Query 027505
Match_columns 222
No_of_seqs 254 out of 2179
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 10:55:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01645 half-pint poly-U bin 99.9 1.2E-25 2.6E-30 205.2 9.8 172 15-194 109-285 (612)
2 TIGR01659 sex-lethal sex-letha 99.9 2.1E-25 4.5E-30 193.5 10.1 162 14-194 108-276 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5.9E-25 1.3E-29 191.5 9.9 160 14-192 4-170 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 3.8E-24 8.3E-29 186.4 9.6 177 15-194 91-350 (352)
5 TIGR01622 SF-CC1 splicing fact 99.9 8.5E-24 1.8E-28 190.4 9.8 171 15-192 91-265 (457)
6 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.5E-23 3.2E-28 191.1 10.8 175 15-192 177-374 (509)
7 TIGR01628 PABP-1234 polyadenyl 99.9 1.3E-23 2.7E-28 193.9 9.8 184 16-217 3-193 (562)
8 TIGR01628 PABP-1234 polyadenyl 99.9 3.6E-23 7.8E-28 190.9 10.0 187 15-216 90-299 (562)
9 KOG0127 Nucleolar protein fibr 99.9 6.1E-22 1.3E-26 174.0 10.0 178 13-194 5-197 (678)
10 TIGR01648 hnRNP-R-Q heterogene 99.9 6.5E-22 1.4E-26 180.4 9.8 177 15-216 60-247 (578)
11 KOG0110 RNA-binding protein (R 99.9 1.4E-22 3.1E-27 182.5 3.9 168 16-193 518-693 (725)
12 TIGR01659 sex-lethal sex-letha 99.8 2.1E-20 4.5E-25 162.4 12.9 106 108-217 103-208 (346)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 6.2E-21 1.4E-25 173.0 10.0 172 12-192 95-350 (481)
14 TIGR01648 hnRNP-R-Q heterogene 99.8 1.3E-20 2.8E-25 172.0 10.5 179 15-215 140-354 (578)
15 PLN03134 glycine-rich RNA-bind 99.8 9.8E-20 2.1E-24 139.8 12.9 85 110-195 32-116 (144)
16 KOG0148 Apoptosis-promoting RN 99.8 1.2E-20 2.6E-25 153.5 8.2 170 16-194 65-239 (321)
17 TIGR01645 half-pint poly-U bin 99.8 1.4E-19 3E-24 165.7 11.7 108 109-217 104-219 (612)
18 KOG4205 RNA-binding protein mu 99.8 8.4E-20 1.8E-24 155.0 6.0 167 15-195 8-178 (311)
19 KOG0124 Polypyrimidine tract-b 99.8 4.9E-19 1.1E-23 149.5 8.4 169 15-191 115-288 (544)
20 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 7.2E-19 1.6E-23 159.5 8.2 165 15-192 4-173 (481)
21 KOG0113 U1 small nuclear ribon 99.8 4.6E-18 1E-22 140.2 10.7 91 104-195 93-183 (335)
22 KOG0117 Heterogeneous nuclear 99.8 4.9E-18 1.1E-22 146.5 11.3 94 110-212 81-174 (506)
23 KOG0144 RNA-binding protein CU 99.8 5E-19 1.1E-23 152.0 5.0 168 11-196 32-209 (510)
24 KOG0127 Nucleolar protein fibr 99.7 3.4E-18 7.3E-23 150.6 9.2 175 18-194 122-379 (678)
25 KOG0149 Predicted RNA-binding 99.7 5E-18 1.1E-22 136.0 7.6 77 112-190 12-88 (247)
26 TIGR01622 SF-CC1 splicing fact 99.7 3.9E-17 8.4E-22 147.2 13.2 106 109-216 86-200 (457)
27 KOG0117 Heterogeneous nuclear 99.7 1.6E-17 3.4E-22 143.4 9.7 169 16-195 86-333 (506)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.7 4.8E-18 1E-22 154.9 6.7 175 15-192 297-501 (509)
29 KOG0145 RNA-binding protein EL 99.7 3.6E-18 7.7E-23 138.6 4.5 159 15-192 42-208 (360)
30 PF00076 RRM_1: RNA recognitio 99.7 7.1E-17 1.5E-21 107.9 9.6 70 115-186 1-70 (70)
31 KOG0148 Apoptosis-promoting RN 99.7 4E-17 8.8E-22 133.1 9.1 100 112-212 62-174 (321)
32 KOG0131 Splicing factor 3b, su 99.7 3.3E-17 7.2E-22 126.6 7.4 104 109-215 6-109 (203)
33 KOG0131 Splicing factor 3b, su 99.7 6.3E-18 1.4E-22 130.6 2.6 165 15-197 11-181 (203)
34 KOG0147 Transcriptional coacti 99.7 3E-17 6.4E-22 144.9 5.7 173 15-192 181-357 (549)
35 KOG0122 Translation initiation 99.7 2.6E-16 5.5E-21 126.8 10.0 85 109-194 186-270 (270)
36 KOG0121 Nuclear cap-binding pr 99.6 4.9E-16 1.1E-20 113.7 7.6 81 111-192 35-115 (153)
37 KOG0125 Ataxin 2-binding prote 99.6 5.5E-16 1.2E-20 129.5 8.9 84 107-193 91-174 (376)
38 KOG0123 Polyadenylate-binding 99.6 4.5E-16 9.8E-21 136.1 8.7 167 23-216 8-181 (369)
39 PF14259 RRM_6: RNA recognitio 99.6 2.1E-15 4.6E-20 101.3 9.0 70 115-186 1-70 (70)
40 KOG0107 Alternative splicing f 99.6 1.7E-15 3.7E-20 116.5 9.1 82 110-197 8-89 (195)
41 PLN03120 nucleic acid binding 99.6 2.6E-15 5.6E-20 123.8 10.9 76 112-192 4-79 (260)
42 KOG0145 RNA-binding protein EL 99.6 3.3E-15 7.1E-20 121.5 10.0 101 111-215 40-140 (360)
43 PLN03213 repressor of silencin 99.6 3.2E-15 6.9E-20 130.8 10.1 77 111-192 9-87 (759)
44 KOG0123 Polyadenylate-binding 99.6 1.8E-15 4E-20 132.3 8.2 175 16-194 170-350 (369)
45 KOG0126 Predicted RNA-binding 99.6 1E-16 2.2E-21 123.9 0.3 79 111-190 34-112 (219)
46 KOG4207 Predicted splicing fac 99.6 2.5E-15 5.4E-20 118.4 6.9 83 108-191 9-91 (256)
47 KOG0111 Cyclophilin-type pepti 99.6 2.7E-15 5.8E-20 119.3 4.0 83 111-194 9-91 (298)
48 smart00362 RRM_2 RNA recogniti 99.6 5E-14 1.1E-18 93.3 9.6 71 114-187 1-71 (72)
49 KOG0108 mRNA cleavage and poly 99.5 1.8E-14 3.8E-19 127.6 8.7 81 113-194 19-99 (435)
50 PLN03121 nucleic acid binding 99.5 5.3E-14 1.1E-18 114.5 10.7 76 111-191 4-79 (243)
51 KOG0130 RNA-binding protein RB 99.5 4.4E-14 9.6E-19 104.4 9.1 91 104-195 64-154 (170)
52 KOG0110 RNA-binding protein (R 99.5 2.9E-14 6.2E-19 129.3 9.7 102 113-215 516-626 (725)
53 COG0724 RNA-binding proteins ( 99.5 5.2E-14 1.1E-18 116.1 10.6 79 112-191 115-193 (306)
54 smart00360 RRM RNA recognition 99.5 7.9E-14 1.7E-18 91.9 9.0 70 117-187 1-70 (71)
55 KOG0114 Predicted RNA-binding 99.5 1.1E-13 2.5E-18 97.8 9.2 82 109-194 15-96 (124)
56 KOG0109 RNA-binding protein LA 99.5 2.6E-14 5.7E-19 117.8 6.9 89 113-215 3-91 (346)
57 KOG0144 RNA-binding protein CU 99.5 3.5E-14 7.6E-19 122.4 7.9 103 111-215 33-137 (510)
58 KOG4205 RNA-binding protein mu 99.5 6.8E-14 1.5E-18 119.1 6.9 107 111-219 5-114 (311)
59 KOG0415 Predicted peptidyl pro 99.5 3.8E-13 8.2E-18 113.7 11.0 89 104-193 231-319 (479)
60 cd00590 RRM RRM (RNA recogniti 99.5 7.6E-13 1.6E-17 88.0 10.2 74 114-189 1-74 (74)
61 KOG0109 RNA-binding protein LA 99.5 3.6E-14 7.9E-19 117.0 3.6 145 16-194 5-151 (346)
62 KOG0124 Polypyrimidine tract-b 99.4 2.1E-13 4.5E-18 115.7 5.5 102 112-216 113-224 (544)
63 KOG0105 Alternative splicing f 99.4 1.2E-12 2.5E-17 101.8 8.1 80 110-193 4-83 (241)
64 smart00361 RRM_1 RNA recogniti 99.4 2.3E-12 5E-17 86.8 8.4 61 126-187 2-69 (70)
65 KOG4212 RNA-binding protein hn 99.4 1.9E-12 4.1E-17 112.1 9.0 101 111-213 43-147 (608)
66 PF13893 RRM_5: RNA recognitio 99.3 9.1E-12 2E-16 80.0 8.4 56 129-190 1-56 (56)
67 KOG4208 Nucleolar RNA-binding 99.3 1.2E-11 2.7E-16 97.6 8.5 82 111-193 48-130 (214)
68 KOG0146 RNA-binding protein ET 99.3 4.3E-12 9.3E-17 103.8 5.7 88 107-195 280-367 (371)
69 KOG4211 Splicing factor hnRNP- 99.3 2.9E-12 6.4E-17 112.3 4.4 171 10-190 7-179 (510)
70 KOG0132 RNA polymerase II C-te 99.2 1.3E-11 2.8E-16 113.2 7.1 97 111-214 420-518 (894)
71 KOG4206 Spliceosomal protein s 99.2 3.6E-11 7.8E-16 96.3 8.4 80 111-194 8-91 (221)
72 KOG0153 Predicted RNA-binding 99.2 9.9E-11 2.1E-15 98.9 9.2 80 109-194 225-304 (377)
73 KOG0105 Alternative splicing f 99.2 6.8E-11 1.5E-15 92.1 6.5 156 15-179 8-175 (241)
74 KOG0120 Splicing factor U2AF, 99.2 3.6E-11 7.9E-16 107.5 5.7 180 12-194 174-370 (500)
75 KOG4661 Hsp27-ERE-TATA-binding 99.0 7.5E-10 1.6E-14 98.9 7.8 82 112-194 405-486 (940)
76 KOG4212 RNA-binding protein hn 99.0 6.8E-10 1.5E-14 96.5 7.2 77 108-190 532-608 (608)
77 KOG0226 RNA-binding proteins [ 99.0 4.8E-10 1E-14 91.2 5.9 83 107-190 185-267 (290)
78 KOG0146 RNA-binding protein ET 99.0 9.7E-10 2.1E-14 90.2 6.7 83 111-194 18-102 (371)
79 KOG0533 RRM motif-containing p 99.0 2.8E-09 6.2E-14 87.7 9.3 80 111-192 82-161 (243)
80 KOG0147 Transcriptional coacti 99.0 1.7E-10 3.6E-15 102.6 1.5 106 109-216 176-292 (549)
81 KOG1548 Transcription elongati 99.0 2.3E-09 5.1E-14 90.7 7.8 79 111-191 133-219 (382)
82 KOG4211 Splicing factor hnRNP- 98.9 7.7E-09 1.7E-13 91.1 10.7 103 110-217 8-118 (510)
83 KOG0106 Alternative splicing f 98.9 4.2E-10 9.1E-15 90.8 1.5 161 15-190 3-168 (216)
84 KOG4209 Splicing factor RNPS1, 98.9 4.3E-09 9.3E-14 86.6 7.1 83 109-193 98-180 (231)
85 KOG0116 RasGAP SH3 binding pro 98.9 8.6E-09 1.9E-13 91.2 8.7 82 111-194 287-368 (419)
86 PF04059 RRM_2: RNA recognitio 98.8 4.6E-08 9.9E-13 69.7 9.4 80 113-192 2-86 (97)
87 KOG4206 Spliceosomal protein s 98.8 5E-08 1.1E-12 78.4 9.8 137 50-191 49-220 (221)
88 KOG4210 Nuclear localization s 98.8 8.8E-09 1.9E-13 87.4 5.7 171 15-196 90-267 (285)
89 KOG4660 Protein Mei2, essentia 98.7 9.1E-09 2E-13 91.9 4.9 72 109-186 72-143 (549)
90 KOG0106 Alternative splicing f 98.7 1.2E-08 2.5E-13 82.5 5.0 71 113-192 2-72 (216)
91 KOG0151 Predicted splicing reg 98.7 3E-08 6.6E-13 90.7 6.7 104 112-216 174-288 (877)
92 KOG0128 RNA-binding protein SA 98.6 7.7E-09 1.7E-13 96.2 1.1 142 15-192 669-814 (881)
93 KOG4454 RNA binding protein (R 98.6 2.5E-08 5.3E-13 79.8 2.2 79 110-191 7-85 (267)
94 KOG1457 RNA binding protein (c 98.6 4.9E-07 1.1E-11 72.7 9.6 85 110-195 32-120 (284)
95 KOG1548 Transcription elongati 98.5 7.6E-07 1.6E-11 75.7 8.6 171 16-193 137-352 (382)
96 KOG1365 RNA-binding protein Fu 98.5 1E-07 2.3E-12 81.8 3.4 173 16-192 164-361 (508)
97 KOG1457 RNA binding protein (c 98.5 1.6E-07 3.4E-12 75.5 3.9 63 113-179 211-273 (284)
98 KOG1365 RNA-binding protein Fu 98.4 1.6E-07 3.5E-12 80.7 4.0 171 45-218 94-296 (508)
99 COG0724 RNA-binding proteins ( 98.3 1.8E-07 3.9E-12 76.9 1.7 157 14-172 116-285 (306)
100 KOG0120 Splicing factor U2AF, 98.3 1.3E-06 2.9E-11 78.5 5.8 153 39-192 314-491 (500)
101 COG5175 MOT2 Transcriptional r 98.2 6.5E-06 1.4E-10 70.0 7.6 81 111-192 113-202 (480)
102 PLN03134 glycine-rich RNA-bind 98.1 2E-07 4.3E-12 71.5 -2.5 78 8-87 29-111 (144)
103 KOG0129 Predicted RNA-binding 98.1 7.9E-06 1.7E-10 72.9 6.4 170 15-188 261-449 (520)
104 KOG1190 Polypyrimidine tract-b 98.0 3.4E-05 7.4E-10 67.1 9.6 75 112-192 297-372 (492)
105 KOG2314 Translation initiation 98.0 4.5E-05 9.8E-10 68.8 8.9 79 110-189 56-140 (698)
106 KOG1995 Conserved Zn-finger pr 97.9 1E-05 2.2E-10 69.2 4.5 83 111-194 65-155 (351)
107 KOG3152 TBP-binding protein, a 97.9 1.5E-05 3.1E-10 65.5 4.7 73 111-184 73-157 (278)
108 PLN03120 nucleic acid binding 97.8 1.4E-06 3.1E-11 72.3 -2.2 71 15-87 6-77 (260)
109 KOG0128 RNA-binding protein SA 97.8 8.7E-07 1.9E-11 82.8 -4.0 70 110-179 665-734 (881)
110 PF11608 Limkain-b1: Limkain b 97.8 0.0001 2.2E-09 50.7 7.0 68 113-191 3-75 (90)
111 KOG0129 Predicted RNA-binding 97.8 0.00013 2.8E-09 65.3 9.5 62 111-173 258-325 (520)
112 PLN03121 nucleic acid binding 97.7 3.3E-06 7.1E-11 69.2 -1.6 71 14-86 6-77 (243)
113 PLN03213 repressor of silencin 97.7 3.4E-06 7.4E-11 74.9 -1.9 72 14-88 11-86 (759)
114 KOG0125 Ataxin 2-binding prote 97.7 5.7E-06 1.2E-10 70.0 -1.0 80 7-88 90-172 (376)
115 PF08777 RRM_3: RNA binding mo 97.6 0.00014 3E-09 52.7 5.7 69 113-188 2-75 (105)
116 KOG0121 Nuclear cap-binding pr 97.6 7.3E-06 1.6E-10 60.6 -1.3 69 15-85 38-111 (153)
117 KOG0149 Predicted RNA-binding 97.6 8.1E-06 1.7E-10 66.2 -1.3 67 15-83 14-84 (247)
118 KOG4307 RNA binding protein RB 97.6 6.3E-05 1.4E-09 69.4 4.1 172 15-190 313-511 (944)
119 KOG4307 RNA binding protein RB 97.6 0.00034 7.4E-09 64.7 8.3 75 113-189 868-943 (944)
120 KOG4849 mRNA cleavage factor I 97.5 9.2E-05 2E-09 63.4 4.1 71 112-183 80-152 (498)
121 KOG0113 U1 small nuclear ribon 97.5 8.5E-06 1.8E-10 68.2 -2.4 71 15-87 103-178 (335)
122 KOG0122 Translation initiation 97.5 2.1E-05 4.6E-10 64.1 -0.3 64 15-80 191-259 (270)
123 KOG0112 Large RNA-binding prot 97.5 0.0002 4.3E-09 67.8 6.0 151 15-192 374-530 (975)
124 KOG4454 RNA binding protein (R 97.5 9.1E-06 2E-10 65.3 -2.8 133 14-179 10-150 (267)
125 KOG4207 Predicted splicing fac 97.3 2.4E-05 5.3E-10 62.4 -1.5 69 17-87 17-90 (256)
126 KOG2193 IGF-II mRNA-binding pr 97.3 0.00012 2.7E-09 64.0 2.4 77 113-196 2-79 (584)
127 KOG1190 Polypyrimidine tract-b 97.3 0.00067 1.5E-08 59.3 6.6 170 16-192 300-490 (492)
128 KOG0108 mRNA cleavage and poly 97.3 6.2E-05 1.3E-09 67.3 0.1 77 14-92 19-100 (435)
129 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00093 2E-08 42.2 5.4 52 113-171 2-53 (53)
130 PF00076 RRM_1: RNA recognitio 97.2 3.9E-06 8.5E-11 55.3 -6.6 63 17-81 2-68 (70)
131 KOG1456 Heterogeneous nuclear 97.0 0.0057 1.2E-07 53.1 9.3 77 110-192 285-362 (494)
132 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0065 1.4E-07 43.6 7.3 78 112-192 6-91 (100)
133 KOG2202 U2 snRNP splicing fact 96.8 0.00065 1.4E-08 56.0 2.1 61 128-190 84-145 (260)
134 KOG4210 Nuclear localization s 96.8 0.0016 3.5E-08 55.5 4.4 105 110-215 86-198 (285)
135 KOG1456 Heterogeneous nuclear 96.7 0.011 2.4E-07 51.4 8.9 72 118-194 128-200 (494)
136 KOG1855 Predicted RNA-binding 96.6 0.0029 6.2E-08 55.7 4.6 68 110-177 229-309 (484)
137 PF08952 DUF1866: Domain of un 96.6 0.016 3.4E-07 44.2 8.0 76 107-192 22-106 (146)
138 KOG2068 MOT2 transcription fac 96.6 0.0009 1.9E-08 57.2 1.3 82 111-194 76-164 (327)
139 PF14259 RRM_6: RNA recognitio 96.5 4.6E-05 9.9E-10 50.5 -5.5 62 17-80 2-67 (70)
140 KOG0107 Alternative splicing f 96.5 0.00029 6.3E-09 54.9 -1.9 68 15-87 12-82 (195)
141 KOG1996 mRNA splicing factor [ 96.3 0.017 3.6E-07 48.8 7.1 63 127-190 301-364 (378)
142 smart00362 RRM_2 RNA recogniti 96.2 0.00052 1.1E-08 44.3 -1.9 64 16-81 2-68 (72)
143 KOG0115 RNA-binding protein p5 96.1 0.0083 1.8E-07 49.6 4.2 62 113-175 32-93 (275)
144 KOG2416 Acinus (induces apopto 96.1 0.0077 1.7E-07 55.1 4.3 81 106-192 438-521 (718)
145 PF10309 DUF2414: Protein of u 96.1 0.058 1.2E-06 35.1 7.3 55 112-174 5-62 (62)
146 smart00360 RRM RNA recognition 95.9 0.0011 2.3E-08 42.6 -1.5 62 18-81 1-67 (71)
147 KOG0112 Large RNA-binding prot 95.8 0.0031 6.8E-08 60.0 0.7 82 109-192 369-450 (975)
148 smart00361 RRM_1 RNA recogniti 95.8 0.0037 8E-08 41.6 0.8 33 50-82 34-67 (70)
149 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.024 5.1E-07 44.9 5.2 80 111-190 6-95 (176)
150 KOG4676 Splicing factor, argin 95.1 0.044 9.6E-07 48.0 5.3 74 113-188 8-84 (479)
151 KOG4209 Splicing factor RNPS1, 94.9 0.017 3.7E-07 47.7 2.2 68 15-84 103-174 (231)
152 KOG0126 Predicted RNA-binding 94.9 0.005 1.1E-07 48.5 -0.9 69 15-85 37-110 (219)
153 KOG2193 IGF-II mRNA-binding pr 94.6 0.0021 4.6E-08 56.5 -4.0 146 17-190 5-154 (584)
154 KOG2135 Proteins containing th 94.1 0.035 7.7E-07 49.6 2.4 72 113-192 373-445 (526)
155 PF08675 RNA_bind: RNA binding 94.0 0.37 8E-06 33.3 6.7 57 111-176 8-64 (87)
156 KOG4660 Protein Mei2, essentia 93.9 0.12 2.6E-06 47.2 5.4 82 111-192 387-472 (549)
157 PF15023 DUF4523: Protein of u 93.3 0.68 1.5E-05 35.3 7.8 75 109-192 83-161 (166)
158 cd00590 RRM RRM (RNA recogniti 93.1 0.0084 1.8E-07 38.7 -2.5 63 16-80 2-68 (74)
159 PF07576 BRAP2: BRCA1-associat 93.0 1.5 3.3E-05 31.9 9.1 65 113-179 13-79 (110)
160 KOG0114 Predicted RNA-binding 93.0 0.019 4E-07 41.3 -0.9 67 17-85 22-90 (124)
161 PF04847 Calcipressin: Calcipr 92.9 0.41 8.8E-06 38.2 6.5 62 125-193 8-71 (184)
162 KOG4208 Nucleolar RNA-binding 92.9 0.04 8.7E-07 44.2 0.7 42 42-83 78-123 (214)
163 KOG0130 RNA-binding protein RB 92.8 0.017 3.7E-07 43.4 -1.3 71 15-87 74-149 (170)
164 KOG2591 c-Mpl binding protein, 92.7 0.22 4.8E-06 45.6 5.3 73 106-186 169-245 (684)
165 KOG4676 Splicing factor, argin 91.8 0.012 2.6E-07 51.4 -3.8 133 53-192 93-225 (479)
166 PF11767 SET_assoc: Histone ly 91.7 1.2 2.6E-05 29.3 6.6 54 123-186 11-64 (66)
167 KOG0111 Cyclophilin-type pepti 91.1 0.07 1.5E-06 43.4 0.2 55 31-85 26-85 (298)
168 KOG2253 U1 snRNP complex, subu 91.1 0.17 3.6E-06 47.2 2.6 71 109-189 37-107 (668)
169 PF03880 DbpA: DbpA RNA bindin 89.6 2 4.2E-05 28.7 6.3 59 122-190 11-74 (74)
170 PF13893 RRM_5: RNA recognitio 86.0 0.18 3.8E-06 31.5 -0.5 30 53-82 21-51 (56)
171 KOG4285 Mitotic phosphoprotein 85.6 2.9 6.3E-05 35.7 6.3 67 114-189 199-266 (350)
172 KOG4410 5-formyltetrahydrofola 81.1 5.7 0.00012 33.8 6.3 48 111-164 329-377 (396)
173 KOG4574 RNA-binding protein (c 80.1 1.4 3.1E-05 42.5 2.7 74 115-194 301-375 (1007)
174 KOG0804 Cytoplasmic Zn-finger 79.9 8.5 0.00018 34.7 7.3 66 112-179 74-140 (493)
175 KOG0116 RasGAP SH3 binding pro 79.3 0.26 5.6E-06 44.2 -2.3 67 16-84 291-361 (419)
176 KOG4483 Uncharacterized conser 71.2 6.7 0.00015 34.9 4.3 55 111-172 390-445 (528)
177 KOG0533 RRM motif-containing p 70.9 0.93 2E-05 37.7 -0.9 71 12-84 82-156 (243)
178 KOG2318 Uncharacterized conser 63.6 38 0.00083 31.7 7.6 71 109-179 171-293 (650)
179 KOG0226 RNA-binding proteins [ 58.7 4.4 9.5E-05 33.9 0.8 103 113-218 97-206 (290)
180 PF03468 XS: XS domain; Inter 55.4 35 0.00075 25.0 5.0 45 125-172 30-75 (116)
181 PF07292 NID: Nmi/IFP 35 domai 53.1 31 0.00068 24.0 4.2 56 157-212 1-62 (88)
182 PF10567 Nab6_mRNP_bdg: RNA-re 52.4 29 0.00062 29.7 4.6 84 106-190 9-105 (309)
183 PF15513 DUF4651: Domain of un 50.5 41 0.00089 21.8 4.1 18 127-144 9-26 (62)
184 smart00596 PRE_C2HC PRE_C2HC d 44.9 41 0.0009 22.3 3.6 60 127-190 2-62 (69)
185 PF07530 PRE_C2HC: Associated 42.0 57 0.0012 21.4 4.0 62 127-192 2-64 (68)
186 KOG1295 Nonsense-mediated deca 40.5 40 0.00087 29.8 3.9 73 112-184 7-82 (376)
187 KOG2891 Surface glycoprotein [ 39.4 45 0.00098 28.4 3.9 48 112-159 149-213 (445)
188 PF08206 OB_RNB: Ribonuclease 38.9 13 0.00029 23.4 0.6 38 153-192 7-45 (58)
189 PF13689 DUF4154: Domain of un 38.7 1.2E+02 0.0026 22.7 5.9 53 154-211 26-78 (145)
190 PF02714 DUF221: Domain of unk 38.5 43 0.00093 28.6 3.8 35 157-194 1-35 (325)
191 PRK01178 rps24e 30S ribosomal 38.0 1.2E+02 0.0025 21.7 5.3 46 123-169 30-80 (99)
192 KOG4019 Calcineurin-mediated s 36.3 36 0.00078 27.1 2.7 76 112-194 10-91 (193)
193 KOG2295 C2H2 Zn-finger protein 35.0 5.7 0.00012 36.7 -2.2 69 111-179 230-298 (648)
194 KOG3424 40S ribosomal protein 33.7 1.7E+02 0.0037 21.6 5.6 46 123-169 34-84 (132)
195 KOG4849 mRNA cleavage factor I 33.5 20 0.00044 31.4 1.0 69 12-82 79-154 (498)
196 COG5638 Uncharacterized conser 33.4 1E+02 0.0022 27.9 5.2 41 105-145 139-184 (622)
197 KOG0415 Predicted peptidyl pro 32.7 16 0.00036 32.0 0.3 70 17-88 243-317 (479)
198 PF09707 Cas_Cas2CT1978: CRISP 31.3 1.2E+02 0.0026 21.0 4.3 46 114-162 27-72 (86)
199 KOG4661 Hsp27-ERE-TATA-binding 30.9 6.6 0.00014 36.6 -2.5 71 16-88 408-483 (940)
200 PTZ00071 40S ribosomal protein 28.6 2.1E+02 0.0046 21.5 5.6 46 123-169 35-86 (132)
201 COG0030 KsgA Dimethyladenosine 28.5 70 0.0015 27.0 3.4 35 113-147 96-130 (259)
202 PRK11558 putative ssRNA endonu 27.7 1.2E+02 0.0025 21.6 3.9 47 114-163 29-75 (97)
203 PF03439 Spt5-NGN: Early trans 27.7 1.1E+02 0.0024 20.8 3.7 27 152-178 42-68 (84)
204 PF01282 Ribosomal_S24e: Ribos 27.5 2.1E+02 0.0045 19.6 6.0 46 123-169 12-62 (84)
205 COG0150 PurM Phosphoribosylami 24.9 22 0.00047 31.1 -0.3 48 126-177 275-322 (345)
206 KOG2314 Translation initiation 24.3 36 0.00078 31.8 1.0 31 50-80 102-133 (698)
207 COG5193 LHP1 La protein, small 23.8 34 0.00074 30.6 0.7 60 112-171 174-243 (438)
208 PF04026 SpoVG: SpoVG; InterP 21.3 1.9E+02 0.0042 19.8 3.9 26 138-163 2-27 (84)
209 PF14111 DUF4283: Domain of un 20.8 1.1E+02 0.0023 22.8 2.9 83 51-145 53-138 (153)
No 1
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.2e-25 Score=205.23 Aligned_cols=172 Identities=10% Similarity=0.146 Sum_probs=140.6
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~ 89 (222)
..||.||+|.+ +++.|+..|.. .++..+.+..+ ++++|||||+|.++++++.| ..++|..+.++...+.....
T Consensus 109 rLfVGnLp~~~--tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 109 RVYVGSISFEL--REDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred EEEEcCCCCCC--CHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 56899999997 99999999954 67777776554 78999999999999999999 67899999999876643221
Q ss_pred hhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
..... .............++|||+|||+++++++|+++|+.||.|.+++|++|+.+|++||||||+|.+.++|.+
T Consensus 187 ~p~a~-----~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 187 MPQAQ-----PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccc-----cccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 11000 0000011122345799999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHhCCCeecCCcEEEEEEeccCC
Q 027505 170 AIRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 170 Al~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
|++.||+..+ +|+.|+|.++.+.+
T Consensus 262 AI~amNg~el-gGr~LrV~kAi~pP 285 (612)
T TIGR01645 262 AIASMNLFDL-GGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHhCCCee-CCeEEEEEecCCCc
Confidence 9999999999 99999999997644
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.92 E-value=2.1e-25 Score=193.52 Aligned_cols=162 Identities=22% Similarity=0.305 Sum_probs=136.2
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
-..||.||++++ +++.|+..|.. .++..+++..+ ++++|||||+|.++++|..| ..+++..+.++.+.+....
T Consensus 108 ~~LfVgnLp~~~--te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 108 TNLIVNYLPQDM--TDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 367899999998 99999999966 46666666543 68999999999999999999 5789999988877654332
Q ss_pred hhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHH
Q 027505 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~ 168 (222)
... .....++|||+|||+.+++++|+++|++||.|..++|++|+.+|++||||||+|.+.++|+
T Consensus 186 p~~----------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 249 (346)
T TIGR01659 186 PGG----------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQ 249 (346)
T ss_pred ccc----------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 110 1123468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeecCC--cEEEEEEeccCC
Q 027505 169 EAIRLFDGSVSADG--ICIAIVLIEPFN 194 (222)
Q Consensus 169 ~Al~~l~g~~~~~g--r~i~v~~a~~~~ 194 (222)
+|++.||+..+ .+ ++|.|.+++...
T Consensus 250 ~Ai~~lng~~~-~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 250 EAISALNNVIP-EGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHhCCCcc-CCCceeEEEEECCccc
Confidence 99999999988 55 689999987643
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=5.9e-25 Score=191.46 Aligned_cols=160 Identities=22% Similarity=0.329 Sum_probs=134.8
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
...||.||++.+ ++..|...|.. .++..+++... ++++|||||+|.+.++|+.| ..+++..+.++...+....
T Consensus 4 ~~l~V~nLp~~~--~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 4 TNLIVNYLPQTM--TQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 367899999998 99999999955 57777777543 78999999999999999999 6789999998876654322
Q ss_pred hhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHH
Q 027505 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~ 168 (222)
.. .......+|||+|||..+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|+
T Consensus 82 ~~----------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~ 145 (352)
T TIGR01661 82 PS----------------SDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEAD 145 (352)
T ss_pred cc----------------ccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 10 11123568999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHhCCCeecCC--cEEEEEEecc
Q 027505 169 EAIRLFDGSVSADG--ICIAIVLIEP 192 (222)
Q Consensus 169 ~Al~~l~g~~~~~g--r~i~v~~a~~ 192 (222)
+|++.|||..+ .| ++|.|.++..
T Consensus 146 ~ai~~l~g~~~-~g~~~~i~v~~a~~ 170 (352)
T TIGR01661 146 RAIKTLNGTTP-SGCTEPITVKFANN 170 (352)
T ss_pred HHHHHhCCCcc-CCCceeEEEEECCC
Confidence 99999999988 66 5688888743
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.90 E-value=3.8e-24 Score=186.37 Aligned_cols=177 Identities=15% Similarity=0.175 Sum_probs=129.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCC--Ccch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQD--EPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~--~~~~ 87 (222)
..||.||+..+ +++.|...|.. .++....+... +.++|||||+|.+.+++..+ ..+++..+.+.... +...
T Consensus 91 ~l~v~~l~~~~--~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 91 NLYVSGLPKTM--TQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred eEEECCccccC--CHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 57899999998 88889888864 34333333332 57899999999999999999 67888777653211 1000
Q ss_pred hhhh-------hH-HHHhh------------------------------------------------------hhc----
Q 027505 88 EQEE-------EE-EEEAV------------------------------------------------------EEE---- 101 (222)
Q Consensus 88 ~~~~-------~~-~~~~~------------------------------------------------------~~~---- 101 (222)
.... .. ..... ...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 0000 00 00000 000
Q ss_pred ----------ccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q 027505 102 ----------EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171 (222)
Q Consensus 102 ----------~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al 171 (222)
....+.....+..|||+|||+++++++|+++|++||.|.+++|++|+.+|++||||||+|.+.++|.+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 0000001223447999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeecCCcEEEEEEeccCC
Q 027505 172 RLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 172 ~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
..|||..+ +||.|+|.|+.++.
T Consensus 329 ~~lnG~~~-~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 329 LSLNGYTL-GNRVLQVSFKTNKA 350 (352)
T ss_pred HHhCCCEE-CCeEEEEEEccCCC
Confidence 99999999 99999999998754
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=8.5e-24 Score=190.38 Aligned_cols=171 Identities=20% Similarity=0.273 Sum_probs=138.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 90 (222)
+.||.||++.+ ++..|...|.. .++..+.+... ++++|||||+|.+.++|.+|..+++..+.+..+.+......
T Consensus 91 ~l~V~nlp~~~--~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 91 TVFVLQLALKA--RERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence 67899999998 89999999855 45555555443 78999999999999999999999999998887765443322
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
........ ...........+|||+|||+.+++++|+++|++||.|..|.++.+..+|+++|||||+|.+.++|.+|
T Consensus 169 ~~~~~~~~----~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 169 KNRAAKAA----THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred hhhhhhcc----cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 21111100 00111122368999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHhCCCeecCCcEEEEEEecc
Q 027505 171 IRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 171 l~~l~g~~~~~gr~i~v~~a~~ 192 (222)
+..|+|..| .|+.|.|.++..
T Consensus 245 ~~~l~g~~i-~g~~i~v~~a~~ 265 (457)
T TIGR01622 245 LEVMNGFEL-AGRPIKVGYAQD 265 (457)
T ss_pred HHhcCCcEE-CCEEEEEEEccC
Confidence 999999999 899999999753
No 6
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.5e-23 Score=191.10 Aligned_cols=175 Identities=12% Similarity=0.136 Sum_probs=132.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC----------CCCCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT----------KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~----------~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
..||.||++.+ +++.|...|.. .+..++.-......+|||||+|.+.++|..|..++|..+.+.....
T Consensus 177 ~lyVgnLp~~~--t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v 254 (509)
T TIGR01642 177 RLYVGGIPPEF--VEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKI 254 (509)
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEe
Confidence 47899999998 99999998853 1222332223357899999999999999999989998888866544
Q ss_pred cchhhhhhHHH-----Hhhhh------c--ccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCC
Q 027505 85 PETEQEEEEEE-----EAVEE------E--EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151 (222)
Q Consensus 85 ~~~~~~~~~~~-----~~~~~------~--~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg 151 (222)
........... ..... . ...........++|||+|||+.+++++|+++|++||.|..+.|+.+..+|
T Consensus 255 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g 334 (509)
T TIGR01642 255 RRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG 334 (509)
T ss_pred cCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC
Confidence 32111100000 00000 0 00111123456799999999999999999999999999999999998899
Q ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 152 RSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 152 ~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
+++|||||+|.+.++|..|+..|+|..+ +|+.|.|.++..
T Consensus 335 ~~~g~afv~f~~~~~a~~A~~~l~g~~~-~~~~l~v~~a~~ 374 (509)
T TIGR01642 335 LSKGYAFCEYKDPSVTDVAIAALNGKDT-GDNKLHVQRACV 374 (509)
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEEECcc
Confidence 9999999999999999999999999999 899999999854
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=1.3e-23 Score=193.91 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=148.4
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhh
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~ 90 (222)
.||.||++++ +++.|...|.. .++..+++... ++++|||||+|.+.++|..| ..+++..+.++..........
T Consensus 3 l~VgnLp~~v--te~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 3 LYVGDLDPDV--TEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 5799999998 99999999954 56666665443 68899999999999999999 567887788877665433211
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
. ........+|||+|||.++++++|+++|++||.|.+|+++.+. +|+++|||||+|.+.++|++|
T Consensus 81 ~--------------~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~A 145 (562)
T TIGR01628 81 P--------------SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAA 145 (562)
T ss_pred c--------------cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHH
Confidence 1 0111234579999999999999999999999999999999986 899999999999999999999
Q ss_pred HHHhCCCeecCCcEEEEEEeccCCCCC--CCCCceeEEecCCcCccccc
Q 027505 171 IRLFDGSVSADGICIAIVLIEPFNCQH--FGNGRCLVFLSYIILDVHSI 217 (222)
Q Consensus 171 l~~l~g~~~~~gr~i~v~~a~~~~~~~--~~~~r~~l~vgnl~~~v~~~ 217 (222)
++.|||..+ +|+.|.|....++.... .....+.|||+||++++++-
T Consensus 146 i~~lng~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee 193 (562)
T TIGR01628 146 IQKVNGMLL-NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNED 193 (562)
T ss_pred HHHhcccEe-cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHH
Confidence 999999999 89999998766544331 23345689999999998753
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=3.6e-23 Score=190.89 Aligned_cols=187 Identities=19% Similarity=0.225 Sum_probs=147.1
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~ 90 (222)
..||+||+.++ +.+.|...|.. ..+...++... +.++|||||.|.+.++|..| ..+++..+.++...+......
T Consensus 90 ~vfV~nLp~~~--~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 90 NIFVKNLDKSV--DNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred ceEEcCCCccC--CHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 46899999998 88889988855 45555555443 67999999999999999999 678888887776544221111
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
.+.. .......++|||+|||+++++++|+++|++||.|.++.++.+. +|+++|||||+|.+.++|.+|
T Consensus 168 ~~~~-----------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~A 235 (562)
T TIGR01628 168 HERE-----------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKA 235 (562)
T ss_pred cccc-----------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHH
Confidence 1110 1123345689999999999999999999999999999999986 899999999999999999999
Q ss_pred HHHhCCCeecC----CcEEEEEEeccCCCC---------------CCCCCceeEEecCCcCcccc
Q 027505 171 IRLFDGSVSAD----GICIAIVLIEPFNCQ---------------HFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 171 l~~l~g~~~~~----gr~i~v~~a~~~~~~---------------~~~~~r~~l~vgnl~~~v~~ 216 (222)
++.|+|..+ + |+.+.|.+++.+..+ ........|||+||++++++
T Consensus 236 v~~l~g~~i-~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~ 299 (562)
T TIGR01628 236 VEEMNGKKI-GLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTD 299 (562)
T ss_pred HHHhCCcEe-cccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCH
Confidence 999999999 8 999999888664421 01123457999999998875
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=6.1e-22 Score=174.00 Aligned_cols=178 Identities=18% Similarity=0.229 Sum_probs=135.7
Q ss_pred hhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 13 SLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 13 ~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+.+.||++|+|++ +.+.|.+.|.. .|++-.-++.. ...||||||.|+..++++.+ ....+..+.++...+...
T Consensus 5 g~TlfV~~lp~~~--~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 5 GATLFVSRLPFSS--TGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred CceEEEecCCCcc--chhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 4688999999998 99999999976 56655444444 47899999999999999988 556666777776655433
Q ss_pred hhhhhHH----HHhhhhcc-----ccc-ccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEE
Q 027505 88 EQEEEEE----EEAVEEEE-----EPK-VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157 (222)
Q Consensus 88 ~~~~~~~----~~~~~~~~-----~~~-~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~a 157 (222)
......+ .+....++ .+. .....+..+|.|+||||.+.+.+|+.+|+.||.|..|.|++.+ .|+.+|||
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFa 161 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFA 161 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceE
Confidence 2221111 00000000 011 1112236789999999999999999999999999999999876 67777999
Q ss_pred EEEECCHHHHHHHHHHhCCCeecCCcEEEEEEeccCC
Q 027505 158 FVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 158 FV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
||.|....+|.+|++.+|+..| +||+|-|+||-+++
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~i-~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNKI-DGRPVAVDWAVDKD 197 (678)
T ss_pred EEEEeeHHHHHHHHHhccCcee-cCceeEEeeecccc
Confidence 9999999999999999999999 99999999996643
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.86 E-value=6.5e-22 Score=180.45 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=136.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCccc-CCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVT-EDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~-~~~~~~~~~~~ 89 (222)
..||.||+++. +++.|...|.. .++..+++..+ ++++|||||+|.+.++|+.| ..+++..+. ++...+.
T Consensus 60 ~lFVgnLp~~~--tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~---- 133 (578)
T TIGR01648 60 EVFVGKIPRDL--YEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC---- 133 (578)
T ss_pred EEEeCCCCCCC--CHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc----
Confidence 68999999997 99999999965 45566666543 78999999999999999999 677888774 3322211
Q ss_pred hhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCC-eeEEEE-eecCCCCCcccEEEEEECCHHHH
Q 027505 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEI-VYDRVTDRSRGFGFVTMGSVEEA 167 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~-i~~~~l-~~d~~tg~~rG~aFV~f~~~~~a 167 (222)
.....++|||+|||..+++++|.+.|++++. +.++.+ ..+...++++|||||+|.++++|
T Consensus 134 ------------------~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edA 195 (578)
T TIGR01648 134 ------------------ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAA 195 (578)
T ss_pred ------------------ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHH
Confidence 1123578999999999999999999999864 444433 33334578999999999999999
Q ss_pred HHHHHHhCC-C-eecCCcEEEEEEeccCCCCC--CCCCceeEEecCCcCcccc
Q 027505 168 KEAIRLFDG-S-VSADGICIAIVLIEPFNCQH--FGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 168 ~~Al~~l~g-~-~~~~gr~i~v~~a~~~~~~~--~~~~r~~l~vgnl~~~v~~ 216 (222)
..|++.|+. . .+ .|+.|.|.|+.+..... ......+|||+||++++++
T Consensus 196 a~AirkL~~gki~l-~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~te 247 (578)
T TIGR01648 196 AMARRKLMPGRIQL-WGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTE 247 (578)
T ss_pred HHHHHHhhccceEe-cCceEEEEeecccccccccccccccEEEEeCCCCCCCH
Confidence 999998764 3 45 79999999998865321 1223468999999999865
No 11
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=1.4e-22 Score=182.55 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=134.5
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccc------cccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLK------LEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~------l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
-|++||+|+| +.+.+..+|.. ....++. .-....|+|||||+|.++++|+.+ ..++|+.++|+.......
T Consensus 518 lfvkNlnf~T--t~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 518 LFVKNLNFDT--TLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhcCCccc--chhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 6899999999 89999999965 1111111 001358999999999999999999 788999999999887666
Q ss_pred hhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHH
Q 027505 88 EQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167 (222)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a 167 (222)
+........ .........++|+|+|||+.++-.+++++|..||.+.+++|+.....+.+||||||+|-++.+|
T Consensus 596 ~~k~~~~~g-------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 596 ENKPASTVG-------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred cCccccccc-------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 521111111 1111222367999999999999999999999999999999998755677899999999999999
Q ss_pred HHHHHHhCCCeecCCcEEEEEEeccC
Q 027505 168 KEAIRLFDGSVSADGICIAIVLIEPF 193 (222)
Q Consensus 168 ~~Al~~l~g~~~~~gr~i~v~~a~~~ 193 (222)
.+|+..|.++++ .||+|+++||..-
T Consensus 669 ~nA~~al~STHl-yGRrLVLEwA~~d 693 (725)
T KOG0110|consen 669 KNAFDALGSTHL-YGRRLVLEWAKSD 693 (725)
T ss_pred HHHHHhhcccce-echhhheehhccc
Confidence 999999999999 8999999999763
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.84 E-value=2.1e-20 Score=162.36 Aligned_cols=106 Identities=21% Similarity=0.330 Sum_probs=95.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.++++|++|++.|++..+ .+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l-~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV-RNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc-CCceeee
Confidence 344678999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred EEeccCCCCCCCCCceeEEecCCcCccccc
Q 027505 188 VLIEPFNCQHFGNGRCLVFLSYIILDVHSI 217 (222)
Q Consensus 188 ~~a~~~~~~~~~~~r~~l~vgnl~~~v~~~ 217 (222)
.++++..... ...+|||+||++++++-
T Consensus 182 ~~a~p~~~~~---~~~~lfV~nLp~~vtee 208 (346)
T TIGR01659 182 SYARPGGESI---KDTNLYVTNLPRTITDD 208 (346)
T ss_pred eccccccccc---ccceeEEeCCCCcccHH
Confidence 9998744321 34579999999998763
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.84 E-value=6.2e-21 Score=172.97 Aligned_cols=172 Identities=13% Similarity=0.134 Sum_probs=124.1
Q ss_pred chhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCC--------
Q 027505 12 SSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDS-------- 81 (222)
Q Consensus 12 ~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~-------- 81 (222)
..+..+|.||++.+ +++.|...|.. ..+..+.+... ...|+|||+|.+.++|..| ..++|..+.+..
T Consensus 95 ~~~~v~v~nl~~~v--t~~~L~~~F~~~G~V~~v~i~~~-~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 95 KVLRVIVENPMYPI--TLDVLYQIFNPYGKVLRIVTFTK-NNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred ceEEEEEcCCCCCC--CHHHHHHHHhccCCEEEEEEEec-CCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 44678899999997 88899999954 45555555443 4458999999999999999 679999886431
Q ss_pred ----CCCcchhhhh----------hHH---H----Hhhhhc------------------------------------c--
Q 027505 82 ----QDEPETEQEE----------EEE---E----EAVEEE------------------------------------E-- 102 (222)
Q Consensus 82 ----~~~~~~~~~~----------~~~---~----~~~~~~------------------------------------~-- 102 (222)
..+....... +.. . ...... .
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 1000000000 000 0 000000 0
Q ss_pred ------cc--------cccCCCCCCEEEEcCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHH
Q 027505 103 ------EP--------KVAASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167 (222)
Q Consensus 103 ------~~--------~~~~~~~~~~ifV~nLp~-~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a 167 (222)
.. ........++|||+|||+ .+++++|+++|++||.|.+|++++++ +|||||+|.+.++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A 326 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQA 326 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHH
Confidence 00 000123567999999998 69999999999999999999999864 69999999999999
Q ss_pred HHHHHHhCCCeecCCcEEEEEEecc
Q 027505 168 KEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 168 ~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
..|+..|||..+ .|++|.|.+++.
T Consensus 327 ~~Ai~~lng~~l-~g~~l~v~~s~~ 350 (481)
T TIGR01649 327 QLALTHLNGVKL-FGKPLRVCPSKQ 350 (481)
T ss_pred HHHHHHhCCCEE-CCceEEEEEccc
Confidence 999999999999 899999998854
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.83 E-value=1.3e-20 Score=172.03 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=129.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCCCC---CCccccc---cCCCCCCcccccccchhhhhhh-hccCC--CcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTKS---PKPLKLE---KAQNPSALHLSLLSLSYFRQFS-ASFDG--FQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~p---~~~~~l~---~~~~s~gf~fv~~~~~~~a~~a-~~~~~--~~~~~~~~~~~ 85 (222)
..||.||++.+ +.+.|...|...- .+.+... ...+++||+||+|.++++|..| ..+.. ..+.++.+.+.
T Consensus 140 rLFVgNLP~~~--TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 140 RLFVGGIPKNK--KREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred eeEeecCCcch--hhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 46899999997 8888888876521 1111111 1257899999999999999888 34432 23445544433
Q ss_pred chhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHcc--CCeeEEEEeecCCCCCcccEEEEEECC
Q 027505 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA--GTVASAEIVYDRVTDRSRGFGFVTMGS 163 (222)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~--G~i~~~~l~~d~~tg~~rG~aFV~f~~ 163 (222)
......+ .........++|||+||++++++++|+++|++| |.|++|.++ ++||||+|.+
T Consensus 218 wA~p~~~-----------~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s 278 (578)
T TIGR01648 218 WAEPEEE-----------VDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFED 278 (578)
T ss_pred eeccccc-----------ccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCC
Confidence 2221110 011122345789999999999999999999999 999998765 4699999999
Q ss_pred HHHHHHHHHHhCCCeecCCcEEEEEEeccCCCCCC-------------------------CCCceeEEecCCcCccc
Q 027505 164 VEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHF-------------------------GNGRCLVFLSYIILDVH 215 (222)
Q Consensus 164 ~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~~~~~~-------------------------~~~r~~l~vgnl~~~v~ 215 (222)
.++|++|++.||+..| +|+.|+|.|++|...... ......+++||++|+..
T Consensus 279 ~e~A~kAi~~lnG~~i-~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~ 354 (578)
T TIGR01648 279 REDAVKAMDELNGKEL-EGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPP 354 (578)
T ss_pred HHHHHHHHHHhCCCEE-CCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCcccccccccccccccc
Confidence 9999999999999999 999999999998654311 01235789999999754
No 15
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=9.8e-20 Score=139.75 Aligned_cols=85 Identities=33% Similarity=0.521 Sum_probs=80.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...++|||+|||+++++++|+++|.+||.|.++.|+.|+.+++++|||||+|.+.++|++|++.|++..| +|+.|+|.+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i-~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL-NGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE-CCEEEEEEe
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred eccCCC
Q 027505 190 IEPFNC 195 (222)
Q Consensus 190 a~~~~~ 195 (222)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 977653
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.2e-20 Score=153.53 Aligned_cols=170 Identities=14% Similarity=0.167 Sum_probs=133.9
Q ss_pred hhcccceeeecCCCCCCCCCCCC-C---CCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhh
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-K---SPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~---p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~ 90 (222)
+||..|+-.- ..+.|++.|.+ . ..+-++-....+|+|||||-|...++|+.| ..++|.=+..+.++-.-.-+.
T Consensus 65 vfvgdls~eI--~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 65 VFVGDLSPEI--DNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred EEehhcchhc--chHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 4566676664 77778888854 2 234444444489999999999999999999 999999999888776544433
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
..+...+...-++.-.....+.++|||||++..++|+++++.|+.||+|.+|++-+++ ||+||.|.+.+.|..|
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHA 216 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHH
Confidence 3222222222233444567788999999999999999999999999999999998874 9999999999999999
Q ss_pred HHHhCCCeecCCcEEEEEEeccCC
Q 027505 171 IRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 171 l~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
|..||+.++ +|..+++.|-+...
T Consensus 217 Iv~mNntei-~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 217 IVQMNNTEI-GGQLVRCSWGKEGD 239 (321)
T ss_pred HHHhcCcee-CceEEEEeccccCC
Confidence 999999999 99999999987633
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.81 E-value=1.4e-19 Score=165.66 Aligned_cols=108 Identities=19% Similarity=0.341 Sum_probs=92.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|.+||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.|||..+ +||.|+|.
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i-~GR~IkV~ 182 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML-GGRNIKVG 182 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE-ecceeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred EeccCCCC--------CCCCCceeEEecCCcCccccc
Q 027505 189 LIEPFNCQ--------HFGNGRCLVFLSYIILDVHSI 217 (222)
Q Consensus 189 ~a~~~~~~--------~~~~~r~~l~vgnl~~~v~~~ 217 (222)
+....... .......+||||||++++.+-
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vtee 219 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSET 219 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHH
Confidence 65432210 111234689999999998754
No 18
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=8.4e-20 Score=155.00 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=137.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCCC----CCCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTK----SPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~----p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 90 (222)
.-||..|+|.| +++.|+.+|..- ...-++-...++++||+||.|.+++.+..+.....+.++++..+...+-.+
T Consensus 8 KlfiGgisw~t--tee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r 85 (311)
T KOG4205|consen 8 KLFIGGLSWET--TEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSR 85 (311)
T ss_pred ceeecCcCccc--cHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCc
Confidence 45899999999 999999999551 222233333379999999999999999999999999999998877544332
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
... ..........+|||++||.++++++++++|.+||.|..+.+++|..+.++|||+||.|.+++.+.++
T Consensus 86 ~~~----------~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 86 EDQ----------TKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ccc----------cccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 221 1122222567999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeecCCcEEEEEEeccCCC
Q 027505 171 IRLFDGSVSADGICIAIVLIEPFNC 195 (222)
Q Consensus 171 l~~l~g~~~~~gr~i~v~~a~~~~~ 195 (222)
+. .....| +|+.+.|..|.|+..
T Consensus 156 ~~-~~f~~~-~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 156 TL-QKFHDF-NGKKVEVKRAIPKEV 178 (311)
T ss_pred cc-cceeee-cCceeeEeeccchhh
Confidence 88 466677 899999999998663
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=4.9e-19 Score=149.52 Aligned_cols=169 Identities=10% Similarity=0.145 Sum_probs=138.1
Q ss_pred hhhcccceeeecCCCCCCCCCC-CCCCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLF-KTKSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f-~~~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~ 89 (222)
.++|..++|.. -+..++..| +..|+|++++.|+ +..+||+||+|.-++.++.+ .+++|..+.++.+.+.....
T Consensus 115 RvYVGSIsfEl--~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 115 RVYVGSISFEL--REDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred heeeeeeEEEe--chHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 35678899996 777788888 4489999999998 89999999999999999999 78899999999877654322
Q ss_pred hhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
-.+.+.--.. ...+...-++|||..+.++.+++||+.+|+.||+|.+|.+.+++.++.+|||||++|.+..+...
T Consensus 193 mpQAQpiID~-----vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 193 MPQAQPIIDM-----VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CcccchHHHH-----HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 1111100000 00111245789999999999999999999999999999999999778899999999999999999
Q ss_pred HHHHhCCCeecCCcEEEEEEec
Q 027505 170 AIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 170 Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
|+..||-+.+ +|..|+|-.+-
T Consensus 268 AiasMNlFDL-GGQyLRVGk~v 288 (544)
T KOG0124|consen 268 AIASMNLFDL-GGQYLRVGKCV 288 (544)
T ss_pred Hhhhcchhhc-ccceEeccccc
Confidence 9999999999 99999997653
No 20
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.77 E-value=7.2e-19 Score=159.55 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=123.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhhhc---cCCCcccCCCCCCcchhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSAS---FDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~---~~~~~~~~~~~~~~~~~~~ 90 (222)
..||.||++.+ +++.|...|.. .++..+.+. +++|||||+|.+.++|+.|.. .++..+.++...+......
T Consensus 4 vv~V~nLp~~~--te~~L~~~f~~fG~V~~v~i~---~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 4 VVHVRNLPQDV--VEADLVEALIPFGPVSYVMML---PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred EEEEcCCCCCC--CHHHHHHHHHhcCCeeEEEEE---CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 46899999998 99999999854 565555444 467999999999999999843 4677888887665443221
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
...... . ............+|||+||++.+++++|+++|+.||.|.+|.+.++. + +|+|||+|.+.++|.+|
T Consensus 79 ~~~~~~--~--~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~--~--~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 79 EIKRDG--N--SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN--N--VFQALVEFESVNSAQHA 150 (481)
T ss_pred ccccCC--C--CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC--C--ceEEEEEECCHHHHHHH
Confidence 100000 0 00001111233479999999999999999999999999999988764 2 47999999999999999
Q ss_pred HHHhCCCeecCC-cEEEEEEecc
Q 027505 171 IRLFDGSVSADG-ICIAIVLIEP 192 (222)
Q Consensus 171 l~~l~g~~~~~g-r~i~v~~a~~ 192 (222)
++.|||..|.+| +.|+|+|+++
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecC
Confidence 999999999433 5899999876
No 21
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=4.6e-18 Score=140.18 Aligned_cols=91 Identities=26% Similarity=0.381 Sum_probs=84.3
Q ss_pred ccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc
Q 027505 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI 183 (222)
Q Consensus 104 ~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr 183 (222)
.+....++.++|||+.|+++++|..|+..|..||+|+.|+|++|+.||+++|||||+|+++.++..|.+..+|..| +|+
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I-dgr 171 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI-DGR 171 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee-cCc
Confidence 3445567889999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEEeccCCC
Q 027505 184 CIAIVLIEPFNC 195 (222)
Q Consensus 184 ~i~v~~a~~~~~ 195 (222)
.|.|++...+..
T Consensus 172 ri~VDvERgRTv 183 (335)
T KOG0113|consen 172 RILVDVERGRTV 183 (335)
T ss_pred EEEEEecccccc
Confidence 999999876553
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=4.9e-18 Score=146.53 Aligned_cols=94 Identities=22% Similarity=0.415 Sum_probs=88.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
..++.||||.||.++.|++|.-+|++.|+|-+++|++|+.+|.+||||||+|.+.+.|++|++.||+++|-.|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred eccCCCCCCCCCceeEEecCCcC
Q 027505 190 IEPFNCQHFGNGRCLVFLSYIIL 212 (222)
Q Consensus 190 a~~~~~~~~~~~r~~l~vgnl~~ 212 (222)
+..+. .|||||||=
T Consensus 161 Svan~---------RLFiG~IPK 174 (506)
T KOG0117|consen 161 SVANC---------RLFIGNIPK 174 (506)
T ss_pred eeecc---------eeEeccCCc
Confidence 87733 599999984
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=5e-19 Score=152.02 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=131.0
Q ss_pred cchhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccC-CCcccCCCCCC
Q 027505 11 SSSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFD-GFQVTEDSQDE 84 (222)
Q Consensus 11 ~~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~-~~~~~~~~~~~ 84 (222)
.+.+--||..++-+- ++..|+.+|+. .....+++..+ +-++|++||.|.+.++++.+ .++. -..+.+....+
T Consensus 32 ~~~vKlfVgqIprt~--sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTA--SEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred chhhhheeccCCccc--cHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 344556788888875 88889999955 44455555554 78999999999999999988 5553 34455544333
Q ss_pred --cchhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEEC
Q 027505 85 --PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162 (222)
Q Consensus 85 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~ 162 (222)
...+.+.++ ..+.++||||-|+..++|.+++++|++||.|++|.|.+|. .+.+||||||.|.
T Consensus 110 qvk~Ad~E~er---------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fs 173 (510)
T KOG0144|consen 110 QVKYADGERER---------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFS 173 (510)
T ss_pred eecccchhhhc---------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEe
Confidence 222221111 1345689999999999999999999999999999999998 8999999999999
Q ss_pred CHHHHHHHHHHhCCCeecCCc--EEEEEEeccCCCC
Q 027505 163 SVEEAKEAIRLFDGSVSADGI--CIAIVLIEPFNCQ 196 (222)
Q Consensus 163 ~~~~a~~Al~~l~g~~~~~gr--~i~v~~a~~~~~~ 196 (222)
+.+.|..|++.|||..-..|. +|.|.||.+++++
T Consensus 174 tke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 174 TKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred hHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 999999999999998765665 8999999987754
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3.4e-18 Score=150.62 Aligned_cols=175 Identities=24% Similarity=0.299 Sum_probs=124.3
Q ss_pred cccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhh----
Q 027505 18 LYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQ---- 89 (222)
Q Consensus 18 ~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~---- 89 (222)
|-||+|++ ..+.|...|.. .-.-.+.++.. +.-.|||||.|....++..+ ..++++.++++++.+...-.
T Consensus 122 IRNLPf~~--k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 122 IRNLPFKC--KKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred eecCCccc--CcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 67999998 66688888865 11122222222 45559999999999999888 77888888888554321100
Q ss_pred ---------------hhhHHHH--------------------hh--------------hhcc--cc--------------
Q 027505 90 ---------------EEEEEEE--------------------AV--------------EEEE--EP-------------- 104 (222)
Q Consensus 90 ---------------~~~~~~~--------------------~~--------------~~~~--~~-------------- 104 (222)
..+..++ .+ ++++ ..
T Consensus 200 e~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~ 279 (678)
T KOG0127|consen 200 EDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKK 279 (678)
T ss_pred cccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccch
Confidence 0000000 00 0000 00
Q ss_pred -----cccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh-----
Q 027505 105 -----KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF----- 174 (222)
Q Consensus 105 -----~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l----- 174 (222)
.......+.+|||+|||+++++++|.++|++||+|..+.|+.++.||+++|.|||.|.+...+.+||...
T Consensus 280 ~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e 359 (678)
T KOG0127|consen 280 AQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASE 359 (678)
T ss_pred hccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCC
Confidence 0111222479999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCeecCCcEEEEEEeccCC
Q 027505 175 DGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 175 ~g~~~~~gr~i~v~~a~~~~ 194 (222)
.|..+++||.|.|..|-++.
T Consensus 360 ~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 360 DGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred CceEEEeccEEeeeeccchH
Confidence 34344599999999997654
No 25
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=5e-18 Score=136.01 Aligned_cols=77 Identities=29% Similarity=0.472 Sum_probs=70.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
-++||||||+|++..++|+++|++||+|.+..++.|+.+|++||||||+|.+.++|.+||+. -..+++||+-.|.+|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d--p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD--PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC--CCCcccccccccchh
Confidence 46899999999999999999999999999999999999999999999999999999999994 333449999988876
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.73 E-value=3.9e-17 Score=147.17 Aligned_cols=106 Identities=18% Similarity=0.268 Sum_probs=91.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+.+++++|+++|++||.|..|.|+.|+.+|+++|||||+|.+.++|.+|+. |+|..+ .|++|.|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~-~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQML-LGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE-CCeeeEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999998 899999 89999998
Q ss_pred EeccCCCCC---------CCCCceeEEecCCcCcccc
Q 027505 189 LIEPFNCQH---------FGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 189 ~a~~~~~~~---------~~~~r~~l~vgnl~~~v~~ 216 (222)
++....... ......+||||||+++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te 200 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITE 200 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCH
Confidence 875432110 1122578999999998765
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.6e-17 Score=143.43 Aligned_cols=169 Identities=24% Similarity=0.284 Sum_probs=126.2
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccC-CCCCCc----
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTE-DSQDEP---- 85 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~-~~~~~~---- 85 (222)
+||.-|+-+- .+..|..+|.. .++-.++|+-. +.++||+||+|.+.+.|+.| ..++.+++.. +.+.+-
T Consensus 86 VfvGkIPrD~--~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 86 VFVGKIPRDV--FEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred EEecCCCccc--cchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 5677788775 78889999966 57777777665 99999999999999999988 8888887643 211110
Q ss_pred ----------chhhhhhHHHH--hh-----------------------------------h-------------------
Q 027505 86 ----------ETEQEEEEEEE--AV-----------------------------------E------------------- 99 (222)
Q Consensus 86 ----------~~~~~~~~~~~--~~-----------------------------------~------------------- 99 (222)
....+++-.++ +. .
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVd 243 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVD 243 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceee
Confidence 00111110000 00 0
Q ss_pred ---hcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC
Q 027505 100 ---EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176 (222)
Q Consensus 100 ---~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g 176 (222)
.+.++.......-+.|||+||+.++|++.|+++|++||.|..|+.++| ||||.|.++++|-+|++.|||
T Consensus 244 WAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ng 315 (506)
T KOG0117|consen 244 WAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNG 315 (506)
T ss_pred ccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcC
Confidence 011112222333468999999999999999999999999999988765 999999999999999999999
Q ss_pred CeecCCcEEEEEEeccCCC
Q 027505 177 SVSADGICIAIVLIEPFNC 195 (222)
Q Consensus 177 ~~~~~gr~i~v~~a~~~~~ 195 (222)
++| +|..|.|.+|+|...
T Consensus 316 kel-dG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 316 KEL-DGSPIEVTLAKPVDK 333 (506)
T ss_pred cee-cCceEEEEecCChhh
Confidence 999 999999999999654
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.72 E-value=4.8e-18 Score=154.91 Aligned_cols=175 Identities=11% Similarity=0.099 Sum_probs=126.6
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~ 89 (222)
..||.||++.+ +++.|...|.. .++..+++... +.++|||||+|.+.+.+..| ..++|..+.+....+.....
T Consensus 297 ~l~v~nlp~~~--~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 297 RIYIGNLPLYL--GEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 57899999998 88899888854 45555555432 78999999999999999998 67899999887654433211
Q ss_pred hhhHHHHhhh------------hcccccccCCCCCCEEEEcCCCCC--C--------CHHHHHHHHHccCCeeEEEEeec
Q 027505 90 EEEEEEEAVE------------EEEEPKVAASDEAARLYVGNLPYS--M--------TSSSLAEVFAEAGTVASAEIVYD 147 (222)
Q Consensus 90 ~~~~~~~~~~------------~~~~~~~~~~~~~~~ifV~nLp~~--~--------t~~~L~~~F~~~G~i~~~~l~~d 147 (222)
.......... ...............|++.|+... + ..++|+++|++||.|..|.|+++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~ 454 (509)
T TIGR01642 375 GANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRP 454 (509)
T ss_pred CCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeecc
Confidence 1100000000 000000111234678999999642 1 23678999999999999999875
Q ss_pred C---CCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 148 R---VTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 148 ~---~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
. .++.++|++||+|.+.++|++|+..|||..+ +||.|.|.+...
T Consensus 455 ~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~-~gr~v~~~~~~~ 501 (509)
T TIGR01642 455 NGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKF-NDRVVVAAFYGE 501 (509)
T ss_pred CcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEEEeCH
Confidence 3 3456789999999999999999999999999 999999998754
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=3.6e-18 Score=138.63 Aligned_cols=159 Identities=25% Similarity=0.364 Sum_probs=132.8
Q ss_pred hhhccc-ceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 15 CNKLYN-LQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~n-lsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
+|.|-| |+=. .|++.++++|.+ ..+.+.+|..+ +.|-|||||.|-.+.+|.+| ..++|-.+..+.+.+....
T Consensus 42 TNLIvNYLPQ~--MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 42 TNLIVNYLPQN--MTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ceeeeeecccc--cCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 455555 3333 488899999977 46777777776 99999999999999999999 8899999988887765543
Q ss_pred hhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHH
Q 027505 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~ 168 (222)
... +...+..+||.+||...|..+|+++|++||.|..-+|..|..+|-+||.|||.|..+.+|+
T Consensus 120 PSs----------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe 183 (360)
T KOG0145|consen 120 PSS----------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAE 183 (360)
T ss_pred CCh----------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHH
Confidence 222 1224567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeecCCc--EEEEEEecc
Q 027505 169 EAIRLFDGSVSADGI--CIAIVLIEP 192 (222)
Q Consensus 169 ~Al~~l~g~~~~~gr--~i~v~~a~~ 192 (222)
.||+.|||..- .|. +|.|.+|..
T Consensus 184 ~AIk~lNG~~P-~g~tepItVKFann 208 (360)
T KOG0145|consen 184 EAIKGLNGQKP-SGCTEPITVKFANN 208 (360)
T ss_pred HHHHhccCCCC-CCCCCCeEEEecCC
Confidence 99999999977 454 789998843
No 30
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=7.1e-17 Score=107.90 Aligned_cols=70 Identities=33% Similarity=0.622 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 115 ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
|||+|||+++++++|+++|++||.|..+.+..+ .+++.+|||||+|.+.++|++|++.|+|..+ +|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~-~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI-NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE-TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE-CccCcC
Confidence 799999999999999999999999999999998 4899999999999999999999999999999 899875
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4e-17 Score=133.09 Aligned_cols=100 Identities=25% Similarity=0.381 Sum_probs=90.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
..-+||+.|..+++-++|++.|.+||+|.++++++|..|+|+||||||.|.+.++|++||..|||.-| ++|.|+-.||.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl-G~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL-GRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee-ccceeeccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999 99999999997
Q ss_pred cCCCCC-------------CCCCceeEEecCCcC
Q 027505 192 PFNCQH-------------FGNGRCLVFLSYIIL 212 (222)
Q Consensus 192 ~~~~~~-------------~~~~r~~l~vgnl~~ 212 (222)
.++... .....++||+|||+-
T Consensus 141 RKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~ 174 (321)
T KOG0148|consen 141 RKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIAS 174 (321)
T ss_pred cCccccCCCCccHHHHhccCCCCCceEEeCCcCc
Confidence 765321 233678999999876
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.70 E-value=3.3e-17 Score=126.59 Aligned_cols=104 Identities=28% Similarity=0.398 Sum_probs=91.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
...+.+|||+||+..++++-|.++|-+.|+|..+.+++|+.+..++||||++|.++++|+-|++.||...+ .||+|+|.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL-YgrpIrv~ 84 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL-YGRPIRVN 84 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh-cCceeEEE
Confidence 44577999999999999999999999999999999999999999999999999999999999999998888 89999999
Q ss_pred EeccCCCCCCCCCceeEEecCCcCccc
Q 027505 189 LIEPFNCQHFGNGRCLVFLSYIILDVH 215 (222)
Q Consensus 189 ~a~~~~~~~~~~~r~~l~vgnl~~~v~ 215 (222)
.+...... -.....||||||..+|-
T Consensus 85 kas~~~~n--l~vganlfvgNLd~~vD 109 (203)
T KOG0131|consen 85 KASAHQKN--LDVGANLFVGNLDPEVD 109 (203)
T ss_pred eccccccc--ccccccccccccCcchh
Confidence 88732221 22237799999998764
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.69 E-value=6.3e-18 Score=130.57 Aligned_cols=165 Identities=19% Similarity=0.223 Sum_probs=128.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~ 89 (222)
+.||.||.-.- +++-|-++|-. .|.-.+..+.. ...+||||++|.+.++++++ .-++...+-++++.+.....
T Consensus 11 tiyvgnld~kv--s~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 11 TLYVGNLDEKV--SEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred eEEEecCCHHH--HHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 56777777664 54455666633 34332333322 46899999999999999999 77788888888876643331
Q ss_pred hhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeE-EEEeecCCCCCcccEEEEEECCHHHHH
Q 027505 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYDRVTDRSRGFGFVTMGSVEEAK 168 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~-~~l~~d~~tg~~rG~aFV~f~~~~~a~ 168 (222)
. ....+.+.++||+||.+.+.+..|.+.|+.||.+.. -.++++..||+++|||||.|.+.+.+.
T Consensus 89 ~---------------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 89 H---------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred c---------------cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 1 112234578999999999999999999999999755 588999999999999999999999999
Q ss_pred HHHHHhCCCeecCCcEEEEEEeccCCCCC
Q 027505 169 EAIRLFDGSVSADGICIAIVLIEPFNCQH 197 (222)
Q Consensus 169 ~Al~~l~g~~~~~gr~i~v~~a~~~~~~~ 197 (222)
+|+..|||..+ ..|+|.|.++..+..+.
T Consensus 154 ~ai~s~ngq~l-~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 154 AAIGSMNGQYL-CNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHhccchh-cCCceEEEEEEecCCCc
Confidence 99999999999 89999999998766543
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.68 E-value=3e-17 Score=144.92 Aligned_cols=173 Identities=19% Similarity=0.302 Sum_probs=136.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 90 (222)
++|...|+-.+ ++..|.+.|.. .+..++.+... ++++|.+||+|.+...++.+..+.|.-+-+.+..+...+.+
T Consensus 181 tvf~~qla~r~--~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 181 TVFCMQLARRN--PPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHHhhcC--CchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHH
Confidence 56777777665 78888888855 35455555444 88999999999999999999999999998888777655555
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
.... ......- ....-..+...+|||||.+.+++++|+..|+.||.|..|.+++|..+|.++|||||+|.+.+.|++|
T Consensus 259 knr~-a~~s~a~-~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 259 KNRA-ANASPAL-QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred HHHH-Hhccccc-cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 4441 1111111 1111122333499999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeecCCcEEEEEEecc
Q 027505 171 IRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 171 l~~l~g~~~~~gr~i~v~~a~~ 192 (222)
++.|||.+| -||.|+|.....
T Consensus 337 ~e~lngfel-AGr~ikV~~v~~ 357 (549)
T KOG0147|consen 337 LEQLNGFEL-AGRLIKVSVVTE 357 (549)
T ss_pred HHHhcccee-cCceEEEEEeee
Confidence 999999888 899999876543
No 35
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.6e-16 Score=126.75 Aligned_cols=85 Identities=31% Similarity=0.449 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
..+.++|-|.||+.++++.+|+++|.+||.|..+.|.+|+.||.+||||||.|.++++|.+||..|||.-+ +.-.|+|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy-d~LILrvE 264 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY-DNLILRVE 264 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc-ceEEEEEE
Confidence 34678899999999999999999999999999999999999999999999999999999999999999998 78889999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
|++|++
T Consensus 265 wskP~~ 270 (270)
T KOG0122|consen 265 WSKPSN 270 (270)
T ss_pred ecCCCC
Confidence 999963
No 36
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=4.9e-16 Score=113.73 Aligned_cols=81 Identities=28% Similarity=0.443 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+||++.++|++|.++|+++|.|..|.|-.|+.+..+.|||||+|.+.++|+.|++-++|+.+ +.|+|.++|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL-ddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL-DDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc-cccceeeecc
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred cc
Q 027505 191 EP 192 (222)
Q Consensus 191 ~~ 192 (222)
-.
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 55
No 37
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=5.5e-16 Score=129.47 Aligned_cols=84 Identities=31% Similarity=0.534 Sum_probs=77.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
...+..++|+|+|||+...|.||+.+|.+||+|.+|+|+.+ ...+||||||+|++.++|++|-++|||+.+ .||+|.
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~V-EGRkIE 167 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVV-EGRKIE 167 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhccee-eceEEE
Confidence 34556789999999999999999999999999999999997 466899999999999999999999999999 999999
Q ss_pred EEEeccC
Q 027505 187 IVLIEPF 193 (222)
Q Consensus 187 v~~a~~~ 193 (222)
|..|.++
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9998764
No 38
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=4.5e-16 Score=136.13 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=130.0
Q ss_pred eeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhhHHHHhhhh
Q 027505 23 AITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEEEEEEAVEE 100 (222)
Q Consensus 23 f~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (222)
.++ ++..|...|.. .|.-++++-.+..|-|||||.|.+++++..| ..++-..+.+++...-..++..
T Consensus 8 ~~v--~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~--------- 76 (369)
T KOG0123|consen 8 PDV--TEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP--------- 76 (369)
T ss_pred CcC--ChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC---------
Confidence 444 77778888855 4545554433323999999999999999999 7778888888776653332211
Q ss_pred cccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeec
Q 027505 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSA 180 (222)
Q Consensus 101 ~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~ 180 (222)
..|||.||+++++..+|.++|+.||+|.+|++..+. .| ++|| ||+|.++++|++|++.|||..+
T Consensus 77 ------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll- 140 (369)
T KOG0123|consen 77 ------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLL- 140 (369)
T ss_pred ------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCccc-
Confidence 119999999999999999999999999999999997 55 9999 9999999999999999999999
Q ss_pred CCcEEEEEEeccCCCCC-----CCCCceeEEecCCcCcccc
Q 027505 181 DGICIAIVLIEPFNCQH-----FGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 181 ~gr~i~v~~a~~~~~~~-----~~~~r~~l~vgnl~~~v~~ 216 (222)
.|++|-|....++..+. ...--+.+|+.|++.++..
T Consensus 141 ~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~ 181 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTD 181 (369)
T ss_pred CCCeeEEeeccchhhhcccccchhhhhhhhheeccccccch
Confidence 89999998876644321 1223466888888865443
No 39
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=2.1e-15 Score=101.27 Aligned_cols=70 Identities=36% Similarity=0.620 Sum_probs=64.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 115 ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
|||+|||+++++++|+++|+.||.|..+.+..++. |..+|+|||+|.+.++|.+|++.+++..+ +|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~-~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEI-DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEE-TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEE-CCEEcC
Confidence 79999999999999999999999999999999985 99999999999999999999999988998 899874
No 40
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.7e-15 Score=116.50 Aligned_cols=82 Identities=27% Similarity=0.402 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...++|||+||+..+++.+|+..|..||+|..+.|...+ .|||||+|++..+|+.|+..|+|..| .|..|.|++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~-cG~r~rVE~ 81 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDI-CGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccc-cCceEEEEe
Confidence 346899999999999999999999999999999997754 79999999999999999999999999 799999999
Q ss_pred eccCCCCC
Q 027505 190 IEPFNCQH 197 (222)
Q Consensus 190 a~~~~~~~ 197 (222)
+.......
T Consensus 82 S~G~~r~~ 89 (195)
T KOG0107|consen 82 STGRPRGS 89 (195)
T ss_pred ecCCcccc
Confidence 98766533
No 41
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2.6e-15 Score=123.79 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=70.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+.+++++|+++|+.||.|.+|+|++++ ..+|||||+|.++++|+.|+. |+|..| +||.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l-~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATI-VDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCee-CCceEEEEecc
Confidence 5789999999999999999999999999999999875 357999999999999999996 999999 89999999987
Q ss_pred c
Q 027505 192 P 192 (222)
Q Consensus 192 ~ 192 (222)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 4
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=3.3e-15 Score=121.51 Aligned_cols=101 Identities=25% Similarity=0.397 Sum_probs=91.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
....+.|.-||...|+++++.+|...|+|++|++++|+.+|.+.|||||.|.++++|++|+..|||-.+ ..+.|+|.+|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL-Q~KTIKVSyA 118 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL-QNKTIKVSYA 118 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee-ccceEEEEec
Confidence 345788999999999999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ccCCCCCCCCCceeEEecCCcCccc
Q 027505 191 EPFNCQHFGNGRCLVFLSYIILDVH 215 (222)
Q Consensus 191 ~~~~~~~~~~~r~~l~vgnl~~~v~ 215 (222)
+|....-.+.+ |||+.||--++
T Consensus 119 RPSs~~Ik~aN---LYvSGlPktMt 140 (360)
T KOG0145|consen 119 RPSSDSIKDAN---LYVSGLPKTMT 140 (360)
T ss_pred cCChhhhcccc---eEEecCCccch
Confidence 99776544444 99999986543
No 43
>PLN03213 repressor of silencing 3; Provisional
Probab=99.61 E-value=3.2e-15 Score=130.83 Aligned_cols=77 Identities=23% Similarity=0.394 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCH--HHHHHHHHHhCCCeecCCcEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV--EEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~--~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
...+||||||++.+++++|+.+|..||.|.++.|++. +| ||||||+|.+. .++.+||..|||..+ .||.|+|.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEW-KGR~LKVN 83 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW-KGGRLRLE 83 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCee-cCceeEEe
Confidence 4578999999999999999999999999999999954 67 99999999987 789999999999999 89999999
Q ss_pred Eecc
Q 027505 189 LIEP 192 (222)
Q Consensus 189 ~a~~ 192 (222)
.|+|
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 9987
No 44
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.8e-15 Score=132.32 Aligned_cols=175 Identities=23% Similarity=0.327 Sum_probs=137.5
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhh
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEE 91 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~ 91 (222)
.++.|+.+++ ++..|...|.. .++....+... +.++|||||.|..++++..+ ..+++...++...-+...+...
T Consensus 170 v~vk~~~~~~--~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 170 VYVKNLEEDS--TDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred hheecccccc--chHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccch
Confidence 4678888776 88888888866 56677776665 77899999999999999988 8888888876655443333322
Q ss_pred hHHHH--hhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 92 EEEEE--AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 92 ~~~~~--~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
+.... ..-...............|||.||+..++.+.|+..|+.||.|.+++|+.+. .|+++|||||+|.+.++|.+
T Consensus 248 e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~ 326 (369)
T KOG0123|consen 248 EREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKK 326 (369)
T ss_pred hhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHH
Confidence 21111 1111122223335567789999999999999999999999999999999987 89999999999999999999
Q ss_pred HHHHhCCCeecCCcEEEEEEeccCC
Q 027505 170 AIRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 170 Al~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
|+..+|+..+ +++.|.|.++....
T Consensus 327 A~~~~n~~~i-~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 327 AMTEMNGRLI-GGKPLYVAVAQRKE 350 (369)
T ss_pred HHHhhChhhh-cCCchhhhHHhhhc
Confidence 9999999999 89999999887543
No 45
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1e-16 Score=123.93 Aligned_cols=79 Identities=25% Similarity=0.507 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+..-|||||||++.||.||.-+|++||+|..|.|++|+.||+++||||+.|++..+.--|+..|||..| .||.|+|+-.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki-~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI-LGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee-cceeEEeeec
Confidence 345799999999999999999999999999999999999999999999999999999999999999999 8999999854
No 46
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.59 E-value=2.5e-15 Score=118.44 Aligned_cols=83 Identities=33% Similarity=0.515 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
+...-..|-|.||-+.++.++|+.+|++||.|-+|.|++|+.|+.++|||||-|.+..+|+.|++.|+|..+ +|+.|.|
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l-dgRelrV 87 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL-DGRELRV 87 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee-ccceeee
Confidence 344567899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEec
Q 027505 188 VLIE 191 (222)
Q Consensus 188 ~~a~ 191 (222)
++|+
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 8873
No 47
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.7e-15 Score=119.32 Aligned_cols=83 Identities=31% Similarity=0.461 Sum_probs=79.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++||||+|..++++.-|...|-.||.|.+|.++.|..++++||||||+|.-.++|.+|+..||+.++ .||.|+|.+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL-~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL-FGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh-cceeEEEeec
Confidence 457899999999999999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ccCC
Q 027505 191 EPFN 194 (222)
Q Consensus 191 ~~~~ 194 (222)
+|..
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 9955
No 48
>smart00362 RRM_2 RNA recognition motif.
Probab=99.55 E-value=5e-14 Score=93.30 Aligned_cols=71 Identities=37% Similarity=0.636 Sum_probs=66.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 114 ~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
+|||+|||..+++++|+++|.+||.|..+.+..++ +.++|+|||+|.+.++|++|++.+++..+ +|++|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~-~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL-GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE-CCEEEee
Confidence 48999999999999999999999999999998876 78899999999999999999999999998 8998876
No 49
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.54 E-value=1.8e-14 Score=127.60 Aligned_cols=81 Identities=32% Similarity=0.589 Sum_probs=78.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
+.|||||+|+++++++|..+|+..|.|.+++++.|+.+|+.+||||++|.+.++++.|++.|||.++ +||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~-~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF-NGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc-CCceEEeecccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 999999999866
Q ss_pred CC
Q 027505 193 FN 194 (222)
Q Consensus 193 ~~ 194 (222)
.+
T Consensus 98 ~~ 99 (435)
T KOG0108|consen 98 RK 99 (435)
T ss_pred cc
Confidence 44
No 50
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=5.3e-14 Score=114.47 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|++| ++.+|||||+|.++++++.|+. |+|..| .+++|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l-~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATI-VDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCee-CCceEEEEeC
Confidence 4679999999999999999999999999999999987 4556899999999999999996 999999 7999999865
Q ss_pred c
Q 027505 191 E 191 (222)
Q Consensus 191 ~ 191 (222)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 51
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=4.4e-14 Score=104.41 Aligned_cols=91 Identities=21% Similarity=0.284 Sum_probs=83.3
Q ss_pred ccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc
Q 027505 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI 183 (222)
Q Consensus 104 ~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr 183 (222)
+.+.....+..|||.++...++++++.+.|..||+|+.+.|..|+.||-.+|||.|+|++..+|++|+..+||..+ -|.
T Consensus 64 pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l-l~q 142 (170)
T KOG0130|consen 64 PGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL-LGQ 142 (170)
T ss_pred CCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh-hCC
Confidence 3445556788999999999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred EEEEEEeccCCC
Q 027505 184 CIAIVLIEPFNC 195 (222)
Q Consensus 184 ~i~v~~a~~~~~ 195 (222)
.|.|.|+.-+.+
T Consensus 143 ~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 143 NVSVDWCFVKGP 154 (170)
T ss_pred ceeEEEEEecCC
Confidence 999999966544
No 52
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.9e-14 Score=129.34 Aligned_cols=102 Identities=27% Similarity=0.435 Sum_probs=84.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCC---CcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD---RSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg---~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
++|||.||+++++.++|..+|..+|.|.++.|...+... -+.|||||+|.+.++|++|++.|+|+.+ +|+.|.|.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl-dGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL-DGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee-cCceEEEEe
Confidence 349999999999999999999999999999988766221 2449999999999999999999999999 999999999
Q ss_pred eccCCC------CCCCCCceeEEecCCcCccc
Q 027505 190 IEPFNC------QHFGNGRCLVFLSYIILDVH 215 (222)
Q Consensus 190 a~~~~~------~~~~~~r~~l~vgnl~~~v~ 215 (222)
+..++. ........+|.|.||||.++
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt 626 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEAT 626 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHH
Confidence 982221 11112246899999999864
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=5.2e-14 Score=116.14 Aligned_cols=79 Identities=38% Similarity=0.620 Sum_probs=76.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+++++++|+++|.+||.|..+.+..++.+|+++|||||+|.+.+++..|++.++|..+ .|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~-~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL-EGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE-CCceeEeeccc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999 89999999954
No 54
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=7.9e-14 Score=91.94 Aligned_cols=70 Identities=37% Similarity=0.639 Sum_probs=66.2
Q ss_pred EcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 117 VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 117 V~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
|+|||..+++++|+++|.+||.|..+.+..++.+++++|+|||+|.+.++|.+|+..+++..+ +|++|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~-~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL-DGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee-CCcEEEe
Confidence 689999999999999999999999999999887799999999999999999999999999998 8998876
No 55
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=97.79 Aligned_cols=82 Identities=27% Similarity=0.470 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
+....-+||+|||+.+|.++..++|++||.|..|+|-. +...+|-|||.|++..+|++|++.|+|..+ +++.+.|-
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~-~~ryl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNV-DNRYLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhccccc-CCceEEEE
Confidence 33466899999999999999999999999999999865 445789999999999999999999999999 89999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
+-.|..
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 877744
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.51 E-value=2.6e-14 Score=117.82 Aligned_cols=89 Identities=26% Similarity=0.441 Sum_probs=81.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
-++||||||..+++.+|+.+|++||+|.+|.|+++ ||||..++...++.|++.|+|+.| +|..|+|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL-hg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL-HGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee-cceEEEEEeccc
Confidence 36999999999999999999999999999999976 999999999999999999999999 999999998887
Q ss_pred CCCCCCCCCceeEEecCCcCccc
Q 027505 193 FNCQHFGNGRCLVFLSYIILDVH 215 (222)
Q Consensus 193 ~~~~~~~~~r~~l~vgnl~~~v~ 215 (222)
+.+ .+.+|+||||.+.-+
T Consensus 74 Ksk-----~stkl~vgNis~tct 91 (346)
T KOG0109|consen 74 KSK-----ASTKLHVGNISPTCT 91 (346)
T ss_pred cCC-----CccccccCCCCcccc
Confidence 643 567899999998655
No 57
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3.5e-14 Score=122.44 Aligned_cols=103 Identities=22% Similarity=0.353 Sum_probs=88.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCC--cEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADG--ICIAIV 188 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~g--r~i~v~ 188 (222)
+.-++||+.||..++|.||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|++...+.| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 345799999999999999999999999999999999999999999999999999999999999998866566 467888
Q ss_pred EeccCCCCCCCCCceeEEecCCcCccc
Q 027505 189 LIEPFNCQHFGNGRCLVFLSYIILDVH 215 (222)
Q Consensus 189 ~a~~~~~~~~~~~r~~l~vgnl~~~v~ 215 (222)
+|.....+. -..++||||-|+=+.+
T Consensus 113 ~Ad~E~er~--~~e~KLFvg~lsK~~t 137 (510)
T KOG0144|consen 113 YADGERERI--VEERKLFVGMLSKQCT 137 (510)
T ss_pred ccchhhhcc--ccchhhhhhhcccccc
Confidence 887755432 2346799999886654
No 58
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.48 E-value=6.8e-14 Score=119.06 Aligned_cols=107 Identities=26% Similarity=0.349 Sum_probs=93.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+.+++||++|+|+++++.|+++|.+||+|.+|.+++|+.++++|||+||+|.+.+.+.+++.. ....| +||.|.+..|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~-dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKL-DGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-ccccc-CCccccceec
Confidence 678999999999999999999999999999999999999999999999999999999998873 44455 8999999999
Q ss_pred ccCCCCCCCC---CceeEEecCCcCccccccc
Q 027505 191 EPFNCQHFGN---GRCLVFLSYIILDVHSIHS 219 (222)
Q Consensus 191 ~~~~~~~~~~---~r~~l~vgnl~~~v~~~~~ 219 (222)
.|+..+.... ...+||||.|+.+++..|.
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~ 114 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGGLPPDTTEEDF 114 (311)
T ss_pred cCcccccccccccceeEEEecCcCCCCchHHH
Confidence 8877533222 2569999999999988775
No 59
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.8e-13 Score=113.68 Aligned_cols=89 Identities=22% Similarity=0.335 Sum_probs=82.6
Q ss_pred ccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc
Q 027505 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI 183 (222)
Q Consensus 104 ~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr 183 (222)
+.....++.+.|||..|.+-+++++|.-+|+.||.|.+|.+++|..||.+..||||+|.+.+++++|.-+|++..| +.|
T Consensus 231 pdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI-DDr 309 (479)
T KOG0415|consen 231 PDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI-DDR 309 (479)
T ss_pred cccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee-ccc
Confidence 3445566789999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEEeccC
Q 027505 184 CIAIVLIEPF 193 (222)
Q Consensus 184 ~i~v~~a~~~ 193 (222)
+|.|.+++..
T Consensus 310 RIHVDFSQSV 319 (479)
T KOG0415|consen 310 RIHVDFSQSV 319 (479)
T ss_pred eEEeehhhhh
Confidence 9999988653
No 60
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.47 E-value=7.6e-13 Score=87.99 Aligned_cols=74 Identities=35% Similarity=0.625 Sum_probs=68.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 114 ~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
+|+|+|||+.+++++|+++|+.+|.|..+.+..++ .++++|+|||+|.+.++|..|+..+++..+ +|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~-~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKEL-GGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeE-CCeEEEEeC
Confidence 48999999999999999999999999999999877 447899999999999999999999999998 899998764
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=3.6e-14 Score=116.97 Aligned_cols=145 Identities=21% Similarity=0.261 Sum_probs=118.1
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhhH
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEEE 93 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (222)
-||.||+-.+ +...|+.+|.. .......+. +-||||-.++...+..+ ..++++.+.+..+.++....
T Consensus 5 LFIGNLp~~~--~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks---- 73 (346)
T KOG0109|consen 5 LFIGNLPREA--TEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS---- 73 (346)
T ss_pred hhccCCCccc--chHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccc----
Confidence 4799999998 88889999965 221222222 34899998888887777 77999999998776533221
Q ss_pred HHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHH
Q 027505 94 EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (222)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~ 173 (222)
+.....+++|+||.+.++..+|+..|.+||+|..|.|++| |+||.|.-.++|..|++.
T Consensus 74 --------------Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 74 --------------KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred --------------cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhc
Confidence 1335678999999999999999999999999999999864 999999999999999999
Q ss_pred hCCCeecCCcEEEEEEeccCC
Q 027505 174 FDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 174 l~g~~~~~gr~i~v~~a~~~~ 194 (222)
|++.++ .|+++.|+++..+-
T Consensus 132 l~~~~~-~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 132 LDNTEF-QGKRMHVQLSTSRL 151 (346)
T ss_pred cccccc-ccceeeeeeecccc
Confidence 999999 89999999986533
No 62
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=2.1e-13 Score=115.67 Aligned_cols=102 Identities=22% Similarity=0.423 Sum_probs=86.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
-++||||.|.+++.|+.|+..|..||+|++|.+..|+.|++++|||||+|+-++.|.-|++.|||..+ +||.|+|.+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml-GGRNiKVgr-- 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML-GGRNIKVGR-- 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc-cCccccccC--
Confidence 57899999999999999999999999999999999999999999999999999999999999999999 999998873
Q ss_pred cCCCCC----------CCCCceeEEecCCcCcccc
Q 027505 192 PFNCQH----------FGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 192 ~~~~~~----------~~~~r~~l~vgnl~~~v~~ 216 (222)
|.+... .-.....|||..++-|.-+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe 224 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSE 224 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccH
Confidence 322111 0123456999887766543
No 63
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.2e-12 Score=101.84 Aligned_cols=80 Identities=25% Similarity=0.386 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...++|||+|||.++.+.+|+++|.+||.|..|.|... -..-+||||+|++..+|+.||..-+|+.+ +|.+|+|++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdy-dg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDY-DGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhccccccc-CcceEEEEe
Confidence 35678999999999999999999999999999998543 33467999999999999999999999999 999999999
Q ss_pred eccC
Q 027505 190 IEPF 193 (222)
Q Consensus 190 a~~~ 193 (222)
+..-
T Consensus 80 prgg 83 (241)
T KOG0105|consen 80 PRGG 83 (241)
T ss_pred ccCC
Confidence 8653
No 64
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=2.3e-12 Score=86.78 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=55.1
Q ss_pred HHHHHHHHH----ccCCeeEEE-EeecCCC--CCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 126 SSSLAEVFA----EAGTVASAE-IVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 126 ~~~L~~~F~----~~G~i~~~~-l~~d~~t--g~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
+++|+++|+ +||.|.++. ++.++.+ ++++|||||+|.+.++|.+|++.|||..+ +||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~-~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF-DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE-CCEEEEe
Confidence 578888888 999999995 7777766 89999999999999999999999999999 8999876
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.37 E-value=1.9e-12 Score=112.06 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=83.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHH-ccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~-~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
..+.+||.|||++..+.+|+++|. +.|+|..|.|..|. +||+||||.|+|++++.+++|++.||.+.+ .||.|.|..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~-~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEV-NGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccc-cCceEEEec
Confidence 345699999999999999999997 47999999999997 999999999999999999999999999999 999999987
Q ss_pred eccCCCCCC---CCCceeEEecCCcCc
Q 027505 190 IEPFNCQHF---GNGRCLVFLSYIILD 213 (222)
Q Consensus 190 a~~~~~~~~---~~~r~~l~vgnl~~~ 213 (222)
.......++ .+.-...|++++.++
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q 147 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQ 147 (608)
T ss_pred cCchhhhhhhheeeccCcccccCccee
Confidence 655332111 112234677776654
No 66
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=9.1e-12 Score=80.00 Aligned_cols=56 Identities=32% Similarity=0.558 Sum_probs=50.6
Q ss_pred HHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 129 L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
|.++|++||.|..+.+..+. +|+|||+|.+.++|++|++.|||..+ +|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~-~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF-NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE-TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE-CCcEEEEEEC
Confidence 67899999999999987653 69999999999999999999999999 9999999986
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.29 E-value=1.2e-11 Score=97.64 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc-CCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~-G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...-+||+.+|....+.++..+|.++ |.+...++-+++.||.++|||||+|++++.|+-|.+.||++.+ .|+.|.|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl-~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL-MEHLLECHV 126 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh-hhheeeeEE
Confidence 45579999999999999999999998 7788999999999999999999999999999999999999999 899999998
Q ss_pred eccC
Q 027505 190 IEPF 193 (222)
Q Consensus 190 a~~~ 193 (222)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8775
No 68
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=4.3e-12 Score=103.83 Aligned_cols=88 Identities=26% Similarity=0.449 Sum_probs=83.2
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
.+..++|.|||-.||.+..+.+|...|-.||-|.+.++-.|+.|..+|+||||.|.++.+++.||..|||..| +-++|+
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI-GMKRLK 358 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI-GMKRLK 358 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhh-hhhhhh
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred EEEeccCCC
Q 027505 187 IVLIEPFNC 195 (222)
Q Consensus 187 v~~a~~~~~ 195 (222)
|.+.+|++.
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 999999764
No 69
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.27 E-value=2.9e-12 Score=112.32 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=134.1
Q ss_pred ccchhhhhcccceeeecCCCCCCCCCCCCCCCCccccccC-CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchh
Q 027505 10 ASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA-QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 10 ~~~~~~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 88 (222)
.+.+-.+.+-.|+|+. |.+.+..-|..+.+..+.+... ++..|=+||+|.+.+++.+|++.|...+..+.+++-...
T Consensus 7 ~~~~~~vr~rGLPwsa--t~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSA--TEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccc--cHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 3445556678899997 9999999998888887877777 999999999999999999999999998888887775554
Q ss_pred hhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeE-EEEeecCCCCCcccEEEEEECCHHHH
Q 027505 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYDRVTDRSRGFGFVTMGSVEEA 167 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~-~~l~~d~~tg~~rG~aFV~f~~~~~a 167 (222)
..+..+.-+ ...+........|-+++||+.++++||.++|+..--+.. +.++.++ .+++.|-|||.|++.+.|
T Consensus 85 ~~e~d~~~~-----~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 85 GAEADWVMR-----PGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESA 158 (510)
T ss_pred Ccccccccc-----CCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHH
Confidence 433322111 111122235678889999999999999999998754444 5677776 788999999999999999
Q ss_pred HHHHHHhCCCeecCCcEEEEEEe
Q 027505 168 KEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 168 ~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
++|+.. |...| +-|-|.|..+
T Consensus 159 e~Al~r-hre~i-GhRYIEvF~S 179 (510)
T KOG4211|consen 159 EIALGR-HRENI-GHRYIEVFRS 179 (510)
T ss_pred HHHHHH-HHHhh-ccceEEeehh
Confidence 999985 66667 7888888766
No 70
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.24 E-value=1.3e-11 Score=113.24 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=82.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++||||+|+..+++.||..+|+.||+|.+|.++-. ||||||.+....+|++|+.+|++..+ .++.|+|.|+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv-~~k~Iki~Wa 492 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKV-ADKTIKIAWA 492 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccc-cceeeEEeee
Confidence 3579999999999999999999999999999988654 79999999999999999999999999 8999999999
Q ss_pred ccCCCCC--CCCCceeEEecCCcCcc
Q 027505 191 EPFNCQH--FGNGRCLVFLSYIILDV 214 (222)
Q Consensus 191 ~~~~~~~--~~~~r~~l~vgnl~~~v 214 (222)
..+..+. ..-....+.|.+|||+-
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~k 518 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEK 518 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHh
Confidence 7765443 12233446677888864
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.24 E-value=3.6e-11 Score=96.34 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHH----HHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAE----VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~----~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
...+|||.||+..+..++|+. +|++||.|.+|.... +.+.||-|||.|.+.+.|-.|++.|+|..+ .|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpF-ygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPF-YGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcc-cCchhh
Confidence 344999999999999999888 999999999987654 789999999999999999999999999999 799999
Q ss_pred EEEeccCC
Q 027505 187 IVLIEPFN 194 (222)
Q Consensus 187 v~~a~~~~ 194 (222)
|++|+...
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99997644
No 72
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=9.9e-11 Score=98.91 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
...-.+|||+||...+++.+|+++|.+||+|+++++... +|+|||+|.+..+|+.|....-+..+++|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 345578999999999999999999999999999998765 47999999999999999886655655599999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
|.++..
T Consensus 299 Wg~~~~ 304 (377)
T KOG0153|consen 299 WGRPKQ 304 (377)
T ss_pred eCCCcc
Confidence 999944
No 73
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=6.8e-11 Score=92.10 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=119.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEE 92 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~ 92 (222)
..+|.||+-+. -+..+..+|.. .++..+.|..++.+-+|+||+|+++.+|+.| ...+|++.++....++-......
T Consensus 8 ~iyvGNLP~di--RekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~ 85 (241)
T KOG0105|consen 8 RIYVGNLPGDI--REKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRS 85 (241)
T ss_pred eEEecCCCcch--hhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCc
Confidence 34588999885 66677778854 6777778888878889999999999999988 88999999998777655443321
Q ss_pred HHHHhhh----------hcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEEC
Q 027505 93 EEEEAVE----------EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162 (222)
Q Consensus 93 ~~~~~~~----------~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~ 162 (222)
.....-. .-...-+........|.|.+||...+++||++++.+.|.|+...+.+| |++.|+|.
T Consensus 86 s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~ 158 (241)
T KOG0105|consen 86 SSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYL 158 (241)
T ss_pred ccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeee
Confidence 1111000 000111333445678999999999999999999999999999998876 59999999
Q ss_pred CHHHHHHHHHHhCCCee
Q 027505 163 SVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 163 ~~~~a~~Al~~l~g~~~ 179 (222)
..++++-|++.|+.+.+
T Consensus 159 r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 159 RKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ehhhHHHHHHhhccccc
Confidence 99999999999987765
No 74
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.6e-11 Score=107.47 Aligned_cols=180 Identities=13% Similarity=0.123 Sum_probs=128.7
Q ss_pred chhhhhcccceeeecCCCCCCCCCCCC---------CCC-CccccccCCCCCCcccccccchhhhhhhhccCCCcccCCC
Q 027505 12 SSLCNKLYNLQAITQIPTNHLPSLFKT---------KSP-KPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDS 81 (222)
Q Consensus 12 ~~~~~~~~nlsf~t~~~~~~l~~~f~~---------~p~-~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~ 81 (222)
..++..+.|+++.. .++..-..|.. .++ .++-...--....|+|++|.+...+..+..+++.-..+.+
T Consensus 174 q~~r~~v~~~~~~~--~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~ 251 (500)
T KOG0120|consen 174 QARRLYVGNIPFTS--NEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRP 251 (500)
T ss_pred hhhhhcccccCCcc--CcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCC
Confidence 34466777777774 44433333322 221 2222222246789999999999999999999987777765
Q ss_pred CCCcchhhhhhHHHH-------hhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcc
Q 027505 82 QDEPETEQEEEEEEE-------AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154 (222)
Q Consensus 82 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~r 154 (222)
...-..........- ..-.............+++||++||...++..++++...||.+....++.|..+|.++
T Consensus 252 ~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~sk 331 (500)
T KOG0120|consen 252 LKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSK 331 (500)
T ss_pred ceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccccc
Confidence 443222111111000 0011122233445567899999999999999999999999999999999999899999
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEeccCC
Q 027505 155 GFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 155 G~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
||||.+|.+......|+..|||..+ +++.|.|+.|.+..
T Consensus 332 g~af~ey~dpsvtd~A~agLnGm~l-gd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 332 GFAFCEYCDPSVTDQAIAGLNGMQL-GDKKLVVQRAIVGA 370 (500)
T ss_pred ceeeeeeeCCcchhhhhcccchhhh-cCceeEeehhhccc
Confidence 9999999999999999999999999 89999999886633
No 75
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.02 E-value=7.5e-10 Score=98.94 Aligned_cols=82 Identities=24% Similarity=0.391 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
++.+||.+|...+...+|+.+|++||.|.-.+++.+..+...|+|+||++.+.++|.+||..|+.++| .||.|.|+.++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL-HGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL-HGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh-cceeeeeeecc
Confidence 46899999999999999999999999999999999988888999999999999999999999999999 89999999987
Q ss_pred cCC
Q 027505 192 PFN 194 (222)
Q Consensus 192 ~~~ 194 (222)
...
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 644
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.02 E-value=6.8e-10 Score=96.46 Aligned_cols=77 Identities=34% Similarity=0.499 Sum_probs=69.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||++.|++.|++-|..||.|..+.|+. .|+++| .|.|.++++|++||..|+|..+ +||.|.|
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l-~Gr~I~V 605 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRL-DGRNIKV 605 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcc-cCceeee
Confidence 345678899999999999999999999999999999843 588888 8999999999999999999999 9999999
Q ss_pred EEe
Q 027505 188 VLI 190 (222)
Q Consensus 188 ~~a 190 (222)
.+.
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 863
No 77
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.02 E-value=4.8e-10 Score=91.24 Aligned_cols=83 Identities=22% Similarity=0.402 Sum_probs=75.3
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
.....+.+||+|.|..+++++-|-..|.+|-.-...++++|+.||+++||+||.|.+..++..|++.|+|..+ +.|.|+
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV-gsrpik 263 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV-GSRPIK 263 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc-ccchhH
Confidence 3445678999999999999999999999998888889999999999999999999999999999999999999 899887
Q ss_pred EEEe
Q 027505 187 IVLI 190 (222)
Q Consensus 187 v~~a 190 (222)
+..+
T Consensus 264 lRkS 267 (290)
T KOG0226|consen 264 LRKS 267 (290)
T ss_pred hhhh
Confidence 7543
No 78
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=9.7e-10 Score=90.16 Aligned_cols=83 Identities=22% Similarity=0.408 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCC--cEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADG--ICIAIV 188 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~g--r~i~v~ 188 (222)
+++++|||-|...-.|+|++.+|..||.|.+|.+.+.. .|.+||||||.|.+..+|..||..|+|..-..| ..|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56799999999999999999999999999999999987 899999999999999999999999999866455 468899
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
++...+
T Consensus 97 ~ADTdk 102 (371)
T KOG0146|consen 97 FADTDK 102 (371)
T ss_pred eccchH
Confidence 886644
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.98 E-value=2.8e-09 Score=87.73 Aligned_cols=80 Identities=31% Similarity=0.566 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
...+|+|.|||+.++++||+++|..||.+..+.+.+++ .|++.|.|-|.|...++|.+|++.++|..+ +|+.|++...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~l-dG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVAL-DGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCccc-CCceeeeEEe
Confidence 34689999999999999999999999999999999998 899999999999999999999999999877 9999999876
Q ss_pred cc
Q 027505 191 EP 192 (222)
Q Consensus 191 ~~ 192 (222)
.+
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 54
No 80
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.97 E-value=1.7e-10 Score=102.59 Aligned_cols=106 Identities=19% Similarity=0.308 Sum_probs=88.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....+++|+..|+..++.-+|.++|+.+|.|.+++++.|+.+++++|.|||+|.+.+.+..|+. |.|..+ .|-+|.|.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrl-lg~pv~vq 253 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRL-LGVPVIVQ 253 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcc-cCceeEec
Confidence 3445789999999999999999999999999999999999999999999999999999999997 899998 79999998
Q ss_pred EeccCCC-----------CCCCCCceeEEecCCcCcccc
Q 027505 189 LIEPFNC-----------QHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 189 ~a~~~~~-----------~~~~~~r~~l~vgnl~~~v~~ 216 (222)
....... +...+.-..||||||+|+++.
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite 292 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITE 292 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchH
Confidence 7644221 111222222999999999874
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.95 E-value=2.3e-09 Score=90.65 Aligned_cols=79 Identities=20% Similarity=0.337 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeE--------EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCC
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADG 182 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~--------~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~g 182 (222)
....|||.|||.++|-+++.++|++||-|.. |.|.++. .|+.+|=|.|+|...++++-|++.|++..+ .|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~-rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL-RG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc-cC
Confidence 4556999999999999999999999998753 7888887 699999999999999999999999999999 89
Q ss_pred cEEEEEEec
Q 027505 183 ICIAIVLIE 191 (222)
Q Consensus 183 r~i~v~~a~ 191 (222)
+.|+|+.|+
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999999883
No 82
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.94 E-value=7.7e-09 Score=91.12 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=83.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
.....|-+++|||++|++||.++|+.+ .|..+.+++. +|+..|-|||+|.+++++++|++ .+...+ +.|.|.|-.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~m-g~RYIEVf~ 82 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESM-GHRYIEVFT 82 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHh-CCceEEEEc
Confidence 345678889999999999999999998 4777766664 79999999999999999999999 477777 889999987
Q ss_pred eccCCC--------CCCCCCceeEEecCCcCccccc
Q 027505 190 IEPFNC--------QHFGNGRCLVFLSYIILDVHSI 217 (222)
Q Consensus 190 a~~~~~--------~~~~~~r~~l~vgnl~~~v~~~ 217 (222)
+.+... ...+..-.+|-+..|||.+++.
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~ 118 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEE 118 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHH
Confidence 755332 1222356789999999998764
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=4.2e-10 Score=90.80 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=110.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCCCCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhhH
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEEE 93 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (222)
-+||.+|++.+ .+..+...|..-. +.... ..=.|||||+|.+..+++-+ -.+++..+.+....++......-.
T Consensus 3 rv~vg~~~~~~--~~~d~E~~f~~yg-~~~d~---~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 3 RVYIGRLPYRA--RERDVERFFKGYG-KIPDA---DMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred ceeecccCCcc--chhHHHHHHhhcc-ccccc---eeecccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 36788999997 6767666664311 11111 13368999999999999887 888888887766332222111000
Q ss_pred HHHhh--hh--cccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 94 EEEAV--EE--EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 94 ~~~~~--~~--~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
..... .. ............+.++|.|++..+.+.+|.+.|..+|++....+ .++++||+|...+++.+
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhh
Confidence 00000 00 01111122345678999999999999999999999999854433 36799999999999999
Q ss_pred HHHHhCCCeecCCcEEEEEEe
Q 027505 170 AIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 170 Al~~l~g~~~~~gr~i~v~~a 190 (222)
|+..|++..+ .|++|.+...
T Consensus 149 a~~~l~~~~~-~~~~l~~~~~ 168 (216)
T KOG0106|consen 149 ALEKLDGKKL-NGRRISVEKN 168 (216)
T ss_pred cchhccchhh-cCceeeeccc
Confidence 9999999999 8999998543
No 84
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.89 E-value=4.3e-09 Score=86.63 Aligned_cols=83 Identities=25% Similarity=0.450 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
..+...+||+|+.+.++.++++.+|+.||.|..+.++.|+..|.++||+||+|.+.+.++.|+. |++..| .|+.+.|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i-~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI-PGPAIEVT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc-ccccceee
Confidence 4456789999999999999999999999999999999999899999999999999999999999 999999 89999998
Q ss_pred EeccC
Q 027505 189 LIEPF 193 (222)
Q Consensus 189 ~a~~~ 193 (222)
+.+-+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 77554
No 85
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.87 E-value=8.6e-09 Score=91.18 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
....|||+|||++++..+|+++|.+||.|+...|......++..+||||+|.+.+.++.||.. +-..+ +++++.|+..
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~i-g~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEI-GGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-Ccccc-CCeeEEEEec
Confidence 345699999999999999999999999999988876543456569999999999999999995 55556 9999999987
Q ss_pred ccCC
Q 027505 191 EPFN 194 (222)
Q Consensus 191 ~~~~ 194 (222)
++..
T Consensus 365 ~~~~ 368 (419)
T KOG0116|consen 365 RPGF 368 (419)
T ss_pred cccc
Confidence 7633
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.82 E-value=4.6e-08 Score=69.66 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=69.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHcc--CCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeec---CCcEEEE
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEA--GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSA---DGICIAI 187 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~--G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~---~gr~i~v 187 (222)
++|.|+|||...+.++|.+++... |....+.++.|..++-+.|||||.|.+++.+.+-.+.++|..+- ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988763 67788999999999999999999999999999999999999871 2456677
Q ss_pred EEecc
Q 027505 188 VLIEP 192 (222)
Q Consensus 188 ~~a~~ 192 (222)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77754
No 87
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.79 E-value=5e-08 Score=78.42 Aligned_cols=137 Identities=13% Similarity=0.169 Sum_probs=101.4
Q ss_pred CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhhHHHHhh--------------------hhcccc----
Q 027505 50 QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEEEEEEAV--------------------EEEEEP---- 104 (222)
Q Consensus 50 ~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~---- 104 (222)
.+.+|.+||.|.+.+.|..| .+++|.-+-++++...........-...+ +.....
T Consensus 49 ~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~ 128 (221)
T KOG4206|consen 49 PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYN 128 (221)
T ss_pred CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccc
Confidence 48899999999999988887 78899888787766544332211110000 000000
Q ss_pred ----------cccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh
Q 027505 105 ----------KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174 (222)
Q Consensus 105 ----------~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l 174 (222)
..........+|+.|||.+++.+.+..+|.+|..-+.++++... .|.|||+|.+...+..|...+
T Consensus 129 ~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~l 203 (221)
T KOG4206|consen 129 MNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQAL 203 (221)
T ss_pred cccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhh
Confidence 01224456789999999999999999999999999999988754 689999999999999999999
Q ss_pred CCCeecCCcEEEEEEec
Q 027505 175 DGSVSADGICIAIVLIE 191 (222)
Q Consensus 175 ~g~~~~~gr~i~v~~a~ 191 (222)
++..|-....+.|.+++
T Consensus 204 q~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 204 QGFKITKKNTMQITFAK 220 (221)
T ss_pred ccceeccCceEEecccC
Confidence 99988446777777653
No 88
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.78 E-value=8.8e-09 Score=87.40 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=118.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC----C-CCCccccccCCCCCCcccccccchhhhhhhhccCCC-cccCCCCCCcchh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT----K-SPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGF-QVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~----~-p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~-~~~~~~~~~~~~~ 88 (222)
..|+.++++.. .+.....|.. . +.....+.....++|++.+-|...+....+....+. ..........-..
T Consensus 90 ~~f~g~~s~~~---e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 90 TFFVGELSENI---EESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred cccccccccch---hhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 55677777774 2223333322 1 222223344478999999999999999988777664 4444333222221
Q ss_pred hhhhHHHHhhhhcccccccCCCCCCEEE-EcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHH
Q 027505 89 QEEEEEEEAVEEEEEPKVAASDEAARLY-VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~if-V~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a 167 (222)
.... ...............++| |++|++.+++++|+.+|..+|.|..++++.+..++..+||||++|......
T Consensus 167 ~~~~------~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 167 RRGL------RPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred cccc------cccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 1110 000111112233344566 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeecCCcEEEEEEeccCCCC
Q 027505 168 KEAIRLFDGSVSADGICIAIVLIEPFNCQ 196 (222)
Q Consensus 168 ~~Al~~l~g~~~~~gr~i~v~~a~~~~~~ 196 (222)
..++.. +...+ +++++.+....++...
T Consensus 241 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 241 KLALND-QTRSI-GGRPLRLEEDEPRPKS 267 (285)
T ss_pred HHHhhc-ccCcc-cCcccccccCCCCccc
Confidence 999886 67777 8999999999887643
No 89
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=9.1e-09 Score=91.85 Aligned_cols=72 Identities=25% Similarity=0.364 Sum_probs=64.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
.-...+|+|-|||..++.++|..+|+.||+|+.++.. -..+|..||+|-|..+|++|++.|++.++ .|++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~-~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREI-AGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHh-hhhhhc
Confidence 3456789999999999999999999999999997664 44589999999999999999999999999 788877
No 90
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.2e-08 Score=82.52 Aligned_cols=71 Identities=27% Similarity=0.541 Sum_probs=64.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
..+||++||+.+.+.+|..+|..||.|.++.+. .||+||+|.+..+|..|+..+|+..+ .|-.+.|+++++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l-~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKEL-CGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCcee-cceeeeeecccc
Confidence 369999999999999999999999999998874 37999999999999999999999999 677789999885
No 91
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.70 E-value=3e-08 Score=90.71 Aligned_cols=104 Identities=22% Similarity=0.308 Sum_probs=82.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCC---CCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV---TDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~---tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
.+.+||+||++.++++.|-..|+.||+|.+++|+..+. ..+.+-||||.|-+..++++|++.|+|..+ .++.+++.
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv-~~~e~K~g 252 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV-MEYEMKLG 252 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee-eeeeeeec
Confidence 46899999999999999999999999999999988652 235678999999999999999999999999 89999999
Q ss_pred EeccCCC--------CCCCCCceeEEecCCcCcccc
Q 027505 189 LIEPFNC--------QHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 189 ~a~~~~~--------~~~~~~r~~l~vgnl~~~v~~ 216 (222)
|+++..- +..-......--.||+|++.+
T Consensus 253 Wgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp 288 (877)
T KOG0151|consen 253 WGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQP 288 (877)
T ss_pred cccccccCCccccCCChhhhccCCCCccCCcccCCC
Confidence 9965331 111112222334577887764
No 92
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=7.7e-09 Score=96.19 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=112.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccc---cCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLE---KAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~---~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 90 (222)
..|++||+..- ..+.|...|.. .-....++. ..++.+|.+++.|..++++..+..++...+-+
T Consensus 669 ~~fvsnl~~~~--~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----------- 735 (881)
T KOG0128|consen 669 KIFVSNLSPKM--SEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----------- 735 (881)
T ss_pred HHHHhhcchhh--cCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-----------
Confidence 68999999996 67777766643 333333333 12789999999999999888875554433332
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
...+||+|.|+..|.+.++.++.++|.+.+++++..+ .|+++|.|||.|.++.++.++
T Consensus 736 ---------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~ 793 (881)
T KOG0128|consen 736 ---------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRK 793 (881)
T ss_pred ---------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhh
Confidence 2369999999999999999999999999999998887 899999999999999999999
Q ss_pred HHHhCCCeecCCcEEEEEEecc
Q 027505 171 IRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 171 l~~l~g~~~~~gr~i~v~~a~~ 192 (222)
+..+++..+ .-+.+.|..+.|
T Consensus 794 ~~s~d~~~~-rE~~~~v~vsnp 814 (881)
T KOG0128|consen 794 VASVDVAGK-RENNGEVQVSNP 814 (881)
T ss_pred cccchhhhh-hhcCccccccCC
Confidence 887777766 666677777655
No 93
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=2.5e-08 Score=79.83 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
....+|||+|+...++++-|.++|-+.|+|..+.|+.++ .++.+ ||||.|.++.++.-|++.+||..+ .++.+.|.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l-~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDL-EEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchh-ccchhhccc
Confidence 346789999999999999999999999999999998887 67777 999999999999999999999998 788888775
Q ss_pred ec
Q 027505 190 IE 191 (222)
Q Consensus 190 a~ 191 (222)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 43
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.58 E-value=4.9e-07 Score=72.70 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecC-CCCCcccEEEEEECCHHHHHHHHHHhCCCeecC---CcEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-VTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSAD---GICI 185 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~-~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~---gr~i 185 (222)
+.-+++||.+||.++...+|..+|..|-.-+.+.|.+.. ...-.+-+||++|.+...|.+|+..|||..+ + +..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrF-DpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRF-DPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeee-ccccCcee
Confidence 356799999999999999999999998655555554422 1223468999999999999999999999987 4 5678
Q ss_pred EEEEeccCCC
Q 027505 186 AIVLIEPFNC 195 (222)
Q Consensus 186 ~v~~a~~~~~ 195 (222)
+|++|+.+.+
T Consensus 111 hiElAKSNtK 120 (284)
T KOG1457|consen 111 HIELAKSNTK 120 (284)
T ss_pred EeeehhcCcc
Confidence 9998877553
No 95
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.47 E-value=7.6e-07 Score=75.66 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=118.2
Q ss_pred hhcccceeeecCCCCCCCCCCCCC-----CCCc--c--cccc--CCCCCCcccccccchhhhhhh-hccCCCcccCCCCC
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKTK-----SPKP--L--KLEK--AQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQD 83 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~~-----p~~~--~--~l~~--~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~ 83 (222)
++|+||+-+- |.+.....|..+ .|+. . +|=. .|..+|=|++.|--.+.+..| .-+++..+.+..+.
T Consensus 137 VYVsgLP~Di--T~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r 214 (382)
T KOG1548|consen 137 VYVSGLPLDI--TVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR 214 (382)
T ss_pred EEecCCCCcc--cHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence 6799999885 777766666551 1111 1 1211 289999999999999999999 77788888888766
Q ss_pred Ccchhhhh------------------hHHHHhhh----hcccccccCCCCCCEEEEcCCCC----CCC-------HHHHH
Q 027505 84 EPETEQEE------------------EEEEEAVE----EEEEPKVAASDEAARLYVGNLPY----SMT-------SSSLA 130 (222)
Q Consensus 84 ~~~~~~~~------------------~~~~~~~~----~~~~~~~~~~~~~~~ifV~nLp~----~~t-------~~~L~ 130 (222)
++...=+. ...+.++. ......+......++|.+.|+=- ..+ +++|+
T Consensus 215 VerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~ 294 (382)
T KOG1548|consen 215 VERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLT 294 (382)
T ss_pred EehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHH
Confidence 65432110 00011111 11122344555678899999822 233 35677
Q ss_pred HHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEeccC
Q 027505 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPF 193 (222)
Q Consensus 131 ~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~ 193 (222)
+-+.+||.|.+|.+. ...+.|.+-|.|.+.++|..||+.|+|..+ +||.|...+...+
T Consensus 295 eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f-dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 295 EECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTMDGRWF-DGRQLTASIWDGK 352 (382)
T ss_pred HHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHhcCeee-cceEEEEEEeCCc
Confidence 788999999998764 235689999999999999999999999999 9999987765543
No 96
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.47 E-value=1e-07 Score=81.83 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=118.6
Q ss_pred hhcccceeeecCCCCCCCCCCC-CCCCCcc-----cccc-CCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchh
Q 027505 16 NKLYNLQAITQIPTNHLPSLFK-TKSPKPL-----KLEK-AQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~-~~p~~~~-----~l~~-~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 88 (222)
+.+-.|+|+. +......-|. .+|..-. =... ++++.|=+|++|..+++++.++..+...+..+.++.-.+-
T Consensus 164 vRmRGLPfda--t~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 164 VRMRGLPFDA--TALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred EEecCCCCCc--chHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3444699996 7777777773 2332211 1112 3889999999999999999998888887777766543332
Q ss_pred hhhhHHHHhhhhccc-------------cc--ccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCC-eeE--EEEeecCCC
Q 027505 89 QEEEEEEEAVEEEEE-------------PK--VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VAS--AEIVYDRVT 150 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~-i~~--~~l~~d~~t 150 (222)
..+..+.-....... +. .........|-+++||++++.++|..+|..|.. |.. +.++.+. .
T Consensus 242 aaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-q 320 (508)
T KOG1365|consen 242 AAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-Q 320 (508)
T ss_pred HHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-C
Confidence 222222111111000 00 011122457889999999999999999999864 444 7888876 7
Q ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 151 g~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
|+..|-|||+|.+.+.|..|..+.++... .+|.|.|-.+..
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~m-k~RYiEvfp~S~ 361 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLM-KSRYIEVFPCSV 361 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhc-ccceEEEeeccH
Confidence 99999999999999999999998777665 689998876643
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.46 E-value=1.6e-07 Score=75.53 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=53.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
.++||.||..+++|++|+.+|+.|.....++|.. + .| -..||++|++.+.|..|+..|+|..|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~-~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R-GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C-CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 4899999999999999999999997766666532 2 33 45899999999999999999999877
No 98
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.45 E-value=1.6e-07 Score=80.67 Aligned_cols=171 Identities=14% Similarity=0.079 Sum_probs=112.1
Q ss_pred ccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCC
Q 027505 45 KLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSM 124 (222)
Q Consensus 45 ~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~ 124 (222)
.++..++-.|-+.+.|.+++..+.+.+.+.+-..++.+++-....++--.-..-...+..........-.|-.++||+++
T Consensus 94 OG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfda 173 (508)
T KOG1365|consen 94 CLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDA 173 (508)
T ss_pred eehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCc
Confidence 35555888899999999999999999999998888887764443222111000000011111111222345557999999
Q ss_pred CHHHHHHHHHcc----CCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc--------
Q 027505 125 TSSSLAEVFAEA----GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP-------- 192 (222)
Q Consensus 125 t~~~L~~~F~~~----G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~-------- 192 (222)
++.++.++|... |....+-++..+ +|+..|-|||.|..+++|+.|+.+ |...+ +.|.|.+-.+..
T Consensus 174 t~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~i-GqRYIElFRSTaaEvqqvln 250 (508)
T KOG1365|consen 174 TALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNI-GQRYIELFRSTAAEVQQVLN 250 (508)
T ss_pred chHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHH-hHHHHHHHHHhHHHHHHHHH
Confidence 999999999732 345667666655 899999999999999999999985 44444 555554433211
Q ss_pred --------------------CCCCCCCCCceeEEecCCcCcccccc
Q 027505 193 --------------------FNCQHFGNGRCLVFLSYIILDVHSIH 218 (222)
Q Consensus 193 --------------------~~~~~~~~~r~~l~vgnl~~~v~~~~ 218 (222)
..--...+.+..|.+..|||+++--|
T Consensus 251 r~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEd 296 (508)
T KOG1365|consen 251 REVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVED 296 (508)
T ss_pred hhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHH
Confidence 00011223467899999999987544
No 99
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.33 E-value=1.8e-07 Score=76.88 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=106.9
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||.|.+.+++..| ..+++..+.++...+....
T Consensus 116 ~~l~v~nL~~~~--~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 116 NTLFVGNLPYDV--TEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred ceEEEeCCCCCC--CHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 577899999998 99999999965 44444444443 79999999999999999999 7778899999887765532
Q ss_pred h----hhhHH----HHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEE
Q 027505 89 Q----EEEEE----EEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160 (222)
Q Consensus 89 ~----~~~~~----~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~ 160 (222)
. ..... ....................+++++++..+...++...|..+|.+....+...........+.++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 194 PASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred cccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccc
Confidence 1 11111 000011122223344556789999999999999999999999999777776655333344455544
Q ss_pred ECCHHHHHHHHH
Q 027505 161 MGSVEEAKEAIR 172 (222)
Q Consensus 161 f~~~~~a~~Al~ 172 (222)
+.....+..+..
T Consensus 274 ~~~~~~~~~~~~ 285 (306)
T COG0724 274 NEASKDALESNS 285 (306)
T ss_pred hhHHHhhhhhhc
Confidence 444444444433
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=1.3e-06 Score=78.55 Aligned_cols=153 Identities=15% Similarity=0.139 Sum_probs=98.2
Q ss_pred CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhhHHHHhhh--h--c----ccccc
Q 027505 39 KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEEEEEEAVE--E--E----EEPKV 106 (222)
Q Consensus 39 ~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~----~~~~~ 106 (222)
.|.+.++|... +.++||+|-+|-++.-.+.| +.++|-.+.+....+..+-........... . - .....
T Consensus 314 g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q 393 (500)
T KOG0120|consen 314 GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQ 393 (500)
T ss_pred ccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcc
Confidence 45666666665 79999999999999988888 888988887765544333222211111111 0 0 00001
Q ss_pred cCCCCCCEEEEcCC--CCCC-CH-------HHHHHHHHccCCeeEEEEeecCCC---CCcccEEEEEECCHHHHHHHHHH
Q 027505 107 AASDEAARLYVGNL--PYSM-TS-------SSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRL 173 (222)
Q Consensus 107 ~~~~~~~~ifV~nL--p~~~-t~-------~~L~~~F~~~G~i~~~~l~~d~~t---g~~rG~aFV~f~~~~~a~~Al~~ 173 (222)
....+...+...|+ |.+. .+ ++++.-+++||.|..|.++++... .-..|--||+|.+.+++++|.+.
T Consensus 394 ~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~ 473 (500)
T KOG0120|consen 394 MAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE 473 (500)
T ss_pred cCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH
Confidence 11112222333332 1111 11 245566789999999999988322 34567789999999999999999
Q ss_pred hCCCeecCCcEEEEEEecc
Q 027505 174 FDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 174 l~g~~~~~gr~i~v~~a~~ 192 (222)
|+|.++ +||.+...|..+
T Consensus 474 L~GrKF-~nRtVvtsYyde 491 (500)
T KOG0120|consen 474 LTGRKF-ANRTVVASYYDE 491 (500)
T ss_pred ccCcee-CCcEEEEEecCH
Confidence 999999 899888877644
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.18 E-value=6.5e-06 Score=69.98 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=63.7
Q ss_pred CCCEEEEcCCCCCCCHHH----H--HHHHHccCCeeEEEEeecCCC-CCccc-EE-EEEECCHHHHHHHHHHhCCCeecC
Q 027505 111 EAARLYVGNLPYSMTSSS----L--AEVFAEAGTVASAEIVYDRVT-DRSRG-FG-FVTMGSVEEAKEAIRLFDGSVSAD 181 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~----L--~~~F~~~G~i~~~~l~~d~~t-g~~rG-~a-FV~f~~~~~a~~Al~~l~g~~~~~ 181 (222)
..+-+||-+||+.+..++ | .++|++||.|..|.+-+...+ ....+ +| ||+|.+.++|.+||...+|..+ +
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~-D 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL-D 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc-c
Confidence 346799999999877665 3 479999999999887654311 11233 32 9999999999999999999999 9
Q ss_pred CcEEEEEEecc
Q 027505 182 GICIAIVLIEP 192 (222)
Q Consensus 182 gr~i~v~~a~~ 192 (222)
||.|+..+...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999988643
No 102
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.11 E-value=2e-07 Score=71.55 Aligned_cols=78 Identities=10% Similarity=-0.070 Sum_probs=61.2
Q ss_pred hcccchhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCC
Q 027505 8 MAASSSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQ 82 (222)
Q Consensus 8 ~~~~~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~ 82 (222)
+.+...-..||.||++.+ +++.|...|.. .++..+.+..+ +.++|||||+|.+.++|+.| ..+++..++++..
T Consensus 29 ~~~~~~~~lfVgnL~~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGT--DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred cccCCCCEEEEeCCCCCC--CHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 334445578899999998 99999999955 45555555543 68899999999999999999 5689999999877
Q ss_pred CCcch
Q 027505 83 DEPET 87 (222)
Q Consensus 83 ~~~~~ 87 (222)
.+...
T Consensus 107 ~V~~a 111 (144)
T PLN03134 107 RVNPA 111 (144)
T ss_pred EEEeC
Confidence 66443
No 103
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=7.9e-06 Score=72.87 Aligned_cols=170 Identities=18% Similarity=0.093 Sum_probs=102.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CC---CCcccccc--CCCCCC---cccccccchhhhhhhhcc-----CCCcccCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KS---PKPLKLEK--AQNPSA---LHLSLLSLSYFRQFSASF-----DGFQVTED 80 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p---~~~~~l~~--~~~s~g---f~fv~~~~~~~a~~a~~~-----~~~~~~~~ 80 (222)
-+||.-|++.- ++..+...|.. .+ .=|.+... ..-++| |.|..|+++..++.-... ..+-++-.
T Consensus 261 KVFvGGlp~di--se~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vs 338 (520)
T KOG0129|consen 261 KVFVGGLPWDI--TEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVS 338 (520)
T ss_pred ceeecCCCccc--cHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEe
Confidence 46788888885 66666666643 11 01101111 123445 999999999877654221 11111111
Q ss_pred CCCCcchhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHH-ccCCeeEEEEeecCCCCCcccEEEE
Q 027505 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFV 159 (222)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~-~~G~i~~~~l~~d~~tg~~rG~aFV 159 (222)
.......+.+.-.+--....--.......+..++||||+||.-++.++|..+|. -||.|..+-|-.|++-+-++|-|-|
T Consensus 339 s~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRV 418 (520)
T KOG0129|consen 339 SPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRV 418 (520)
T ss_pred cCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCccee
Confidence 100000000000000000000011234455678999999999999999999999 5999999999999767889999999
Q ss_pred EECCHHHHHHHHH----HhCCCeecCCcEEEEE
Q 027505 160 TMGSVEEAKEAIR----LFDGSVSADGICIAIV 188 (222)
Q Consensus 160 ~f~~~~~a~~Al~----~l~g~~~~~gr~i~v~ 188 (222)
+|.+..+--+||. .|+...| .+++.|+
T Consensus 419 tFsnqqsYi~AIsarFvql~h~d~--~KRVEIk 449 (520)
T KOG0129|consen 419 TFSNQQAYIKAISARFVQLDHTDI--DKRVEIK 449 (520)
T ss_pred eecccHHHHHHHhhheEEEecccc--ceeeeec
Confidence 9999999999997 3455555 3456665
No 104
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.05 E-value=3.4e-05 Score=67.15 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=67.8
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 112 AARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 112 ~~~ifV~nLp~~-~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
...|.|.||..+ +|.+.|..+|+.||.|.+|+|.+++ +--|.|.|.+...|+-|+..|+|..+ .|++|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l-~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKL-YGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhccee-cCceEEEeec
Confidence 567889998665 8999999999999999999999876 35799999999999999999999999 7999999998
Q ss_pred cc
Q 027505 191 EP 192 (222)
Q Consensus 191 ~~ 192 (222)
+-
T Consensus 371 KH 372 (492)
T KOG1190|consen 371 KH 372 (492)
T ss_pred cC
Confidence 64
No 105
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=4.5e-05 Score=68.81 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=65.4
Q ss_pred CCCCEEEEcCCCCCCCH------HHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc
Q 027505 110 DEAARLYVGNLPYSMTS------SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI 183 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~------~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr 183 (222)
.-...|+|.|+|---.. .-|.++|+++|+|....++.+. .|+++||.|++|.+..+|+.|++.|||+.+...+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 55678999999875332 2356889999999999999887 5559999999999999999999999999996666
Q ss_pred EEEEEE
Q 027505 184 CIAIVL 189 (222)
Q Consensus 184 ~i~v~~ 189 (222)
+..|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 776653
No 106
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.94 E-value=1e-05 Score=69.22 Aligned_cols=83 Identities=25% Similarity=0.328 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCee--------EEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCC
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVA--------SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADG 182 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~--------~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~g 182 (222)
...+|||-+||..+++.++.++|.++|.|. .|.|-+|+.|++.||-|-|.|.+...|+.|+.-+++..+ .|
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf-~g 143 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF-CG 143 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc-cC
Confidence 455899999999999999999999999885 367888999999999999999999999999999999999 78
Q ss_pred cEEEEEEeccCC
Q 027505 183 ICIAIVLIEPFN 194 (222)
Q Consensus 183 r~i~v~~a~~~~ 194 (222)
..|+|..|.-++
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 899998886654
No 107
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.91 E-value=1.5e-05 Score=65.46 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=62.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCC--------CCcccE----EEEEECCHHHHHHHHHHhCCCe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT--------DRSRGF----GFVTMGSVEEAKEAIRLFDGSV 178 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~t--------g~~rG~----aFV~f~~~~~a~~Al~~l~g~~ 178 (222)
....||+++||+......|+++|++||+|-.|.|.....+ |.++++ |.|+|.+...|+.....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999988776544 333333 6789999999999999999999
Q ss_pred ecCCcE
Q 027505 179 SADGIC 184 (222)
Q Consensus 179 ~~~gr~ 184 (222)
| +|++
T Consensus 153 I-ggkk 157 (278)
T KOG3152|consen 153 I-GGKK 157 (278)
T ss_pred c-CCCC
Confidence 9 7764
No 108
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.84 E-value=1.4e-06 Score=72.30 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=61.0
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||++.+ ++..|+..|.. .++..+.+.....++|||||+|.++++++.+..+++..+.++...+...
T Consensus 6 tVfVgNLs~~t--TE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 6 TVKVSNVSLKA--TERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPA 77 (260)
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEec
Confidence 67899999998 99999999944 6778888877756789999999999999999889999999987765443
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.84 E-value=8.7e-07 Score=82.84 Aligned_cols=70 Identities=27% Similarity=0.424 Sum_probs=60.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
....++||+||+..+.+.+|...|..+|.+..+++......++.||+||++|.+++.+.+|+...+++.+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3456899999999999999999999999988887776666899999999999999999999996555554
No 110
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.84 E-value=0.0001 Score=50.70 Aligned_cols=68 Identities=28% Similarity=0.345 Sum_probs=46.5
Q ss_pred CEEEEcCCCCCCCHHH----HHHHHHccC-CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 113 ARLYVGNLPYSMTSSS----LAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~----L~~~F~~~G-~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
..|||.|||-+..... |++++..+| .|..+. .|-|+|.|.+.+.|.+|.+.|+|... -|++|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdV-fG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDV-FGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--S-SSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhccccc-ccceEEE
Confidence 3589999999988765 556666775 565551 37899999999999999999999998 5999999
Q ss_pred EEec
Q 027505 188 VLIE 191 (222)
Q Consensus 188 ~~a~ 191 (222)
.+..
T Consensus 72 ~~~~ 75 (90)
T PF11608_consen 72 SFSP 75 (90)
T ss_dssp ESS-
T ss_pred EEcC
Confidence 8873
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00013 Score=65.32 Aligned_cols=62 Identities=16% Similarity=0.404 Sum_probs=46.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecC-CC--CCccc---EEEEEECCHHHHHHHHHH
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-VT--DRSRG---FGFVTMGSVEEAKEAIRL 173 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~-~t--g~~rG---~aFV~f~~~~~a~~Al~~ 173 (222)
-.++||||+||++++|+.|...|..||.+. +..+... .. --++| |+|+.|+++.++..-+..
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 457999999999999999999999999853 2222111 01 13466 999999999988876543
No 112
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.75 E-value=3.3e-06 Score=69.21 Aligned_cols=71 Identities=7% Similarity=0.108 Sum_probs=61.8
Q ss_pred hhhhcccceeeecCCCCCCCCCC-CCCCCCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLF-KTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f-~~~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 86 (222)
.+.||.||++.| +++.|+..| .+.++..+.+...+...|||||+|++++.++.+..++|..+.++.+....
T Consensus 6 ~TV~V~NLS~~t--TE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 6 YTAEVTNLSPKA--TEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred eEEEEecCCCCC--CHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 367899999999 999999999 44788888888887888999999999999999999999999888765533
No 113
>PLN03213 repressor of silencing 3; Provisional
Probab=97.72 E-value=3.4e-06 Score=74.88 Aligned_cols=72 Identities=8% Similarity=0.055 Sum_probs=57.8
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccch--hhhhhh-hccCCCcccCCCCCCcchh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLS--YFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~--~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
+..||.||+|.+ +++.|...|.. ...+.+.++.. +.||||||+|... ....++ ..++|....|+.+.+....
T Consensus 11 MRIYVGNLSydV--TEDDLravFSeFGsVkdVEIpRE-TGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 11 VRLHVGGLGESV--GRDDLLKIFSPMGTVDAVEFVRT-KGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred eEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEecc-cCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 567899999998 99999999954 55566666644 4499999999998 556666 8899999999988776553
No 114
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=97.69 E-value=5.7e-06 Score=70.02 Aligned_cols=80 Identities=9% Similarity=0.040 Sum_probs=61.3
Q ss_pred hhcccchhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhh-hccCCCcccCCCCC
Q 027505 7 SMAASSSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQD 83 (222)
Q Consensus 7 ~~~~~~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~ 83 (222)
|+..+-|=.-+|||++|.= -+..|+..|.. .++-.+.+... .-|+|||||+|..+++++++ .+++|..++|+.++
T Consensus 90 s~s~~~pkRLhVSNIPFrF--RdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRF--RDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccc--cCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3444455577899999996 55568887755 44444444443 58999999999999999999 99999999999988
Q ss_pred Ccchh
Q 027505 84 EPETE 88 (222)
Q Consensus 84 ~~~~~ 88 (222)
+...-
T Consensus 168 Vn~AT 172 (376)
T KOG0125|consen 168 VNNAT 172 (376)
T ss_pred Eeccc
Confidence 75443
No 115
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.63 E-value=0.00014 Score=52.72 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=42.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCC-----eecCCcEEEE
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS-----VSADGICIAI 187 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~-----~~~~gr~i~v 187 (222)
..|.+.+++..++.++|++.|++||.|..|.+... .--|||.|.+.+.|++|+..+.-. .+ .+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i-~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKI-KGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-T-TSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEE-cCceEEE
Confidence 46888899999999999999999999999887553 248999999999999999866433 33 4554544
Q ss_pred E
Q 027505 188 V 188 (222)
Q Consensus 188 ~ 188 (222)
.
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 4
No 116
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.61 E-value=7.3e-06 Score=60.61 Aligned_cols=69 Identities=10% Similarity=0.059 Sum_probs=56.6
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
+.+|.||||-| +++.+-++|.. .+++-+-+..+ -++=||+||+|.+.++|..| .-.++..++.+.+...
T Consensus 38 tvyVgNlSfyt--tEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 38 TVYVGNLSFYT--TEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred eEEEeeeeeee--cHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 77899999999 99999999954 57666555544 67889999999999999988 6668888888776553
No 117
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.60 E-value=8.1e-06 Score=66.21 Aligned_cols=67 Identities=6% Similarity=-0.125 Sum_probs=52.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQD 83 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 83 (222)
=+||.+|.|.| ..+.|+.+|+. ..+.......+ ++|+|||||+|++.+.|..|-.-...-+|++...
T Consensus 14 KifVggL~w~T--~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aN 84 (247)
T KOG0149|consen 14 KIFVGGLAWET--HKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKAN 84 (247)
T ss_pred EEEEcCccccc--chHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccc
Confidence 36899999999 88899999965 34333333332 8999999999999999999977777778887543
No 118
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.59 E-value=6.3e-05 Score=69.42 Aligned_cols=172 Identities=13% Similarity=0.044 Sum_probs=111.7
Q ss_pred hhhcccceeeecCCCCCCCCCCCCCCCCccccccC--C-CCCCcccccccchhhhhhhhccCCCcccCCCCCCcch-hhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--Q-NPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET-EQE 90 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~--~-~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~-~~~ 90 (222)
++-++...|.+ .+...+..|...-.+...|... . .-.|-++|.|.....++.|...+....-.+..+.... +.+
T Consensus 313 y~~~~gm~fn~--~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 313 YNNYKGMEFNN--DFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred eeeeccccccc--ccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccc
Confidence 55666788887 8888899997743333333332 3 3379999999999999988666554443333322111 100
Q ss_pred hhHHHH----------------------hhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeE-EEEeec
Q 027505 91 EEEEEE----------------------AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYD 147 (222)
Q Consensus 91 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~-~~l~~d 147 (222)
.+.... .+.......+.....+..|||..||..+++.++-++|...-.|++ |.|.+-
T Consensus 391 ~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~ 470 (944)
T KOG4307|consen 391 RNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL 470 (944)
T ss_pred cccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC
Confidence 000000 000001111233445679999999999999999999998777776 777776
Q ss_pred CCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 148 RVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 148 ~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+ +++-++.|||.|..++++..|...-+...+ +-|.|+|.-.
T Consensus 471 P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~-G~r~irv~si 511 (944)
T KOG4307|consen 471 P-TDLLRPAAFVAFIHPTAPLTASSVKTKFYP-GHRIIRVDSI 511 (944)
T ss_pred C-cccccchhhheeccccccchhhhccccccc-CceEEEeech
Confidence 6 889999999999998888777764344444 6677888743
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.56 E-value=0.00034 Score=64.71 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=65.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCe-eEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i-~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
+.|-+.|+|++++-+||-++|..|-.+ .+|.+.++. .|+..|-|-|.|++.++|.+|...|++..| ..|.+.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd-~G~pTGe~mvAfes~~eAr~A~~dl~~~~i-~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND-DGVPTGECMVAFESQEEARRASMDLDGQKI-RNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecC-CCCcccceeEeecCHHHHHhhhhccccCcc-cceeEEEEe
Confidence 367889999999999999999999665 456666654 899999999999999999999999999999 788887764
No 120
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.54 E-value=9.2e-05 Score=63.37 Aligned_cols=71 Identities=21% Similarity=0.404 Sum_probs=62.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccC--CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI 183 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G--~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr 183 (222)
...+|||||-|.+|++||.+.+...| .+.++++..++.+|.+||||.+...+....++.++.|-...| .|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i-HGQ 152 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI-HGQ 152 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee-cCC
Confidence 34699999999999999999998776 467777777888899999999999999999999999988888 554
No 121
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.51 E-value=8.5e-06 Score=68.15 Aligned_cols=71 Identities=11% Similarity=0.024 Sum_probs=62.7
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+-||.-|++.| ++..|+.-|.. .|++-+.|+.. +.|+|||||+|+.+.+...| ...+|..++++.+-+...
T Consensus 103 TLFv~RLnydT--~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 103 TLFVARLNYDT--SESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred eeeeeeccccc--cHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 67899999999 99999999955 89999998887 99999999999999999999 888999999988766443
No 122
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=2.1e-05 Score=64.14 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=52.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTED 80 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~ 80 (222)
+..|+|||=+| .+..|.++|.. .|+.-+-|... |.++|||||.|.+.++|..| ..++|+..+.-
T Consensus 191 tvRvtNLsed~--~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L 259 (270)
T KOG0122|consen 191 TVRVTNLSEDM--REDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNL 259 (270)
T ss_pred eeEEecCcccc--ChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceE
Confidence 46799999999 88889998855 45555555554 99999999999999999998 88899877643
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.49 E-value=0.0002 Score=67.82 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=104.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC---CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT---KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~---~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~ 90 (222)
+.|+.||.-+- ++..++..|.- .+-..++....+.-..|+|+-|-....+..+ ..+.+.-+..-....
T Consensus 374 TLf~Gnl~~kl--~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~------ 445 (975)
T KOG0112|consen 374 TLFLGNLDSKL--TESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI------ 445 (975)
T ss_pred hhhhcCcccch--hhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc------
Confidence 56788998885 88888887743 1212222222235567888888877766655 333333332211100
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
.. ........+.+||++|..++....|...|..||.|..|.+-. | .-||+|.|++...++.|
T Consensus 446 -----------gl-G~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 446 -----------GL-GQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAA 507 (975)
T ss_pred -----------cc-cccccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhh
Confidence 00 001334567899999999999999999999999999876532 2 35999999999999999
Q ss_pred HHHhCCCeecCC--cEEEEEEecc
Q 027505 171 IRLFDGSVSADG--ICIAIVLIEP 192 (222)
Q Consensus 171 l~~l~g~~~~~g--r~i~v~~a~~ 192 (222)
+..|.|..| +| ++++|.++.+
T Consensus 508 ~~~~rgap~-G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 508 THDMRGAPL-GGPPRRLRVDLASP 530 (975)
T ss_pred HHHHhcCcC-CCCCcccccccccC
Confidence 999999998 44 5789999865
No 124
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.45 E-value=9.1e-06 Score=65.31 Aligned_cols=133 Identities=24% Similarity=0.314 Sum_probs=100.0
Q ss_pred hhhhcccceeeecCCCCCCCCCC-CCCCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLF-KTKSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f-~~~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~ 89 (222)
.+-||.|+.-.- +++-|.++| ...|.-...+... +..+ |+||.|+.+-.+++| .-++|..+.++++..
T Consensus 10 rtl~v~n~~~~v--~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~----- 81 (267)
T KOG4454|consen 10 RTLLVQNMYSGV--SEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR----- 81 (267)
T ss_pred hHHHHHhhhhhh--hHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc-----
Confidence 366777877664 777778888 3355444444443 5666 999999999999999 555777776544322
Q ss_pred hhhHHHHhhhhcccccccCCCCCCEEEEcC----CCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHH
Q 027505 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGN----LPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ifV~n----Lp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~ 165 (222)
+++.|+ |...++++.+...|++-|.+..+++..+. .|+++-++|+++....
T Consensus 82 ------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 82 ------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLC 136 (267)
T ss_pred ------------------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhh
Confidence 466666 77778899999999999999999999987 6999999999998887
Q ss_pred HHHHHHHHhCCCee
Q 027505 166 EAKEAIRLFDGSVS 179 (222)
Q Consensus 166 ~a~~Al~~l~g~~~ 179 (222)
..-.++....+...
T Consensus 137 ~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 137 AVPFALDLYQGLEL 150 (267)
T ss_pred cCcHHhhhhcccCc
Confidence 77778776665543
No 125
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=97.35 E-value=2.4e-05 Score=62.38 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=54.2
Q ss_pred hcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 17 KLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 17 ~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
.|-||.|.| +.+.|...|.. .....+-++.. ..++||+||.|....+|+.| .++||..+++++..++..
T Consensus 17 kVdNLTyRT--spd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 17 KVDNLTYRT--SPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred EecceeccC--CHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 477999999 99999999965 22222222222 68999999999999999999 899999999998866543
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.32 E-value=0.00012 Score=64.02 Aligned_cols=77 Identities=29% Similarity=0.399 Sum_probs=61.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCC-eeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~-i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
+++|++||.+..+..+|+.+|...-- ...-.|+. .||+||.+.+..++.+|++.++|..-+.|+++.+..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 47899999999999999999986411 11122222 48999999999999999999999976689999999888
Q ss_pred cCCCC
Q 027505 192 PFNCQ 196 (222)
Q Consensus 192 ~~~~~ 196 (222)
++..+
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 76643
No 127
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.30 E-value=0.00067 Score=59.28 Aligned_cols=170 Identities=17% Similarity=0.205 Sum_probs=115.1
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhhH
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEEE 93 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (222)
..|+||.-.. .|+..|...|.- ....-+++-.. -+--++|++.+...|+.| ..++|+.+-++..++...+-..-.
T Consensus 300 llvsnln~~~-VT~d~LftlFgvYGdVqRVkil~n--kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 300 LLVSNLNEEA-VTPDVLFTLFGVYGDVQRVKILYN--KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred EEEecCchhc-cchhHHHHHHhhhcceEEEEeeec--CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 3578888764 588889988854 34333333332 124689999999999999 788999988876665433211111
Q ss_pred -HHHhhhhc--------------c---cccccC-CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcc
Q 027505 94 -EEEAVEEE--------------E---EPKVAA-SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR 154 (222)
Q Consensus 94 -~~~~~~~~--------------~---~~~~~~-~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~r 154 (222)
..+.++.+ + .+.... -.+..++...|+|.+++|++++..|..-|...+... .-++.+
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafk----ff~kd~ 452 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFK----FFQKDR 452 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeee----ecCCCc
Confidence 11111110 0 000000 123457889999999999999999999886544322 135566
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 155 GFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 155 G~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
-+|.+.+.+.++|-.|+-.++...+..+..++|.+++.
T Consensus 453 kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 453 KMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 79999999999999999999999885666899998864
No 128
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.28 E-value=6.2e-05 Score=67.33 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=66.0
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
..+||.|++|+. +++.|...|.. .++.++++..+ |+++||||++|.+.+++..+ ..++|.++.++...+....
T Consensus 19 ~~v~vgnip~~~--se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEG--SEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcc--cHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 567899999998 99999999955 68888888887 99999999999999999988 8999999999988776554
Q ss_pred hhhh
Q 027505 89 QEEE 92 (222)
Q Consensus 89 ~~~~ 92 (222)
....
T Consensus 97 ~~~~ 100 (435)
T KOG0108|consen 97 NRKN 100 (435)
T ss_pred ccch
Confidence 4433
No 129
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.27 E-value=0.00093 Score=42.19 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=41.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al 171 (222)
+.|-|.|.+.+..+. +..+|.+||+|..+.+.. ..-+.++.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 357788888776644 555899999999988762 2359999999999999985
No 130
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.19 E-value=3.9e-06 Score=55.25 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=50.7
Q ss_pred hcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCC
Q 027505 17 KLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDS 81 (222)
Q Consensus 17 ~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~ 81 (222)
||+||+..+ +++.|...|.. .++....+... +.++|+|||.|.+.++++.+ ..+++..+.++.
T Consensus 2 ~v~nlp~~~--t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ 68 (70)
T PF00076_consen 2 YVGNLPPDV--TEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRK 68 (70)
T ss_dssp EEESETTTS--SHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEcCCCCcC--CHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccC
Confidence 689999998 88899998855 45455555552 78899999999999999999 558998887653
No 131
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.01 E-value=0.0057 Score=53.08 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 110 DEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 110 ~~~~~ifV~nLp~~-~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
..++.+.|-+|.-. ++-+.|..+|-.||.|..|++++.+ .|-|.|++.+....++|+..||+..+ -|.+|.|.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~l-fG~kl~v~ 358 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPL-FGGKLNVC 358 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCcc-ccceEEEe
Confidence 34678899999876 5667899999999999999999876 57899999999999999999999999 58889998
Q ss_pred Eecc
Q 027505 189 LIEP 192 (222)
Q Consensus 189 ~a~~ 192 (222)
.++-
T Consensus 359 ~SkQ 362 (494)
T KOG1456|consen 359 VSKQ 362 (494)
T ss_pred eccc
Confidence 8854
No 132
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.88 E-value=0.0065 Score=43.55 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEE-EeecC------CCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc-
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVYDR------VTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI- 183 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~-l~~d~------~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr- 183 (222)
.+-|.|=+.|.. ....+.++|++||.|.+.. +.++. .......+-.|.|.++.+|.+||. -||..+ +|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~-~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF-SGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE-TTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE-cCcE
Confidence 445788888887 4567788999999987764 11100 011234689999999999999999 599999 664
Q ss_pred EEEEEEecc
Q 027505 184 CIAIVLIEP 192 (222)
Q Consensus 184 ~i~v~~a~~ 192 (222)
.+.|.+.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 556777754
No 133
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.84 E-value=0.00065 Score=55.96 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=51.0
Q ss_pred HHHHHHH-ccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 128 SLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 128 ~L~~~F~-~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
++...|. +||+|+.+.+..+. .-.-+|-.||.|..+++|++|+..||+.-+ +|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~-~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWY-NGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccc-cCCcceeeec
Confidence 4444455 89999998766553 456799999999999999999999999999 9999988876
No 134
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.81 E-value=0.0016 Score=55.48 Aligned_cols=105 Identities=16% Similarity=0.067 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
....+.|++++.+.+.+.+...++..+|.+....+........++|++.+.|...+.+..|+.......+ .++.+...+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~-~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVL-DGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccc-ccccccCcc
Confidence 3567899999999999998999999999888777766666789999999999999999999995443455 666665554
Q ss_pred eccCC-------CCCCCCCceeEE-ecCCcCccc
Q 027505 190 IEPFN-------CQHFGNGRCLVF-LSYIILDVH 215 (222)
Q Consensus 190 a~~~~-------~~~~~~~r~~l~-vgnl~~~v~ 215 (222)
...+. .+....+...+| |+|++|+++
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~ 198 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLT 198 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccc
Confidence 43322 122223334444 999999875
No 135
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.74 E-value=0.011 Score=51.38 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=61.1
Q ss_pred cCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc-EEEEEEeccCC
Q 027505 118 GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI-CIAIVLIEPFN 194 (222)
Q Consensus 118 ~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr-~i~v~~a~~~~ 194 (222)
-|--+.+|-+-|..++...|+|..|.|.+. +| --|.|+|++.+.|++|-..|||..|..|. .|+|++|+|..
T Consensus 128 lNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred ecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 355667899999999999999999988764 33 47999999999999999999999986665 78999999844
No 136
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.62 E-value=0.0029 Score=55.73 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=56.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeec---CCC--CCc--------ccEEEEEECCHHHHHHHHHHhCC
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD---RVT--DRS--------RGFGFVTMGSVEEAKEAIRLFDG 176 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d---~~t--g~~--------rG~aFV~f~~~~~a~~Al~~l~g 176 (222)
-..++|.+-|||.+-.-+-|.++|+.+|.|+.|+|... +.+ |.. +-+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35789999999999988999999999999999999775 222 222 45699999999999999997754
Q ss_pred C
Q 027505 177 S 177 (222)
Q Consensus 177 ~ 177 (222)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 137
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.60 E-value=0.016 Score=44.23 Aligned_cols=76 Identities=25% Similarity=0.245 Sum_probs=51.7
Q ss_pred cCCCCCCEEEEcCCCC-----CCCHH----HHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Q 027505 107 AASDEAARLYVGNLPY-----SMTSS----SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~-----~~t~~----~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~ 177 (222)
...++..+|.|.=+.+ ...++ +|-+.|.+||.+.-+|++- +--.|+|.+-..|-+|+. ++|.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~ 92 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGI 92 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCS
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCc
Confidence 3344566777764441 12333 5677889999988777754 367999999999999999 8999
Q ss_pred eecCCcEEEEEEecc
Q 027505 178 VSADGICIAIVLIEP 192 (222)
Q Consensus 178 ~~~~gr~i~v~~a~~ 192 (222)
.+ +|+.|+|.+..|
T Consensus 93 ~v-~g~~l~i~LKtp 106 (146)
T PF08952_consen 93 QV-NGRTLKIRLKTP 106 (146)
T ss_dssp EE-TTEEEEEEE---
T ss_pred EE-CCEEEEEEeCCc
Confidence 99 899999998766
No 138
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.58 E-value=0.0009 Score=57.17 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCCCCCHHHH---HHHHHccCCeeEEEEeecCC----CCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc
Q 027505 111 EAARLYVGNLPYSMTSSSL---AEVFAEAGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI 183 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L---~~~F~~~G~i~~~~l~~d~~----tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr 183 (222)
..+.+||-+|+....++.+ .+.|.+||.|..+.+-.+.. .+.+ .-++|+|...++|..||..++|... +|+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~-dg~ 153 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVD-DGR 153 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHh-hhh
Confidence 3467899999988766554 36799999999998877651 1222 2379999999999999999999998 899
Q ss_pred EEEEEEeccCC
Q 027505 184 CIAIVLIEPFN 194 (222)
Q Consensus 184 ~i~v~~a~~~~ 194 (222)
.++..+..++.
T Consensus 154 ~lka~~gttky 164 (327)
T KOG2068|consen 154 ALKASLGTTKY 164 (327)
T ss_pred hhHHhhCCCcc
Confidence 88777765544
No 139
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=96.54 E-value=4.6e-05 Score=50.48 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=44.3
Q ss_pred hcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhhhcc-CCCcccCC
Q 027505 17 KLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSASF-DGFQVTED 80 (222)
Q Consensus 17 ~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~-~~~~~~~~ 80 (222)
+|+||++.+ +.+.|...|.. .++..+.+... +.++|+|||+|.+++++..+... ++..+.++
T Consensus 2 ~i~nlp~~~--~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 2 YISNLPPST--TEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEESSTTT----HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 689999998 88888888855 34444444443 56899999999999999999444 44666654
No 140
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.00029 Score=54.92 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=53.4
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
.++|.||...+ +...|...|.. .| +.-+|- ..+.||+||+|+++.+|..| -.+||..+.+..+.++..
T Consensus 12 kVYVGnL~~~a--~k~eLE~~F~~yG~---lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 12 KVYVGNLGSRA--TKRELERAFSKYGP---LRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred eEEeccCCCCc--chHHHHHHHHhcCc---ceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 46799999998 88888888843 44 333343 58899999999999999888 899999999976665433
No 141
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.30 E-value=0.017 Score=48.75 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=50.0
Q ss_pred HHHHHHHHccCCeeEEEEeecCCCCCc-ccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 127 SSLAEVFAEAGTVASAEIVYDRVTDRS-RGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 127 ~~L~~~F~~~G~i~~~~l~~d~~tg~~-rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+++++.+.+||.|..|.|...+.-... .---||+|...++|.+|+..|||..+ +||.+...+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF-GGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF-GGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee-cceeeeheec
Confidence 467788999999999887776533323 23469999999999999999999999 9998766543
No 142
>smart00362 RRM_2 RNA recognition motif.
Probab=96.19 E-value=0.00052 Score=44.34 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=45.3
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhh-hccCCCcccCCC
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDS 81 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~ 81 (222)
.+|+||+..+ +...|...|.. .+.....+... +.++|++||+|.+.+.++.+ ..+++..+.++.
T Consensus 2 v~i~~l~~~~--~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 2 LFVGNLPPDV--TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred EEEcCCCCcC--CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 4688998887 77778777744 34333333332 46789999999999999988 566777666543
No 143
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.06 E-value=0.0083 Score=49.58 Aligned_cols=62 Identities=26% Similarity=0.319 Sum_probs=56.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~ 175 (222)
..|||.||+..++-+.+.+.|+.||+|....+..|. .+++.|-++|+|...-.+.+|+...+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 579999999999999999999999999987777775 78999999999999999999998764
No 144
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.06 E-value=0.0077 Score=55.11 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=65.4
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHHc-cCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee--cCC
Q 027505 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS--ADG 182 (222)
Q Consensus 106 ~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~-~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~--~~g 182 (222)
+......+.|+|.||-.-.|...|+.+++. .|.|....| | +.+..|||.|.+.++|.+....|||..+ .++
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 344556789999999999999999999995 566766633 3 2467899999999999999999999876 457
Q ss_pred cEEEEEEecc
Q 027505 183 ICIAIVLIEP 192 (222)
Q Consensus 183 r~i~v~~a~~ 192 (222)
+.|.+.|...
T Consensus 512 K~L~adf~~~ 521 (718)
T KOG2416|consen 512 KHLIADFVRA 521 (718)
T ss_pred ceeEeeecch
Confidence 7888888743
No 145
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.06 E-value=0.058 Score=35.10 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=44.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHcc---CCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEA---GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~---G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l 174 (222)
..+|+|+|+. +.+.++++.+|..| .....|..+-|. -|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999996 47778999999998 235678887775 6889999999999999764
No 146
>smart00360 RRM RNA recognition motif.
Probab=95.88 E-value=0.0011 Score=42.60 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=41.0
Q ss_pred cccceeeecCCCCCCCCCCCC-CCCCcccccc---CCCCCCcccccccchhhhhhh-hccCCCcccCCC
Q 027505 18 LYNLQAITQIPTNHLPSLFKT-KSPKPLKLEK---AQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDS 81 (222)
Q Consensus 18 ~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~---~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~ 81 (222)
|+||+..+ +.+.|...|.. .+.....+.. .+.++|+|||+|.+.+.+..+ ..+++..+.++.
T Consensus 1 i~~l~~~~--~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~ 67 (71)
T smart00360 1 VGNLPPDV--TEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP 67 (71)
T ss_pred CCCCCccc--CHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE
Confidence 45777775 66667766643 2322232222 257789999999999999988 566767666543
No 147
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.79 E-value=0.0031 Score=60.02 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=66.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
.....+||+|||+..+++.+|+..|..+|.|.+|.|-..+ -+...-|||+.|.+-..+-.|+..+.+..|..| .+++-
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g-~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG-THRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccC-ccccc
Confidence 3456799999999999999999999999999999886654 344556999999999999999998988888333 45555
Q ss_pred Eecc
Q 027505 189 LIEP 192 (222)
Q Consensus 189 ~a~~ 192 (222)
+..+
T Consensus 447 lG~~ 450 (975)
T KOG0112|consen 447 LGQP 450 (975)
T ss_pred cccc
Confidence 5543
No 148
>smart00361 RRM_1 RNA recognition motif.
Probab=95.77 E-value=0.0037 Score=41.55 Aligned_cols=33 Identities=6% Similarity=-0.087 Sum_probs=28.9
Q ss_pred CCCCCcccccccchhhhhhh-hccCCCcccCCCC
Q 027505 50 QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQ 82 (222)
Q Consensus 50 ~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~ 82 (222)
+.++|||||.|.++++|..| ..++|..++++..
T Consensus 34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l 67 (70)
T smart00361 34 NHKRGNVYITFERSEDAARAIVDLNGRYFDGRTV 67 (70)
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 57899999999999999998 7789998887654
No 149
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.68 E-value=0.024 Score=44.94 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=49.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHc-cCCe---eEEEEeecCCC--CCcccEEEEEECCHHHHHHHHHHhCCCeecCCc-
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAE-AGTV---ASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI- 183 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~-~G~i---~~~~l~~d~~t--g~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr- 183 (222)
...+|.|++||+..|++++.+.+.. ++.- ..+.-...... ...-.-|||.|.+.+++..-...++|..+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999998886665 5544 33331122211 123456899999999999999999998875554
Q ss_pred ---EEEEEEe
Q 027505 184 ---CIAIVLI 190 (222)
Q Consensus 184 ---~i~v~~a 190 (222)
+-.|++|
T Consensus 86 ~~~~~~VE~A 95 (176)
T PF03467_consen 86 NEYPAVVEFA 95 (176)
T ss_dssp -EEEEEEEE-
T ss_pred CCcceeEEEc
Confidence 3355555
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.10 E-value=0.044 Score=47.96 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=59.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCC---CCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~t---g~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
..|-|.||.+.++.++++.+|+-.|.|..+.|+..... ....-.|||-|.+...+..|-- |.++.++ ++-|.|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfv-draliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFV-DRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceee-eeeEEEE
Confidence 47999999999999999999999999999988764322 2346689999999999988876 6777763 6655554
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=94.89 E-value=0.017 Score=47.74 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=53.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCCCC-CC--ccccccC-CCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTKS-PK--PLKLEKA-QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~p-~~--~~~l~~~-~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
-++++|+.|.. +.+.+..+|..+. +. .+..... +.++||+||+|.+.+.+..+..+++..+.++...+
T Consensus 103 sv~v~nvd~~~--t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 103 SVWVGNVDFLV--TLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred eEEEecccccc--ccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 57899999997 8888999997653 22 2222222 56999999999999999999889999999877655
No 152
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.89 E-value=0.005 Score=48.47 Aligned_cols=69 Identities=6% Similarity=0.039 Sum_probs=57.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
..||.||+|.. ++-.+-.-|.. ..+.-++|..+ |.|+||+|.-|.+.+..-.| ..++|..+.++.+.+.
T Consensus 37 ~Iyiggl~~~L--tEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 37 YIYIGGLPYEL--TEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred EEEECCCcccc--cCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 67899999996 88888888855 56677778776 99999999999999887777 8899999999877653
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.56 E-value=0.0021 Score=56.48 Aligned_cols=146 Identities=17% Similarity=0.221 Sum_probs=99.6
Q ss_pred hcccceeeecCCCCCCCCCCCCC-CCCccccccCCCCCCcccccccchhhhhhh-hccCCC-cccCCCCCCcchhhhhhH
Q 027505 17 KLYNLQAITQIPTNHLPSLFKTK-SPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGF-QVTEDSQDEPETEQEEEE 93 (222)
Q Consensus 17 ~~~nlsf~t~~~~~~l~~~f~~~-p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~-~~~~~~~~~~~~~~~~~~ 93 (222)
++.||+-.- ++..|.+.|..- -+-... ...-.||+||-+++..-+.++ ..+.+. ++.+...+.+..-....
T Consensus 5 yignL~p~~--~psdl~svfg~ak~~~~g~---fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq- 78 (584)
T KOG2193|consen 5 YIGNLSPQV--TPSDLESVFGDAKIPGSGQ---FLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ- 78 (584)
T ss_pred cccccCCCC--ChHHHHHHhccccCCCCcc---eeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH-
Confidence 467888875 777888888542 111110 023358999999998887777 444443 34554444322221111
Q ss_pred HHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEee-cCCCCCcccEEEEEECCHHHHHHHHH
Q 027505 94 EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY-DRVTDRSRGFGFVTMGSVEEAKEAIR 172 (222)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~-d~~tg~~rG~aFV~f~~~~~a~~Al~ 172 (222)
..+++-|+|+|+...++.|..++.+||.+..|..+. +.. .-.--|+|...+.++.|+.
T Consensus 79 -----------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~ 137 (584)
T KOG2193|consen 79 -----------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIH 137 (584)
T ss_pred -----------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHH
Confidence 123478999999999999999999999998886533 321 2233467889999999999
Q ss_pred HhCCCeecCCcEEEEEEe
Q 027505 173 LFDGSVSADGICIAIVLI 190 (222)
Q Consensus 173 ~l~g~~~~~gr~i~v~~a 190 (222)
.++|..+ ....+++.|-
T Consensus 138 kl~g~Q~-en~~~k~~Yi 154 (584)
T KOG2193|consen 138 KLNGPQL-ENQHLKVGYI 154 (584)
T ss_pred hhcchHh-hhhhhhcccC
Confidence 9999998 7888888765
No 154
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.07 E-value=0.035 Score=49.62 Aligned_cols=72 Identities=25% Similarity=0.368 Sum_probs=58.2
Q ss_pred CEEEEcCCCCCC-CHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 113 ARLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 113 ~~ifV~nLp~~~-t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
+.+-+.-.|+.. +.++|..+|.+||.|..|.+-+. ---|.|+|.+..+|..|.. ..+..| ++|.|+|.|-.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avl-nnr~iKl~whn 444 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVL-NNRFIKLFWHN 444 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-ccccee-cCceeEEEEec
Confidence 344455556664 55899999999999999987554 2368999999999988877 688888 99999999998
Q ss_pred c
Q 027505 192 P 192 (222)
Q Consensus 192 ~ 192 (222)
|
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 7
No 155
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.97 E-value=0.37 Score=33.27 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=42.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g 176 (222)
..+..+|. .|..+...||.++|+.||.|.=-.| -| .-|||...+.+.+..++..+.-
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 45667776 9999999999999999999754333 33 3899999999999999987753
No 156
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.91 E-value=0.12 Score=47.16 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=61.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHc-cCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee--cCC-cEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS--ADG-ICIA 186 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~-~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~--~~g-r~i~ 186 (222)
..+++.|.|+|...|...|.+.-.+ .|.-..+.++.|..+..+.|||||.|.+.+.+..+.+..||+.+ +++ +.+.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 3456777788877776666555333 56677789999988888999999999999999999999999864 133 3456
Q ss_pred EEEecc
Q 027505 187 IVLIEP 192 (222)
Q Consensus 187 v~~a~~ 192 (222)
+.||+-
T Consensus 467 itYArI 472 (549)
T KOG4660|consen 467 ITYARI 472 (549)
T ss_pred eehhhh
Confidence 677744
No 157
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.30 E-value=0.68 Score=35.27 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=55.4
Q ss_pred CCCCCEEEEcCCCCCCC-HHHHH---HHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE
Q 027505 109 SDEAARLYVGNLPYSMT-SSSLA---EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC 184 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t-~~~L~---~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~ 184 (222)
...-.+|.|+=|..... .+||+ ..++.||+|.++.+. | |--|.|.|.+..+|=+|+..++... .|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~--pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRA--PGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCC--CCce
Confidence 33456788876666543 24554 456789999998763 2 4589999999999999999888755 5888
Q ss_pred EEEEEecc
Q 027505 185 IAIVLIEP 192 (222)
Q Consensus 185 i~v~~a~~ 192 (222)
+.+.|-.+
T Consensus 154 ~qCsWqqr 161 (166)
T PF15023_consen 154 FQCSWQQR 161 (166)
T ss_pred EEeecccc
Confidence 88887654
No 158
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=93.06 E-value=0.0084 Score=38.67 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=43.2
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCC
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTED 80 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~ 80 (222)
.+|+||+..+ +.+.+...|.. .++....+... ..++|++||.|.+.+.+..+ ..+++..+.++
T Consensus 2 i~i~~l~~~~--~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 2 LFVGNLPPDV--TEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred EEEeCCCCcc--CHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3588999987 77777777744 33333333332 24689999999999999988 55666655543
No 159
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.01 E-value=1.5 Score=31.93 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=47.6
Q ss_pred CEEEE-cCCCCCCCHHHHHHHHHcc-CCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 113 ARLYV-GNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 113 ~~ifV-~nLp~~~t~~~L~~~F~~~-G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
..+.| ...|+.++.++|..+.+.+ ..|..++|++|. ..++=.+.+.|.+...|..-.+.+||+.+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34444 4455555666676555555 357889998874 34666789999999999999999999987
No 160
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.97 E-value=0.019 Score=41.26 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=55.0
Q ss_pred hcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 17 KLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 17 ~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
||.||+|+- |.+..-..|.. .++.-+++.....-+|-+||.|++..+|.+| .-+.|+.++.+...+-
T Consensus 22 yirNLp~~I--TseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 22 YIRNLPFKI--TSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred EEecCCccc--cHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 688999996 88888888844 6666667766667789999999999999999 8899999998876553
No 161
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.87 E-value=0.41 Score=38.18 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=44.9
Q ss_pred CHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC--CCeecCCcEEEEEEeccC
Q 027505 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSVSADGICIAIVLIEPF 193 (222)
Q Consensus 125 t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~--g~~~~~gr~i~v~~a~~~ 193 (222)
....|+++|..|+.+......+.. +-..|.|.+.+.|.+|...|+ +..+ .|..+++.++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~-~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSF-NGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEE-TTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhccccccc-CCCceEEEEcccc
Confidence 347899999999998887665542 567899999999999999999 8999 8999999988653
No 162
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=92.86 E-value=0.04 Score=44.20 Aligned_cols=42 Identities=7% Similarity=0.207 Sum_probs=33.5
Q ss_pred CccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCC
Q 027505 42 KPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQD 83 (222)
Q Consensus 42 ~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~ 83 (222)
.-.+|... |.|+|||||+|.+++.|..+ ..|++|-+-++-..
T Consensus 78 ~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 78 TRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred EEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 34455443 99999999999999999988 88899988776543
No 163
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=92.84 E-value=0.017 Score=43.39 Aligned_cols=71 Identities=8% Similarity=-0.005 Sum_probs=55.7
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.++-=.+ +++.++..|.. .++|-+.|+.+ +..+||++|+|.+..+|+.| .+++|.++-+....+...
T Consensus 74 Ii~VtgvHeEa--tEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 74 IIFVTGVHEEA--TEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEEeccCcch--hHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45677777776 78888888844 67777666665 88899999999999999999 888999988887766443
No 164
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.75 E-value=0.22 Score=45.61 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=54.5
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHHc--cCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC--CeecC
Q 027505 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAE--AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG--SVSAD 181 (222)
Q Consensus 106 ~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~--~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g--~~~~~ 181 (222)
.......+.|.++-||..+-.++++.+|.. +-++.+|.+-.+. -=||+|++..+|+.|.+.|.. ..| -
T Consensus 169 Vrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~f-q 240 (684)
T KOG2591|consen 169 VRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTF-Q 240 (684)
T ss_pred cccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhh-c
Confidence 334445677888999999999999999975 6678888876653 458999999999999875542 233 4
Q ss_pred CcEEE
Q 027505 182 GICIA 186 (222)
Q Consensus 182 gr~i~ 186 (222)
|++|.
T Consensus 241 gKpIm 245 (684)
T KOG2591|consen 241 GKPIM 245 (684)
T ss_pred Ccchh
Confidence 55543
No 165
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.75 E-value=0.012 Score=51.41 Aligned_cols=133 Identities=12% Similarity=0.033 Sum_probs=80.0
Q ss_pred CCcccccccchhhhhhhhccCCCcccCCCCCCcchhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHH
Q 027505 53 SALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEV 132 (222)
Q Consensus 53 ~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~ 132 (222)
--|+|++|.+...++-.+..+|.-....+...... .....-+...-........-.....+++|++|+..+-..++-+.
T Consensus 93 ~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh-~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~ 171 (479)
T KOG4676|consen 93 DRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINH-SPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGES 171 (479)
T ss_pred cHHHHHhcCcccccccccCCCCccCCCCccccccC-CccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhh
Confidence 34688888888877777777775544443321100 00000000000000000000112367999999999999999999
Q ss_pred HHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 133 FAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 133 F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
|..+|+|...++. .|-..-+|-++|....+...|+. ++|..+ .-........+|
T Consensus 172 f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~-k~qhsr~ai~kP 225 (479)
T KOG4676|consen 172 FERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRER-KRQHSRRAIIKP 225 (479)
T ss_pred hhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhh-hhhhhhhhhcCc
Confidence 9999999887653 34455678899999999999998 677776 333334444444
No 166
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.70 E-value=1.2 Score=29.29 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 123 ~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
.++-++++..+..|+- ..| ..|+ .|| ||.|.+..+|+++....+|..+ .+.+|.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~-f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-----TGF-YIVFNDSKEAERCFRAEDGTLF-FTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-----CEE-EEEECChHHHHHHHHhcCCCEE-EEEEEE
Confidence 3577899999999964 333 3444 233 8899999999999999999988 455554
No 167
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.07 Score=43.37 Aligned_cols=55 Identities=7% Similarity=-0.005 Sum_probs=39.1
Q ss_pred CCCCCC-CCCCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 31 HLPSLF-KTKSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 31 ~l~~~f-~~~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
-|...| |-..++.+.++.+ .+.||||||+|...++|..| ..+++.++-++.+.+.
T Consensus 26 vLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 26 VLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred HHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 344444 2234444444443 78999999999999998888 8889988888866543
No 168
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.05 E-value=0.17 Score=47.18 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=59.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
.....++||+|+...+..+-++.+...+|.|.++.... |||+.|........|+..++-..+ +|..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~-~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNI-DDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCC-Ccchhhcc
Confidence 34556899999999999999999999999988775432 999999999999999998888887 77766554
Q ss_pred E
Q 027505 189 L 189 (222)
Q Consensus 189 ~ 189 (222)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 169
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.55 E-value=2 Score=28.74 Aligned_cols=59 Identities=15% Similarity=0.292 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHccCC-----eeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 122 YSMTSSSLAEVFAEAGT-----VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 122 ~~~t~~~L~~~F~~~G~-----i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++..+|..++...+. |-.+++.. -|+||+-.. +.++.++..|++..+ .|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~-~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKI-KGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--S-SS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCC-CCeeEEEEEC
Confidence 35788888888887654 44566643 389998875 488899999999999 8999999875
No 170
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=86.03 E-value=0.18 Score=31.53 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=26.0
Q ss_pred CCcccccccchhhhhhh-hccCCCcccCCCC
Q 027505 53 SALHLSLLSLSYFRQFS-ASFDGFQVTEDSQ 82 (222)
Q Consensus 53 ~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~ 82 (222)
++++||+|.+.++|..+ ..+++..+.++..
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l 51 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPL 51 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 69999999999999999 6789988877654
No 171
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.57 E-value=2.9 Score=35.71 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=48.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc-EEEEEE
Q 027505 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI-CIAIVL 189 (222)
Q Consensus 114 ~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr-~i~v~~ 189 (222)
=|-|=+.|+.-. .-|..+|.+||.|.+.... ..--+-+|.|.+.-+|.+||. -||..| +|. .|-|..
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii-~g~vmiGVkp 266 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTII-DGDVMIGVKP 266 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeee-ccceEEeeee
Confidence 344556766543 4567889999999876543 233489999999999999999 499988 564 344444
No 172
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=81.14 E-value=5.7 Score=33.76 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=36.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCe-eEEEEeecCCCCCcccEEEEEECCH
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSV 164 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i-~~~~l~~d~~tg~~rG~aFV~f~~~ 164 (222)
...-|+++||+.++.-.||+..+.+.|.+ .++.. ..++|-||..|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 34569999999999999999999987753 23322 23578899999654
No 173
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=80.10 E-value=1.4 Score=42.46 Aligned_cols=74 Identities=28% Similarity=0.317 Sum_probs=58.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee-cCCcEEEEEEeccC
Q 027505 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS-ADGICIAIVLIEPF 193 (222)
Q Consensus 115 ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~-~~gr~i~v~~a~~~ 193 (222)
.++.|.+-..+..-|..+|.+||.|.+++..++. -.|.|+|.+.+.|-.|+..++|.+. .-|-+.+|.+|++-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444455566777899999999999999887765 4899999999999999999999865 23667888888763
Q ss_pred C
Q 027505 194 N 194 (222)
Q Consensus 194 ~ 194 (222)
.
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 3
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.94 E-value=8.5 Score=34.73 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=56.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHcc-CCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~-G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
...|+|=.+|-..+--||-.|+..+ -.|.++++++|. -.++=...|.|.+.++|..-.+.+||..+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 6789999999999999999998876 458999999963 23344579999999999999999999987
No 175
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=79.28 E-value=0.26 Score=44.22 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=47.7
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
.||.||++.+ +...|.+-|.. .+++...+... +....||||+|.+...++.+.......+.++...+
T Consensus 291 i~V~nlP~da--~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~V 361 (419)
T KOG0116|consen 291 IFVKNLPPDA--TPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNV 361 (419)
T ss_pred eEeecCCCCC--CHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEE
Confidence 6899999998 77778887744 56555544432 33349999999999998888555555566655544
No 176
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.19 E-value=6.7 Score=34.90 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCC-eeEEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~-i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~ 172 (222)
-.+.|=|-++|.....+||...|..|+. -.+|..+-|. .||..|.+...|..|+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 4567889999999999999999999965 5677777664 89999999999999998
No 177
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=70.93 E-value=0.93 Score=37.71 Aligned_cols=71 Identities=11% Similarity=0.000 Sum_probs=55.0
Q ss_pred chhhhhcccceeeecCCCCCCCCCCCCC-CCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 12 SSLCNKLYNLQAITQIPTNHLPSLFKTK-SPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 12 ~~~~~~~~nlsf~t~~~~~~l~~~f~~~-p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
-+....|+||.+.. +++.|.++|..- +++-..++.. +.|.|-|-|.|+..++|..+ ..+++..+++..+..
T Consensus 82 ~~~~v~v~NL~~~V--~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGV--IDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred CcceeeeecCCcCc--chHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 34445699999998 888999999653 5444444443 88899999999999888877 888999899987544
No 178
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.56 E-value=38 Score=31.71 Aligned_cols=71 Identities=25% Similarity=0.310 Sum_probs=54.9
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHcc----CCeeEEEEeecC----------CCCC---------------------
Q 027505 109 SDEAARLYVGNLPYS-MTSSSLAEVFAEA----GTVASAEIVYDR----------VTDR--------------------- 152 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~-~t~~~L~~~F~~~----G~i~~~~l~~d~----------~tg~--------------------- 152 (222)
....++|-|-|+.|+ +..++|..+|..| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 556789999999998 6778999998866 578888764421 1111
Q ss_pred ---------------c-ccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 153 ---------------S-RGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 153 ---------------~-rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
- -=||.|+|.+...|.+..+..+|..+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~Ef 293 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEF 293 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCccee
Confidence 0 12689999999999999999999988
No 179
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=58.68 E-value=4.4 Score=33.89 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=72.3
Q ss_pred CEEEEcCCCCCCCHHH-H--HHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 113 ARLYVGNLPYSMTSSS-L--AEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~-L--~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...+++++-..+..+- | ...|+.|-.+....++++. -+..++++|+.|.......++...-+++.+ +.+.+++.-
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki-~~~~VR~a~ 174 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI-GKPPVRLAA 174 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc-cCcceeecc
Confidence 4566677666655544 3 6678877777777787776 788999999999998888888876677776 555555543
Q ss_pred ----eccCCCCCCCCCceeEEecCCcCcccccc
Q 027505 190 ----IEPFNCQHFGNGRCLVFLSYIILDVHSIH 218 (222)
Q Consensus 190 ----a~~~~~~~~~~~r~~l~vgnl~~~v~~~~ 218 (222)
.+|.. .-+......||-|.|.-+|.+-|
T Consensus 175 gtswedPsl-~ew~~~DfRIfcgdlgNevnd~v 206 (290)
T KOG0226|consen 175 GTSWEDPSL-AEWDEDDFRIFCGDLGNEVNDDV 206 (290)
T ss_pred ccccCCccc-ccCccccceeecccccccccHHH
Confidence 23322 23345667899999998887655
No 180
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=55.42 E-value=35 Score=24.99 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=28.0
Q ss_pred CHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEEC-CHHHHHHHHH
Q 027505 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG-SVEEAKEAIR 172 (222)
Q Consensus 125 t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~-~~~~a~~Al~ 172 (222)
+.+.|++.|..|..++ ++...++ ..++|++.|.|. +-.-...|++
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4578999999998875 4455554 367899999996 5555566655
No 181
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=53.12 E-value=31 Score=24.00 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=34.6
Q ss_pred EEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEeccCC------CCCCCCCceeEEecCCcC
Q 027505 157 GFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFN------CQHFGNGRCLVFLSYIIL 212 (222)
Q Consensus 157 aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~~------~~~~~~~r~~l~vgnl~~ 212 (222)
|.|+|.++.-|++-++.=....-+++..+.|....-.. ....+-.+++|-|.|||-
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~ 62 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPD 62 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCC
Confidence 67999999999999883222222356655555432211 112344677788999986
No 182
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=52.37 E-value=29 Score=29.72 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=55.8
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecC-------CCCCcccEEEEEECCHHHHHHH----HHHh
Q 027505 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-------VTDRSRGFGFVTMGSVEEAKEA----IRLF 174 (222)
Q Consensus 106 ~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~-------~tg~~rG~aFV~f~~~~~a~~A----l~~l 174 (222)
+.+....+.+...|+..+++--.+-..|-+||+|++|.++.+. ...+......+.|-+.+.+-.- ++.|
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 3344456678889999888888888889999999999998764 1123345677888887776432 3333
Q ss_pred CC--CeecCCcEEEEEEe
Q 027505 175 DG--SVSADGICIAIVLI 190 (222)
Q Consensus 175 ~g--~~~~~gr~i~v~~a 190 (222)
.. ..+ ....|.+.+.
T Consensus 89 sEfK~~L-~S~~L~lsFV 105 (309)
T PF10567_consen 89 SEFKTKL-KSESLTLSFV 105 (309)
T ss_pred HHHHHhc-CCcceeEEEE
Confidence 21 233 4555666544
No 183
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=50.55 E-value=41 Score=21.81 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=15.1
Q ss_pred HHHHHHHHccCCeeEEEE
Q 027505 127 SSLAEVFAEAGTVASAEI 144 (222)
Q Consensus 127 ~~L~~~F~~~G~i~~~~l 144 (222)
.+|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999876654
No 184
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=44.85 E-value=41 Score=22.28 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=38.8
Q ss_pred HHHHHHHHccC-CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 127 SSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 127 ~~L~~~F~~~G-~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+++++.|..+| ++..+.-+..+.++.+--.-+|+.....+... .|+=..+ +|+++.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~L-g~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTL-GGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhh-CCeeEEEecC
Confidence 46778888888 58888888877666666667777765433333 2333445 6777666643
No 185
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=41.96 E-value=57 Score=21.40 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=40.6
Q ss_pred HHHHHHHHccC-CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 127 SSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 127 ~~L~~~F~~~G-~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
+++++.|...| +|..+.-+..+.+++.--.-||+.....+...+ ++=..+ ++.++.|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l-~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTL-CGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhh-CCeEEEEecCCC
Confidence 46777788777 578887777765667777788888766554443 333445 677666665443
No 186
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=40.47 E-value=40 Score=29.84 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=49.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-eeEEEEeecCCC--CCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC 184 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~-i~~~~l~~d~~t--g~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~ 184 (222)
..+|.|.+||+..++.+|.+....+-. +....+.....+ ..-.+.+||.|...++...-.+.++|+.+++.+-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 457889999999999988876665421 222222211111 1226778999999999888888888888866544
No 187
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=39.40 E-value=45 Score=28.41 Aligned_cols=48 Identities=17% Similarity=0.389 Sum_probs=32.4
Q ss_pred CCEEEEcCCCCC------------CCHHHHHHHHHccCCeeEEEEee-c----CCCCCcccEEEE
Q 027505 112 AARLYVGNLPYS------------MTSSSLAEVFAEAGTVASAEIVY-D----RVTDRSRGFGFV 159 (222)
Q Consensus 112 ~~~ifV~nLp~~------------~t~~~L~~~F~~~G~i~~~~l~~-d----~~tg~~rG~aFV 159 (222)
..+|++.+||-. .+++.|+..|..||.|..+.|+. | .-+|+..|.-|-
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~ 213 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFH 213 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceee
Confidence 457777777643 46778999999999998887654 2 134555444433
No 188
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=38.94 E-value=13 Score=23.41 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=20.5
Q ss_pred cccEEEEEECC-HHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 153 SRGFGFVTMGS-VEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 153 ~rG~aFV~f~~-~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
.+|||||...+ ..+.--.-..|++.. +|-++.|....+
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~--~gD~V~v~i~~~ 45 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAM--DGDKVLVRITPP 45 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS---TT-EEEEEEEES
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCC--CCCEEEEEEecC
Confidence 57999999886 222222234455544 566777776653
No 189
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=38.69 E-value=1.2e+02 Score=22.70 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=36.8
Q ss_pred ccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEeccCCCCCCCCCceeEEecCCc
Q 027505 154 RGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFNCQHFGNGRCLVFLSYII 211 (222)
Q Consensus 154 rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~~~~~~~~~r~~l~vgnl~ 211 (222)
.-+-++.+.+.. ...++..+.+..+ .|+++.|..-..-.. -.+.+.|||++-.
T Consensus 26 ~~~~icv~g~~~-~~~~L~~l~~~~~-~~~~i~v~~~~~~~~---~~~C~ilyi~~~~ 78 (145)
T PF13689_consen 26 SPFRICVLGDDP-FAEALSTLAGKQV-GGRPIRVRRLSSPNE---ISGCHILYISSSE 78 (145)
T ss_pred CCeEEEEECChH-HHHHHHHhhhccc-CCCcEEEEECCCCcc---cccccEEEECCCC
Confidence 446677777665 5567888988988 899999885432111 2577888888644
No 190
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=38.47 E-value=43 Score=28.64 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.6
Q ss_pred EEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEeccCC
Q 027505 157 GFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 157 aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
|||+|++..+|..|++.+.... ++.+.+..|.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~---~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR---PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC---CCCceEeeCCCcc
Confidence 7999999999999999655543 4556777775544
No 191
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=38.02 E-value=1.2e+02 Score=21.66 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHc-cCCeeEEEEe----ecCCCCCcccEEEEEECCHHHHHH
Q 027505 123 SMTSSSLAEVFAE-AGTVASAEIV----YDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 123 ~~t~~~L~~~F~~-~G~i~~~~l~----~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
..+..+|++-+.+ |+.=.+..++ .....|++.|||.| |.+.+.+++
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 4567777766653 6632233222 23345678899987 777776654
No 192
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=36.29 E-value=36 Score=27.08 Aligned_cols=76 Identities=11% Similarity=0.118 Sum_probs=51.3
Q ss_pred CCEEEEcCCCCCCCH-----HHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc-EE
Q 027505 112 AARLYVGNLPYSMTS-----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI-CI 185 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~-----~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr-~i 185 (222)
...+.+.+++..+.. .....+|.+|.+.....+.+ +.+.--|.|.+...+..|...+++..+ .|+ .+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f-~~~~~~ 82 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSF-NGKNEL 82 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhccc-CCCceE
Confidence 445677777766432 23455666665544433332 234556789999999999999999999 676 78
Q ss_pred EEEEeccCC
Q 027505 186 AIVLIEPFN 194 (222)
Q Consensus 186 ~v~~a~~~~ 194 (222)
..-++++..
T Consensus 83 k~yfaQ~~~ 91 (193)
T KOG4019|consen 83 KLYFAQPGH 91 (193)
T ss_pred EEEEccCCC
Confidence 888887643
No 193
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=35.05 E-value=5.7 Score=36.73 Aligned_cols=69 Identities=13% Similarity=0.068 Sum_probs=52.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
..+.+|++|+++.++-++|..++..+--...+.+..+....+..-++.|+|+---....|+..||+..+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 356799999999999999999999886555554433322234456788999888888888888888766
No 194
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=33.70 E-value=1.7e+02 Score=21.64 Aligned_cols=46 Identities=26% Similarity=0.283 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHc-cCC----eeEEEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 123 SMTSSSLAEVFAE-AGT----VASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 123 ~~t~~~L~~~F~~-~G~----i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
.++.++|++-+.+ |-. |.-..+-....+|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 3677888877665 322 222234444567899999987 676666543
No 195
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=33.47 E-value=20 Score=31.42 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=44.9
Q ss_pred chhhhhcccceeeecCCCCCCCCCCCC------CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCC
Q 027505 12 SSLCNKLYNLQAITQIPTNHLPSLFKT------KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQ 82 (222)
Q Consensus 12 ~~~~~~~~nlsf~t~~~~~~l~~~f~~------~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~ 82 (222)
.-+|-+|.||-|-| |++.|-+...+ ...|-+.--..+.|+||+++...+...+++- .-+....+-+..-
T Consensus 79 rk~~~YvGNL~W~T--TD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYT--TDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred ceEEEEecceeEEe--ccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 34578899999999 88877655433 1122222223389999999999988877765 4445555555543
No 196
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=33.38 E-value=1e+02 Score=27.89 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=31.3
Q ss_pred cccCCCCCCEEEEcCCCCC-CCHHHHHHHHHcc----CCeeEEEEe
Q 027505 105 KVAASDEAARLYVGNLPYS-MTSSSLAEVFAEA----GTVASAEIV 145 (222)
Q Consensus 105 ~~~~~~~~~~ifV~nLp~~-~t~~~L~~~F~~~----G~i~~~~l~ 145 (222)
.+......++|-|-|+.|+ +...+|...|+.| |.|..+.|.
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 4455667888999999998 6778898888865 667777654
No 197
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.66 E-value=16 Score=32.04 Aligned_cols=70 Identities=7% Similarity=0.049 Sum_probs=49.5
Q ss_pred hcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 17 KLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 17 ~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
||--|+--| +.+.|...|.. .++........ +.|--|+||+|...+....| -.++..-++.+.+-+...+
T Consensus 243 FVCKLNPVT--tDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 243 FVCKLNPVT--TDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred EEEecCCcc--cccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 455677777 88888777754 34444433333 78889999999999988888 7888888887766554443
No 198
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.28 E-value=1.2e+02 Score=21.02 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=31.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEEC
Q 027505 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162 (222)
Q Consensus 114 ~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~ 162 (222)
-|||||++..+.+.-...+.+..+.-..+-+-.+ ....||+|-+..
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 5999999998887766666665554444433332 237799998773
No 199
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=30.89 E-value=6.6 Score=36.58 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=47.7
Q ss_pred hhcccceeeecCCCCCCCCCCCC--CC--CCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT--KS--PKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~--~p--~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
.+|+.||-+|.. ..|..+|.. +. .+.+.-...+-.+.||||+.++..+|.++ .-+...++-++-+.+....
T Consensus 408 lWVSGLSstTRA--tDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 408 LWVSGLSSTTRA--TDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred eeeeccccchhh--hHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 458888888843 346677754 11 12211111245678999999999999998 7888888888877665443
No 200
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=28.62 E-value=2.1e+02 Score=21.53 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHc-cC-CeeEE----EEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 123 SMTSSSLAEVFAE-AG-TVASA----EIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 123 ~~t~~~L~~~F~~-~G-~i~~~----~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
..+..+|++-+.+ |+ .=.+. .+......|++.|||.| |.+.+.+.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4577888777664 55 21222 23333456788999987 777766544
No 201
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=28.54 E-value=70 Score=26.97 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=27.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeec
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d 147 (222)
....|+||||.++..-+..++...-.+....++..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 45669999999999999999887656656665554
No 202
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=27.68 E-value=1.2e+02 Score=21.60 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECC
Q 027505 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS 163 (222)
Q Consensus 114 ~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~ 163 (222)
-||||+++..+.+.-...+-+.++.-.-+ ++.. +..-.||+|-++.+
T Consensus 29 GVyVg~~S~rVRd~lW~~v~~~~~~G~av-mv~~--~~~eqG~~~~t~G~ 75 (97)
T PRK11558 29 GVYVGDVSRRIREMIWQQVTQLAEEGNVV-MAWA--TNTESGFEFQTFGE 75 (97)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCcEE-EEEc--CCCCCCcEEEecCC
Confidence 59999998888776555555555543333 3332 23344999988765
No 203
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.66 E-value=1.1e+02 Score=20.77 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=22.1
Q ss_pred CcccEEEEEECCHHHHHHHHHHhCCCe
Q 027505 152 RSRGFGFVTMGSVEEAKEAIRLFDGSV 178 (222)
Q Consensus 152 ~~rG~aFV~f~~~~~a~~Al~~l~g~~ 178 (222)
..+||=|||=.+..++..|++.+.+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 368999999999999999998766543
No 204
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=27.49 E-value=2.1e+02 Score=19.58 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHc-cCC----eeEEEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 123 SMTSSSLAEVFAE-AGT----VASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 123 ~~t~~~L~~~F~~-~G~----i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
..+..+|++-+.+ |+. |.--.+......+.+.|||.| |.+.+.+++
T Consensus 12 Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 12 TPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp S--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 4566777766654 442 222344455556778999987 888777764
No 205
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=24.93 E-value=22 Score=31.13 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=37.7
Q ss_pred HHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Q 027505 126 SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177 (222)
Q Consensus 126 ~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~ 177 (222)
...+.+++.+.|.|..-.+.+- -+-|.+|+..-.+++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3567788888998876555443 25689999999999999999998875
No 206
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=24.29 E-value=36 Score=31.83 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=27.9
Q ss_pred CCCCCcccccccchhhhhhh-hccCCCcccCC
Q 027505 50 QNPSALHLSLLSLSYFRQFS-ASFDGFQVTED 80 (222)
Q Consensus 50 ~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~ 80 (222)
+...||.|++|.+..+|+.+ ..++|+.++..
T Consensus 102 ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 102 GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 56899999999999999998 99999998764
No 207
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.75 E-value=34 Score=30.58 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCEEEEcCCCCCCCHH--------HHHHHHHc--cCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q 027505 112 AARLYVGNLPYSMTSS--------SLAEVFAE--AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~--------~L~~~F~~--~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al 171 (222)
.+.+|+.+.......+ ++...|.. ++.+..+++.++.....++|--|++|.....++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 3457777776665444 89999998 678888998888777889999999999999999986
No 208
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=21.29 E-value=1.9e+02 Score=19.80 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=20.0
Q ss_pred CeeEEEEeecCCCCCcccEEEEEECC
Q 027505 138 TVASAEIVYDRVTDRSRGFGFVTMGS 163 (222)
Q Consensus 138 ~i~~~~l~~d~~tg~~rG~aFV~f~~ 163 (222)
+|.++++..-...|+-+|||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36777777666568999999999875
No 209
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=20.79 E-value=1.1e+02 Score=22.76 Aligned_cols=83 Identities=12% Similarity=-0.029 Sum_probs=54.0
Q ss_pred CCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhhhhhHHHHhhhhcccccccCCCCCCEEEE--cCCCCC-CCHH
Q 027505 51 NPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYV--GNLPYS-MTSS 127 (222)
Q Consensus 51 ~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV--~nLp~~-~t~~ 127 (222)
...++..+.|.+.++...+.......+.+.......=.... ...........+|| .|||.. .+++
T Consensus 53 l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~------------~~~~~~~~~~~vWVri~glP~~~~~~~ 120 (153)
T PF14111_consen 53 LGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDF------------NPSEVKFEHIPVWVRIYGLPLHLWSEE 120 (153)
T ss_pred eCCCeEEEEEEeccceeEEEecccccccccchhhhhhcccc------------cccccceeccchhhhhccCCHHHhhhH
Confidence 45688899999999999998888777776544331111000 00001111223444 699998 5777
Q ss_pred HHHHHHHccCCeeEEEEe
Q 027505 128 SLAEVFAEAGTVASAEIV 145 (222)
Q Consensus 128 ~L~~~F~~~G~i~~~~l~ 145 (222)
-++.+-+.+|.+..+...
T Consensus 121 ~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 121 ILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred HHHHHHHhcCCeEEEEcC
Confidence 889999999999887653
Done!