNLSYEVTQVDLEEVFGEYGTVKRVQIPSDRETGKSRGFGFVEMGTETEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|150005753|ref|YP_001300497.1| RNA-binding protein [Bacteroides vulgatus ATCC 8482]
gi|294777233|ref|ZP_06742689.1| RNA-binding protein [Bacteroides vulgatus PC510]
gi|319640924|ref|ZP_07995633.1| RNA-binding protein [Bacteroides sp. 3_1_40A]
gi|345519428|ref|ZP_08798851.1| hypothetical protein BSFG_01317 [Bacteroides sp. 4_3_47FAA]
gi|423314617|ref|ZP_17292550.1| hypothetical protein HMPREF1058_03162 [Bacteroides vulgatus
CL09T03C04]
gi|149934177|gb|ABR40875.1| putative RNA-binding protein [Bacteroides vulgatus ATCC 8482]
gi|254834861|gb|EET15170.1| hypothetical protein BSFG_01317 [Bacteroides sp. 4_3_47FAA]
gi|294448947|gb|EFG17491.1| RNA-binding protein [Bacteroides vulgatus PC510]
gi|317387443|gb|EFV68313.1| RNA-binding protein [Bacteroides sp. 3_1_40A]
gi|392681946|gb|EIY75301.1| hypothetical protein HMPREF1058_03162 [Bacteroides vulgatus
CL09T03C04]
Length = 81
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y++ L V E GTVAS +++ DR T RS+GF FV M + +EAKEAI+
Sbjct: 3 LYIGNLNYNVREGDLRGVMEEYGTVASVKLITDRETRRSKGFAFVEMPNDDEAKEAIKQL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|213510736|ref|NP_001133148.1| cold inducible RNA binding protein [Salmo salar]
gi|197632151|gb|ACH70799.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219968|gb|ACM08645.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|221221054|gb|ACM09188.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 154
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE F++ G +A +++ DR T R RGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMEGMNGQ-SLDGRTIRV 78
>gi|407002630|gb|EKE19334.1| RNA recognition motif-containing protein, partial [uncultured
bacterium]
Length = 56
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A +LYVG LPY+ + +L ++FA+AG+V SA I+ D++T RS+GFGFV M S E
Sbjct: 2 ATKLYVGGLPYATSEDALRDLFAQAGSVTSATIIMDKMTGRSKGFGFVEMSSDAE 56
>gi|58269652|ref|XP_571982.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228218|gb|AAW44675.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 182
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A+++YVGNL ++ T +L +VF+ GTV ++ DR T RSRGFGFVT GS +EA+ AI
Sbjct: 3 ASKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAI 62
>gi|147774036|emb|CAN71872.1| hypothetical protein VITISV_038162 [Vitis vinifera]
Length = 272
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G L YS +SL E F + G V A ++ DR T RSRGFGFVT S EEA AI
Sbjct: 39 SSKLFIGGLSYSTDDTSLREAFYKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QALDG 103
>gi|398340223|ref|ZP_10524926.1| RNA-binding protein [Leptospira kirschneri serovar Bim str. 1051]
gi|418677162|ref|ZP_13238439.1| hypothetical protein LEP1GSC044_1081 [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418685558|ref|ZP_13246734.1| hypothetical protein LEP1GSC064_3119 [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418694370|ref|ZP_13255408.1| hypothetical protein LEP1GSC081_2699 [Leptospira kirschneri str.
H1]
gi|418740120|ref|ZP_13296500.1| hypothetical protein LEP1GSC122_1895 [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421089500|ref|ZP_15550307.1| hypothetical protein LEP1GSC131_4488 [Leptospira kirschneri str.
200802841]
gi|421109387|ref|ZP_15569908.1| hypothetical protein LEP1GSC082_4090 [Leptospira kirschneri str.
H2]
gi|421130284|ref|ZP_15590479.1| hypothetical protein LEP1GSC018_3937 [Leptospira kirschneri str.
2008720114]
gi|400322475|gb|EJO70332.1| hypothetical protein LEP1GSC044_1081 [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409957877|gb|EKO16780.1| hypothetical protein LEP1GSC081_2699 [Leptospira kirschneri str.
H1]
gi|410001748|gb|EKO52341.1| hypothetical protein LEP1GSC131_4488 [Leptospira kirschneri str.
200802841]
gi|410005576|gb|EKO59366.1| hypothetical protein LEP1GSC082_4090 [Leptospira kirschneri str.
H2]
gi|410358386|gb|EKP05554.1| hypothetical protein LEP1GSC018_3937 [Leptospira kirschneri str.
2008720114]
gi|410740166|gb|EKQ84888.1| hypothetical protein LEP1GSC064_3119 [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410752706|gb|EKR09679.1| hypothetical protein LEP1GSC122_1895 [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 86
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +YVGNL Y + +L ++F GTV S +IV D+ + +S+GFGFV M + EEA +AI
Sbjct: 2 SVNIYVGNLSYDLNEGTLGDLFRAHGTVNSVKIVMDQYSGKSKGFGFVEMPNKEEADKAI 61
Query: 172 RLFDGS 177
+ DG
Sbjct: 62 KDLDGK 67
>gi|409991967|ref|ZP_11275186.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
gi|409937161|gb|EKN78606.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
Length = 93
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L+ FAE GTV + I DR T RSRGFGFV M S +E K AI
Sbjct: 3 IYVGNLSYDVTPDDLSAAFAEYGTVKRSMIPTDRETGRSRGFGFVEMSSEDEEKVAIDAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|221221302|gb|ACM09312.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 131
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE F++ G +A +++ DR T R RGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMEGMNGQ-SLDGRTIRV 78
>gi|172038014|ref|YP_001804515.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|171699468|gb|ACB52449.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
Length = 108
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L EVF E GTV +I DR T +SRGFGFV MG+ E AI
Sbjct: 17 IYVGNLSYEVTQVDLEEVFGEYGTVKRVQIPSDRETGKSRGFGFVEMGTETEETAAIEAL 76
Query: 175 DGS 177
DG+
Sbjct: 77 DGA 79
>gi|225457213|ref|XP_002284026.1| PREDICTED: uncharacterized protein LOC100256940 [Vitis vinifera]
Length = 277
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G L YS +SL E F + G V A ++ DR T RSRGFGFVT S EEA AI
Sbjct: 39 SSKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QALDG 103
>gi|257095113|ref|YP_003168754.1| RNP-1 like RNA-binding protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047637|gb|ACV36825.1| RNP-1 like RNA-binding protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 110
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 39/53 (73%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+LYVGNL Y++ L +FA GTVASA+++ DR T RS+GFGFV MGS +E
Sbjct: 4 KLYVGNLSYTVDQGELTALFAAHGTVASAQVITDRETGRSKGFGFVEMGSDQE 56
>gi|321260943|ref|XP_003195191.1| glycine-rich RNA binding protein [Cryptococcus gattii WM276]
gi|317461664|gb|ADV23404.1| Glycine-rich RNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 177
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A+++YVGNL ++ T +L +VF+ GTV ++ DR T RSRGFGFVT GS +EA+ AI
Sbjct: 3 ASKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAI 62
>gi|348550387|ref|XP_003461013.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Cavia porcellus]
Length = 173
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L++G L + SL EVF++ G +A +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFIGGLSFDTNEQSLEEVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|344345229|ref|ZP_08776084.1| RNP-1 like RNA-binding protein [Marichromatium purpuratum 984]
gi|343803180|gb|EGV21091.1| RNP-1 like RNA-binding protein [Marichromatium purpuratum 984]
Length = 90
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
R+YVGNLPYS+T L ++F+ G +ASAE++ D+ + +S+GFGFV M + EA AI+
Sbjct: 2 RIYVGNLPYSVTDDELRDIFSGFGELASAEVIKDKFSGQSKGFGFVDMPNNSEADTAIK 60
>gi|423225541|ref|ZP_17212008.1| hypothetical protein HMPREF1062_04194 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392632469|gb|EIY26429.1| hypothetical protein HMPREF1062_04194 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 129
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL ++ S SL E+F++ G V SA I+ DR T RSRGFGFV M + EE ++AI
Sbjct: 3 IYVANLSWNTNSDSLQELFSQYGEVTSAYIINDRETGRSRGFGFVEMPNDEEGQKAIDAL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ +G IAI + P
Sbjct: 63 N-ETEFEGKNIAISVARP 79
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 95 EEAVEEEEEPKVAA-SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
+E EE P++ +D +LYV NL +S+T++ + ++FA++GTV EI+ + RS
Sbjct: 61 QEVAATEETPELTQPTDNVKKLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSK-DGRS 119
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFN 194
+G+ FVTM S EEA+ A+ FD S G I + L + F
Sbjct: 120 KGYAFVTMASGEEAQAAVDKFD-SYELSGRIIRVELAKRFK 159
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+Y NL + S+ L ++FAE T +SA +V+D + RS G+GFV+ + E+A+ AI
Sbjct: 179 IYASNLAWKARSTHLRQLFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAIST 238
Query: 174 FDG 176
DG
Sbjct: 239 VDG 241
>gi|224539725|ref|ZP_03680264.1| hypothetical protein BACCELL_04634 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518648|gb|EEF87753.1| hypothetical protein BACCELL_04634 [Bacteroides cellulosilyticus
DSM 14838]
Length = 130
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL ++ S SL E+F++ G V SA I+ DR T RSRGFGFV M + EE ++AI
Sbjct: 3 IYVANLSWNTNSDSLQELFSQYGEVTSAYIINDRETGRSRGFGFVEMPNDEEGQKAIDAL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ +G IAI + P
Sbjct: 63 N-ETEFEGKNIAISVARP 79
>gi|58269650|ref|XP_571981.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134113905|ref|XP_774200.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256835|gb|EAL19553.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228217|gb|AAW44674.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 161
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A+++YVGNL ++ T +L +VF+ GTV ++ DR T RSRGFGFVT GS +EA+ AI
Sbjct: 3 ASKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAI 62
>gi|67924769|ref|ZP_00518171.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|416405804|ref|ZP_11687965.1| RNA-binding region RNP-1 [Crocosphaera watsonii WH 0003]
gi|67853394|gb|EAM48751.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|357261220|gb|EHJ10516.1| RNA-binding region RNP-1 [Crocosphaera watsonii WH 0003]
Length = 94
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T + L +VFAE GTV +++ DR T R RGFGFV M + E + AI
Sbjct: 3 IYVGNLSYDVTDADLEQVFAEYGTVKRVQLLTDRETGRPRGFGFVEMDTETEEESAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|166367328|ref|YP_001659601.1| RNA-binding region protein [Microcystis aeruginosa NIES-843]
gi|425440525|ref|ZP_18820825.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9717]
gi|166089701|dbj|BAG04409.1| RNA-binding region protein [Microcystis aeruginosa NIES-843]
gi|389719028|emb|CCH97091.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9717]
Length = 100
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T+ L EVFAE GTV+ + DR T + RGFGFV M S EE +AI
Sbjct: 3 IYVGNLVYDVTTDDLKEVFAEYGTVSRVYLPVDRETGKMRGFGFVEMSSDEEEAKAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|353235522|emb|CCA67534.1| related to glycine-rich RNA-binding protein [Piriformospora indica
DSM 11827]
Length = 236
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A++YVGNL ++ T +L E F + G V + ++ DR T RSRGFGFVT S EEA AI
Sbjct: 2 SAKIYVGNLSWNTTDDTLREAFRQYGNVVDSIVMRDRETGRSRGFGFVTYSSEEEASNAI 61
Query: 172 RLFDGSVSADGICIAIVL 189
+ S DG I + L
Sbjct: 62 SGLN-ETSLDGRQIKVNL 78
>gi|434391986|ref|YP_007126933.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
gi|428263827|gb|AFZ29773.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
Length = 160
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 112 AARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ RLY+GNLP + L VFAEAG + +++ DR T + RGFGFVT+ S E+A +
Sbjct: 2 SVRLYIGNLPKEELERQELQAVFAEAGDSVTTKVIKDRKTGKCRGFGFVTVNSDEQADQI 61
Query: 171 IRLFDGSVSAD 181
I F+G + D
Sbjct: 62 IEKFNGYMFKD 72
>gi|121606987|ref|YP_984316.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120595956|gb|ABM39395.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 152
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPYS+ L + F + G V SA+++ +R T RS+GFGFV M S EA+ AI
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMASDAEAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|19881711|gb|AAM01112.1|AC098682_16 Putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 119
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G + Y SL E FA G V A ++ DR T RSRGFGFVT S +EA AI
Sbjct: 30 SSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAI 89
Query: 172 RLFDGSVSADGICIAIVLIEPFNCQHFGNGRCL 204
DG EPF H G RC
Sbjct: 90 TGMDGKT--------FPKTEPFG--HAGWQRCF 112
>gi|115488680|ref|NP_001066827.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|77555842|gb|ABA98638.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113649334|dbj|BAF29846.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|125579440|gb|EAZ20586.1| hypothetical protein OsJ_36195 [Oryza sativa Japonica Group]
gi|215694288|dbj|BAG89281.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708787|dbj|BAG94056.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 258
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L Y SL + FA G V A+I+ DR T RSRGFGF+T S EEA AI
Sbjct: 30 SSKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAI 89
Query: 172 RLFDG 176
DG
Sbjct: 90 TALDG 94
>gi|37522099|ref|NP_925476.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
gi|35213098|dbj|BAC90471.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
Length = 123
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNLP+S+T + E F+E GTV S +I DR T R RGF FV M EEAK I
Sbjct: 3 VFVGNLPFSVTEQDITEAFSEYGTVKSVKIPTDRETGRPRGFAFVEMADEEEAK-VIESL 61
Query: 175 DGSVSADGICIAIVLIEP 192
DG+ + D I + EP
Sbjct: 62 DGA-TWDNRQIRVNKAEP 78
>gi|256839767|ref|ZP_05545276.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738697|gb|EEU52022.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 123
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL Y+++ + L ++FA+ G + SA+++ DR T RSRGFGFV + E AK+AI
Sbjct: 3 LYISNLSYNISDADLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ S DG I I P
Sbjct: 63 N-QASYDGKVINITEARP 79
>gi|351725383|ref|NP_001238370.1| uncharacterized protein LOC100527079 [Glycine max]
gi|255631508|gb|ACU16121.1| unknown [Glycine max]
Length = 130
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +L+VG L + T ++L+E F+ G V A+IV DRV+DRS+GFGFVT S +EA+ AI
Sbjct: 28 AYKLFVGGLSFYTTENALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAI 87
Query: 172 RLFDGSVSADGICIAIVLIEP 192
G + +G I + +P
Sbjct: 88 EDMKGK-TLNGRVIFVDYAKP 107
>gi|268680880|ref|YP_003305311.1| RNP-1 like RNA-binding protein [Sulfurospirillum deleyianum DSM
6946]
gi|268618911|gb|ACZ13276.1| RNP-1 like RNA-binding protein [Sulfurospirillum deleyianum DSM
6946]
Length = 101
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGN+ Y MT L E+F+ G V+SA I+ DR T RS+GFGFV M + EAK AI
Sbjct: 3 IYVGNVKYEMTGDQLKEMFSAYGEVSSARIINDRETGRSKGFGFVEMPNDSEAKAAI 59
>gi|428309319|ref|YP_007120296.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428250931|gb|AFZ16890.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 101
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T + EVFAE GTV + + DR T R RGF FV MG+ EE AI
Sbjct: 3 IYVGNLSYDVTEEDIREVFAEYGTVNNVTLPKDRETGRKRGFAFVEMGTDEEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|160872542|ref|ZP_02062674.1| RNA-binding protein [Rickettsiella grylli]
gi|159121341|gb|EDP46679.1| RNA-binding protein [Rickettsiella grylli]
Length = 133
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG L YS+ L E+F GTV+ +++ D + RS+GFGFV M + EEAKEAI
Sbjct: 4 RLYVGGLSYSVDDDGLRELFTPFGTVSFVKVIRDFHSGRSKGFGFVEMSTPEEAKEAIEA 63
Query: 174 FDGSV 178
GS+
Sbjct: 64 LHGSI 68
>gi|408393961|gb|EKJ73218.1| hypothetical protein FPSE_06642 [Fusarium pseudograminearum CS3096]
Length = 112
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A+LY+GNL ++ T +L E G + + ++ DR T RSRGFGFVT GSVEEA+ A+
Sbjct: 2 SAKLYIGNLSWNTTDDTLRNACQEFGMIIDSIVMRDRDTGRSRGFGFVTFGSVEEAENAV 61
>gi|430744757|ref|YP_007203886.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430016477|gb|AGA28191.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 114
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL Y++ S L +F GTV SA+I+ DR T+RS+GFGFV M + +A+ AI
Sbjct: 2 GKKLYVGNLTYNVNESDLEALFTPFGTVQSAQIIIDRDTNRSKGFGFVEMDTDAQAQAAI 61
Query: 172 R 172
+
Sbjct: 62 Q 62
>gi|24216457|ref|NP_713938.1| RNA-binding protein [Leptospira interrogans serovar Lai str. 56601]
gi|45656373|ref|YP_000459.1| RNA-binding protein [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|386075447|ref|YP_005989767.1| RNA-binding protein [Leptospira interrogans serovar Lai str. IPAV]
gi|417762400|ref|ZP_12410391.1| hypothetical protein LEP1GSC027_2973 [Leptospira interrogans str.
2002000624]
gi|417768164|ref|ZP_12416098.1| hypothetical protein LEP1GSC007_4445 [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417770031|ref|ZP_12417943.1| hypothetical protein LEP1GSC014_0844 [Leptospira interrogans
serovar Pomona str. Pomona]
gi|417773456|ref|ZP_12421335.1| hypothetical protein LEP1GSC025_0942 [Leptospira interrogans str.
2002000621]
gi|417784087|ref|ZP_12431798.1| hypothetical protein LEP1GSC077_2748 [Leptospira interrogans str.
C10069]
gi|418669622|ref|ZP_13231001.1| hypothetical protein LEP1GSC019_1988 [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|418673048|ref|ZP_13234376.1| hypothetical protein LEP1GSC026_4363 [Leptospira interrogans str.
2002000623]
gi|418681348|ref|ZP_13242579.1| hypothetical protein LEP1GSC045_2259 [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418688776|ref|ZP_13249915.1| hypothetical protein LEP1GSC080_3683 [Leptospira interrogans str.
FPW2026]
gi|418699479|ref|ZP_13260438.1| hypothetical protein LEP1GSC087_4123 [Leptospira interrogans
serovar Bataviae str. L1111]
gi|418705840|ref|ZP_13266696.1| hypothetical protein LEP1GSC096_1136 [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418707806|ref|ZP_13268622.1| hypothetical protein LEP1GSC097_4629 [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|418712506|ref|ZP_13273245.1| hypothetical protein LEP1GSC099_3865 [Leptospira interrogans str.
UI 08452]
gi|418725826|ref|ZP_13284441.1| hypothetical protein LEP1GSC104_3981 [Leptospira interrogans str.
UI 12621]
gi|418729643|ref|ZP_13288190.1| hypothetical protein LEP1GSC105_2490 [Leptospira interrogans str.
UI 12758]
gi|421084407|ref|ZP_15545267.1| hypothetical protein LEP1GSC173_4310 [Leptospira santarosai str.
HAI1594]
gi|421104458|ref|ZP_15565053.1| hypothetical protein LEP1GSC117_1433 [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|421117726|ref|ZP_15578083.1| hypothetical protein LEP1GSC069_3724 [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|421123613|ref|ZP_15583889.1| hypothetical protein LEP1GSC057_0578 [Leptospira interrogans str.
Brem 329]
gi|421124874|ref|ZP_15585131.1| hypothetical protein LEP1GSC020_2921 [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421135877|ref|ZP_15595996.1| hypothetical protein LEP1GSC009_3390 [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|24197759|gb|AAN50956.1|AE011532_4 RNA-binding protein [Leptospira interrogans serovar Lai str. 56601]
gi|45599607|gb|AAS69096.1| RNA-binding protein [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|353459239|gb|AER03784.1| RNA-binding protein [Leptospira interrogans serovar Lai str. IPAV]
gi|400326917|gb|EJO79175.1| hypothetical protein LEP1GSC045_2259 [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400349275|gb|EJP01573.1| hypothetical protein LEP1GSC007_4445 [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|400362017|gb|EJP17966.1| hypothetical protein LEP1GSC080_3683 [Leptospira interrogans str.
FPW2026]
gi|409941846|gb|EKN87472.1| hypothetical protein LEP1GSC027_2973 [Leptospira interrogans str.
2002000624]
gi|409947987|gb|EKN97979.1| hypothetical protein LEP1GSC014_0844 [Leptospira interrogans
serovar Pomona str. Pomona]
gi|409952711|gb|EKO07219.1| hypothetical protein LEP1GSC077_2748 [Leptospira interrogans str.
C10069]
gi|409960915|gb|EKO24665.1| hypothetical protein LEP1GSC104_3981 [Leptospira interrogans str.
UI 12621]
gi|410010698|gb|EKO68832.1| hypothetical protein LEP1GSC069_3724 [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410019971|gb|EKO86777.1| hypothetical protein LEP1GSC009_3390 [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410343281|gb|EKO94532.1| hypothetical protein LEP1GSC057_0578 [Leptospira interrogans str.
Brem 329]
gi|410365910|gb|EKP21303.1| hypothetical protein LEP1GSC117_1433 [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410432979|gb|EKP77330.1| hypothetical protein LEP1GSC173_4310 [Leptospira santarosai str.
HAI1594]
gi|410438005|gb|EKP87104.1| hypothetical protein LEP1GSC020_2921 [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410576765|gb|EKQ39768.1| hypothetical protein LEP1GSC025_0942 [Leptospira interrogans str.
2002000621]
gi|410579949|gb|EKQ47782.1| hypothetical protein LEP1GSC026_4363 [Leptospira interrogans str.
2002000623]
gi|410754553|gb|EKR16203.1| hypothetical protein LEP1GSC019_1988 [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|410761485|gb|EKR27664.1| hypothetical protein LEP1GSC087_4123 [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410764559|gb|EKR35270.1| hypothetical protein LEP1GSC096_1136 [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410771848|gb|EKR47046.1| hypothetical protein LEP1GSC097_4629 [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410775821|gb|EKR55812.1| hypothetical protein LEP1GSC105_2490 [Leptospira interrogans str.
UI 12758]
gi|410790983|gb|EKR84665.1| hypothetical protein LEP1GSC099_3865 [Leptospira interrogans str.
UI 08452]
gi|455669275|gb|EMF34422.1| hypothetical protein LEP1GSC201_4092 [Leptospira interrogans
serovar Pomona str. Fox 32256]
gi|455788365|gb|EMF40352.1| hypothetical protein LEP1GSC067_2699 [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456823347|gb|EMF71817.1| hypothetical protein LEP1GSC148_3574 [Leptospira interrogans
serovar Canicola str. LT1962]
gi|456969675|gb|EMG10620.1| hypothetical protein LEP1GSC151_4904 [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
gi|456988316|gb|EMG23415.1| hypothetical protein LEP1GSC150_4425 [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 86
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +YVGNL Y + +L ++F GTV S +I+ D+ + +S+GFGFV M + EEA +AI
Sbjct: 2 SVNIYVGNLSYDLNEGTLGDLFRAHGTVNSVKIIMDQYSGKSKGFGFVEMPNKEEADKAI 61
Query: 172 RLFDGS 177
+ DG
Sbjct: 62 KDLDGK 67
>gi|398810917|ref|ZP_10569726.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398081873|gb|EJL72641.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 134
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL YS+ + L + F E G + SA+++ +R T RS+GFGFV MGS EA AI
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGAIVSAKVMMERDTGRSKGFGFVEMGSDAEALAAIEA 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|319791037|ref|YP_004152677.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315593500|gb|ADU34566.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 138
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL YS+ + L + F E G + SA+++ +R T RS+GFGFV MGS EA AI
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGAIVSAKVMMERDTGRSKGFGFVEMGSDAEALAAIEA 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|145219698|ref|YP_001130407.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM 265]
gi|145205862|gb|ABP36905.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM 265]
Length = 90
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNLPY+++ L + F+E G V SA I+ D+ + RS+GFGFV M + A+EAI
Sbjct: 3 IYVGNLPYTVSEDDLRDAFSEFGQVESANIIMDKFSGRSKGFGFVEMSDDDAAREAI 59
>gi|189465920|ref|ZP_03014705.1| hypothetical protein BACINT_02283 [Bacteroides intestinalis DSM
17393]
gi|189434184|gb|EDV03169.1| hypothetical protein BACINT_02283 [Bacteroides intestinalis DSM
17393]
Length = 128
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL ++ S SL E+F++ G V SA I+ DR T RSRGFGFV M + EE ++AI
Sbjct: 3 IYVANLSWNTNSDSLQELFSQYGEVTSAYIINDRETGRSRGFGFVEMPNDEEGQKAIDTL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ +G IA+ + P
Sbjct: 63 N-ETEFEGKNIAVSVARP 79
>gi|298246745|ref|ZP_06970550.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297549404|gb|EFH83270.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 109
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG LPY T L ++F + G V A ++ DR T RS+GFGFV M S +EA+ AI
Sbjct: 2 RIYVGGLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARVAIEQ 61
Query: 174 FDGSV 178
+GS
Sbjct: 62 LNGST 66
>gi|449500867|ref|XP_004161215.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +L+VG L Y T L+E F++ G V A +V DRV+D+S+GFGFVT S++EA A+
Sbjct: 34 ATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTAL 93
Query: 172 RLFDG 176
+G
Sbjct: 94 SEMNG 98
>gi|193212689|ref|YP_001998642.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193086166|gb|ACF11442.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 88
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNL Y +T + L + F+E G VA A ++ D+ + RS+GFGFV M + EEA EAI
Sbjct: 3 IYIGNLDYEITETDLRDAFSEFGDVAKASVIMDKFSGRSKGFGFVEMTNDEEANEAI 59
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 109 SDEA---ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
SDE+ +LY GNLPYS+ S+ LA + + G+ E++YDR T +SRGF FVTM +E
Sbjct: 106 SDESFASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIE 165
Query: 166 EAKEAIRLFDG 176
+ I DG
Sbjct: 166 DCNAVIENLDG 176
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S+T+ L + F E GTV A ++YD T RSRG+GFV + EE + A+
Sbjct: 205 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGA 264
Query: 174 FDGSVSADGICIAIVLIEPFNCQ 196
+ V +G + + L E Q
Sbjct: 265 LN-DVELEGRAMRVSLAEGKRAQ 286
>gi|388500434|gb|AFK38283.1| unknown [Lotus japonicus]
Length = 273
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPYS+ S+ LA + E G+ E++YDR + +SRGF FVTM VE+ I
Sbjct: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
Query: 174 FDG 176
DG
Sbjct: 162 LDG 164
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SL +VF E GTV A ++YD T RSRG+GFV E + A+
Sbjct: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
Query: 174 FDGSVSADGICIAIVLIE 191
+ +V +G I + L E
Sbjct: 253 LN-NVELEGRAIRVSLAE 269
>gi|301310455|ref|ZP_07216394.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides sp.
20_3]
gi|423336704|ref|ZP_17314451.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
gi|300832029|gb|EFK62660.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides sp.
20_3]
gi|409240584|gb|EKN33362.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
Length = 123
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL Y+++ L ++FA+ G + SA+++ DR T RSRGFGFV + E AK+AI
Sbjct: 3 LYISNLSYNISDEDLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ S DG I I P
Sbjct: 63 N-QASYDGKVINITEARP 79
>gi|428305437|ref|YP_007142262.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428246972|gb|AFZ12752.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 102
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L EVFAE GTV ++ DR T R RGFGFV M + +E AI
Sbjct: 3 IYVGNLSYQVTEEDLTEVFAEYGTVKRVQLPTDRETGRMRGFGFVEMSTDDEETAAIDAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|449462934|ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +L+VG L Y T L+E F++ G V A +V DRV+D+S+GFGFVT S++EA A+
Sbjct: 34 ATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTAL 93
Query: 172 RLFDG 176
+G
Sbjct: 94 SEMNG 98
>gi|283779286|ref|YP_003370041.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
gi|283437739|gb|ADB16181.1| RNP-1 like RNA-binding protein [Pirellula staleyi DSM 6068]
Length = 100
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+LYVGNL Y + + SL E+F++ G V SA+++ DR T RS+GFGFV M A+ AI+
Sbjct: 4 KLYVGNLSYDVNNQSLEELFSQFGAVRSAQVIQDRETGRSKGFGFVEMQDDNAARSAIQ 62
>gi|334326698|ref|XP_001365067.2| PREDICTED: cold-inducible RNA-binding protein-like [Monodelphis
domestica]
Length = 172
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G +A +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LY GNLPYS+ S+ LA + + G+ E++YDR + +SRGF FVTM +E+ I
Sbjct: 109 ATKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTMSCIEDCNAVI 168
Query: 172 RLFDG 176
DG
Sbjct: 169 ENLDG 173
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+L+VGNL +S+T+ L + F E GTV A ++YD T RSRG+GFV + E + A+
Sbjct: 202 KLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAV 259
>gi|159163576|pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 9 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 67
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 68 KDAMMAMNGK-SVDGRQIRV 86
>gi|304055|gb|AAA17426.1| RNA-binding protein [Anabaena sp.]
Length = 103
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T SL VFAE G+V ++ DR T R RGFGFV MGS E AI
Sbjct: 3 VYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|17229579|ref|NP_486127.1| RNA-binding protein RbpA2 [Nostoc sp. PCC 7120]
gi|75909339|ref|YP_323635.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|17131178|dbj|BAB73786.1| RNA-binding protein RbpA2 [Nostoc sp. PCC 7120]
gi|75703064|gb|ABA22740.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 103
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T SL VFAE G+V ++ DR T R RGFGFV MGS E AI
Sbjct: 3 VYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 31/195 (15%)
Query: 33 PSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEE 92
P F K+P +KL + S H+ S S+F+ F Q+ Q+ TEQ E
Sbjct: 13 PQRFSAKAPISIKL----HASTSHI-FSSKSFFKTGRLCF---QLCSTLQEVAPTEQTLE 64
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
+ +D +LYV NL +S+T++ + ++FA+ GTV EI+ + R
Sbjct: 65 ------------PIQPTDNVKKLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSK-DGR 111
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFN---------CQHFGNGRC 203
S+G+ FVTM S EEA+ A+ FD S G I + L + G R
Sbjct: 112 SKGYAFVTMASGEEAQAAVDKFD-SYELSGRIIRVELAKRLKKPPSLPPPPGPRPGETRH 170
Query: 204 LVFLSYIILDVHSIH 218
+++ S + S H
Sbjct: 171 VIYASNLAWKARSTH 185
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+Y NL + S+ L +VF E T +SA +V+D + RS G+GFV+ + E+A+ AI
Sbjct: 172 IYASNLAWKARSTHLRQVFTENFKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAIST 231
Query: 174 FDG 176
DG
Sbjct: 232 VDG 234
>gi|67483728|ref|XP_657084.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449705266|gb|EMD45349.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 136
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
RLY+G+L YS+T SL F + GTV ++V DR + RS+GFGFVT E+AK+AI
Sbjct: 2 TRLYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAI 60
>gi|434396627|ref|YP_007130631.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
gi|428267724|gb|AFZ33665.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
Length = 102
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGN+PY +T L+ +FAE GTV + DR T R RGFGFV M + E +AI
Sbjct: 3 IYVGNIPYEVTQEDLSSIFAEYGTVTRVYLPVDRETGRMRGFGFVEMSNETEEDQAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|22725943|gb|AAN04953.1| Putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 147
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 44/92 (47%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ E EP+ A G + Y SL E FA G V A ++ DR T RSRGFG
Sbjct: 46 LAEGWEPRQAVRRLGLAAVPGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFG 105
Query: 158 FVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189
FVT S +EA AI DG V I+I L
Sbjct: 106 FVTYTSTDEAAAAITGMDGKVCCANFVISIGL 137
>gi|4850347|dbj|BAA77714.1| RNA-binding protein [Anabaena variabilis]
Length = 103
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T SL VFAE G+V ++ DR T R RGFGFV MGS E AI
Sbjct: 3 VYVGNLSYDVTEDSLNPVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|209735756|gb|ACI68747.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 81
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE FA+ G +A +++ D+ T RSRGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAK 60
Query: 169 EAIRLFDGSVSADGICIAIVLI 190
+A+ +G S D I + + +
Sbjct: 61 DALEGMNGK-SVDLIFVVLFCV 81
>gi|121583148|ref|YP_973589.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120596410|gb|ABM39847.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 148
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY++ L + F + GTV SA+++ +R T RS+GFGFV M + +A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGTVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|17230420|ref|NP_486968.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75907197|ref|YP_321493.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|81818505|sp|Q44554.3|RBPB_NOSS1 RecName: Full=Putative RNA-binding protein RbpB
gi|304057|gb|AAA67898.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|801736|dbj|BAA09050.1| RNA-binding protein RbpB [Anabaena variabilis]
gi|17132022|dbj|BAB74627.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75700922|gb|ABA20598.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 103
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T SL VFAE G+V ++ DR T R RGFGFV MGS E AI
Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|395513325|ref|XP_003760877.1| PREDICTED: cold-inducible RNA-binding protein [Sarcophilus
harrisii]
Length = 172
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G +A +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|46115998|ref|XP_384017.1| hypothetical protein FG03841.1 [Gibberella zeae PH-1]
Length = 1163
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A++YVGNL ++ T SL F + G + + ++ DR T RSRGFGFVT GS +EA+ AI
Sbjct: 2 SAKVYVGNLGWNTTDDSLRNAFQDYGQILDSIVMRDRDTGRSRGFGFVTFGSSQEAETAI 61
>gi|125536731|gb|EAY83219.1| hypothetical protein OsI_38428 [Oryza sativa Indica Group]
Length = 257
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L Y SL + FA G V A+I+ DR T RSRGFGF+T S EEA AI
Sbjct: 30 SSKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAI 89
Query: 172 RLFDG 176
DG
Sbjct: 90 TALDG 94
>gi|406883357|gb|EKD30966.1| hypothetical protein ACD_77C00438G0003 [uncultured bacterium]
Length = 117
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL +++ + L E+FAE G ++SA+++ DR T +SRGFGFV M + EAK+AI
Sbjct: 3 IFISNLSWAVRDADLRELFAEYGEISSAKVITDRETGKSRGFGFVEMPTEAEAKKAIEEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
D DG I++ + +P
Sbjct: 63 D-QAEYDGKVISVNVAKP 79
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A++YVGNL ++ T +L + F+E G + + ++ DR T RSRGFGFVT G+ EEA AI
Sbjct: 2 SAKVYVGNLSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAI 61
>gi|374290274|ref|YP_005037327.1| putative RNA-binding protein [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
gi|358377066|gb|AEU09254.1| putative RNA-binding protein [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
Length = 89
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEA 170
+LYVGNL Y MT L E F G V +A+I++D T RS+GFGF+ M + E AK+A
Sbjct: 4 TKLYVGNLSYDMTEQELKEYFESIGEVINAKIIFDESTSNKRSKGFGFIEMSNEENAKQA 63
Query: 171 IRLFDGS 177
I +G+
Sbjct: 64 IEKLNGT 70
>gi|300123103|emb|CBK24110.2| unnamed protein product [Blastocystis hominis]
Length = 372
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A L+V +LP+ M S L +F GT+ SA++ D+ T S+GFGFV+ S E A+EA
Sbjct: 282 EGANLFVYHLPHEMADSDLTTLFVPYGTILSAKVYVDKQTGESKGFGFVSFNSFEAAQEA 341
Query: 171 IRLFDG 176
IR +G
Sbjct: 342 IRHMNG 347
>gi|6911142|gb|AAF31402.1| putative glycine-rich RNA binding protein 1 [Catharanthus roseus]
Length = 137
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A++D R +VG L ++ T SL+E F++ G V ++I+ DR T RSRGFGFVT G +
Sbjct: 1 MASADVEFRCFVGGLAWATTDQSLSEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEK 60
Query: 166 EAKEAIRLFDGSVSADGICIAI 187
K+AI +G + DG + +
Sbjct: 61 SMKDAIEGMNGQ-TLDGRNVTV 81
>gi|359463045|ref|ZP_09251608.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
Length = 90
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L+ VFAE GTV SA++ DR T R RGFGFV MG E +AI
Sbjct: 3 IYVGNLSYDVTEKDLSTVFAEYGTVKSAKLPTDRETGRIRGFGFVEMGDDTEEAKAIDEL 62
Query: 175 DGS 177
+G+
Sbjct: 63 EGA 65
>gi|414079549|ref|YP_007000973.1| glycine-rich RNA-binding protein [Anabaena sp. 90]
gi|413972828|gb|AFW96916.1| glycine-rich RNA-binding protein [Anabaena sp. 90]
Length = 99
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y + L VFAE GTV A++ DR T R RGFGFV M S E + AI
Sbjct: 3 IYVGNLSYQVAEEDLKRVFAEYGTVKKAQLPIDRETGRVRGFGFVEMSSDAEEQAAIAAL 62
Query: 175 DGS 177
DGS
Sbjct: 63 DGS 65
>gi|425461431|ref|ZP_18840909.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9808]
gi|389825716|emb|CCI24327.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9808]
Length = 100
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T+ +L EVFAE GTV+ + DR T + RGFGFV M S EE AI
Sbjct: 3 IYVGNLVYDVTTEALQEVFAEYGTVSRVYLPVDRETGKMRGFGFVEMSSDEEEAIAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|340379888|ref|XP_003388457.1| PREDICTED: RNA-binding protein 24-like [Amphimedon queenslandica]
Length = 214
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+L+VG LPY T+ +L + FA+ G + A +++DRVT +S+G+GFVTM E+A++A
Sbjct: 17 KLFVGGLPYHTTNETLYDFFAQFGDIEEAVVIHDRVTSKSKGYGFVTMKHKEDAEKA 73
>gi|407033602|gb|EKE36900.1| RNA recognition motif (RRM, RBD, or RNP domain) containing protein
[Entamoeba nuttalli P19]
Length = 136
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
RLY+G+L YS+T SL F + GTV ++V DR + RS+GFGFVT E+AK+AI
Sbjct: 3 RLYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAI 60
>gi|374384996|ref|ZP_09642507.1| hypothetical protein HMPREF9449_00893 [Odoribacter laneus YIT
12061]
gi|373227054|gb|EHP49375.1| hypothetical protein HMPREF9449_00893 [Odoribacter laneus YIT
12061]
Length = 100
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL Y++ S L ++F E G ++SA+++ DR + RSRGFGFV M S E ++AI
Sbjct: 3 IYVSNLSYAVNDSDLRDLFGEYGEISSAKVIMDRESGRSRGFGFVEMPSDTEGQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ V DG I + + +P
Sbjct: 63 N-QVEYDGKVINVNVAKP 79
>gi|168702594|ref|ZP_02734871.1| RNA-binding region RNP-1 [Gemmata obscuriglobus UQM 2246]
Length = 144
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
LYVGNLP++ T + L ++F GTV A++V DR T RSRGFGFV M S A EAI
Sbjct: 6 LYVGNLPFTTTQADLEQLFGNYGTVTKAQVVSDRETGRSRGFGFVEMSS--GADEAI 60
>gi|410924411|ref|XP_003975675.1| PREDICTED: cold-inducible RNA-binding protein-like [Takifugu
rubripes]
Length = 170
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L++G L + SLAE F + GT+ +++ D+ T RSRGFGFV SVE+AK
Sbjct: 2 SDEG-KLFIGGLSFETNEESLAEAFGKYGTIEKVDVIRDKETGRSRGFGFVKYESVEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMTAMNGK-SLDGRAIRV 78
>gi|118487563|gb|ABK95608.1| unknown [Populus trichocarpa]
Length = 133
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G LP+S +L + F+ G V A ++ DR T RSRGFGFV SVE A EA+
Sbjct: 35 SSKLFIGGLPWSTDDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEAL 94
Query: 172 RLFDG 176
DG
Sbjct: 95 SAMDG 99
>gi|34785785|gb|AAH57481.1| Cirbp protein [Danio rerio]
Length = 121
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 118 GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
G L Y T SL E F++ GT+A +++ DR TDRSRGFGFVT + E+AK+A+ +G
Sbjct: 3 GGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGK 62
Query: 178 VSADGICIAI 187
DG I +
Sbjct: 63 -QVDGRMIRV 71
>gi|167382576|ref|XP_001736171.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901525|gb|EDR27604.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 697
Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 27 IPTNH-LPSLFKTKSPKPL-KLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84
IPT H P++ K K L +L+K N L DG + DS+D+
Sbjct: 108 IPTKHETPTIKKKKVSSSLDELKKIANERRPKLD--------------DGKKKKTDSEDD 153
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASD----EAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q EE+EE E+E + + D E R+Y+ NLP++ T + + F G +A
Sbjct: 154 QNNQQMEEDEEMINEQEHQKSMDEIDVKDWEEGRIYITNLPFNCTEDDIRKEFDRFGNIA 213
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS-VSADGICIAIVLIEPFNCQHFG 199
+ D++T +S+GFGFV ++A +A D + + + +P++ Q G
Sbjct: 214 EIHLPIDKITKKSKGFGFVLFVVPQDAVKACNEMDNKFIKGRIVHVTYAKADPYSSQQTG 273
Query: 200 NGR 202
+
Sbjct: 274 ESK 276
Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI--VYDR 148
++EE++A+ + ++P++ + + LY+ NL + + +VF + G V + + D+
Sbjct: 495 KQEEDKAITKTDQPELV-EEGSKTLYIKNLSFKTKEDVIRKVFEKCGRVLAVTLSKTKDK 553
Query: 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192
+++ GFGFV E+A AI+ G V DG + I + +P
Sbjct: 554 KVEKNSGFGFVEYARHEDAINAIKTLQGKV-IDGHAVQIEISQP 596
>gi|222612603|gb|EEE50735.1| hypothetical protein OsJ_31052 [Oryza sativa Japonica Group]
Length = 118
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G + Y SL E FA G V A ++ DR T RSRGFGFVT S +EA AI
Sbjct: 30 SSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAI 89
Query: 172 RLFDGSV 178
DG V
Sbjct: 90 TGMDGKV 96
>gi|262199927|ref|YP_003271136.1| RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
gi|262083274|gb|ACY19243.1| RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Length = 207
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
++LYVGNL YS T +L VF E G V S I+ DR T RSRGF FV M S + A+EA
Sbjct: 2 GSKLYVGNLSYSTTEEALRSVFEEGGKEVRSVAIILDRETGRSRGFAFVQMASEDAAREA 61
Query: 171 IRLFDGSVSADGICIAIV 188
+ DG DG + I
Sbjct: 62 MESLDGR-ELDGRQMRIT 78
>gi|260892116|ref|YP_003238213.1| RNP-1 like RNA-binding protein [Ammonifex degensii KC4]
gi|260864257|gb|ACX51363.1| RNP-1 like RNA-binding protein [Ammonifex degensii KC4]
Length = 87
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP+S + LAE+F+ G V S+ I+ DR T RSRGFGFV + E+A+ IR
Sbjct: 5 LYVGNLPWSTQAEELAEIFSAYGEVLSSRIIVDRQTGRSRGFGFVEVRD-EDAEAMIRAL 63
Query: 175 DGS 177
+G+
Sbjct: 64 NGA 66
>gi|34535789|dbj|BAC87434.1| unnamed protein product [Homo sapiens]
Length = 135
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSV 178
K+A+ +G V
Sbjct: 61 KDAMMAMNGKV 71
>gi|304376936|gb|ACI70007.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 82
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE FA+ G +A +++ D+ T RSRGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAK 60
Query: 169 EAIRLFDGSVSADGICIAIVLI 190
+A+ +G S D + I +VL
Sbjct: 61 DALDGMNGK-SVD-LMIFVVLF 80
>gi|409991627|ref|ZP_11274872.1| RNP-1 like RNA-binding protein [Arthrospira platensis str. Paraca]
gi|291567422|dbj|BAI89694.1| RNA-binding protein [Arthrospira platensis NIES-39]
gi|409937517|gb|EKN78936.1| RNP-1 like RNA-binding protein [Arthrospira platensis str. Paraca]
Length = 181
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ RLYVGNLP + L VFAE G SA+++ DR T + RGFGFVT+ S + A + +
Sbjct: 2 SVRLYVGNLPKELDRKELQAVFAEEGDTISAKVITDRKTGKCRGFGFVTVQSDDLADQIV 61
Query: 172 RLFDGSVSAD 181
++G + D
Sbjct: 62 EKYNGFMFGD 71
>gi|167383625|ref|XP_001736605.1| cold-inducible RNA-binding protein [Entamoeba dispar SAW760]
gi|165900936|gb|EDR27150.1| cold-inducible RNA-binding protein, putative [Entamoeba dispar
SAW760]
Length = 138
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
RLY+G+L YS+T SL F + GTV ++V DR + RS+GFGFVT E+AK+AI
Sbjct: 3 RLYIGSLAYSVTDESLRAAFEKFGTVTDCKVVTDRESQRSKGFGFVTFEKDEDAKKAI 60
>gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L Y SSL E F++ G V A ++ DR T RSRGFGF++ S EEA A+
Sbjct: 39 SSKLFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAM 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QAMDG 103
>gi|400597074|gb|EJP64818.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 769
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 77 VTEDSQDEPETEQEEE----EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEV 132
V E+S+ E EE + E V PK A ++E L+V +LP ++T+ SLAE
Sbjct: 3 VAEESKKRLRPEIEEALAAMPDSETVAAPA-PKKARTEERRSLFVRSLPPNVTNESLAEF 61
Query: 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
F+E V A +V D+ T SRGFGFVT+ ++AK+A +FD
Sbjct: 62 FSEYFPVKHATVVIDQQTKESRGFGFVTLADADDAKQAQIVFD 104
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+SD + ++V NLP++ L F+ G V A +V D+ TDR G FV E+A
Sbjct: 314 SSDNSCTIFVRNLPFTTNDEHLKSFFSSFGNVRYARVVMDKATDRPAGTAFVCFYQEEDA 373
Query: 168 KEAIR 172
K I+
Sbjct: 374 KTCIK 378
Score = 40.0 bits (92), Expect = 0.72, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYD 147
++ +E E + ++P + +L V NLP+S+ S L +F G V A++ +
Sbjct: 121 RQRKEATEGAQPRQKPGKPEFEPTPKLIVRNLPWSIRNSEQLGHLFRSYGKVKFADLPKN 180
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
+ + +GFGFVT+ + A++A+ +G DG +A+
Sbjct: 181 K--GKLKGFGFVTLRGKKNAEKALEGINGK-EIDGRTLAV 217
>gi|418530958|ref|ZP_13096878.1| RNA recognition motif-containing protein [Comamonas testosteroni
ATCC 11996]
gi|371452037|gb|EHN65069.1| RNA recognition motif-containing protein [Comamonas testosteroni
ATCC 11996]
Length = 83
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL Y++ S +L F G V +A+I+ DR T RSRGFGFV MG+ E+A++AI
Sbjct: 5 LYVTNLSYTVDSDALRAHFGSCGDVVAADIIMDRETGRSRGFGFVEMGTQEQAQKAIETL 64
Query: 175 DGSVSADGICIAIVLIEP 192
+ G + + L P
Sbjct: 65 N-DQPLGGRALGVALARP 81
>gi|302340505|ref|YP_003805711.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
gi|301637690|gb|ADK83117.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
Length = 88
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++YVGNL YS SL ++F + G V S I+ DR T +S+GFGFV M ++ A+ AI
Sbjct: 2 AKKIYVGNLNYSTREESLQDLFGQYGQVNSVNIITDRYTGQSKGFGFVEMEEMDAAEAAI 61
Query: 172 RLFDGSVSADG 182
DG+ S DG
Sbjct: 62 SALDGT-SLDG 71
>gi|224060337|ref|XP_002300149.1| predicted protein [Populus trichocarpa]
gi|222847407|gb|EEE84954.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G LP+S +L + F+ G V A ++ DR T RSRGFGFV SVE A EA+
Sbjct: 35 SSKLFIGGLPWSADDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEAL 94
Query: 172 RLFDG 176
DG
Sbjct: 95 SAMDG 99
>gi|168021263|ref|XP_001763161.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685644|gb|EDQ72038.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 110 DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D+A R LY+G L Y TS +L +F++ G + I YD+ T++SRGF FVT S+E AK
Sbjct: 140 DQAQRKLYIGGLSYDTTSDTLLNIFSQYGEIEEGAIAYDKNTNKSRGFAFVTFKSIEGAK 199
Query: 169 EAI 171
AI
Sbjct: 200 RAI 202
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 106 VAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+A+ D R L+V L + +S +L E F + G V A ++ D+ T +SRGFGF+T +
Sbjct: 45 IASKDPVHRKLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHM 104
Query: 165 EEAKEAIR 172
+ A A++
Sbjct: 105 DSAHRALK 112
>gi|16331614|ref|NP_442342.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|383323356|ref|YP_005384210.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326525|ref|YP_005387379.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383492409|ref|YP_005410086.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384437677|ref|YP_005652402.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|451815766|ref|YP_007452218.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|1001677|dbj|BAA10412.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|339274710|dbj|BAK51197.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|359272676|dbj|BAL30195.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275846|dbj|BAL33364.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359279016|dbj|BAL36533.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407960755|dbj|BAM53995.1| RNA-binding protein [Bacillus subtilis BEST7613]
gi|451781735|gb|AGF52704.1| RNA-binding protein [Synechocystis sp. PCC 6803]
Length = 151
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 114 RLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RLYVGNLP S+ +L EVFAEA V S +++ DR T + RGF FVT+ + E A E I
Sbjct: 4 RLYVGNLPKESIEREALQEVFAEANAVVSTKVIKDRKTGKCRGFAFVTVSTDEAADEFIE 63
Query: 173 LFDG 176
++G
Sbjct: 64 KYNG 67
>gi|158333760|ref|YP_001514932.1| RNA-binding domain-containing protein [Acaryochloris marina
MBIC11017]
gi|359463897|ref|ZP_09252460.1| RNA-binding region [Acaryochloris sp. CCMEE 5410]
gi|158304001|gb|ABW25618.1| RNA-binding region [Acaryochloris marina MBIC11017]
Length = 95
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L VFAE GTV SA++ DR T R RGFGFV M E +AI
Sbjct: 3 IYVGNLSYDVTEQDLNTVFAEYGTVKSAKLPTDRETGRVRGFGFVEMSDDAEETKAIEEL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|346322022|gb|EGX91621.1| ribosome biogenesis protein Nop4 [Cordyceps militaris CM01]
Length = 818
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEE-----EPKVAASDEAARLYVGNLPYSMTSSSLAE 131
V +DS+ E EE A+ + E PK A ++E L+V +LP ++T+ SLAE
Sbjct: 3 VADDSKKR--LRPEIEEALAAMPDSETIAAPSPKKARTEERRSLFVRSLPPNVTNESLAE 60
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
F+E V A +V D+ T SRGFGFVT+ ++AK+A + D +G I + + E
Sbjct: 61 FFSEYFPVKHATVVVDQQTKESRGFGFVTLADADDAKQAQTVLDKK-QWEGRSIRVEVAE 119
Query: 192 PFNCQHFGNG 201
P + G
Sbjct: 120 PRQRKELAEG 129
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+ +E + +SD + ++V NLP++ L F+ G + A +V D+ TDR G FV
Sbjct: 304 KRKEERNNSSDNSTTIFVRNLPFTTNDEKLKSFFSSFGNIRYARVVMDKATDRPAGTAFV 363
Query: 160 TMGSVEEAKEAIR 172
E+AK I+
Sbjct: 364 CFFEGEDAKACIK 376
Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYD 147
++ +E E E ++P + +L V NLP+S+ S L +F G + A++ D
Sbjct: 121 RQRKELAEGAERRQKPGKPEFEPTPKLIVRNLPWSIRNSEQLGHLFRSYGRIKFADLPKD 180
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
+ + +GFGFVT+ + A+ A+ +G DG +A+
Sbjct: 181 K--GKLKGFGFVTLRGKKNAENALEGVNGK-EIDGRTLAV 217
>gi|406896127|gb|EKD40506.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 92
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL Y ++ S L ++F E G V SA I+ D+ + +S+GFGFV M S EA+ A+
Sbjct: 2 KLYVGNLSYEISESDLKQMFEEFGKVGSASIIMDKYSGQSKGFGFVEMDSQTEAQSAMEA 61
Query: 174 FDG 176
+G
Sbjct: 62 LNG 64
>gi|406835833|ref|ZP_11095427.1| RNP-1 like RNA-binding protein [Schlesneria paludicola DSM 18645]
Length = 104
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL Y +T S L ++FA G V SA+++ DR T RS+GFGFV M + +A AI
Sbjct: 2 GKKLYVGNLSYGVTDSQLEQLFAAHGAVQSAQVIMDRETGRSKGFGFVEMSNAADADAAI 61
Query: 172 RLFDGSVSADGICIAIVLIEP 192
+G + DG + + P
Sbjct: 62 TALNG-MDNDGRALTVNEARP 81
>gi|427776717|gb|JAA53810.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 85
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
AS A R++VGNLP+++ L E F++ G VAS+ +++DR T S+GFGFVT G+
Sbjct: 2 ASRSALRIFVGNLPWTIGKKELREHFSQFGYVASSNVIFDRKTGMSKGFGFVTFGN 57
>gi|189347593|ref|YP_001944122.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
gi|189341740|gb|ACD91143.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
Length = 90
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNL Y++T S L E F E G V++A ++ D+ T RS+GFGFV M + EA EAI
Sbjct: 3 IYIGNLDYNVTESDLRETFGEFGEVSNASVITDKFTGRSKGFGFVEMPNNAEASEAI 59
>gi|427382637|ref|ZP_18879357.1| hypothetical protein HMPREF9447_00390 [Bacteroides oleiciplenus YIT
12058]
gi|425729882|gb|EKU92733.1| hypothetical protein HMPREF9447_00390 [Bacteroides oleiciplenus YIT
12058]
Length = 130
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL ++ S SL E+F + G V SA I+ DR T RSRGFGFV M + E+ ++AI
Sbjct: 3 IYVANLSWNTNSDSLQELFTQYGEVTSAYIINDRETGRSRGFGFVEMPNDEDGQKAI--- 59
Query: 175 DGSVSAD--GICIAIVLIEP 192
DG D G IA+ + P
Sbjct: 60 DGLNETDFEGKTIAVSVARP 79
>gi|390941633|ref|YP_006405370.1| RRM domain-containing RNA-binding protein [Sulfurospirillum
barnesii SES-3]
gi|390194740|gb|AFL69795.1| RRM domain-containing RNA-binding protein [Sulfurospirillum
barnesii SES-3]
Length = 91
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGN+ Y MT L E+F+ G V+SA I+ DR T RS+GFGFV M + EAK AI
Sbjct: 3 IYVGNVKYEMTGDELKEMFSAYGEVSSARIISDRDTGRSKGFGFVEMPNDSEAKAAI 59
>gi|354568550|ref|ZP_08987714.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353540273|gb|EHC09750.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 106
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y + L EVFAE GTV ++ DR T R RGF FV M S EE + AI
Sbjct: 3 IYVGNLSYQVREEDLREVFAEYGTVKKVQLPTDRDTGRVRGFAFVEMQSDEEEERAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L Y SSL E F++ G V A ++ DR T RSRGFGF++ S EEA A+
Sbjct: 39 SSKLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASAL 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QAMDG 103
>gi|374372622|ref|ZP_09630284.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373235153|gb|EHP54944.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 90
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL YS TS L+E+F+ G V SA ++ D++T +SRGFGFV M A +AIR
Sbjct: 3 IFVSNLGYSFTSEDLSELFSSYGAVDSARVITDKITRQSRGFGFVEMPDENAAIKAIRDL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G++ DG I + P
Sbjct: 63 NGTMQ-DGRSIKVSEARP 79
>gi|356568734|ref|XP_003552565.1| PREDICTED: uncharacterized protein LOC100807155 [Glycine max]
Length = 244
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A+L+VG + YS SL E FA G V +++ DR T RSRGFGFVT + E+A AI
Sbjct: 39 SAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QGMDG 103
>gi|255645506|gb|ACU23248.1| unknown [Glycine max]
Length = 243
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A+L+VG + YS SL E FA G V +++ DR T RSRGFGFVT + E+A AI
Sbjct: 39 SAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QGMDG 103
>gi|449486948|ref|XP_004157450.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 173
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++++VG L Y L E F + G V A ++ DR T RSRGFGFVT G+ E+A AI
Sbjct: 39 SSKVFVGGLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QALDG 103
>gi|449439323|ref|XP_004137435.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 171
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++++VG L Y L E F + G V A ++ DR T RSRGFGFVT G+ E+A AI
Sbjct: 39 SSKVFVGGLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QALDG 103
>gi|417397313|gb|JAA45690.1| Putative rasgap sh3 binding protein rasputin [Desmodus rotundus]
Length = 218
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|221220658|gb|ACM08990.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|304376965|gb|ACI70202.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 161
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE F++ G ++ +++ DR T R RGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMDAMNGQ-SLDGRTIRV 78
>gi|212693232|ref|ZP_03301360.1| hypothetical protein BACDOR_02742 [Bacteroides dorei DSM 17855]
gi|237709988|ref|ZP_04540469.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265753639|ref|ZP_06088994.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|345515401|ref|ZP_08794903.1| hypothetical protein BSEG_02252 [Bacteroides dorei 5_1_36/D4]
gi|423231430|ref|ZP_17217833.1| hypothetical protein HMPREF1063_03653 [Bacteroides dorei
CL02T00C15]
gi|423238449|ref|ZP_17219565.1| hypothetical protein HMPREF1065_00188 [Bacteroides dorei
CL03T12C01]
gi|423246019|ref|ZP_17227092.1| hypothetical protein HMPREF1064_03298 [Bacteroides dorei
CL02T12C06]
gi|212664337|gb|EEB24909.1| hypothetical protein BACDOR_02742 [Bacteroides dorei DSM 17855]
gi|229436034|gb|EEO46111.1| hypothetical protein BSEG_02252 [Bacteroides dorei 5_1_36/D4]
gi|229456081|gb|EEO61802.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263235353|gb|EEZ20877.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|392627195|gb|EIY21231.1| hypothetical protein HMPREF1063_03653 [Bacteroides dorei
CL02T00C15]
gi|392637004|gb|EIY30880.1| hypothetical protein HMPREF1064_03298 [Bacteroides dorei
CL02T12C06]
gi|392648132|gb|EIY41822.1| hypothetical protein HMPREF1065_00188 [Bacteroides dorei
CL03T12C01]
Length = 81
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y++ L V E GTVAS +++ DR T RS+GF FV M + EAKEAI+
Sbjct: 3 LYIGNLNYNVREGDLRGVMEEYGTVASVKLITDRETRRSKGFAFVEMPNDGEAKEAIKQL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|209737234|gb|ACI69486.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 146
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + +SL E F++ G +A ++V DR T RSRGFGFVT + E+AK
Sbjct: 2 SDEG-KLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMAAMNGK-SVDGRMIRV 78
>gi|198285593|gb|ACH85335.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219546|gb|ACM08434.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 160
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE F++ G ++ +++ DR T R RGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMDAMNGQ-SLDGRTIRV 78
>gi|15239505|ref|NP_200911.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
gi|9759450|dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana]
gi|16974556|gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|21928059|gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|225879144|dbj|BAH30642.1| hypothetical protein [Arabidopsis thaliana]
gi|332010031|gb|AED97414.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
Length = 309
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G + YSM SL E F + G V ++ DR T RSRGFGFVT S E A AI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QALDG 103
>gi|197632397|gb|ACH70922.1| elongation factor-1 delta-1 [Salmo salar]
Length = 203
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + +SL E F++ G +A ++V DR T RSRGFGFVT + E+AK
Sbjct: 2 SDEG-KLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMAAMNGK-SVDGRMIRV 78
>gi|359457481|ref|ZP_09246044.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
Length = 137
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 114 RLYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RLY+GNLP + LA +F AE G + S ++V DR T + RGFGFVT+ + E+A + I
Sbjct: 4 RLYIGNLPKELDRDELAALFTAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQVIA 63
Query: 173 LFDGSVSADG---ICIAIVLIEPFNCQHFGN 200
+G V D I A+ + N Q GN
Sbjct: 64 KLNGHVFKDNALKIEKALPKSKEANNQGAGN 94
>gi|209523059|ref|ZP_03271616.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376001688|ref|ZP_09779547.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|423062488|ref|ZP_17051278.1| putative RNA-binding region protein [Arthrospira platensis C1]
gi|209496646|gb|EDZ96944.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375329917|emb|CCE15300.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|406716396|gb|EKD11547.1| putative RNA-binding region protein [Arthrospira platensis C1]
Length = 174
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + L VFAE G SA+++ DR T + RGFGFVT+ S + A + +
Sbjct: 4 RLYVGNLPKELDRKELQAVFAEEGDTISAKVITDRKTGKCRGFGFVTVQSDDLADQIVEK 63
Query: 174 FDG 176
++G
Sbjct: 64 YNG 66
>gi|406994267|gb|EKE13283.1| hypothetical protein ACD_13C00045G0007 [uncultured bacterium]
Length = 134
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
RL+V LP+S T L +F+E+GTV SA ++ D++T +S+GFGFV M + EEA +AI
Sbjct: 4 RLFVAGLPFSTTQDELKTLFSESGTVVSATVIMDKMTGQSKGFGFVEMETTEEAAKAI 61
>gi|434386836|ref|YP_007097447.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus PCC
6605]
gi|428017826|gb|AFY93920.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus PCC
6605]
Length = 184
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 114 RLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RLYVGNLP S + L VFA+AG + S +++ DR T + RGFGFVT+ + E+A + I
Sbjct: 4 RLYVGNLPKSDVEREELQTVFADAGELVSVKVIKDRKTGKCRGFGFVTVETDEQADQIIE 63
Query: 173 LFDGSV 178
++G++
Sbjct: 64 KYNGAM 69
>gi|78185978|ref|YP_374021.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78165880|gb|ABB22978.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 99
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +Y+GNLPYS++ L + F++ G V SA I+ D+ + RS+GFGFV M S E +
Sbjct: 7 DLKMNIYIGNLPYSVSEDDLRDAFSQFGQVDSANIIMDKFSGRSKGFGFVDMSSDEAGRA 66
Query: 170 AI 171
AI
Sbjct: 67 AI 68
>gi|185133178|ref|NP_001117016.1| hyperosmotic glycine rich protein [Salmo salar]
gi|28173040|gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 205
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE F++ G ++ +++ DR T R RGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMDAMNGQ-SLDGRTIRV 78
>gi|406834935|ref|ZP_11094529.1| RNP-1 like RNA-binding protein [Schlesneria paludicola DSM 18645]
Length = 123
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL Y+ T+ L E+F++ G V+SA++V DR T RSRGFGFV M EA AI
Sbjct: 5 LYVGNLSYNCTADDLRELFSQHGNVSSAQVVSDRETGRSRGFGFVEMSDGGEA--AIGAL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|365875472|ref|ZP_09415000.1| RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442588736|ref|ZP_21007546.1| RNA-binding protein [Elizabethkingia anophelis R26]
gi|365756731|gb|EHM98642.1| RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442561494|gb|ELR78719.1| RNA-binding protein [Elizabethkingia anophelis R26]
Length = 93
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ N+ YS+ S L E+FA G + SA+I+ DR T RSRGFGFV M + +EA AI
Sbjct: 3 IFISNINYSVKESQLEELFASYGAIQSAKIIMDRETGRSRGFGFVEMPNNDEANTAIESL 62
Query: 175 DGSV 178
+G++
Sbjct: 63 NGAL 66
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ ++YVGNL +S T +L E F+E G V + ++ DR T RSRGFGFVT S +EA+ AI
Sbjct: 2 STKVYVGNLSWSTTDDTLREAFSEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAAI 61
>gi|239813338|ref|YP_002942248.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239799915|gb|ACS16982.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 137
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL YS+ + L + F E G++ SA+++ +R T RS+GFGFV MG+ EA A+
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGSIVSAKVMMERDTGRSKGFGFVEMGTDAEALAAVEA 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|126660168|ref|ZP_01731286.1| RNA binding protein [Cyanothece sp. CCY0110]
gi|126618533|gb|EAZ89284.1| RNA binding protein [Cyanothece sp. CCY0110]
Length = 98
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +TS L EVF+E GTV + DR T R RGFGFV M S +E AI
Sbjct: 3 IYVGNLVYDVTSEDLTEVFSEYGTVKRVSLPTDRETGRPRGFGFVEMESDDEETAAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|320102269|ref|YP_004177860.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
gi|319749551|gb|ADV61311.1| RNP-1 like RNA-binding protein [Isosphaera pallida ATCC 43644]
Length = 129
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + T +L ++F+E G V SA+I+ DR T+RSRGFGF+ M S A EAI
Sbjct: 5 KLYVGNLTFDTTEDNLIDLFSEYGEVVSAQIIIDRETNRSRGFGFIEMSS--GADEAINA 62
Query: 174 FDG 176
G
Sbjct: 63 LHG 65
>gi|449477140|ref|XP_004154942.1| PREDICTED: uncharacterized LOC101218446 [Cucumis sativus]
Length = 287
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E+++++VG + +S SL E F + G V A ++ DR T RSRGFGFVT S EEA A
Sbjct: 41 ESSKVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSA 100
Query: 171 IRLFDG 176
I+ DG
Sbjct: 101 IQALDG 106
>gi|255639378|gb|ACU19985.1| unknown [Glycine max]
Length = 142
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SD R++V NL + + + +L +F E G V A +YDR + RSRGFGFVT S +E
Sbjct: 55 SDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARAIYDRESGRSRGFGFVTFSSPDEVN 114
Query: 169 EAIRLFDGSVSADGICIAIVLIE 191
AI+ +G V +G I + L +
Sbjct: 115 SAIQSLNG-VDLNGRAIRVSLAD 136
>gi|440684828|ref|YP_007159623.1| RNP-1 like RNA-binding protein [Anabaena cylindrica PCC 7122]
gi|428681947|gb|AFZ60713.1| RNP-1 like RNA-binding protein [Anabaena cylindrica PCC 7122]
Length = 102
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T +L VFAE G+V ++ DR T + RGFGFV MG+ EE AI
Sbjct: 3 IYVGNLSYEVTQDNLTAVFAEYGSVKRVQLPTDRETGKLRGFGFVEMGTDEEETTAIDAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|194385376|dbj|BAG65065.1| unnamed protein product [Homo sapiens]
Length = 142
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSV 178
K+A+ +G V
Sbjct: 61 KDAMMAMNGKV 71
>gi|160890916|ref|ZP_02071919.1| hypothetical protein BACUNI_03361 [Bacteroides uniformis ATCC 8492]
gi|270295897|ref|ZP_06202097.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317479664|ref|ZP_07938788.1| RNA recognition domain-containing protein [Bacteroides sp. 4_1_36]
gi|423303831|ref|ZP_17281830.1| hypothetical protein HMPREF1072_00770 [Bacteroides uniformis
CL03T00C23]
gi|423307449|ref|ZP_17285439.1| hypothetical protein HMPREF1073_00189 [Bacteroides uniformis
CL03T12C37]
gi|156859915|gb|EDO53346.1| hypothetical protein BACUNI_03361 [Bacteroides uniformis ATCC 8492]
gi|270273301|gb|EFA19163.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316904165|gb|EFV25995.1| RNA recognition domain-containing protein [Bacteroides sp. 4_1_36]
gi|392687162|gb|EIY80459.1| hypothetical protein HMPREF1072_00770 [Bacteroides uniformis
CL03T00C23]
gi|392690058|gb|EIY83329.1| hypothetical protein HMPREF1073_00189 [Bacteroides uniformis
CL03T12C37]
Length = 81
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL Y++ S L +V E GTV S +++ DR T+RS+GF FV M EA++AI
Sbjct: 3 MYIGNLSYNVRESDLRQVMEEYGTVESVKLIMDRNTNRSKGFAFVEMPEAAEAQQAINKL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|456864553|gb|EMF82952.1| hypothetical protein LEP1GSC188_2989 [Leptospira weilii serovar
Topaz str. LT2116]
Length = 86
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y + +L ++F GTV S +I+ D+ + +S+GFGFV M + +EA +AI+
Sbjct: 5 IYVGNLSYDLNEGTLGDLFRVHGTVNSVKIITDQYSGKSKGFGFVEMSNKDEADKAIKDL 64
Query: 175 DG 176
DG
Sbjct: 65 DG 66
>gi|209734900|gb|ACI68319.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|303657347|gb|ADM15872.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 114
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE F++ G ++ +++ DR T R RGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMDAMNGQ-SLDGRTIRV 78
>gi|213513270|ref|NP_001133190.1| hyperosmotic glycine rich protein [Salmo salar]
gi|197632401|gb|ACH70924.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 126
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + T SLAE F++ G ++ +++ DR T R RGFGFV + E+AK
Sbjct: 2 SDEG-KLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMDAMNGQ-SLDGRTIRV 78
>gi|449441097|ref|XP_004138320.1| PREDICTED: uncharacterized protein LOC101218446 [Cucumis sativus]
Length = 232
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E+++++VG + +S SL E F + G V A ++ DR T RSRGFGFVT S EEA A
Sbjct: 41 ESSKVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSA 100
Query: 171 IRLFDG 176
I+ DG
Sbjct: 101 IQALDG 106
>gi|297793663|ref|XP_002864716.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
gi|297310551|gb|EFH40975.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
Length = 327
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G + YSM SL E F + G V ++ DR T RSRGFGFVT S E A AI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVETRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QALDG 103
>gi|255075095|ref|XP_002501222.1| predicted protein [Micromonas sp. RCC299]
gi|226516486|gb|ACO62480.1| predicted protein [Micromonas sp. RCC299]
Length = 199
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ ++Y GNL + M L ++ E GTV A ++ DR T+RSRGFGFVTM +V EA+E
Sbjct: 117 DGRKVYFGNLSWGMDHLDLQDLCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEV 176
Query: 171 IRLFDG 176
+ +G
Sbjct: 177 VNQLNG 182
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E+ + +E +LYVGNL + +T+ SLA+VF + G + +V D T RSRGFGFVT+
Sbjct: 6 EDGAAVSGEEGVKLYVGNLSWGVTNDSLADVFNQYGA-SDVTVVTDMNTGRSRGFGFVTV 64
Query: 162 GSVEEAKEAIRLFDGSVSADGICIAI 187
A I DG+ DG I +
Sbjct: 65 PDQAVADACIAALDGA-DVDGRAIRV 89
>gi|408792487|ref|ZP_11204097.1| hypothetical protein LEP1GSC017_0784 [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408463897|gb|EKJ87622.1| hypothetical protein LEP1GSC017_0784 [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 87
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +YVGNL Y MT + L E+F+ G V+SA+I+ D+ T S+GFGF+ M EA AI
Sbjct: 2 SVNIYVGNLSYEMTENKLNELFSAHGAVSSAKIITDQYTGGSKGFGFIEMKERREADNAI 61
Query: 172 RLFDG 176
+G
Sbjct: 62 NDLNG 66
>gi|357421081|ref|YP_004928530.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803591|gb|AER40705.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 89
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL Y MT L E F G V A+I++D T RS+GFGF+ M + E AK+AI
Sbjct: 5 KLYVGNLSYEMTEQELKEHFESIGEVTHAKIIFDESTSNKRSKGFGFIEMSNEENAKKAI 64
Query: 172 RLFDGS 177
+G+
Sbjct: 65 EKLNGT 70
>gi|428307295|ref|YP_007144120.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428248830|gb|AFZ14610.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 177
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 114 RLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RLYVGNLP + L +FAEAG S +++ DR T + RGFGFVT+ + E+A + I
Sbjct: 4 RLYVGNLPKEDVERQDLQAIFAEAGDFVSTKVIKDRKTGKCRGFGFVTVNTDEQADQIIE 63
Query: 173 LFDGSVSAD 181
F+G + D
Sbjct: 64 QFNGYMFQD 72
>gi|430747489|ref|YP_007206618.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430019209|gb|AGA30923.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 118
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A RLYVGNL +S+TS L +F G V+ +++V DR T RSRGFGFV M + E AI
Sbjct: 2 AKRLYVGNLGFSVTSEELQALFESFGAVSMSQVVEDRETGRSRGFGFVEMVNDAEGDAAI 61
Query: 172 RLFDG 176
+ DG
Sbjct: 62 QGLDG 66
>gi|197128619|gb|ACH45117.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128620|gb|ACH45118.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128623|gb|ACH45121.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128625|gb|ACH45123.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128627|gb|ACH45125.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128628|gb|ACH45126.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPY++ S+ LA + E G+ E++Y R T RSRGF FVTM S+E+ I
Sbjct: 108 KLYFGNLPYNVDSAQLAGIIQEYGSPEMVEVLYHRETGRSRGFAFVTMSSIEDCNAVIEN 167
Query: 174 FDGS 177
D S
Sbjct: 168 LDES 171
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +S TS SL + F E G V A ++YD T +SRG+GFV + E + A+
Sbjct: 199 KLFVGNLSWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVS 258
Query: 174 FDGSVSADGICIAIVLIE 191
DG V +G + + L E
Sbjct: 259 LDG-VELEGRALRVSLAE 275
>gi|158338245|ref|YP_001519422.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|158308486|gb|ABW30103.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 137
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 114 RLYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RLYVGNLP + LA +F AE G + S ++V DR T + RGFGFVT+ + E+A + I
Sbjct: 4 RLYVGNLPKELDRDELAALFTAEVGELTSTKVVTDRKTGKCRGFGFVTVETDEQADQVIA 63
Query: 173 LFDGSVSADG---ICIAIVLIEPFNCQHFGN 200
+G + D I A+ + N Q GN
Sbjct: 64 KLNGHMFKDNALKIEKALPKSKEANSQGAGN 94
>gi|209154454|gb|ACI33459.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 206
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + +SL E F++ G +A ++V DR T RSRGFGFVT + E+AK
Sbjct: 2 SDEG-KLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMAAMNGK-SVDGRMIRV 78
>gi|299751777|ref|XP_001830476.2| glycine-rich RNA binding protein [Coprinopsis cinerea okayama7#130]
gi|298409530|gb|EAU91356.2| glycine-rich RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 142
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A++YVGNL ++ T SL + F++ G V + ++ DR T RSRGFGFVT + EEA AI
Sbjct: 2 SAKVYVGNLSWNTTDDSLRQAFSQYGNVLDSIVMRDRDTGRSRGFGFVTYSATEEADAAI 61
>gi|110597824|ref|ZP_01386107.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
gi|110340549|gb|EAT59032.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
Length = 90
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNL YS+T + L E F E G V+SA ++ D+ T RS+GFGFV M + EA AI
Sbjct: 3 IYIGNLDYSVTEADLRETFGEFGEVSSASVINDKFTGRSKGFGFVEMANDAEAASAI 59
>gi|428318646|ref|YP_007116528.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
gi|428242326|gb|AFZ08112.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
Length = 185
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + L EVFA G + +++ DR T + RGFGFVT+ + E+A + I
Sbjct: 4 RLYVGNLPKELDRQELQEVFAPEGESVTTKVITDRKTGKCRGFGFVTVLTDEQADQVIEK 63
Query: 174 FDG 176
++G
Sbjct: 64 YNG 66
>gi|224121390|ref|XP_002318570.1| predicted protein [Populus trichocarpa]
gi|222859243|gb|EEE96790.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG + + +SL E F + G V A I+ DR T RSRGFGFVT S EEA AI
Sbjct: 39 SSKLFVGGISFQTDDNSLKEAFDKYGNVVEARIIMDRETGRSRGFGFVTYTSSEEASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QALDG 103
>gi|145345423|ref|XP_001417211.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577438|gb|ABO95504.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 874
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 91 EEEEEEAVEEEEEPKVAASDEA----ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
E+EE +A E E + AA EA R++V NLPY+ T +AE+F + G + + I+
Sbjct: 308 EKEETDAAEPESKDVNAADMEALSETGRIFVRNLPYTATEEEVAELFEQFGKLTAVHILV 367
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
DR T RS+G +VT E+ +A+ DGS+
Sbjct: 368 DRSTKRSKGLAYVTFVIPEDGVKAMEAVDGSI 399
Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--------SRGFGFVT 160
SD+A ++V L + T L FA A S +I+ RV SRGFGFV
Sbjct: 659 SDDAVSIFVKGLDFGTTDKKLRSHFAAAAQRVSGQIIAARVVTHRGPGGKMLSRGFGFVE 718
Query: 161 MGSVEEAKEAIRLFDGSVSADGICIAIVL 189
+ AK + GS S DG + + L
Sbjct: 719 FDTPMVAKSVLTALQGS-SLDGKTLKLEL 746
>gi|395802857|ref|ZP_10482109.1| RNP-1 like RNA-binding protein [Flavobacterium sp. F52]
gi|395435298|gb|EJG01240.1| RNP-1 like RNA-binding protein [Flavobacterium sp. F52]
Length = 114
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+LP+S+ + L E F GTV S +I+ D+ T RS+GFGFV M + EA++AI
Sbjct: 3 IFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP--------FNCQHFGN 200
+G+V + G I + EP FN GN
Sbjct: 63 NGAVVS-GRTIVVNKSEPKPEGERRSFNNNRRGN 95
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGN+P ++++ L ++ E G V AE++YD+ + RSR F FVTM +VE+A A
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 174 FDGS 177
+G+
Sbjct: 121 LNGT 124
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++TS SL + F+E G SA++ T +S GFGFVT S E+ +
Sbjct: 156 DSPYKVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEA 215
Query: 170 AIRLFDGSV 178
AI F+ ++
Sbjct: 216 AISSFNNAL 224
>gi|334119206|ref|ZP_08493293.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
gi|333458677|gb|EGK87294.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
Length = 189
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + L EVFA G + +++ DR T + RGFGFVT+ + E+A + I
Sbjct: 4 RLYVGNLPKELDRQELQEVFAPEGESVTTKVITDRKTGKCRGFGFVTVLTDEQADQVIEK 63
Query: 174 FDG 176
++G
Sbjct: 64 YNG 66
>gi|384916047|ref|ZP_10016247.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
gi|384526575|emb|CCG92118.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
Length = 99
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP+ ++ + L E+F + G V ++ D++T +SRGF FVTM + + A+ AI
Sbjct: 5 RLYVGNLPFRISENDLRELFEQYGQVNEINLIVDKMTGQSRGFAFVTMETSQAAQSAIDS 64
Query: 174 FDG-SVSADGICI 185
+G S+S I +
Sbjct: 65 LNGTSISGRQIVV 77
>gi|90077754|dbj|BAE88557.1| unnamed protein product [Macaca fascicularis]
Length = 172
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|427723348|ref|YP_007070625.1| RNP-1 like RNA-binding protein [Leptolyngbya sp. PCC 7376]
gi|427355068|gb|AFY37791.1| RNP-1 like RNA-binding protein [Leptolyngbya sp. PCC 7376]
Length = 83
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++ L EVFA+ GTV + DR T+R RGFGFV M + E ++AI
Sbjct: 3 IYVGNLDYAVEEDDLKEVFADYGTVKRVYLPMDRETNRKRGFGFVEMANEGEEEKAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|183222158|ref|YP_001840154.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
gi|189912218|ref|YP_001963773.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167776894|gb|ABZ95195.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167780580|gb|ABZ98878.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
Length = 87
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +YVGNL Y MT + L E+F+ G V+SA+I+ D+ T S+GFGF+ M EA +AI
Sbjct: 2 STNIYVGNLSYEMTETKLNELFSVHGAVSSAKIITDQYTGGSKGFGFIEMKDRNEADKAI 61
Query: 172 RLFDG 176
+G
Sbjct: 62 SDLNG 66
>gi|37522494|ref|NP_925871.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
gi|35213495|dbj|BAC90866.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
Length = 195
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP +T L +FA AG V S +++ DR T + RGFGF+T+ + E A I
Sbjct: 4 RLYVGNLPEEVTRQELEAIFAPAGEVVSLKVITDRKTGKCRGFGFLTVSTPEAADSFIEQ 63
Query: 174 FDGSVSADGICIAIVLIEP 192
F+G VS + + + +P
Sbjct: 64 FNG-VSFKDVALRVEKAQP 81
>gi|359684840|ref|ZP_09254841.1| RNA-binding protein [Leptospira santarosai str. 2000030832]
gi|410451229|ref|ZP_11305247.1| hypothetical protein LEP1GSC068_3411 [Leptospira sp. Fiocruz
LV3954]
gi|418745408|ref|ZP_13301748.1| hypothetical protein LEP1GSC163_2960 [Leptospira santarosai str.
CBC379]
gi|418753643|ref|ZP_13309885.1| hypothetical protein LEP1GSC179_2849 [Leptospira santarosai str.
MOR084]
gi|421111541|ref|ZP_15572017.1| hypothetical protein LEP1GSC071_2776 [Leptospira santarosai str.
JET]
gi|422002647|ref|ZP_16349883.1| RNA-binding protein [Leptospira santarosai serovar Shermani str. LT
821]
gi|409965914|gb|EKO33769.1| hypothetical protein LEP1GSC179_2849 [Leptospira santarosai str.
MOR084]
gi|410015006|gb|EKO77120.1| hypothetical protein LEP1GSC068_3411 [Leptospira sp. Fiocruz
LV3954]
gi|410793870|gb|EKR91785.1| hypothetical protein LEP1GSC163_2960 [Leptospira santarosai str.
CBC379]
gi|410803151|gb|EKS09293.1| hypothetical protein LEP1GSC071_2776 [Leptospira santarosai str.
JET]
gi|417258738|gb|EKT88124.1| RNA-binding protein [Leptospira santarosai serovar Shermani str. LT
821]
gi|456873569|gb|EMF88944.1| hypothetical protein LEP1GSC005_1605 [Leptospira santarosai str.
ST188]
Length = 86
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y + +L ++F GTV S +IV D+ + +S+GFGFV M + +EA +AI+
Sbjct: 5 IYVGNLSYDLNEGTLGDLFRVHGTVNSVKIVTDQYSGKSKGFGFVEMPNKDEADKAIKDL 64
Query: 175 DGS 177
DG
Sbjct: 65 DGK 67
>gi|197128622|gb|ACH45120.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEESLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|374586124|ref|ZP_09659216.1| RNP-1 like RNA-binding protein [Leptonema illini DSM 21528]
gi|373874985|gb|EHQ06979.1| RNP-1 like RNA-binding protein [Leptonema illini DSM 21528]
Length = 102
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 38/62 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+ +S L +FA GTVA I DR T RSRGF FV M + EA EAI
Sbjct: 3 IYVGNLPFRASSDELQNIFAAHGTVARVTIPVDRETGRSRGFAFVEMPNDAEASEAINSL 62
Query: 175 DG 176
+G
Sbjct: 63 NG 64
>gi|392593259|gb|EIW82584.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 116
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A++YVGNL ++ T +L + F+ G V + ++ DR T RSRGFGFVT S +EA+ A
Sbjct: 2 NSAKIYVGNLSWNTTDDTLRQAFSTFGNVVDSVVMRDRDTGRSRGFGFVTYSSTQEAESA 61
Query: 171 IRLFDGSVSADGICIAIVLIEP 192
I + DG I + + P
Sbjct: 62 ISGLNDQ-DLDGRRIKVNIANP 82
>gi|430745977|ref|YP_007205106.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430017697|gb|AGA29411.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 130
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLPY T L ++F G V++ +++ D+ + RSRGFGFV M +EA+ AI
Sbjct: 5 IYVGNLPYDTTGDDLKQLFETYGAVSNGQVIIDKFSGRSRGFGFVEMDHDDEAQAAIDAL 64
Query: 175 DGS 177
+G+
Sbjct: 65 NGT 67
>gi|356526497|ref|XP_003531854.1| PREDICTED: uncharacterized protein LOC100818300 [Glycine max]
Length = 245
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A+L+VG + YS SL E FA G V +++ DR T RSRGFGF+T + E+A AI
Sbjct: 39 SAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QGMDG 103
>gi|119485999|ref|ZP_01620061.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
gi|119456774|gb|EAW37902.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
Length = 157
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + L +VF E G SA+++ DR T + RGFGFVT+ + E A + +
Sbjct: 4 RLYVGNLPKELERKELQDVFVEEGDSVSAKVITDRKTGKCRGFGFVTVQTDEIADQIVEK 63
Query: 174 FDG 176
++G
Sbjct: 64 YNG 66
>gi|327290660|ref|XP_003230040.1| PREDICTED: cold-inducible RNA-binding protein-like [Anolis
carolinensis]
Length = 176
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|197128630|gb|ACH45128.1| putative cold inducible RNA binding protein variant 2c [Taeniopygia
guttata]
Length = 175
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|428216940|ref|YP_007101405.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
gi|427988722|gb|AFY68977.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
Length = 154
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + L ++F E+G S +++ DR T R RGFGFVT+ + E A I
Sbjct: 4 RLYVGNLPAELDRQELEKIFNESGETFSLKVITDRKTGRCRGFGFVTVNTPEAADTVIDK 63
Query: 174 FDG 176
F+G
Sbjct: 64 FNG 66
>gi|410949903|ref|XP_003981656.1| PREDICTED: cold-inducible RNA-binding protein [Felis catus]
Length = 172
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G +A +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGN+P ++++ L ++ E G V AE++YD+ + RSR F FVTM +VE+A A
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 174 FDGS 177
+G+
Sbjct: 121 LNGT 124
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++TS SL + F+E G SA++ T +S GFGFVT S E+ +
Sbjct: 156 DSPYKVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEA 215
Query: 170 AIRLFDGSV 178
AI F+ ++
Sbjct: 216 AISSFNNAL 224
>gi|194337130|ref|YP_002018924.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309607|gb|ACF44307.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 90
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNL Y++T L + F+E G V SA I+ D+ + RS+GFGFV M + EA+EAI
Sbjct: 3 IYIGNLAYTVTEDDLRDAFSEFGQVESASIINDKFSGRSKGFGFVDMPNESEAREAI 59
>gi|345313668|ref|XP_001512332.2| PREDICTED: cold-inducible RNA-binding protein-like [Ornithorhynchus
anatinus]
Length = 270
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|452936|gb|AAB28794.1| 60 kda non-pathogenic specific antigen [Entamoeba histolytica, SAW
1734R, Peptide Partial, 273 aa]
Length = 273
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 27 IPTNH-LPSLFKTKSPKPL-KLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84
IPT H P++ K K L +L+K N L DG + DS+D+
Sbjct: 103 IPTKHETPTIKKKKVSSSLDELKKIANERRPKLD--------------DGKKKKTDSEDD 148
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASD----EAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q EE+EE E+E + + D E R+Y+ NLP++ T + F G +A
Sbjct: 149 QNNQQMEEDEEMINEQEHQKSMDEIDVKDWEEGRIYITNLPFNCTEDEFRKEFDRFGNIA 208
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS-VSADGICIAIVLIEPFNCQHFG 199
+ D++T +S+GFG V ++A +A D + + + P +CQ G
Sbjct: 209 EIHLPIDKITKKSKGFGKVLFVVPQDAVKACNEMDNKFIKGRIVHVTYAKASPISCQQTG 268
Query: 200 NGR 202
+
Sbjct: 269 ESK 271
>gi|299529236|ref|ZP_07042680.1| RNA recognition motif-containing protein [Comamonas testosteroni
S44]
gi|298722760|gb|EFI63673.1| RNA recognition motif-containing protein [Comamonas testosteroni
S44]
Length = 83
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
LYV NL YS+ S +L F G V +A+++ DR T RSRGFGFV MG+ E+A++AI
Sbjct: 5 LYVTNLGYSIDSEALRTHFGCCGDVVAADVIIDRDTGRSRGFGFVEMGTQEQAQKAI 61
>gi|146299063|ref|YP_001193654.1| RNP-1 like RNA-binding protein [Flavobacterium johnsoniae UW101]
gi|146153481|gb|ABQ04335.1| RNP-1 like RNA-binding protein [Flavobacterium johnsoniae UW101]
Length = 114
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+LP+S+ + L E F GTV S +I+ D+ T RS+GFGFV M + EA++AI
Sbjct: 3 IFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP--------FNCQHFGN 200
+G+V + G I + EP FN GN
Sbjct: 63 NGAVVS-GRTIVVNKSEPKPEGERRSFNNNRGGN 95
>gi|261749498|ref|YP_003257184.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497591|gb|ACX84041.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 90
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL Y MT L + F G V A+I++D T RS+GFGF+ M + E AK+AI
Sbjct: 5 KLYVGNLSYEMTEQELKKYFESIGEVTHAKIIFDESTSNKRSKGFGFIEMSNEENAKQAI 64
Query: 172 RLFDGS 177
+G+
Sbjct: 65 EKLNGT 70
>gi|256828609|ref|YP_003157337.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
gi|256577785|gb|ACU88921.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
Length = 85
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL +S T + L +F++ G V SA ++ DR T RSRGFGFV M E A++AI+
Sbjct: 3 IYVGNLSWSTTDADLKSLFSQYGEVTSAHVIEDRATGRSRGFGFVEMDD-EGARKAIQAV 61
Query: 175 DGS 177
+G+
Sbjct: 62 NGT 64
>gi|217966813|ref|YP_002352319.1| RNP-1 like RNA-binding protein [Dictyoglomus turgidum DSM 6724]
gi|217335912|gb|ACK41705.1| RNP-1 like RNA-binding protein [Dictyoglomus turgidum DSM 6724]
Length = 92
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 32/45 (71%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
LYVGNLP+S T L +FA GTV SA I+ DR T RS+GFGFV
Sbjct: 5 LYVGNLPWSTTEEELKNIFASHGTVYSARIISDRNTGRSKGFGFV 49
>gi|432101154|gb|ELK29438.1| Cold-inducible RNA-binding protein [Myotis davidii]
Length = 204
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|197128626|gb|ACH45124.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|149921891|ref|ZP_01910335.1| RNA-binding protein [Plesiocystis pacifica SIR-1]
gi|149817244|gb|EDM76721.1| RNA-binding protein [Plesiocystis pacifica SIR-1]
Length = 189
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG LP++M + L EVFAE G + A ++ DR T RSRGFGFVT E A +A+ L
Sbjct: 1 MFVGGLPWAMDNQRLKEVFAEFGALEDARVILDRETGRSRGFGFVTYVDEEGATKALGL- 59
Query: 175 DGSVSADGICIAI 187
DG DG I +
Sbjct: 60 DGQ-EVDGRRIRV 71
>gi|66576254|gb|AAY51685.1| RNA-binding protein [Chlorobium tepidum TLS]
Length = 90
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNL Y++T + L+ F E GTV+ A ++ D+ T RS+GFGFV M EA EAI
Sbjct: 3 IYIGNLDYNVTEADLSGAFGEFGTVSKANVIIDKFTGRSKGFGFVEMPDDAEANEAI 59
>gi|71897051|ref|NP_001026518.1| cold-inducible RNA-binding protein [Gallus gallus]
gi|53128363|emb|CAG31295.1| hypothetical protein RCJMB04_4m1 [Gallus gallus]
Length = 190
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|406929348|gb|EKD64949.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 106
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A L+VG LP+++ +L ++F G V S I+ DR T SRGFGFV M + E+AK+AI
Sbjct: 2 AKNLFVGGLPFTIAGEALEQLFGSVGQVQSVNIIKDRYTGNSRGFGFVEMVNDEDAKKAI 61
Query: 172 RLFDG-SVSADGICIAIVLIEPFNCQHFGNGR 202
+G ++ I + L +P + NGR
Sbjct: 62 EKLNGYNLEGRNIVVKEALPKP----TYTNGR 89
>gi|291514454|emb|CBK63664.1| RNA-binding proteins (RRM domain) [Alistipes shahii WAL 8301]
Length = 116
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV +L + +S L +F + G VASA ++ DR T RSRGFGFV M + EE ++AI
Sbjct: 3 IYVSHLSWGTSSEGLGNLFMQFGEVASANVITDRETGRSRGFGFVEMPNEEEGQKAIDQL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ S +G I + + P
Sbjct: 63 NGT-SFEGQTITVNVARP 79
>gi|441656594|ref|XP_003277032.2| PREDICTED: cold-inducible RNA-binding protein [Nomascus leucogenys]
Length = 144
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|417408518|gb|JAA50808.1| Putative rna-binding protein seb4 rrm superfamily, partial
[Desmodus rotundus]
Length = 193
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P+ + + +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT +
Sbjct: 18 PQATMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 77
Query: 164 VEEAKEAIRLFDGSVSADGICIAI 187
+++AK+A+ +G S DG I +
Sbjct: 78 IDDAKDAMMAMNGK-SVDGRQIRV 100
>gi|78189511|ref|YP_379849.1| RNA recognition motif-containing protein [Chlorobium
chlorochromatii CaD3]
gi|78171710|gb|ABB28806.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
chlorochromatii CaD3]
Length = 90
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNL YS+T + L + F + G V SA I+ D+ + RS+GFGFV M + EA+EAI
Sbjct: 3 IYIGNLAYSVTENDLRDAFGQFGQVESASIITDKFSGRSKGFGFVDMPNDSEAREAI 59
>gi|150024447|ref|YP_001295273.1| RNA-binding protein RbpA [Flavobacterium psychrophilum JIP02/86]
gi|149770988|emb|CAL42455.1| Putative RNA-binding protein RbpA [Flavobacterium psychrophilum
JIP02/86]
Length = 133
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+LP+S+ + L E F G V S +I+ D+ T RS+GFGFV M + EE ++AI
Sbjct: 3 IFVGSLPWSIEEADLRESFEAYGAVESVKIITDKFTGRSKGFGFVEMPNDEEGQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ + DG I + EP
Sbjct: 63 NGA-TVDGRAIVVNKSEP 79
>gi|449273022|gb|EMC82651.1| Cold-inducible RNA-binding protein [Columba livia]
Length = 153
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|410659225|ref|YP_006911596.1| RNA-binding region RNP-1 [Dehalobacter sp. DCA]
gi|410662211|ref|YP_006914582.1| RNA-binding region RNP-1 [Dehalobacter sp. CF]
gi|409021580|gb|AFV03611.1| RNA-binding region RNP-1 [Dehalobacter sp. DCA]
gi|409024567|gb|AFV06597.1| RNA-binding region RNP-1 [Dehalobacter sp. CF]
Length = 84
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNLP+S TS L E FA G V + I+ DR T RSRGFGFV + S E+A+
Sbjct: 5 LYVGNLPWSTTSEELTEYFARFGNVIGSRIITDRETGRSRGFGFVEVAS-EDAERLAEEL 63
Query: 175 DGS 177
+GS
Sbjct: 64 NGS 66
>gi|374299435|ref|YP_005051074.1| RNP-1 like RNA-binding protein [Desulfovibrio africanus str. Walvis
Bay]
gi|332552371|gb|EGJ49415.1| RNP-1 like RNA-binding protein [Desulfovibrio africanus str. Walvis
Bay]
Length = 100
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNLP+S + + ++F+ G V S ++ DR T R RGFGFV M E A+EAI
Sbjct: 2 AKKLYVGNLPFSASEDDIRDLFSTYGEVNSVSLITDRETGRLRGFGFVEMDD-EGAREAI 60
Query: 172 RLFDG 176
+ DG
Sbjct: 61 QSLDG 65
>gi|321460847|gb|EFX71885.1| hypothetical protein DAPPUDRAFT_93311 [Daphnia pulex]
Length = 81
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A ++VGN+PY ++ L +F+EAG V S IV DR T RSRGFGF S + A+ A+R
Sbjct: 2 ASVFVGNIPYGVSEDQLKAIFSEAGPVVSFRIVQDRETGRSRGFGFCEFQSPDSAQTAMR 61
Query: 173 LFDG 176
+G
Sbjct: 62 NLNG 65
>gi|145348372|ref|XP_001418624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578854|gb|ABO96917.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 151
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 84 EPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
+ +T E + ++ E P+ + R+Y GNL + M L ++ E G+V +
Sbjct: 43 QAQTAGERRDRPMRMDGERRPQRNRDADNRRVYFGNLSWGMDHLDLQDLCGEFGSVEDSR 102
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
++ DR T RSRGFGFVTM S EA E + +G DG + +
Sbjct: 103 LITDRETGRSRGFGFVTMSSEAEADEVVAQLNGQ-DVDGRVLRV 145
>gi|406985531|gb|EKE06283.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 83
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+L++GNL + +TS L FA GTV A ++ DR+T RSRGFGFV M + E+A +A+
Sbjct: 3 KLFIGNLSWEVTSDDLRAFFASFGTVIDAVVIMDRMTGRSRGFGFVEMETEEQANKAL 60
>gi|302810024|ref|XP_002986704.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
gi|300145592|gb|EFJ12267.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
Length = 730
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 76 QVTEDSQDEPETE-----QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLA 130
Q ++DS DE ETE Q++ + + EE + A + RL+V NL Y+ + LA
Sbjct: 183 QWSDDSDDEKETEGGAKPQQQADTGDRPGNEEAAQDVAETDTGRLFVRNLAYTTSEEELA 242
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
+F + G V ++ D+ T+RS+G+G+V EEA A+ D S+
Sbjct: 243 SLFGQYGEVVQVHLICDKETNRSKGYGYVGFTLPEEATRAMTELDNSI 290
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++R+ V NLP +T L E F G V A+++ R +SR FGFV S EEA+ A+
Sbjct: 4 SSRVCVKNLPTYVTDDKLREHFGAKGQVTDAKVMRTR-DGKSRRFGFVGFYSQEEAESAV 62
Query: 172 RLFDGS 177
F+ S
Sbjct: 63 AYFNRS 68
>gi|115481496|ref|NP_001064341.1| Os10g0321700 [Oryza sativa Japonica Group]
gi|110288867|gb|ABG66004.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638950|dbj|BAF26255.1| Os10g0321700 [Oryza sativa Japonica Group]
Length = 317
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G + Y SL E FA G V A ++ DR T RSRGFGFVT S +EA AI
Sbjct: 30 SSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAI 89
Query: 172 RLFDG 176
DG
Sbjct: 90 TGMDG 94
>gi|428176294|gb|EKX45179.1| hypothetical protein GUITHDRAFT_152759 [Guillardia theta CCMP2712]
Length = 150
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+ +V LP+++TS L ++FAE G + A +VYDR T RSRGFGFVT + + AI
Sbjct: 60 KCFVSGLPWALTSEDLRDLFAEFGAIQDANVVYDRETGRSRGFGFVTFAESADCEAAITA 119
Query: 174 FD 175
D
Sbjct: 120 MD 121
>gi|116329160|ref|YP_798880.1| RNA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116330232|ref|YP_799950.1| RNA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|359728391|ref|ZP_09267087.1| RNA-binding protein [Leptospira weilii str. 2006001855]
gi|398330637|ref|ZP_10515342.1| RNA-binding protein [Leptospira alexanderi serovar Manhao 3 str. L
60]
gi|417778785|ref|ZP_12426585.1| hypothetical protein LEP1GSC036_4114 [Leptospira weilii str.
2006001853]
gi|418720562|ref|ZP_13279760.1| hypothetical protein LEP1GSC101_3438 [Leptospira borgpetersenii
str. UI 09149]
gi|418735286|ref|ZP_13291697.1| hypothetical protein LEP1GSC121_3914 [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|421094008|ref|ZP_15554729.1| hypothetical protein LEP1GSC128_2981 [Leptospira borgpetersenii
str. 200801926]
gi|421100862|ref|ZP_15561481.1| hypothetical protein LEP1GSC125_1039 [Leptospira borgpetersenii
str. 200901122]
gi|116121904|gb|ABJ79947.1| RNA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116123921|gb|ABJ75192.1| RNA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|410363149|gb|EKP14181.1| hypothetical protein LEP1GSC128_2981 [Leptospira borgpetersenii
str. 200801926]
gi|410743540|gb|EKQ92283.1| hypothetical protein LEP1GSC101_3438 [Leptospira borgpetersenii
str. UI 09149]
gi|410748907|gb|EKR01800.1| hypothetical protein LEP1GSC121_3914 [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|410781045|gb|EKR65624.1| hypothetical protein LEP1GSC036_4114 [Leptospira weilii str.
2006001853]
gi|410796047|gb|EKR98187.1| hypothetical protein LEP1GSC125_1039 [Leptospira borgpetersenii
str. 200901122]
gi|456889098|gb|EMG00021.1| hypothetical protein LEP1GSC123_4298 [Leptospira borgpetersenii
str. 200701203]
Length = 86
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y + +L ++F GTV S +I+ D+ + +S+GFGFV M + +EA +AI+
Sbjct: 5 IYVGNLSYDLNEGTLGDLFRVHGTVNSVKIITDQYSGKSKGFGFVEMPNKDEADKAIKDL 64
Query: 175 DGS 177
DG
Sbjct: 65 DGK 67
>gi|449436259|ref|XP_004135910.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
gi|449489082|ref|XP_004158209.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
Length = 251
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A+S +LY+GN+P ++ + L + E G V AE++YD+ + RSR F FVTM +VE+
Sbjct: 68 ASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVED 127
Query: 167 AKEAI-RLFDGSVSADGICIAI 187
A AI +L + V I + I
Sbjct: 128 ANAAIEKLNETEVGGRKIKVNI 149
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGN+ ++++ +L F+E G V SA++ T +S G+GFVT S EE
Sbjct: 172 DSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDA 231
Query: 170 AIRLFDGSV 178
AI F+ ++
Sbjct: 232 AISSFNNAL 240
>gi|393784463|ref|ZP_10372626.1| hypothetical protein HMPREF1071_03494 [Bacteroides salyersiae
CL02T12C01]
gi|392665444|gb|EIY58968.1| hypothetical protein HMPREF1071_03494 [Bacteroides salyersiae
CL02T12C01]
Length = 81
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++ S L +V E GTV S +I+ DR T RS+GF F+ M EAK AI
Sbjct: 3 MYVGNLSYNVKESDLRQVMEEYGTVESVKIITDRETRRSKGFAFIEMPETSEAKNAISEL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|194385818|dbj|BAG65284.1| unnamed protein product [Homo sapiens]
Length = 263
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|302818104|ref|XP_002990726.1| hypothetical protein SELMODRAFT_185536 [Selaginella moellendorffii]
gi|300141464|gb|EFJ08175.1| hypothetical protein SELMODRAFT_185536 [Selaginella moellendorffii]
Length = 738
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 76 QVTEDSQDEPETEQEEEEEEEAVE-----EEEEPKVAASDEAARLYVGNLPYSMTSSSLA 130
Q ++DS DE ETE E + +++A EE + A + RL+V NL Y+ + L
Sbjct: 183 QWSDDSDDEKETEGEAKPQQQADTGDRPGNEEAAQDVAETDTGRLFVRNLAYTTSEEELV 242
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
+F + G V ++ D+ T+RS+G+G+V EEA A+ D S+
Sbjct: 243 SLFGQYGEVVQVHVICDKETNRSKGYGYVGFMLPEEATRAMTELDNSI 290
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++R+ V NLP +T L E F G V A+++ R +SR FGFV S EEA+ A+
Sbjct: 4 SSRVCVKNLPAYVTDDKLKEHFGAKGQVTDAKVMRTR-EGKSRRFGFVGFYSQEEAESAV 62
Query: 172 RLFDGS 177
F+ S
Sbjct: 63 AYFNRS 68
>gi|255579369|ref|XP_002530529.1| RNA binding protein, putative [Ricinus communis]
gi|223529933|gb|EEF31861.1| RNA binding protein, putative [Ricinus communis]
Length = 127
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +L+VG L + T L E F++ G V A IV DRV DRS+GFGFVT S +EA A+
Sbjct: 30 ATKLFVGGLSFYTTDKGLTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAHNAL 89
Query: 172 RLFDGSVSADGICIAIVLIEP 192
+G + +G I + +P
Sbjct: 90 SEMNGK-TLNGRVIYVDYAKP 109
>gi|262340986|ref|YP_003283841.1| RNA-binding protein [Blattabacterium sp. (Blattella germanica) str.
Bge]
gi|262272323|gb|ACY40231.1| putative RNA-binding protein [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 90
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT--DRSRGFGFVTMGSVEEAK 168
+ +LYVGNL Y MT L + F G V A+I++D T RS+GFGF+ M + E AK
Sbjct: 2 DNTKLYVGNLSYDMTEQELKKYFESIGEVTHAKIIFDESTSNKRSKGFGFIEMSNEENAK 61
Query: 169 EAIRLFDGS 177
+AI +G+
Sbjct: 62 QAIEKLNGT 70
>gi|449665135|ref|XP_002159315.2| PREDICTED: cleavage stimulation factor subunit 2-like [Hydra
magnipapillata]
Length = 413
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K AA A ++VGN+PY + L ++F++AG V S +VYDR T + +G+GF
Sbjct: 18 KEAAEKSARSVFVGNIPYEASDDQLKDIFSQAGPVLSFRLVYDRETGKPKGYGFCEYKDS 77
Query: 165 EEAKEAIRLFDGS 177
E A+ A+R +G+
Sbjct: 78 ETAQSAMRNLNGT 90
>gi|427709160|ref|YP_007051537.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427361665|gb|AFY44387.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 99
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T SL+ VFAE G+V ++ DR T R RGFGFV MG+ E AI
Sbjct: 3 VYVGNLSYEVTEDSLSAVFAEYGSVKRIQLPTDRETGRMRGFGFVEMGTDAEETSAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|410343221|gb|JAA40557.1| cold inducible RNA binding protein [Pan troglodytes]
Length = 203
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K A + + +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++
Sbjct: 29 KAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENI 88
Query: 165 EEAKEAIRLFDGSVSADGICIAI 187
++AK+A+ +G S DG I +
Sbjct: 89 DDAKDAMMAMNGK-SVDGRQIRV 110
>gi|4678944|emb|CAB41335.1| putative protein [Arabidopsis thaliana]
Length = 546
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 97 AVEEEEEPKVA---ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
AV E EE A +S+ A R+Y+GN+P ++T+ L ++ E G V +++YD+ + RS
Sbjct: 57 AVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVE--KVMYDKYSGRS 114
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGS 177
R FGF TM SVE+A + +G+
Sbjct: 115 RRFGFATMKSVEDANAVVEKLNGN 138
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++YVGNL ++T L +F+E G V SA++ T +S GFGFVT S E+ +
Sbjct: 179 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 238
Query: 170 AIRLFDGSV 178
AI + S+
Sbjct: 239 AIVALNNSL 247
>gi|344339676|ref|ZP_08770604.1| RNP-1 like RNA-binding protein [Thiocapsa marina 5811]
gi|343800412|gb|EGV18358.1| RNP-1 like RNA-binding protein [Thiocapsa marina 5811]
Length = 91
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
R+YVGNL YS+T L +VF + G +A+AE++ D+ + +S+GFGFV M + EA AI+
Sbjct: 2 RIYVGNLTYSVTDDDLRDVFGQYGELAAAEVIKDKFSGQSKGFGFVDMPNNSEADAAIK 60
>gi|315635463|ref|ZP_07890729.1| RNA-binding protein [Arcobacter butzleri JV22]
gi|315480221|gb|EFU70888.1| RNA-binding protein [Arcobacter butzleri JV22]
Length = 98
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y M L VFA+ G V SA+++ D+ T RS+GF FV M + K+AI
Sbjct: 13 IYVGNLSYRMNDKELETVFAKFGEVKSAKVIMDKETGRSKGFAFVEMADAKAGKDAIEAL 72
Query: 175 DGS 177
+G+
Sbjct: 73 NGN 75
>gi|259089109|ref|NP_001158591.1| cold inducible RNA binding protein [Oncorhynchus mykiss]
gi|225705082|gb|ACO08387.1| Cold-inducible RNA-binding protein [Oncorhynchus mykiss]
Length = 209
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + +SL E F++ G +A ++V DR T RSRGFGFVT + E+AK
Sbjct: 2 SDEG-KLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETRRSRGFGFVTFENPEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMAAMNGK-SVDGRMIRV 78
>gi|206900968|ref|YP_002250013.1| RNA-binding protein [Dictyoglomus thermophilum H-6-12]
gi|206740071|gb|ACI19129.1| RNA-binding protein [Dictyoglomus thermophilum H-6-12]
Length = 92
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 32/45 (71%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
LYVGNLP+S T L +FA GTV SA I+ DR T RS+GFGFV
Sbjct: 5 LYVGNLPWSTTEEELKNIFASHGTVYSARIISDRNTGRSKGFGFV 49
>gi|350538255|ref|NP_001232562.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128621|gb|ACH45119.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|22328599|ref|NP_193122.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|48310472|gb|AAT41827.1| At4g13860 [Arabidopsis thaliana]
gi|332657937|gb|AEE83337.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 87
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNL + T L E F+ G V A ++ DR TDRSRGFGFVT S EA+ A+
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 172 RLFDG 176
DG
Sbjct: 62 SGMDG 66
>gi|406929710|gb|EKD65230.1| RNA-binding protein [uncultured bacterium]
Length = 95
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ RL+VG L Y T L + F++AG V SA+ + DR + + +GFGFV M + EEA++AI
Sbjct: 2 STRLFVGRLSYGTTDEQLEQHFSQAGKVISAKAIVDRYSGQGKGFGFVEMATAEEAQKAI 61
Query: 172 RLFDGS 177
+ + S
Sbjct: 62 QQLNNS 67
>gi|6911146|gb|AAF31404.1|AF200323_1 putative glycine-rich RNA-binding protein 2 [Catharanthus roseus]
Length = 160
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A++D R +VG L ++ T SL+E F++ G V ++++ DR T RSRGFGFVT G +
Sbjct: 1 MASADVEFRCFVGGLAWATTDQSLSEAFSQYGEVLESKVINDRETGRSRGFGFVTFGDEK 60
Query: 166 EAKEAIRLFDGSVSADGICIAI 187
K+AI +G + DG I +
Sbjct: 61 SMKDAIVGMNGQ-TLDGRNITV 81
>gi|297620951|ref|YP_003709088.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|297376252|gb|ADI38082.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|337293226|emb|CCB91217.1| putative RNA-binding protein rbpA [Waddlia chondrophila 2032/99]
Length = 92
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL Y ++ + FA G V SA+I+ DR T +S+GFGFV E A+EAI+
Sbjct: 2 KLYVGNLSYRVSEDQFKDYFASFGEVLSAKIITDRFTGQSKGFGFVEFADKEAAEEAIKE 61
Query: 174 FDGSVSADGICIAIVLIEP 192
+GS + +G I + +P
Sbjct: 62 LNGS-NFEGRSIVVNEAKP 79
>gi|39996426|ref|NP_952377.1| RNA-binding protein [Geobacter sulfurreducens PCA]
gi|409911860|ref|YP_006890325.1| RNA-binding protein [Geobacter sulfurreducens KN400]
gi|39983306|gb|AAR34700.1| RNA-binding protein [Geobacter sulfurreducens PCA]
gi|298505436|gb|ADI84159.1| RNA-binding protein [Geobacter sulfurreducens KN400]
Length = 107
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVG++ Y T L +F+ AGTV S I+ D T RS+G G+V M + EEAKEAI
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 172 RLFDGSV 178
DG++
Sbjct: 62 ETLDGAL 68
>gi|398338058|ref|ZP_10522763.1| RNA-binding protein [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 86
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +YVGNL Y + +L ++F GTV S +I+ D+ + +S+GFGFV M + +EA +AI
Sbjct: 2 SVNIYVGNLSYDLNEGTLGDLFRVHGTVNSVKIITDQYSGKSKGFGFVEMPNKDEADKAI 61
Query: 172 RLFDG 176
+ DG
Sbjct: 62 KDLDG 66
>gi|172035929|ref|YP_001802430.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|354556024|ref|ZP_08975322.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
gi|171697383|gb|ACB50364.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|353552023|gb|EHC21421.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
Length = 98
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +TS L EVF+E GTV + DR T R RGFGFV M S ++ AI
Sbjct: 3 IYVGNLVYDVTSEDLTEVFSEYGTVKRVSLPTDRETGRPRGFGFVEMESDDQETAAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|624925|dbj|BAA05170.1| RNA-binding glycine rich protein [Nicotiana sylvestris]
gi|295393567|gb|ADG03639.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 259
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L + +SL E F++ G V A ++ DR T RSRGFGFV+ S EEA A+
Sbjct: 39 SSKLFVGGLSWGTDETSLKEAFSQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASAL 98
Query: 172 RLFDG 176
DG
Sbjct: 99 TALDG 103
>gi|157736330|ref|YP_001489013.1| RNA recognition motif-containing protein [Arcobacter butzleri
RM4018]
gi|384154771|ref|YP_005537586.1| RNA recognition motif-containing protein [Arcobacter butzleri ED-1]
gi|157698184|gb|ABV66344.1| RNA-binding region RNP-1 (RNA recognition motif) [Arcobacter
butzleri RM4018]
gi|345468325|dbj|BAK69776.1| RNA recognition motif-containing protein [Arcobacter butzleri ED-1]
Length = 98
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y M L VFA+ G V SA+++ D+ T RS+GF FV M + K+AI
Sbjct: 13 IYVGNLSYRMNDKELETVFAKFGEVKSAKVIMDKETGRSKGFAFVEMADAKAGKDAIEAL 72
Query: 175 DGS 177
+G+
Sbjct: 73 NGN 75
>gi|325972712|ref|YP_004248903.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
gi|324027950|gb|ADY14709.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
Length = 92
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++YVGNL Y+ + L ++FA+ GTV SA I+ DR T R +GFGFV M A AI
Sbjct: 2 AKKIYVGNLSYNTSEEELRDLFAQYGTVVSANIIIDRETRRPKGFGFVEMQEDAAADAAI 61
Query: 172 RLFDGS 177
DG
Sbjct: 62 SQLDGK 67
>gi|162454265|ref|YP_001616632.1| RNA-binding protein [Sorangium cellulosum So ce56]
gi|161164847|emb|CAN96152.1| RNA-binding protein [Sorangium cellulosum So ce56]
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL +S T +L FA AG V + DR T + RGF FVTMGS + A AI
Sbjct: 4 RLYVGNLSFSTTRETLESAFAAAGEVREIAMPTDRETGQPRGFAFVTMGSAQAANSAISQ 63
Query: 174 FDGSVSADGICIAI 187
+G+V DG + +
Sbjct: 64 LNGAV-LDGRALKV 76
>gi|57335957|emb|CAH25380.1| putative glycine-rich RNA-binding protein [Guillardia theta]
Length = 152
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+ +V LP+++TS L ++FAE G + A +VYDR T RSRGFGFVT + + AI
Sbjct: 62 KCFVSGLPWALTSEDLRDLFAEFGAIQDANVVYDRETGRSRGFGFVTFAESADCEAAITA 121
Query: 174 FD 175
D
Sbjct: 122 MD 123
>gi|431922216|gb|ELK19307.1| Cold-inducible RNA-binding protein [Pteropus alecto]
Length = 220
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|303277453|ref|XP_003058020.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460677|gb|EEH57971.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 930
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
S +EPE + VEE + A E RL+V NLP++ T +A FA+ G +
Sbjct: 346 SPEEPEVVDFRAPKPSRVEEVTADDMEAVAETGRLFVRNLPFTATEEEVAAHFAKHGALT 405
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
+ ++ DR T S+G ++T E A A+R DGS+
Sbjct: 406 AVHVIVDRTTRASKGLAYITYALPENATTAMREMDGSI 443
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGF 158
E++EP +S RL V N+P +T L E FAE G V +I+ + +D +SR F
Sbjct: 27 EDDEPAPPSS----RLCVKNIPKHLTRDRLREHFAERGEVTDVKIL--KTSDGKSRCMAF 80
Query: 159 VTMGSVEEAKEAIRLFDGS 177
V + +A +A+ FD +
Sbjct: 81 VGFKTEADATKALEYFDNT 99
>gi|431930897|ref|YP_007243943.1| RRM domain-containing RNA-binding protein [Thioflavicoccus mobilis
8321]
gi|431829200|gb|AGA90313.1| RRM domain-containing RNA-binding protein [Thioflavicoccus mobilis
8321]
Length = 90
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLPY++ + L E F+ G V+ ++ DR+T S+GFGFV M S +A AI+
Sbjct: 3 IYVGNLPYNVKDADLRETFSRFGEVSQVTVIMDRLTGESKGFGFVEMSSNSQADAAIKGL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ +G I + +P
Sbjct: 63 NGT-DLNGRNITVNQAKP 79
>gi|325279880|ref|YP_004252422.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 20712]
gi|324311689|gb|ADY32242.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 20712]
Length = 99
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ L Y T + L E+F+E G ++SA+I+ DR T RSRGFGFV M + E ++AI
Sbjct: 3 IYISGLSYGTTDADLNELFSEYGEISSAKIISDRETGRSRGFGFVEMTNDTEGQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ D IA+ + P
Sbjct: 63 NGA-EYDHKVIAVSIARP 79
>gi|71668509|gb|AAZ38826.1| aggrecan promoter binding protein [Gallus gallus]
Length = 172
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|320587701|gb|EFX00176.1| ribosome biogenesis protein [Grosmannia clavigera kw1407]
Length = 822
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARL------YVGNLPYSMTSSSLA 130
VT+ + E E +QE + EA E+ P A + AR+ +V +LP + TS L
Sbjct: 5 VTQKRRREAEADQERRHDSEATGEDA-PTTAPPSKKARVEERRSVFVRSLPSTATSEKLT 63
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190
E F+E V A +V D T SRG+GFVT E+AK A D + DG + + +
Sbjct: 64 EFFSEHFPVKHATVVTDPKTKESRGYGFVTFTDAEDAKAAKEKLDNGL-FDGRRLRLDIA 122
Query: 191 EP 192
EP
Sbjct: 123 EP 124
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
+++EE E+E K +D + L++ NLP++ + +L F++ G V A IV DR TD
Sbjct: 354 QKDEEDKEKEAPKKTFTTDNSTTLFIRNLPFTTSDEALKTHFSQFGAVRYARIVMDRATD 413
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI 183
R G GFV FDG V+ D +
Sbjct: 414 RPAGTGFVC------------FFDGEVAQDCV 433
Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 103 EPKVAASDEAARLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E +A + +A +L V NLP+S+ TS L +F G V A++ + + GFGFVT+
Sbjct: 153 EEDLAEARKAPKLIVRNLPWSIKTSEDLTNLFRMHGKVKFADLPQSK--GKMSGFGFVTL 210
Query: 162 GSVEEAKEAIRLFDGSVSADGICIAI 187
+ A+ AI +G + DG +A+
Sbjct: 211 RGRKNAENAIAAINGK-TVDGRTLAV 235
>gi|220908811|ref|YP_002484122.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219865422|gb|ACL45761.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 158
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ RLYVGNLP + L +FA E G + S ++V DR T + RGFGFVT+ + E+A +
Sbjct: 2 SVRLYVGNLPKELDRKELEALFATEVGEIGSTKVVTDRKTGKCRGFGFVTVETNEQADQV 61
Query: 171 IRLFDGSVSAD 181
I +G + D
Sbjct: 62 IEKLNGHLFRD 72
>gi|170585852|ref|XP_001897696.1| RNA recognition motif containing protein [Brugia malayi]
gi|312066609|ref|XP_003136351.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|158595003|gb|EDP33580.1| RNA recognition motif containing protein, putative [Brugia malayi]
gi|307768478|gb|EFO27712.1| RNA recognition domain-containing protein containing protein [Loa
loa]
gi|402585724|gb|EJW79663.1| RNA-binding protein [Wuchereria bancrofti]
Length = 300
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 78 TEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG 137
T+DS E +T+ E V E + +E +++VG + Y +T+ L++ F++ G
Sbjct: 3 TQDSHQEEQTQNSETVNGGTVSEGGLKDLGKGNEDKKIFVGGIAYDVTNEDLSQYFSQYG 62
Query: 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
VA A++ YDR T RSRGF FV + E + A+
Sbjct: 63 EVAQAQVKYDRNTGRSRGFAFVEFTTGEACRAAL 96
>gi|444335495|ref|YP_007391864.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Blatta orientalis)
str. Tarazona]
gi|444299874|gb|AGD98111.1| RNP-1 RNA-binding protein [Blattabacterium sp. (Blatta orientalis)
str. Tarazona]
Length = 90
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL Y MT L F G V A+I++D T RS+GFGF+ M + E AK+AI
Sbjct: 5 KLYVGNLSYEMTEQELKNYFESIGEVTHAKIIFDESTSNKRSKGFGFIEMSNEENAKQAI 64
Query: 172 RLFDGS 177
+G+
Sbjct: 65 EKLNGT 70
>gi|298248948|ref|ZP_06972752.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297546952|gb|EFH80819.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 96
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL Y +T L + FA+ G V +V +R T RS+GFGFV M + ++A+ AI
Sbjct: 2 RLYVGNLSYRITDQELGDFFAQIGRVQRVRVVTERETGRSKGFGFVDMLNEQDARAAIEQ 61
Query: 174 FDGS 177
+G
Sbjct: 62 LNGK 65
>gi|1666299|emb|CAA63557.1| RNA-binding protein [Anabaena variabilis]
Length = 102
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T + L VFAE GTV ++ DR T R RGF FV MG+ E AI
Sbjct: 3 IYVGNLSYEVTENDLKGVFAEYGTVKRVQVPQDRETGRPRGFAFVEMGTDAEEDAAIEGL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|404497479|ref|YP_006721585.1| RNA-binding protein [Geobacter metallireducens GS-15]
gi|418065178|ref|ZP_12702553.1| RNP-1 like RNA-binding protein [Geobacter metallireducens RCH3]
gi|78195083|gb|ABB32850.1| RNA-binding protein [Geobacter metallireducens GS-15]
gi|373562810|gb|EHP89017.1| RNP-1 like RNA-binding protein [Geobacter metallireducens RCH3]
Length = 134
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG++ Y T L +F AGTV S ++ DR T +G G+V M ++EEAKEA+
Sbjct: 7 LYVGHMSYEATEDDLRRLFTVAGTVTSVHLITDRDTGEFKGCGYVRMATIEEAKEAVETL 66
Query: 175 DGSVSADGICIAIVLIEP 192
DG++ + I + L P
Sbjct: 67 DGALLRN-RAITVTLARP 83
>gi|125551311|gb|EAY97020.1| hypothetical protein OsI_18941 [Oryza sativa Indica Group]
Length = 104
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+R+YVGNLPY SL + FA G V+S EI DR T RSRGFGFV+ + A +AI+
Sbjct: 23 SRVYVGNLPYRADERSLKDSFANYGAVSS-EIAVDRETGRSRGFGFVSFQDSKSASDAIK 81
Query: 173 LFDG 176
+G
Sbjct: 82 GMNG 85
>gi|121583453|ref|YP_973884.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120596707|gb|ABM40142.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 150
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNLPY++ L + F + G V SA+++ +R T RS+GFGFV M + +A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAING 63
Query: 174 FDG 176
+G
Sbjct: 64 MNG 66
>gi|452822390|gb|EME29410.1| RNA-binding protein [Galdieria sulphuraria]
Length = 106
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEA----GTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
+A RL++GNL + +S L F A +V +A +V DR + RSRGFGFVT S E+
Sbjct: 3 QAVRLFIGNLSWKTSSEGLKRAFQNAIGVEASVVNAHVVMDRYSGRSRGFGFVTFESPED 62
Query: 167 AKEAIRLFDGSVSADGICIAIVL 189
A A+ L +G DG I + L
Sbjct: 63 AASAVNLLNGK-ELDGRAIRVDL 84
>gi|374314656|ref|YP_005061084.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350300|gb|AEV28074.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 92
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++YVGN+ Y+ T L E+F++ G V SA I+ DR T R +GFGFV M A AI
Sbjct: 2 AKKIYVGNMSYNTTEDDLRELFSQYGNVLSATIIMDRETRRPKGFGFVEMEENSAADAAI 61
Query: 172 RLFDGS-VSADGICIAIVLIEPFNCQHFGNGR 202
DG + + + + +P N + N R
Sbjct: 62 SQLDGKEIDGRNLRVNEAIAKPRN--EYSNNR 91
>gi|291286869|ref|YP_003503685.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884029|gb|ADD67729.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
Length = 89
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL YS ++ +F++ G V S I+ DR T RS+GFGFV M + ++AK AI
Sbjct: 3 IYVGNLSYSTNEDDISALFSKIGEVDSVRIITDRDTGRSKGFGFVEMANSDQAKAAIDKL 62
Query: 175 DGSVSADGICIAIVLIEPFNCQHFGNGR 202
+ DG + + +P N GN R
Sbjct: 63 N-ETELDGRNLTVNEAKPKNNDR-GNSR 88
>gi|169773975|ref|XP_001821456.1| ribosome biogenesis (Nop4) [Aspergillus oryzae RIB40]
gi|83769317|dbj|BAE59454.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869076|gb|EIT78281.1| nucleolar protein fibrillarin NOP77 [Aspergillus oryzae 3.042]
Length = 726
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 85 PETEQEEEEEEEAVEEEEEPKV---AASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVA 140
PE EE E A++ + V + SD+ R L+V +LP S+T+ L E F+++ +
Sbjct: 13 PEGRGNSEEVEAAMDTAKNDTVQEESVSDKPRRTLFVRSLPASVTTEKLVEYFSQSYVIK 72
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192
A +V D T +S+G+GFVT V++AK A+ F+GSV DG I + +P
Sbjct: 73 HALVVNDSETKQSKGYGFVTFADVDDAKAALDEFNGSV-FDGKKIKVDYAQP 123
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 53/93 (56%)
Query: 80 DSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTV 139
+ +D E Q +E+E+E EEEEE + AA +++ NLP++ T +L E F + G +
Sbjct: 280 EDEDMDEIAQSDEDEDEEEEEEEEEEKEDERTAATVFIRNLPFTCTDETLYEHFTQFGPL 339
Query: 140 ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A IV D T+R RG GFV VE+A +R
Sbjct: 340 RYARIVVDPETERPRGTGFVCFWKVEDAAACVR 372
>gi|238492008|ref|XP_002377241.1| ribosome biogenesis (Nop4), putative [Aspergillus flavus NRRL3357]
gi|220697654|gb|EED53995.1| ribosome biogenesis (Nop4), putative [Aspergillus flavus NRRL3357]
Length = 729
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 85 PETEQEEEEEEEAVEEEEEPKV---AASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVA 140
PE EE E A++ + V + SD+ R L+V +LP S+T+ L E F+++ +
Sbjct: 13 PEGRGNSEEVEAAMDTAKNDTVQEESVSDKPRRTLFVRSLPASVTTEKLVEYFSQSYVIK 72
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192
A +V D T +S+G+GFVT V++AK A+ F+GSV DG I + +P
Sbjct: 73 HALVVNDSETKQSKGYGFVTFADVDDAKAALDEFNGSV-FDGKKIKVDYAQP 123
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
AA +++ NLP++ T +L E F + G + A IV D T+R RG GFV VE+A +
Sbjct: 315 AATVFIRNLPFTCTDETLYEHFTQFGPLRYARIVVDPETERPRGTGFVCFWKVEDAAACV 374
Query: 172 R 172
R
Sbjct: 375 R 375
>gi|406911424|gb|EKD51218.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 125
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +LY+GNLPYS+ + L + G V SA+++ D+ RS+GFGFV M + EEA++AI
Sbjct: 2 SKKLYIGNLPYSVDDAQLESMAVAFGEVVSAQVIQDKFNGRSKGFGFVEMANDEEAQKAI 61
>gi|256421371|ref|YP_003122024.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256036279|gb|ACU59823.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 108
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL Y + + L ++F+E G V SA+I+ D T RSRGFGFV M + EE +A+
Sbjct: 3 IYVANLHYRLNDADLHQIFSEFGEVTSAKIIKDHETGRSRGFGFVEMPNQEEGSKAMDSL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGT 65
>gi|51893978|ref|YP_076669.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM
14863]
gi|51857667|dbj|BAD41825.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM
14863]
Length = 86
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 36/57 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNLP+S T L +F G V +A I+ DR T RSRGFGFV M E A+ AI
Sbjct: 5 IYVGNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDMADEEAARRAI 61
>gi|119589928|gb|EAW69522.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
gi|119589930|gb|EAW69524.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
Length = 297
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|30585341|gb|AAP36943.1| Homo sapiens cold inducible RNA binding protein [synthetic
construct]
gi|61371531|gb|AAX43684.1| cold inducible RNA binding protein [synthetic construct]
gi|61371536|gb|AAX43685.1| cold inducible RNA binding protein [synthetic construct]
Length = 173
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|427720688|ref|YP_007068682.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427353124|gb|AFY35848.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 99
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L+ VFAE G+V ++ DR T R RGFGFV MG+ E AI
Sbjct: 3 IYVGNLSYEVTQDGLSGVFAEYGSVKRVQLPTDRDTGRVRGFGFVEMGTDAEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|385305976|gb|EIF49917.1| poly(a+) rna-binding protein [Dekkera bruxellensis AWRI1499]
Length = 439
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP++ + ++F G V SAE+ R RSRGFG + G+ E+AK+ I F
Sbjct: 174 VYVGNLPFTTNNEEFQDIFKNXGDVKSAEVRMGR-NGRSRGFGIIIYGNEEDAKKTIEAF 232
Query: 175 DGSVSADGICIAI 187
DG V DG I +
Sbjct: 233 DGQV-VDGRTIQV 244
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGNLPY + L + F + G V A+I+ T S+G G V S E A++AIR+F
Sbjct: 66 VFVGNLPYRTSWQDLKDCFRDVGEVLHADIMSFHGT--SKGMGTVEFASRELAQKAIRMF 123
Query: 175 D 175
D
Sbjct: 124 D 124
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR--GFGFVTMGSVEEAKE 169
A L+V NLP+ T S L ++F TV AEI YD DR+R G V +G E
Sbjct: 283 GATLFVSNLPWETTQSDLYDLFGSIATVVKAEIQYD---DRNRXSGNAVVELGDEEXXAN 339
Query: 170 AIRLFDG 176
A+ DG
Sbjct: 340 ALAQLDG 346
>gi|388494768|gb|AFK35450.1| unknown [Medicago truncatula]
Length = 176
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A+L++G + YS + L E F+ G V A+I+ DR T RSRGFGF+T + EEA A+
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 172 RLFD 175
+ D
Sbjct: 99 QAMD 102
>gi|333993552|ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
gi|333734416|gb|AEF80365.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
Length = 100
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNL Y T L +F++ G V S++I++DR + S+GFGF+ M + EEA AI
Sbjct: 2 AKKLYVGNLSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAI 61
>gi|402903547|ref|XP_003914625.1| PREDICTED: cold-inducible RNA-binding protein [Papio anubis]
Length = 199
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 29 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 87
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 88 KDAMMAMNGK-SVDGRQIRV 106
>gi|194336480|ref|YP_002018274.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308957|gb|ACF43657.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 95
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL Y+++ L + F+E G VA+A I+ D+ + RS+GFGFV M EA+EAI
Sbjct: 3 IYIGNLAYTVSEDDLRDAFSEFGEVANASIINDKFSGRSKGFGFVEMPKDSEAREAIESM 62
Query: 175 DG 176
+G
Sbjct: 63 NG 64
>gi|150007582|ref|YP_001302325.1| RNA-binding protein rbpA [Parabacteroides distasonis ATCC 8503]
gi|255013892|ref|ZP_05286018.1| putative RNA-binding protein rbpA [Bacteroides sp. 2_1_7]
gi|298375526|ref|ZP_06985483.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides sp.
3_1_19]
gi|410101874|ref|ZP_11296802.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
gi|423331931|ref|ZP_17309715.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|149936006|gb|ABR42703.1| putative RNA-binding protein rbpA [Parabacteroides distasonis ATCC
8503]
gi|298268026|gb|EFI09682.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides sp.
3_1_19]
gi|409229772|gb|EKN22644.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|409239672|gb|EKN32456.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
Length = 123
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL Y+++ L +FA+ G + SA+++ DR T RSRGFGFV + E AK+AI
Sbjct: 3 LYISNLSYNISDEDLRLLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ S DG I I P
Sbjct: 63 N-QASYDGKVINITEARP 79
>gi|298484464|ref|ZP_07002618.1| RNA-binding protein [Bacteroides sp. D22]
gi|336402120|ref|ZP_08582862.1| hypothetical protein HMPREF0127_00175 [Bacteroides sp. 1_1_30]
gi|295084312|emb|CBK65835.1| RNA-binding proteins (RRM domain) [Bacteroides xylanisolvens XB1A]
gi|298269373|gb|EFI10980.1| RNA-binding protein [Bacteroides sp. D22]
gi|335944441|gb|EGN06262.1| hypothetical protein HMPREF0127_00175 [Bacteroides sp. 1_1_30]
Length = 81
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y++ S L V E GTVAS +++ DR T RS+GF F+ M EA AI+
Sbjct: 3 LYIGNLSYNVKESDLRNVMEEYGTVASVKLITDRETRRSKGFAFIEMPDDTEANNAIKQL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|428304645|ref|YP_007141470.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428246180|gb|AFZ11960.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 103
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL + +T L++ FAE GTV S ++ DR T R RGFGFV M S E AI
Sbjct: 3 VYVGNLSFDVTQDDLSQAFAEYGTVKSVQLPTDRETGRMRGFGFVEMSSDAEETAAIDAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|71279315|ref|YP_267104.1| RNA-binding protein [Colwellia psychrerythraea 34H]
gi|71145055|gb|AAZ25528.1| RNA-binding protein [Colwellia psychrerythraea 34H]
Length = 160
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 108 ASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
ASDE R LYVGNLPY +S+ E+F+E G+V S ++ D+ T + RGFGFV M S
Sbjct: 65 ASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS 121
>gi|424843086|ref|ZP_18267711.1| RRM domain-containing RNA-binding protein [Saprospira grandis DSM
2844]
gi|395321284|gb|EJF54205.1| RRM domain-containing RNA-binding protein [Saprospira grandis DSM
2844]
Length = 126
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++V L + TS L E+FA+ GTV SA+I+ DR TDRS+GFGFV M E+ + AI
Sbjct: 3 IFVAKLNFRTTSEELEELFAQFGTVDSAKIIMDRETDRSKGFGFVEMPDEEDGQAAI 59
>gi|379728946|ref|YP_005321142.1| rnp-1 like RNA-binding protein [Saprospira grandis str. Lewin]
gi|378574557|gb|AFC23558.1| rnp-1 like RNA-binding protein [Saprospira grandis str. Lewin]
Length = 122
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++V L + TS L E+FA+ GTV SA+I+ DR TDRS+GFGFV M E+ + AI
Sbjct: 3 IFVAKLNFRTTSEELEELFAQFGTVDSAKIIMDRETDRSKGFGFVEMPDEEDGQAAI 59
>gi|307152307|ref|YP_003887691.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
gi|306982535|gb|ADN14416.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
Length = 116
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLPY +T + EVF E GTV ++ DR + R RGF FV + S E +AI
Sbjct: 3 IYVGNLPYQVTQDDIKEVFGEYGTVKQVKLPIDRESGRVRGFAFVDLDSDAEETKAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|161408091|dbj|BAF94149.1| cold-inducible RNA binding protein [Alligator mississippiensis]
Length = 165
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|262406570|ref|ZP_06083119.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|345509344|ref|ZP_08788944.1| hypothetical protein BSAG_04263 [Bacteroides sp. D1]
gi|423213688|ref|ZP_17200217.1| hypothetical protein HMPREF1074_01749 [Bacteroides xylanisolvens
CL03T12C04]
gi|229446758|gb|EEO52549.1| hypothetical protein BSAG_04263 [Bacteroides sp. D1]
gi|262355273|gb|EEZ04364.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|392693617|gb|EIY86848.1| hypothetical protein HMPREF1074_01749 [Bacteroides xylanisolvens
CL03T12C04]
Length = 81
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y++ S L V E GTVAS +++ DR T RS+GF F+ M EA AI+
Sbjct: 3 LYIGNLSYNVKESDLRNVMEEYGTVASVKLITDRETRRSKGFAFIEMPDDAEANNAIKQL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|296232406|ref|XP_002761576.1| PREDICTED: cold-inducible RNA-binding protein [Callithrix jacchus]
Length = 172
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|321479154|gb|EFX90110.1| hypothetical protein DAPPUDRAFT_299933 [Daphnia pulex]
Length = 381
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
+P+V ++VGN+PY +T L ++F+EAG V S +IVYDR T + +G+GF
Sbjct: 4 DPQVVIDKSLRSVFVGNIPYDVTEEKLKDIFSEAGPVVSFKIVYDRETGKPKGYGFCEYR 63
Query: 163 SVEEAKEAIRLFDG 176
E A A+R +G
Sbjct: 64 DQETALCAMRNLNG 77
>gi|4502847|ref|NP_001271.1| cold-inducible RNA-binding protein [Homo sapiens]
gi|197102572|ref|NP_001124692.1| cold-inducible RNA-binding protein [Pongo abelii]
gi|386782231|ref|NP_001248245.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|397465267|ref|XP_003804430.1| PREDICTED: cold-inducible RNA-binding protein [Pan paniscus]
gi|426386441|ref|XP_004059693.1| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Gorilla
gorilla gorilla]
gi|5921786|sp|Q14011.1|CIRBP_HUMAN RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|75070980|sp|Q5RF83.1|CIRBP_PONAB RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|1060893|dbj|BAA11212.1| CIRP [Homo sapiens]
gi|2541973|gb|AAC51787.1| DNA damage-inducible RNA binding protein [Homo sapiens]
gi|2924760|gb|AAC04895.1| CIRP [Homo sapiens]
gi|12653269|gb|AAH00403.1| Cold inducible RNA binding protein [Homo sapiens]
gi|12654167|gb|AAH00901.1| Cold inducible RNA binding protein [Homo sapiens]
gi|30583259|gb|AAP35874.1| cold inducible RNA binding protein [Homo sapiens]
gi|55725420|emb|CAH89574.1| hypothetical protein [Pongo abelii]
gi|60654971|gb|AAX32049.1| cold inducible RNA binding protein [synthetic construct]
gi|67970531|dbj|BAE01608.1| unnamed protein product [Macaca fascicularis]
gi|119589926|gb|EAW69520.1| cold inducible RNA binding protein, isoform CRA_a [Homo sapiens]
gi|119589929|gb|EAW69523.1| cold inducible RNA binding protein, isoform CRA_a [Homo sapiens]
gi|157928054|gb|ABW03323.1| cold inducible RNA binding protein [synthetic construct]
gi|157928769|gb|ABW03670.1| cold inducible RNA binding protein [synthetic construct]
gi|197692151|dbj|BAG70039.1| cold inducible RNA binding protein [Homo sapiens]
gi|197692397|dbj|BAG70162.1| cold inducible RNA binding protein [Homo sapiens]
gi|261860266|dbj|BAI46655.1| cold inducible RNA binding protein [synthetic construct]
gi|343958578|dbj|BAK63144.1| cold-inducible RNA-binding protein [Pan troglodytes]
gi|383415637|gb|AFH31032.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|384940732|gb|AFI33971.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|410224774|gb|JAA09606.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410260066|gb|JAA17999.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410289136|gb|JAA23168.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343217|gb|JAA40555.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343219|gb|JAA40556.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343223|gb|JAA40558.1| cold inducible RNA binding protein [Pan troglodytes]
Length = 172
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|414075426|ref|YP_006994744.1| RNA-binding protein [Anabaena sp. 90]
gi|413968842|gb|AFW92931.1| RNA-binding protein [Anabaena sp. 90]
Length = 108
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T +L+ VFA+ G V ++ DR T R RGFGFV MG+ E + AI
Sbjct: 3 IYVGNLSYEVTQEALSAVFADYGAVKRVQLPTDRETGRLRGFGFVEMGTEAEEQAAIDAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|255692575|ref|ZP_05416250.1| RNA-binding protein [Bacteroides finegoldii DSM 17565]
gi|423300001|ref|ZP_17278026.1| hypothetical protein HMPREF1057_01167 [Bacteroides finegoldii
CL09T03C10]
gi|260621722|gb|EEX44593.1| hypothetical protein BACFIN_07718 [Bacteroides finegoldii DSM
17565]
gi|408473810|gb|EKJ92332.1| hypothetical protein HMPREF1057_01167 [Bacteroides finegoldii
CL09T03C10]
Length = 81
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y++ S L V E GTVAS +++ DR T RS+GF F+ M EA AI+
Sbjct: 3 LYIGNLSYNVKESDLRNVMEEYGTVASVKLITDRETRRSKGFAFIEMPDDTEANNAIKQL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|427415488|ref|ZP_18905672.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425756163|gb|EKU97020.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 90
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y T+ L VFAE GTV S + DR T R RGF FV MG+ E AI
Sbjct: 3 IYVGNLSYDATNEDLTAVFAEYGTVKSVHLPTDRETGRMRGFAFVEMGAESEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|402574395|ref|YP_006623738.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
meridiei DSM 13257]
gi|402255592|gb|AFQ45867.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
meridiei DSM 13257]
Length = 83
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
A LYVGNLP++ T+ L + F+E G V S+ I+ DR T RSRGFGF+ + ++ A+ A
Sbjct: 2 ATTLYVGNLPWNTTAEELGQFFSEYGQVESSRIITDRETGRSRGFGFIEVEDMDAARMA 60
>gi|326918654|ref|XP_003205603.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Meleagris gallopavo]
Length = 170
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|302676924|ref|XP_003028145.1| hypothetical protein SCHCODRAFT_60180 [Schizophyllum commune H4-8]
gi|300101833|gb|EFI93242.1| hypothetical protein SCHCODRAFT_60180 [Schizophyllum commune H4-8]
Length = 743
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 79 EDSQDEPETEQ----EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFA 134
E S DE + +Q + E + E E+P +A+ + +RL+V NL +S T+ L E+F+
Sbjct: 197 EQSDDEEDAQQKSSLQSNEPNDYAEPPEDPTIASIKQTSRLFVRNLAFSCTTDDLTELFS 256
Query: 135 EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175
G ++ I D +T +S+G +VT + E+A +A ++ D
Sbjct: 257 PLGALSQVHIPVDAMTKQSKGMAYVTFVNPEDAVKAYQMLD 297
>gi|403308137|ref|XP_003944528.1| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Saimiri
boliviensis boliviensis]
gi|403308139|ref|XP_003944529.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Saimiri
boliviensis boliviensis]
Length = 172
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|218132093|ref|ZP_03460897.1| hypothetical protein BACEGG_03720 [Bacteroides eggerthii DSM 20697]
gi|317477123|ref|ZP_07936364.1| RNA recognition domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
gi|217985743|gb|EEC52084.1| hypothetical protein BACEGG_03720 [Bacteroides eggerthii DSM 20697]
gi|316906666|gb|EFV28379.1| RNA recognition domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
Length = 99
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ L Y + ++ L +FAE G V+SA++++DR T RSRGF FV M + E ++AI
Sbjct: 3 IYISGLSYGINNADLTNLFAEFGEVSSAKVIFDRETGRSRGFAFVEMNNDTEGQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G V D I++ + P
Sbjct: 63 NG-VEYDNKVISVSVARP 79
>gi|406994417|gb|EKE13409.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 155
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI-R 172
RL+V LP+S T L ++FA G V S I+ DR T RS+GFGFV M + EEA AI +
Sbjct: 25 RLFVAGLPFSSTQDELRDLFASVGNVVSTSIITDRETGRSKGFGFVEMETSEEASNAIAK 84
Query: 173 LFDGSVSADGICIA 186
L D + +A
Sbjct: 85 LNDTDFGGRKLIVA 98
>gi|121534066|ref|ZP_01665891.1| RNP-1 like RNA-binding protein [Thermosinus carboxydivorans Nor1]
gi|121307169|gb|EAX48086.1| RNP-1 like RNA-binding protein [Thermosinus carboxydivorans Nor1]
Length = 83
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVGNLP+ T ++LA+ F GTV S+ I+ D+ T RSRGFGFV + E+A++ +
Sbjct: 2 AKTLYVGNLPWGTTEAALADAFRPYGTVYSSRIIMDKETGRSRGFGFVEVAD-EDAEKMV 60
Query: 172 RLFDGS 177
+GS
Sbjct: 61 TAMNGS 66
>gi|389578479|ref|ZP_10168506.1| RRM domain-containing RNA-binding protein [Desulfobacter postgatei
2ac9]
gi|389400114|gb|EIM62336.1| RRM domain-containing RNA-binding protein [Desulfobacter postgatei
2ac9]
Length = 93
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL MT +L E F G V S +I+ +R +RS+GFGFV M S EA +AI+
Sbjct: 2 KIYVGNLTEYMTEEALKEAFEAFGEVESVKIIKNRFNERSKGFGFVEMPSNSEADKAIKA 61
Query: 174 FDGSV 178
+G++
Sbjct: 62 LNGNI 66
>gi|156367097|ref|XP_001627256.1| predicted protein [Nematostella vectensis]
gi|156214160|gb|EDO35156.1| predicted protein [Nematostella vectensis]
Length = 86
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R Y+GNL YS+ +L E F V +++ DR T R RGFGFVT GS EE ++A
Sbjct: 3 EEYRCYIGNLSYSVDEQALEEKF-HGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKA 61
Query: 171 IRLFDGSVSADGICIAIVLIEP 192
I FDG DG + + +P
Sbjct: 62 IDEFDGQ-DFDGRPMKVNQAQP 82
>gi|426229493|ref|XP_004008825.1| PREDICTED: cold-inducible RNA-binding protein [Ovis aries]
Length = 171
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|299742217|ref|XP_001832319.2| hypothetical protein CC1G_07706 [Coprinopsis cinerea okayama7#130]
gi|298405084|gb|EAU89480.2| hypothetical protein CC1G_07706 [Coprinopsis cinerea okayama7#130]
Length = 1711
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E+ + E + + +V A D L+VGNLPY + L ++F AGTV A++
Sbjct: 270 ERRDRNSEGGGSRDRDMRVPARDTRTLLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLG 329
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
+RSRG+G V + + E+A AI +F+G
Sbjct: 330 -PDNRSRGYGTVLLATAEDAGRAIDMFNG 357
>gi|255075605|ref|XP_002501477.1| predicted protein [Micromonas sp. RCC299]
gi|226516741|gb|ACO62735.1| predicted protein [Micromonas sp. RCC299]
Length = 951
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+ DEP+ + + + EE E+ E A E RL+V NLP++ T +A FA G +A
Sbjct: 351 ATDEPKKDDKPKVEEVTAEDME-----AVAETGRLFVRNLPFTATEEEVAAHFAPYGNLA 405
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
I+ D+ T RS+G ++T E A A+ DGS+
Sbjct: 406 GVFILADKATKRSKGLAYITYALPENASRAMEELDGSI 443
>gi|223039621|ref|ZP_03609908.1| RNA-binding region RNP-1 [Campylobacter rectus RM3267]
gi|222879192|gb|EEF14286.1| RNA-binding region RNP-1 [Campylobacter rectus RM3267]
Length = 81
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNL Y MT + L + FA G V A+IV DR T+RS+GFGFV M + +A +AI
Sbjct: 3 IYVGNLSYRMTEAELKDTFAPFGEVKRAKIVKDRDTNRSKGFGFVEMENDADALKAI 59
>gi|218246364|ref|YP_002371735.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8801]
gi|257059410|ref|YP_003137298.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8802]
gi|218166842|gb|ACK65579.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8801]
gi|256589576|gb|ACV00463.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8802]
Length = 92
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T + L VFAE G+V + DR T R RGF FV MG+ + AI
Sbjct: 3 IYVGNLSYEVTEADLNSVFAEYGSVKRVHVPTDRDTGRPRGFAFVEMGTDAQEATAIDTL 62
Query: 175 DGSVSADGICIAIVLIEPFNCQHFGNGRCLVF 206
DG+ G + + L P ++ GNGR F
Sbjct: 63 DGAEWM-GRALTVNLARP--RENSGNGRRNSF 91
>gi|443323178|ref|ZP_21052187.1| RRM domain-containing RNA-binding protein [Gloeocapsa sp. PCC
73106]
gi|442787088|gb|ELR96812.1| RRM domain-containing RNA-binding protein [Gloeocapsa sp. PCC
73106]
Length = 95
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 39/67 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T S L +VFAE GTV I DR T R+RGF FV M + E AI
Sbjct: 3 IYVGNLNYKVTDSDLNDVFAEYGTVKRVHIPTDRDTGRARGFAFVEMETEAEEDAAITAL 62
Query: 175 DGSVSAD 181
DG+ D
Sbjct: 63 DGAEWMD 69
>gi|20975278|dbj|BAB92956.1| cold inducible RNA-binding protein beta [Hyla japonica]
Length = 166
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+++SDE +L+VG L + +L +VF + G ++ +V DR T RSRGFGFVT + E
Sbjct: 1 MSSSDEG-KLFVGGLSFDTEEQNLEQVFGKYGQISEVVVVKDRETQRSRGFGFVTFENPE 59
Query: 166 EAKEAIRLFDGSVSADGICIAI 187
+AK+A+ +G S DG I +
Sbjct: 60 DAKDAMEAMNGK-SVDGRQIRV 80
>gi|242083506|ref|XP_002442178.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
gi|241942871|gb|EES16016.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
Length = 250
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L Y SL + FA+ G V A I+ DR + RSRGFGFVT S EEA AI
Sbjct: 29 SSKLFVGGLSYGTDDHSLRDEFAKYGEVIEARIILDRESGRSRGFGFVTYTSSEEASAAI 88
Query: 172 RLFDGSVSADGICIAI 187
DG + DG I +
Sbjct: 89 TAMDGK-TLDGRSIRV 103
>gi|170098488|ref|XP_001880463.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644901|gb|EDR09150.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 154
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A++YVGNL ++ T +L + F+E G V + ++ DR T RSRGFGFVT S +EA AI
Sbjct: 2 SAKVYVGNLSWNTTDDTLRQAFSEFGQVLDSIVMRDRDTGRSRGFGFVTFSSGQEADAAI 61
>gi|148927167|ref|ZP_01810792.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
gi|147887382|gb|EDK72831.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
Length = 108
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +L++G+L Y+ T SL FAE G V A++V DR + RS+GFGFVT + E+A AI
Sbjct: 2 SKKLFIGSLAYATTDDSLRAHFAEKGEVEEAKVVTDRDSGRSKGFGFVTYVNDEDADTAI 61
Query: 172 RLFDGSVSADGICIAIVLIEP 192
+ D S DG I + P
Sbjct: 62 KELDNS-ELDGRNIHVNEARP 81
>gi|77735511|ref|NP_001029450.1| cold-inducible RNA-binding protein [Bos taurus]
gi|74353851|gb|AAI02774.1| Cold inducible RNA binding protein [Bos taurus]
gi|296485364|tpg|DAA27479.1| TPA: cold inducible RNA binding protein [Bos taurus]
Length = 213
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|116787064|gb|ABK24360.1| unknown [Picea sitchensis]
Length = 365
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 108 ASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++D+A R LY+G L Y + L EVF++ G + + YD+ T++SRGF FVT +VE
Sbjct: 153 SADQAQRKLYIGGLSYDTANDKLLEVFSKYGEIEEGSVAYDKNTNKSRGFAFVTFKTVEA 212
Query: 167 AKEAIRLFDGSVSADGICIAIVL 189
K A++ + ++ DG + + L
Sbjct: 213 TKRALKEPNKTI--DGRTVTVKL 233
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 101 EEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
EE VA+ D A R L+V L + +S +L + F + G + ++ D+ + +SRGFGFV
Sbjct: 56 EEIKDVASKDPAHRKLFVRGLAWETSSQTLCDAFEQYGEIEEGAVIMDKASGKSRGFGFV 115
Query: 160 TMGSVEEAKEAI----RLFDGSVSADGICIA 186
T ++ A++A+ + DG ++ + +A
Sbjct: 116 TFKHMDSAQKALKEPSKTIDGRITVSNLAVA 146
>gi|213404018|ref|XP_002172781.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
gi|212000828|gb|EEB06488.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 485
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 106 VAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+ DE++R L+VGNLPYS+ L ++F +AG V A++ + RSRG G V M +V
Sbjct: 134 MGGEDESSRQLFVGNLPYSVRWQDLKDLFRKAGNVVRADVQMNH-EGRSRGNGIVLMETV 192
Query: 165 EEAKEAIRLFD 175
+EA+ AIR+FD
Sbjct: 193 QEAQMAIRMFD 203
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++GNLP+ L ++F G + A I Y+ + RSRGFG V + EA AI
Sbjct: 279 IHIGNLPWLTVDQDLLDLFNSFGKIERAAIAYE-PSGRSRGFGVVQFQTTPEAASAIEKL 337
Query: 175 DGSV 178
+G V
Sbjct: 338 NGYV 341
>gi|428305785|ref|YP_007142610.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428247320|gb|AFZ13100.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 102
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y + L+ +FAE GTV ++ DR T R RGFGFV M S E AI
Sbjct: 3 IYVGNLSYDVKEGDLSHIFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSDAEEDAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|406831762|ref|ZP_11091356.1| RNA-binding protein (RRM domain) [Schlesneria paludicola DSM 18645]
Length = 101
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP++++ L +FA G V+S + D+ T R RGF FVTM +E++ EAI
Sbjct: 4 IYVGNLPFTVSEPDLMGMFARYGRVSSVRMATDKSTGRPRGFAFVTMNRMEDSDEAIVRL 63
Query: 175 DGS 177
+GS
Sbjct: 64 NGS 66
>gi|255535545|ref|YP_003095916.1| RNA-binding protein [Flavobacteriaceae bacterium 3519-10]
gi|255341741|gb|ACU07854.1| RNA-binding protein [Flavobacteriaceae bacterium 3519-10]
Length = 122
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V N+ YS SL ++F+E G V+SA+I+ DR T RSRGFGFV M S E+ K AI
Sbjct: 4 IFVSNINYSTREESLQDLFSEFGEVSSAKIITDRETGRSRGFGFVEM-SDEDGKNAIEAL 62
Query: 175 DG 176
+G
Sbjct: 63 NG 64
>gi|388521331|gb|AFK48727.1| unknown [Lotus japonicus]
Length = 285
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NLP+SM+++ + ++F + GTV EI+ + R +G+ FVTM S EEA+ A+
Sbjct: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
Query: 174 FDGSVSADGICIAIVLIEPFN--------CQHFGNGRCLVFLSYIILDVHSIH 218
FD ++ G + + L + F R +++ S + V S H
Sbjct: 146 FD-TLELSGRILRVELAKRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRSTH 197
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVA-SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+Y NL + + S+ L E F E SA IV+D + ++ G+GF++ + EEA+ AI
Sbjct: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTKEEAEAAISA 243
Query: 174 FDG 176
DG
Sbjct: 244 LDG 246
>gi|426402318|ref|YP_007021289.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|425858986|gb|AFY00022.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
Length = 104
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++YVGNL +++ L +VFAE GTV + ++ DR T RS+GF FV M + EA+ AI
Sbjct: 2 GKKIYVGNLSFNVDQDQLNQVFAEFGTVDTVNVITDRETGRSKGFAFVEMSTETEARAAI 61
Query: 172 RLFDG 176
+G
Sbjct: 62 EKLNG 66
>gi|301776322|ref|XP_002923559.1| PREDICTED: cold-inducible RNA-binding protein-like [Ailuropoda
melanoleuca]
Length = 172
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|425781538|gb|EKV19498.1| Ribosome biogenesis (Nop4), putative [Penicillium digitatum PHI26]
gi|425782769|gb|EKV20659.1| Ribosome biogenesis (Nop4), putative [Penicillium digitatum Pd1]
Length = 722
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 100 EEEEPKVAASDEAAR---------LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
E E KV A+ AA L+V +LP S T+ SLAE F+++ + A +V D+ T
Sbjct: 14 ESPETKVEATTPAAEASAAQNKRTLFVRSLPTSATTESLAEHFSQSYIIKHAVVVSDKET 73
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGS 177
S+GFGFVT VE+A+ A++ F+GS
Sbjct: 74 KVSKGFGFVTFADVEDAESALKEFNGS 100
Score = 40.0 bits (92), Expect = 0.62, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
A +++ NLP+S T +L + F G + A +V D T+R RG GFV E+A
Sbjct: 300 ATTIFIRNLPFSATDQALYDHFKTHFGPLRYARVVLDYETERPRGTGFVCFWKPEDANTC 359
Query: 171 IR 172
IR
Sbjct: 360 IR 361
>gi|308807591|ref|XP_003081106.1| Ps16 protein (ISS) [Ostreococcus tauri]
gi|116059568|emb|CAL55275.1| Ps16 protein (ISS) [Ostreococcus tauri]
Length = 1094
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R+Y GNL + M L ++ +E G+V + ++ DR T RSRGFGFVTM + EA E
Sbjct: 1013 EGRRVYFGNLSWGMDQYDLQDLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEV 1072
Query: 171 IRLFDGSVSADGICIAI 187
+ +G DG + +
Sbjct: 1073 VAQLNGQ-DVDGRVLRV 1088
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + +T SLAE+F+E V A ++ DR T RSRGF FV+M + E+ + A
Sbjct: 915 RVYVGNLSWGVTDESLAELFSEF-DVRDASVMKDRETGRSRGFAFVSMNNEEDVERASAA 973
Query: 174 FDG 176
+G
Sbjct: 974 LNG 976
>gi|410098203|ref|ZP_11293182.1| hypothetical protein HMPREF1076_02360 [Parabacteroides goldsteinii
CL02T12C30]
gi|409222476|gb|EKN15418.1| hypothetical protein HMPREF1076_02360 [Parabacteroides goldsteinii
CL02T12C30]
Length = 126
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
LY+ NL Y++T + L E+FA+ G + SA ++ DR T RSRGFGFV + AK+AI
Sbjct: 3 LYISNLSYNVTDADLNELFADYGEILSARVITDRETGRSRGFGFVELKDDNLAKKAI 59
>gi|294647277|ref|ZP_06724872.1| RNA-binding protein [Bacteroides ovatus SD CC 2a]
gi|294808522|ref|ZP_06767270.1| RNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
gi|292637353|gb|EFF55776.1| RNA-binding protein [Bacteroides ovatus SD CC 2a]
gi|294444255|gb|EFG12974.1| RNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
Length = 84
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y++ S L V E GTVAS +++ DR T RS+GF F+ M EA AI+
Sbjct: 6 LYIGNLSYNVKESDLRNVMEEYGTVASVKLITDRETRRSKGFAFIEMPDDAEANNAIKQL 65
Query: 175 DGS 177
+G+
Sbjct: 66 NGA 68
>gi|338706322|ref|YP_004673090.1| putative RNA-binding protein [Treponema paraluiscuniculi Cuniculi
A]
gi|378972859|ref|YP_005221463.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378973926|ref|YP_005222532.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378974988|ref|YP_005223596.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
DAL-1]
gi|378981835|ref|YP_005230140.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. CDC2]
gi|384421880|ref|YP_005631239.1| glycine-rich RNA-binding protein 2 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|291059746|gb|ADD72481.1| glycine-rich RNA-binding protein 2 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|335344383|gb|AEH40299.1| probable RNA-binding protein [Treponema paraluiscuniculi Cuniculi
A]
gi|374677182|gb|AEZ57475.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678252|gb|AEZ58544.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679321|gb|AEZ59612.1| putative RNA-binding protein [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|374680386|gb|AEZ60676.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
DAL-1]
Length = 89
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A++YVGNL Y+ T + LA +F++ G V S ++ D++T RS+GFGFV M S E A+ I
Sbjct: 2 SAKIYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSKGFGFVEMESAESAELVI 61
>gi|256829866|ref|YP_003158594.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
gi|256579042|gb|ACU90178.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
Length = 91
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL +S T + L +F++ G V+SA ++ DR T RSRGFGFV M E A+++I+
Sbjct: 5 IYVGNLSWSTTDADLHAMFSQYGQVSSAHVIEDRETGRSRGFGFVEMDD-EGARKSIQAL 63
Query: 175 DGS 177
+G+
Sbjct: 64 NGT 66
>gi|224128992|ref|XP_002328863.1| predicted protein [Populus trichocarpa]
gi|118482403|gb|ABK93124.1| unknown [Populus trichocarpa]
gi|222839293|gb|EEE77630.1| predicted protein [Populus trichocarpa]
Length = 131
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G L +S SL + F+ G V A ++ DR T RSRGFGFV+ S E A EA+
Sbjct: 35 SSKLFIGGLAWSTDDQSLKDAFSGFGEVTEARVITDRDTGRSRGFGFVSYESTESASEAL 94
Query: 172 RLFDGS-VSADGICIAIVLI----EPFNCQHFGN 200
DG + I + +P+N + GN
Sbjct: 95 SAMDGQELGGRNIRVGYATDKRQPQPYNSNYGGN 128
>gi|308049961|ref|YP_003913527.1| RNP-1 like RNA-binding protein [Ferrimonas balearica DSM 9799]
gi|307632151|gb|ADN76453.1| RNP-1 like RNA-binding protein [Ferrimonas balearica DSM 9799]
Length = 90
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL YS+TS L FA G V SA ++ DR T RS+GFGFV M + +E +AI+
Sbjct: 3 IYIGNLSYSVTSEDLQAAFAAHGEVLSANVIMDRETGRSKGFGFVEMPNSDEGLKAIQAL 62
Query: 175 D 175
+
Sbjct: 63 N 63
>gi|300113043|ref|YP_003759618.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
gi|299538980|gb|ADJ27297.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
Length = 118
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR-L 173
+YVGNL Y +T L F G V+SA+++ D+ ++RS+GFGFV M S E+A+ AI+ +
Sbjct: 20 IYVGNLSYQVTDEDLRAAFENYGEVSSAKVIVDKFSNRSKGFGFVEMASKEDAETAIKEM 79
Query: 174 FDGSVSADGICI 185
D + I +
Sbjct: 80 HDSDIKGRQIVV 91
>gi|339626955|ref|YP_004718598.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus TPY]
gi|379008663|ref|YP_005258114.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus DSM
10332]
gi|339284744|gb|AEJ38855.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus TPY]
gi|361054925|gb|AEW06442.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus DSM
10332]
Length = 85
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +S T LA+ FA+ V SA I+ DR T RSRGFGFV + ++A++A+
Sbjct: 5 LYVGNLAWSTTEEELAQAFAQHAQVISARIITDRETGRSRGFGFVEVAD-QDAEQAVEAM 63
Query: 175 DGS 177
+G+
Sbjct: 64 NGT 66
>gi|90076360|dbj|BAE87860.1| unnamed protein product [Macaca fascicularis]
Length = 207
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|356519124|ref|XP_003528224.1| PREDICTED: uncharacterized protein LOC100801928 [Glycine max]
Length = 656
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RL++G + YS+ + SL E+ ++ G V A I+ DR T R RGFGF+T +V+EA A++
Sbjct: 43 RLFIGGVSYSIDAQSLGEICSQYGQVVDARIIMDRETGRHRGFGFITYSNVDEASRALQA 102
Query: 174 FDG 176
DG
Sbjct: 103 LDG 105
>gi|226532482|ref|NP_001150574.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195640298|gb|ACG39617.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 253
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L Y SL + FA+ G V A+I+ DR + RSRGFGF+T S EEA AI
Sbjct: 33 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEASAAI 92
Query: 172 RLFDGSVSADGICIAI 187
DG DG I +
Sbjct: 93 TAMDGKT-LDGRNIRV 107
>gi|302814001|ref|XP_002988685.1| hypothetical protein SELMODRAFT_18499 [Selaginella moellendorffii]
gi|300143506|gb|EFJ10196.1| hypothetical protein SELMODRAFT_18499 [Selaginella moellendorffii]
Length = 135
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+AA+ + R +VG L ++ T +L + F+ GTV A++V DR T+RSRGFGFVT G
Sbjct: 1 MAAAVDEFRCFVGGLSWATTDRNLEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDEN 60
Query: 166 EAKEAIRLFDGSVSADGICIAIVLIEP 192
++AI G DG I + +P
Sbjct: 61 SMQDAIDGMHGK-DLDGRSITVSKAQP 86
>gi|298492453|ref|YP_003722630.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298234371|gb|ADI65507.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 102
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T +L+ VFAE G+V ++ DR T + RGFGFV MG+ E AI
Sbjct: 3 IYVGNLSYEVTQDTLSAVFAEYGSVRRVQLPTDRETGKLRGFGFVEMGTEAEETTAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|189423423|ref|YP_001950600.1| RNP-1 like RNA-binding protein [Geobacter lovleyi SZ]
gi|189419682|gb|ACD94080.1| RNP-1 like RNA-binding protein [Geobacter lovleyi SZ]
Length = 109
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVG+LPY T+ L +F+ AGTV S I+ D T +S+G G+V M + EAI
Sbjct: 2 AKELYVGHLPYEATADDLRRMFSVAGTVTSVHIITDPATGKSKGCGYVRMADEAQLHEAI 61
Query: 172 RLFDGSVSADGICIAIVLIEPFNCQ 196
DG++ + + I + + P Q
Sbjct: 62 ECLDGALMENRV-ITVSIANPQKAQ 85
>gi|404403808|ref|ZP_10995392.1| RNP-1 like RNA-binding protein [Alistipes sp. JC136]
Length = 105
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV +L + +S L +FA+ G VASA ++ DR T RSRGFGFV M E+A++A+
Sbjct: 3 IYVSHLSWGTSSEGLGNLFAQFGEVASANVITDRETGRSRGFGFVEMPDDEQARKAMEQL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ + +G I + P
Sbjct: 63 NGT-NFEGQTITVNEARP 79
>gi|355755275|gb|EHH59022.1| hypothetical protein EGM_09015 [Macaca fascicularis]
Length = 202
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|242018247|ref|XP_002429590.1| A-kinase anchor protein, putative [Pediculus humanus corporis]
gi|212514557|gb|EEB16852.1| A-kinase anchor protein, putative [Pediculus humanus corporis]
Length = 408
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+P+ +T L E+F+E G V S ++VYDR + +G+GF +E A A+R
Sbjct: 16 VFVGNIPFDLTEEKLKEIFSEVGPVLSFKLVYDRENGKPKGYGFCEYKDIETANSAMRNL 75
Query: 175 DG 176
+G
Sbjct: 76 NG 77
>gi|387907184|ref|YP_006337520.1| RNA-binding protein [Blattabacterium sp. (Blaberus giganteus)]
gi|387582077|gb|AFJ90855.1| RNA-binding protein [Blattabacterium sp. (Blaberus giganteus)]
Length = 90
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAI 171
+LYVGNL Y MT L + F G V +I++D T RS+GFGF+ M + E AK+AI
Sbjct: 5 KLYVGNLSYDMTEQELKKYFESVGEVTHVKIIFDESTSSKRSKGFGFIEMSNEENAKQAI 64
Query: 172 RLFDGS 177
+G+
Sbjct: 65 EKLNGT 70
>gi|73987338|ref|XP_868602.1| PREDICTED: cold-inducible RNA-binding protein isoform 4 [Canis
lupus familiaris]
Length = 219
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 49 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 107
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 108 KDAMMAMNGK-SVDGRQIRV 126
>gi|168002776|ref|XP_001754089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694643|gb|EDQ80990.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 429
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
V+ + ++ +L+VG LP M+ L EVF+EAGTV I+ D++T +SRG F+T + +
Sbjct: 9 VSRTVDSVKLFVGQLPKQMSEQQLVEVFSEAGTVHEINIIKDKLTKQSRGCCFLTYTTRQ 68
Query: 166 EAKEAIRLF 174
EA +AI +F
Sbjct: 69 EADKAIEIF 77
>gi|387018172|gb|AFJ51204.1| Cold-inducible RNA-binding protein-like [Crotalus adamanteus]
Length = 172
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|374385669|ref|ZP_09643172.1| hypothetical protein HMPREF9449_01558 [Odoribacter laneus YIT
12061]
gi|373225371|gb|EHP47705.1| hypothetical protein HMPREF9449_01558 [Odoribacter laneus YIT
12061]
Length = 100
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL + + ++L E+F E G ++SA+++ DR + RSRGFGFV M + +E ++AI
Sbjct: 3 IYISNLSHGINDANLHELFNEYGEISSAKVITDRESGRSRGFGFVEMKNDDEGQKAISEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ DG I++ + P
Sbjct: 63 N-EAEYDGRIISVAVARP 79
>gi|409044525|gb|EKM54006.1| hypothetical protein PHACADRAFT_257571 [Phanerochaete carnosa
HHB-10118-sp]
Length = 155
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A++YVGNL ++ T SL F++ G + + ++ DR T RSRGFGFVT S EA+ AI
Sbjct: 2 SAKVYVGNLSWNTTDDSLRTAFSQFGQILDSIVMRDRDTGRSRGFGFVTFSSANEAQTAI 61
>gi|427731365|ref|YP_007077602.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427367284|gb|AFY50005.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 100
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T SL VFAE G+V ++ DR T R RGFGFV M S E AI
Sbjct: 3 VYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRVRGFGFVEMSSDAEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|410995212|gb|AFV96677.1| rnp-1 like RNA-binding protein [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 90
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGN+PY + L ++F + G V+S + V D+ T R RGFGFV M + +EA +AI
Sbjct: 3 QIYVGNIPYGKDENDLKDLFGQYGEVSSVKFVNDKETGRFRGFGFVEMANQDEANKAITA 62
Query: 174 FDGS 177
+G+
Sbjct: 63 LEGN 66
>gi|355702927|gb|EHH29418.1| hypothetical protein EGK_09841 [Macaca mulatta]
Length = 202
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|426386443|ref|XP_004059694.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Gorilla
gorilla gorilla]
gi|426386445|ref|XP_004059695.1| PREDICTED: cold-inducible RNA-binding protein isoform 3 [Gorilla
gorilla gorilla]
Length = 168
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|281341352|gb|EFB16936.1| hypothetical protein PANDA_012739 [Ailuropoda melanoleuca]
Length = 167
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|116783558|gb|ABK22994.1| unknown [Picea sitchensis]
Length = 157
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++++VG L Y + +L E FA G V A+I+ DR T RSRGFGFVT S +EA A+
Sbjct: 38 SSKVFVGGLSYGVDDQTLRESFATFGDVMEAKIINDRETGRSRGFGFVTFASPDEANAAV 97
Query: 172 RLFDG 176
DG
Sbjct: 98 EAMDG 102
>gi|363543257|ref|NP_001241843.1| uncharacterized protein LOC100857047 [Zea mays]
gi|238007748|gb|ACR34909.1| unknown [Zea mays]
gi|413916459|gb|AFW56391.1| putative glycine-rich protein [Zea mays]
Length = 261
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L Y SL + FA+ G V A+I+ DR + RSRGFGF+T S EEA AI
Sbjct: 30 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEASAAI 89
Query: 172 RLFDGSVSADGICIAI 187
DG DG I +
Sbjct: 90 TAMDGKT-LDGRNIRV 104
>gi|20975276|dbj|BAB92955.1| cold inducible RNA-binding protein alpha [Hyla japonica]
Length = 162
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+++SDE +L+VG L + SL +VF + G ++ +V DR T RSRGFGFVT + E
Sbjct: 1 MSSSDEG-KLFVGGLSFDTEEQSLEQVFGKYGQISEVVVVKDRETKRSRGFGFVTFENPE 59
Query: 166 EAKEAIRLFDGSVSADGICIAI 187
+AK+A+ +G S DG I +
Sbjct: 60 DAKDAMEAMNGK-SVDGRQIRV 80
>gi|302543566|ref|ZP_07295908.1| RNA-binding protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461184|gb|EFL24277.1| RNA-binding protein [Streptomyces himastatinicus ATCC 53653]
Length = 86
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RL+VGNL Y T L ++FA G V A ++ DR T RSRGFGFV M + +A++A+
Sbjct: 4 RLHVGNLSYQTTKDDLEKLFAPFGAVMDATVITDRDTGRSRGFGFVEMADM-DAEKAMAQ 62
Query: 174 FDGSVSADGICIAI 187
DG +G C+ +
Sbjct: 63 LDGQ-EMNGRCVTV 75
>gi|220905282|ref|YP_002480594.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869581|gb|ACL49916.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 88
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM--GSVEEAKEAIR 172
+YVGNLP+S T + ++FAE G V S ++V DR T R+RGFGFV M G + A EA+
Sbjct: 5 IYVGNLPWSATEEQVQDLFAEYGNVLSVKLVSDRDTGRARGFGFVEMEDGEADSAIEALD 64
Query: 173 LF 174
F
Sbjct: 65 NF 66
>gi|218245910|ref|YP_002371281.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8801]
gi|257058958|ref|YP_003136846.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8802]
gi|218166388|gb|ACK65125.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8801]
gi|256589124|gb|ACV00011.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8802]
Length = 98
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L +VFAE GTV + DR T + RGFGFV M S ++ AI
Sbjct: 3 IYVGNLAYEITEEDLTQVFAEYGTVKRVHLPVDRETQKMRGFGFVEMASDDQEDAAIAQL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|351699548|gb|EHB02467.1| Cold-inducible RNA-binding protein, partial [Heterocephalus glaber]
Length = 167
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|338214373|ref|YP_004658434.1| RNP-1 like RNA-binding protein [Runella slithyformis DSM 19594]
gi|336308200|gb|AEI51302.1| RNP-1 like RNA-binding protein [Runella slithyformis DSM 19594]
Length = 127
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YV N+P+ L E+F E G V+SA I+ D+ T +SRGF FV M + +EAK+AI
Sbjct: 3 IYVANVPFKANDDELRELFEEFGEVSSARIIMDKFTGKSRGFAFVEMPNDDEAKQAI 59
>gi|359806849|ref|NP_001241058.1| uncharacterized protein LOC100776344 [Glycine max]
gi|255634852|gb|ACU17785.1| unknown [Glycine max]
Length = 340
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 101 EEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
EE +A++D A R L+V L ++ TS +L F E G + ++YD+VT +SRG+GF+
Sbjct: 54 EEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFI 113
Query: 160 TMGSVEEAKEAIR----LFDGSVS 179
T ++E ++A+R L DG ++
Sbjct: 114 TFKNMESTQQALRAPSKLIDGRLA 137
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY+G+L +TS L FA G + + YDR T+ SRGFGFVT + E AK+AI
Sbjct: 159 KLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDD 218
Query: 174 FDGSVSADGICI 185
+ ++ I +
Sbjct: 219 LEKTLGGRNIVV 230
>gi|393245114|gb|EJD52625.1| hypothetical protein AURDEDRAFT_111257 [Auricularia delicata
TFB-10046 SS5]
Length = 103
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A+++YVGNL ++ T +L F + G + + ++ DR T RSRGFGFVT GS +EA AI
Sbjct: 2 ASKVYVGNLSWNTTDETLRSAFQDFGQILDSIVMRDRDTGRSRGFGFVTFGSPQEADSAI 61
>gi|354568572|ref|ZP_08987736.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353540295|gb|EHC09772.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 104
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL YS++ L++VF+E GTV ++ DR T RSRGFGFV M S AI
Sbjct: 3 IYVGNLSYSVSQEELSDVFSEYGTVTRVQLPTDRETGRSRGFGFVEMESEAAETAAINAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|291228918|ref|XP_002734426.1| PREDICTED: cleavage stimulation factor subunit 2-like [Saccoglossus
kowalevskii]
Length = 220
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 107 AASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
AA+D + R ++VGN+PY T L ++F+E G V S +VYDR T + +G+GF E
Sbjct: 8 AATDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQE 67
Query: 166 EAKEAIRLFDG 176
A A+R G
Sbjct: 68 TALSAMRNLSG 78
>gi|427735179|ref|YP_007054723.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC 7116]
gi|427370220|gb|AFY54176.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC 7116]
Length = 164
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 114 RLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RLY+GNLP + S L VFAE G+ + +++ DR T + RGFGF+T+ + E+A + I
Sbjct: 4 RLYIGNLPKEEIEKSELQAVFAEEGSSITTKLIKDRKTGKCRGFGFMTVNNDEQADQIIE 63
Query: 173 LFDGSVSAD 181
++G + D
Sbjct: 64 KYNGQMFKD 72
>gi|302809382|ref|XP_002986384.1| hypothetical protein SELMODRAFT_49298 [Selaginella moellendorffii]
gi|300145920|gb|EFJ12593.1| hypothetical protein SELMODRAFT_49298 [Selaginella moellendorffii]
Length = 145
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R +VG L ++ T +L + F+ GTV A++V DR T+RSRGFGFVT G ++AI
Sbjct: 3 RCFVGGLSWATTDRNLEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQDAIDG 62
Query: 174 FDGSVSADGICIAIVLIEP 192
G DG I + +P
Sbjct: 63 MHGK-DLDGRSITVSKAQP 80
>gi|73987334|ref|XP_868600.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Canis
lupus familiaris]
Length = 185
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|395831301|ref|XP_003788741.1| PREDICTED: cold-inducible RNA-binding protein [Otolemur garnettii]
Length = 172
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L++G L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFIGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|974605|gb|AAA75104.1| single-stranded nucleic acid binding protein [Triticum aestivum]
Length = 167
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R +VG L ++ ++L + F++ G + A+I+ DR T RSRGFGFVT GS E ++AI
Sbjct: 7 RCFVGGLAWATDDNNLQQAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEE 66
Query: 174 FDGSVSADGICIAI 187
+G DG I +
Sbjct: 67 MNGK-ELDGRNITV 79
>gi|212275199|ref|NP_001130054.1| uncharacterized protein LOC100191146 [Zea mays]
gi|194688180|gb|ACF78174.1| unknown [Zea mays]
gi|414878270|tpg|DAA55401.1| TPA: glycine-rich RNA-binding protein 7 [Zea mays]
Length = 254
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG + Y SL + FA+ G V A I+ DR + RSRGFGFVT S EEA AI
Sbjct: 29 SSKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAI 88
Query: 172 RLFDGSVSADGICIAI 187
DG DG I +
Sbjct: 89 TALDGKT-LDGRSIRV 103
>gi|158292144|ref|XP_313699.3| AGAP004414-PA [Anopheles gambiae str. PEST]
gi|157017295|gb|EAA09129.3| AGAP004414-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 110 DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D++ R ++VGN+PY T +L E+F E G V S ++VYDR T + +G+GF E A
Sbjct: 12 DKSMRSVFVGNIPYDATEEALKEIFCEVGLVLSMKLVYDRETGKPKGYGFCEYKDKETAL 71
Query: 169 EAIRLFDGSV 178
A+R +G V
Sbjct: 72 SAMRNLNGYV 81
>gi|189500331|ref|YP_001959801.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189495772|gb|ACE04320.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 89
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNL Y ++ L E F E G V+SA I+ D+ T RS+GFGFV M + EA +AI
Sbjct: 3 IYIGNLDYGVSEEDLREAFGEFGEVSSANIISDKFTGRSKGFGFVEMPNDAEANQAI 59
>gi|427726014|ref|YP_007073291.1| RNP-1 like RNA-binding protein [Leptolyngbya sp. PCC 7376]
gi|427357734|gb|AFY40457.1| RNP-1 like RNA-binding protein [Leptolyngbya sp. PCC 7376]
Length = 100
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL Y +T L +VFA+ GTV +I DR T R RGF FV M EE AI
Sbjct: 3 IYIGNLSYEVTEDDLRDVFADYGTVKRVQIPTDRETSRPRGFAFVEMSKDEEELAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|154492209|ref|ZP_02031835.1| hypothetical protein PARMER_01843 [Parabacteroides merdae ATCC
43184]
gi|218261872|ref|ZP_03476557.1| hypothetical protein PRABACTJOHN_02228 [Parabacteroides johnsonii
DSM 18315]
gi|423343629|ref|ZP_17321342.1| hypothetical protein HMPREF1077_02772 [Parabacteroides johnsonii
CL02T12C29]
gi|423345248|ref|ZP_17322937.1| hypothetical protein HMPREF1060_00609 [Parabacteroides merdae
CL03T12C32]
gi|423722194|ref|ZP_17696370.1| hypothetical protein HMPREF1078_00433 [Parabacteroides merdae
CL09T00C40]
gi|154087434|gb|EDN86479.1| hypothetical protein PARMER_01843 [Parabacteroides merdae ATCC
43184]
gi|218223720|gb|EEC96370.1| hypothetical protein PRABACTJOHN_02228 [Parabacteroides johnsonii
DSM 18315]
gi|409214651|gb|EKN07660.1| hypothetical protein HMPREF1077_02772 [Parabacteroides johnsonii
CL02T12C29]
gi|409223034|gb|EKN15971.1| hypothetical protein HMPREF1060_00609 [Parabacteroides merdae
CL03T12C32]
gi|409242685|gb|EKN35446.1| hypothetical protein HMPREF1078_00433 [Parabacteroides merdae
CL09T00C40]
Length = 81
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL Y++ S L +V E GTV S +++ DR T RS+GF FV M EA+ AIR
Sbjct: 3 MYIGNLSYNVRESDLRDVMEEFGTVDSVKLIIDRDTRRSKGFAFVEMPEDSEAQNAIRDL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|125599171|gb|EAZ38747.1| hypothetical protein OsJ_23149 [Oryza sativa Japonica Group]
Length = 220
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%)
Query: 124 MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
MTS +++ F+EAG V + +I+YD+VTDRSRGF FVTM + EEA AI++F+G++
Sbjct: 1 MTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQMFNGAL 55
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++Y GNL + + + +L F + A ++++R + RSRGFGFV+ + E+A+ A+
Sbjct: 93 KIYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEA 152
Query: 174 FDG 176
DG
Sbjct: 153 LDG 155
>gi|313681522|ref|YP_004059260.1| rnp-1 like RNA-binding protein [Sulfuricurvum kujiense DSM 16994]
gi|313154382|gb|ADR33060.1| RNP-1 like RNA-binding protein [Sulfuricurvum kujiense DSM 16994]
Length = 90
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGN+PY + L ++F + G V+S + V D+ T R RGFGFV M + +EA +AI
Sbjct: 3 QIYVGNIPYGKDENDLKDLFGQYGEVSSVKFVNDKETGRFRGFGFVEMANKDEADKAITA 62
Query: 174 FDGS 177
+G+
Sbjct: 63 LEGN 66
>gi|55733834|gb|AAV59341.1| unknown protein [Oryza sativa Japonica Group]
gi|125551313|gb|EAY97022.1| hypothetical protein OsI_18943 [Oryza sativa Indica Group]
gi|222630664|gb|EEE62796.1| hypothetical protein OsJ_17599 [Oryza sativa Japonica Group]
Length = 102
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNLP+S SL + FA G + SAEI +D V RSRGFGFV E AI+
Sbjct: 19 RVYVGNLPFSANDRSLKDSFANYGAI-SAEIAWDSVMGRSRGFGFVNFEDSESVNAAIQG 77
Query: 174 FDG-SVSADGICIAIVLIEP 192
+G + + +A P
Sbjct: 78 MNGQDIGGRNVTVAQANTRP 97
>gi|15639347|ref|NP_218796.1| RNA-binding protein, [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025589|ref|YP_001933361.1| RNA-binding protein [Treponema pallidum subsp. pallidum SS14]
gi|408502236|ref|YP_006869680.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|3322634|gb|AAC65342.1| RNA-binding protein, putative [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018164|gb|ACD70782.1| possible RNA-binding protein [Treponema pallidum subsp. pallidum
SS14]
gi|408475599|gb|AFU66364.1| putative RNA-binding protein [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 105
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A++YVGNL Y+ T + LA +F++ G V S ++ D++T RS+GFGFV M S E A+ I
Sbjct: 18 SAKIYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSKGFGFVEMESAESAELVI 77
>gi|392580010|gb|EIW73137.1| hypothetical protein TREMEDRAFT_56132, partial [Tremella
mesenterica DSM 1558]
Length = 313
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P D L+VGNLPY + L ++F +AGTV A++ + +RSRG+G V MGS
Sbjct: 6 PAAVGVDGRVNLFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLN-SDNRSRGYGTVLMGS 64
Query: 164 VEEAKEAIRLFDG 176
E+A AI F+G
Sbjct: 65 REDAARAIDRFNG 77
>gi|88811230|ref|ZP_01126486.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
gi|88791769|gb|EAR22880.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
Length = 94
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+S + L E+FA G V S ++ DR T R RGFGFVTM S +A AI
Sbjct: 4 IYVGNLPFSASEDELRELFAAYGNVDSVRLMTDRDTGRPRGFGFVTM-SDTDAASAIEAL 62
Query: 175 DG 176
DG
Sbjct: 63 DG 64
>gi|392395169|ref|YP_006431771.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390526247|gb|AFM01978.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 116
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E K + A LYVGNLP++ TS L+ F + G V S+ I+ DR T RSRGFGFV +
Sbjct: 24 ESNKQEVTANMATLYVGNLPWNTTSEDLSSFFGQYGQVISSRIITDRETGRSRGFGFVEV 83
Query: 162 GSVEEAKEAIRL 173
E ++A R+
Sbjct: 84 ----EDEDATRM 91
>gi|195654321|gb|ACG46628.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|238010482|gb|ACR36276.1| unknown [Zea mays]
Length = 252
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG + Y SL + FA+ G V A I+ DR + RSRGFGFVT S EEA AI
Sbjct: 29 SSKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAI 88
Query: 172 RLFDGSVSADGICIAI 187
DG + DG I +
Sbjct: 89 TALDGK-TLDGRSIRV 103
>gi|162455777|ref|YP_001618144.1| RNA-binding protein [Sorangium cellulosum So ce56]
gi|161166359|emb|CAN97664.1| RNA-binding protein [Sorangium cellulosum So ce56]
Length = 107
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNL Y+ + SL FA +G V + DR T + RGF FVTMGS +EA AI
Sbjct: 4 RLYVGNLSYNTSRESLEAAFAGSGEVREVAMPTDRETGQPRGFAFVTMGSAQEANSAISQ 63
Query: 174 FDGSVSADGICIAI 187
+G + DG + +
Sbjct: 64 LNG-MMLDGRSLKV 76
>gi|365758528|gb|EHN00365.1| Hrp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 539
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR 152
E++ A +EE K S E+ ++++G L + T +L E F + GTV +I+ D T R
Sbjct: 142 EQQVAQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR 201
Query: 153 SRGFGFVTM---GSVEEAKEAIRLFDGSV 178
SRGFGF++ SV+E + + DG V
Sbjct: 202 SRGFGFLSFEKPSSVDEVVKTQHILDGKV 230
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 103 EPKVA----ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+PK A D+ +++VG + + E F++ GT+ A+++ D+ T +SRGFGF
Sbjct: 232 DPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGF 291
Query: 159 VTMGSVE 165
VT S +
Sbjct: 292 VTYDSAD 298
>gi|226506948|ref|NP_001149776.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195633803|gb|ACG36746.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 276
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG + Y SL + FA+ G V A I+ DR + RSRGFGFVT S EEA AI
Sbjct: 29 SSKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAI 88
Query: 172 RLFDGSVSADGICIAI 187
DG + DG I +
Sbjct: 89 TALDGK-TLDGRSIRV 103
>gi|118488717|gb|ABK96169.1| unknown [Populus trichocarpa]
Length = 241
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++++++G + + + L E F + G V A I+ DR T RSRGFGFVT S EEA AI
Sbjct: 39 SSKIFIGGISFQTDDNGLKEAFDKYGNVVEARIIMDRDTGRSRGFGFVTYTSSEEASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QAMDG 103
>gi|115456445|ref|NP_001051823.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|40714682|gb|AAR88588.1| putative RNA binding protein [Oryza sativa Japonica Group]
gi|108711961|gb|ABF99756.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711962|gb|ABF99757.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711963|gb|ABF99758.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711964|gb|ABF99759.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550294|dbj|BAF13737.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|125546344|gb|EAY92483.1| hypothetical protein OsI_14220 [Oryza sativa Indica Group]
gi|125588547|gb|EAZ29211.1| hypothetical protein OsJ_13272 [Oryza sativa Japonica Group]
gi|215695067|dbj|BAG90258.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715212|dbj|BAG94963.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764998|dbj|BAG86695.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 205
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R ++GNL +S T SL + F + G + A++V+D+ + RSRGFGFVT + ++A
Sbjct: 5 EEYRCFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDA 64
Query: 171 IRLFDGSVSADGICIAIVLIEP 192
I +G + DG I + +P
Sbjct: 65 IEGMNG-LDLDGRAITVDKAQP 85
>gi|345860560|ref|ZP_08812871.1| RNA recognition motif family protein [Desulfosporosinus sp. OT]
gi|344326414|gb|EGW37881.1| RNA recognition motif family protein [Desulfosporosinus sp. OT]
Length = 83
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
LYVGNLP++ T+ L + F+E G V S+ I+ DR T RSRGFGF+ VEEA
Sbjct: 5 LYVGNLPWNTTADELGQFFSEYGQVESSRIITDRETGRSRGFGFI---EVEEA 54
>gi|325279405|ref|YP_004251947.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 20712]
gi|324311214|gb|ADY31767.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM 20712]
Length = 106
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL Y++ L ++F E G ++SA+++ DR T RSRGFGFV M + ++AI
Sbjct: 3 IYISNLSYAVNDGDLKDLFGEYGEISSAKVITDRETGRSRGFGFVEMADDAQGQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEPFNCQHFGN 200
+ DG I + + P + GN
Sbjct: 63 N-QAEYDGKVINVTVARPRTERPAGN 87
>gi|223938031|ref|ZP_03629929.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223893245|gb|EEF59708.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 114
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY+GNL + T + + ++FA+ G V ++ D++T R+RGFGFVTM + E A A++
Sbjct: 3 KLYIGNLSFDATENDVQDLFAQHGPVTEVNLIMDKMTGRARGFGFVTMSTKEGADAAVQN 62
Query: 174 FDGS 177
+G
Sbjct: 63 LNGK 66
>gi|393788677|ref|ZP_10376804.1| hypothetical protein HMPREF1068_03084 [Bacteroides nordii
CL02T12C05]
gi|392654357|gb|EIY48005.1| hypothetical protein HMPREF1068_03084 [Bacteroides nordii
CL02T12C05]
Length = 81
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++ S L +V E GTV S +++ DR T RS+GF F+ M EAK AI
Sbjct: 3 MYVGNLSYNVKESDLRQVMEEYGTVESVKLITDRDTRRSKGFAFIEMPEASEAKNAITEL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|189465498|ref|ZP_03014283.1| hypothetical protein BACINT_01856 [Bacteroides intestinalis DSM
17393]
gi|189437772|gb|EDV06757.1| hypothetical protein BACINT_01856 [Bacteroides intestinalis DSM
17393]
Length = 81
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL Y + S L EV E GTV S I+ DR T RS+GF F+ M EA AI
Sbjct: 3 LYVGNLNYRVKESDLREVMEEYGTVDSVRIITDRETRRSKGFAFIEMPDSSEASNAINAL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|381207415|ref|ZP_09914486.1| RNA-binding region RNP-1 (RNA recognition motif) [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 117
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+YVGNL YS+T L + F + G V I+ DR+T RS+GFGFV M EA+ AIR
Sbjct: 29 IYVGNLAYSVTEEQLRDAFGQFGEVDKVSIIMDRMTGRSKGFGFVEMQDDSEAEAAIR 86
>gi|156348369|ref|XP_001621824.1| hypothetical protein NEMVEDRAFT_v1g143489 [Nematostella vectensis]
gi|156208104|gb|EDO29724.1| predicted protein [Nematostella vectensis]
Length = 89
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R Y+GNL YS+ +L E F V +++ DR T R RGFGFVT GS EE ++A
Sbjct: 3 EEYRCYIGNLSYSVDEQALEEKF-HGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKA 61
Query: 171 IRLFDGSVSADGICIAIVLIEP 192
I FDG DG + + +P
Sbjct: 62 IDEFDGQ-DFDGRPMKVNQAQP 82
>gi|390952073|ref|YP_006415832.1| RRM domain-containing RNA-binding protein [Thiocystis violascens
DSM 198]
gi|390428642|gb|AFL75707.1| RRM domain-containing RNA-binding protein [Thiocystis violascens
DSM 198]
Length = 92
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
R+YVGNLPYS+ L ++F E G +A+AE++ D+ + +S+GFGFV M
Sbjct: 2 RIYVGNLPYSVADDDLRDIFGEYGELAAAEVIKDKFSGQSKGFGFVEM 49
>gi|119357086|ref|YP_911730.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119354435|gb|ABL65306.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNL Y+++ L + F++ G V SA I+ D+ + RS+GFGF+ M + EA+EAI
Sbjct: 3 IYIGNLAYTVSEDDLRDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAI 59
>gi|115462709|ref|NP_001054954.1| Os05g0223200 [Oryza sativa Japonica Group]
gi|55733832|gb|AAV59339.1| unknown protein [Oryza sativa Japonica Group]
gi|113578505|dbj|BAF16868.1| Os05g0223200 [Oryza sativa Japonica Group]
gi|215741183|dbj|BAG97678.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ +R+YVGNLPY SL + F+ G V+S EI DR T RSRGFGFV+ + A +A
Sbjct: 21 QESRVYVGNLPYRADERSLKDSFSNYGAVSS-EIAVDRETGRSRGFGFVSFQDSKSASDA 79
Query: 171 IRLFDG 176
I+ +G
Sbjct: 80 IKGMNG 85
>gi|375149693|ref|YP_005012134.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361063739|gb|AEW02731.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 112
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +++T L FAE G V+SA ++ D+ T +SRGFGFV M + E AK+AI
Sbjct: 3 IYVSNLSFNVTDDDLEGFFAEYGEVSSARVITDKFTGKSRGFGFVEMPNDEAAKKAITEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
DG +G I + P
Sbjct: 63 DGG-RVEGREIKVAEARP 79
>gi|303286031|ref|XP_003062305.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455822|gb|EEH53124.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 227
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 101 EEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
E P+ D +A ++Y GNL + M L ++ E G VA + ++ DR T RSRGFGFV
Sbjct: 133 ERAPRERNYDFDARKVYFGNLSWGMDHLDLQDLCGEYGEVADSRLITDRETGRSRGFGFV 192
Query: 160 TMGSVEEAKEAIRLFDGSVSADGICIAI 187
TM S E+A++ + +G DG + +
Sbjct: 193 TMSSAEQAEKVVNGLNGQ-DVDGRVLRV 219
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + + S L +VFAE A ++ D T RSRGFGFV + S E A++AI
Sbjct: 44 KLYVGNLSWGVDDSMLTDVFAEYDASGIA-VISDMNTGRSRGFGFVEVPSQEIAEKAIAE 102
Query: 174 FDGSVSADGICIAIVLIE 191
DG+ DG I + + E
Sbjct: 103 LDGA-DVDGRPIRVNISE 119
>gi|333379583|ref|ZP_08471304.1| hypothetical protein HMPREF9456_02899 [Dysgonomonas mossii DSM
22836]
gi|332884976|gb|EGK05229.1| hypothetical protein HMPREF9456_02899 [Dysgonomonas mossii DSM
22836]
Length = 96
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +S TS SL E+F G V S +I+ DR T RSRGFGFV M + E ++AI
Sbjct: 3 IYVSNLNFSTTSESLQELFTAYGEVESTKIITDRETGRSRGFGFVEMPNDAEGQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ + +G I + + P
Sbjct: 63 N-NADYEGKTITVTIARP 79
>gi|88601667|ref|YP_501845.1| RNA recognition motif-containing protein [Methanospirillum hungatei
JF-1]
gi|88187129|gb|ABD40126.1| RNA-binding region RNP-1 (RNA recognition motif) [Methanospirillum
hungatei JF-1]
Length = 103
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 6/61 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +LYVGNLPYS S L+E+F+ G V SA+I+ ++GFGFV MG+ EEA+ A
Sbjct: 2 EGKKLYVGNLPYSTNESQLSELFSSYGEVVSAKII------ENKGFGFVEMGTSEEAQAA 55
Query: 171 I 171
+
Sbjct: 56 L 56
>gi|406954527|gb|EKD83359.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 95
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLPYS T L +F G V +A I+ DR T RS+GFGFV M + A+EAI+
Sbjct: 3 IYVGNLPYSATEEQLKTMFGVYGEVTTASIIKDRDTGRSKGFGFVEMTNDAAAEEAIQAL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ +G I + P
Sbjct: 63 N-ETDMNGRNIKVNQARP 79
>gi|333379577|ref|ZP_08471298.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
gi|332884970|gb|EGK05223.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
Length = 99
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ L Y + + L F E G + SA+++ DR T RS+G+GFV M + E+A +AI
Sbjct: 3 IFIAGLSYDVNDADLNTFFKEYGVINSAKVIMDRSTSRSKGYGFVEMDNNEDANKAISKL 62
Query: 175 DGSVSADGICIAIVLIEP---FNCQHFGNGR 202
+G V DG I++ P N +GN R
Sbjct: 63 NG-VEYDGRTISVSEARPRQERNNNSYGNNR 92
>gi|42521942|ref|NP_967322.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|39574472|emb|CAE77976.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
Length = 104
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++YVGNL Y++ L +FA+ GTV S I+ DR T RS+GF FV M S EA AI
Sbjct: 2 GKKIYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAAI 61
Query: 172 RLFDG 176
+G
Sbjct: 62 DKLNG 66
>gi|428210908|ref|YP_007084052.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
gi|427999289|gb|AFY80132.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
Length = 109
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 36/63 (57%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L VFAE GTV + DR T R RGFGFV M + E AI
Sbjct: 3 IYVGNLSYDVTEQDLNSVFAEYGTVKRVNLPTDRETGRPRGFGFVEMDTDAEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|372269331|ref|ZP_09505379.1| RNA-binding region RNP-1 (RNA recognition motif) [Alteromonas sp.
S89]
Length = 89
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+Y+GNL Y +TS L E F G ++ A ++ DR T RS+GFGFV M + +EA++AI
Sbjct: 3 IYIGNLAYGVTSDELHEAFGAFGEISRATVITDRETGRSKGFGFVEMPNDDEARKAI 59
>gi|218438646|ref|YP_002376975.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
gi|218171374|gb|ACK70107.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
Length = 105
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L EVFAE GTV+ + DR T R RGFGFV M + E AI
Sbjct: 3 IYVGNLYYEVTQDELREVFAEYGTVSRVYLPVDRETGRMRGFGFVEMSTDAEEDTAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|344307815|ref|XP_003422574.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Loxodonta africana]
Length = 169
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|403218287|emb|CCK72778.1| hypothetical protein KNAG_0L01580 [Kazachstania naganishii CBS
8797]
Length = 305
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 35 LFKTKSPKPLK------LEKAQ-NPSALHLSLLSLSYFRQFSASF------DGFQVTEDS 81
LF P P + LEK + NP+ L+ LS Q+ F +V ED
Sbjct: 11 LFSRGPPLPYRKPIDYPLEKRRTNPNITGLTKY-LSSLHQYKEEFPRGTANKHLRVYEDV 69
Query: 82 QDEPETEQEE-----EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+ E E E ++ EE + A E+P +A +D ++VG LPY T L E+F +
Sbjct: 70 KHEKEKEMDKLQLLCEEWKPA----EDPNIAGTDPYKTIFVGRLPYDTTELDLQEIFGKY 125
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
G V +V D+ +++SRG+GFV + +K +R
Sbjct: 126 GAVDKVRVVRDK-SNKSRGYGFVLFADPQASKRTMR 160
>gi|398410055|ref|XP_003856481.1| hypothetical protein MYCGRDRAFT_31414 [Zymoseptoria tritici IPO323]
gi|339476366|gb|EGP91457.1| hypothetical protein MYCGRDRAFT_31414 [Zymoseptoria tritici IPO323]
Length = 740
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 73 DGFQVTEDSQDEPETEQ----EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSS 128
+G DS E EQ +E AV+ + K AA + L+V LP + TS S
Sbjct: 12 NGAAAAVDSAPEDRAEQLLPTKENLTTAAVDAPADEKEAAVQQRRSLFVRQLPSNTTSES 71
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188
L E+F+E V A V D T RG+GFVT E+A +A F G + DG + +
Sbjct: 72 LTELFSETFPVKHATAVTDPATKECRGYGFVTFADAEDAAQAKSQFHGHI-IDGKKLRVE 130
Query: 189 LIEP 192
+ EP
Sbjct: 131 IAEP 134
Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D ++ L++ NLP++ T L + FA+ G A +V D T+RS+G GFV + ++A
Sbjct: 312 DRSSTLFIRNLPFTCTDEDLEDHFAQFGNTRYARVVMDYGTERSKGTGFVCFYNKDDADA 371
Query: 170 AIR 172
+R
Sbjct: 372 CVR 374
>gi|298490358|ref|YP_003720535.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298232276|gb|ADI63412.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 111
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T +L +VFAE G+V +I DR T R RGF FV M S E AI
Sbjct: 3 VYVGNLSYEVTQDALTQVFAEYGSVKRVQIPTDRETGRVRGFAFVEMSSDAEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|218248972|ref|YP_002374343.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8801]
gi|257062057|ref|YP_003139945.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8802]
gi|218169450|gb|ACK68187.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8801]
gi|256592223|gb|ACV03110.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 8802]
Length = 155
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 114 RLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RLYVGNLP S+ +L ++FA+AG + S +++ DR T + RGF FVT+ + E A E I
Sbjct: 4 RLYVGNLPKESIERQALQDMFADAGEIMSTKVIKDRKTGKCRGFAFVTVATDELADEFIE 63
Query: 173 LFDG 176
++G
Sbjct: 64 KYNG 67
>gi|168704512|ref|ZP_02736789.1| RNA-binding protein [Gemmata obscuriglobus UQM 2246]
Length = 129
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGN+ + TS L + F++ GTV A+IV DR T RSRGF FV M + A+EAI
Sbjct: 2 AKKLYVGNISFQTTSDDLIQAFSQYGTVLGAQIVADRETGRSRGFAFVEMH--DGAEEAI 59
Query: 172 RLFDGS 177
+G+
Sbjct: 60 AALNGA 65
>gi|735966|emb|CAA56649.1| surface antigen [Entamoeba histolytica]
Length = 294
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 27 IPTNH-LPSLFKTKSPKPL-KLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84
IPT H P++ K K L +L+K N L DG + DS+D+
Sbjct: 108 IPTKHETPTIKKKKVSSSLDELKKIANERRPKLD--------------DGKKKKTDSEDD 153
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASD----EAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q EE+EE E+E + + D E R+Y+ NLP++ T + F G +A
Sbjct: 154 QNNQQMEEDEEMINEQEHQKSMDEIDVKDWEEGRIYITNLPFNCTEDEFRKEFDRFGNIA 213
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS-VSADGICIAIVLIEPFNCQHFG 199
+ D++T +S+GFG V ++A +A D + + + +P++ Q G
Sbjct: 214 EIHLPIDKITKKSKGFGKVLFVVPQDAVKACNEMDNKFIKGRIVHVTYAKADPYSSQQTG 273
Query: 200 NGR 202
+
Sbjct: 274 ESK 276
>gi|77166221|ref|YP_344746.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|254435869|ref|ZP_05049376.1| RNA-binding protein [Nitrosococcus oceani AFC27]
gi|76884535|gb|ABA59216.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|207088980|gb|EDZ66252.1| RNA-binding protein [Nitrosococcus oceani AFC27]
Length = 119
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+YVGNL Y +T L F G V+SA+++ D+ ++RS+GFGFV M S E+A+ AI+
Sbjct: 20 IYVGNLSYQVTDEDLRAAFENYGEVSSAKVIVDKFSNRSKGFGFVEMASKEDAEAAIK 77
>gi|256423338|ref|YP_003123991.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256038246|gb|ACU61790.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 92
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + + L F+ G V+SA ++ D+ T+RSRGFGFVTM + EA++AI+
Sbjct: 3 IYVSNLSPFIVNEDLNNHFSRYGVVSSANVIIDKFTNRSRGFGFVTMPNDTEAEKAIQEM 62
Query: 175 DGSVSADGICIAIVLIEP 192
+GS+ DG IA P
Sbjct: 63 NGSL-IDGKTIAASQARP 79
>gi|153874940|ref|ZP_02002958.1| RNA-binding protein [Beggiatoa sp. PS]
gi|152068596|gb|EDN67042.1| RNA-binding protein [Beggiatoa sp. PS]
Length = 89
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL YSMT L E+F E G +++ ++ D+ T +S+GF FV M +A+ AI+
Sbjct: 3 IYVGNLSYSMTEEELKEIFTEYGEISTVNLITDKYTGQSKGFAFVEMVKQADAETAIKEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G + G+ I + P
Sbjct: 63 NGK-TIKGMSIKVNQARP 79
>gi|83773473|dbj|BAE63600.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 440
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS E+ L+VGN+P+S SL EVF + G++ + D + R +GFG+V SVEEA
Sbjct: 298 ASPESDTLFVGNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEA 357
Query: 168 KEAIRLFDGSVSADGICIAIVLIEP 192
+EA +G+ DG + + P
Sbjct: 358 REAFNELNGA-EIDGRPVRLDFSTP 381
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT- 160
EEP AS A L+VGNL +++ + L F E G ++ I+ +R T RSRGFG+V
Sbjct: 187 EEPAAGAS---ANLFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEY 243
Query: 161 MGSVEEAK--EAIRLFDGSVSADGICIAIVLIEPFNCQHFG 199
+V+ AK EA R D + I + P N + G
Sbjct: 244 TNAVDAAKAFEAKR--DTEIDGRKINLDYATGRPANREQGG 282
>gi|62857699|ref|NP_001017228.1| cold-inducible RNA-binding protein [Xenopus (Silurana) tropicalis]
gi|123910273|sp|Q28IQ9.1|CIRBP_XENTR RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|89268649|emb|CAJ83306.1| cold inducible RNA binding protein [Xenopus (Silurana) tropicalis]
Length = 166
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ +L+VG L + T SL +VF++ G VA +V DR + RSRGFGFVT + E+AK+A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 171 IRLFDGSVSADGICIAI 187
+ +G S DG I +
Sbjct: 64 MMAMNGK-SVDGRQIRV 79
>gi|395645925|ref|ZP_10433785.1| RNP-1 like RNA-binding protein [Methanofollis liminatans DSM 4140]
gi|395442665|gb|EJG07422.1| RNP-1 like RNA-binding protein [Methanofollis liminatans DSM 4140]
Length = 86
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 6/60 (10%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +RLYVGNL YS+T L E+F++ G V S +I+ D +GFGFV MGS EEA++A
Sbjct: 2 ETSRLYVGNLTYSVTEKQLEELFSQYGDVKSVKIIGD------KGFGFVEMGSPEEAEKA 55
>gi|392427255|ref|YP_006468249.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
acidiphilus SJ4]
gi|391357218|gb|AFM42917.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
acidiphilus SJ4]
Length = 82
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
LYVGNLP++ T+ L E F+ G V S+ I+ DR T RSRGFGF+ +G
Sbjct: 4 LYVGNLPWNTTADELGEFFSNYGHVESSRIITDRETGRSRGFGFIEVG 51
>gi|238505292|ref|XP_002383875.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|317151540|ref|XP_001824733.2| nucleolin protein Nsr1 [Aspergillus oryzae RIB40]
gi|220689989|gb|EED46339.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|391872083|gb|EIT81226.1| nuclear localization sequence binding protein [Aspergillus oryzae
3.042]
Length = 525
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
AS E+ L+VGN+P+S SL EVF + G++ + D + R +GFG+V SVEEA
Sbjct: 383 ASPESDTLFVGNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEA 442
Query: 168 KEAIRLFDGSVSADGICIAIVLIEP 192
+EA +G+ DG + + P
Sbjct: 443 REAFNELNGA-EIDGRPVRLDFSTP 466
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT- 160
EEP AS A L+VGNL +++ + L F E G ++ I+ +R T RSRGFG+V
Sbjct: 272 EEPAAGAS---ANLFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEY 328
Query: 161 MGSVEEAK--EAIRLFDGSVSADGICIAIVLIEPFNCQHFG 199
+V+ AK EA R D + I + P N + G
Sbjct: 329 TNAVDAAKAFEAKR--DTEIDGRKINLDYATGRPANREQGG 367
>gi|328948645|ref|YP_004365982.1| RNP-1 like RNA-binding protein [Treponema succinifaciens DSM 2489]
gi|328448969|gb|AEB14685.1| RNP-1 like RNA-binding protein [Treponema succinifaciens DSM 2489]
Length = 109
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ RLYVGNL Y+ T +L+ +F+ G V SA I+ DR T++S+GFGFV M E +AI
Sbjct: 2 SKRLYVGNLSYATTQDTLSSLFSAYGNVVSATIIIDRDTNQSKGFGFVEMEDPAETDKAI 61
Query: 172 RLFDGSVSADGICIAIVLIE 191
G DG I + E
Sbjct: 62 AKLAGK-EVDGRKIRVNYAE 80
>gi|357457429|ref|XP_003598995.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355488043|gb|AES69246.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 447
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG + Y+ SL++ F++ G V A I+ DR + RS+GFGFVT +VEEA AI+
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 174 FDG 176
DG
Sbjct: 105 LDG 107
>gi|256830132|ref|YP_003158860.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
gi|256579308|gb|ACU90444.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
Length = 89
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+S T + +FA G VA+ +++ DR T R+RGFGFV M S A+EAI
Sbjct: 5 IYVGNLPWSATEQDVETLFATYGQVANVKLISDRETGRARGFGFVEMES--GAEEAIAAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|428207270|ref|YP_007091623.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428009191|gb|AFY87754.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 165
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 114 RLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
RLY+GNLP + L VFA+AG+ + +++ DR T + RGFGFVT+ + E+A E I
Sbjct: 4 RLYIGNLPKDEVDRQELQAVFADAGSNVTTKVIKDRKTGKCRGFGFVTVNNDEQADEIIE 63
Query: 173 LFDG 176
++G
Sbjct: 64 KYNG 67
>gi|297741610|emb|CBI32742.3| unnamed protein product [Vitis vinifera]
Length = 127
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 121 PYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSA 180
P + ++L +F+E G V A ++YDR T RSRGFGFVT S EE AI DG V
Sbjct: 51 PPARRENTLETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDG-VDL 109
Query: 181 DGICIAIVLIEPFNCQHF 198
+G I + + E + F
Sbjct: 110 NGRSIRVTMAEARPRRQF 127
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 143 EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
E++YD++T RSRGFGFVTM +VEE + A + F+G
Sbjct: 3 EVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNG 36
>gi|6911144|gb|AAF31403.1|AF200322_1 putative glycine-rich RNA binding protein 3 [Catharanthus roseus]
Length = 164
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A++D R +VG L ++ T SL+E F++ G + ++I+ DR T RSRGFGFVT +
Sbjct: 1 MASADVEYRCFVGGLAWATTDQSLSEAFSQYGEILESKIINDRETGRSRGFGFVTFKDEQ 60
Query: 166 EAKEAIRLFDGSVSADGICIAI 187
++AI +G + DG I +
Sbjct: 61 SMRDAIEGMNGQ-TLDGRNITV 81
>gi|294884849|gb|ADF47435.1| bruno-like protein [Dugesia japonica]
Length = 372
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 19/134 (14%)
Query: 52 PSALHLSLLSLSYFRQFSASFDGFQVTE----DSQD---EPETE--QEEEEEEEAVEEEE 102
P ALHLS L S F Q GF + + SQ+ P T Q ++ +++ +++
Sbjct: 227 PEALHLSSL-YSMFPQC-----GFNINQPLGLSSQNVYQNPATLSLQFQQTQKDGMKDS- 279
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
+ E L++ +LP ++LA++FA G V SA++ DR T++S+ FGFV+
Sbjct: 280 ---IVTGPEGCNLFIYHLPQDFGDTALAQLFAPFGNVISAKVYLDRATNQSKCFGFVSFD 336
Query: 163 SVEEAKEAIRLFDG 176
+ A+ AIR +G
Sbjct: 337 NASSAEGAIRGMNG 350
>gi|152990027|ref|YP_001355749.1| RNA-binding protein RNP-1 [Nitratiruptor sp. SB155-2]
gi|151421888|dbj|BAF69392.1| RNA-binding protein RNP-1 [Nitratiruptor sp. SB155-2]
Length = 89
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNLPYS + E+FA+ G V S +++ DR T R RGFGFV M A AI
Sbjct: 3 QIYVGNLPYSSNEEDVRELFAQYGEVTSVKLINDRETGRPRGFGFVEMDD-SSADSAIEA 61
Query: 174 FDGS 177
DGS
Sbjct: 62 LDGS 65
>gi|294775690|ref|ZP_06741196.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|294450473|gb|EFG18967.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 84
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++ L EV E GTV S +++ DR T RS+GF FV M EA AI+
Sbjct: 6 MYVGNLSYNVKEVDLREVMEEYGTVGSVKLIIDRDTRRSKGFAFVEMPETSEASNAIKQL 65
Query: 175 DG 176
+G
Sbjct: 66 NG 67
>gi|443326242|ref|ZP_21054903.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC 7305]
gi|442794168|gb|ELS03594.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC 7305]
Length = 101
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGN+PY +T L+ VFA+ GTV + DR + R RGFGFV M + E +AI
Sbjct: 3 IYVGNIPYKVTEEDLSGVFADYGTVKRVYLPTDRESGRMRGFGFVEMANEAEEDKAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|332709842|ref|ZP_08429799.1| RRM domain RNA-binding protein [Moorea producens 3L]
gi|332351440|gb|EGJ31023.1| RRM domain RNA-binding protein [Moorea producens 3L]
Length = 96
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL Y +TS +L EVF + GTV+ + DR T + RGF FV MG+ ++ + AI
Sbjct: 3 IYIGNLDYQVTSENLQEVFQDYGTVSKVVVPKDRETGQGRGFAFVDMGTTDQEESAIAEL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|153806393|ref|ZP_01959061.1| hypothetical protein BACCAC_00656 [Bacteroides caccae ATCC 43185]
gi|423218631|ref|ZP_17205127.1| hypothetical protein HMPREF1061_01900 [Bacteroides caccae
CL03T12C61]
gi|149131070|gb|EDM22276.1| hypothetical protein BACCAC_00656 [Bacteroides caccae ATCC 43185]
gi|392628134|gb|EIY22169.1| hypothetical protein HMPREF1061_01900 [Bacteroides caccae
CL03T12C61]
Length = 81
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y++ S L V E GTVAS +++ DR T RS+GF FV M EA I+
Sbjct: 3 LYIGNLSYNVKESDLRNVMEEYGTVASVKLITDRETRRSKGFAFVEMPDDAEANNVIKQL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|427738497|ref|YP_007058041.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC 7116]
gi|427373538|gb|AFY57494.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC 7116]
Length = 95
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y ++ L EVFAE GTV +I DR T R RGF FV M S + ++AI
Sbjct: 3 IYVGNLSYEVSQEGLNEVFAEYGTVKRVQIPTDRETGRVRGFAFVEMESEADEEKAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|425455329|ref|ZP_18835049.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9807]
gi|389803795|emb|CCI17308.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9807]
Length = 100
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L VFAE GTV + D+ T + RGFGFV M S EE +AI
Sbjct: 3 IYVGNLVYEVTKEDLQGVFAEYGTVVRVYLPVDQATGKMRGFGFVEMSSDEEEAKAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|242766029|ref|XP_002341092.1| ribosome biogenesis (Nop4), putative [Talaromyces stipitatus ATCC
10500]
gi|218724288|gb|EED23705.1| ribosome biogenesis (Nop4), putative [Talaromyces stipitatus ATCC
10500]
Length = 715
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 76 QVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAE 135
+++ED +P+T +E E+ E + A L+V +LP S T+ L F++
Sbjct: 10 RLSEDGSFKPQTAEEIVLEKNETNGESKETPAKPQMRRELFVRSLPASATTEKLTGFFSQ 69
Query: 136 AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192
+ + A +V D T +S+G+GFVT +E+A+ A+ F+G V +G I + + +P
Sbjct: 70 SYVIKHATVVIDPETKQSKGYGFVTFADIEDAQRALEEFNG-VEFEGRKIKVEVAQP 125
>gi|350535477|ref|NP_001233126.1| cold-inducible RNA-binding protein [Sus scrofa]
gi|330847371|gb|AEC46651.1| cold inducible RNA binding protein transcript variant 3 [Sus
scrofa]
Length = 144
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSR FGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|427416267|ref|ZP_18906450.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425758980|gb|EKU99832.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 89
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y + + L VFA+ GTV S + DR T R RGFGFV+MG+ E EAI
Sbjct: 3 IYVGNLSYEVIEAELTAVFAKYGTVRSIYLPTDRDTGRLRGFGFVSMGAESEETEAIEAL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGT 65
>gi|333383685|ref|ZP_08475342.1| hypothetical protein HMPREF9455_03508 [Dysgonomonas gadei ATCC
BAA-286]
gi|332827424|gb|EGK00176.1| hypothetical protein HMPREF9455_03508 [Dysgonomonas gadei ATCC
BAA-286]
Length = 102
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR-L 173
+YV NL +S TS SL E+FA G V SA+I+ DR + RSRGFGFV M + E + AI L
Sbjct: 3 IYVSNLNFSTTSESLQELFAAYGEVESAKIITDRESGRSRGFGFVEMPNDTEGQNAISGL 62
Query: 174 FDGSVSADGICIAIVLIEP 192
D +G I + + P
Sbjct: 63 HD--TDFEGKTIGVSVARP 79
>gi|186685885|ref|YP_001869081.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
gi|186468337|gb|ACC84138.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
Length = 109
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T +L+ VFAE G+V ++ DR T R RGF FV M S +E +AI
Sbjct: 3 IYVGNLSYEVTQDALSTVFAEYGSVKRVQLPTDRETGRLRGFAFVEMSSEDEETKAIESL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|150003131|ref|YP_001297875.1| RNA-binding protein [Bacteroides vulgatus ATCC 8482]
gi|319640487|ref|ZP_07995208.1| RNA-binding protein [Bacteroides sp. 3_1_40A]
gi|345518010|ref|ZP_08797470.1| hypothetical protein BSFG_01661 [Bacteroides sp. 4_3_47FAA]
gi|423313684|ref|ZP_17291620.1| hypothetical protein HMPREF1058_02232 [Bacteroides vulgatus
CL09T03C04]
gi|149931555|gb|ABR38253.1| putative RNA-binding protein [Bacteroides vulgatus ATCC 8482]
gi|254835205|gb|EET15514.1| hypothetical protein BSFG_01661 [Bacteroides sp. 4_3_47FAA]
gi|317387865|gb|EFV68723.1| RNA-binding protein [Bacteroides sp. 3_1_40A]
gi|392684619|gb|EIY77943.1| hypothetical protein HMPREF1058_02232 [Bacteroides vulgatus
CL09T03C04]
Length = 81
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++ L EV E GTV S +++ DR T RS+GF FV M EA AI+
Sbjct: 3 MYVGNLSYNVKEVDLREVMEEYGTVGSVKLIIDRDTRRSKGFAFVEMPETSEASNAIKQL 62
Query: 175 DG 176
+G
Sbjct: 63 NG 64
>gi|212691728|ref|ZP_03299856.1| hypothetical protein BACDOR_01223 [Bacteroides dorei DSM 17855]
gi|423242403|ref|ZP_17223511.1| hypothetical protein HMPREF1065_04134 [Bacteroides dorei
CL03T12C01]
gi|212665629|gb|EEB26201.1| hypothetical protein BACDOR_01223 [Bacteroides dorei DSM 17855]
gi|392639196|gb|EIY33022.1| hypothetical protein HMPREF1065_04134 [Bacteroides dorei
CL03T12C01]
Length = 81
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++ L EV E GTV S +++ DR T RS+GF FV M EA AI+
Sbjct: 3 MYVGNLSYNVKEVDLREVMEEYGTVGSVKLIVDRDTRRSKGFAFVEMPETSEASNAIKQL 62
Query: 175 DG 176
+G
Sbjct: 63 NG 64
>gi|50286801|ref|XP_445830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525136|emb|CAG58749.1| unnamed protein product [Candida glabrata]
Length = 425
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 96 EAVEEEEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154
E EEE PK A +D E A ++VG L +S+ L + F G V +A ++Y+R TDRSR
Sbjct: 158 EDEEEESSPKKAKTDGEPATVFVGRLSWSIDDEWLKQEFEHIGGVVAARVMYERGTDRSR 217
Query: 155 GFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189
G+G+V A++A++ G DG I + +
Sbjct: 218 GYGYVDFEDKSYAEKAVKEMHGK-EIDGRPINVDM 251
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+F + G + S I T++ +GFG+V S+++AK+A+
Sbjct: 279 LFLGNLSFNADRDNIYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTSIDDAKKALEAL 338
Query: 175 DG 176
G
Sbjct: 339 QG 340
>gi|296414143|ref|XP_002836762.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295631601|emb|CAZ80953.1| unnamed protein product [Tuber melanosporum]
Length = 287
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+PY +T + E+F+ G V S +VYDR T R +GFGF E A A+R
Sbjct: 12 VFVGNIPYGLTEEQITEIFSSVGRVLSFRLVYDRETGRPKGFGFAEYSDQETAASAVRNL 71
Query: 175 D 175
D
Sbjct: 72 D 72
>gi|325290560|ref|YP_004266741.1| RNP-1 like RNA-binding protein [Syntrophobotulus glycolicus DSM
8271]
gi|324965961|gb|ADY56740.1| RNP-1 like RNA-binding protein [Syntrophobotulus glycolicus DSM
8271]
Length = 84
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
LYVGNLP++ +S L E FAE G V + I+ DR T RSRGFGFV
Sbjct: 5 LYVGNLPWATSSEELTEYFAEFGNVIGSRIITDRETGRSRGFGFV 49
>gi|260790683|ref|XP_002590371.1| hypothetical protein BRAFLDRAFT_216236 [Branchiostoma floridae]
gi|229275563|gb|EEN46382.1| hypothetical protein BRAFLDRAFT_216236 [Branchiostoma floridae]
Length = 222
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 108 ASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A D + R ++VGN+PY T L ++F+E G V S +VYDR T + +G+GF E
Sbjct: 12 AQDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVISFRLVYDRETGKPKGYGFCEYKDQET 71
Query: 167 AKEAIRLFDG 176
A A+R +G
Sbjct: 72 ALSAMRNLNG 81
>gi|330836185|ref|YP_004410826.1| RNP-1 like RNA-binding protein [Sphaerochaeta coccoides DSM 17374]
gi|329748088|gb|AEC01444.1| RNP-1 like RNA-binding protein [Sphaerochaeta coccoides DSM 17374]
Length = 91
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++YVGN+ Y T L ++FA+ GTV+SA I+ DR T R +GF FV M A AI
Sbjct: 2 AKKIYVGNMNYRTTEDQLRDLFAQYGTVSSANIIIDRETHRPKGFAFVEMEDDGAADAAI 61
Query: 172 RLFDGS 177
DG
Sbjct: 62 SQLDGK 67
>gi|317152646|ref|YP_004120694.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942897|gb|ADU61948.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
Length = 87
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVGNLP++ T L F G V S ++V D TDR RGFGFV MG + A EA+
Sbjct: 2 AKNLYVGNLPWNCTEEELRAAFEAYGEVRSVKLVNDHETDRPRGFGFVEMGD-QGALEAV 60
Query: 172 RLFDGSVSADGICIAIVLIEP 192
+GS S G I + P
Sbjct: 61 ENLNGS-SLGGRSIKVNEARP 80
>gi|300778389|ref|ZP_07088247.1| RNA-binding protein [Chryseobacterium gleum ATCC 35910]
gi|300503899|gb|EFK35039.1| RNA-binding protein [Chryseobacterium gleum ATCC 35910]
Length = 116
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++V N+ Y+ L ++FAE G V+SA+IV DR T RSRGFGFV MG +E K+AI
Sbjct: 3 IFVSNINYATKEYELHDLFAEFGDVSSAKIVTDRETGRSRGFGFVEMGD-DEGKQAI 58
>gi|160884538|ref|ZP_02065541.1| hypothetical protein BACOVA_02523 [Bacteroides ovatus ATCC 8483]
gi|237718602|ref|ZP_04549083.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|299145918|ref|ZP_07038986.1| RNA-binding protein [Bacteroides sp. 3_1_23]
gi|336413424|ref|ZP_08593776.1| hypothetical protein HMPREF1017_00884 [Bacteroides ovatus
3_8_47FAA]
gi|383111295|ref|ZP_09932108.1| hypothetical protein BSGG_4516 [Bacteroides sp. D2]
gi|423286638|ref|ZP_17265489.1| hypothetical protein HMPREF1069_00532 [Bacteroides ovatus
CL02T12C04]
gi|423296424|ref|ZP_17274509.1| hypothetical protein HMPREF1070_03174 [Bacteroides ovatus
CL03T12C18]
gi|156110277|gb|EDO12022.1| hypothetical protein BACOVA_02523 [Bacteroides ovatus ATCC 8483]
gi|229452062|gb|EEO57853.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298516409|gb|EFI40290.1| RNA-binding protein [Bacteroides sp. 3_1_23]
gi|313696981|gb|EFS33816.1| hypothetical protein BSGG_4516 [Bacteroides sp. D2]
gi|335938468|gb|EGN00358.1| hypothetical protein HMPREF1017_00884 [Bacteroides ovatus
3_8_47FAA]
gi|392670147|gb|EIY63632.1| hypothetical protein HMPREF1070_03174 [Bacteroides ovatus
CL03T12C18]
gi|392675325|gb|EIY68767.1| hypothetical protein HMPREF1069_00532 [Bacteroides ovatus
CL02T12C04]
Length = 81
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y++ S L V E GTVAS +++ DR T RS+GF F+ M EA +AI
Sbjct: 3 LYIGNLSYNVKESDLRHVMEEYGTVASVKLITDRETRRSKGFAFIEMPDDAEAAKAIEQL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|221066816|ref|ZP_03542921.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220711839|gb|EED67207.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 83
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL YS+ +L F+ G V SA+++ DR T RSRGFGFV M + E+A++AI+
Sbjct: 5 LYVTNLGYSIDGEALRAHFSGCGEVISADVISDRETGRSRGFGFVEMSTPEQAQKAIQTL 64
Query: 175 DGSVSADGICIAIVLIEP 192
+ G + + L P
Sbjct: 65 N-DQPLGGRAVGVALARP 81
>gi|81299601|ref|YP_399809.1| RNA-binding region RNP-1 [Synechococcus elongatus PCC 7942]
gi|81168482|gb|ABB56822.1| RNA-binding region RNP-1 [Synechococcus elongatus PCC 7942]
Length = 142
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+Y+GNLP + + L VFAEAG V SA++V DR T +SRGF F T+ S E A I
Sbjct: 4 RVYIGNLPRDIEQAELDAVFAEAGEV-SAKLVTDRKTGKSRGFAFATVASDELADALIER 62
Query: 174 FDGS 177
F+G+
Sbjct: 63 FNGT 66
>gi|224539200|ref|ZP_03679739.1| hypothetical protein BACCELL_04102 [Bacteroides cellulosilyticus
DSM 14838]
gi|423225982|ref|ZP_17212449.1| hypothetical protein HMPREF1062_04635 [Bacteroides cellulosilyticus
CL02T12C19]
gi|427382277|ref|ZP_18878997.1| hypothetical protein HMPREF9447_00030 [Bacteroides oleiciplenus YIT
12058]
gi|224519185|gb|EEF88290.1| hypothetical protein BACCELL_04102 [Bacteroides cellulosilyticus
DSM 14838]
gi|392631256|gb|EIY25232.1| hypothetical protein HMPREF1062_04635 [Bacteroides cellulosilyticus
CL02T12C19]
gi|425729522|gb|EKU92373.1| hypothetical protein HMPREF9447_00030 [Bacteroides oleiciplenus YIT
12058]
Length = 81
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL Y + S L EV E GTV S I+ DR T RS+GF F+ M EA AI
Sbjct: 3 LYVGNLNYKVRESDLREVMEEYGTVDSVRIITDRETRRSKGFAFIEMPDSAEASNAINAL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|434399674|ref|YP_007133678.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
gi|428270771|gb|AFZ36712.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
Length = 94
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y ++ L EVF E GTV + DR T R RGF FV MG+ E AI
Sbjct: 3 IYVGNLDYEISQQDLEEVFTEYGTVKRVHLPTDRETGRKRGFAFVEMGTEAEEASAISAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|154494359|ref|ZP_02033679.1| hypothetical protein PARMER_03714 [Parabacteroides merdae ATCC
43184]
gi|423346931|ref|ZP_17324618.1| hypothetical protein HMPREF1060_02290 [Parabacteroides merdae
CL03T12C32]
gi|423725455|ref|ZP_17699592.1| hypothetical protein HMPREF1078_03481 [Parabacteroides merdae
CL09T00C40]
gi|154085803|gb|EDN84848.1| hypothetical protein PARMER_03714 [Parabacteroides merdae ATCC
43184]
gi|409218592|gb|EKN11560.1| hypothetical protein HMPREF1060_02290 [Parabacteroides merdae
CL03T12C32]
gi|409234579|gb|EKN27407.1| hypothetical protein HMPREF1078_03481 [Parabacteroides merdae
CL09T00C40]
Length = 80
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNL Y + L +V E GTV S +I+ DR T +S+GFGFV M E AK+AI
Sbjct: 3 IYVGNLNYRVREDDLKQVMEEYGTVESVKIIKDRETGKSKGFGFVEMPDDEAAKKAI 59
>gi|47271546|ref|NP_112409.2| cold-inducible RNA-binding protein [Rattus norvegicus]
gi|46623308|gb|AAH69219.1| Cold inducible RNA binding protein [Rattus norvegicus]
Length = 172
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + +L +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|145354241|ref|XP_001421399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581636|gb|ABO99692.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 288
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ARLYVGN+P+S T L E+FAE G V +I R RSRG+G V S EA+ A+
Sbjct: 8 SARLYVGNIPWSTTIEDLRELFAECGGVTRVDIPTGR-QGRSRGYGLVEFNSEAEAQAAV 66
Query: 172 RLFDGSVSAD 181
DG+ D
Sbjct: 67 TRMDGTPLGD 76
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++ V NLP++ TS L +VF + G V +A V T RS+G+G V + E+A+ AI+
Sbjct: 210 QIVVRNLPWTTTSEDLRQVFQQVGNVVNAVAVCHTDTGRSKGWGTVLFETREQAQAAIQG 269
Query: 174 FDG 176
F+G
Sbjct: 270 FNG 272
>gi|392402152|ref|YP_006438764.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390610106|gb|AFM11258.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 117
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL YS+T L + F+E GTV SA+++ DR T R +GF FV M + E +AI
Sbjct: 3 IYVGNLAYSVTEQDLKQAFSEFGTVQSAKMIMDRDTGRPKGFAFVEMENKSEGIKAISGM 62
Query: 175 DGSVSAD 181
+G D
Sbjct: 63 NGRSMND 69
>gi|383765116|ref|YP_005444097.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
gi|381385384|dbj|BAM02200.1| RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
Length = 166
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+Y+GNLPY + LA++F+ GTV A IV DR T RSRGFGFV M
Sbjct: 4 IYIGNLPYKTGEADLADLFSRFGTVERATIVKDRDTGRSRGFGFVEM 50
>gi|218262316|ref|ZP_03476830.1| hypothetical protein PRABACTJOHN_02504 [Parabacteroides johnsonii
DSM 18315]
gi|423343074|ref|ZP_17320788.1| hypothetical protein HMPREF1077_02218 [Parabacteroides johnsonii
CL02T12C29]
gi|218223467|gb|EEC96117.1| hypothetical protein PRABACTJOHN_02504 [Parabacteroides johnsonii
DSM 18315]
gi|409216750|gb|EKN09733.1| hypothetical protein HMPREF1077_02218 [Parabacteroides johnsonii
CL02T12C29]
Length = 80
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNL Y + L +V E GTV S +I+ DR T +S+GFGFV M E AK+AI
Sbjct: 3 IYVGNLNYRVREDDLKQVMEEYGTVESVKIIKDRETGKSKGFGFVEMPDDEAAKKAI 59
>gi|317485939|ref|ZP_07944796.1| RNA recognition domain-containing protein [Bilophila wadsworthia
3_1_6]
gi|316922807|gb|EFV44036.1| RNA recognition domain-containing protein [Bilophila wadsworthia
3_1_6]
Length = 90
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS--VEEAKEAIR 172
LYVGNLP+S T + ++FA G V S ++V DR T R+RGFGFV M S V+ A EA+
Sbjct: 5 LYVGNLPWSATEDDVRDLFAPYGEVTSVKLVSDRETGRARGFGFVEMASEGVQAAVEALD 64
Query: 173 LF 174
F
Sbjct: 65 NF 66
>gi|193598819|ref|XP_001951232.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Acyrthosiphon pisum]
gi|328706164|ref|XP_003243012.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Acyrthosiphon pisum]
Length = 386
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 110 DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D++ R ++VGN+PY T L ++F+E G V S ++VYDR T + +G+GF E A
Sbjct: 8 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVISFKLVYDRETGKPKGYGFCEYKDQETAL 67
Query: 169 EAIRLFDG------SVSADGICI--------AIVLIEPFNCQHFG 199
A+R +G ++ D C ++++ P + H+G
Sbjct: 68 SAMRNLNGYEIGGRTLRVDNACTEKSRLEMQSLMMGMPTSENHYG 112
>gi|443694236|gb|ELT95429.1| hypothetical protein CAPTEDRAFT_160825 [Capitella teleta]
Length = 548
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 107 AASDEAAR--LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
+AS+E A+ ++VGN+PY + L EVF +AG V S +VYDR T + +G+GF V
Sbjct: 16 SASEERAQRSVFVGNIPYEASEEQLKEVFQQAGPVISFRLVYDRETGKPKGYGFCEYQDV 75
Query: 165 EEAKEAIR 172
E A+ A+R
Sbjct: 76 ETAQSAMR 83
>gi|255548039|ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223545556|gb|EEF47060.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 281
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NLP S + L E+F GTV S E+ + T SRG GFVTMGS+ AK AI
Sbjct: 100 LYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAKNAIAAL 159
Query: 175 DGS 177
DGS
Sbjct: 160 DGS 162
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL +++ L + F++ GTV SA ++YDR ++R +GF++ S +E ++A
Sbjct: 202 KVYVGNLAWTVKPEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKE-RDAALS 260
Query: 174 FDG 176
F+G
Sbjct: 261 FNG 263
>gi|469072|dbj|BAA03743.1| RNA-binding gricine-rich protein-1c [Nicotiana sylvestris]
Length = 165
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R +VG L ++ T +L E F++ G V ++I+ DR T RSRGFGFVT G + ++AI
Sbjct: 7 RCFVGGLAWATTDRTLGEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSMRDAIEG 66
Query: 174 FDGSVSADGICIAI 187
+G DG I +
Sbjct: 67 MNGQ-DLDGRNITV 79
>gi|298714936|emb|CBJ27692.1| RNA recognition motif-containing protein [Ectocarpus siliculosus]
Length = 346
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
Query: 98 VEEEEEPKVAASDEAAR------LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
+++ E +VAA+ EAA+ L+VGN+P+S++ L +F G V S +V D D
Sbjct: 187 MKDWTEDRVAATAEAAKKFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGD 246
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDG 176
SRG+G V MG+ E+ ++AI+ +G
Sbjct: 247 -SRGYGSVKMGTEEDGRKAIKALNG 270
>gi|313146963|ref|ZP_07809156.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|424663365|ref|ZP_18100402.1| hypothetical protein HMPREF1205_03751 [Bacteroides fragilis HMW
616]
gi|313135730|gb|EFR53090.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|404577055|gb|EKA81793.1| hypothetical protein HMPREF1205_03751 [Bacteroides fragilis HMW
616]
Length = 81
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++ S L +V E GTV S +++ DR T RS+GF FV M EA AI+
Sbjct: 3 MYVGNLSYNVKESDLRQVMEEYGTVESVKLITDRETRRSKGFAFVEMPESSEASNAIKEL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|425447147|ref|ZP_18827139.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9443]
gi|389732378|emb|CCI03686.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC 9443]
Length = 100
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L VFAE GTV + D+ T + RGFGFV M S EE +AI
Sbjct: 3 IYVGNLVYEVTKEDLHGVFAEYGTVVRVYLPVDQATGKMRGFGFVEMSSDEEEAKAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|385808623|ref|YP_005845019.1| RRM domain-containing protein [Ignavibacterium album JCM 16511]
gi|383800671|gb|AFH47751.1| RRM domain protein [Ignavibacterium album JCM 16511]
Length = 83
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG+LP+S+ + L +F G VASA++V D+ T RS+GFGFV + EA AI
Sbjct: 4 KLFVGSLPWSVNDAELKTLFEPYGKVASAKVVTDKQTRRSKGFGFVEFETEAEASAAINA 63
Query: 174 FDGS 177
+GS
Sbjct: 64 LNGS 67
>gi|329960229|ref|ZP_08298671.1| hypothetical protein HMPREF9446_00226 [Bacteroides fluxus YIT
12057]
gi|328532902|gb|EGF59679.1| hypothetical protein HMPREF9446_00226 [Bacteroides fluxus YIT
12057]
Length = 81
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL Y++ S L +V E GTV S +++ DR T RS+GF FV M EA AI+
Sbjct: 3 MYIGNLSYNVKESDLRQVMEEYGTVESVKLIVDRDTRRSKGFAFVDMPETSEALNAIKEL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|6680946|ref|NP_031731.1| cold-inducible RNA-binding protein [Mus musculus]
gi|346644681|ref|NP_001231002.1| cold-inducible RNA-binding protein [Cricetulus griseus]
gi|46395643|sp|P60826.1|CIRBP_CRIGR RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|46397383|sp|P60825.1|CIRBP_RAT RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|46397384|sp|P60824.1|CIRBP_MOUSE RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|1060919|dbj|BAA11213.1| CIRP [Mus musculus]
gi|1783168|dbj|BAA19092.1| CIRP [Rattus norvegicus]
gi|12852647|dbj|BAB29491.1| unnamed protein product [Mus musculus]
gi|34099624|gb|AAQ57122.1| cold-inducible RNA binding protein [Cricetulus griseus]
gi|49522692|gb|AAH75699.1| Cold inducible RNA binding protein [Mus musculus]
gi|74209036|dbj|BAE21245.1| unnamed protein product [Mus musculus]
gi|115345819|gb|ABI95367.1| cold-inducible RNA-binding protein [Cricetulus griseus]
gi|148699640|gb|EDL31587.1| cold inducible RNA binding protein, isoform CRA_c [Mus musculus]
gi|149034580|gb|EDL89317.1| cold inducible RNA binding protein, isoform CRA_c [Rattus
norvegicus]
gi|149034581|gb|EDL89318.1| cold inducible RNA binding protein, isoform CRA_c [Rattus
norvegicus]
Length = 172
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + +L +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|320162535|ref|YP_004175760.1| RNA-binding domain-containing protein [Anaerolinea thermophila
UNI-1]
gi|319996389|dbj|BAJ65160.1| RNA-binding region [Anaerolinea thermophila UNI-1]
Length = 105
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+S L FA GTV SA ++ D+ + +SRGFGFV M + EA+ AI+
Sbjct: 3 IYVGNLPFSANEDDLRSAFAAYGTVTSAAVIKDQFSGQSRGFGFVEMPNQAEAEAAIQGL 62
Query: 175 DG 176
+G
Sbjct: 63 NG 64
>gi|381206512|ref|ZP_09913583.1| RNA-binding protein [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 85
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL +S++ L F++ G V+ A ++ DRV +RS+GFGFV M E A+
Sbjct: 3 IYVGNLAFSVSEDQLRSAFSQFGKVSKASVIMDRVNNRSKGFGFVEMDDAAEGNSAVEAL 62
Query: 175 DG 176
+G
Sbjct: 63 NG 64
>gi|428223294|ref|YP_007107464.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
gi|427996634|gb|AFY75329.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
Length = 165
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP + L ++F+E+G S +I+ D T + RGFGFVT+ + E A I
Sbjct: 4 RLYVGNLPAELDREGLEKIFSESGDSVSLKIISDTKTGKCRGFGFVTVETPEAATTVIEK 63
Query: 174 FDG 176
F+G
Sbjct: 64 FNG 66
>gi|345887600|ref|ZP_08838771.1| hypothetical protein HMPREF0178_01545 [Bilophila sp. 4_1_30]
gi|345041635|gb|EGW45774.1| hypothetical protein HMPREF0178_01545 [Bilophila sp. 4_1_30]
Length = 106
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS--VEEAKEAI 171
LYVGNLP+S T + ++FA G V S ++V DR T R+RGFGFV M S V+ A EA+
Sbjct: 21 LYVGNLPWSATEDDVRDLFAPYGEVTSVKLVSDRETGRARGFGFVEMASEGVQAAVEAL 79
>gi|409993905|ref|ZP_11277031.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
gi|291569285|dbj|BAI91557.1| RNA-binding protein [Arthrospira platensis NIES-39]
gi|409935253|gb|EKN76791.1| RNA-binding region RNP-1 [Arthrospira platensis str. Paraca]
Length = 103
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L VFAE G+V ++ DR T R RGFGFV M + E + AI
Sbjct: 3 IYVGNLSYEVTEDDLTAVFAEYGSVKRVKLPTDRETGRMRGFGFVEMDTEAEEQSAIDAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|323346676|gb|EGA80960.1| Hrp1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 576
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSV 178
+ SV+E + + DG V
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKV 227
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 103 EPKVA----ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+PK A D+ +++VG + + E F++ GT+ A+++ D+ T +SRGFGF
Sbjct: 229 DPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGF 288
Query: 159 VTMGSVE 165
VT S +
Sbjct: 289 VTYDSAD 295
>gi|300869358|ref|ZP_07113948.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
gi|300332657|emb|CBN59146.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
Length = 106
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL Y +T + VFAE GTV + DR T R RGFGFV M + E + AI
Sbjct: 3 LYVGNLSYQVTQEDIITVFAEYGTVKRVHLPTDRETGRPRGFGFVEMATDAEEEAAITAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|20257683|gb|AAM16007.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E K+AASD R +VG L ++ SL F+ G V ++I+ DR T RSRGFGFVT
Sbjct: 6 EREKMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTF 65
Query: 162 GSVEEAKEAIRLFDGSVSADGICIAI 187
+ + + AI +G DG I +
Sbjct: 66 STEDAMRSAIEGMNGK-ELDGRNITV 90
>gi|326490373|dbj|BAJ84850.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++++VG + Y SL + F+ G V A+++ DR + RSRGFGFVT S EEA AI
Sbjct: 30 SSKVFVGGISYGTDDQSLGDAFSNYGQVTEAKVIMDRESGRSRGFGFVTFTSSEEAGAAI 89
Query: 172 RLFDG 176
DG
Sbjct: 90 TGMDG 94
>gi|76160980|gb|ABA40453.1| RNA binding protein-like protein [Solanum tuberosum]
gi|76160996|gb|ABA40461.1| RNA binding protein-like protein [Solanum tuberosum]
Length = 150
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++RL+VG L + SL E F G V A+++ DR + RSRGFGFV + AKEA+
Sbjct: 38 SSRLFVGGLSWGTDDQSLKEAFTSFGDVVDAKVIIDRDSGRSRGFGFVNFSDEDCAKEAM 97
Query: 172 RLFDG 176
DG
Sbjct: 98 NAMDG 102
>gi|373955307|ref|ZP_09615267.1| RNP-1 like RNA-binding protein [Mucilaginibacter paludis DSM 18603]
gi|373891907|gb|EHQ27804.1| RNP-1 like RNA-binding protein [Mucilaginibacter paludis DSM 18603]
Length = 121
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+LP+ + S L EVF E G V + +I+ DR T RS+GFGF+ M E A++AI
Sbjct: 3 IFVGSLPFKVEESELKEVFEEFGEVTTVKIITDRETGRSKGFGFIEMPDDEAAQKAISEV 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|428203801|ref|YP_007082390.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
gi|427981233|gb|AFY78833.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
Length = 99
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++GNLPY ++ L +VFA+ GTV S + DR T R RGF FV M + E AI+
Sbjct: 3 IFIGNLPYEVSEDDLKQVFADYGTVKSVRLPMDRETGRVRGFAFVEMDTEAEETAAIQAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|374583239|ref|ZP_09656333.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
youngiae DSM 17734]
gi|374419321|gb|EHQ91756.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
youngiae DSM 17734]
Length = 83
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
A LYVGNLP++ T+ L E F+ G V S+ I+ DR T RSRGFGF+ + ++ A+ A
Sbjct: 2 ATTLYVGNLPWNTTAEELGEFFSAYGQVESSRIITDRETGRSRGFGFIEVEEMDAARMA 60
>gi|170076900|ref|YP_001733538.1| RNA-binding protein [Synechococcus sp. PCC 7002]
gi|169884569|gb|ACA98282.1| RNA-binding protein [Synechococcus sp. PCC 7002]
Length = 84
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++ L EVF + G V + DR T R RGFGFV M + EE +AI
Sbjct: 3 IYVGNLDYAVEEDDLREVFNDYGKVKRVYLPVDRETQRKRGFGFVEMSNDEEEDKAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|328772428|gb|EGF82466.1| hypothetical protein BATDEDRAFT_86274 [Batrachochytrium
dendrobatidis JAM81]
Length = 586
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 96 EAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
E + E + L+VGNLP+ +T L ++F +AG VA + I D + RSRG
Sbjct: 263 EVQPHKTETNAGLKHQCTTLFVGNLPFIITWQDLKDLFRQAGDVAVSHIPTDG-SGRSRG 321
Query: 156 FGFVTMGSVEEAKEAIRLFD 175
FG VTM + E+A +AI++F+
Sbjct: 322 FGIVTMTTPEDAAKAIQMFN 341
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + L+VGNL YS+ L ++F G AEIV + RSRGFGFVTM + E+
Sbjct: 409 AMKNSGITLFVGNLVYSVIWQELKDLFRSVGIPTKAEIVTSS-SGRSRGFGFVTMATQED 467
Query: 167 AKEAIRLFDGS 177
A +AI+ +G+
Sbjct: 468 ANKAIKELNGT 478
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++GNLP++M S L +VF + V S +++ RSRGFG V + E A+ I
Sbjct: 20 QVFIGNLPFTMQSKDLKDVFNKTAGVTSVKVM-SHGNGRSRGFGLVYCDTPEIAQSIITQ 78
Query: 174 FDGSVSADGICIAIVLIEPFNCQHFGNG 201
F G + G I V I+ N + G+G
Sbjct: 79 FQG-LELKGRQIE-VRIDRVNRSNIGHG 104
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ ++ VGNLP+ M L ++F A + D T RS+G G V + E+A A
Sbjct: 505 QGTQVLVGNLPFHMRWQDLKDIFRCVAEPQLANVRIDPETGRSQGVGTVRFQTEEDATRA 564
Query: 171 IRLFDGSVSADGICIAI 187
+ L + ++ I + I
Sbjct: 565 LSLNETVIAGRSIWVQI 581
>gi|325970873|ref|YP_004247064.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
gi|324026111|gb|ADY12870.1| RNP-1 like RNA-binding protein [Sphaerochaeta globus str. Buddy]
Length = 90
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++YVGN+ Y+ + L ++FA+ GTV SA I+ DR T R +GFGFV M A AI
Sbjct: 2 AKKIYVGNMSYNTSEEELRDLFAQYGTVLSANIIIDRETRRPKGFGFVEMEDDSAAIAAI 61
Query: 172 RLFDG 176
DG
Sbjct: 62 SQLDG 66
>gi|172038249|ref|YP_001804750.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|354554398|ref|ZP_08973703.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
gi|171699703|gb|ACB52684.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|353554077|gb|EHC23468.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
Length = 97
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L+EVF + G V I DR T R RGF FV M S ++ ++AI
Sbjct: 3 IYVGNLSYDVTKEDLSEVFTDYGEVKRVHIPTDRDTGRMRGFAFVEMNSDDQEEQAISTL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|326491331|dbj|BAK05765.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
V A ++ R +VGNL +S T SL + F++ G V A++V D+ + RSRGF FVT +
Sbjct: 36 VMADEDEYRCFVGNLSWSTTDESLKDAFSKYGKVTEAKVVMDKFSGRSRGFAFVTFDEKK 95
Query: 166 EAKEAIRLFDGSVSADGICIAIVLIEP 192
+EAI +G + +G I + +P
Sbjct: 96 AMEEAIEDMNG-LDLEGRAITVDKAQP 121
>gi|299529241|ref|ZP_07042685.1| RNP-1 like RNA-binding protein [Comamonas testosteroni S44]
gi|418530962|ref|ZP_13096882.1| RNP-1 like RNA-binding protein [Comamonas testosteroni ATCC 11996]
gi|298722765|gb|EFI63678.1| RNP-1 like RNA-binding protein [Comamonas testosteroni S44]
gi|371452041|gb|EHN65073.1| RNP-1 like RNA-binding protein [Comamonas testosteroni ATCC 11996]
Length = 83
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ LYV NL Y + +L F+ G V S+E++ DR T +SRGFGFV MG+ +AK AI
Sbjct: 3 SNLYVSNLGYGIDRETLKSHFSSCGDVISSEVIMDRNTGQSRGFGFVEMGTAAQAKTAI 61
>gi|293370299|ref|ZP_06616856.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|292634594|gb|EFF53126.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
Length = 84
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GNL Y++ S L V E GTVAS +++ DR T RS+GF F+ M EA +AI
Sbjct: 6 LYIGNLSYNVKESDLRHVMEEYGTVASVKLITDRETRRSKGFAFIEMPDDAEAAKAIEQL 65
Query: 175 DGS 177
+G+
Sbjct: 66 NGA 68
>gi|218437654|ref|YP_002375983.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
gi|218170382|gb|ACK69115.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
Length = 110
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGN+PY +T + EVF E GTV ++ DR + R RGF FV + + ++ AI
Sbjct: 3 IYVGNIPYQVTQDDIKEVFGEYGTVKQVKLPVDRESGRVRGFAFVDLDTEDQENSAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|146328793|ref|YP_001209360.1| RNA recognition motif-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232263|gb|ABQ13241.1| RNA recognition motif protein [Dichelobacter nodosus VCS1703A]
Length = 95
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNL Y T L F++ G V +A I+ DR + RS+GFGFV M E AK+AI
Sbjct: 4 IYVGNLSYRTTEDELRNAFSQFGDVQNASIIKDRDSGRSKGFGFVEMPDAEAAKKAI 60
>gi|428319314|ref|YP_007117196.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
gi|428242994|gb|AFZ08780.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
Length = 108
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T + VFAE GTV + DR T R RGFGFV M + E AI
Sbjct: 3 IYVGNLSYQVTQEDITTVFAEYGTVKRVHLPTDRETSRPRGFGFVEMSTDAEEDAAISAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|326509231|dbj|BAJ91532.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510271|dbj|BAJ87352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 252
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L Y+ SL + F+ G + A+I+ DR T RSRGFGF+T + E+A AI
Sbjct: 30 SSKLFVGGLSYTTDEGSLRDAFSHYGEIIDAKIIVDRDTGRSRGFGFITYAAEEQASSAI 89
Query: 172 RLFDG 176
DG
Sbjct: 90 MALDG 94
>gi|260825257|ref|XP_002607583.1| hypothetical protein BRAFLDRAFT_71461 [Branchiostoma floridae]
gi|229292931|gb|EEN63593.1| hypothetical protein BRAFLDRAFT_71461 [Branchiostoma floridae]
Length = 183
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
++ E +L+VG L + TS L F+E G + +++ DR T RSRGFGFVT +
Sbjct: 1 MSGEKEPGKLFVGGLSWDTTSEGLESTFSEYGEITDCKVITDRETGRSRGFGFVTFANDS 60
Query: 166 EAKEAIRLFDGS 177
+A A + DG+
Sbjct: 61 DAANAKKCMDGT 72
>gi|225706362|gb|ACO09027.1| Cold-inducible RNA-binding protein [Osmerus mordax]
Length = 172
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + SL +VF++ G ++ ++ DR T RSRGFGFVT + +EAK
Sbjct: 2 SDEG-KLFVGGLSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFDNPDEAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMLAMNGK-SLDGRQIRV 78
>gi|332142478|ref|YP_004428216.1| hypothetical protein MADE_1015430 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410862690|ref|YP_006977924.1| hypothetical protein amad1_15375 [Alteromonas macleodii AltDE1]
gi|327552500|gb|AEA99218.1| hypothetical protein MADE_1015430 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410819952|gb|AFV86569.1| hypothetical protein amad1_15375 [Alteromonas macleodii AltDE1]
Length = 117
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+ V NLP S T +L ++F E GT+AS ++V D T+ S+GFGFV M + EE +AI
Sbjct: 3 ILVRNLPKSFTQENLEDLFFEFGTIASCDLVMDEATNLSKGFGFVEMSTQEETDKAIEKL 62
Query: 175 DGSVSADGICIAI 187
+ V DG I +
Sbjct: 63 NAKV-IDGKKIRV 74
>gi|149192518|ref|ZP_01870698.1| RNA-binding protein [Vibrio shilonii AK1]
gi|148833650|gb|EDL50707.1| RNA-binding protein [Vibrio shilonii AK1]
Length = 151
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P + LYVGNLPY S + E+FAE G V + ++ D+ T + RGFGFV M S
Sbjct: 53 PSAETTKSTKTLYVGNLPYKANESHVKELFAEHGEVFAVRLMKDKRTGKRRGFGFVVMAS 112
Query: 164 VEEAKEAIRLFD 175
+AK AI+ +
Sbjct: 113 -SDAKAAIKALN 123
>gi|408398205|gb|EKJ77338.1| hypothetical protein FPSE_02416 [Fusarium pseudograminearum CS3096]
Length = 128
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++LYVGNL ++ T +L + F+E G V + I+ DR T R+RGFGFVT + E+A A+
Sbjct: 2 SKLYVGNLSWNTTDDTLRQTFSEFGEVTDSIIMRDRETGRARGFGFVTFSTEEQANAAV 60
>gi|302756609|ref|XP_002961728.1| hypothetical protein SELMODRAFT_140819 [Selaginella moellendorffii]
gi|300170387|gb|EFJ36988.1| hypothetical protein SELMODRAFT_140819 [Selaginella moellendorffii]
Length = 130
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A++L++G L + + +L FA G V A ++ DR T RSRGFGFVT + EAK A+
Sbjct: 9 ASKLFIGGLAWGVDDGTLRTAFANYGEVTEARVIMDRETGRSRGFGFVTFENDNEAKAAV 68
Query: 172 RLFDG 176
+ DG
Sbjct: 69 QGMDG 73
>gi|399931797|gb|AFP57448.1| RNA-binding glycine-rich protein [Nicotiana clevelandii]
Length = 144
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL + FA G V A ++ DR + RSRGFGFV E A EAI+
Sbjct: 39 KLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESANEAIKA 98
Query: 174 FDG 176
DG
Sbjct: 99 MDG 101
>gi|399031232|ref|ZP_10731328.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
gi|398070499|gb|EJL61796.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
Length = 119
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+LP+S+ + L E F G V S +I+ D+ T RS+GFGFV M + +EA++AI
Sbjct: 3 IFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFVEMTNDDEAQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ + G I + EP
Sbjct: 63 NGA-TVQGRAIVVNKSEP 79
>gi|381186866|ref|ZP_09894434.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
gi|379651172|gb|EIA09739.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
Length = 120
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+LP+S+ + L E F G V S +I+ D+ T RS+GFGFV M + +EA++AI
Sbjct: 3 IFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFVEMTNDDEAQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ + G I + EP
Sbjct: 63 NGA-TVQGRAIVVNKSEP 79
>gi|375145012|ref|YP_005007453.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361059058|gb|AEV98049.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 105
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +++ L + FA G + SA+I+ DR T +SRGFGFV M + EAK+AI
Sbjct: 3 IYVSNLGFNVQDEDLKDFFAPYGEITSAKIIMDRETGKSRGFGFVEMPNDAEAKKAIAEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
D ++ +G I +V P
Sbjct: 63 DQAM-VEGRAIKVVEARP 79
>gi|345879103|ref|ZP_08830782.1| hypothetical protein Rifp1Sym_dl00160 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223892|gb|EGV50316.1| hypothetical protein Rifp1Sym_dl00160 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 93
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNL ++ T L E+FA G V SA+++ DR T RSRGFGFV M A+ AI
Sbjct: 5 IYVGNLSWNTTDDELHELFAPYGAVDSAKVIMDRETGRSRGFGFVEMSDNSAAQSAI 61
>gi|258570675|ref|XP_002544141.1| hypothetical protein UREG_03658 [Uncinocarpus reesii 1704]
gi|237904411|gb|EEP78812.1| hypothetical protein UREG_03658 [Uncinocarpus reesii 1704]
Length = 1075
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163
P S A+L V NL Y +T + L ++F G + S I+YDR RS G FVT
Sbjct: 846 PPPEQSTSGAKLRVNNLHYDITENDLEDLFTRIGPILSRSILYDRAG-RSEGIAFVTYKR 904
Query: 164 VEEAKEAIRLFDGSVSADGICIAIVLIE 191
+ +A+ AIR FDG+ +A G I + L++
Sbjct: 905 LVDAQTAIREFDGA-NAKGQPIRLTLVQ 931
>gi|345864924|ref|ZP_08817119.1| RNP-1 like RNA-binding protein [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345124004|gb|EGW53889.1| RNP-1 like RNA-binding protein [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 91
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNL ++ T L E+FA G V SA+++ DR T RSRGFGFV M A+ AI
Sbjct: 3 IYVGNLSWNTTDDELHELFAPYGAVDSAKVIMDRETGRSRGFGFVEMSDNSAAQSAI 59
>gi|334120717|ref|ZP_08494795.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
gi|333455989|gb|EGK84627.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
Length = 110
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T + VFAE GTV + DR T R RGFGFV M + E AI
Sbjct: 3 IYVGNLSYQVTQEDITTVFAEYGTVKRVHLPTDRETSRPRGFGFVEMSTDAEEDAAISAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|148699639|gb|EDL31586.1| cold inducible RNA binding protein, isoform CRA_b [Mus musculus]
Length = 176
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + +L +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|388852088|emb|CCF54264.1| related to Nucleolar protein NOP4 [Ustilago hordei]
Length = 1057
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMT 125
+ + A D + +D++D + E +E E E PK+ A +E L+V NLPY T
Sbjct: 543 KDWEAKADESEPEDDAKDNDKAENGASGDENNDEPAERPKLPAPEEGTTLFVRNLPYQAT 602
Query: 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
L +F G + A+I D+ T+RS+G GFV + A+ A+
Sbjct: 603 EEELRNLFRTFGPLRYAKITMDKTTNRSKGTGFVCFWQADSAEAAL 648
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 103 EPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162
EPKV ++ L++ LPY+ T++ L +F+E G + A +V D+ T +S+G G+VT
Sbjct: 45 EPKVNST-----LFISRLPYTATTTDLQTMFSEIGPLKRAFVVTDQETKKSKGVGYVTFA 99
Query: 163 SVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHFGNGRCLV 205
E+A A+ GS S DG I + GN R V
Sbjct: 100 IPEDANTALEQLQGS-SLDGGSRRIQITFADQKDPTGNKRPTV 141
>gi|255322500|ref|ZP_05363645.1| RNA-binding region RNP-1 [Campylobacter showae RM3277]
gi|255300408|gb|EET79680.1| RNA-binding region RNP-1 [Campylobacter showae RM3277]
Length = 81
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNL Y MT + L + FA G V A+IV DR T+RS+GFGFV + + +A +AI
Sbjct: 3 IYVGNLSYRMTEAELKDTFAPFGEVKRAKIVKDRDTNRSKGFGFVEIENDADALKAI 59
>gi|423277174|ref|ZP_17256088.1| hypothetical protein HMPREF1203_00305 [Bacteroides fragilis HMW
610]
gi|404587650|gb|EKA92189.1| hypothetical protein HMPREF1203_00305 [Bacteroides fragilis HMW
610]
Length = 81
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL Y++ S L +V E GTV S +++ DR T RS+GF FV M EA AI+
Sbjct: 3 MYIGNLSYNVKESDLRQVMEEYGTVESVKLITDRETRRSKGFAFVEMPESSEASNAIKEL 62
Query: 175 DGS 177
+G+
Sbjct: 63 NGA 65
>gi|399931799|gb|AFP57449.1| RNA-binding glycine-rich protein [Nicotiana glauca]
Length = 144
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL + FA G V A ++ DR + RSRGFGFV E A EAI+
Sbjct: 39 KLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESANEAIKA 98
Query: 174 FDG 176
DG
Sbjct: 99 MDG 101
>gi|303246975|ref|ZP_07333251.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
gi|302491682|gb|EFL51565.1| RNP-1 like RNA-binding protein [Desulfovibrio fructosovorans JJ]
Length = 92
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+ T S+ ++FA+ G V S +++ DR T + RGFGFV M A EAIR
Sbjct: 5 IYVGNLPFRTTEESVRDLFAQYGEVQSVKLISDRETGKPRGFGFVEMDDDAAADEAIRSL 64
Query: 175 DGS 177
DG+
Sbjct: 65 DGT 67
>gi|119511522|ref|ZP_01630631.1| RNA-binding region protein [Nodularia spumigena CCY9414]
gi|119463833|gb|EAW44761.1| RNA-binding region protein [Nodularia spumigena CCY9414]
Length = 102
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T +L+ VFAE G+V ++ +R T + RGFGFV MG+ +E AI
Sbjct: 3 VYVGNLSYEVTQDTLSAVFAEYGSVKRVQLPTNRETGQLRGFGFVEMGTDDEETAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|432915990|ref|XP_004079241.1| PREDICTED: cold-inducible RNA-binding protein-like [Oryzias
latipes]
Length = 174
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L++G L + SLA F + GT+ +++ D+ T RSRGFGFV +VE+AK
Sbjct: 2 SDEG-KLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G + DG I +
Sbjct: 61 DALDAMNGK-TLDGRAIRV 78
>gi|427714064|ref|YP_007062688.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
6312]
gi|427378193|gb|AFY62145.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
6312]
Length = 103
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T S L VFAE G V ++ DR T R RGFGFV M + E AI
Sbjct: 3 IYVGNLSYDVTESDLTSVFAEYGGVKRVQLPTDRETGRMRGFGFVEMNADAEEDAAISAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|262409231|ref|ZP_06085775.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294645795|ref|ZP_06723479.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294809469|ref|ZP_06768173.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|298482319|ref|ZP_07000506.1| RNA-binding protein [Bacteroides sp. D22]
gi|336406428|ref|ZP_08587083.1| hypothetical protein HMPREF0127_04396 [Bacteroides sp. 1_1_30]
gi|345509855|ref|ZP_08789442.1| hypothetical protein BSAG_03520 [Bacteroides sp. D1]
gi|423216418|ref|ZP_17202942.1| hypothetical protein HMPREF1074_04474 [Bacteroides xylanisolvens
CL03T12C04]
gi|229446016|gb|EEO51807.1| hypothetical protein BSAG_03520 [Bacteroides sp. D1]
gi|262352978|gb|EEZ02074.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638874|gb|EFF57208.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294443341|gb|EFG12104.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|295085347|emb|CBK66870.1| RNA-binding proteins (RRM domain) [Bacteroides xylanisolvens XB1A]
gi|298271606|gb|EFI13180.1| RNA-binding protein [Bacteroides sp. D22]
gi|335934632|gb|EGM96617.1| hypothetical protein HMPREF0127_04396 [Bacteroides sp. 1_1_30]
gi|392690789|gb|EIY84043.1| hypothetical protein HMPREF1074_04474 [Bacteroides xylanisolvens
CL03T12C04]
Length = 99
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ L Y T + L +FAE G V+SA++++DR T RSRGF FV M + E ++AI
Sbjct: 3 IYISGLSYGTTDADLTNLFAEFGEVSSAKVIFDRETGRSRGFAFVEMTNDGEGQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G V D I++ + P
Sbjct: 63 NG-VEYDQKVISVSVARP 79
>gi|399931807|gb|AFP57453.1| RNA-binding glycine-rich protein [Nicotiana rustica]
Length = 144
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL + FA G V A ++ DR + RSRGFGFV E A EAI+
Sbjct: 39 KLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESANEAIKA 98
Query: 174 FDG 176
DG
Sbjct: 99 MDG 101
>gi|34540433|ref|NP_904912.1| RNA-binding protein [Porphyromonas gingivalis W83]
gi|188994532|ref|YP_001928784.1| RNA-binding protein [Porphyromonas gingivalis ATCC 33277]
gi|334147542|ref|YP_004510471.1| RNA-binding protein [Porphyromonas gingivalis TDC60]
gi|419970956|ref|ZP_14486425.1| hypothetical protein HMPREF1322_0287 [Porphyromonas gingivalis W50]
gi|34396746|gb|AAQ65811.1| RNA-binding protein [Porphyromonas gingivalis W83]
gi|188594212|dbj|BAG33187.1| RNA-binding protein [Porphyromonas gingivalis ATCC 33277]
gi|333804698|dbj|BAK25905.1| RNA-binding protein [Porphyromonas gingivalis TDC60]
gi|392609600|gb|EIW92405.1| hypothetical protein HMPREF1322_0287 [Porphyromonas gingivalis W50]
Length = 97
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI-RL 173
+YVGNL Y + L + + G V SA ++ DR T RSRGFGFV M +A+ AI L
Sbjct: 5 IYVGNLNYRVREEDLTGLLQQYGAVTSARVITDRETGRSRGFGFVEMEDENDARRAIEEL 64
Query: 174 FDGSVSADGICIAIVLIEP 192
FD + + L P
Sbjct: 65 FDQEFQGRKLIVKEALERP 83
>gi|400602999|gb|EJP70597.1| cutinase negative acting protein [Beauveria bassiana ARSEF 2860]
Length = 448
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 87 TEQEEEEEEEAVEE-EEEPKVAASDEAA-RLYVGNLPYSMTSSSLAEVFAEAGTVASAEI 144
TE ++ +A +E +E PK A SD+A L+ G+L + + ++L E F G + SA +
Sbjct: 175 TEAAPSKKRKAEDEIDEAPKKAKSDDAPMTLFAGSLSWGVDDNALYEAFKSFGNIVSARV 234
Query: 145 VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
V D+ T RSRGFG+V G E A +A G
Sbjct: 235 VTDKNTGRSRGFGYVDFGDSESATKAYEAMQG 266
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 101 EEEPKVAASDEAAR-----------LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E +P+ A+D A R L+VGNLP+ ++ + F+E VAS + D
Sbjct: 285 EGKPQDRAADRAKRHGDTLSAESDTLFVGNLPFDTEQDTVRQFFSEVAEVASVRLPTDPD 344
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
+ +GFG+VT S+E+AK A+ +G+ +G V ++
Sbjct: 345 SGNLKGFGYVTFNSIEDAKSALDAKNGASIGNGRNSRAVRLD 386
>gi|393788491|ref|ZP_10376619.1| hypothetical protein HMPREF1068_02899 [Bacteroides nordii
CL02T12C05]
gi|392655108|gb|EIY48753.1| hypothetical protein HMPREF1068_02899 [Bacteroides nordii
CL02T12C05]
Length = 115
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ L Y+++ S L E+FAE G VASA ++ DR T RS+G+GFV M E +AI
Sbjct: 3 IFIAGLSYNISDSDLTELFAEYGEVASARVISDRETGRSKGYGFVEMADEEAGNKAISAL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ DG +A+ + P
Sbjct: 63 N-EAEIDGRKLAVSVARP 79
>gi|423076693|ref|ZP_17065401.1| hypothetical protein HMPREF0322_04849 [Desulfitobacterium hafniense
DP7]
gi|361852256|gb|EHL04522.1| hypothetical protein HMPREF0322_04849 [Desulfitobacterium hafniense
DP7]
Length = 112
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVGNLP++ TS L F + G V S+ I+ DR T RSRGFGFV + E ++A R
Sbjct: 31 ATLYVGNLPWNTTSEDLNSFFGQYGQVISSRIITDRETGRSRGFGFVEV----EDEDAAR 86
Query: 173 L 173
+
Sbjct: 87 M 87
>gi|427731667|ref|YP_007077904.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427367586|gb|AFY50307.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 103
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL YS+T L +VFAE G V ++ DR T R RGFGFV M S AI+
Sbjct: 3 IYVGNLSYSVTQDDLTKVFAEYGAVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|342882418|gb|EGU83098.1| hypothetical protein FOXB_06359 [Fusarium oxysporum Fo5176]
Length = 113
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++L+VG L ++ TS +L F+E G V A ++ DR T RSRGFGFVT S EEA AI
Sbjct: 2 SKLFVGGLAWATTSDTLRAKFSEFGEVTDAIVMTDRETGRSRGFGFVTFSSQEEASAAI 60
>gi|225711846|gb|ACO11769.1| Cleavage stimulation factor 64 kDa subunit [Lepeophtheirus
salmonis]
Length = 330
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 110 DEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
D++AR ++VGN+PY T L ++F+E G V S ++VYDR + +G+GF + A
Sbjct: 12 DKSARSVFVGNIPYEATEEKLKDIFSEVGPVTSFKLVYDRENGKPKGYGFCEYKDADMAL 71
Query: 169 EAIRLFDG------SVSADGIC 184
A+R +G ++ D C
Sbjct: 72 SAMRNLNGYEIEGRTLRVDNAC 93
>gi|156346232|ref|XP_001621481.1| hypothetical protein NEMVEDRAFT_v1g76367 [Nematostella vectensis]
gi|156207460|gb|EDO29381.1| predicted protein [Nematostella vectensis]
Length = 88
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+ Y+GNL YS+ +L + F V I+ DR T R RGFGFVT GS EE ++AI
Sbjct: 8 KCYIGNLSYSVDEQALEDKF-HGYNVVDVNIITDRETGRPRGFGFVTFGSKEEMEKAIDE 66
Query: 174 FDGSVSADGICIAIVLIEP 192
FDG DG + + +P
Sbjct: 67 FDGQ-DLDGRPMKVNKAQP 84
>gi|148699638|gb|EDL31585.1| cold inducible RNA binding protein, isoform CRA_a [Mus musculus]
gi|149034578|gb|EDL89315.1| cold inducible RNA binding protein, isoform CRA_b [Rattus
norvegicus]
gi|149034579|gb|EDL89316.1| cold inducible RNA binding protein, isoform CRA_b [Rattus
norvegicus]
Length = 168
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + +L +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|395327650|gb|EJF60048.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 333
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
A +L++G LP S+TS S+ E F + G V A ++ DR T RS+GFGFV S E
Sbjct: 80 RATKLFIGGLPGSVTSESMREYFTQFGKVVDATVMLDRETGRSKGFGFV---SFENVNVE 136
Query: 171 IRLFDGSVSADGICIAIVLIEP 192
L G++ DG I + L +P
Sbjct: 137 PMLGFGNLQIDGKLIDVKLAQP 158
>gi|375144998|ref|YP_005007439.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361059044|gb|AEV98035.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 82
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL +S+ + L + F+E G V S ++ D+VT+RSRGF F+ M + A++AIR
Sbjct: 3 IYVSNLSFSVQNDDLRKHFSEYGEVDSVNVIIDKVTNRSRGFAFIEMKDNQAAEKAIREL 62
Query: 175 DG 176
+G
Sbjct: 63 NG 64
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT 150
+E E EEEE + ++ +L+V NLP+S + + ++F + GTV+ EI+ +
Sbjct: 74 QEVTMEITPEEEE--IQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQK-N 130
Query: 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
RSRGF FVTM + EEA+ AI F+ S+ G I +
Sbjct: 131 GRSRGFAFVTMTTGEEAQAAIDKFN-SLEVSGRIIRV 166
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+ A + +LY+ NL + + S L E F+ S+ +V+D RS G+GFV+ + E
Sbjct: 187 IPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATRE 246
Query: 166 EAKEAIRLFDG 176
EA AI F G
Sbjct: 247 EAVAAISAFSG 257
>gi|117620589|ref|YP_854603.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561996|gb|ABK38944.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 163
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
+A+S E LYVGNLPY ++ E+FAE G V S ++ D+ T + RGFGFV M
Sbjct: 65 LASSQETCTLYVGNLPYRANEIAVRELFAEQGQVISVRLMKDKATGKRRGFGFVEM 120
>gi|399931805|gb|AFP57452.1| RNA-binding glycine-rich protein [Nicotiana repanda]
Length = 144
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL + FA G V A ++ DR + RSRGFGFV E A EAI+
Sbjct: 39 KLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESANEAIKA 98
Query: 174 FDG 176
DG
Sbjct: 99 MDG 101
>gi|393784278|ref|ZP_10372444.1| hypothetical protein HMPREF1071_03312 [Bacteroides salyersiae
CL02T12C01]
gi|392666318|gb|EIY59833.1| hypothetical protein HMPREF1071_03312 [Bacteroides salyersiae
CL02T12C01]
Length = 115
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ L Y+++ S L E+FAE G VASA ++ DR T RS+G+GFV M E +AI
Sbjct: 3 IFIAGLSYNISDSDLTELFAEYGEVASARVISDRETGRSKGYGFVEMADEEAGDKAIAAL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+ DG +A+ + P
Sbjct: 63 N-EAEVDGRKLAVSVARP 79
>gi|255563618|ref|XP_002522811.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223538049|gb|EEF39662.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 134
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G L Y SL + F+ G V +A ++ DR T RSRGFGFV SV+ A A+
Sbjct: 35 SSKLFIGGLSYGTNDDSLKDAFSGFGDVVTARVITDRDTGRSRGFGFVDFSSVDSASSAL 94
Query: 172 RLFDG 176
DG
Sbjct: 95 SAMDG 99
>gi|102269210|gb|ABF55966.2| cleavage stimulation factor 64-kDa subunit [Bombyx mori]
Length = 326
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 95 EEAVEEEEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
+++ E+EE+ + D++ R ++VGN+PY T L ++F+E G V S ++V+DR T +
Sbjct: 2 DKSKEKEEQ---SIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 58
Query: 154 RGFGFVTMGSVEEAKEAIRLFDG------SVSADGIC 184
+G+GF E A A+R +G S+ D C
Sbjct: 59 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNAC 95
>gi|392409536|ref|YP_006446143.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390622672|gb|AFM23879.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 103
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL ++ L E+F + G+V SA+I+ D+ T RSRGFGFV M + E+ AI
Sbjct: 5 IYVGNLSFNANEGELRELFEQFGSVDSAKIITDQFTGRSRGFGFVEMSNREDGLRAIENL 64
Query: 175 D 175
D
Sbjct: 65 D 65
>gi|170078237|ref|YP_001734875.1| RNA-binding protein [Synechococcus sp. PCC 7002]
gi|169885906|gb|ACA99619.1| RNA-binding protein [Synechococcus sp. PCC 7002]
Length = 95
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+GNL Y +T L E FAE G V ++ DR T R RGF FV M S +E AI
Sbjct: 3 IYIGNLSYQVTDEDLKETFAEYGKVNRVQVPTDRETGRPRGFAFVEMSSEDEENAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|83643344|ref|YP_431779.1| RNA-binding protein [Hahella chejuensis KCTC 2396]
gi|83631387|gb|ABC27354.1| RNA-binding protein (RRM domain) [Hahella chejuensis KCTC 2396]
Length = 92
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L E FA G +++ I+ DR T +S+GFGFV M +A+EAI+
Sbjct: 3 IYVGNLSYQVTEDDLREAFAAYGDISNVNIIRDRDTGQSKGFGFVEMSDNGQAEEAIQKL 62
Query: 175 DGS 177
+ S
Sbjct: 63 NES 65
>gi|224091949|ref|XP_002309412.1| predicted protein [Populus trichocarpa]
gi|222855388|gb|EEE92935.1| predicted protein [Populus trichocarpa]
Length = 139
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L T + L+E F++ G V A+IV DR DRS+GFGFVT S +EA++A+
Sbjct: 40 KLFVGGLSIYTTENGLSEAFSQYGQVVEAKIVMDRALDRSKGFGFVTYASEDEAQKALDE 99
Query: 174 FDG 176
+G
Sbjct: 100 MNG 102
>gi|212274941|ref|NP_001130982.1| hypothetical protein [Zea mays]
gi|194690622|gb|ACF79395.1| unknown [Zea mays]
gi|413951564|gb|AFW84213.1| hypothetical protein ZEAMMB73_909652 [Zea mays]
Length = 142
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ +E P A +RL+V L +S+ SL + F+ GTV I+YD+ + RSRGFG
Sbjct: 33 LPDELPPGAPAPTSDSRLFVAGLSWSVDERSLTDAFSSFGTVTEVRIMYDKNSGRSRGFG 92
Query: 158 FVTMGSVEEAKEAIRLFDGSV 178
FV + EAK A DG V
Sbjct: 93 FVHFSNDNEAKCAKDAMDGKV 113
>gi|399931811|gb|AFP57455.1| RNA-binding glycine-rich protein [Nicotiana undulata]
Length = 144
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL + FA G V A ++ DR + RSRGFGFV E A EAI+
Sbjct: 39 KLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDESANEAIKA 98
Query: 174 FDG 176
DG
Sbjct: 99 MDG 101
>gi|330847369|gb|AEC46650.1| cold inducible RNA binding protein transcript variant 2 [Sus
scrofa]
Length = 182
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + SL +VF++ G ++ +V DR T RSR FGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV 164
K SD+ + L+VGNL +++ + LAE F GTV SA ++ DR + RS+GFG+V +
Sbjct: 231 KTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATP 290
Query: 165 EEAKEA 170
EEA++A
Sbjct: 291 EEAEKA 296
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L+VGNLP+ S+ F+E V S + ++ + R +GFG+VT SVE+AK
Sbjct: 338 SPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAK 397
Query: 169 EAIRLFDG 176
A +G
Sbjct: 398 SAFEQLNG 405
>gi|56750756|ref|YP_171457.1| RRM type RNA-binding protein [Synechococcus elongatus PCC 6301]
gi|56685715|dbj|BAD78937.1| RRM type RNA-binding protein [Synechococcus elongatus PCC 6301]
Length = 142
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+Y+GNLP + + L VFAEAG V SA++V DR T +SRGF F T+ S E A I
Sbjct: 4 RVYIGNLPRVIEQAELDAVFAEAGEV-SAKLVTDRKTGKSRGFAFATVASDELADALIER 62
Query: 174 FDGS 177
F+G+
Sbjct: 63 FNGT 66
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 96 EAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRG 155
E EEEE + ++ +L+V NLP+S + + ++F + GTV+ EI+ + RSRG
Sbjct: 79 EITPEEEE--IQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQK-NGRSRG 135
Query: 156 FGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187
F FVTM + EEA+ AI F+ S+ G I +
Sbjct: 136 FAFVTMTTGEEAQAAIDKFN-SLEVSGRIIRV 166
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+ A + +LY+ NL + + S L E F+ S+ +V+D RS G+GFV+ + E
Sbjct: 187 IPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATRE 246
Query: 166 EAKEAIRLFDG 176
EA AI F G
Sbjct: 247 EAVAAISAFSG 257
>gi|356572088|ref|XP_003554202.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Glycine max]
Length = 336
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 101 EEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
EE +A++D A R L+V L ++ TS +L F E G + +++D+VT +SRG+GF+
Sbjct: 53 EEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIFDKVTGKSRGYGFI 112
Query: 160 TMGSVEEAKEAIR----LFDGSVS 179
T ++E ++A+R L DG ++
Sbjct: 113 TFKNMESTQQALRAPSKLIDGRLA 136
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+LY+G+L +TS L FA G + + YDR T+ SRGFGFVT + E AK+AI
Sbjct: 158 KLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAI 215
>gi|312371125|gb|EFR19385.1| hypothetical protein AND_22609 [Anopheles darlingi]
Length = 377
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+PY T +L E+F E G V S ++VYDR T + +G+GF E A A+R
Sbjct: 18 VFVGNIPYDATEEALKEIFCEVGLVMSMKLVYDRETGKPKGYGFCEYKDKETALSAMRNL 77
Query: 175 DGSV 178
+G V
Sbjct: 78 NGYV 81
>gi|255949670|ref|XP_002565602.1| Pc22g16890 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592619|emb|CAP98977.1| Pc22g16890 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 724
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 11/99 (11%)
Query: 90 EEEEEEEAVEEEEEPKV-------AASDEAAR----LYVGNLPYSMTSSSLAEVFAEAGT 138
+E ++ + + E P++ AA AA+ L+V +LP S T+ SLAE F+++
Sbjct: 2 DESHKKRRLSDTESPEIKVETTTPAAEASAAQNKRTLFVRSLPTSATTESLAEYFSQSYI 61
Query: 139 VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
+ A +V D+ T S+GFGFVT VE+A+ A++ +GS
Sbjct: 62 IKHAVVVCDKETKASKGFGFVTFADVEDAESALKELNGS 100
Score = 36.6 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
A +++ NLP++ T L + F G + A +V D T+R RG GFV ++A
Sbjct: 303 ATTIFIRNLPFTATDQVLYDHFKTHFGPLRYARVVLDYETERPRGTGFVCFWKPDDANTC 362
Query: 171 IR 172
IR
Sbjct: 363 IR 364
>gi|434398120|ref|YP_007132124.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
gi|428269217|gb|AFZ35158.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
Length = 96
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T + L +VFAE G+V + DR T R RGF FV MG+ E +AI
Sbjct: 3 IYVGNLDYGVTQADLTDVFAEYGSVKRVHLPTDRDTGRVRGFAFVEMGTEAEEDKAIDAL 62
Query: 175 DGSVSAD 181
+G+ D
Sbjct: 63 NGAEWMD 69
>gi|333030558|ref|ZP_08458619.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
gi|332741155|gb|EGJ71637.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
Length = 104
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++G+L +++ LAE+F G V SA ++ D+ T+RS+GFGFV M E A +AI
Sbjct: 3 IFIGSLSFNVNDEGLAEIFEPYGAVTSARVIKDKFTNRSKGFGFVEMEDDEAATKAINEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G+ DG IA+ P
Sbjct: 63 NGA-EVDGRPIAVSEARP 79
>gi|344243389|gb|EGV99492.1| Cold-inducible RNA-binding protein [Cricetulus griseus]
Length = 184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + +L +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|350631988|gb|EHA20356.1| hypothetical protein ASPNIDRAFT_44327 [Aspergillus niger ATCC 1015]
Length = 722
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
PE+ E + ++ A +E P AS++ R L++ +LP S T+ SL E F+++ + A
Sbjct: 15 PESNMEVQTDKPA---QETP---ASNQPRRELFIRSLPASTTTESLTEYFSQSYVIKHAV 68
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
V D T +S+G+GFVT +E+AK A+ F+GSV
Sbjct: 69 AVTDPETKQSKGYGFVTFADIEDAKAALEEFNGSV 103
Score = 39.7 bits (91), Expect = 0.85, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A+ +++ NLP++ L E F + G + A IV D T+R RG GF ++A +
Sbjct: 308 ASTIFIRNLPFTCDDDMLYEHFTQFGPLRYARIVVDHETERPRGTGFACFWKPDDAAACV 367
Query: 172 R 172
R
Sbjct: 368 R 368
>gi|145256511|ref|XP_001401421.1| ribosome biogenesis (Nop4) [Aspergillus niger CBS 513.88]
gi|134058324|emb|CAK38513.1| unnamed protein product [Aspergillus niger]
Length = 722
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
PE+ E + ++ A +E P AS++ R L++ +LP S T+ SL E F+++ + A
Sbjct: 15 PESNMEVQTDKPA---QETP---ASNQPRRELFIRSLPASTTTESLTEYFSQSYVIKHAV 68
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
V D T +S+G+GFVT +E+AK A+ F+GSV
Sbjct: 69 AVTDPETKQSKGYGFVTFADIEDAKAALEEFNGSV 103
Score = 39.7 bits (91), Expect = 0.85, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A+ +++ NLP++ L E F + G + A IV D T+R RG GF ++A +
Sbjct: 308 ASTIFIRNLPFTCDDDMLYEHFTQFGPLRYARIVVDHETERPRGTGFACFWKPDDAAACV 367
Query: 172 R 172
R
Sbjct: 368 R 368
>gi|225560420|gb|EEH08701.1| RNA recognition domain-containing protein-containing protein
[Ajellomyces capsulatus G186AR]
Length = 740
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V +LP S T+ SL E F+++ + A +V D T +S+G+GFVT E+A +A+ F
Sbjct: 49 LFVRSLPASATTESLTEYFSQSYPLKHATVVLDPQTKQSKGYGFVTFADHEDAAKALEEF 108
Query: 175 DGSVSADGICIAIVLIEPFNCQHFGNGRCLVFLSYI 210
+GS DG + I + EP + + NG V +S++
Sbjct: 109 NGS-DFDGRKLKIEVAEPRHREIDENGGKSVSISHL 143
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147
E +EE+ + ++EE E + AS +++ NLP++ T SL E F + G + A +V D
Sbjct: 300 EGDEEDAGKKIDEEVEDERNAST----VFIRNLPFNATDDSLYEHFVQFGPLRYARVVVD 355
Query: 148 RVTDRSRGFGFVTMGSVEEAKEAIR 172
TDR RG FV E+A +R
Sbjct: 356 AETDRPRGTAFVCFWKNEDAISCLR 380
>gi|428203095|ref|YP_007081684.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
gi|427980527|gb|AFY78127.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
Length = 99
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L VF E GTV ++ DR T R RGF FV MG+ E AI
Sbjct: 3 IYVGNLSYEVTQEDLERVFKEYGTVNRVQMPTDRETGRPRGFAFVEMGTEAEETTAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|17228236|ref|NP_484784.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75910838|ref|YP_325134.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|81818536|sp|Q44560.3|RBPA_NOSS1 RecName: Full=Putative RNA-binding protein RbpA
gi|532033|dbj|BAA04563.1| RNA-binding protein [Anabaena variabilis]
gi|17130086|dbj|BAB72698.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75704563|gb|ABA24239.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 102
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T +L+ VFAE GTV ++ DR T + RGFGFV MGS E AI
Sbjct: 3 IYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|291233573|ref|XP_002736726.1| PREDICTED: RNA-binding protein 38-like [Saccoglossus kowalevskii]
Length = 219
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR- 172
+L+VG LPYS T SL E F G + A ++ DR T +SRG+GFVTM A+ A +
Sbjct: 15 KLFVGGLPYSTTDKSLREYFDNFGEIEEAVVITDRQTGKSRGYGFVTMADRPAAERACKD 74
Query: 173 ---LFDGSVSADGICIAIVLIEPFNCQH 197
+ DG + + +A + +P H
Sbjct: 75 PNPIIDGRKA--NVNLAFIGAKPRGVPH 100
>gi|149034582|gb|EDL89319.1| cold inducible RNA binding protein, isoform CRA_d [Rattus
norvegicus]
gi|149034583|gb|EDL89320.1| cold inducible RNA binding protein, isoform CRA_d [Rattus
norvegicus]
Length = 176
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L+VG L + +L +VF++ G ++ +V DR T RSRGFGFVT ++++A
Sbjct: 2 ASDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+ +G S DG I +
Sbjct: 61 KDAMMAMNGK-SVDGRQIRV 79
>gi|126660986|ref|ZP_01732073.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
gi|126617726|gb|EAZ88508.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
Length = 81
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T + L VF++ G+V I DR T R RGF FV M + EE +AI
Sbjct: 3 IYVGNLAYEVTDADLNTVFSDYGSVKRVHIPTDRETGRPRGFAFVEMNTEEEESKAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|323331635|gb|EGA73049.1| Hrp1p [Saccharomyces cerevisiae AWRI796]
Length = 521
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 133 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 192
Query: 160 TM---GSVEEAKEAIRLFDGSV 178
+ SV+E + + DG V
Sbjct: 193 SFEKPSSVDEVVKTQHILDGKV 214
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 103 EPKVA----ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+PK A D+ +++VG + + E F++ GT+ A+++ D+ T +SRGFGF
Sbjct: 216 DPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGF 275
Query: 159 VTMGSVE 165
VT S +
Sbjct: 276 VTYDSAD 282
>gi|209155104|gb|ACI33784.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|223648252|gb|ACN10884.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 167
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
SDE +L+VG L + SL +VF++ G ++ ++ DR T RSRGFGFVT + +EAK
Sbjct: 2 SDEG-KLFVGGLSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFENPDEAK 60
Query: 169 EAIRLFDGSVSADGICIAI 187
+A+ +G S DG I +
Sbjct: 61 DAMLAMNGK-SLDGRQIRV 78
>gi|307155022|ref|YP_003890406.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
gi|306985250|gb|ADN17131.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
Length = 109
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y + L EVFAE GTV + DR T + RGFGFV M + +E +AI
Sbjct: 3 IYVGNLHYEVEEGELREVFAEYGTVRRVYLPEDRETGKKRGFGFVEMSTDDEEDKAIETL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|443328242|ref|ZP_21056842.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC 7305]
gi|442792088|gb|ELS01575.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC 7305]
Length = 92
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y + L EVFAE GTV I DR T R RGF FV M S + +AI
Sbjct: 3 IYVGNLAYEINQEDLNEVFAEYGTVKRVHIPTDRETGRVRGFAFVEMESESDEDKAIAAL 62
Query: 175 DGSVSAD-GICIAIVLIEPFNCQHFGNGR 202
DG+ + + + N FG GR
Sbjct: 63 DGAEWMERSLKVNKARPRENNRNSFGGGR 91
>gi|3342756|gb|AAC41383.1| RNA-binding protein AxRNBP [Ambystoma mexicanum]
Length = 144
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+++SDE +L+VG L + SL F++ G V A +V DR T RSRGFGFVT +
Sbjct: 1 MSSSDEG-KLFVGGLSFDSNEHSLESAFSKYGDVCDAVVVKDRETGRSRGFGFVTFRNPS 59
Query: 166 EAKEAIRLFDGSVSADGICIAIVL 189
+AKEA+ +G S DG I + L
Sbjct: 60 DAKEALHAMNGE-SLDGRQIRVDL 82
>gi|392412614|ref|YP_006449221.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390625750|gb|AFM26957.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 95
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL + + + L +F+ G V SA+++ D+ T+RSRGFGF+ M + EE +AI+
Sbjct: 4 KIYVGNLSFDSSEADLKGLFSTYGEVESAKVIVDQFTNRSRGFGFIEMTNREEGLKAIQA 63
Query: 174 FD 175
D
Sbjct: 64 LD 65
>gi|327279530|ref|XP_003224509.1| PREDICTED: cold-inducible RNA-binding protein-like [Anolis
carolinensis]
Length = 148
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
ASDE +L++G L + +L ++F+ G +A +V DR T RSRGFGF+T E+A
Sbjct: 2 ASDEG-KLFIGGLSFDTNEQNLEQLFSPYGDIAEVVVVKDRETQRSRGFGFITYCRPEDA 60
Query: 168 KEAIRLFDGSVSADGICIAI 187
K+A+R +G S DG I +
Sbjct: 61 KDAMRAMNGE-SVDGRQIRV 79
>gi|374316448|ref|YP_005062876.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
gi|359352092|gb|AEV29866.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 92
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++YVGN+ Y+ + L ++F++ GTV SA I+ DR T R +GFGFV M A AI
Sbjct: 2 AKKIYVGNMSYNTSEEELRDLFSQYGTVLSASIIIDRETRRPKGFGFVEMEEDSAADAAI 61
Query: 172 RLFDG 176
DG
Sbjct: 62 SQLDG 66
>gi|313240807|emb|CBY33099.1| unnamed protein product [Oikopleura dioica]
Length = 252
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+++VG LPY T SL + F G + A ++ DR T +SRG+GFVTM E+A++AI+
Sbjct: 14 KIFVGGLPYHTTDDSLRQFFDVYGDIEEAVVITDRQTGKSRGYGFVTMAKKEDAQKAIQ 72
>gi|292490317|ref|YP_003525756.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
gi|291578912|gb|ADE13369.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
Length = 97
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L F G V+SA+++ D+ ++RS+GFGFV M E+A+ AI+
Sbjct: 3 IYVGNLSYQVTDEELRAAFENYGEVSSAKVIVDKFSNRSKGFGFVEMARQEDAETAIKEM 62
Query: 175 DGSVSADGICIAIVLIEPFN 194
+ S G I + P N
Sbjct: 63 NDS-DLKGRQIVVNQARPRN 81
>gi|255547195|ref|XP_002514655.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223546259|gb|EEF47761.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 267
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++++VG + Y +SL E F + G V A ++ DR T RSRGF FVT S EEA AI
Sbjct: 39 SSKVFVGGISYQTDDTSLREAFGKYGEVIEARVIIDRETGRSRGFAFVTYTSSEEASSAI 98
Query: 172 RLFDG 176
+ DG
Sbjct: 99 QALDG 103
>gi|427415565|ref|ZP_18905748.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425758278|gb|EKU99130.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 84
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L V A+ GTV S + DR T R RGFGFV+MG+ E + I
Sbjct: 3 IYVGNLSYEVTEEELTAVCAKYGTVKSVYLPTDRETGRLRGFGFVSMGAETEESDIIEAL 62
Query: 175 DGS 177
DGS
Sbjct: 63 DGS 65
>gi|374997451|ref|YP_004972950.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
orientis DSM 765]
gi|357215817|gb|AET70435.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
orientis DSM 765]
Length = 83
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
A LYVGNLP++ T+ L E F+ G V S+ I+ DR T RSRGFGF+ + + A+ A
Sbjct: 2 ATTLYVGNLPWNTTAEELGEFFSAYGQVESSRIITDRETGRSRGFGFIEVEDADAARMA 60
>gi|212276175|ref|NP_001130201.1| hypothetical protein [Zea mays]
gi|194688532|gb|ACF78350.1| unknown [Zea mays]
gi|414887483|tpg|DAA63497.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
gi|414887484|tpg|DAA63498.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
Length = 308
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L ++ ++L + F+E G V A I+ DR + RSRGFGF+T S EEA A+
Sbjct: 31 SSKLFVGGLSFATDETTLKDAFSEFGNVLEARIIIDRESGRSRGFGFITFTSTEEASAAM 90
Query: 172 RLFDG 176
DG
Sbjct: 91 TSMDG 95
>gi|209528246|ref|ZP_03276711.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376004999|ref|ZP_09782569.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|423065550|ref|ZP_17054340.1| RNP-1 like RNA-binding protein [Arthrospira platensis C1]
gi|209491318|gb|EDZ91708.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375326593|emb|CCE18322.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|406712993|gb|EKD08168.1| RNP-1 like RNA-binding protein [Arthrospira platensis C1]
Length = 100
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L VFAE G V ++ DR T R RGFGFV M + E + AI
Sbjct: 3 IYVGNLSYEVTEEDLTAVFAEYGAVKRVKLPTDRETGRMRGFGFVEMDTEAEEQSAIDAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|167761793|ref|ZP_02433920.1| hypothetical protein BACSTE_00134 [Bacteroides stercoris ATCC
43183]
gi|167700299|gb|EDS16878.1| hypothetical protein BACSTE_00134 [Bacteroides stercoris ATCC
43183]
Length = 99
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ L Y + ++ L +FAE G V+SA+++ DR T RSRGF FV M + E ++AI
Sbjct: 3 IYISGLSYGINNADLTNLFAEFGEVSSAKVILDRETGRSRGFAFVEMNNDTEGQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G V D I++ + P
Sbjct: 63 NG-VEYDSKVISVSVARP 79
>gi|16330189|ref|NP_440917.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|383321932|ref|YP_005382785.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325101|ref|YP_005385954.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490985|ref|YP_005408661.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436252|ref|YP_005650976.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|451814348|ref|YP_007450800.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|1652677|dbj|BAA17597.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|339273284|dbj|BAK49771.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|359271251|dbj|BAL28770.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274421|dbj|BAL31939.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277591|dbj|BAL35108.1| RNA-binding protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958098|dbj|BAM51338.1| RNA-binding protein [Synechocystis sp. PCC 6803]
gi|451780317|gb|AGF51286.1| RNA-binding protein [Synechocystis sp. PCC 6803]
Length = 83
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y T + VF+E GTV ++ DR T R RGFGFV M S +E AI
Sbjct: 3 IYVGNLSYQATEDDVLTVFSEYGTVKRVQLPTDRETGRMRGFGFVEMSSDKEEDAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|356541091|ref|XP_003539016.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 207
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165
+A+SD R +VG L ++ +L F++ G + +I+ DR T RSRGFGFVT S +
Sbjct: 37 MASSDVEYRCFVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQ 96
Query: 166 EAKEAIRLFDGSVSADGICIAI 187
K+AI +G + DG I +
Sbjct: 97 SMKDAIEGMNGQ-NLDGRNITV 117
>gi|328858559|gb|EGG07671.1| hypothetical protein MELLADRAFT_71659 [Melampsora larici-populina
98AG31]
Length = 163
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+L+VGNL +S ++SL + F + G V A ++ DR T RSRGFGF+T + ++A+ AI
Sbjct: 6 KLFVGNLAWSTDTNSLTQAFNQYGEVVDAIVMQDRETGRSRGFGFITFSNQDQAQAAI 63
>gi|326493798|dbj|BAJ85361.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R +VG L ++ +L F++ G + A+I+ DR T RSRGFGFVT GS E ++AI
Sbjct: 7 RCFVGGLAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEE 66
Query: 174 FDGSVSADGICIAI 187
+G DG I +
Sbjct: 67 MNGK-ELDGRSITV 79
>gi|223936242|ref|ZP_03628155.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223895104|gb|EEF61552.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 103
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYVGNL + T + + ++F+ G V ++ D++T R+RGFGFVTM + E A+ AI
Sbjct: 4 KLYVGNLSFKATENDIQDLFSAHGPVNEVNLIMDKMTGRARGFGFVTMATAEGAEAAIAD 63
Query: 174 FDGS 177
+G
Sbjct: 64 LNGK 67
>gi|259149364|emb|CAY86168.1| Hrp1p [Saccharomyces cerevisiae EC1118]
Length = 534
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSV 178
+ SV+E + + DG V
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKV 227
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 103 EPKVA----ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+PK A D+ +++VG + + E F++ GT+ A+++ D+ T +SRGFGF
Sbjct: 229 DPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGF 288
Query: 159 VTMGSVE 165
VT S +
Sbjct: 289 VTYDSAD 295
>gi|303326560|ref|ZP_07357003.1| RNA-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|345893773|ref|ZP_08844565.1| hypothetical protein HMPREF1022_03225 [Desulfovibrio sp.
6_1_46AFAA]
gi|302864476|gb|EFL87407.1| RNA-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|345045809|gb|EGW49708.1| hypothetical protein HMPREF1022_03225 [Desulfovibrio sp.
6_1_46AFAA]
Length = 88
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM--GSVEEAKEAIR 172
+YVGNLP+S + ++FAE G V S ++V DR T R+RGFGFV M G + A EA+
Sbjct: 5 IYVGNLPWSANEEQVQDLFAEYGNVLSVKLVSDRETGRARGFGFVEMEDGEADAAIEALD 64
Query: 173 LF 174
F
Sbjct: 65 NF 66
>gi|428306262|ref|YP_007143087.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428247797|gb|AFZ13577.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 111
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T +++ FAE GTV ++ DR T R RGF FV M + E ++AI
Sbjct: 3 IYVGNLSYQVTQEDISQTFAEYGTVKRVQLPTDRETGRMRGFAFVEMETDAEEEKAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|212704871|ref|ZP_03312999.1| hypothetical protein DESPIG_02938 [Desulfovibrio piger ATCC 29098]
gi|212671713|gb|EEB32196.1| hypothetical protein DESPIG_02938 [Desulfovibrio piger ATCC 29098]
Length = 88
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM--GSVEEAKEAI 171
+YVGNLP++ T + ++FAE G V S ++V DR T R+RGFGFV M G + A EA+
Sbjct: 5 IYVGNLPWAATEEQVQDLFAEYGKVLSVKLVSDRETGRARGFGFVEMEDGEAQAAIEAL 63
>gi|354566345|ref|ZP_08985517.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353545361|gb|EHC14812.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 98
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T SL VFAE GTV ++ DR T R RGFGFV MG+ E AI
Sbjct: 3 IYVGNLSYDVTEDSLNAVFAEYGTVKRVQLPTDRETGRLRGFGFVEMGTEAEESAAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|323307358|gb|EGA60637.1| Hrp1p [Saccharomyces cerevisiae FostersO]
Length = 534
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSV 178
+ SV+E + + DG V
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKV 227
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 103 EPKVA----ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+PK A D+ +++VG + + E F++ GT+ A+++ D+ T +SRGFGF
Sbjct: 229 DPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGF 288
Query: 159 VTMGSVE 165
VT S +
Sbjct: 289 VTYDSAD 295
>gi|323303112|gb|EGA56914.1| Hrp1p [Saccharomyces cerevisiae FostersB]
Length = 550
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSV 178
+ SV+E + + DG V
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKV 227
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 103 EPKVA----ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+PK A D+ +++VG + + E F++ GT+ A+++ D+ T +SRGFGF
Sbjct: 229 DPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGF 288
Query: 159 VTMGSVE 165
VT S +
Sbjct: 289 VTYDSAD 295
>gi|83032218|gb|ABB97027.1| unknown [Brassica rapa]
Length = 208
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++++VG + YS L E F++ G V A+I+ DR T RSRGF FVT S EEA A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 172 RLFDG 176
+L DG
Sbjct: 93 QL-DG 96
>gi|380696527|ref|ZP_09861386.1| RNA-binding protein rbpA [Bacteroides faecis MAJ27]
Length = 100
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ L Y + L +FAE G V+SA++++DR T RSRGF FV M + E ++AI
Sbjct: 3 IYISGLSYGTNDADLTNLFAEFGEVSSAKVIFDRETGRSRGFAFVEMANDAEGQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G V D I++ + P
Sbjct: 63 NG-VEYDQKVISVSVARP 79
>gi|365763141|gb|EHN04671.1| Hrp1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 534
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSV 178
+ SV+E + + DG V
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKV 227
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 103 EPKVA----ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+PK A D+ +++VG + + E F++ GT+ A+++ D+ T +SRGFGF
Sbjct: 229 DPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGF 288
Query: 159 VTMGSVE 165
VT S +
Sbjct: 289 VTYDSAD 295
>gi|226499338|ref|NP_001149519.1| glycine-rich RNA-binding protein 8 [Zea mays]
gi|195627730|gb|ACG35695.1| glycine-rich RNA-binding protein 8 [Zea mays]
Length = 198
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R ++GNL +S T SL + F++ G + A++V D+ + RSRGFGFVT + ++AI
Sbjct: 8 RCFIGNLSWSTTDESLKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQAMEDAIEG 67
Query: 174 FDGSVSADGICIAIVLIEP 192
+G + DG I + +P
Sbjct: 68 MNG-LDLDGRNITVDKAQP 85
>gi|117619969|ref|YP_856326.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561376|gb|ABK38324.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 95
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ ++YVGNL Y MT+ L VF++ G V +I+ DR T +S+GFGF+ M EA++A
Sbjct: 2 DGMKIYVGNLSYRMTADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKA 61
Query: 171 IRLFDGS 177
I G+
Sbjct: 62 IAGLHGT 68
>gi|221065729|ref|ZP_03541834.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220710752|gb|EED66120.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 83
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ LYV NL Y + +L F+ G V S+E++ DR T +SRGFGFV MG+ +AK AI
Sbjct: 3 SNLYVSNLGYGVDRETLKSHFSSCGDVLSSEVITDRNTGQSRGFGFVEMGTAAQAKTAI 61
>gi|6324449|ref|NP_014518.1| Hrp1p [Saccharomyces cerevisiae S288c]
gi|2500574|sp|Q99383.1|HRP1_YEAST RecName: Full=Nuclear polyadenylated RNA-binding protein 4;
AltName: Full=Cleavage factor IB; Short=CFIB
gi|1016290|gb|AAA79097.1| nuclear polyadenylated RNA-binding protein [Saccharomyces
cerevisiae]
gi|1420003|emb|CAA99142.1| HRP1 [Saccharomyces cerevisiae]
gi|1550721|emb|CAA64546.1| RNA binding protein [Saccharomyces cerevisiae]
gi|1657691|gb|AAB18142.1| Hrp1p [Saccharomyces cerevisiae]
gi|285814768|tpg|DAA10661.1| TPA: Hrp1p [Saccharomyces cerevisiae S288c]
gi|349581049|dbj|GAA26207.1| K7_Hrp1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296592|gb|EIW07694.1| Hrp1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 534
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSV 178
+ SV+E + + DG V
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKV 227
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 103 EPKVA----ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+PK A D+ +++VG + + E F++ GT+ A+++ D+ T +SRGFGF
Sbjct: 229 DPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGF 288
Query: 159 VTMGSVE 165
VT S +
Sbjct: 289 VTYDSAD 295
>gi|219670337|ref|YP_002460772.1| RNP-1 like RNA-binding protein [Desulfitobacterium hafniense DCB-2]
gi|219540597|gb|ACL22336.1| RNP-1 like RNA-binding protein [Desulfitobacterium hafniense DCB-2]
Length = 83
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVGNLP++ TS L F + G V S+ I+ DR T RSRGFGFV + E ++A R
Sbjct: 2 ATLYVGNLPWNTTSEDLNSFFGQYGQVISSRIITDRETGRSRGFGFVEV----EDEDAAR 57
Query: 173 L 173
+
Sbjct: 58 M 58
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
Query: 78 TEDSQDEPETE--QEEEEEEEAVEEEEEPKVAASDEAA----RLYVGNLPYSMTSSSLAE 131
TE S +PET Q + + + E+ K A +D+A+ L+VG L +++ L +
Sbjct: 360 TEMSDPKPETPVAQNGKNKRKGDTEDGSAKKAKTDDASGDIKNLFVGGLSWNVDDDWLKK 419
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191
F + G V SA ++ +R T+RS+GFG+V S E+A++A+ G+ DG I +
Sbjct: 420 EFEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAVEAMAGT-EIDGRTINVDFSA 478
Query: 192 P 192
P
Sbjct: 479 P 479
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI 144
P+ E+ +E+ +EE S L++GNLP+S T S+ E F+E G + S +
Sbjct: 479 PKPERPPQEKRSFGQEE------LSAPTTTLFIGNLPFSATQDSVYEAFSEYGDINSVRL 532
Query: 145 VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185
D T+R +GFG+V + E A A+ + G DGI I
Sbjct: 533 PTDPETERIKGFGYVEFATQEAATAAVNVGRG----DGIYI 569
>gi|375148329|ref|YP_005010770.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361062375|gb|AEW01367.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 122
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI-RL 173
+YVGNL + MT L +F + G+V SA+IV D+ + RS+GFGFV M EA+ A+ L
Sbjct: 3 IYVGNLSWQMTDEDLRTLFEQYGSVTSAKIVKDKTSGRSKGFGFVEMPEDGEAQNALTSL 62
Query: 174 FDGSVSADGICI 185
++ V I +
Sbjct: 63 YESEVLGRKIIV 74
>gi|151945512|gb|EDN63753.1| cleavage and polyadenylation factor CF I component involved in
pre-mRNA 3'-end processing [Saccharomyces cerevisiae
YJM789]
gi|190407229|gb|EDV10496.1| nuclear polyadenylated RNA-binding protein 4 [Saccharomyces
cerevisiae RM11-1a]
gi|207341455|gb|EDZ69508.1| YOL123Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270127|gb|EEU05357.1| Hrp1p [Saccharomyces cerevisiae JAY291]
Length = 534
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSV 178
+ SV+E + + DG V
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKV 227
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 103 EPKVA----ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
+PK A D+ +++VG + + E F++ GT+ A+++ D+ T +SRGFGF
Sbjct: 229 DPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGF 288
Query: 159 VTMGSVE 165
VT S +
Sbjct: 289 VTYDSAD 295
>gi|169772913|ref|XP_001820925.1| glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40]
gi|238490830|ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
gi|83768786|dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697065|gb|EED53406.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
Length = 125
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A++YVGNL ++ SL + F+E G V A ++ DR T RSRGFGFVT + EA AI
Sbjct: 3 SAKVYVGNLSWNTNDESLRQTFSEFGNVLDAIVMKDRETGRSRGFGFVTFSAQTEADAAI 62
>gi|226491121|ref|NP_001143351.1| uncharacterized protein LOC100275970 [Zea mays]
gi|195618716|gb|ACG31188.1| hypothetical protein [Zea mays]
Length = 295
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L ++ ++L + F+E G V A I+ DR + RSRGFGF+T S EEA A+
Sbjct: 31 SSKLFVGGLSFATDETTLKDAFSEFGNVLEARIIIDRESGRSRGFGFITFTSTEEASAAM 90
Query: 172 RLFDG 176
DG
Sbjct: 91 TSMDG 95
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
+E E E E+ +EP ++ +L+V NLP+S++ + +F E GTV EI+ +
Sbjct: 71 QEIEVEAKPEQTQEP-----NQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQK- 124
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFD 175
RSRG+ FVTM S EEA+ + FD
Sbjct: 125 DGRSRGYAFVTMDSGEEAQAVVEKFD 150
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LYV NL + + S+ L E F+ S +V+D + RS G+GF + + EEA+ AI
Sbjct: 189 KLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISA 248
Query: 174 FDG 176
DG
Sbjct: 249 LDG 251
>gi|83589429|ref|YP_429438.1| RNA-binding region RNP-1 [Moorella thermoacetica ATCC 39073]
gi|83572343|gb|ABC18895.1| RNA-binding region RNP-1 [Moorella thermoacetica ATCC 39073]
Length = 81
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 31/45 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
LYVGNLP++ + LA FA G V SA I+ DR T RSRGFGFV
Sbjct: 4 LYVGNLPWATSEEELARAFASHGEVLSARIITDRQTGRSRGFGFV 48
>gi|452824419|gb|EME31422.1| glycine-rich RNA binding protein isoform 1 [Galdieria sulphuraria]
Length = 148
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R++VG LP+S++ L +VF++ G V A +V DR T RSRGFGF++ E
Sbjct: 3 EDNRVFVGGLPWSISEEDLKQVFSKYGEVVDARVVIDRETGRSRGFGFISYAESSSVDEC 62
Query: 171 IRLFDG 176
I DG
Sbjct: 63 IAALDG 68
>gi|411118097|ref|ZP_11390478.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410711821|gb|EKQ69327.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 100
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y++TS L + FAE GTV ++ DR T R RGF FV M + E +AI
Sbjct: 3 IYVGNLSYNVTSDDLTQTFAEYGTVKRVQLPTDRETGRLRGFAFVEMETDAEEDKAIEAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|431794924|ref|YP_007221829.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785150|gb|AGA70433.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 83
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 32/47 (68%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
A LYVGNLP++ TS L F + G V S+ I+ DR T RSRGFGFV
Sbjct: 2 ATLYVGNLPWNTTSEDLNSFFGQYGQVISSRIITDRETGRSRGFGFV 48
>gi|374315284|ref|YP_005061712.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350928|gb|AEV28702.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 92
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++YV N+ Y+ + L ++FA+ GTV SA I+ DR T R +GFGFV M A+ AI
Sbjct: 2 AKKIYVRNMSYNTSEEELRDLFAQYGTVLSANIIIDRETRRPKGFGFVEMEEDSAAEAAI 61
Query: 172 RLFDGSVSADGICIAI 187
DG DG +++
Sbjct: 62 SQLDGK-DLDGRNLSV 76
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 66 RQFSASFDGFQVTEDSQ-DEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSM 124
++++ + DG ++T+ + + E E E A E E+ + + LYV NL S+
Sbjct: 279 KEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGVNLYVKNLDDSV 338
Query: 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSAD 181
T L + FA GT+ SA ++ D RSRGFGFV + EE+ A+ +G + A+
Sbjct: 339 TDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIAN 395
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L + S L E+F+ G VAS + D VT RS G+ +V + +A+ A+
Sbjct: 41 LYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAERAMDTM 100
Query: 175 DGSVSADGIC 184
+ S+ C
Sbjct: 101 NFSMIKGKPC 110
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D Y+ N+PY + L + FA+ G V SA + + T+++ GFGF+ E A
Sbjct: 213 DSWTNCYIKNVPYEWDDARLNQEFAQFGEVLSATVSRED-TNQTLGFGFINFAEHESAVA 271
Query: 170 AIRLFDG 176
A+ +G
Sbjct: 272 AVEALNG 278
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL ++ + L + F+ G + S ++V DR S G+G+V + E A AI
Sbjct: 129 IFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKL 188
Query: 175 DG 176
DG
Sbjct: 189 DG 190
>gi|121705054|ref|XP_001270790.1| ribonucleoprotein, chloroplast [Aspergillus clavatus NRRL 1]
gi|119398936|gb|EAW09364.1| ribonucleoprotein, chloroplast [Aspergillus clavatus NRRL 1]
Length = 514
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
+S E+ L+VGNLP+S S+ E+F E G++ + D + R +GFG+V SV+EA
Sbjct: 364 SSPESDTLFVGNLPFSANEDSVQELFGEKGSIVGIRLPTDPDSGRPKGFGYVQFASVDEA 423
Query: 168 KEAIRLFDGSVSADGICIAIVLIEP 192
+EA +G+ DG + + P
Sbjct: 424 REAFNSLNGA-ELDGRPVRLDFSTP 447
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI 144
P +++ EEE + ++ + + +A L++GNL +++ L + F G ++ I
Sbjct: 232 PSKKRKAEEESASTPKKSKQAEEETGASANLFIGNLSWNVDEDWLRQEFETFGELSGVRI 291
Query: 145 VYDRVTDRSRGFGFV 159
V DR + RSRGFG+V
Sbjct: 292 VTDRDSGRSRGFGYV 306
>gi|90265701|dbj|BAE91897.1| glycine-rich RNA-binding protein [Lolium perenne]
Length = 107
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E R +VG L ++ SL + F++ G + +I+ DR T RSRGFGFVT S E K A
Sbjct: 3 EEYRCFVGGLAWATNDQSLEQAFSQFGEITDCKIINDRETGRSRGFGFVTFSSSESMKNA 62
Query: 171 IRLFDGSVSADGICIAI 187
I +G DG I +
Sbjct: 63 IEGMNGQ-DLDGRNITV 78
>gi|358365933|dbj|GAA82554.1| ribosome biogenesis [Aspergillus kawachii IFO 4308]
Length = 721
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAE 143
P+T + + E+ A +E P AS++ R L+V +LP S T+ SL E F+++ + A
Sbjct: 15 PDTNMDIQTEKPA---QETP---ASNQPRRELFVRSLPASTTTESLTEYFSQSYVIKHAV 68
Query: 144 IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178
V D T +S+G+GFVT +E+AK A+ F+GSV
Sbjct: 69 AVTDPETKQSKGYGFVTFADLEDAKAALEEFNGSV 103
Score = 39.7 bits (91), Expect = 0.80, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A+ +++ NLP++ L E F + G + A IV D T+R RG GF ++A +
Sbjct: 307 ASTIFIRNLPFTCDDDMLYEHFTQFGPLRYARIVVDHETERPRGTGFACFWKPDDAAACV 366
Query: 172 R 172
R
Sbjct: 367 R 367
>gi|393763707|ref|ZP_10352323.1| hypothetical protein AGRI_11977 [Alishewanella agri BL06]
gi|392605375|gb|EIW88270.1| hypothetical protein AGRI_11977 [Alishewanella agri BL06]
Length = 165
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ +E P S E A LYVGNLPY ++ +F+ GTV + ++ DR T R RGFG
Sbjct: 63 ISTQEIPNNDFSGETATLYVGNLPYRANEDAVKALFSRYGTVVNVRLMKDRQTGRRRGFG 122
Query: 158 FVTMGSVEEAKEAIRLFD 175
FV + + + + +L D
Sbjct: 123 FVEVAAADANQMITKLND 140
>gi|126654754|ref|ZP_01726288.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
gi|126623489|gb|EAZ94193.1| RNA-binding region RNP-1 [Cyanothece sp. CCY0110]
Length = 97
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNL Y +T L+EVF + G V I DR T R RGF FV M S ++ ++AI
Sbjct: 3 IYVGNLSYDVTKEDLSEVFTDYGQVKRVHIPTDRDTGRMRGFAFVEMTSDDQEEKAISTL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
>gi|374812572|ref|ZP_09716309.1| RNA-binding protein [Treponema primitia ZAS-1]
Length = 90
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +LYVGNL Y+ +L +F+ GTV S +I+ DR T S+GFGFV M + EA+ AI
Sbjct: 2 AKKLYVGNLSYNTHEDNLRSLFSAFGTVESVKIITDRDTGNSKGFGFVEMSTDAEAQAAI 61
Query: 172 RLFDGSVSADGICIAI 187
+ S DG I +
Sbjct: 62 SGTN-STDLDGRAIKV 76
>gi|386816934|ref|ZP_10104152.1| RNP-1 like RNA-binding protein [Thiothrix nivea DSM 5205]
gi|386421510|gb|EIJ35345.1| RNP-1 like RNA-binding protein [Thiothrix nivea DSM 5205]
Length = 127
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+YVGNLPY +T + L ++F G V+S ++ D++T +S+GFGFV M + EA AI
Sbjct: 3 IYVGNLPYKITENELRDLFGAYGEVSSVSMIKDKMTGQSKGFGFVDMPNAGEATAAI 59
>gi|329956785|ref|ZP_08297354.1| hypothetical protein HMPREF9445_02226 [Bacteroides clarus YIT
12056]
gi|328523824|gb|EGF50911.1| hypothetical protein HMPREF9445_02226 [Bacteroides clarus YIT
12056]
Length = 99
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ L Y + ++ L +FAE G V+SA+++ DR T RSRGF FV M + E ++AI
Sbjct: 3 IYISGLSYGVNNADLTNLFAEFGEVSSAKVILDRETGRSRGFAFVEMSNDTEGQKAIDEL 62
Query: 175 DGSVSADGICIAIVLIEP 192
+G V D I++ + P
Sbjct: 63 NG-VEYDSKVISVSVARP 79
>gi|425453862|ref|ZP_18833615.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9807]
gi|389799968|emb|CCI20517.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC 9807]
Length = 97
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP+ + + + EVF E GT+ + DR T R RGF FV M + E+ AI
Sbjct: 3 IYVGNLPFEVDQNDVVEVFTEYGTIKRVHLPMDRETKRKRGFAFVEMETPEQESAAIAAL 62
Query: 175 DGS 177
DG+
Sbjct: 63 DGA 65
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.128 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,157,337,723
Number of Sequences: 23463169
Number of extensions: 126155848
Number of successful extensions: 2229337
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 18726
Number of HSP's successfully gapped in prelim test: 6285
Number of HSP's that attempted gapping in prelim test: 2010534
Number of HSP's gapped (non-prelim): 152811
length of query: 222
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 85
effective length of database: 9,144,741,214
effective search space: 777303003190
effective search space used: 777303003190
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 74 (33.1 bits)