Query 027505
Match_columns 222
No_of_seqs 254 out of 2179
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 99.9 1.2E-27 4.2E-32 200.9 9.7 172 15-214 24-196 (284)
2 3md3_A Nuclear and cytoplasmic 99.9 1.6E-27 5.4E-32 183.8 6.4 160 16-192 3-166 (166)
3 4f02_A Polyadenylate-binding p 99.9 8.7E-28 3E-32 194.5 4.8 170 6-194 7-182 (213)
4 2qfj_A FBP-interacting repress 99.9 4.3E-27 1.5E-31 189.4 8.4 173 15-195 30-207 (216)
5 2cjk_A Nuclear polyadenylated 99.9 1.7E-27 5.9E-32 184.3 5.5 159 15-194 5-167 (167)
6 1l3k_A Heterogeneous nuclear r 99.9 1.6E-27 5.5E-32 189.1 4.8 168 15-196 15-186 (196)
7 2ghp_A U4/U6 snRNA-associated 99.9 3.2E-27 1.1E-31 199.1 5.1 175 15-216 43-225 (292)
8 2yh0_A Splicing factor U2AF 65 99.9 2.3E-27 7.7E-32 188.5 3.3 178 15-195 6-196 (198)
9 2g4b_A Splicing factor U2AF 65 99.9 6.8E-27 2.3E-31 181.8 3.2 157 15-190 6-171 (172)
10 1b7f_A Protein (SXL-lethal pro 99.9 3.5E-26 1.2E-30 176.9 5.4 157 15-190 5-168 (168)
11 3nmr_A Cugbp ELAV-like family 99.9 9.6E-26 3.3E-30 175.4 5.8 162 14-191 4-175 (175)
12 1fxl_A Paraneoplastic encephal 99.9 6.3E-26 2.1E-30 175.0 4.7 157 15-190 4-167 (167)
13 4f25_A Polyadenylate-binding p 99.9 2.1E-24 7.1E-29 158.5 11.3 102 112-216 5-111 (115)
14 1fje_B Nucleolin RBD12, protei 99.9 6.5E-26 2.2E-30 177.0 2.1 160 13-194 13-175 (175)
15 2ghp_A U4/U6 snRNA-associated 99.9 4.7E-25 1.6E-29 185.8 5.1 168 14-194 118-292 (292)
16 4fxv_A ELAV-like protein 1; RN 99.9 1.4E-23 4.8E-28 150.2 11.9 82 110-192 17-98 (99)
17 2kn4_A Immunoglobulin G-bindin 99.9 4.4E-24 1.5E-28 164.8 8.7 141 50-195 10-152 (158)
18 3pgw_A U1-A; protein-RNA compl 99.9 5.6E-24 1.9E-28 178.4 9.2 169 15-191 11-281 (282)
19 3smz_A Protein raver-1, ribonu 99.9 1.9E-24 6.4E-29 181.4 4.7 164 15-195 97-266 (284)
20 3sde_A Paraspeckle component 1 99.9 1.1E-23 3.9E-28 175.3 5.9 152 15-194 24-180 (261)
21 3tyt_A Heterogeneous nuclear r 99.9 5.1E-24 1.8E-28 171.7 2.0 169 15-190 6-204 (205)
22 1qm9_A Polypyrimidine tract-bi 99.9 2.3E-23 8E-28 165.8 4.8 169 15-193 5-197 (198)
23 3s8s_A Histone-lysine N-methyl 99.9 1E-21 3.4E-26 143.2 12.0 83 111-194 5-87 (110)
24 2lxi_A RNA-binding protein 10; 99.9 1.7E-22 5.8E-27 142.3 7.5 83 112-195 1-85 (91)
25 2adc_A Polypyrimidine tract-bi 99.9 4.7E-23 1.6E-27 168.3 4.6 169 15-193 36-228 (229)
26 4f02_A Polyadenylate-binding p 99.9 6.2E-22 2.1E-26 160.0 10.6 104 111-216 14-117 (213)
27 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.4E-21 8.2E-26 134.6 11.6 82 111-193 5-86 (87)
28 2i2y_A Fusion protein consists 99.9 1.5E-22 5.2E-27 155.0 6.0 137 51-194 11-149 (150)
29 2dnz_A Probable RNA-binding pr 99.9 3.3E-21 1.1E-25 136.2 12.2 88 110-198 3-90 (95)
30 2lkz_A RNA-binding protein 5; 99.9 4.6E-22 1.6E-26 141.3 7.8 82 110-192 7-94 (95)
31 2cq0_A Eukaryotic translation 99.9 2.3E-21 7.7E-26 139.2 11.5 89 108-197 11-99 (103)
32 3md1_A Nuclear and cytoplasmic 99.9 3.3E-21 1.1E-25 132.7 11.7 81 113-194 2-82 (83)
33 1whw_A Hypothetical protein ri 99.9 4.5E-21 1.5E-25 136.5 12.6 87 110-197 6-92 (99)
34 1fxl_A Paraneoplastic encephal 99.9 4.7E-21 1.6E-25 147.5 13.3 101 112-216 2-102 (167)
35 2dgs_A DAZ-associated protein 99.9 4.5E-21 1.5E-25 136.6 12.2 89 108-198 6-94 (99)
36 1b7f_A Protein (SXL-lethal pro 99.9 3.6E-21 1.2E-25 148.6 12.6 102 111-216 2-103 (168)
37 1x5u_A Splicing factor 3B subu 99.9 4E-21 1.4E-25 138.2 11.8 90 107-197 10-99 (105)
38 1p27_B RNA-binding protein 8A; 99.9 4E-21 1.4E-25 138.4 11.6 88 107-195 18-105 (106)
39 2hvz_A Splicing factor, argini 99.9 1.1E-21 3.6E-26 140.4 8.4 93 113-211 1-100 (101)
40 1x5t_A Splicing factor 3B subu 99.9 3E-21 1E-25 136.6 10.6 87 111-198 4-91 (96)
41 1l3k_A Heterogeneous nuclear r 99.9 3.7E-21 1.3E-25 152.3 12.1 106 109-216 10-118 (196)
42 2do4_A Squamous cell carcinoma 99.9 8.8E-21 3E-25 135.3 12.7 87 107-195 12-98 (100)
43 1x5s_A Cold-inducible RNA-bind 99.9 5E-21 1.7E-25 137.0 11.2 89 109-198 9-97 (102)
44 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3.9E-21 1.3E-25 137.6 10.6 89 109-198 9-97 (102)
45 2cpz_A CUG triplet repeat RNA- 99.9 6.7E-21 2.3E-25 139.4 12.1 87 110-197 23-109 (115)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5.5E-21 1.9E-25 132.2 10.8 82 109-191 4-85 (85)
47 3p5t_L Cleavage and polyadenyl 99.9 7.2E-22 2.5E-26 138.6 6.2 82 113-195 2-85 (90)
48 2dgo_A Cytotoxic granule-assoc 99.8 1.6E-20 5.3E-25 137.4 13.4 88 108-196 11-98 (115)
49 2dnm_A SRP46 splicing factor; 99.8 4.2E-21 1.4E-25 137.7 10.2 89 108-197 9-97 (103)
50 2x1f_A MRNA 3'-END-processing 99.8 8E-21 2.7E-25 134.6 11.5 83 112-195 2-84 (96)
51 2dng_A Eukaryotic translation 99.8 1.1E-20 3.7E-25 135.6 12.1 88 108-198 11-98 (103)
52 1oo0_B CG8781-PA, drosophila Y 99.8 7.6E-21 2.6E-25 138.0 11.3 88 107-195 21-108 (110)
53 3md3_A Nuclear and cytoplasmic 99.8 8.8E-21 3E-25 145.8 12.3 101 113-216 1-101 (166)
54 1x4h_A RNA-binding protein 28; 99.8 1.3E-20 4.4E-25 136.8 12.4 89 107-196 10-104 (111)
55 2cph_A RNA binding motif prote 99.8 1.2E-20 4.1E-25 136.1 11.9 89 108-197 11-101 (107)
56 2dnh_A Bruno-like 5, RNA bindi 99.8 1.7E-20 5.6E-25 135.0 12.6 86 110-197 13-101 (105)
57 2jwn_A Embryonic polyadenylate 99.8 2.4E-20 8.2E-25 138.1 13.4 86 112-199 36-121 (124)
58 3ns6_A Eukaryotic translation 99.8 1.6E-21 5.6E-26 139.5 6.7 83 111-194 5-94 (100)
59 2la6_A RNA-binding protein FUS 99.8 1.3E-20 4.3E-25 134.4 11.2 85 106-191 7-99 (99)
60 2cpf_A RNA binding motif prote 99.8 1.2E-20 4.1E-25 134.1 11.0 86 110-196 3-91 (98)
61 1u6f_A Tcubp1, RNA-binding pro 99.8 2.2E-20 7.5E-25 141.0 12.9 88 108-196 38-125 (139)
62 2cqc_A Arginine/serine-rich sp 99.8 1.5E-20 5.1E-25 132.7 11.2 83 109-192 12-94 (95)
63 2fy1_A RNA-binding motif prote 99.8 1.6E-20 5.3E-25 138.0 11.6 85 109-195 4-88 (116)
64 1wi8_A EIF-4B, eukaryotic tran 99.8 1.4E-20 4.9E-25 135.2 11.0 86 109-197 12-98 (104)
65 2e5h_A Zinc finger CCHC-type a 99.8 1.6E-20 5.6E-25 132.3 10.9 83 108-191 12-94 (94)
66 2cpe_A RNA-binding protein EWS 99.8 1.5E-20 5E-25 137.1 11.0 89 108-197 11-107 (113)
67 2jrs_A RNA-binding protein 39; 99.8 1.2E-20 4.1E-25 136.9 10.4 85 109-194 23-107 (108)
68 2d9p_A Polyadenylate-binding p 99.8 2.3E-20 8E-25 133.8 11.6 86 109-197 12-97 (103)
69 2div_A TRNA selenocysteine ass 99.8 1.6E-20 5.5E-25 133.6 10.6 86 109-195 6-96 (99)
70 2dgx_A KIAA0430 protein; RRM d 99.8 2.7E-20 9.1E-25 132.1 11.7 84 110-197 7-94 (96)
71 2cqd_A RNA-binding region cont 99.8 2.4E-20 8.3E-25 136.6 11.8 85 108-194 13-97 (116)
72 4a8x_A RNA-binding protein wit 99.8 1.7E-20 5.9E-25 130.4 10.4 83 111-194 3-86 (88)
73 3ex7_B RNA-binding protein 8A; 99.8 1.7E-20 5.7E-25 139.4 10.8 89 106-195 16-104 (126)
74 2dgp_A Bruno-like 4, RNA bindi 99.8 2.3E-20 7.9E-25 134.4 11.2 90 108-197 9-100 (106)
75 2dgv_A HnRNP M, heterogeneous 99.8 2.8E-20 9.6E-25 130.5 11.3 85 109-196 5-89 (92)
76 3ucg_A Polyadenylate-binding p 99.8 3E-20 1E-24 129.5 10.7 81 112-194 6-86 (89)
77 3s7r_A Heterogeneous nuclear r 99.8 4.2E-20 1.4E-24 128.4 11.3 80 109-190 8-87 (87)
78 3n9u_C Cleavage and polyadenyl 99.8 2.6E-20 9E-25 143.8 11.3 83 111-194 54-138 (156)
79 2kxn_B Transformer-2 protein h 99.8 1.5E-20 5.1E-25 140.7 9.4 88 107-195 41-128 (129)
80 2dh8_A DAZ-associated protein 99.8 2.2E-20 7.4E-25 134.4 9.7 88 108-197 12-99 (105)
81 1h2v_Z 20 kDa nuclear CAP bind 99.8 7.8E-20 2.7E-24 140.7 13.4 86 109-195 36-121 (156)
82 2dhg_A TRNA selenocysteine ass 99.8 3.1E-20 1.1E-24 133.3 10.4 85 109-195 6-92 (104)
83 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.3E-19 4.4E-24 129.9 13.5 86 108-196 11-96 (103)
84 3nmr_A Cugbp ELAV-like family 99.8 2.5E-20 8.4E-25 144.7 10.3 104 111-216 2-109 (175)
85 2cq3_A RNA-binding protein 9; 99.8 1.5E-19 5.2E-24 129.5 13.4 88 107-197 10-97 (103)
86 1x4a_A Splicing factor, argini 99.8 8.8E-20 3E-24 132.2 12.2 88 107-198 17-104 (109)
87 2m2b_A RNA-binding protein 10; 99.8 7.9E-21 2.7E-25 142.4 6.8 85 109-195 20-110 (131)
88 2rs2_A Musashi-1, RNA-binding 99.8 4.8E-20 1.6E-24 133.9 10.6 86 109-196 22-107 (109)
89 3ulh_A THO complex subunit 4; 99.8 8.9E-20 3E-24 131.6 12.0 83 107-191 24-106 (107)
90 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.9E-20 2E-24 142.9 11.8 89 107-196 67-155 (165)
91 2khc_A Testis-specific RNP-typ 99.8 2.4E-20 8.1E-25 137.0 9.1 82 109-191 37-118 (118)
92 2ywk_A Putative RNA-binding pr 99.8 5.9E-20 2E-24 129.6 10.5 82 109-192 13-94 (95)
93 2cpi_A CCR4-NOT transcription 99.8 3.8E-20 1.3E-24 134.8 9.7 90 109-199 12-107 (111)
94 2lea_A Serine/arginine-rich sp 99.8 1.4E-20 4.8E-25 142.0 7.6 86 109-195 44-129 (135)
95 1s79_A Lupus LA protein; RRM, 99.8 2.5E-20 8.5E-25 134.2 8.5 79 111-192 10-88 (103)
96 3pgw_S U1-70K; protein-RNA com 99.8 3.4E-20 1.2E-24 165.0 11.1 86 109-195 99-184 (437)
97 1p1t_A Cleavage stimulation fa 99.8 1.4E-20 4.9E-25 135.0 7.1 82 112-194 8-89 (104)
98 2do0_A HnRNP M, heterogeneous 99.8 1.9E-19 6.7E-24 131.2 13.2 84 109-194 12-95 (114)
99 2dgw_A Probable RNA-binding pr 99.8 1.5E-19 5.1E-24 126.7 11.8 82 109-194 7-88 (91)
100 2cqp_A RNA-binding protein 12; 99.8 3.6E-20 1.2E-24 131.6 8.7 84 110-194 13-96 (98)
101 1x4b_A Heterogeneous nuclear r 99.8 6.8E-20 2.3E-24 134.2 10.3 84 112-197 27-110 (116)
102 2cqg_A TDP-43, TAR DNA-binding 99.8 2.3E-19 7.7E-24 128.6 12.8 85 108-195 11-95 (103)
103 2mss_A Protein (musashi1); RNA 99.8 2.2E-20 7.4E-25 126.3 6.6 75 114-190 1-75 (75)
104 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.7E-20 5.9E-25 134.1 6.3 85 107-194 14-99 (100)
105 1sjq_A Polypyrimidine tract-bi 99.8 8.8E-20 3E-24 131.5 9.9 82 109-197 13-96 (105)
106 3tyt_A Heterogeneous nuclear r 99.8 1.4E-19 4.9E-24 145.7 12.0 76 111-192 3-79 (205)
107 2qfj_A FBP-interacting repress 99.8 5.6E-20 1.9E-24 147.6 9.6 104 112-216 28-139 (216)
108 2cq4_A RNA binding motif prote 99.8 2.5E-20 8.6E-25 136.1 6.5 81 112-194 25-105 (114)
109 2kt5_A RNA and export factor-b 99.8 3.1E-19 1.1E-23 132.2 12.5 86 108-195 31-116 (124)
110 2dis_A Unnamed protein product 99.8 1.1E-19 3.6E-24 131.6 9.5 85 110-195 6-94 (109)
111 2ek1_A RNA-binding protein 12; 99.8 4.8E-20 1.6E-24 130.1 7.4 81 111-192 14-94 (95)
112 2nlw_A Eukaryotic translation 99.8 9.5E-20 3.3E-24 131.4 9.0 84 108-194 11-101 (105)
113 1wez_A HnRNP H', FTP-3, hetero 99.8 1E-19 3.6E-24 130.7 9.0 83 109-195 12-94 (102)
114 1wg5_A Heterogeneous nuclear r 99.8 1.8E-19 6.2E-24 129.7 10.3 86 109-197 12-98 (104)
115 2cjk_A Nuclear polyadenylated 99.8 2E-20 6.9E-25 144.4 5.6 100 111-216 2-101 (167)
116 2ki2_A SS-DNA binding protein 99.8 1.6E-20 5.6E-25 131.3 4.6 81 113-195 2-82 (90)
117 2err_A Ataxin-2-binding protei 99.8 1.4E-19 4.8E-24 131.4 9.7 85 107-194 24-108 (109)
118 2fc8_A NCL protein; structure 99.8 3E-19 1E-23 127.6 11.0 88 108-199 11-98 (102)
119 2fc9_A NCL protein; structure 99.8 2.7E-19 9.3E-24 127.8 10.6 85 108-197 11-95 (101)
120 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.5E-20 1.5E-24 125.2 5.8 76 113-190 1-76 (77)
121 2lcw_A RNA-binding protein FUS 99.7 3.2E-21 1.1E-25 141.4 0.0 91 110-201 5-103 (116)
122 1x4e_A RNA binding motif, sing 99.8 2.5E-20 8.7E-25 128.9 4.3 80 110-190 3-82 (85)
123 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.6E-19 1.2E-23 134.1 10.9 81 109-190 60-140 (140)
124 2a3j_A U1 small nuclear ribonu 99.8 3.6E-19 1.2E-23 132.9 10.5 82 109-194 26-111 (127)
125 2wbr_A GW182, gawky, LD47780P; 99.8 4E-19 1.4E-23 123.2 9.8 75 110-191 5-79 (89)
126 2dnq_A RNA-binding protein 4B; 99.8 7.1E-19 2.4E-23 123.0 11.3 81 109-198 5-85 (90)
127 1x5o_A RNA binding motif, sing 99.8 5.1E-19 1.7E-23 129.0 10.7 83 110-193 23-112 (114)
128 2cpy_A RNA-binding protein 12; 99.8 1.6E-19 5.4E-24 132.1 7.9 83 109-194 12-95 (114)
129 2hgl_A HNRPF protein, heteroge 99.8 1.6E-19 5.5E-24 136.3 8.1 83 109-194 41-126 (136)
130 2db1_A Heterogeneous nuclear r 99.8 2.3E-19 7.7E-24 132.2 8.6 83 109-194 14-99 (118)
131 1fj7_A Nucleolin RBD1, protein 99.8 3.3E-20 1.1E-24 132.6 3.9 84 109-195 14-97 (101)
132 1fje_B Nucleolin RBD12, protei 99.8 5.1E-20 1.7E-24 143.4 5.2 105 108-216 9-113 (175)
133 2cpx_A Hypothetical protein FL 99.8 8.6E-20 2.9E-24 133.3 5.9 88 109-197 22-109 (115)
134 1x4d_A Matrin 3; structural ge 99.8 3.4E-19 1.2E-23 128.0 8.8 80 109-195 12-94 (102)
135 3r27_A HnRNP L, heterogeneous 99.8 8.6E-19 2.9E-23 125.1 10.7 79 109-194 18-98 (100)
136 2jvr_A Nucleolar protein 3; RN 99.8 4.1E-19 1.4E-23 129.5 9.2 80 110-194 26-106 (111)
137 3pgw_A U1-A; protein-RNA compl 99.8 1.4E-18 4.9E-23 145.3 13.8 82 109-194 6-91 (282)
138 1x4c_A Splicing factor, argini 99.8 1.5E-18 5.1E-23 125.6 11.9 79 109-195 12-95 (108)
139 2ad9_A Polypyrimidine tract-bi 99.8 8.6E-19 3E-23 129.1 10.7 81 109-196 28-110 (119)
140 2cq1_A PTB-like protein L; RRM 99.8 1.4E-18 4.8E-23 124.6 11.5 81 109-196 12-94 (101)
141 2cpj_A Non-POU domain-containi 99.8 8.9E-19 3E-23 124.7 10.1 84 109-199 12-95 (99)
142 2adc_A Polypyrimidine tract-bi 99.8 1.2E-18 4.2E-23 142.1 12.3 102 109-216 31-165 (229)
143 2e5j_A Methenyltetrahydrofolat 99.8 8.2E-19 2.8E-23 124.5 9.9 82 108-195 15-96 (97)
144 3q2s_C Cleavage and polyadenyl 99.8 3.4E-19 1.2E-23 145.8 8.9 81 111-192 67-149 (229)
145 1wex_A Hypothetical protein (r 99.8 9.8E-19 3.4E-23 126.1 10.1 82 109-197 12-95 (104)
146 1iqt_A AUF1, heterogeneous nuc 99.8 1.3E-19 4.5E-24 122.3 5.1 75 114-190 1-75 (75)
147 1x4g_A Nucleolysin TIAR; struc 99.8 2E-18 6.9E-23 125.0 11.7 80 110-196 23-102 (109)
148 1wel_A RNA-binding protein 12; 99.8 1.5E-19 5.1E-24 134.1 5.7 84 109-194 22-105 (124)
149 2cpd_A Apobec-1 stimulating pr 99.8 3.3E-18 1.1E-22 121.7 12.4 82 107-197 10-93 (99)
150 2dgt_A RNA-binding protein 30; 99.8 3E-18 1E-22 120.3 12.0 83 108-199 6-88 (92)
151 2dnp_A RNA-binding protein 14; 99.8 2.4E-18 8.2E-23 120.3 11.4 79 109-196 6-84 (90)
152 2krb_A Eukaryotic translation 99.8 2.5E-19 8.6E-24 123.0 6.2 73 112-187 1-80 (81)
153 1nu4_A U1A RNA binding domain; 99.8 5.4E-19 1.9E-23 125.1 8.1 82 109-194 5-90 (97)
154 2dnn_A RNA-binding protein 12; 99.8 5.2E-19 1.8E-23 128.6 7.8 79 112-194 16-94 (109)
155 1why_A Hypothetical protein ri 99.8 1.8E-18 6.3E-23 122.6 10.5 80 109-195 14-95 (97)
156 2lmi_A GRSF-1, G-rich sequence 99.8 1.6E-19 5.3E-24 130.7 5.0 84 108-194 7-93 (107)
157 3lqv_A PRE-mRNA branch site pr 99.8 2.1E-18 7.2E-23 126.0 10.5 82 109-194 5-86 (115)
158 1fjc_A Nucleolin RBD2, protein 99.8 7E-19 2.4E-23 124.4 7.6 79 111-195 15-93 (96)
159 2la4_A Nuclear and cytoplasmic 99.8 1.2E-18 4E-23 124.4 8.8 76 111-193 26-101 (101)
160 2jvo_A Nucleolar protein 3; nu 99.8 1.8E-18 6.3E-23 125.4 9.9 78 109-195 28-105 (108)
161 1wf1_A RNA-binding protein RAL 99.8 2.9E-18 9.9E-23 124.4 10.7 78 111-197 26-104 (110)
162 2kvi_A Nuclear polyadenylated 99.8 1.5E-18 5.3E-23 122.9 8.9 79 110-197 8-87 (96)
163 2ytc_A PRE-mRNA-splicing facto 99.8 3.7E-18 1.3E-22 117.9 10.4 76 109-191 9-85 (85)
164 2xs2_A Deleted in azoospermia- 99.8 6.8E-19 2.3E-23 125.9 6.7 81 111-195 8-88 (102)
165 2cqh_A IGF-II mRNA-binding pro 99.8 2.1E-18 7.1E-23 121.3 9.0 80 110-197 6-87 (93)
166 2xnq_A Nuclear polyadenylated 99.8 5.7E-18 2E-22 120.3 11.3 78 107-193 17-95 (97)
167 2dha_A FLJ20171 protein; RRM d 99.8 7.5E-19 2.6E-23 130.4 6.9 82 110-194 21-106 (123)
168 2dgu_A Heterogeneous nuclear r 99.8 7.6E-18 2.6E-22 120.7 12.0 78 109-195 8-85 (103)
169 2j8a_A Histone-lysine N-methyl 99.8 1.9E-18 6.4E-23 127.7 8.4 79 113-192 3-95 (136)
170 1qm9_A Polypyrimidine tract-bi 99.8 2.3E-18 7.9E-23 136.8 9.5 99 112-216 3-134 (198)
171 1x4f_A Matrin 3; structural ge 99.8 1.8E-18 6.2E-23 126.1 8.1 82 109-197 22-106 (112)
172 2f3j_A RNA and export factor b 99.7 4.7E-18 1.6E-22 133.8 10.3 85 108-194 84-168 (177)
173 3egn_A RNA-binding protein 40; 99.7 3.7E-18 1.3E-22 129.4 9.3 84 108-195 41-132 (143)
174 2hgn_A Heterogeneous nuclear r 99.7 5.4E-19 1.9E-23 133.8 4.2 82 110-195 44-125 (139)
175 2hgm_A HNRPF protein, heteroge 99.7 1.9E-18 6.6E-23 128.6 6.7 80 110-193 40-121 (126)
176 1whx_A Hypothetical protein ri 99.7 3.8E-18 1.3E-22 124.2 8.1 76 111-193 9-84 (111)
177 1x5p_A Negative elongation fac 99.7 2.7E-17 9.1E-22 116.6 11.9 80 108-196 11-90 (97)
178 2e5g_A U6 snRNA-specific termi 99.7 1.2E-17 4.3E-22 117.6 10.1 79 111-196 7-85 (94)
179 2yh0_A Splicing factor U2AF 65 99.7 1.5E-17 5.1E-22 131.6 11.1 98 111-216 3-128 (198)
180 2e44_A Insulin-like growth fac 99.7 1.1E-17 3.6E-22 118.2 9.1 80 110-194 13-93 (96)
181 3sde_A Paraspeckle component 1 99.7 1.4E-17 4.7E-22 138.4 11.2 92 109-216 19-110 (261)
182 3d2w_A TAR DNA-binding protein 99.7 1.8E-17 6.1E-22 116.0 9.2 78 109-195 8-86 (89)
183 2g4b_A Splicing factor U2AF 65 99.7 2.1E-17 7.1E-22 127.9 10.5 95 111-216 3-108 (172)
184 1wg1_A KIAA1579 protein, homol 99.7 1.7E-17 5.9E-22 115.5 8.6 76 111-194 4-79 (88)
185 1sjr_A Polypyrimidine tract-bi 99.7 3.7E-17 1.3E-21 126.4 10.8 79 111-194 45-125 (164)
186 3beg_B Splicing factor, argini 99.7 1.7E-17 5.9E-22 121.5 8.1 77 110-194 14-95 (115)
187 3zzy_A Polypyrimidine tract-bi 99.7 5.9E-17 2E-21 120.9 11.1 79 111-195 27-108 (130)
188 2dnl_A Cytoplasmic polyadenyla 99.7 1.9E-17 6.5E-22 120.9 7.5 79 110-192 6-87 (114)
189 2cq2_A Hypothetical protein LO 99.7 6.7E-17 2.3E-21 118.0 9.5 79 110-194 23-107 (114)
190 1wf0_A TDP-43, TAR DNA-binding 99.7 2.2E-17 7.5E-22 114.9 6.0 80 111-198 4-83 (88)
191 2diu_A KIAA0430 protein; struc 99.7 1.2E-16 4.1E-21 111.9 9.1 73 112-195 8-86 (96)
192 2pe8_A Splicing factor 45; RRM 99.7 3E-16 1E-20 113.1 11.2 82 110-192 6-93 (105)
193 2voo_A Lupus LA protein; RNA-b 99.7 1.6E-16 5.5E-21 126.6 10.6 79 112-193 109-187 (193)
194 2e5i_A Heterogeneous nuclear r 99.7 2.7E-16 9.3E-21 116.6 11.0 75 113-194 26-103 (124)
195 2bz2_A Negative elongation fac 99.7 1.6E-16 5.6E-21 117.4 9.3 79 109-196 36-114 (121)
196 2hzc_A Splicing factor U2AF 65 99.7 1.4E-16 4.9E-21 110.2 8.4 71 111-189 5-86 (87)
197 2dit_A HIV TAT specific factor 99.6 8.6E-15 2.9E-19 106.4 11.6 83 108-195 11-104 (112)
198 1jmt_A Splicing factor U2AF 35 99.6 6.9E-16 2.4E-20 111.0 4.2 72 117-190 20-103 (104)
199 3u1l_A PRE-mRNA-splicing facto 99.6 3.3E-15 1.1E-19 122.5 8.6 80 109-194 131-230 (240)
200 3v4m_A Splicing factor U2AF 65 99.6 1.2E-14 4.2E-19 104.6 9.0 81 111-192 4-96 (105)
201 3ue2_A Poly(U)-binding-splicin 99.5 4.7E-14 1.6E-18 103.7 9.1 81 111-192 19-108 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.6E-13 8.8E-18 96.8 11.1 76 112-195 10-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 6.5E-13 2.2E-17 114.3 9.9 78 108-191 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 3.7E-12 1.3E-16 92.9 9.5 77 111-192 6-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.2 4.9E-11 1.7E-15 82.6 8.3 75 109-193 4-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.1 1.2E-10 4.1E-15 85.5 7.9 77 108-191 14-94 (121)
207 4f25_A Polyadenylate-binding p 99.1 4.1E-13 1.4E-17 97.9 -7.5 104 15-128 7-113 (115)
208 3dxb_A Thioredoxin N-terminall 99.0 5.5E-10 1.9E-14 90.1 8.0 68 124-192 141-212 (222)
209 1ufw_A Synaptojanin 2; RNP dom 99.0 8.1E-10 2.8E-14 76.9 6.7 75 108-192 11-94 (95)
210 3lqv_A PRE-mRNA branch site pr 98.7 5.4E-10 1.8E-14 80.9 -3.7 98 15-138 10-109 (115)
211 2lmi_A GRSF-1, G-rich sequence 98.6 1.8E-08 6.3E-13 72.0 2.0 78 12-91 10-93 (107)
212 2dnn_A RNA-binding protein 12; 98.6 2.5E-09 8.6E-14 77.1 -2.6 73 14-88 17-91 (109)
213 2hvz_A Splicing factor, argini 98.5 1.2E-09 4.2E-14 77.1 -4.6 97 15-121 2-100 (101)
214 2l9w_A U4/U6 snRNA-associated- 98.5 8.5E-07 2.9E-11 63.1 9.3 72 111-189 20-96 (117)
215 2hgm_A HNRPF protein, heteroge 98.5 7.2E-09 2.5E-13 76.7 -1.4 72 14-87 43-118 (126)
216 1s79_A Lupus LA protein; RRM, 98.5 7.6E-09 2.6E-13 73.8 -2.3 74 14-89 12-88 (103)
217 2i2y_A Fusion protein consists 98.5 1.5E-07 5.2E-12 71.1 4.8 65 150-216 9-87 (150)
218 2kn4_A Immunoglobulin G-bindin 98.4 4.4E-07 1.5E-11 68.9 5.7 75 141-217 2-85 (158)
219 1wez_A HnRNP H', FTP-3, hetero 98.4 1.6E-08 5.5E-13 71.8 -2.4 70 14-85 16-87 (102)
220 2lkz_A RNA-binding protein 5; 98.4 7.9E-09 2.7E-13 72.6 -4.1 68 15-84 11-89 (95)
221 2hgl_A HNRPF protein, heteroge 98.4 1.3E-08 4.3E-13 76.3 -3.3 74 13-88 44-123 (136)
222 2hgn_A Heterogeneous nuclear r 98.3 4.1E-08 1.4E-12 73.8 -1.0 71 15-87 48-120 (139)
223 2db1_A Heterogeneous nuclear r 98.3 1.4E-08 4.8E-13 74.0 -3.5 76 14-91 18-99 (118)
224 3p5t_L Cleavage and polyadenyl 98.3 1.3E-08 4.4E-13 70.4 -3.6 72 15-88 3-81 (90)
225 2dha_A FLJ20171 protein; RRM d 98.3 2.5E-08 8.6E-13 73.4 -2.2 75 14-90 24-105 (123)
226 2cpy_A RNA-binding protein 12; 98.3 4.2E-08 1.4E-12 70.9 -1.1 76 14-91 16-95 (114)
227 2mss_A Protein (musashi1); RNA 98.3 6.3E-08 2.2E-12 64.3 -1.1 67 16-84 2-72 (75)
228 3s8s_A Histone-lysine N-methyl 98.3 1.1E-08 3.8E-13 73.7 -5.3 73 15-89 8-85 (110)
229 2wbr_A GW182, gawky, LD47780P; 98.3 8.9E-09 3E-13 71.1 -5.6 72 9-87 5-78 (89)
230 1wg5_A Heterogeneous nuclear r 98.2 4.6E-08 1.6E-12 69.5 -2.8 71 14-86 16-90 (104)
231 4fxv_A ELAV-like protein 1; RN 98.2 1.6E-08 5.4E-13 71.5 -6.0 69 15-85 21-94 (99)
232 1iqt_A AUF1, heterogeneous nuc 98.2 8.7E-08 3E-12 63.5 -2.1 67 16-84 2-72 (75)
233 1wel_A RNA-binding protein 12; 98.2 1.3E-07 4.5E-12 69.2 -1.4 76 14-91 26-105 (124)
234 2lxi_A RNA-binding protein 10; 98.2 2.5E-08 8.5E-13 69.3 -5.1 70 15-86 3-79 (91)
235 2rs2_A Musashi-1, RNA-binding 98.2 1.7E-08 5.8E-13 72.5 -6.3 68 15-84 27-98 (109)
236 2krb_A Eukaryotic translation 98.1 1.2E-07 4.1E-12 64.0 -2.0 69 15-83 3-79 (81)
237 3ns6_A Eukaryotic translation 98.1 3.3E-08 1.1E-12 69.8 -5.1 72 15-88 8-91 (100)
238 2j76_E EIF-4B, EIF4B, eukaryot 98.1 3.1E-07 1.1E-11 64.6 -0.3 71 15-87 21-95 (100)
239 2jvr_A Nucleolar protein 3; RN 98.1 5.5E-08 1.9E-12 70.3 -4.6 71 14-87 29-102 (111)
240 2m2b_A RNA-binding protein 10; 98.1 2E-07 6.9E-12 68.9 -1.9 71 15-88 25-106 (131)
241 2lcw_A RNA-binding protein FUS 97.4 4.6E-07 1.6E-11 65.4 0.0 72 15-88 9-93 (116)
242 2dgw_A Probable RNA-binding pr 98.1 4E-08 1.4E-12 67.8 -5.6 71 13-85 10-82 (91)
243 3n9u_C Cleavage and polyadenyl 98.0 6.5E-08 2.2E-12 74.0 -5.3 74 14-89 56-136 (156)
244 2ki2_A SS-DNA binding protein 98.0 3.4E-07 1.2E-11 62.9 -1.1 71 15-88 3-78 (90)
245 1uaw_A Mouse-musashi-1; RNP-ty 98.0 4E-07 1.4E-11 60.5 -0.9 68 15-84 2-73 (77)
246 2dgs_A DAZ-associated protein 98.0 1.6E-07 5.6E-12 65.7 -3.6 72 14-87 11-86 (99)
247 1p1t_A Cleavage stimulation fa 98.0 2.5E-07 8.6E-12 65.2 -3.0 76 15-92 10-90 (104)
248 2cq4_A RNA binding motif prote 97.9 1.9E-07 6.6E-12 67.1 -4.1 73 15-89 27-103 (114)
249 1x5u_A Splicing factor 3B subu 97.9 3.4E-07 1.2E-11 64.7 -2.9 72 14-87 16-92 (105)
250 1x4e_A RNA binding motif, sing 97.9 3E-07 1E-11 62.4 -3.1 69 14-84 6-79 (85)
251 2dng_A Eukaryotic translation 97.9 1.3E-07 4.3E-12 66.8 -5.2 72 14-87 16-90 (103)
252 2a3j_A U1 small nuclear ribonu 97.9 2.3E-07 7.7E-12 68.6 -4.1 73 15-89 31-109 (127)
253 3ucg_A Polyadenylate-binding p 97.9 1.7E-07 5.7E-12 64.2 -4.6 70 15-86 8-81 (89)
254 1wi8_A EIF-4B, eukaryotic tran 97.9 2.5E-07 8.4E-12 65.5 -3.9 73 13-87 15-91 (104)
255 2fy1_A RNA-binding motif prote 97.9 5.2E-07 1.8E-11 65.4 -2.3 72 15-88 9-84 (116)
256 2dnz_A Probable RNA-binding pr 97.9 3.1E-07 1.1E-11 63.6 -3.4 73 13-87 5-82 (95)
257 2cpi_A CCR4-NOT transcription 97.9 3.9E-07 1.3E-11 65.4 -3.2 70 15-86 17-97 (111)
258 2dgv_A HnRNP M, heterogeneous 97.9 2.2E-07 7.6E-12 64.0 -4.4 74 12-87 7-83 (92)
259 3q2s_C Cleavage and polyadenyl 97.9 4E-07 1.4E-11 73.9 -3.5 73 15-89 70-149 (229)
260 1whw_A Hypothetical protein ri 97.9 2.3E-07 8E-12 64.9 -4.5 72 14-87 9-85 (99)
261 3s7r_A Heterogeneous nuclear r 97.9 1.1E-07 3.6E-12 65.0 -6.3 68 14-83 12-83 (87)
262 2cqb_A Peptidyl-prolyl CIS-tra 97.9 3.3E-07 1.1E-11 64.4 -3.9 71 14-86 13-88 (102)
263 1x5s_A Cold-inducible RNA-bind 97.9 3.4E-07 1.2E-11 64.4 -3.9 74 12-87 11-89 (102)
264 2err_A Ataxin-2-binding protei 97.9 3.7E-07 1.3E-11 65.3 -3.9 70 14-85 30-102 (109)
265 1x4a_A Splicing factor, argini 97.9 2.3E-07 7.7E-12 66.2 -5.0 70 15-86 24-95 (109)
266 3egn_A RNA-binding protein 40; 97.9 1.9E-07 6.4E-12 70.0 -5.7 72 15-88 47-128 (143)
267 2kxn_B Transformer-2 protein h 97.9 5.3E-07 1.8E-11 66.6 -3.2 71 15-87 48-123 (129)
268 1x5t_A Splicing factor 3B subu 97.9 4.8E-07 1.7E-11 62.8 -3.2 72 14-87 6-83 (96)
269 2la6_A RNA-binding protein FUS 97.9 3.6E-07 1.2E-11 64.0 -3.9 68 15-84 15-95 (99)
270 1x4b_A Heterogeneous nuclear r 97.9 3.8E-07 1.3E-11 65.7 -3.9 70 15-86 29-102 (116)
271 2dnm_A SRP46 splicing factor; 97.9 3.5E-07 1.2E-11 64.5 -4.1 71 15-87 15-90 (103)
272 3md1_A Nuclear and cytoplasmic 97.9 1E-07 3.5E-12 64.4 -6.6 69 15-85 3-76 (83)
273 2cqp_A RNA-binding protein 12; 97.8 3.1E-07 1E-11 64.1 -4.4 72 12-85 14-90 (98)
274 1wg1_A KIAA1579 protein, homol 97.8 2.8E-07 9.7E-12 63.2 -4.6 66 14-84 6-72 (88)
275 2x1f_A MRNA 3'-END-processing 97.8 3.2E-07 1.1E-11 63.9 -4.5 72 15-88 4-80 (96)
276 2cq0_A Eukaryotic translation 97.8 4E-07 1.4E-11 64.2 -4.2 71 14-86 16-91 (103)
277 2e5h_A Zinc finger CCHC-type a 97.8 4.4E-07 1.5E-11 62.7 -4.0 68 14-83 17-89 (94)
278 2d9p_A Polyadenylate-binding p 97.8 4.3E-07 1.5E-11 64.0 -4.2 71 15-87 17-90 (103)
279 2ek1_A RNA-binding protein 12; 97.8 3.2E-07 1.1E-11 63.6 -4.9 70 13-84 15-89 (95)
280 2lea_A Serine/arginine-rich sp 97.8 1E-06 3.6E-11 65.5 -2.5 71 15-87 49-124 (135)
281 2fc8_A NCL protein; structure 97.8 4E-07 1.4E-11 64.0 -4.5 69 15-87 17-89 (102)
282 2khc_A Testis-specific RNP-typ 97.8 6.2E-07 2.1E-11 64.8 -3.8 68 15-84 42-114 (118)
283 2dhg_A TRNA selenocysteine ass 97.8 4.7E-07 1.6E-11 63.9 -4.4 73 14-88 10-88 (104)
284 2div_A TRNA selenocysteine ass 97.8 6.8E-07 2.3E-11 62.4 -3.5 66 14-81 10-81 (99)
285 2e5j_A Methenyltetrahydrofolat 97.8 6E-07 2E-11 62.7 -3.8 69 14-86 20-90 (97)
286 1x4f_A Matrin 3; structural ge 97.8 1.8E-06 6.2E-11 62.3 -1.4 68 15-87 27-99 (112)
287 2nlw_A Eukaryotic translation 97.8 5.4E-07 1.8E-11 64.0 -4.2 71 14-84 16-94 (105)
288 2cpe_A RNA-binding protein EWS 97.8 5.5E-07 1.9E-11 64.5 -4.2 71 15-87 17-100 (113)
289 2dgp_A Bruno-like 4, RNA bindi 97.8 6.9E-07 2.4E-11 63.2 -3.7 71 14-86 14-92 (106)
290 2cpz_A CUG triplet repeat RNA- 97.8 3.6E-07 1.2E-11 65.8 -5.4 71 15-87 27-102 (115)
291 2dh8_A DAZ-associated protein 97.8 2.6E-07 8.8E-12 65.4 -6.2 71 15-87 18-92 (105)
292 2jrs_A RNA-binding protein 39; 97.7 3.3E-07 1.1E-11 65.5 -5.9 73 12-86 25-102 (108)
293 3ex7_B RNA-binding protein 8A; 97.7 9.1E-07 3.1E-11 64.6 -3.7 71 15-87 24-99 (126)
294 3beg_B Splicing factor, argini 97.7 2.3E-06 7.8E-11 61.8 -1.6 65 14-84 17-83 (115)
295 1x4h_A RNA-binding protein 28; 97.7 5E-07 1.7E-11 64.4 -5.1 70 15-86 17-97 (111)
296 2cph_A RNA binding motif prote 97.7 8.9E-07 3.1E-11 62.7 -3.8 71 15-87 17-94 (107)
297 3bs9_A Nucleolysin TIA-1 isofo 97.7 2.4E-07 8.2E-12 63.1 -6.6 70 14-85 7-81 (87)
298 1p27_B RNA-binding protein 8A; 97.7 3.6E-07 1.2E-11 64.7 -5.9 70 15-86 25-99 (106)
299 2cq3_A RNA-binding protein 9; 97.7 6.9E-07 2.3E-11 62.9 -4.5 73 13-87 15-90 (103)
300 2ywk_A Putative RNA-binding pr 97.7 2.8E-07 9.6E-12 63.9 -6.5 69 14-84 17-89 (95)
301 2dnh_A Bruno-like 5, RNA bindi 97.7 4.9E-07 1.7E-11 63.9 -5.4 70 14-85 16-92 (105)
302 2la4_A Nuclear and cytoplasmic 97.7 1.4E-06 4.9E-11 61.0 -3.0 68 14-86 28-97 (101)
303 3mdf_A Peptidyl-prolyl CIS-tra 97.7 3.1E-07 1.1E-11 62.2 -6.2 69 14-84 8-81 (85)
304 1fj7_A Nucleolin RBD1, protein 97.7 3.9E-07 1.3E-11 64.0 -6.0 73 13-87 17-92 (101)
305 2jwn_A Embryonic polyadenylate 97.7 5.7E-07 1.9E-11 65.6 -5.4 70 15-86 38-111 (124)
306 3d2w_A TAR DNA-binding protein 97.7 5E-07 1.7E-11 62.3 -5.4 55 11-69 9-64 (89)
307 2do4_A Squamous cell carcinoma 97.7 3.3E-07 1.1E-11 64.3 -6.6 69 15-85 19-91 (100)
308 2dgx_A KIAA0430 protein; RRM d 97.7 3.3E-07 1.1E-11 64.0 -6.5 71 14-86 10-86 (96)
309 1oo0_B CG8781-PA, drosophila Y 97.7 5.6E-07 1.9E-11 64.2 -5.4 70 15-86 28-102 (110)
310 2fc9_A NCL protein; structure 97.7 1E-06 3.4E-11 61.9 -4.2 69 14-86 16-87 (101)
311 1sjr_A Polypyrimidine tract-bi 97.6 8.3E-07 2.8E-11 68.3 -5.1 74 11-87 44-121 (164)
312 2kt5_A RNA and export factor-b 97.6 1.5E-06 5.2E-11 63.3 -3.6 69 15-85 37-109 (124)
313 2dis_A Unnamed protein product 97.6 7.2E-07 2.5E-11 63.4 -5.3 72 15-88 10-90 (109)
314 1sjq_A Polypyrimidine tract-bi 97.6 7E-07 2.4E-11 63.8 -5.3 68 15-87 18-89 (105)
315 2cpx_A Hypothetical protein FL 97.6 1.1E-06 3.6E-11 63.2 -4.7 70 15-87 27-102 (115)
316 2cqi_A Nucleolysin TIAR; RNA r 97.6 4.6E-07 1.6E-11 63.9 -6.5 72 14-87 16-90 (103)
317 2cqc_A Arginine/serine-rich sp 97.6 4.6E-07 1.6E-11 62.7 -6.5 69 14-84 16-89 (95)
318 1uw4_A UPF3X; nonsense mediate 97.6 0.00034 1.2E-08 48.3 8.2 71 113-183 2-74 (91)
319 2cpf_A RNA binding motif prote 97.6 4.7E-07 1.6E-11 63.2 -6.6 71 15-87 7-85 (98)
320 2dgo_A Cytotoxic granule-assoc 97.6 3.4E-07 1.2E-11 65.9 -7.5 71 15-87 17-92 (115)
321 3ulh_A THO complex subunit 4; 97.6 6.3E-07 2.1E-11 63.5 -6.0 69 14-84 30-102 (107)
322 1nu4_A U1A RNA binding domain; 97.6 3.4E-07 1.2E-11 63.7 -7.3 72 15-88 10-87 (97)
323 1wey_A Calcipressin 1; structu 97.6 0.00017 5.7E-09 50.9 6.6 77 111-194 4-85 (104)
324 4a8x_A RNA-binding protein wit 97.6 4.6E-07 1.6E-11 61.7 -6.5 69 15-85 6-80 (88)
325 2cqd_A RNA-binding region cont 97.6 2E-06 6.8E-11 61.9 -3.5 70 15-87 19-93 (116)
326 1whx_A Hypothetical protein ri 97.6 1.8E-06 6.3E-11 61.9 -3.7 67 15-86 12-80 (111)
327 2dnl_A Cytoplasmic polyadenyla 97.6 4.7E-06 1.6E-10 59.9 -1.6 58 12-72 7-72 (114)
328 2dhx_A Poly (ADP-ribose) polym 97.6 0.00085 2.9E-08 47.1 10.0 74 111-194 7-85 (104)
329 3zzy_A Polypyrimidine tract-bi 97.6 1.4E-06 4.9E-11 64.5 -4.7 68 8-79 23-93 (130)
330 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.6 1.1E-06 3.8E-11 65.1 -5.4 68 14-83 64-136 (140)
331 2f3j_A RNA and export factor b 97.6 5E-06 1.7E-10 64.7 -1.9 71 15-87 90-164 (177)
332 2do0_A HnRNP M, heterogeneous 97.6 7.9E-07 2.7E-11 63.7 -6.1 71 15-87 17-91 (114)
333 3pgw_S U1-70K; protein-RNA com 97.5 4.3E-06 1.5E-10 74.1 -2.7 72 15-88 104-180 (437)
334 2cpj_A Non-POU domain-containi 97.5 3.6E-06 1.2E-10 58.7 -2.6 67 15-86 17-85 (99)
335 2dnq_A RNA-binding protein 4B; 97.5 1.9E-06 6.6E-11 59.1 -4.1 70 11-87 6-77 (90)
336 2hzc_A Splicing factor U2AF 65 97.5 8.4E-07 2.9E-11 60.3 -6.1 66 14-84 7-84 (87)
337 1fjc_A Nucleolin RBD2, protein 97.5 4.5E-07 1.5E-11 63.0 -7.7 67 14-84 17-85 (96)
338 2voo_A Lupus LA protein; RNA-b 97.5 1.5E-06 5.2E-11 68.6 -5.5 69 15-85 111-182 (193)
339 2ad9_A Polypyrimidine tract-bi 97.5 2.6E-06 8.8E-11 62.2 -3.9 68 15-87 33-104 (119)
340 1x5o_A RNA binding motif, sing 97.5 4.2E-06 1.4E-10 59.9 -2.9 67 14-82 26-96 (114)
341 1x4d_A Matrin 3; structural ge 97.5 1.8E-06 6E-11 61.3 -4.9 68 15-87 17-89 (102)
342 2xs2_A Deleted in azoospermia- 97.5 1.2E-06 4E-11 61.6 -5.9 67 15-84 11-80 (102)
343 2cqg_A TDP-43, TAR DNA-binding 97.5 8E-07 2.7E-11 62.6 -6.8 67 15-84 17-87 (103)
344 2kvi_A Nuclear polyadenylated 97.5 3.7E-06 1.2E-10 58.5 -3.3 67 15-88 12-81 (96)
345 3r27_A HnRNP L, heterogeneous 97.5 8.5E-07 2.9E-11 62.7 -6.8 65 15-84 23-91 (100)
346 1why_A Hypothetical protein ri 97.5 3.4E-06 1.2E-10 58.7 -3.6 66 15-85 19-88 (97)
347 2j8a_A Histone-lysine N-methyl 97.5 1.6E-06 5.6E-11 63.9 -5.5 71 14-86 3-92 (136)
348 2jvo_A Nucleolar protein 3; nu 97.4 2.8E-06 9.6E-11 60.6 -4.3 66 15-87 33-100 (108)
349 1h2v_Z 20 kDa nuclear CAP bind 97.4 1.5E-06 5.2E-11 65.9 -6.2 72 14-87 40-116 (156)
350 1x4c_A Splicing factor, argini 97.4 1.4E-06 4.9E-11 62.0 -6.0 60 14-79 16-77 (108)
351 1wf0_A TDP-43, TAR DNA-binding 97.4 4.2E-06 1.5E-10 57.1 -3.4 51 15-69 7-58 (88)
352 2cqh_A IGF-II mRNA-binding pro 97.4 1.8E-06 6.1E-11 59.6 -5.7 68 14-87 9-80 (93)
353 1wf1_A RNA-binding protein RAL 97.4 3.2E-06 1.1E-10 60.2 -4.7 66 15-87 29-97 (110)
354 2cq1_A PTB-like protein L; RRM 97.4 5.1E-06 1.7E-10 58.7 -3.8 68 15-87 17-88 (101)
355 2e5g_A U6 snRNA-specific termi 97.3 7.5E-06 2.6E-10 56.6 -3.0 69 14-86 9-78 (94)
356 1rk8_A CG8781-PA, CG8781-PA pr 97.3 1.7E-06 5.9E-11 66.4 -6.9 72 15-88 74-150 (165)
357 1wex_A Hypothetical protein (r 97.3 3E-06 1E-10 60.3 -5.2 68 15-87 17-88 (104)
358 1u6f_A Tcubp1, RNA-binding pro 97.3 1.2E-06 4E-11 65.2 -7.9 71 15-87 44-119 (139)
359 2e5i_A Heterogeneous nuclear r 97.3 9.1E-06 3.1E-10 59.7 -3.6 65 11-80 23-90 (124)
360 2xnq_A Nuclear polyadenylated 97.2 4.5E-06 1.5E-10 58.3 -5.3 63 15-84 24-89 (97)
361 2ytc_A PRE-mRNA-splicing facto 97.2 5.6E-06 1.9E-10 55.9 -4.9 65 15-84 14-81 (85)
362 1x4g_A Nucleolysin TIAR; struc 97.1 4.3E-06 1.5E-10 59.5 -6.2 67 15-86 27-95 (109)
363 2dgt_A RNA-binding protein 30; 97.1 9E-06 3.1E-10 55.9 -4.7 66 15-87 12-79 (92)
364 2cq2_A Hypothetical protein LO 97.1 1.2E-05 4.1E-10 58.1 -4.2 58 15-77 27-88 (114)
365 1whv_A Poly(A)-specific ribonu 97.0 0.0028 9.7E-08 44.0 7.5 58 109-175 13-70 (100)
366 2cpd_A Apobec-1 stimulating pr 97.0 8.4E-06 2.9E-10 56.8 -5.9 66 14-86 16-85 (99)
367 2dnp_A RNA-binding protein 14; 97.0 7E-06 2.4E-10 56.2 -6.2 67 14-87 10-78 (90)
368 2dgu_A Heterogeneous nuclear r 97.0 4.9E-06 1.7E-10 58.5 -7.2 66 15-87 13-80 (103)
369 2l08_A Regulator of nonsense t 96.9 0.0017 5.7E-08 45.2 5.7 72 112-183 9-82 (97)
370 2e44_A Insulin-like growth fac 96.9 1.5E-05 5.2E-10 55.1 -5.2 71 13-86 15-88 (96)
371 2diu_A KIAA0430 protein; struc 96.7 3.6E-05 1.2E-09 53.6 -4.1 64 16-88 12-82 (96)
372 2bz2_A Negative elongation fac 96.7 6.7E-05 2.3E-09 54.5 -2.9 66 15-87 41-108 (121)
373 1x5p_A Negative elongation fac 96.6 3.2E-05 1.1E-09 53.6 -5.2 65 15-86 17-83 (97)
374 1wwh_A Nucleoporin 35, nucleop 96.6 0.015 5E-07 42.0 8.5 71 111-190 23-94 (119)
375 3tht_A Alkylated DNA repair pr 96.3 0.00018 6.2E-09 61.6 -3.2 59 15-78 20-82 (345)
376 3ctr_A Poly(A)-specific ribonu 96.3 0.006 2E-07 42.5 4.8 54 113-175 7-60 (101)
377 2dit_A HIV TAT specific factor 96.2 0.00018 6E-09 51.3 -3.3 56 30-86 41-98 (112)
378 3u1l_A PRE-mRNA-splicing facto 96.1 9.8E-05 3.3E-09 60.2 -5.8 60 15-77 136-204 (240)
379 3pq1_A Poly(A) RNA polymerase; 95.7 0.0056 1.9E-07 54.3 3.4 54 113-172 54-107 (464)
380 1jmt_A Splicing factor U2AF 35 95.6 0.0018 6E-08 45.6 -0.3 35 50-84 65-100 (104)
381 2pe8_A Splicing factor 45; RRM 95.6 0.002 7E-08 45.4 -0.1 74 15-88 10-92 (105)
382 2d9o_A DNAJ (HSP40) homolog, s 95.5 0.00079 2.7E-08 47.3 -2.5 65 17-84 11-84 (100)
383 3v4m_A Splicing factor U2AF 65 95.0 0.0043 1.5E-07 43.7 0.1 57 31-87 31-94 (105)
384 3p3d_A Nucleoporin 53; structu 94.5 0.056 1.9E-06 39.5 5.0 77 113-192 8-98 (132)
385 3s6e_A RNA-binding protein 39; 94.4 0.012 4E-07 42.2 1.1 49 39-88 42-91 (114)
386 3ue2_A Poly(U)-binding-splicin 93.2 0.0079 2.7E-07 43.3 -1.6 37 51-87 69-106 (118)
387 3dxb_A Thioredoxin N-terminall 89.5 0.069 2.4E-06 42.1 0.1 38 50-87 172-210 (222)
388 3d45_A Poly(A)-specific ribonu 85.2 2.7 9.3E-05 37.5 7.9 55 112-175 440-494 (507)
389 2dhx_A Poly (ADP-ribose) polym 80.8 0.078 2.7E-06 37.1 -3.1 93 9-125 4-99 (104)
390 2dnr_A Synaptojanin-1; RRM dom 76.7 0.55 1.9E-05 32.0 0.2 31 54-84 50-80 (91)
391 1owx_A Lupus LA protein, SS-B, 72.3 0.43 1.5E-05 34.4 -1.4 62 15-81 20-87 (121)
392 1ufw_A Synaptojanin 2; RNP dom 61.6 1.2 3.9E-05 30.6 -0.8 41 39-84 49-89 (95)
393 1xn9_A 30S ribosomal protein S 41.7 48 0.0017 22.7 4.9 48 122-170 28-80 (101)
394 1ywx_A 30S ribosomal protein S 40.9 58 0.002 22.3 5.2 47 122-169 28-79 (102)
395 2v94_A RPS24, 30S ribosomal pr 37.4 62 0.0021 22.4 4.9 46 123-169 38-88 (107)
396 2g0c_A ATP-dependent RNA helic 33.6 16 0.00056 23.1 1.4 59 123-191 12-75 (76)
397 2xzm_P RPS24E; ribosome, trans 28.8 1.5E+02 0.005 21.8 5.9 46 123-169 32-82 (149)
398 3u5c_Y RP50, 40S ribosomal pro 28.4 1.7E+02 0.0057 21.1 6.7 46 123-169 34-84 (135)
399 3fut_A Dimethyladenosine trans 25.5 54 0.0019 26.4 3.4 34 113-147 111-144 (271)
400 2g1d_A 30S ribosomal protein S 25.0 56 0.0019 22.2 2.9 46 123-169 30-80 (98)
401 2i9x_A Putative septation prot 22.9 1.2E+02 0.004 20.1 4.1 26 138-163 5-30 (87)
402 4e8u_A Putative uncharacterize 21.9 2.5E+02 0.0087 21.0 7.1 56 114-172 14-81 (172)
403 3uzu_A Ribosomal RNA small sub 20.3 33 0.0011 27.8 1.1 35 113-147 115-149 (279)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.2e-27 Score=200.88 Aligned_cols=172 Identities=15% Similarity=0.099 Sum_probs=148.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCCCCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhhH
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEEE 93 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (222)
..||.||++.+ +++.|...|..--+....+ +.++|||||+|.++++|..| ..+++..+.++......
T Consensus 24 ~l~V~nLp~~~--te~~l~~~F~~~Gi~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~------- 91 (284)
T 3smz_A 24 KILIRGLPGDV--TNQEVHDLLSDYELKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL------- 91 (284)
T ss_dssp EEEEECCCTTC--CHHHHHHHTTTSCEEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-------
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHcCCEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe-------
Confidence 57899999998 8989999996533333333 58899999999999999999 56799998887665432
Q ss_pred HHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHH
Q 027505 94 EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (222)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~ 173 (222)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.
T Consensus 92 ---------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 92 ---------------QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp ---------------CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred ---------------cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHH
Confidence 12457899999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCCeecCCcEEEEEEeccCCCCCCCCCceeEEecCCcCcc
Q 027505 174 FDGSVSADGICIAIVLIEPFNCQHFGNGRCLVFLSYIILDV 214 (222)
Q Consensus 174 l~g~~~~~gr~i~v~~a~~~~~~~~~~~r~~l~vgnl~~~v 214 (222)
|+|..+ +|+.|.|.++.+............|||+|||+++
T Consensus 157 l~~~~~-~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~ 196 (284)
T 3smz_A 157 LLGKPL-GPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGF 196 (284)
T ss_dssp HTTCEE-TTEECEEEECCGGGCCTTTTSCSEEEEECCCTTC
T ss_pred hCCCEe-CCcEEEEEECCCCCCCcccCCccEEEEecCCccc
Confidence 999999 8999999999987765555667889999999997
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-27 Score=183.83 Aligned_cols=160 Identities=20% Similarity=0.279 Sum_probs=134.7
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhhh-ccCCCcccCCCCCCcchhhhh
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSA-SFDGFQVTEDSQDEPETEQEE 91 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~-~~~~~~~~~~~~~~~~~~~~~ 91 (222)
.||.||++++ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..|. .+++..+.++..........
T Consensus 3 l~V~nlp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~- 79 (166)
T 3md3_A 3 LYVGNLDKAI--TEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS- 79 (166)
T ss_dssp EEEEEEETTC--CHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred EEECCCCCcC--CHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC-
Confidence 5799999998 88899999855 45555555433 678999999999999999995 88999998876655332211
Q ss_pred hHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q 027505 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171 (222)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al 171 (222)
........++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+
T Consensus 80 -------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 80 -------------QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp -------------CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred -------------CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 1123445779999999999999999999999999999999999889999999999999999999999
Q ss_pred HHhCCCeecCCcEEEEEEecc
Q 027505 172 RLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 172 ~~l~g~~~~~gr~i~v~~a~~ 192 (222)
+.|||..+ +|++|.|.||++
T Consensus 147 ~~l~g~~~-~g~~i~v~~a~~ 166 (166)
T 3md3_A 147 DSMQGQDL-NGRPLRINWAAK 166 (166)
T ss_dssp HHHTTCEE-TTEECEEEESCC
T ss_pred HHhCCCcc-CCcEEEEEecCC
Confidence 99999999 999999999864
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=8.7e-28 Score=194.46 Aligned_cols=170 Identities=14% Similarity=0.189 Sum_probs=134.2
Q ss_pred hhhcccchh-hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccC
Q 027505 6 VSMAASSSL-CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTE 79 (222)
Q Consensus 6 ~~~~~~~~~-~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~ 79 (222)
..+..+.|. +.||.||++++ +++.|...|.. .++..+++... ++++|||||+|.+.++|..| ..+++..+.+
T Consensus 7 ~p~~p~~p~~tlfVgnLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 7 NPSAPSYPMASLYVGDLHPDV--TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp --------CCEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCcEEEEeCCCCCC--CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 333334454 57999999998 99999999955 56666666543 68899999999999999999 6778888888
Q ss_pred CCCCCcchhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEE
Q 027505 80 DSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159 (222)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV 159 (222)
+............... ...++|||+|||+.+++++|+++|++||.|..++|++|. +.++|||||
T Consensus 85 ~~i~~~~~~~~~~~~~--------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV 148 (213)
T 4f02_A 85 KPVRIMWSQRDPSLRK--------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFV 148 (213)
T ss_dssp EECEEEECCCCTHHHH--------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEE
T ss_pred cccccccccccccccc--------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEE
Confidence 7665433322221111 134689999999999999999999999999999999985 558999999
Q ss_pred EECCHHHHHHHHHHhCCCeecCCcEEEEEEeccCC
Q 027505 160 TMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 160 ~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
+|.+.++|++|++.|||..| +||+|.|.+|+++.
T Consensus 149 ~f~~~~~a~~Ai~~lng~~~-~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 149 HFETQEAAERAIEKMNGMLL-NDRKVFVGRFKSRK 182 (213)
T ss_dssp EESSHHHHHHHHHHHTTCEE-TTEECEEEECCCHH
T ss_pred EeCCHHHHHHHHHHhCCCEE-CCEEEEEEEcCCCc
Confidence 99999999999999999999 99999999998754
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=4.3e-27 Score=189.37 Aligned_cols=173 Identities=10% Similarity=0.151 Sum_probs=138.7
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhc-cCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSAS-FDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~-~~~~~~~~~~~~~~~~~~ 89 (222)
..||.||++.+ +++.|...|.. .++..+++... +.++|||||+|.+.++|..|.. +++..+.++...+.....
T Consensus 30 ~l~V~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 30 RVYVGSIYYEL--GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp EEEEECCCTTC--CHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred EEEEECCCCCC--CHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 67899999998 99999999955 45555555443 6789999999999999999954 899999988776543322
Q ss_pred hhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
.......... ........++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+
T Consensus 108 ~~~~~~~~~~-----~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 108 IGQAQPIIDQ-----LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CGGGHHHHHH-----HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ccccchhhhh-----hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 2211111000 01122356799999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCCeecCCcEEEEEEeccCCC
Q 027505 170 AIRLFDGSVSADGICIAIVLIEPFNC 195 (222)
Q Consensus 170 Al~~l~g~~~~~gr~i~v~~a~~~~~ 195 (222)
|++.|||..+ +|+.|.|.++.+...
T Consensus 183 A~~~l~g~~~-~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 183 AVSSMNLFDL-GGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHTTCBC-SSSBCEEEECSSCSS
T ss_pred HHHHccCCEe-CCcEEEEEEecCCCC
Confidence 9999999999 999999999988654
No 5
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=1.7e-27 Score=184.34 Aligned_cols=159 Identities=20% Similarity=0.238 Sum_probs=132.1
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 90 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..|... ++.+.++..........
T Consensus 5 ~l~v~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 5 KMFIGGLNWDT--TEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp EEEECSCCTTC--CHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCCH
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccch
Confidence 46899999998 99999999965 45555555443 78999999999999999999653 56677776655433322
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
... ...++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|
T Consensus 82 ~~~----------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 82 DEQ----------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp HHH----------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred hhc----------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 111 1245899999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhCCCeecCCcEEEEEEeccCC
Q 027505 171 IRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 171 l~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
++ ++|..+ +|++|.|.+|.|+.
T Consensus 146 ~~-~~~~~~-~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 146 CQ-NKFIDF-KDRKIEIKRAEPRH 167 (167)
T ss_dssp HH-CSEECS-SSSCEEEEECCCCC
T ss_pred Hh-CCCEEe-CCeEEEEeecCCCC
Confidence 98 899998 99999999999863
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=1.6e-27 Score=189.08 Aligned_cols=168 Identities=14% Similarity=0.157 Sum_probs=133.0
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQE 90 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 90 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..|...++..+.++...+......
T Consensus 15 ~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 15 KLFIGGLSFET--TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp EEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 67899999998 99999999965 45555555443 67899999999999999999877888888877655433222
Q ss_pred hhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
... ..+......++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|
T Consensus 93 ~~~----------~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 93 EDS----------QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp --------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred ccc----------cccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 111 1112233568999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhCCCeecCCcEEEEEEeccCCCC
Q 027505 171 IRLFDGSVSADGICIAIVLIEPFNCQ 196 (222)
Q Consensus 171 l~~l~g~~~~~gr~i~v~~a~~~~~~ 196 (222)
+.. +|..+ +|+.|.|.++.++...
T Consensus 163 ~~~-~~~~~-~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 163 VIQ-KYHTV-NGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHC-SCCEE-TTEECEEEECC-----
T ss_pred HHh-CCcEE-CCEEEEEEecCChhHh
Confidence 995 78888 9999999999987653
No 7
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=3.2e-27 Score=199.10 Aligned_cols=175 Identities=13% Similarity=0.133 Sum_probs=141.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhhhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEE 92 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (222)
+.||.||++.+ +++.|...|.. .++..+.+... ..++|||||+|.+.++|..|..+++..+.++.......
T Consensus 43 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~----- 115 (292)
T 2ghp_A 43 TVLVKNLPKSY--NQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL----- 115 (292)
T ss_dssp EEEEEEECTTC--CHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC-----
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC-----
Confidence 67899999998 99999999955 46566665543 34689999999999999999889999888876654321
Q ss_pred HHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHH
Q 027505 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171 (222)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G-~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al 171 (222)
..++|||+|||+.+++++|+++|++|| .|..+.++.++ .|+++|||||+|.+.++|.+|+
T Consensus 116 ------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 116 ------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp ------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHH
T ss_pred ------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHH
Confidence 367999999999999999999999999 99999999987 5889999999999999999999
Q ss_pred HHhCCCeecCCcEEEEEEeccCCCCC----CCCCceeEEecCCcCc-ccc
Q 027505 172 RLFDGSVSADGICIAIVLIEPFNCQH----FGNGRCLVFLSYIILD-VHS 216 (222)
Q Consensus 172 ~~l~g~~~~~gr~i~v~~a~~~~~~~----~~~~r~~l~vgnl~~~-v~~ 216 (222)
+.|+|..+ +|+.|.|.++.|..... .......|||+|||++ ++.
T Consensus 177 ~~l~g~~~-~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~ 225 (292)
T 2ghp_A 177 EKLNGLKI-EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDE 225 (292)
T ss_dssp HHHTTCEE-TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCH
T ss_pred HHhCCCEe-CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCH
Confidence 99999999 89999999998865432 2345678999999998 653
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=2.3e-27 Score=188.53 Aligned_cols=178 Identities=13% Similarity=0.152 Sum_probs=137.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCCC---------CCCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTK---------SPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~---------p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~ 85 (222)
..||.||++.+ +++.|...|... |..++.-...++++|||||+|.+.++|+.|..+++..+.++...+.
T Consensus 6 ~l~V~nLp~~~--te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~ 83 (198)
T 2yh0_A 6 RLYVGNIPFGI--TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 83 (198)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEE
T ss_pred EEEEcCCCCCC--CHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEe
Confidence 56799999998 898999888541 1112222222578999999999999999999889998888866543
Q ss_pred chhhhhhHHHHhh----hhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEE
Q 027505 86 ETEQEEEEEEEAV----EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161 (222)
Q Consensus 86 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f 161 (222)
............. ..............++|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f 163 (198)
T 2yh0_A 84 RPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 163 (198)
T ss_dssp CCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred CCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEE
Confidence 3222110000000 000011122235678999999999999999999999999999999999988999999999999
Q ss_pred CCHHHHHHHHHHhCCCeecCCcEEEEEEeccCCC
Q 027505 162 GSVEEAKEAIRLFDGSVSADGICIAIVLIEPFNC 195 (222)
Q Consensus 162 ~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~~~ 195 (222)
.+.++|.+|++.|||..+ +|+.|.|.+++|+..
T Consensus 164 ~~~~~a~~A~~~l~g~~~-~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 164 VDINVTDQAIAGLNGMQL-GDKKLLVQRASVGAK 196 (198)
T ss_dssp SSSSHHHHHHHHHTTCEE-TTEECEEEESCCCCC
T ss_pred CCHHHHHHHHHHcCCCEE-CCEEEEEEECCCCCC
Confidence 999999999999999999 999999999998654
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=6.8e-27 Score=181.82 Aligned_cols=157 Identities=15% Similarity=0.209 Sum_probs=130.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCCC---------CCCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTK---------SPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~---------p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~ 85 (222)
..||.||++.+ +++.|...|... |..++.-...++++|||||+|.++++|..|..+++..+.++.....
T Consensus 6 ~l~V~nLp~~~--t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 83 (172)
T 2g4b_A 6 RLYVGNIPFGI--TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 83 (172)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred EEEEcCCCccc--CHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeec
Confidence 46799999998 888998888541 1012222222578999999999999999999899999988876553
Q ss_pred chhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHH
Q 027505 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165 (222)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~ 165 (222)
.... .......++|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.+
T Consensus 84 ~~~~----------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 84 RPHD----------------YQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp CCSS----------------CCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred CCcc----------------cCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 2211 111234688999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 166 EAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 166 ~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+|.+|++.|||..+ +|++|.|.+|
T Consensus 148 ~A~~A~~~l~g~~~-~g~~l~V~~A 171 (172)
T 2g4b_A 148 VTDQAIAGLNGMQL-GDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHHHTTCEE-TTEECEEEEC
T ss_pred HHHHHHHHcCCCEE-CCeEEEEEeC
Confidence 99999999999999 8999999987
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.92 E-value=3.5e-26 Score=176.93 Aligned_cols=157 Identities=22% Similarity=0.325 Sum_probs=131.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCcccccc---CCCCCCcccccccchhhhhhhh-ccCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEK---AQNPSALHLSLLSLSYFRQFSA-SFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~---~~~s~gf~fv~~~~~~~a~~a~-~~~~~~~~~~~~~~~~~~~ 89 (222)
+.||.||++.+ +++.|...|.. .++....+.. .+.++|||||+|.+.++|..|. .+++..+.++.........
T Consensus 5 ~l~v~nlp~~~--~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 5 NLIVNYLPQDM--TDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp EEEEECCCTTC--CHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 56799999998 88889999855 4555555443 2578899999999999999995 5899999887665533221
Q ss_pred hhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
. ......++|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+
T Consensus 83 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 83 G----------------GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp C----------------SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred C----------------cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 1 122356799999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCCeecCC--cEEEEEEe
Q 027505 170 AIRLFDGSVSADG--ICIAIVLI 190 (222)
Q Consensus 170 Al~~l~g~~~~~g--r~i~v~~a 190 (222)
|++.|||..+ +| ++|.|.+|
T Consensus 147 A~~~l~g~~~-~g~~~~l~V~~A 168 (168)
T 1b7f_A 147 AISALNNVIP-EGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTTCCC-TTCSSCCEEEEC
T ss_pred HHHHhcCCEe-cCCCeEEEEEeC
Confidence 9999999998 78 89999886
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=9.6e-26 Score=175.40 Aligned_cols=162 Identities=13% Similarity=0.187 Sum_probs=127.0
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--C---CCCCcccccccchhhhhhh-hccCCCcccCCC-CCCc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--Q---NPSALHLSLLSLSYFRQFS-ASFDGFQVTEDS-QDEP 85 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~---~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~-~~~~ 85 (222)
-..||.||++.+ +++.|...|.. .++..+++... . .++|||||+|.+.++|..| ..+++..+.+.. ....
T Consensus 4 ~~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 4 IKMFVGQVPRTW--SEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp EEEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred eEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 367899999998 99999999954 45555555544 2 6889999999999999999 567877654321 1111
Q ss_pred chhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHH
Q 027505 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVE 165 (222)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~ 165 (222)
..... .........++|||+|||+.+++++|+++|++||.|.++.++++. +|+++|||||+|.+.+
T Consensus 82 ~~~~~-------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 82 MKPAD-------------SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEECG-------------GGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHH
T ss_pred Ecccc-------------ccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHH
Confidence 11100 001122346789999999999999999999999999999999997 7999999999999999
Q ss_pred HHHHHHHHhCCCeecC--CcEEEEEEec
Q 027505 166 EAKEAIRLFDGSVSAD--GICIAIVLIE 191 (222)
Q Consensus 166 ~a~~Al~~l~g~~~~~--gr~i~v~~a~ 191 (222)
+|.+|++.|||..+.+ |++|.|.+|.
T Consensus 148 ~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 148 MAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999998855 3999999873
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.92 E-value=6.3e-26 Score=175.00 Aligned_cols=157 Identities=24% Similarity=0.332 Sum_probs=130.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCcccccc---CCCCCCcccccccchhhhhhhh-ccCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEK---AQNPSALHLSLLSLSYFRQFSA-SFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~---~~~s~gf~fv~~~~~~~a~~a~-~~~~~~~~~~~~~~~~~~~ 89 (222)
+.||.||++.+ +++.|...|.. .++..+.+.. .+.++|||||+|.++++|..|. .+++..+.++.........
T Consensus 4 ~l~v~nlp~~~--~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 4 NLIVNYLPQNM--TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEcCCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 46799999998 88899998855 4555555443 2678899999999999999995 5899998887665533321
Q ss_pred hhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
. ......++|||+|||+.+++++|+++|++||.|..++++.+..+|+++|||||+|.+.++|.+
T Consensus 82 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 82 S----------------SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp C----------------CGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred C----------------cccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 1 112245789999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCCeecCCcE--EEEEEe
Q 027505 170 AIRLFDGSVSADGIC--IAIVLI 190 (222)
Q Consensus 170 Al~~l~g~~~~~gr~--i~v~~a 190 (222)
|++.|||..+ +|+. |.|.||
T Consensus 146 A~~~l~g~~~-~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKP-SGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCC-TTCSSCCEEEEC
T ss_pred HHHHhcCCcc-CCCccceEEEeC
Confidence 9999999999 8864 788775
No 13
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=2.1e-24 Score=158.54 Aligned_cols=102 Identities=20% Similarity=0.338 Sum_probs=75.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
..+|||+|||+++++++|+++|++||.|.+++|++|. +++||||||+|.+.++|++|++.|+|..+ +||+|.|.+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~-~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE-TTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE-CCEEEEEEECC
Confidence 4689999999999999999999999999999999985 55899999999999999999999999999 99999999998
Q ss_pred cCCCCCC-----CCCceeEEecCCcCcccc
Q 027505 192 PFNCQHF-----GNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 192 ~~~~~~~-----~~~r~~l~vgnl~~~v~~ 216 (222)
++..+.. ......|||+||+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~ 111 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTR 111 (115)
T ss_dssp CCCC--------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccc
Confidence 8654221 223467999999998874
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.91 E-value=6.5e-26 Score=177.04 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=127.1
Q ss_pred hhhhhcccceeeecCCCCCCCCCCCC-CC--CCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhh
Q 027505 13 SLCNKLYNLQAITQIPTNHLPSLFKT-KS--PKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 13 ~~~~~~~nlsf~t~~~~~~l~~~f~~-~p--~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 89 (222)
.-+.||.||++.+ +++.|+..|.. .+ ...+.-...+.++|||||+|.+.++|..|..+++..+.++...+.....
T Consensus 13 ~~~l~V~nLp~~~--t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 13 PFNLFIGNLNPNK--SVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp SEEEEEECCCTTS--CHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCC--CHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence 4467899999998 88888776643 11 0111222236899999999999999999988999999888765543322
Q ss_pred hhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
.. .......++|||+|||+.+++++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+
T Consensus 91 ~~--------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~ 151 (175)
T 1fje_B 91 RD--------------SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEK 151 (175)
T ss_dssp SS--------------CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHH
T ss_pred cc--------------ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHH
Confidence 11 1122346799999999999999999999999988766 3489999999999999999999
Q ss_pred HHHHhCCCeecCCcEEEEEEeccCC
Q 027505 170 AIRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 170 Al~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
|++.|||..+ +|+.|.|.++.|++
T Consensus 152 A~~~l~g~~~-~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 152 NLEEKQGAEI-DGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHTEEEE-TTEEEEEEECSSCC
T ss_pred HHHHhCCCEE-CCeEEEEEecCCCC
Confidence 9999999999 89999999998853
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.90 E-value=4.7e-25 Score=185.78 Aligned_cols=168 Identities=12% Similarity=0.165 Sum_probs=131.7
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-C-CCCccccccC--CCCCCcccccccchhhhhhhhc-cCCCcccCCCCCCcchh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-K-SPKPLKLEKA--QNPSALHLSLLSLSYFRQFSAS-FDGFQVTEDSQDEPETE 88 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~-p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~-~~~~~~~~~~~~~~~~~ 88 (222)
-..||.||++.+ +++.|...|.. . ++..+.+... +.++|||||+|.+.++|..|.. +++..+.++...+....
T Consensus 118 ~~l~v~nlp~~~--t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 118 CTLWMTNFPPSY--TQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CEEEEECCCTTC--CHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEECCCCCC--CHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 367899999998 88888888844 4 6666666554 5789999999999999999954 99999988776654433
Q ss_pred hhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCC-CCHHHHHHHHHccCCeeEEEEeecCC-CCCcccEEEEEECCHHH
Q 027505 89 QEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRV-TDRSRGFGFVTMGSVEE 166 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~-~t~~~L~~~F~~~G~i~~~~l~~d~~-tg~~rG~aFV~f~~~~~ 166 (222)
........ .......++|||+|||+. +++++|+++|++||.|..++++.+.. ||+++|||||+|.+.++
T Consensus 196 ~~~~~~~~---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~ 266 (292)
T 2ghp_A 196 PLEKSKRT---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 266 (292)
T ss_dssp CC------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHH
T ss_pred CCcccccc---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHH
Confidence 22111100 123446789999999999 99999999999999999999999875 59999999999999999
Q ss_pred HHHHHHHhCCCeecCCcEEEEEEeccCC
Q 027505 167 AKEAIRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 167 a~~Al~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
|.+|+ .|||..+ +|++|.|.++++++
T Consensus 267 A~~A~-~l~g~~~-~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 267 AERAL-QMNRSLL-GNREISVSLADKKP 292 (292)
T ss_dssp HHHHG-GGTTEEE-TTEEEEEEECCCCC
T ss_pred HHHHH-HhcCCEE-CCcEEEEEEecCCC
Confidence 99999 9999999 99999999998863
No 16
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=150.24 Aligned_cols=82 Identities=30% Similarity=0.506 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
..+++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.++|++|++.|||..+ +||+|+|.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL-QSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE-CCEEEEEEE
Confidence 3567899999999999999999999999999999999998999999999999999999999999999999 899999999
Q ss_pred ecc
Q 027505 190 IEP 192 (222)
Q Consensus 190 a~~ 192 (222)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 988
No 17
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=4.4e-24 Score=164.77 Aligned_cols=141 Identities=20% Similarity=0.223 Sum_probs=104.2
Q ss_pred CCCCCcccccccchhhhhhhh-ccCCC-cccCCCCCCcchhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHH
Q 027505 50 QNPSALHLSLLSLSYFRQFSA-SFDGF-QVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSS 127 (222)
Q Consensus 50 ~~s~gf~fv~~~~~~~a~~a~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~ 127 (222)
.+++|||||+|.++++|+.+. .+++. ..++..... ...... ..................++|||+|||++++++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 85 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYD-DATKTF---TVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPD 85 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEE-TTTTEE---EEECCCCCSSCCCCCCBCCEEEEESCCTTCCHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCccccc-Cccccc---cccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 378999999999999999883 32221 111110000 000000 000000111122233457899999999999999
Q ss_pred HHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEeccCCC
Q 027505 128 SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFNC 195 (222)
Q Consensus 128 ~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~~~ 195 (222)
+|+++|++||.|..+.|++|+.+|+++|||||+|.+.++|++|++.|||..+ +|++|.|.++++..+
T Consensus 86 ~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 86 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL-DGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES-SSSEEEEEEECCSSC
T ss_pred HHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE-CCeEEEEEECCCCCC
Confidence 9999999999999999999988999999999999999999999999999998 999999999998654
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.90 E-value=5.6e-24 Score=178.37 Aligned_cols=169 Identities=12% Similarity=0.169 Sum_probs=128.8
Q ss_pred hhhcccceeeecCCCCCCC----CCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 15 CNKLYNLQAITQIPTNHLP----SLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~----~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
..||.||++.+ +++.|+ ..|.. .++..+.+...++++|||||+|.+.++|..| ..+++..+.++...+....
T Consensus 11 ~l~V~nlp~~~--~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 11 TIYINNLNEKI--KKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 56799999998 888865 67754 4666666666678999999999999999999 5889998888765543322
Q ss_pred hhhhH-----------H----HHhhh-------hccc-------------------------------------------
Q 027505 89 QEEEE-----------E----EEAVE-------EEEE------------------------------------------- 103 (222)
Q Consensus 89 ~~~~~-----------~----~~~~~-------~~~~------------------------------------------- 103 (222)
..... . ..+.. ....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~ 168 (282)
T 3pgw_A 89 TDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG 168 (282)
T ss_pred cCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCC
Confidence 11100 0 00000 0000
Q ss_pred ------------------------------ccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCc
Q 027505 104 ------------------------------PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153 (222)
Q Consensus 104 ------------------------------~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~ 153 (222)
.........++|||+|||+.+++++|+++|++||.|.+++++.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----- 243 (282)
T 3pgw_A 169 MIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----- 243 (282)
T ss_pred CCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----
Confidence 000122346789999999999999999999999999999998654
Q ss_pred ccEEEEEECCHHHHHHHHHHhCCCeecC-CcEEEEEEec
Q 027505 154 RGFGFVTMGSVEEAKEAIRLFDGSVSAD-GICIAIVLIE 191 (222)
Q Consensus 154 rG~aFV~f~~~~~a~~Al~~l~g~~~~~-gr~i~v~~a~ 191 (222)
+|||||+|.+.++|.+|++.|||..+ + |+.|+|.|++
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~-~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKI-TQNNAMKISFAK 281 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEe-CCCCEEEEEEec
Confidence 68999999999999999999999999 7 9999999986
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.89 E-value=1.9e-24 Score=181.42 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=137.0
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCcccccc---CCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEK---AQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~---~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~ 89 (222)
..||.||++.+ +++.|...|.. .++....+.. .+.++|||||+|.+.+++..| ..+++..+.++...+.....
T Consensus 97 ~l~v~nlp~~~--t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 97 LLCVANLPPSL--TQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp EEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred EEEEcCCCCcC--CHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 57899999998 88889888855 4444444433 267899999999999999999 48899999888776644332
Q ss_pred hhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCC-CHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHH
Q 027505 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~-t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~ 168 (222)
.. ........++|||+|||+.+ ++++|+++|++||.|..+.++.+. +|+++|||||+|.+.++|.
T Consensus 175 ~~-------------~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 175 GQ-------------LTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp GG-------------CCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHH
T ss_pred CC-------------CCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHH
Confidence 11 11223457899999999995 999999999999999999999987 8999999999999999999
Q ss_pred HHHHHhCCCeecCCcEEEEEEeccCCC
Q 027505 169 EAIRLFDGSVSADGICIAIVLIEPFNC 195 (222)
Q Consensus 169 ~Al~~l~g~~~~~gr~i~v~~a~~~~~ 195 (222)
+|+..|||..+ +|++|.|.++.++..
T Consensus 241 ~A~~~l~g~~~-~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 241 EAQQQADGLSL-GGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHTTCEE-TTEECEEEECCSSSC
T ss_pred HHHHHhCCCcc-CCeEEEEEEecCCCc
Confidence 99999999999 999999999988653
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=1.1e-23 Score=175.27 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=128.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEE 92 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~ 92 (222)
..||.||++.+ +++.|...|.. .++..+.+ .+++|||||.|.+.++|..| ..+++..+.++...+....
T Consensus 24 ~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i---~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~---- 94 (261)
T 3sde_A 24 RLFVGNLPTDI--TEEDFKRLFERYGEPSEVFI---NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT---- 94 (261)
T ss_dssp EEEEESCCTTC--CHHHHHHHTGGGCCCSEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred EEEEECCCCCC--CHHHHHHHHHhcCCEEEEEE---eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc----
Confidence 57899999998 99999999955 46555555 35689999999999999999 5589999988766553221
Q ss_pred HHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q 027505 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172 (222)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~ 172 (222)
...+|||+|||+.+++++|+++|++||.|..+.++.+. +|+++|||||+|.+.++|.+|+.
T Consensus 95 ------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 95 ------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp ------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHH
T ss_pred ------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHH
Confidence 35689999999999999999999999999999999995 99999999999999999999999
Q ss_pred HhCCCeecC---CcEEEEEEeccCC
Q 027505 173 LFDGSVSAD---GICIAIVLIEPFN 194 (222)
Q Consensus 173 ~l~g~~~~~---gr~i~v~~a~~~~ 194 (222)
.|++..++. ||+|.|.++.+..
T Consensus 156 ~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 156 RCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HhcCCeEEecCCCceEEEeeccccC
Confidence 995544424 8999999997754
No 21
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.88 E-value=5.1e-24 Score=171.74 Aligned_cols=169 Identities=13% Similarity=0.150 Sum_probs=125.0
Q ss_pred hhhcccce-eeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhh
Q 027505 15 CNKLYNLQ-AITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEE 91 (222)
Q Consensus 15 ~~~~~nls-f~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~ 91 (222)
+.||+||+ +.+ +++.|...|.. ..+..+++.. .++|||||+|.+.++|+.| ..++|..+.++.+.+.......
T Consensus 6 ~l~V~nL~~~~~--~~~~L~~~F~~~G~v~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 6 VLMVYGLDQSKM--NCDRVFNVFCLYGNVEKVKFMK--SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp EEEEECCCTTTC--CHHHHHHHHTTTSCEEEEEECT--TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred EEEEeCCCcccC--CHHHHHHHHHhcCCeEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 46799999 887 88889999955 4555555543 3589999999999999999 6799999998876654332111
Q ss_pred hHHHH--hhhh-----c-------cc-------ccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCe--eEEEEeecC
Q 027505 92 EEEEE--AVEE-----E-------EE-------PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTV--ASAEIVYDR 148 (222)
Q Consensus 92 ~~~~~--~~~~-----~-------~~-------~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i--~~~~l~~d~ 148 (222)
..+.. .... . .. .......+.++|||+|||+++++++|+++|++||.| .+++++.+.
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 00000 0000 0 00 000012346789999999999999999999999999 899998775
Q ss_pred CCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc----EEEEEEe
Q 027505 149 VTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI----CIAIVLI 190 (222)
Q Consensus 149 ~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr----~i~v~~a 190 (222)
++.+|||||+|.+.++|.+|+..|||..+ +|+ ++.|.+|
T Consensus 162 --~~~~g~gfV~f~~~~~A~~Ai~~lng~~~-~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 --SERSSSGLLEWDSKSDALETLGFLNHYQM-KNPNGPYPYTLKLC 204 (205)
T ss_dssp --SSSSEEEEEECSSHHHHHHHHHHHTTCEE-CCSSSSSCEECEEE
T ss_pred --CCCceEEEEEeCCHHHHHHHHHHhCCCCc-cCCCCCcceEEEec
Confidence 56679999999999999999999999999 776 5666654
No 22
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.87 E-value=2.3e-23 Score=165.82 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=128.2
Q ss_pred hhhccccee-eecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhhh-ccCCCcccCCCCCCcchhhhh
Q 027505 15 CNKLYNLQA-ITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSA-SFDGFQVTEDSQDEPETEQEE 91 (222)
Q Consensus 15 ~~~~~nlsf-~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~-~~~~~~~~~~~~~~~~~~~~~ 91 (222)
..||.||++ .+ +++.|...|.. .++..+++... .+|||||+|.+.++|..|. .+++..+.++...+.......
T Consensus 5 ~l~v~nlp~~~~--~~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 5 VLLVSNLNPERV--TPQSLFILFGVYGDVQRVKILFN--KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp EEEEECCCSSSC--CHHHHHHHHHTTCCCSEEECSTT--CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred EEEEeCCCcccC--CHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 567999999 87 88889988854 56666655554 3899999999999999995 589999988876654332111
Q ss_pred hHHHH-hhhh------------------cccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCC
Q 027505 92 EEEEE-AVEE------------------EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTD 151 (222)
Q Consensus 92 ~~~~~-~~~~------------------~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G-~i~~~~l~~d~~tg 151 (222)
..... .... ..........+.++|||+|||+.+++++|+++|++|| .|..++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--- 157 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--- 157 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---
Confidence 00000 0000 0000001123478999999999999999999999999 99999996642
Q ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeecC-CcEEEEEEeccC
Q 027505 152 RSRGFGFVTMGSVEEAKEAIRLFDGSVSAD-GICIAIVLIEPF 193 (222)
Q Consensus 152 ~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~-gr~i~v~~a~~~ 193 (222)
+|||||+|.+.++|.+|+..|||..+ + |++|.|.|+++.
T Consensus 158 --~g~afV~f~~~~~A~~A~~~l~g~~~-~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 158 --RKMALIQMGSVEEAVQALIDLHNHDL-GENHHLRVSFSKST 197 (198)
T ss_dssp --SSCEEEECSSHHHHHHHHHHHTSSCC-SSCCSCCEEEECCC
T ss_pred --CcEEEEEeCCHHHHHHHHHHhcCCcc-CCCCeEEEEeeccc
Confidence 79999999999999999999999999 7 999999999874
No 23
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=143.23 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=79.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+.++|||+|||+++++++|+++|++||.|.++.|++|+.+|+++|||||+|.+.++|++|++.|||..+ +||.|.|.++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~-~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV-MGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE-CCeEEEEEEC
Confidence 567999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred ccCC
Q 027505 191 EPFN 194 (222)
Q Consensus 191 ~~~~ 194 (222)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7643
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=142.34 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC-CeecCCcEEEEEE
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG-SVSADGICIAIVL 189 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G-~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g-~~~~~gr~i~v~~ 189 (222)
.++|||+|||+++++++|+++|++|| .|.+|+|++|+.+|++||||||+|.+.++|++|++.+++ ..+ +||+|.|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~-~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI-LGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE-TTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE-CCEEEEEEE
Confidence 36899999999999999999999999 799999999999999999999999999999999998754 456 999999999
Q ss_pred eccCCC
Q 027505 190 IEPFNC 195 (222)
Q Consensus 190 a~~~~~ 195 (222)
|.|++.
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 998664
No 25
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.87 E-value=4.7e-23 Score=168.31 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=127.3
Q ss_pred hhhccccee-eecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhhh-ccCCCcccCCCCCCcchhhhh
Q 027505 15 CNKLYNLQA-ITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSA-SFDGFQVTEDSQDEPETEQEE 91 (222)
Q Consensus 15 ~~~~~nlsf-~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~-~~~~~~~~~~~~~~~~~~~~~ 91 (222)
..||.||++ .+ +++.|...|.. .++..+++... .+|||||+|.+.++|..|. .+++..+.++...+.......
T Consensus 36 ~l~V~nLp~~~~--te~~L~~~F~~~G~i~~v~i~~~--~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 36 VLLVSNLNPERV--TPQSLFILFGVYGDVQRVKILFN--KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp EEEEESCCTTTC--CHHHHHHHHHHHTCEEEEEECCT--TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred EEEEeCCCcccC--CHHHHHHHHHhCCCeEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 677999999 87 88889988854 45555555544 3899999999999999995 589999988876553322110
Q ss_pred hH-----HHHhhh----------hc----ccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCC
Q 027505 92 EE-----EEEAVE----------EE----EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTD 151 (222)
Q Consensus 92 ~~-----~~~~~~----------~~----~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G-~i~~~~l~~d~~tg 151 (222)
.. ...... .. ...........++|||+|||+++++++|+++|++|| .|..++++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---- 187 (229)
T 2adc_A 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---- 187 (229)
T ss_dssp CCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----
T ss_pred ccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----
Confidence 00 000000 00 000001123468999999999999999999999999 9999998653
Q ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeecC-CcEEEEEEeccC
Q 027505 152 RSRGFGFVTMGSVEEAKEAIRLFDGSVSAD-GICIAIVLIEPF 193 (222)
Q Consensus 152 ~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~-gr~i~v~~a~~~ 193 (222)
.+|||||+|.+.++|.+|++.|+|..+ + |++|+|.|++++
T Consensus 188 -~~g~afV~f~~~~~A~~Ai~~l~g~~~-~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 -DRKMALIQMGSVEEAVQALIDLHNHDL-GENHHLRVSFSKST 228 (229)
T ss_dssp -STTCEEEEESSHHHHHHHHHHHTTCBS-SSSCBCEEEECSSC
T ss_pred -CCcEEEEEECCHHHHHHHHHHHCCCcc-CCCCeEEEEEecCC
Confidence 379999999999999999999999999 7 999999999874
No 26
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.86 E-value=6.2e-22 Score=159.95 Aligned_cols=104 Identities=25% Similarity=0.366 Sum_probs=92.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.+++..+ .|+.|++.++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~-~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI-KGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc-CCcccccccc
Confidence 457999999999999999999999999999999999999999999999999999999999999999999 8999999998
Q ss_pred ccCCCCCCCCCceeEEecCCcCcccc
Q 027505 191 EPFNCQHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 191 ~~~~~~~~~~~r~~l~vgnl~~~v~~ 216 (222)
.+..... ..+...|||+||+++++.
T Consensus 93 ~~~~~~~-~~~~~~l~v~nl~~~~t~ 117 (213)
T 4f02_A 93 QRDPSLR-KSGVGNIFIKNLDKSIDN 117 (213)
T ss_dssp CCCTHHH-HHCTTEEEEESCCTTCCH
T ss_pred ccccccc-ccccccceECCcccccHH
Confidence 7644311 123457999999998865
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=134.58 Aligned_cols=82 Identities=28% Similarity=0.432 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+ +|+.|.|.++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL-GGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEEec
Confidence 567899999999999999999999999999999999988999999999999999999999999999999 9999999999
Q ss_pred ccC
Q 027505 191 EPF 193 (222)
Q Consensus 191 ~~~ 193 (222)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 28
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=1.5e-22 Score=155.02 Aligned_cols=137 Identities=16% Similarity=0.176 Sum_probs=105.9
Q ss_pred CCCCcccccccchhhhhhh-hcc-CCCcccCCCCCCcchhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHH
Q 027505 51 NPSALHLSLLSLSYFRQFS-ASF-DGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSS 128 (222)
Q Consensus 51 ~s~gf~fv~~~~~~~a~~a-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~ 128 (222)
..+|+++++|.+.+.|.++ ..+ ++..+++ ................................++|||+|||+++++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 6789999999999999999 566 7888877 444332221110000000011112233445678999999999999999
Q ss_pred HHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEeccCC
Q 027505 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEPFN 194 (222)
Q Consensus 129 L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~~~ 194 (222)
|+++|++||.|.+++++++ ++|||||+|.+.++|.+|+..|||..+ +|++|.|.+++++.
T Consensus 90 l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTL-CGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCS-SSSCCEEEECCCCC
T ss_pred HHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEEEcCCCC
Confidence 9999999999999999876 589999999999999999999999999 89999999998853
No 29
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=136.16 Aligned_cols=88 Identities=25% Similarity=0.401 Sum_probs=82.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...++|||+|||+++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|||..+ +|++|+|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL-AGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS-SSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee-CCcEEEEEE
Confidence 3568999999999999999999999999999999999988999999999999999999999999999999 899999999
Q ss_pred eccCCCCCC
Q 027505 190 IEPFNCQHF 198 (222)
Q Consensus 190 a~~~~~~~~ 198 (222)
++++.....
T Consensus 82 a~~~~~~~~ 90 (95)
T 2dnz_A 82 VTERLDGGS 90 (95)
T ss_dssp SSCCCCCCC
T ss_pred cccccCCCC
Confidence 998775443
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=4.6e-22 Score=141.32 Aligned_cols=82 Identities=18% Similarity=0.367 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCC--eeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCe----ecCCc
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT--VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV----SADGI 183 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~--i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~----~~~gr 183 (222)
..-++|||+|||+++|+++|+++|++||. |.+|++++|+.+|++||||||+|.+.++|++|++.|||.. + +||
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i-~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI-DGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE-TTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE-CCE
Confidence 35579999999999999999999999995 6799999999999999999999999999999999999974 6 899
Q ss_pred EEEEEEecc
Q 027505 184 CIAIVLIEP 192 (222)
Q Consensus 184 ~i~v~~a~~ 192 (222)
+|.|.+|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 31
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.3e-21 Score=139.16 Aligned_cols=89 Identities=25% Similarity=0.386 Sum_probs=82.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|..+.|+.++.+|+++|||||+|.+.++|++|++.|+|..+ +|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY-DHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE-TTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee-CCcEEEE
Confidence 344678999999999999999999999999999999999988999999999999999999999999999999 8999999
Q ss_pred EEeccCCCCC
Q 027505 188 VLIEPFNCQH 197 (222)
Q Consensus 188 ~~a~~~~~~~ 197 (222)
.+++++....
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9999876543
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=3.3e-21 Score=132.68 Aligned_cols=81 Identities=26% Similarity=0.471 Sum_probs=78.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
.+|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|++|++.|||..+ +|++|.|.++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~-~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-NGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE-TTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee-CCcEEEEEecCc
Confidence 5899999999999999999999999999999999988999999999999999999999999999999 899999999988
Q ss_pred CC
Q 027505 193 FN 194 (222)
Q Consensus 193 ~~ 194 (222)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.5e-21 Score=136.55 Aligned_cols=87 Identities=26% Similarity=0.404 Sum_probs=81.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+ +|++|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF-QGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES-SSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE-CCcEEEEEE
Confidence 4578999999999999999999999999999999999988999999999999999999999999999999 899999999
Q ss_pred eccCCCCC
Q 027505 190 IEPFNCQH 197 (222)
Q Consensus 190 a~~~~~~~ 197 (222)
++++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99977543
No 34
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.86 E-value=4.7e-21 Score=147.51 Aligned_cols=101 Identities=24% Similarity=0.390 Sum_probs=92.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|++|++.|+|..+ +|++|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-QTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc-CCceEEEEecC
Confidence 47899999999999999999999999999999999998999999999999999999999999999999 89999999998
Q ss_pred cCCCCCCCCCceeEEecCCcCcccc
Q 027505 192 PFNCQHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 192 ~~~~~~~~~~r~~l~vgnl~~~v~~ 216 (222)
+.... .....|||+|||++++.
T Consensus 81 ~~~~~---~~~~~l~v~nl~~~~t~ 102 (167)
T 1fxl_A 81 PSSAS---IRDANLYVSGLPKTMTQ 102 (167)
T ss_dssp CCCGG---GTTCEEEEESCCTTCCH
T ss_pred CCccc---CCCCcEEECCCCCcCCH
Confidence 75542 24567999999998753
No 35
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=136.59 Aligned_cols=89 Identities=24% Similarity=0.465 Sum_probs=82.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|..+.|+.++.+++++|||||+|.+.++|++|++ |++..+ +|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~-~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI-MGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS-SSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE-CCeEEEE
Confidence 34467899999999999999999999999999999999998899999999999999999999999 999999 8999999
Q ss_pred EEeccCCCCCC
Q 027505 188 VLIEPFNCQHF 198 (222)
Q Consensus 188 ~~a~~~~~~~~ 198 (222)
.+++++.....
T Consensus 84 ~~a~~~~~~~~ 94 (99)
T 2dgs_A 84 KRAEPRDSKSS 94 (99)
T ss_dssp EECCCCCCCCC
T ss_pred EECCCCcccCC
Confidence 99998775443
No 36
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.86 E-value=3.6e-21 Score=148.63 Aligned_cols=102 Identities=21% Similarity=0.328 Sum_probs=93.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|++|++.|+|..+ +|++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV-RNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe-CCcEEEEEec
Confidence 457899999999999999999999999999999999988999999999999999999999999999999 8999999999
Q ss_pred ccCCCCCCCCCceeEEecCCcCcccc
Q 027505 191 EPFNCQHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 191 ~~~~~~~~~~~r~~l~vgnl~~~v~~ 216 (222)
.+.... .....|||+|||++++.
T Consensus 81 ~~~~~~---~~~~~l~v~nl~~~~t~ 103 (168)
T 1b7f_A 81 RPGGES---IKDTNLYVTNLPRTITD 103 (168)
T ss_dssp CCCSST---TTTCEEEEESCCTTCCH
T ss_pred CCCccc---CCCCCEEEeCCCCCCCH
Confidence 885542 34578999999998764
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4e-21 Score=138.21 Aligned_cols=90 Identities=31% Similarity=0.429 Sum_probs=83.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
......++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+ +|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL-YGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC-SSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE-CCeEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999999999999 899999
Q ss_pred EEEeccCCCCC
Q 027505 187 IVLIEPFNCQH 197 (222)
Q Consensus 187 v~~a~~~~~~~ 197 (222)
|.+++++....
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99999876543
No 38
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4e-21 Score=138.44 Aligned_cols=88 Identities=23% Similarity=0.243 Sum_probs=81.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
......++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|+|..+ +|+.|.
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~ 96 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL-MGQPIS 96 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS-SSSBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE-CCcEEE
Confidence 3445678999999999999999999999999999999999998999999999999999999999999999999 899999
Q ss_pred EEEeccCCC
Q 027505 187 IVLIEPFNC 195 (222)
Q Consensus 187 v~~a~~~~~ 195 (222)
|.+++++..
T Consensus 97 V~~a~~~~~ 105 (106)
T 1p27_B 97 VDWCFVRGP 105 (106)
T ss_dssp EEESEESSC
T ss_pred EEeecCCCC
Confidence 999988653
No 39
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=140.38 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=82.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|+|..+ +|+.|.|.++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI-CGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS-SSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE-CCcEEEEEEccC
Confidence 47999999999999999999999999999999876 689999999999999999999999998 899999999988
Q ss_pred CCCCCC-------CCCceeEEecCCc
Q 027505 193 FNCQHF-------GNGRCLVFLSYII 211 (222)
Q Consensus 193 ~~~~~~-------~~~r~~l~vgnl~ 211 (222)
+..... .....+||||||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 75 MPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCcccCCCCCccccCCCceecCCCC
Confidence 653221 1236789999996
No 40
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3e-21 Score=136.58 Aligned_cols=87 Identities=20% Similarity=0.347 Sum_probs=81.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEE-EEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~-~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
..++|||+|||+++++++|+++|++||.|..+ .|++++.+|+++|||||+|.+.++|++|++.|||..+ +|++|.|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL-CNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE-TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE-CCEEEEEEE
Confidence 56899999999999999999999999999999 9999988999999999999999999999999999999 899999999
Q ss_pred eccCCCCCC
Q 027505 190 IEPFNCQHF 198 (222)
Q Consensus 190 a~~~~~~~~ 198 (222)
+.++..+..
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 998775443
No 41
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.85 E-value=3.7e-21 Score=152.27 Aligned_cols=106 Identities=27% Similarity=0.370 Sum_probs=90.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|++|++. ++..+ +|+.|.|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~-~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV-DGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE-TTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE-CCEEeeee
Confidence 34567999999999999999999999999999999999998999999999999999999999985 88888 89999999
Q ss_pred EeccCCCCCC---CCCceeEEecCCcCcccc
Q 027505 189 LIEPFNCQHF---GNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 189 ~a~~~~~~~~---~~~r~~l~vgnl~~~v~~ 216 (222)
++.+...... ......|||+|||++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~ 118 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEE 118 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCH
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCH
Confidence 9977553221 224578999999998864
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.8e-21 Score=135.32 Aligned_cols=87 Identities=24% Similarity=0.419 Sum_probs=81.1
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
......++|||+|||+++++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|++|++.|+|..+ +|++|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~ 89 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI-KENIIK 89 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES-SSCEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE-CCEEEE
Confidence 344567899999999999999999999999999999999998 999999999999999999999999999999 899999
Q ss_pred EEEeccCCC
Q 027505 187 IVLIEPFNC 195 (222)
Q Consensus 187 v~~a~~~~~ 195 (222)
|.+++++..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999998654
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5e-21 Score=137.03 Aligned_cols=89 Identities=33% Similarity=0.576 Sum_probs=82.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+ +|++|.|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV-DGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT-TSCCCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-CCeEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999 89999999
Q ss_pred EeccCCCCCC
Q 027505 189 LIEPFNCQHF 198 (222)
Q Consensus 189 ~a~~~~~~~~ 198 (222)
+++++.....
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 1x5s_A 88 QAGKSSDNRS 97 (102)
T ss_dssp EEECCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9998765443
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-21 Score=137.59 Aligned_cols=89 Identities=28% Similarity=0.407 Sum_probs=82.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.|+.++.+++++|||||+|.+.++|++|++.||+..+ +|++|.|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE-TTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CCcEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999 89999999
Q ss_pred EeccCCCCCC
Q 027505 189 LIEPFNCQHF 198 (222)
Q Consensus 189 ~a~~~~~~~~ 198 (222)
+++++.....
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2cqb_A 88 LAKPMRIKES 97 (102)
T ss_dssp ECCCCCCCCC
T ss_pred eCCCCCCCCC
Confidence 9999775443
No 45
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=6.7e-21 Score=139.43 Aligned_cols=87 Identities=28% Similarity=0.388 Sum_probs=81.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...++|||+|||+++++++|+++|++||.|..++|++++.+++++|||||+|.+.++|++|++.||+..+ +|+.|+|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI-GMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE-TTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE-CCEEEEEEE
Confidence 3567999999999999999999999999999999999998999999999999999999999999999999 899999999
Q ss_pred eccCCCCC
Q 027505 190 IEPFNCQH 197 (222)
Q Consensus 190 a~~~~~~~ 197 (222)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 99876543
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=5.5e-21 Score=132.16 Aligned_cols=82 Identities=29% Similarity=0.411 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|++.|||..+ +|++|+|.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE-CCcEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999 89999999
Q ss_pred Eec
Q 027505 189 LIE 191 (222)
Q Consensus 189 ~a~ 191 (222)
+|+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=7.2e-22 Score=138.56 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=72.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccC--CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G--~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
.+|||+|||+++++++|+++|++|| .|.++++++++.+|+++|||||+|.+.++|++|++.|||..+ +||.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~-~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL-HGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS-SSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee-CCEEEEEEEC
Confidence 4799999999999999999999999 999999999999999999999999999999999999999999 8999999999
Q ss_pred ccCCC
Q 027505 191 EPFNC 195 (222)
Q Consensus 191 ~~~~~ 195 (222)
.|...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 88654
No 48
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.6e-20 Score=137.38 Aligned_cols=88 Identities=25% Similarity=0.380 Sum_probs=82.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+.+++++|+++|++||.|..+.|++++.+|+++|||||+|.+.++|++|++.|+|..+ +|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL-GGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE-TTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CCEEEEE
Confidence 344678999999999999999999999999999999999988999999999999999999999999999999 8999999
Q ss_pred EEeccCCCC
Q 027505 188 VLIEPFNCQ 196 (222)
Q Consensus 188 ~~a~~~~~~ 196 (222)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999886643
No 49
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=137.71 Aligned_cols=89 Identities=28% Similarity=0.359 Sum_probs=82.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|..+.|+.++.+++++|||||+|.+.++|++|++.|||..+ +|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL-DGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB-TTBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE-CCcEEEE
Confidence 345678999999999999999999999999999999999998899999999999999999999999999999 8999999
Q ss_pred EEeccCCCCC
Q 027505 188 VLIEPFNCQH 197 (222)
Q Consensus 188 ~~a~~~~~~~ 197 (222)
.++++.....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dnm_A 88 QVARYGRRDL 97 (103)
T ss_dssp EECSSCCSCC
T ss_pred EECCcCCCCC
Confidence 9998865433
No 50
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=8e-21 Score=134.62 Aligned_cols=83 Identities=20% Similarity=0.454 Sum_probs=79.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|+|..+ +|+.|.|.+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL-GSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE-CCeEEEEEEcC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999 89999999998
Q ss_pred cCCC
Q 027505 192 PFNC 195 (222)
Q Consensus 192 ~~~~ 195 (222)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8653
No 51
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.1e-20 Score=135.65 Aligned_cols=88 Identities=25% Similarity=0.499 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++|| |..+.|++++.+|+++|||||+|.+.++|++|+ .||+..+ +|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL-GDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE-TTEECEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE-CCeEEEE
Confidence 344578999999999999999999999997 999999999989999999999999999999999 7999999 8999999
Q ss_pred EEeccCCCCCC
Q 027505 188 VLIEPFNCQHF 198 (222)
Q Consensus 188 ~~a~~~~~~~~ 198 (222)
.+++++.....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2dng_A 88 DIAEGRKQDKS 98 (103)
T ss_dssp EECCCCCCCCS
T ss_pred EEecCCCCCCC
Confidence 99998765443
No 52
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=7.6e-21 Score=137.97 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=82.1
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
......++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|+..|+|..+ +|+.|.
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~ 99 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-MGQTIQ 99 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE-TTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE-CCcEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999999999999 899999
Q ss_pred EEEeccCCC
Q 027505 187 IVLIEPFNC 195 (222)
Q Consensus 187 v~~a~~~~~ 195 (222)
|.+++++..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999988654
No 53
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=8.8e-21 Score=145.82 Aligned_cols=101 Identities=21% Similarity=0.349 Sum_probs=91.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
++|||+|||+++++++|+++|++||.|.++.+++++ +|+++|||||+|.+.++|.+|++.|+|..+ +|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQI-ENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc-CCCeeEEEEcCC
Confidence 479999999999999999999999999999999997 688999999999999999999999999999 899999999988
Q ss_pred CCCCCCCCCceeEEecCCcCcccc
Q 027505 193 FNCQHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 193 ~~~~~~~~~r~~l~vgnl~~~v~~ 216 (222)
... ........|||+|||++++.
T Consensus 79 ~~~-~~~~~~~~l~v~nl~~~~t~ 101 (166)
T 3md3_A 79 SQQ-SSSDDTFNLFVGDLNVNVDD 101 (166)
T ss_dssp CCC-CCCTTCEEEEEESCCTTCCH
T ss_pred CCC-CCCCCCceEEECCCCCCCCH
Confidence 654 33456778999999998864
No 54
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=136.82 Aligned_cols=89 Identities=20% Similarity=0.324 Sum_probs=82.5
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC------CCeec
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD------GSVSA 180 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~------g~~~~ 180 (222)
......++|||+|||+++++++|+++|++||.|..|.|++++.+|+++|||||+|.+.++|++|++.|+ +..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~- 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL- 88 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES-
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE-
Confidence 344567899999999999999999999999999999999999899999999999999999999999999 9998
Q ss_pred CCcEEEEEEeccCCCC
Q 027505 181 DGICIAIVLIEPFNCQ 196 (222)
Q Consensus 181 ~gr~i~v~~a~~~~~~ 196 (222)
+|++|.|.++.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999886653
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=136.09 Aligned_cols=89 Identities=19% Similarity=0.355 Sum_probs=82.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeec-CCCCCcccEEEEEECCHHHHHHHHHHh-CCCeecCCcEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD-RVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSVSADGICI 185 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d-~~tg~~rG~aFV~f~~~~~a~~Al~~l-~g~~~~~gr~i 185 (222)
.....++|||+|||+.+++++|+++|++||.|..+.|+.+ +.+|+++|||||+|.+.++|++|++.| |+..+ +|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL-YGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS-SSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE-CCCEE
Confidence 3456789999999999999999999999999999999998 778999999999999999999999999 99999 89999
Q ss_pred EEEEeccCCCCC
Q 027505 186 AIVLIEPFNCQH 197 (222)
Q Consensus 186 ~v~~a~~~~~~~ 197 (222)
.|.+++++....
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999999876543
No 56
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.7e-20 Score=134.98 Aligned_cols=86 Identities=20% Similarity=0.324 Sum_probs=80.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCC---cEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADG---ICIA 186 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~g---r~i~ 186 (222)
...++|||+|||+++++++|+++|++||.|..+.|+.++ +|+++|||||+|.+.++|++|++.|||..+ .| +.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQT-MPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCC-CTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCcc-CCCCCccEE
Confidence 457899999999999999999999999999999999998 899999999999999999999999999998 66 9999
Q ss_pred EEEeccCCCCC
Q 027505 187 IVLIEPFNCQH 197 (222)
Q Consensus 187 v~~a~~~~~~~ 197 (222)
|.+++++..+.
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99999876543
No 57
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.84 E-value=2.4e-20 Score=138.13 Aligned_cols=86 Identities=20% Similarity=0.394 Sum_probs=79.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|+ .|+|..+ +|+.|.|.+++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF-RGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE-TTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE-CCeEEEEEECC
Confidence 368999999999999999999999999999999999889999999999999999999999 7999999 89999999998
Q ss_pred cCCCCCCC
Q 027505 192 PFNCQHFG 199 (222)
Q Consensus 192 ~~~~~~~~ 199 (222)
+.......
T Consensus 114 ~~~~~~~~ 121 (124)
T 2jwn_A 114 TNMPGISS 121 (124)
T ss_dssp CCCSSCCC
T ss_pred CCCCCCCC
Confidence 86654333
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=1.6e-21 Score=139.52 Aligned_cols=83 Identities=27% Similarity=0.445 Sum_probs=78.7
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCC-c
Q 027505 111 EAARLYVGNLPY------SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADG-I 183 (222)
Q Consensus 111 ~~~~ifV~nLp~------~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~g-r 183 (222)
..++|||+|||+ ++++++|+++|++||.|.+++|++++.||+++|||||+|.+.++|++|++.|||..+ +| |
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL-DLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS-SSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc-CCCe
Confidence 357899999999 999999999999999999999999998999999999999999999999999999999 88 9
Q ss_pred EEEEEEeccCC
Q 027505 184 CIAIVLIEPFN 194 (222)
Q Consensus 184 ~i~v~~a~~~~ 194 (222)
.|.|.++.|+.
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999998753
No 59
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=134.36 Aligned_cols=85 Identities=25% Similarity=0.362 Sum_probs=79.6
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeE--------EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Q 027505 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177 (222)
Q Consensus 106 ~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~--------~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~ 177 (222)
.......++|||+|||+++++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|++|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344557789999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred eecCCcEEEEEEec
Q 027505 178 VSADGICIAIVLIE 191 (222)
Q Consensus 178 ~~~~gr~i~v~~a~ 191 (222)
.+ +|+.|+|.+|+
T Consensus 87 ~~-~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EF-SGNPIKVSFAT 99 (99)
T ss_dssp BS-SSSBCEEEECC
T ss_pred Ee-CCcEEEEEecC
Confidence 99 89999999874
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=134.06 Aligned_cols=86 Identities=28% Similarity=0.450 Sum_probs=79.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCC---CCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV---TDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~---tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
.+.++|||+|||+++++++|+++|++||.|..+.+++++. +++++|||||+|.+.++|++|++.|||..+ +|++|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV-DGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE-TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee-CCeEEE
Confidence 3567999999999999999999999999999999999876 568999999999999999999999999999 899999
Q ss_pred EEEeccCCCC
Q 027505 187 IVLIEPFNCQ 196 (222)
Q Consensus 187 v~~a~~~~~~ 196 (222)
|.+++++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999886653
No 61
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=141.03 Aligned_cols=88 Identities=28% Similarity=0.400 Sum_probs=82.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|.++.|++++.+|+++|||||+|.+.++|++|++.|||..+ +|+.|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI-LNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC-SSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CCeEEEE
Confidence 344678999999999999999999999999999999999998999999999999999999999999999999 8999999
Q ss_pred EEeccCCCC
Q 027505 188 VLIEPFNCQ 196 (222)
Q Consensus 188 ~~a~~~~~~ 196 (222)
.+++++..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999886643
No 62
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=132.66 Aligned_cols=83 Identities=37% Similarity=0.471 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|||..+ +|++|.|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL-DGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE-TTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-CCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999 89999999
Q ss_pred Eecc
Q 027505 189 LIEP 192 (222)
Q Consensus 189 ~a~~ 192 (222)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=138.03 Aligned_cols=85 Identities=27% Similarity=0.497 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.|+.++ +|+++|||||+|.+.++|++|++.|||..+ +|+.|.|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~-~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL-HGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC-SSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE-CCEEEEEE
Confidence 3456899999999999999999999999999999999998 999999999999999999999999999999 89999999
Q ss_pred EeccCCC
Q 027505 189 LIEPFNC 195 (222)
Q Consensus 189 ~a~~~~~ 195 (222)
++++...
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9987553
No 64
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=135.25 Aligned_cols=86 Identities=17% Similarity=0.381 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCC-CCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~t-g~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
....++|||+|||+++++++|+++|++|| |..+.|++++.+ |+++|||||+|.+.++|++|+ .|++..+ +|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL-GNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE-TTEECEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe-CCcEEEE
Confidence 34568999999999999999999999999 999999999877 999999999999999999999 8999999 9999999
Q ss_pred EEeccCCCCC
Q 027505 188 VLIEPFNCQH 197 (222)
Q Consensus 188 ~~a~~~~~~~ 197 (222)
.+++++....
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9999977544
No 65
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=132.26 Aligned_cols=83 Identities=25% Similarity=0.435 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..+ +|++|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL-FGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE-TTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee-CCcEEEE
Confidence 344678999999999999999999999999999999999998899999999999999999999999999999 8999999
Q ss_pred EEec
Q 027505 188 VLIE 191 (222)
Q Consensus 188 ~~a~ 191 (222)
.+|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 66
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=137.11 Aligned_cols=89 Identities=26% Similarity=0.356 Sum_probs=82.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCee--------EEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA--------SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~--------~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
.....++|||+|||+++++++|+++|++||.|. .++|+.++.+|+++|||||+|.+.++|++|++.|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred cCCcEEEEEEeccCCCCC
Q 027505 180 ADGICIAIVLIEPFNCQH 197 (222)
Q Consensus 180 ~~gr~i~v~~a~~~~~~~ 197 (222)
+|+.|.|.+++++....
T Consensus 91 -~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 -QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp -TTEECEEECSSCCCCST
T ss_pred -CCCEEEEEECCCCCCCC
Confidence 89999999999876543
No 67
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=136.92 Aligned_cols=85 Identities=31% Similarity=0.515 Sum_probs=80.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|++.|+|..+ +|++|+|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i-~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL-AGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS-SSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE-CCEEEEEE
Confidence 44568999999999999999999999999999999999988999999999999999999999999999999 89999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998864
No 68
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=133.81 Aligned_cols=86 Identities=29% Similarity=0.474 Sum_probs=80.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.|+.+ +|+++|||||+|.+.++|++|++.|||..+ +|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV-ATKPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS-SSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe-CCcEEEEE
Confidence 446789999999999999999999999999999999998 899999999999999999999999999999 89999999
Q ss_pred EeccCCCCC
Q 027505 189 LIEPFNCQH 197 (222)
Q Consensus 189 ~a~~~~~~~ 197 (222)
+++++..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 999876543
No 69
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=133.65 Aligned_cols=86 Identities=23% Similarity=0.369 Sum_probs=80.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCee-EEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE---
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA-SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC--- 184 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~-~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~--- 184 (222)
....++|||+|||+++++++|+++|++||.|. .+++++++.+|+++|||||+|.+.++|++|++.|||..+ +|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL-PGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE-SSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc-CCCCcce
Confidence 34678999999999999999999999999999 999999998999999999999999999999999999999 8999
Q ss_pred -EEEEEeccCCC
Q 027505 185 -IAIVLIEPFNC 195 (222)
Q Consensus 185 -i~v~~a~~~~~ 195 (222)
|+|.++++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999988543
No 70
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=132.10 Aligned_cols=84 Identities=21% Similarity=0.230 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~----~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
...++|||+|||+++++++|+ ++|++||.|.+++|+.++.+ +|||||+|.+.++|++|++.|||..+ +||+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~-~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI-GSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE-TTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE-CCeEE
Confidence 356799999999999999999 99999999999999998744 89999999999999999999999999 89999
Q ss_pred EEEEeccCCCCC
Q 027505 186 AIVLIEPFNCQH 197 (222)
Q Consensus 186 ~v~~a~~~~~~~ 197 (222)
+|.++++.....
T Consensus 83 ~V~~a~~~~~~~ 94 (96)
T 2dgx_A 83 LVSLATGASGPS 94 (96)
T ss_dssp EEEECCCSSCCC
T ss_pred EEEEcCCCCCCC
Confidence 999998866543
No 71
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=136.61 Aligned_cols=85 Identities=32% Similarity=0.478 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|..++|++++.+++++|||||+|.+.++|++|++.+++ .+ +|++|.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~-~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II-DGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE-TTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC-CCEEEEE
Confidence 344678999999999999999999999999999999999998999999999999999999999999998 77 8999999
Q ss_pred EEeccCC
Q 027505 188 VLIEPFN 194 (222)
Q Consensus 188 ~~a~~~~ 194 (222)
.++.+..
T Consensus 91 ~~a~~~~ 97 (116)
T 2cqd_A 91 NLAYLGA 97 (116)
T ss_dssp EESTTTC
T ss_pred EEcccCC
Confidence 9997644
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=130.38 Aligned_cols=83 Identities=22% Similarity=0.441 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCC-cccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR-SRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~-~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
..++|||+|||+++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|++|++.|||..+ +|+.|.|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI-DGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE-CCeEEEEEE
Confidence 467999999999999999999999999999999999987666 999999999999999999999999999 899999999
Q ss_pred eccCC
Q 027505 190 IEPFN 194 (222)
Q Consensus 190 a~~~~ 194 (222)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 98754
No 73
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=1.7e-20 Score=139.37 Aligned_cols=89 Identities=22% Similarity=0.233 Sum_probs=82.6
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 106 ~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
+......++|||+|||+++++++|+++|++||.|..+.|+.++.+|+++|||||+|.+.++|++|++.|||..+ +|+.|
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l 94 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL-MGQPI 94 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS-SSSBC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CCeEE
Confidence 34445678999999999999999999999999999999999988999999999999999999999999999999 89999
Q ss_pred EEEEeccCCC
Q 027505 186 AIVLIEPFNC 195 (222)
Q Consensus 186 ~v~~a~~~~~ 195 (222)
.|.++.++..
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999987664
No 74
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=2.3e-20 Score=134.44 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=81.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeec--CCcEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSA--DGICI 185 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~--~gr~i 185 (222)
.....++|||+|||+++++++|+++|++||.|..+.|+.++.+|+++|||||+|.+.++|++|++.||+..++ +|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3446789999999999999999999999999999999999989999999999999999999999999998864 46999
Q ss_pred EEEEeccCCCCC
Q 027505 186 AIVLIEPFNCQH 197 (222)
Q Consensus 186 ~v~~a~~~~~~~ 197 (222)
.|.+++++....
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999998866543
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=2.8e-20 Score=130.53 Aligned_cols=85 Identities=31% Similarity=0.454 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.++++ +|+++|||||+|.+.++|++|++.|+|..+ +|+.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~-~g~~l~v~ 81 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL-SGREIDVR 81 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB-TTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE-CCcEEEEE
Confidence 346789999999999999999999999999999999985 799999999999999999999999999999 89999999
Q ss_pred EeccCCCC
Q 027505 189 LIEPFNCQ 196 (222)
Q Consensus 189 ~a~~~~~~ 196 (222)
++++....
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99986653
No 76
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=3e-20 Score=129.52 Aligned_cols=81 Identities=25% Similarity=0.493 Sum_probs=77.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|+ .|+|..+ +|+.|.|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~-~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF-RGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE-TTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE-CCcEEEEEEcc
Confidence 468999999999999999999999999999999999889999999999999999999999 8999999 99999999998
Q ss_pred cCC
Q 027505 192 PFN 194 (222)
Q Consensus 192 ~~~ 194 (222)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 743
No 77
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=4.2e-20 Score=128.38 Aligned_cols=80 Identities=26% Similarity=0.477 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|++ +++..+ +|+.|.|.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~-~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL-DGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE-TTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE-CCEEEEEE
Confidence 4467899999999999999999999999999999999999899999999999999999999997 588888 99999998
Q ss_pred Ee
Q 027505 189 LI 190 (222)
Q Consensus 189 ~a 190 (222)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 78
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=143.85 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccC--CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G--~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
..++|||+|||+++++++|+++|++|| .|.+++|++|+.+|+++|||||+|.+.++|++|++.|||..+ +||.|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~-~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL-NGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE-TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE-CCeEeEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999 99999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
++.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 998744
No 79
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=1.5e-20 Score=140.73 Aligned_cols=88 Identities=36% Similarity=0.437 Sum_probs=81.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
......++|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|++.|+|..+ +|++|.
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i-~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL-DGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS-SSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE-CCEEEE
Confidence 3345678999999999999999999999999999999999998999999999999999999999999999999 899999
Q ss_pred EEEeccCCC
Q 027505 187 IVLIEPFNC 195 (222)
Q Consensus 187 v~~a~~~~~ 195 (222)
|.+++++.+
T Consensus 120 V~~a~~~~p 128 (129)
T 2kxn_B 120 VDFSITKRP 128 (129)
T ss_dssp ESCCSSSSC
T ss_pred EEEecCCCC
Confidence 999988653
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=134.44 Aligned_cols=88 Identities=31% Similarity=0.454 Sum_probs=81.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|..+.|++++.+++++|||||+|.+.++|++|++. ++..+ +|+.|.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~-~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL-DGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE-TTEEEBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE-CCEEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999998 99998 8999999
Q ss_pred EEeccCCCCC
Q 027505 188 VLIEPFNCQH 197 (222)
Q Consensus 188 ~~a~~~~~~~ 197 (222)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9999877544
No 81
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=7.8e-20 Score=140.74 Aligned_cols=86 Identities=27% Similarity=0.421 Sum_probs=81.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.|++..| +|+.|.|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL-DDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE-TTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE-CCeEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999 89999999
Q ss_pred EeccCCC
Q 027505 189 LIEPFNC 195 (222)
Q Consensus 189 ~a~~~~~ 195 (222)
++++...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987554
No 82
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=133.29 Aligned_cols=85 Identities=26% Similarity=0.393 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHc-cCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCe-ecCCcEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV-SADGICIA 186 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~-~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~-~~~gr~i~ 186 (222)
....++|||+|||+++++++|+++|++ ||.|..+.|+.++ +|+++|||||+|.+.++|++|++.|++.. + +|++|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL-GSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS-SSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc-CCEeEE
Confidence 446789999999999999999999999 9999999999998 99999999999999999999999999999 8 899999
Q ss_pred EEEeccCCC
Q 027505 187 IVLIEPFNC 195 (222)
Q Consensus 187 v~~a~~~~~ 195 (222)
|.++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999987654
No 83
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=129.89 Aligned_cols=86 Identities=20% Similarity=0.332 Sum_probs=78.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|..|.|++++ +.++|||||+|.+.++|++|++.|++..+ +|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V 87 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKI-LGKEVKV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEE-TTEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCc-CCCeEEE
Confidence 34567899999999999999999999999999999999985 34799999999999999999999999999 8999999
Q ss_pred EEeccCCCC
Q 027505 188 VLIEPFNCQ 196 (222)
Q Consensus 188 ~~a~~~~~~ 196 (222)
.++++...+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999986643
No 84
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.83 E-value=2.5e-20 Score=144.66 Aligned_cols=104 Identities=21% Similarity=0.304 Sum_probs=89.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCC--CcccEEEEEECCHHHHHHHHHHhCCCeecC--CcEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD--RSRGFGFVTMGSVEEAKEAIRLFDGSVSAD--GICIA 186 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg--~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~--gr~i~ 186 (222)
+.++|||+|||+++++++|+++|++||.|.++++++++.+| +++|||||+|.+.++|++|++.|+|..+.+ ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45789999999999999999999999999999999998776 899999999999999999999999988733 46777
Q ss_pred EEEeccCCCCCCCCCceeEEecCCcCcccc
Q 027505 187 IVLIEPFNCQHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 187 v~~a~~~~~~~~~~~r~~l~vgnl~~~v~~ 216 (222)
+.++.+.... ......|||+|||++++.
T Consensus 82 ~~~~~~~~~~--~~~~~~l~v~nl~~~~t~ 109 (175)
T 3nmr_A 82 MKPADSEKNN--AVEDRKLFIGMISKKCTE 109 (175)
T ss_dssp EEECGGGCCS--CGGGSEEEEESCCTTCCH
T ss_pred Eccccccccc--cCCCCeEEEcCCCCcCCH
Confidence 7777665432 335678999999998764
No 85
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=129.54 Aligned_cols=88 Identities=26% Similarity=0.493 Sum_probs=79.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
......++|||+|||+++++++|+++|++||.|..+.|+.++ +.++|||||+|.+.++|++|++.|++..+ +|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV-EGRKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEE-TTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEE-CCEEEE
Confidence 344567899999999999999999999999999999999986 34899999999999999999999999999 999999
Q ss_pred EEEeccCCCCC
Q 027505 187 IVLIEPFNCQH 197 (222)
Q Consensus 187 v~~a~~~~~~~ 197 (222)
|.+++++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99999876543
No 86
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.8e-20 Score=132.17 Aligned_cols=88 Identities=23% Similarity=0.373 Sum_probs=78.5
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
......++|||+|||+++++++|+++|++||.|..+.|+. +++++|||||+|.+.++|++|++.||+..+ +|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDY-DGYRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEE-TTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEE-CCeEEE
Confidence 3344678999999999999999999999999999999965 456899999999999999999999999999 899999
Q ss_pred EEEeccCCCCCC
Q 027505 187 IVLIEPFNCQHF 198 (222)
Q Consensus 187 v~~a~~~~~~~~ 198 (222)
|.++++......
T Consensus 93 V~~a~~~~~~~~ 104 (109)
T 1x4a_A 93 VEFPRSGRGTGS 104 (109)
T ss_dssp EECCCCCCCCCC
T ss_pred EEEcccCCCCCC
Confidence 999998765443
No 87
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=7.9e-21 Score=142.40 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeE--EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCC----eecCC
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS----VSADG 182 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~--~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~----~~~~g 182 (222)
....++|||+|||+++++++|+++|++||.|.. |+|++|+.+|++||||||+|.+. +|.+|+..|||. .+ +|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~-~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI-DG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG-GG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC-CC
Confidence 345679999999999999999999999999976 99999999999999999999999 999999999999 88 89
Q ss_pred cEEEEEEeccCCC
Q 027505 183 ICIAIVLIEPFNC 195 (222)
Q Consensus 183 r~i~v~~a~~~~~ 195 (222)
|.|.|.++++...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999998654
No 88
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=4.8e-20 Score=133.94 Aligned_cols=86 Identities=27% Similarity=0.421 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|++.+ +..+ +|+.|.|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l-~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL-DSKTIDPK 99 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE-TTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC-CCEEEEEE
Confidence 345679999999999999999999999999999999999989999999999999999999999975 5777 99999999
Q ss_pred EeccCCCC
Q 027505 189 LIEPFNCQ 196 (222)
Q Consensus 189 ~a~~~~~~ 196 (222)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99986643
No 89
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=8.9e-20 Score=131.57 Aligned_cols=83 Identities=31% Similarity=0.520 Sum_probs=78.3
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
......++|||+|||+.+++++|+++|++||.|..+.|++++ +|+++|||||+|.+.++|++|++.|+|..+ +|+.|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~ 101 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL-DGRPMN 101 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe-CCcEEE
Confidence 344567899999999999999999999999999999999998 999999999999999999999999999999 899999
Q ss_pred EEEec
Q 027505 187 IVLIE 191 (222)
Q Consensus 187 v~~a~ 191 (222)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 90
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=5.9e-20 Score=142.89 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=81.1
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
......++|||+|||+.+++++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|++||..|||..| +|+.|.
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~ 145 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-MGQTIQ 145 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE-CCEEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999999999999 899999
Q ss_pred EEEeccCCCC
Q 027505 187 IVLIEPFNCQ 196 (222)
Q Consensus 187 v~~a~~~~~~ 196 (222)
|.|+.++...
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999886643
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=2.4e-20 Score=137.01 Aligned_cols=82 Identities=29% Similarity=0.464 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++.|||..+ +|++|+|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV-GTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE-TTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE-CCEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999 89999999
Q ss_pred Eec
Q 027505 189 LIE 191 (222)
Q Consensus 189 ~a~ 191 (222)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 875
No 92
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=5.9e-20 Score=129.63 Aligned_cols=82 Identities=28% Similarity=0.420 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+.+++++|+++|++||.|..+.|+.++ +|+++|||||+|.+.++|++|++.|||..+ +|++|.|.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRL-YGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEE-TTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEE-CCCEEEEE
Confidence 3456799999999999999999999999999999999998 599999999999999999999999999999 89999999
Q ss_pred Eecc
Q 027505 189 LIEP 192 (222)
Q Consensus 189 ~a~~ 192 (222)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 93
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.8e-20 Score=134.80 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=80.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH---HHHHccCCeeEEEEeecCCCC---CcccEEEEEECCHHHHHHHHHHhCCCeecCC
Q 027505 109 SDEAARLYVGNLPYSMTSSSLA---EVFAEAGTVASAEIVYDRVTD---RSRGFGFVTMGSVEEAKEAIRLFDGSVSADG 182 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~---~~F~~~G~i~~~~l~~d~~tg---~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~g 182 (222)
....++|||+|||+++++++|+ ++|++||.|..+.|+.+..++ +++|||||+|.+.++|++|++.|||..+ +|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~-~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV-DG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE-TT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE-CC
Confidence 3456799999999999999999 999999999999999987644 5669999999999999999999999999 89
Q ss_pred cEEEEEEeccCCCCCCC
Q 027505 183 ICIAIVLIEPFNCQHFG 199 (222)
Q Consensus 183 r~i~v~~a~~~~~~~~~ 199 (222)
++|+|.+|.++.+...+
T Consensus 91 r~l~V~~a~~k~~~~~~ 107 (111)
T 2cpi_A 91 RTLKASLGTTKYCSYSG 107 (111)
T ss_dssp EEEEEESCCCCSCSSTT
T ss_pred EEEEEEecccccccccC
Confidence 99999999998765443
No 94
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.4e-20 Score=141.95 Aligned_cols=86 Identities=31% Similarity=0.457 Sum_probs=80.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.|+.++.+++++|||||+|.+.++|++|++.|+|..+ +|++|.|.
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i-~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL-DGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS-SSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE-CCEEEEEE
Confidence 33567899999999999999999999999999999999988999999999999999999999999999999 89999999
Q ss_pred EeccCCC
Q 027505 189 LIEPFNC 195 (222)
Q Consensus 189 ~a~~~~~ 195 (222)
++++...
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9988654
No 95
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-20 Score=134.24 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+++++++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|++|+. +++..+ +|+.|.|.++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~-~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY-KETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC-TTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE-CCEEEEEEEc
Confidence 457899999999999999999999999999999999985 9999999999999999999999 899999 9999999998
Q ss_pred cc
Q 027505 191 EP 192 (222)
Q Consensus 191 ~~ 192 (222)
.+
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 66
No 96
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=3.4e-20 Score=165.00 Aligned_cols=86 Identities=22% Similarity=0.394 Sum_probs=80.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..| +|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i-~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI-DGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE-CCEEEEEE
Confidence 34467999999999999999999999999999999999988999999999999999999999999999999 89999999
Q ss_pred EeccCCC
Q 027505 189 LIEPFNC 195 (222)
Q Consensus 189 ~a~~~~~ 195 (222)
++.+...
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987553
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-20 Score=135.00 Aligned_cols=82 Identities=32% Similarity=0.577 Sum_probs=78.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|+|..+ +|+.|.|.++.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF-SGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC-SSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CCcEEEEEeCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999 89999999998
Q ss_pred cCC
Q 027505 192 PFN 194 (222)
Q Consensus 192 ~~~ 194 (222)
++.
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 865
No 98
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=131.21 Aligned_cols=84 Identities=32% Similarity=0.444 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|.+||.|..+.|+.++ +|+++|||||+|.+.++|++|++.||+..+ +|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL-FDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe-CCCEEEEE
Confidence 3457899999999999999999999999999999999998 799999999999999999999999999999 89999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
++++..
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 997644
No 99
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=126.68 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++| .|..++|+++ .+|+++|||||+|.+.++|++|++ |||..+ +||.|.|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~-~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM-GGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE-TTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee-CCcEEEEE
Confidence 3467899999999999999999999999 9999999999 599999999999999999999999 999999 99999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
++.+++
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998864
No 100
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-20 Score=131.57 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+ +|++|+|.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI-GSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE-TTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee-CCeEEEEEE
Confidence 3567899999999999999999999999999888888888999999999999999999999999999999 899999999
Q ss_pred eccCC
Q 027505 190 IEPFN 194 (222)
Q Consensus 190 a~~~~ 194 (222)
+.+..
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 97643
No 101
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.8e-20 Score=134.22 Aligned_cols=84 Identities=26% Similarity=0.422 Sum_probs=78.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+++++++|+++|.+||.|..+.|+.++.+|+++|||||+|.+.++|++|++. ++..+ +|+.|.|.++.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~-~g~~l~V~~a~ 104 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI-DGRVVEPKRAV 104 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE-TTEEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE-CCEEEEEEECC
Confidence 46899999999999999999999999999999999988999999999999999999999997 99998 99999999999
Q ss_pred cCCCCC
Q 027505 192 PFNCQH 197 (222)
Q Consensus 192 ~~~~~~ 197 (222)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 877544
No 102
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-19 Score=128.62 Aligned_cols=85 Identities=27% Similarity=0.370 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|..+.|+.++.+|+++|||||+|.+.++|++|++ ++..+ +|+.|.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~-~g~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI-DGRWCDC 87 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE-TTEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee-CCeEEEE
Confidence 34456889999999999999999999999999999999998899999999999999999999999 46677 9999999
Q ss_pred EEeccCCC
Q 027505 188 VLIEPFNC 195 (222)
Q Consensus 188 ~~a~~~~~ 195 (222)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99988664
No 103
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=2.2e-20 Score=126.29 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 114 ~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++ |++..+ +|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~-~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI-NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS-SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE-CCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 999999 8999999875
No 104
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=134.08 Aligned_cols=85 Identities=18% Similarity=0.380 Sum_probs=75.7
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecC-CCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-VTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~-~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
......++|||+|||+++++++|+++|++|| |.+++|++++ .+|+++|||||+|.+.++|++|+ .|+|..+ +|+.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~-~g~~l 90 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL-GNRRI 90 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB-TTBCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE-CCeEE
Confidence 3345678999999999999999999999999 9999999998 58999999999999999999999 7999999 99999
Q ss_pred EEEEeccCC
Q 027505 186 AIVLIEPFN 194 (222)
Q Consensus 186 ~v~~a~~~~ 194 (222)
.|.++++++
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998864
No 105
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.8e-20 Score=131.47 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC--CeecCCcEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG--SVSADGICIA 186 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g--~~~~~gr~i~ 186 (222)
....++|||+|||+++++++|+++|++||.|.+++|+++ ||||||+|.+.++|++|++.|++ ..+ +||+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l-~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL-RGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE-TTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE-CCEEEE
Confidence 345789999999999999999999999999999999875 69999999999999999998864 677 899999
Q ss_pred EEEeccCCCCC
Q 027505 187 IVLIEPFNCQH 197 (222)
Q Consensus 187 v~~a~~~~~~~ 197 (222)
|.+|+++....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998876543
No 106
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.81 E-value=1.4e-19 Score=145.66 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=71.1
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 111 EAARLYVGNLP-YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 111 ~~~~ifV~nLp-~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
..++|||+||| +.+++++|+++|++||.|.++++++++ +|||||+|.+.++|++|++.|||..+ .|+.|.|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~-~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM-FGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE-CCceEEEEE
Confidence 56799999999 899999999999999999999998753 79999999999999999999999999 899999999
Q ss_pred ecc
Q 027505 190 IEP 192 (222)
Q Consensus 190 a~~ 192 (222)
++.
T Consensus 77 s~~ 79 (205)
T 3tyt_A 77 SKQ 79 (205)
T ss_dssp CSC
T ss_pred ccC
Confidence 864
No 107
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.81 E-value=5.6e-20 Score=147.59 Aligned_cols=104 Identities=21% Similarity=0.378 Sum_probs=89.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|++.|++..+ +|+.|.|.++.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~-~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML-GGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC-C-CCCEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee-CCeeEEEecCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999 89999999876
Q ss_pred cCCCCC--------CCCCceeEEecCCcCcccc
Q 027505 192 PFNCQH--------FGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 192 ~~~~~~--------~~~~r~~l~vgnl~~~v~~ 216 (222)
+..... .......|||+||+++++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~ 139 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSD 139 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCH
Confidence 643211 1234578999999998864
No 108
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-20 Score=136.12 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=77.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+++++++|+++|++||.|..+.|+.++.+|+++|||||+|.+.++|++|+ .|||..+ +|+.|.|.+++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL-LGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE-TTEEEEEEEHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe-CCeEEEEEecC
Confidence 468999999999999999999999999999999999988999999999999999999999 8999999 89999999998
Q ss_pred cCC
Q 027505 192 PFN 194 (222)
Q Consensus 192 ~~~ 194 (222)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 754
No 109
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=3.1e-19 Score=132.25 Aligned_cols=86 Identities=30% Similarity=0.457 Sum_probs=80.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+.+++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|++|++.|+|..+ +|+.|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL-DGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES-SSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE-CCcEEEE
Confidence 34567899999999999999999999999999999999998 999999999999999999999999999999 8999999
Q ss_pred EEeccCCC
Q 027505 188 VLIEPFNC 195 (222)
Q Consensus 188 ~~a~~~~~ 195 (222)
.+|.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99988554
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=131.58 Aligned_cols=85 Identities=25% Similarity=0.239 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCC-eeEEEEe-ecCCCCCcccEEEEEECCHHHHHHHHHHhC--CCeecCCcEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIV-YDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSVSADGICI 185 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~-i~~~~l~-~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~--g~~~~~gr~i 185 (222)
...++|||+|||+++++++|+++|.+||. |..+.++ .++.+|+++|||||+|.+.++|++|++.|+ +..+ +|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~-~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL-WGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB-TTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee-cCCeE
Confidence 35679999999999999999999999998 9999998 788889999999999999999999999996 5787 89999
Q ss_pred EEEEeccCCC
Q 027505 186 AIVLIEPFNC 195 (222)
Q Consensus 186 ~v~~a~~~~~ 195 (222)
.|.+++++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999988654
No 111
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=4.8e-20 Score=130.09 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.||+..+ +||+|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI-GSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE-CCcEEEEEec
Confidence 457999999999999999999999999999999999888999999999999999999999999999999 8999999987
Q ss_pred cc
Q 027505 191 EP 192 (222)
Q Consensus 191 ~~ 192 (222)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 112
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.81 E-value=9.5e-20 Score=131.37 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCC------CHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecC
Q 027505 108 ASDEAARLYVGNLPYSM------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSAD 181 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~------t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~ 181 (222)
.....++|||+|||+.+ ++++|+++|++||.|..+.|++ .+|+++|||||+|.+.++|++|++.|||..+ +
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL-D 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC-S
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCccc-C
Confidence 33457899999999999 7899999999999999999983 4899999999999999999999999999999 8
Q ss_pred Cc-EEEEEEeccCC
Q 027505 182 GI-CIAIVLIEPFN 194 (222)
Q Consensus 182 gr-~i~v~~a~~~~ 194 (222)
|+ +|.|.++.+..
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 98 99999997643
No 113
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=130.67 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.+ .++|++++ +|+++|||||+|.+.++|++|++ +|+..+ +||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~-~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANM-QHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCS-SSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeE-CCcEEEEE
Confidence 3456899999999999999999999999954 99999998 99999999999999999999996 799888 99999999
Q ss_pred EeccCCC
Q 027505 189 LIEPFNC 195 (222)
Q Consensus 189 ~a~~~~~ 195 (222)
++.+...
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 9987554
No 114
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=129.66 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeE-EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~-~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
....++|||+|||+++++++|+++|++||.|.. +.|+++ .+|+++|||||+|.+.++|++|++. ++..+ +||.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~-~gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI-GHRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS-SSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh-CCcEEEE
Confidence 345789999999999999999999999999987 889988 5999999999999999999999996 99888 9999999
Q ss_pred EEeccCCCCC
Q 027505 188 VLIEPFNCQH 197 (222)
Q Consensus 188 ~~a~~~~~~~ 197 (222)
.++.++....
T Consensus 89 ~~~~~~~~~~ 98 (104)
T 1wg5_A 89 FKSSRAEVRT 98 (104)
T ss_dssp EEECTTTSCC
T ss_pred EECCHHHHHH
Confidence 9998765433
No 115
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.80 E-value=2e-20 Score=144.36 Aligned_cols=100 Identities=30% Similarity=0.481 Sum_probs=88.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+.++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|++|++. +..+ +|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~-~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL-DGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE-TTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc-CCeEcccccc
Confidence 357899999999999999999999999999999999988999999999999999999999994 5677 8999999998
Q ss_pred ccCCCCCCCCCceeEEecCCcCcccc
Q 027505 191 EPFNCQHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 191 ~~~~~~~~~~~r~~l~vgnl~~~v~~ 216 (222)
.++... .....|||+|||++++.
T Consensus 79 ~~~~~~---~~~~~l~V~nlp~~~t~ 101 (167)
T 2cjk_A 79 IPRDEQ---DKTGKIFVGGIGPDVRP 101 (167)
T ss_dssp CCHHHH---HHCEEEEEEEECTTCCH
T ss_pred cchhhc---cCCCeEEECCCCCCCCH
Confidence 775432 23568999999998864
No 116
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=1.6e-20 Score=131.31 Aligned_cols=81 Identities=37% Similarity=0.607 Sum_probs=73.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.+ |.+|+..|||..+ +|+.|.|.+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~-~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF-MGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC-SSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE-CCeEEEEEEcCC
Confidence 47999999999999999999999999999999999988999999999999999 9999999999999 899999999988
Q ss_pred CCC
Q 027505 193 FNC 195 (222)
Q Consensus 193 ~~~ 195 (222)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 117
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=131.40 Aligned_cols=85 Identities=27% Similarity=0.510 Sum_probs=78.0
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
......++|||+|||+++++++|+++|++||.|..+.+++++ ++++|||||+|.+.++|++|++.|+|..+ +|+.|.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV-EGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE-TTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE-CCEEEE
Confidence 344567899999999999999999999999999999999985 45899999999999999999999999999 899999
Q ss_pred EEEeccCC
Q 027505 187 IVLIEPFN 194 (222)
Q Consensus 187 v~~a~~~~ 194 (222)
|.+++++.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99998853
No 118
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=127.64 Aligned_cols=88 Identities=33% Similarity=0.420 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++|+ .+.++.++.+++++|||||+|.+.++|++|++.||+..+ +|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE-TTEECEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE-CCeEEEE
Confidence 345678999999999999999999999773 678888888999999999999999999999999999999 8999999
Q ss_pred EEeccCCCCCCC
Q 027505 188 VLIEPFNCQHFG 199 (222)
Q Consensus 188 ~~a~~~~~~~~~ 199 (222)
.+++++.....+
T Consensus 87 ~~a~~~~~~~~~ 98 (102)
T 2fc8_A 87 DWAKPKGEGGSG 98 (102)
T ss_dssp EECCCCCSSSCS
T ss_pred EEecCCCCCCCC
Confidence 999997765443
No 119
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=127.76 Aligned_cols=85 Identities=31% Similarity=0.477 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.||+..+ +|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI-EGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE-TTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe-CCeEEEE
Confidence 34467899999999999999999999999987 56666 4899999999999999999999999999999 8999999
Q ss_pred EEeccCCCCC
Q 027505 188 VLIEPFNCQH 197 (222)
Q Consensus 188 ~~a~~~~~~~ 197 (222)
.+++++....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2fc9_A 86 ELQGPRGSPN 95 (101)
T ss_dssp EECSSCCCCC
T ss_pred EEcCCCCCCC
Confidence 9999876543
No 120
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-20 Score=125.18 Aligned_cols=76 Identities=28% Similarity=0.455 Sum_probs=72.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.++ ..+ +|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~-~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL-DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC-SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc-CCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999988 777 8999999987
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-21 Score=141.45 Aligned_cols=91 Identities=25% Similarity=0.350 Sum_probs=83.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeE--------EEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecC
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSAD 181 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~--------~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~ 181 (222)
.+.++|||+|||+++++++|+++|++||.|.. +.++.++.+|+++|||||+|.+.++|++|++.|||..+ +
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-S 83 (116)
Confidence 35678999999999999999999999999998 99999988999999999999999999999999999999 8
Q ss_pred CcEEEEEEeccCCCCCCCCC
Q 027505 182 GICIAIVLIEPFNCQHFGNG 201 (222)
Q Consensus 182 gr~i~v~~a~~~~~~~~~~~ 201 (222)
|++|.|.+++++.....++|
T Consensus 84 g~~l~V~~a~~~~~~~~ggg 103 (116)
T 2lcw_A 84 GNPIKVSFATRRADFNRGGG 103 (116)
Confidence 99999999998776544443
No 122
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-20 Score=128.95 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+ +|+.|++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV-QAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC-CEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE-eeEEEeecC
Confidence 3568999999999999999999999999999999999988999999999999999999999999999999 899887665
Q ss_pred e
Q 027505 190 I 190 (222)
Q Consensus 190 a 190 (222)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=134.14 Aligned_cols=81 Identities=30% Similarity=0.411 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+.+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|++.|||..+ +|++|+|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE-TTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE-CCEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999 89999998
Q ss_pred Ee
Q 027505 189 LI 190 (222)
Q Consensus 189 ~a 190 (222)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 124
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=132.87 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC 184 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~----~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~ 184 (222)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++++||||||+|.+.++|.+|++.|||..+ .|++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l-~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF-QGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC-TTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe-CCCE
Confidence 3457899999999999999876 6999999999988753 788999999999999999999999999999 8999
Q ss_pred EEEEEeccCC
Q 027505 185 IAIVLIEPFN 194 (222)
Q Consensus 185 i~v~~a~~~~ 194 (222)
|+|.||+++.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998865
No 125
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4e-19 Score=123.24 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
....-|||+||++.+++++|+++|.+||+|.++.+.. +||||||+|.++++|++|++.||+..+ +||+|+|.+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l-~gr~I~V~~ 77 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL-ANTTIFAES 77 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE-TTEEEEEEC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE-CCcEEEEEE
Confidence 3467899999999999999999999999999999865 589999999999999999999999999 899999999
Q ss_pred ec
Q 027505 190 IE 191 (222)
Q Consensus 190 a~ 191 (222)
|.
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 126
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=123.04 Aligned_cols=81 Identities=25% Similarity=0.438 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|++..+ +|++|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL-HGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC-SSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc-CCcEEEEE
Confidence 3467899999999999999999999999999999987 68999999999999999999999999 89999999
Q ss_pred EeccCCCCCC
Q 027505 189 LIEPFNCQHF 198 (222)
Q Consensus 189 ~a~~~~~~~~ 198 (222)
+++++.....
T Consensus 76 ~a~~~~~~~~ 85 (90)
T 2dnq_A 76 ASKNKSKASS 85 (90)
T ss_dssp CSSCCCCCCS
T ss_pred ECCCCCCCCC
Confidence 9998765443
No 127
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=129.05 Aligned_cols=83 Identities=30% Similarity=0.482 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeec-------CC
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSA-------DG 182 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~-------~g 182 (222)
...++|||+|||+++++++|+++|++||.|..+.|+.++ +|+++|||||+|.+.++|++|++.|||..+. .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356899999999999999999999999999999999998 9999999999999999999999999999982 36
Q ss_pred cEEEEEEeccC
Q 027505 183 ICIAIVLIEPF 193 (222)
Q Consensus 183 r~i~v~~a~~~ 193 (222)
++|.|.++.|.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 77999999874
No 128
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=132.11 Aligned_cols=83 Identities=13% Similarity=0.235 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCe-eEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i-~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
....++|||+|||+++++++|+++|++||.| ..|.|++|+ +|+++|||||+|.+.++|++|++. ++..+ +||.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~-~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL-NGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE-TTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc-CCeEEEE
Confidence 3456899999999999999999999999999 899999998 999999999999999999999996 99998 9999999
Q ss_pred EEeccCC
Q 027505 188 VLIEPFN 194 (222)
Q Consensus 188 ~~a~~~~ 194 (222)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997744
No 129
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.6e-19 Score=136.29 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCC---eeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~---i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
....++|||+|||+++++++|+++|++||. |.+|+|++|+. |+++|||||+|.+.++|++|++ ||+..+ +||.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l-~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM-GHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES-SSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE-CCEEE
Confidence 345689999999999999999999999999 89999999985 9999999999999999999999 999999 99999
Q ss_pred EEEEeccCC
Q 027505 186 AIVLIEPFN 194 (222)
Q Consensus 186 ~v~~a~~~~ 194 (222)
.|.++.++.
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999987643
No 130
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=2.3e-19 Score=132.18 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCC---eeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~---i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
....++|||+|||+++++++|+++|++||. |..++|++++. |+++|||||+|.+.++|++|++ +++..+ +||.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~-~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM-GHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE-TTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE-CCeEE
Confidence 345789999999999999999999999999 89999999985 9999999999999999999999 999998 99999
Q ss_pred EEEEeccCC
Q 027505 186 AIVLIEPFN 194 (222)
Q Consensus 186 ~v~~a~~~~ 194 (222)
.|.++.++.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999996643
No 131
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-20 Score=132.56 Aligned_cols=84 Identities=24% Similarity=0.262 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|.. .++.+..+|+++|||||+|.+.++|++|++ |||..+ +|+.|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~-~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV-FGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB-TTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE-CCcEEEEE
Confidence 345679999999999999999999999999888 667777789999999999999999999999 999999 89999999
Q ss_pred EeccCCC
Q 027505 189 LIEPFNC 195 (222)
Q Consensus 189 ~a~~~~~ 195 (222)
+++++..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9988654
No 132
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.79 E-value=5.1e-20 Score=143.43 Aligned_cols=105 Identities=19% Similarity=0.220 Sum_probs=89.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|.+||.+.. .++.+..+|+++|||||+|.+.++|.+|++ |+|..+ +|++|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~-~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV-FGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEE-TTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEe-CCeEEEE
Confidence 3456789999999999999999999999998766 334444589999999999999999999995 999999 8999999
Q ss_pred EEeccCCCCCCCCCceeEEecCCcCcccc
Q 027505 188 VLIEPFNCQHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 188 ~~a~~~~~~~~~~~r~~l~vgnl~~~v~~ 216 (222)
.++.++... .......|||+|||++++.
T Consensus 86 ~~~~~~~~~-~~~~~~~l~v~nlp~~~t~ 113 (175)
T 1fje_B 86 EKPKGRDSK-KVRAARTLLAKNLSFNITE 113 (175)
T ss_dssp ECCCCSSCS-TTGGGGEEEEESCCSSCCH
T ss_pred ecCCCcccc-ccccCCEEEEeCCCCCCCH
Confidence 999885542 3345679999999998864
No 133
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.6e-20 Score=133.31 Aligned_cols=88 Identities=25% Similarity=0.308 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|++|++.|+|..+ +|+.|.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL-YGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC-SSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe-CCcEEEEE
Confidence 34578999999999999999999999999985433322323789999999999999999999999999999 89999999
Q ss_pred EeccCCCCC
Q 027505 189 LIEPFNCQH 197 (222)
Q Consensus 189 ~a~~~~~~~ 197 (222)
+++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999876543
No 134
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=127.96 Aligned_cols=80 Identities=13% Similarity=0.215 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCC--eecCCcEE
Q 027505 109 SDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS--VSADGICI 185 (222)
Q Consensus 109 ~~~~~~ifV~nLp~-~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~--~~~~gr~i 185 (222)
..+.++|||+|||+ ++++++|+++|++||.|.++.|+++ +|||||+|.+.++|++|++.|++. .+ +||+|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV-FGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE-TTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE-CCcEE
Confidence 34678999999999 9999999999999999999999865 489999999999999999998865 47 89999
Q ss_pred EEEEeccCCC
Q 027505 186 AIVLIEPFNC 195 (222)
Q Consensus 186 ~v~~a~~~~~ 195 (222)
.|.+|++...
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 1x4d_A 85 RVHLSQKYKR 94 (102)
T ss_dssp EEEEECCCTT
T ss_pred EEEECCCCCC
Confidence 9999987543
No 135
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=125.14 Aligned_cols=79 Identities=13% Similarity=0.118 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCe--ecCCcEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV--SADGICIA 186 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~--~~~gr~i~ 186 (222)
..+.++|||+|||+++++++|+++|++||.|.++.+++ .||||||+|.+.++|.+|++.|++.. + +||+|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i-~Gr~i~ 90 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYI-AGHPAF 90 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEE-TTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCcee-CCcEEE
Confidence 44678999999999999999999999999999999875 36999999999999999999999886 5 899999
Q ss_pred EEEeccCC
Q 027505 187 IVLIEPFN 194 (222)
Q Consensus 187 v~~a~~~~ 194 (222)
|.+|+++.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998754
No 136
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=4.1e-19 Score=129.51 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G-~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
...++|||+|||+++++++|+++|++|| .|..+.++. ++++|||||+|.+.++|++|++.|||..+ +||.|+|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l-~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEF-RGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEE-TTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEE
Confidence 3567999999999999999999999999 899998853 35799999999999999999999999999 99999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
+++..+
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 997644
No 137
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.79 E-value=1.4e-18 Score=145.33 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC 184 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~----~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~ 184 (222)
....++|||+|||+++++++|+ ++|++||.|.+|++++ +|+++|||||+|.+.++|++|++.|||..+ .|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF-YDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee-CCcE
Confidence 4467899999999999999977 8999999999999875 788999999999999999999999999999 8999
Q ss_pred EEEEEeccCC
Q 027505 185 IAIVLIEPFN 194 (222)
Q Consensus 185 i~v~~a~~~~ 194 (222)
|+|.++++..
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997644
No 138
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=125.61 Aligned_cols=79 Identities=27% Similarity=0.314 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCC-----c
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADG-----I 183 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~g-----r 183 (222)
....++|||+|||+++++++|+++|++||.|..+.|+.+ |||||+|.+.++|++|++.||+..+ +| +
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~~~~~ 83 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF-RSHEGETA 83 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEE-ECTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCc-cCCcCcce
Confidence 345789999999999999999999999999999999875 8999999999999999999999999 89 9
Q ss_pred EEEEEEeccCCC
Q 027505 184 CIAIVLIEPFNC 195 (222)
Q Consensus 184 ~i~v~~a~~~~~ 195 (222)
.|+|.+++++..
T Consensus 84 ~i~V~~a~~~~~ 95 (108)
T 1x4c_A 84 YIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEESSCCSC
T ss_pred EEEEEeCCCCCC
Confidence 999999998664
No 139
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.6e-19 Score=129.15 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC--CeecCCcEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG--SVSADGICIA 186 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g--~~~~~gr~i~ 186 (222)
..+.++|||+|||+++++++|+++|++||.|.++.|+++ ||||||+|.+.++|++|++.|++ ..+ +|++|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l-~Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL-RGQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB-TTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE-CCeEEE
Confidence 345789999999999999999999999999999999875 79999999999999999998874 567 899999
Q ss_pred EEEeccCCCC
Q 027505 187 IVLIEPFNCQ 196 (222)
Q Consensus 187 v~~a~~~~~~ 196 (222)
|.+|+++...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999887654
No 140
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=124.61 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC--CCeecCCcEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSVSADGICIA 186 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~--g~~~~~gr~i~ 186 (222)
..+.++|||+|||+++++++|+++|++||.|..+.++++ ||||||+|.+.++|++|++.|+ +..+ +||+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~Gr~l~ 84 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL-RNQPIY 84 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE-TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE-CCcEEE
Confidence 345689999999999999999999999999999988764 7999999999999999999774 6678 899999
Q ss_pred EEEeccCCCC
Q 027505 187 IVLIEPFNCQ 196 (222)
Q Consensus 187 v~~a~~~~~~ 196 (222)
|.+++++...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999986654
No 141
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-19 Score=124.68 Aligned_cols=84 Identities=25% Similarity=0.366 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|++|++.|+|..+ +|++|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~-~g~~l~v~ 84 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVR 84 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB-TTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe-CCceEEEE
Confidence 446689999999999999999999999999999999754 69999999999999999999999999 89999999
Q ss_pred EeccCCCCCCC
Q 027505 189 LIEPFNCQHFG 199 (222)
Q Consensus 189 ~a~~~~~~~~~ 199 (222)
+++++.....+
T Consensus 85 ~a~~~~~~~~g 95 (99)
T 2cpj_A 85 FACHSASLTSG 95 (99)
T ss_dssp ESSCCSCCCCC
T ss_pred EcCCCCCCCCC
Confidence 99997754443
No 142
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.78 E-value=1.2e-18 Score=142.06 Aligned_cols=102 Identities=25% Similarity=0.272 Sum_probs=87.5
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 109 SDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 109 ~~~~~~ifV~nLp~-~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
....++|||+|||+ ++++++|+++|++||.|.++++++++ +|||||+|.+.++|++|++.|+|..+ +|+.|.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~-~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL-HGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC-SSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE-CCeEEEE
Confidence 44678999999999 99999999999999999999999875 79999999999999999999999999 8999999
Q ss_pred EEeccCCCCC--------------------------------CCCCceeEEecCCcCcccc
Q 027505 188 VLIEPFNCQH--------------------------------FGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 188 ~~a~~~~~~~--------------------------------~~~~r~~l~vgnl~~~v~~ 216 (222)
.++++..... ......+|||+||+++++.
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~ 165 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 165 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCH
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCH
Confidence 9997642100 0112478999999998764
No 143
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.2e-19 Score=124.47 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|. +.++. ++++|||||+|.+.++|++|++.|||..+ +|++|.|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V 88 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRL-GTDTLRV 88 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCS-SSSCCEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEE-CCcEEEE
Confidence 344578999999999999999999999999997 66664 46899999999999999999999999999 8999999
Q ss_pred EEeccCCC
Q 027505 188 VLIEPFNC 195 (222)
Q Consensus 188 ~~a~~~~~ 195 (222)
.+++++..
T Consensus 89 ~~a~~~~~ 96 (97)
T 2e5j_A 89 ALARQQRD 96 (97)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99988653
No 144
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.4e-19 Score=145.83 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccC--CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G--~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
..++|||+|||+++++++|+++|++|| .|.+|+|++|+.+|++||||||+|.+.++|++||+.||+..| +|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~-~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL-HGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB-TTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE-CCEEeEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999 89999999
Q ss_pred Eecc
Q 027505 189 LIEP 192 (222)
Q Consensus 189 ~a~~ 192 (222)
++++
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9865
No 145
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-19 Score=126.07 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCC--eecCCcEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS--VSADGICIA 186 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~--~~~~gr~i~ 186 (222)
..+.++|||+|||+++++++|+++|++||.|..+.++++ ||||||+|.+.++|.+|++.|++. .+ +|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i-~Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI-AGQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS-SSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE-CCEEEE
Confidence 345689999999999999999999999999999998763 799999999999999999988765 36 899999
Q ss_pred EEEeccCCCCC
Q 027505 187 IVLIEPFNCQH 197 (222)
Q Consensus 187 v~~a~~~~~~~ 197 (222)
|.+++++....
T Consensus 85 V~~a~~~~~~~ 95 (104)
T 1wex_A 85 FNYSTSKRITR 95 (104)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCccccC
Confidence 99998866543
No 146
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.3e-19 Score=122.31 Aligned_cols=75 Identities=25% Similarity=0.351 Sum_probs=71.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 114 ~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
+|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|++ +++..+ +|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~-~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNV-GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCB-TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeE-CCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999999 588888 8999999875
No 147
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=125.00 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|+|..+ +|+.|.|.+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI-EGHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE-CCcEEEEEe
Confidence 45689999999999999999999999999999999875 79999999999999999999999999 899999999
Q ss_pred eccCCCC
Q 027505 190 IEPFNCQ 196 (222)
Q Consensus 190 a~~~~~~ 196 (222)
++++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9986653
No 148
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-19 Score=134.09 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|++|++ ||+..| +||.|.|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~-~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM-GNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS-TTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE-CCcEEEEE
Confidence 3456899999999999999999999999999886666666799999999999999999999999 999999 99999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997743
No 149
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.3e-18 Score=121.69 Aligned_cols=82 Identities=28% Similarity=0.475 Sum_probs=73.5
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHHcc--CCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE
Q 027505 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEA--GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC 184 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~--G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~ 184 (222)
......++|||+|||+.+++++|+++|++| |.|..+.++ +|||||+|.+.++|++|++.|||..+ +|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL-DGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE-TTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe-CCcE
Confidence 334467899999999999999999999999 899988764 67999999999999999999999999 8999
Q ss_pred EEEEEeccCCCCC
Q 027505 185 IAIVLIEPFNCQH 197 (222)
Q Consensus 185 i~v~~a~~~~~~~ 197 (222)
|.|.+++++....
T Consensus 81 l~v~~a~~~~~~~ 93 (99)
T 2cpd_A 81 IEVTLAKPVDKDS 93 (99)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCCCCC
Confidence 9999999876533
No 150
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=120.32 Aligned_cols=83 Identities=30% Similarity=0.416 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+++++++|+++|++||.|..+.++ ++||||+|.+.++|++|++.|||..+ +|+.|.|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEF-QGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEE-TTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCee-CCcEEEE
Confidence 34467899999999999999999999999999999987 34999999999999999999999999 8999999
Q ss_pred EEeccCCCCCCC
Q 027505 188 VLIEPFNCQHFG 199 (222)
Q Consensus 188 ~~a~~~~~~~~~ 199 (222)
.+++++.....+
T Consensus 77 ~~a~~~~~~~~~ 88 (92)
T 2dgt_A 77 QLSTSRLRTASG 88 (92)
T ss_dssp EESSCCCSCCCC
T ss_pred EEccCCCCCCCC
Confidence 999987654443
No 151
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=120.32 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..+ +|++|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEV-KGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEE-TTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEE-CCcEEEEE
Confidence 4467899999999999999999999999999999987 34999999999999999999999999 89999999
Q ss_pred EeccCCCC
Q 027505 189 LIEPFNCQ 196 (222)
Q Consensus 189 ~a~~~~~~ 196 (222)
++++....
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99986543
No 152
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=122.98 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=67.3
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc-E
Q 027505 112 AARLYVGNLPYSM------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI-C 184 (222)
Q Consensus 112 ~~~ifV~nLp~~~------t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr-~ 184 (222)
+++|||+|||+.+ ++++|+++|++||.|.++.++. .+|+++|||||+|.+.++|++|++.|||..+ +|+ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~-~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKL-DKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCC-SSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCccc-CCcee
Confidence 3689999999999 7799999999999999999883 4899999999999999999999999999999 898 7
Q ss_pred EEE
Q 027505 185 IAI 187 (222)
Q Consensus 185 i~v 187 (222)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 765
No 153
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=5.4e-19 Score=125.11 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC 184 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~----~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~ 184 (222)
....++|||+|||+++++++|+ ++|++||.|..+.++. +|+++|||||+|.+.++|++|++.|+|..+ +|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF-YDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE-TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE-CCcE
Confidence 3467899999999999999999 9999999999998873 678899999999999999999999999999 8999
Q ss_pred EEEEEeccCC
Q 027505 185 IAIVLIEPFN 194 (222)
Q Consensus 185 i~v~~a~~~~ 194 (222)
|.|.++++..
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998855
No 154
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.2e-19 Score=128.59 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=73.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
..+|||+|||+++++++|+++|++| .|.+|.|++|+ .|+++|||||+|.+.++|++|+ .+|+..+ +||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~-~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLM-IQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEE-TTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeE-CCeEEEEEECC
Confidence 4689999999999999999999999 89999999998 5999999999999999999999 5999999 99999999887
Q ss_pred cCC
Q 027505 192 PFN 194 (222)
Q Consensus 192 ~~~ 194 (222)
++.
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 643
No 155
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=122.58 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecC--CcEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSAD--GICIA 186 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~--gr~i~ 186 (222)
....++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.||+..+ + |++|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~-~~~g~~l~ 86 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPL-GGPDRRLR 86 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBC-SSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEe-CCCCcEEE
Confidence 345689999999999999999999999999999998753 78999999999999999999999999 7 99999
Q ss_pred EEEeccCCC
Q 027505 187 IVLIEPFNC 195 (222)
Q Consensus 187 v~~a~~~~~ 195 (222)
|.+++++..
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999998653
No 156
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=130.68 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCC---eeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC 184 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~---i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~ 184 (222)
.....++|||+|||+++++++|+++|++||. |..+.|++++. |+++|||||+|.+.++|++|++ +++..+ +||.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~-~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM-GQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS-SSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee-CCeE
Confidence 3456789999999999999999999999988 89999999985 9999999999999999999999 999998 9999
Q ss_pred EEEEEeccCC
Q 027505 185 IAIVLIEPFN 194 (222)
Q Consensus 185 i~v~~a~~~~ 194 (222)
|.|.++.++.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999997744
No 157
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=2.1e-18 Score=125.95 Aligned_cols=82 Identities=20% Similarity=0.404 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+.+++++|+++|++||.|..+.++++ ++++|||||+|.+.++|.+|++.|||..+ +|+.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV-SNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS-SSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEE
Confidence 345789999999999999999999999999999999874 56699999999999999999999999999 89999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
++.+..
T Consensus 81 ~a~~~~ 86 (115)
T 3lqv_A 81 YYNANR 86 (115)
T ss_dssp ECCHHH
T ss_pred EecCCh
Confidence 998754
No 158
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=7e-19 Score=124.37 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+.+++++|+++|++||.|..+ ..+|+++|||||+|.+.++|++|++.|+|..+ +|++|.|.++
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~~a 88 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI-DGRSVSLYYT 88 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE-TTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CCeEEEEEEc
Confidence 46799999999999999999999999988766 23789999999999999999999999999999 8999999999
Q ss_pred ccCCC
Q 027505 191 EPFNC 195 (222)
Q Consensus 191 ~~~~~ 195 (222)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 88654
No 159
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.2e-18 Score=124.40 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+++++++|+++|++||.|.++++. +++|||||+|.+.++|++|+..|||..+ +|+.|+|.++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPF-QGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEE-TTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeE-CCeEEEEEec
Confidence 46899999999999999999999999999999987 3579999999999999999999999999 8999999999
Q ss_pred ccC
Q 027505 191 EPF 193 (222)
Q Consensus 191 ~~~ 193 (222)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 160
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.8e-18 Score=125.36 Aligned_cols=78 Identities=26% Similarity=0.392 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..+ +|+.|.|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~V~ 98 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF-ANQPLEVV 98 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE-TTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEE
Confidence 4467899999999999999999999999999999987 69999999999999999999999999 99999999
Q ss_pred EeccCCC
Q 027505 189 LIEPFNC 195 (222)
Q Consensus 189 ~a~~~~~ 195 (222)
++++...
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9988654
No 161
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=2.9e-18 Score=124.37 Aligned_cols=78 Identities=23% Similarity=0.419 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 111 EAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 111 ~~~~ifV~nLp~~-~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
..++|||+|||++ +++++|+++|++||.|..+.+ ++|||||+|.+.++|++|++.|++..+ +|+.|.|.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL-AGQTLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE-TTEECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE-CCeEEEEEE
Confidence 4579999999999 999999999999999999988 479999999999999999999999999 899999999
Q ss_pred eccCCCCC
Q 027505 190 IEPFNCQH 197 (222)
Q Consensus 190 a~~~~~~~ 197 (222)
+++.....
T Consensus 97 a~~~~~~~ 104 (110)
T 1wf1_A 97 AGEPKPDR 104 (110)
T ss_dssp SCCCCSCC
T ss_pred CCCCCCCC
Confidence 98655433
No 162
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.5e-18 Score=122.87 Aligned_cols=79 Identities=20% Similarity=0.412 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 110 DEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 110 ~~~~~ifV~nLp~-~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
.+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|+|..+ +|++|.|.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~l~V~ 78 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN-FGKKLILE 78 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC-BTTTBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee-CCcEEEEE
Confidence 4578999999999 99999999999999999999984 68999999999999999999999999 89999999
Q ss_pred EeccCCCCC
Q 027505 189 LIEPFNCQH 197 (222)
Q Consensus 189 ~a~~~~~~~ 197 (222)
+++++....
T Consensus 79 ~a~~~~~~~ 87 (96)
T 2kvi_A 79 VSSSNARPQ 87 (96)
T ss_dssp EEECCCC--
T ss_pred EcCcCCCCC
Confidence 998866543
No 163
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=117.88 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHh-CCCeecCCcEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSVSADGICIAI 187 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l-~g~~~~~gr~i~v 187 (222)
....++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|++|++.| +|..+ +|++|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~-~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV-NGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE-TTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE-CCCEEEE
Confidence 445689999999999999999999999999999999864 799999999999999999998 99998 8999999
Q ss_pred EEec
Q 027505 188 VLIE 191 (222)
Q Consensus 188 ~~a~ 191 (222)
.||+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 164
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=6.8e-19 Score=125.87 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+++++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|++|++ ++..+ +|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~-~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF-HGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE-TTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE-CCEEEEEEEC
Confidence 45789999999999999999999999999999999998 99999999999999999999999 89898 9999999999
Q ss_pred ccCCC
Q 027505 191 EPFNC 195 (222)
Q Consensus 191 ~~~~~ 195 (222)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87553
No 165
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=121.31 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCC-eeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC-CeecCCcEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG-SVSADGICIAI 187 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~-i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g-~~~~~gr~i~v 187 (222)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..+ +|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL-HGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE-TTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE-CCEEEEE
Confidence 45679999999999999999999999999 6666652 479999999999999999999999 888 8999999
Q ss_pred EEeccCCCCC
Q 027505 188 VLIEPFNCQH 197 (222)
Q Consensus 188 ~~a~~~~~~~ 197 (222)
.+++++..+.
T Consensus 78 ~~a~~~~~~~ 87 (93)
T 2cqh_A 78 DYSVSKKLRS 87 (93)
T ss_dssp EECCCCCCCC
T ss_pred EEccCccccC
Confidence 9999876543
No 166
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=5.7e-18 Score=120.34 Aligned_cols=78 Identities=22% Similarity=0.436 Sum_probs=71.1
Q ss_pred cCCCCCCEEEEcCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 107 AASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 107 ~~~~~~~~ifV~nLp~-~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
......++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|+|..+ +|++|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l 87 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN-FGKKL 87 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE-TTEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE-CCEEE
Confidence 3445678999999998 99999999999999999999983 79999999999999999999999999 89999
Q ss_pred EEEEeccC
Q 027505 186 AIVLIEPF 193 (222)
Q Consensus 186 ~v~~a~~~ 193 (222)
.|.+++++
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99999874
No 167
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.5e-19 Score=130.41 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCe----eEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV----ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i----~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
....+|||+|||+++++++|+++|++||.| ..|.|+++. +|+++|||||+|.+.++|++|++. ++..+ +||.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l-~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL-GKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES-SSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee-CCeEE
Confidence 356799999999999999999999999975 689999985 899999999999999999999995 88887 99999
Q ss_pred EEEEeccCC
Q 027505 186 AIVLIEPFN 194 (222)
Q Consensus 186 ~v~~a~~~~ 194 (222)
.|..+.++.
T Consensus 98 ~V~~a~~~e 106 (123)
T 2dha_A 98 ELFRSTAAE 106 (123)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 999987643
No 168
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=7.6e-18 Score=120.71 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|++..+ +|+.|.|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDL-EGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEE-TTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCcc-CCCEEEEE
Confidence 3456899999999999999999999999999999886 46999999999999999999999999 89999999
Q ss_pred EeccCCC
Q 027505 189 LIEPFNC 195 (222)
Q Consensus 189 ~a~~~~~ 195 (222)
+++++..
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9988654
No 169
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.9e-18 Score=127.74 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=71.8
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECC----HHH----HHHHHH--HhCCCe
Q 027505 113 ARLYVGNL----PYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS----VEE----AKEAIR--LFDGSV 178 (222)
Q Consensus 113 ~~ifV~nL----p~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~----~~~----a~~Al~--~l~g~~ 178 (222)
.+|||+|| |+.+++.+|+.+|++||+|.++.++.|+.||+++|||||+|.+ +++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred ecCCcEEEEEEecc
Q 027505 179 SADGICIAIVLIEP 192 (222)
Q Consensus 179 ~~~gr~i~v~~a~~ 192 (222)
| +||+|+|.+-+.
T Consensus 83 I-~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 I-MGFKFEVILNKH 95 (136)
T ss_dssp E-TTEEEEEEECCT
T ss_pred e-cCcEEEEEECcc
Confidence 9 999999998654
No 170
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=136.76 Aligned_cols=99 Identities=26% Similarity=0.282 Sum_probs=85.5
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 112 AARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 112 ~~~ifV~nLp~-~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
.++|||+|||+ .+++++|+++|++||.|.++.+++++ +|||||+|.+.++|++|++.|+|..+ +|+.|.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~-~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL-HGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC-SSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee-cCeEEEEEEe
Confidence 57999999999 99999999999999999999998875 79999999999999999999999999 8999999999
Q ss_pred ccCCCCC--------------------------------CCCCceeEEecCCcCcccc
Q 027505 191 EPFNCQH--------------------------------FGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 191 ~~~~~~~--------------------------------~~~~r~~l~vgnl~~~v~~ 216 (222)
.+..... .......|||+||+++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 134 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 134 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCH
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCH
Confidence 7642100 0122678999999998764
No 171
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-18 Score=126.09 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC--CeecCCcEE
Q 027505 109 SDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG--SVSADGICI 185 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~-~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g--~~~~~gr~i 185 (222)
..+.++|||+|||++ +++++|+++|++||.|.++.|++ +||||||+|.+.++|++|++.|++ ..+ +||+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l-~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWF-QGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCS-SSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceE-CCEEE
Confidence 345789999999998 99999999999999999999974 479999999999999999998864 457 89999
Q ss_pred EEEEeccCCCCC
Q 027505 186 AIVLIEPFNCQH 197 (222)
Q Consensus 186 ~v~~a~~~~~~~ 197 (222)
.|.+|+++....
T Consensus 95 ~V~~a~~~~~~~ 106 (112)
T 1x4f_A 95 KVDLSEKYKKLV 106 (112)
T ss_dssp EEEEECSCSSSS
T ss_pred EEEECccccccc
Confidence 999998866543
No 172
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=4.7e-18 Score=133.79 Aligned_cols=85 Identities=31% Similarity=0.475 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++|++.|+|..+ +|+.|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l-~Gr~l~V 161 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL-DGRPMDI 161 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC-SSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE-CCEEEEE
Confidence 44567899999999999999999999999999999999998 999999999999999999999999999999 8999999
Q ss_pred EEeccCC
Q 027505 188 VLIEPFN 194 (222)
Q Consensus 188 ~~a~~~~ 194 (222)
.+|.+..
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9997744
No 173
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=129.45 Aligned_cols=84 Identities=19% Similarity=0.299 Sum_probs=74.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEE--------EEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA--------EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~--------~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
.....++|||+|||+.+++++|+++|++||.|..+ .+. .+|+++|||||+|.+.++|.+|+..|||..+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 34567899999999999999999999999998764 332 3799999999999999999999999999999
Q ss_pred cCCcEEEEEEeccCCC
Q 027505 180 ADGICIAIVLIEPFNC 195 (222)
Q Consensus 180 ~~gr~i~v~~a~~~~~ 195 (222)
+|+.|.|.+|++...
T Consensus 118 -~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 118 -FGKPMVVQFARSARP 132 (143)
T ss_dssp -TTEECEEEECCCSCC
T ss_pred -CCcEEEEEECCCCCC
Confidence 899999999987554
No 174
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5.4e-19 Score=133.85 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVL 189 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~ 189 (222)
...++|||+|||+++++++|+++|++|| |..|.|++|+ +|+++|||||+|.+.++|++|+ .+|+..+ +||.|.|.+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l-~gR~i~V~~ 119 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANM-QHRYIELFL 119 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSS-SSCCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEE-CCEEEEEEE
Confidence 4567899999999999999999999999 7799999998 5999999999999999999999 6899998 999999999
Q ss_pred eccCCC
Q 027505 190 IEPFNC 195 (222)
Q Consensus 190 a~~~~~ 195 (222)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 988654
No 175
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=1.9e-18 Score=128.65 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCee--EEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVA--SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~--~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
...++|||+|||+++++++|+++|++| .|. +|+|++|+. |+++|||||+|.+.++|++|++ +++..+ +||.|.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l-~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERI-GHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCB-TTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEE-CCEEEEE
Confidence 456789999999999999999999999 677 899999985 9999999999999999999999 477887 9999999
Q ss_pred EEeccC
Q 027505 188 VLIEPF 193 (222)
Q Consensus 188 ~~a~~~ 193 (222)
.++.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988764
No 176
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=124.24 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+++++++|+++|++||.|..+.|+. ++|||||+|.+.++|++|++.|||..+ +|++|.|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF-HHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS-SSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE-CCeEEEEEEC
Confidence 357899999999999999999999999999998864 578999999999999999999999999 8999999999
Q ss_pred ccC
Q 027505 191 EPF 193 (222)
Q Consensus 191 ~~~ 193 (222)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 763
No 177
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-17 Score=116.59 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEE
Q 027505 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAI 187 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v 187 (222)
.....++|||+|| ++++++|+++|++||.|..+.|. +++|||||+|.+.++|++|++.|+|..+ +|++|.|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~v 81 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV-ESVQLKV 81 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE-TTEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE-CCeEEEE
Confidence 3446789999995 89999999999999999999984 4689999999999999999999999999 8999999
Q ss_pred EEeccCCCC
Q 027505 188 VLIEPFNCQ 196 (222)
Q Consensus 188 ~~a~~~~~~ 196 (222)
.+++++...
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 999886643
No 178
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=117.63 Aligned_cols=79 Identities=25% Similarity=0.339 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+++++++|+++|++||.|..| +.++.+|+ ||||+|.+.++|++|++ |+|..+ +|+.|.|.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~-~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL-GGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE-TTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE-CCEEEEEEEC
Confidence 45799999999999999999999999999987 56665665 99999999999999999 999999 8999999999
Q ss_pred ccCCCC
Q 027505 191 EPFNCQ 196 (222)
Q Consensus 191 ~~~~~~ 196 (222)
.++...
T Consensus 80 ~~~~~~ 85 (94)
T 2e5g_A 80 EQKEFQ 85 (94)
T ss_dssp CCSCCC
T ss_pred CcCCCC
Confidence 876543
No 179
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=1.5e-17 Score=131.61 Aligned_cols=98 Identities=26% Similarity=0.499 Sum_probs=81.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc----C-------CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEA----G-------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~----G-------~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
..++|||+|||+++++++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46799999999999999999999999 4 5555554 456899999999999999999 7999999
Q ss_pred cCCcEEEEEEeccCCCCC-----------------CCCCceeEEecCCcCcccc
Q 027505 180 ADGICIAIVLIEPFNCQH-----------------FGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 180 ~~gr~i~v~~a~~~~~~~-----------------~~~~r~~l~vgnl~~~v~~ 216 (222)
+|++|.|.++.+..... .......|||+|||++++.
T Consensus 76 -~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 128 (198)
T 2yh0_A 76 -QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLND 128 (198)
T ss_dssp -TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCH
T ss_pred -cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCH
Confidence 89999999987653211 1145689999999998864
No 180
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=118.23 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEE-EeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~-l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
...++|||+|||+++++++|+++|++||.|..++ ++.++.+| .|||+|.+.++|++|++.|||..+ +|++|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL-ENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC-SSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE-CCcEEEEE
Confidence 3467999999999999999999999999999994 88776443 399999999999999999999999 89999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 999864
No 181
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.73 E-value=1.4e-17 Score=138.41 Aligned_cols=92 Identities=25% Similarity=0.366 Sum_probs=83.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|||+++++++|+++|++||.|..+.+.+ ++|||||+|.+.++|.+|+..|+|..+ +|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i-~g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTIL-KSRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE-TTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEE-CCceeEee
Confidence 34567999999999999999999999999999999864 379999999999999999999999999 89999999
Q ss_pred EeccCCCCCCCCCceeEEecCCcCcccc
Q 027505 189 LIEPFNCQHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 189 ~a~~~~~~~~~~~r~~l~vgnl~~~v~~ 216 (222)
++.+ ...|||+||+++++.
T Consensus 92 ~a~~---------~~~l~v~nl~~~~t~ 110 (261)
T 3sde_A 92 FATH---------GAALTVKNLSPVVSN 110 (261)
T ss_dssp ECCC---------SSEEEEESCCTTCCH
T ss_pred eccc---------CCcccccCCCCCCCH
Confidence 9976 246999999998864
No 182
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=1.8e-17 Score=116.01 Aligned_cols=78 Identities=27% Similarity=0.391 Sum_probs=63.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee-cCCcEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS-ADGICIAI 187 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~-~~gr~i~v 187 (222)
....++|||+|||+++++++|+++|++||.|.+++|+++ +||||||+|.+.++|++ +++..+ ++|++|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 446789999999999999999999999999999999874 68999999999999883 556554 26999999
Q ss_pred EEeccCCC
Q 027505 188 VLIEPFNC 195 (222)
Q Consensus 188 ~~a~~~~~ 195 (222)
.+|.|+..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99988653
No 183
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=2.1e-17 Score=127.92 Aligned_cols=95 Identities=27% Similarity=0.527 Sum_probs=81.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc----C-------CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEA----G-------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~----G-------~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
+.++|||+|||+++++++|+++|++| | .|.++.+. +++|||||+|.+.++|++|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35789999999999999999999999 6 66776654 45799999999999999999 7999999
Q ss_pred cCCcEEEEEEeccCCCCCCCCCceeEEecCCcCcccc
Q 027505 180 ADGICIAIVLIEPFNCQHFGNGRCLVFLSYIILDVHS 216 (222)
Q Consensus 180 ~~gr~i~v~~a~~~~~~~~~~~r~~l~vgnl~~~v~~ 216 (222)
+|++|.|.++.+.... .+...|||+|||++++.
T Consensus 76 -~g~~i~v~~~~~~~~~---~~~~~l~v~nlp~~~t~ 108 (172)
T 2g4b_A 76 -QGQSLKIRRPHDYQPL---PGAHKLFIGGLPNYLND 108 (172)
T ss_dssp -TTEECEEECCSSCCCC---TTTTCEEEECCCTTCCH
T ss_pred -cCceeeecCCcccCCC---CCCCEEEEEcCCCcCCH
Confidence 8999999988765432 34678999999998864
No 184
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.7e-17 Score=115.54 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..+ +|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF-RGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE-TTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE-CCcEEEEEEc
Confidence 46789999999999999999999999 99999884 5789999999999999999999999999 9999999999
Q ss_pred ccCC
Q 027505 191 EPFN 194 (222)
Q Consensus 191 ~~~~ 194 (222)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6643
No 185
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=3.7e-17 Score=126.44 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCC--cEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADG--ICIAIV 188 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~g--r~i~v~ 188 (222)
...+|||+||++.+++++|+++|++||.|.+|.|..+ +++|||||+|.+.++|++|++.|||..| .| ++|+|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i-~g~g~~L~V~ 119 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNI-YNACCTLRID 119 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCS-SSSCSCEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCcEEEEE
Confidence 4467999999999999999999999999999998643 2589999999999999999999999999 55 999999
Q ss_pred EeccCC
Q 027505 189 LIEPFN 194 (222)
Q Consensus 189 ~a~~~~ 194 (222)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999865
No 186
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=1.7e-17 Score=121.46 Aligned_cols=77 Identities=27% Similarity=0.319 Sum_probs=67.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE-----
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC----- 184 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~----- 184 (222)
...++|||+|||+++++++|+++|++||.|..+.|+.+ |||||+|.+.++|++|++.|||..| +|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~-~gr~~~~~~ 85 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF-RSHEGETAY 85 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBC-CCTTSCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEE-CCcEeeeEE
Confidence 35689999999999999999999999999999999765 8999999999999999999999999 8988
Q ss_pred EEEEEeccCC
Q 027505 185 IAIVLIEPFN 194 (222)
Q Consensus 185 i~v~~a~~~~ 194 (222)
|+|..+.++.
T Consensus 86 i~v~~~~~~~ 95 (115)
T 3beg_B 86 IRVKVDGPRS 95 (115)
T ss_dssp CEEEECC---
T ss_pred EEeccCCCCC
Confidence 8888887754
No 187
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=5.9e-17 Score=120.89 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccE-EEEEECCHHHHHHHHHHhCCCeecCC--cEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF-GFVTMGSVEEAKEAIRLFDGSVSADG--ICIAI 187 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~-aFV~f~~~~~a~~Al~~l~g~~~~~g--r~i~v 187 (222)
.-..|||+||++.+++++|+++|++||.|.+|.+..+. +|| |||+|.+.++|++|++.|||..| .| +.|+|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i-~g~~~~LrI 100 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNI-YNACCTLRI 100 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEE-ETTEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCee-cCCCcEEEE
Confidence 34578999999999999999999999999999887642 688 99999999999999999999999 66 89999
Q ss_pred EEeccCCC
Q 027505 188 VLIEPFNC 195 (222)
Q Consensus 188 ~~a~~~~~ 195 (222)
+++++...
T Consensus 101 ~~ak~~~l 108 (130)
T 3zzy_A 101 DFSKLTSL 108 (130)
T ss_dssp EECSCSSC
T ss_pred EecCCCce
Confidence 99998653
No 188
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=120.94 Aligned_cols=79 Identities=15% Similarity=0.266 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCC---CCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEE
Q 027505 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIA 186 (222)
Q Consensus 110 ~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~t---g~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~ 186 (222)
...++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++|++.|++ + +|+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~-~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E-DGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E-TTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c-CCcEEE
Confidence 3568899999999999999999999999999 888888766 79999999999999999999998843 5 788777
Q ss_pred EEEecc
Q 027505 187 IVLIEP 192 (222)
Q Consensus 187 v~~a~~ 192 (222)
+..+.+
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 765544
No 189
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.7e-17 Score=117.99 Aligned_cols=79 Identities=20% Similarity=0.320 Sum_probs=69.1
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee----cCCc
Q 027505 110 DEAARLYV--GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS----ADGI 183 (222)
Q Consensus 110 ~~~~~ifV--~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~----~~gr 183 (222)
.+.++||| +||++++++++|+++|++||.|.++.|+. .||||||+|.+.++|++|++.|||..+ ..|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45678999 77999999999999999999999998764 279999999999999999999999976 1478
Q ss_pred EEEEEEeccCC
Q 027505 184 CIAIVLIEPFN 194 (222)
Q Consensus 184 ~i~v~~a~~~~ 194 (222)
+|.|.+++..+
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 88998887644
No 190
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-17 Score=114.90 Aligned_cols=80 Identities=26% Similarity=0.326 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEe
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLI 190 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a 190 (222)
..++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|++|+.. ...+ +|++|.|.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~-~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLII-KGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEE-TTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--Ccee-CCEEEEEEec
Confidence 4689999999999999999999999999999999764 689999999999999865331 2344 8999999999
Q ss_pred ccCCCCCC
Q 027505 191 EPFNCQHF 198 (222)
Q Consensus 191 ~~~~~~~~ 198 (222)
.++.....
T Consensus 76 ~~~~~~~~ 83 (88)
T 1wf0_A 76 EPKHNSNS 83 (88)
T ss_dssp CCCCCCCS
T ss_pred CCCCCCCC
Confidence 98765443
No 191
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=111.85 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=65.6
Q ss_pred CCE-EEEcCCCCCCCHHH----HHHHHHcc-CCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 112 AAR-LYVGNLPYSMTSSS----LAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 112 ~~~-ifV~nLp~~~t~~~----L~~~F~~~-G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
..+ |||+|||+.+++++ |+++|++| |+|.+| +| |+|||.|.+.++|++|++.|+|..+ .||+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l-~gr~i 76 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV-FGNRI 76 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS-SSSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc-CCceE
Confidence 445 99999999999988 55899999 599988 34 9999999999999999999999999 89999
Q ss_pred EEEEeccCCC
Q 027505 186 AIVLIEPFNC 195 (222)
Q Consensus 186 ~v~~a~~~~~ 195 (222)
+|.+|+.+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999988664
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=3e-16 Score=113.14 Aligned_cols=82 Identities=16% Similarity=0.075 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHHHccCCeeEEEEeecCCC-CCcccEEEEEECCHHHHHHHHHHhCCCeecCCc
Q 027505 110 DEAARLYVGNLPY-----SMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI 183 (222)
Q Consensus 110 ~~~~~ifV~nLp~-----~~t~~~L~~~F~~~G~i~~~~l~~d~~t-g~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr 183 (222)
.+.+.|+|+|+.. +-++++|++.|++||.|.++.|++++.+ ++++|||||+|.+.++|.+|++.|||..+ +||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~-~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF-GGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE-TTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE-CCc
Confidence 4567999999963 2378999999999999999999998754 68999999999999999999999999999 999
Q ss_pred EEEEEEecc
Q 027505 184 CIAIVLIEP 192 (222)
Q Consensus 184 ~i~v~~a~~ 192 (222)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999976
No 193
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.6e-16 Score=126.64 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.++|||+|||+++++++|+++|++||.|..++|+++. +|+++|||||+|.+.++|++|+..++ ..+ +||+|.|.+++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~-~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKY-KETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEE-TTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeE-CCEEEEEEEhH
Confidence 4689999999999999999999999999999999987 69999999999999999999998654 577 99999999887
Q ss_pred cC
Q 027505 192 PF 193 (222)
Q Consensus 192 ~~ 193 (222)
..
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 63
No 194
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.7e-16 Score=116.59 Aligned_cols=75 Identities=25% Similarity=0.267 Sum_probs=67.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccE-EEEEECCHHHHHHHHHHhCCCeecCC--cEEEEEE
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF-GFVTMGSVEEAKEAIRLFDGSVSADG--ICIAIVL 189 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~-aFV~f~~~~~a~~Al~~l~g~~~~~g--r~i~v~~ 189 (222)
..|||+||++.+++++|+++|++||.|.+|.|.. + .|| |||+|.+.++|.+|++.|||..| .| +.|+|.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i-~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADI-YAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCC-BTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCeEEEEEE
Confidence 4578999999999999999999999999999865 2 286 99999999999999999999999 56 6999999
Q ss_pred eccCC
Q 027505 190 IEPFN 194 (222)
Q Consensus 190 a~~~~ 194 (222)
|+++.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 99865
No 195
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.6e-16 Score=117.37 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEE
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIV 188 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~ 188 (222)
....++|||+|| ++++++|+++|++||.|.++.+. +++|||||+|.+.++|++|++.|+|..+ +|+.|.|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~-~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV-ESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC-SSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE-CCeEEEEE
Confidence 345789999995 69999999999999999999985 4689999999999999999999999999 89999999
Q ss_pred EeccCCCC
Q 027505 189 LIEPFNCQ 196 (222)
Q Consensus 189 ~a~~~~~~ 196 (222)
+++++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99986643
No 196
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=1.4e-16 Score=110.20 Aligned_cols=71 Identities=35% Similarity=0.682 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc----C-------CeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEA----G-------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~----G-------~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
..++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|++|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45789999999999999999999999 8 8999998754 799999999999999999 8999999
Q ss_pred cCCcEEEEEE
Q 027505 180 ADGICIAIVL 189 (222)
Q Consensus 180 ~~gr~i~v~~ 189 (222)
+|+.|+|..
T Consensus 78 -~g~~l~V~r 86 (87)
T 2hzc_A 78 -QGQSLKIRR 86 (87)
T ss_dssp -TTEECEEEC
T ss_pred -CCeEEEEeC
Confidence 899998863
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.6e-15 Score=106.45 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCC
Q 027505 108 ASDEAARLYVGNLPYSMT-----------SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~~t-----------~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g 176 (222)
.....++|+|.||..... +++|+++|++||.|..+.| .++ .++|||||+|.+.++|++|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 344678999999944332 5899999999999999966 543 3799999999999999999999999
Q ss_pred CeecCCcEEEEEEeccCCC
Q 027505 177 SVSADGICIAIVLIEPFNC 195 (222)
Q Consensus 177 ~~~~~gr~i~v~~a~~~~~ 195 (222)
..+ +||+|.|.++.++..
T Consensus 87 ~~~-~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWF-GGRQITAQAWDGTTD 104 (112)
T ss_dssp CEE-TTEECEEEECCSCCC
T ss_pred CEE-CCcEEEEEEeCCCCC
Confidence 999 899999999988654
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=6.9e-16 Score=111.04 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=63.1
Q ss_pred EcCCCCCCCHHHHHHHH------------HccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE
Q 027505 117 VGNLPYSMTSSSLAEVF------------AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC 184 (222)
Q Consensus 117 V~nLp~~~t~~~L~~~F------------~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~ 184 (222)
+.|||+.+++++|++.| ++||.|.++.|+++. +++++|||||+|.+.++|.+|++.|||..+ +||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~-~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF-NGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE-TTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE-CCEE
Confidence 45666777777666555 999999999999987 589999999999999999999999999999 9999
Q ss_pred EEEEEe
Q 027505 185 IAIVLI 190 (222)
Q Consensus 185 i~v~~a 190 (222)
|.|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999886
No 199
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=3.3e-15 Score=122.50 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCee
Q 027505 109 SDEAARLYVGNLPYSM---------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVS 179 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~---------t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~ 179 (222)
....++|||+||++.+ ++++|+++|++||.|.+|+|+. +||||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999998 7999999999999999999985 379999999999999999999999998
Q ss_pred c-----------CCcEEEEEEeccCC
Q 027505 180 A-----------DGICIAIVLIEPFN 194 (222)
Q Consensus 180 ~-----------~gr~i~v~~a~~~~ 194 (222)
+ +|+.|.|.||++.+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 3 69999999998754
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1.2e-14 Score=104.62 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=70.5
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHHHccCCeeEEEEeecCCC--CCcccEEEEEECCHHHHHHHHHHhCCCe
Q 027505 111 EAARLYVGNL--PYSMT--------SSSLAEVFAEAGTVASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSV 178 (222)
Q Consensus 111 ~~~~ifV~nL--p~~~t--------~~~L~~~F~~~G~i~~~~l~~d~~t--g~~rG~aFV~f~~~~~a~~Al~~l~g~~ 178 (222)
+.+.|.+.|+ |.+.. +++|++.|++||.|.++.|++++.+ ++++|||||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4667889998 43443 3689999999999999999998754 4689999999999999999999999999
Q ss_pred ecCCcEEEEEEecc
Q 027505 179 SADGICIAIVLIEP 192 (222)
Q Consensus 179 ~~~gr~i~v~~a~~ 192 (222)
+ +||.|.|.++.+
T Consensus 84 f-~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 F-ANRVVVTKYCDP 96 (105)
T ss_dssp E-TTEECEEEEECH
T ss_pred e-CCCEEEEEEeCH
Confidence 9 999999999865
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=4.7e-14 Score=103.68 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHHHHccCCeeEEEEeecCC----CCCcccEEEEEECCHHHHHHHHHHhCCCeecC
Q 027505 111 EAARLYVGNLPY--SM---TSSSLAEVFAEAGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEAIRLFDGSVSAD 181 (222)
Q Consensus 111 ~~~~ifV~nLp~--~~---t~~~L~~~F~~~G~i~~~~l~~d~~----tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~ 181 (222)
+.+.|++.|+-. ++ -+++|++.|++||.|.++.|++++. +++++||+||+|.+.++|.+|++.|||..+ +
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-A 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE-T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE-C
Confidence 467899999832 22 3689999999999999999999864 357889999999999999999999999999 9
Q ss_pred CcEEEEEEecc
Q 027505 182 GICIAIVLIEP 192 (222)
Q Consensus 182 gr~i~v~~a~~ 192 (222)
||.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999865
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.6e-13 Score=96.81 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=63.3
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcE
Q 027505 112 AARLYVGNLP-------YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGIC 184 (222)
Q Consensus 112 ~~~ifV~nLp-------~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~ 184 (222)
.++|-|.-.. ..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|++|++.+++ + .|++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~-~g~~ 81 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L-VDNP 81 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C-SSSB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C-CCCe
Confidence 3455555433 568999999999999999999987 46799999999999999999997554 5 6999
Q ss_pred EEEEEeccCCC
Q 027505 185 IAIVLIEPFNC 195 (222)
Q Consensus 185 i~v~~a~~~~~ 195 (222)
|+|.|++++..
T Consensus 82 l~V~~a~~~~~ 92 (100)
T 2d9o_A 82 LKISWLEGQPQ 92 (100)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999988654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=6.5e-13 Score=114.26 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=65.5
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeec--CCc
Q 027505 108 ASDEAARLYVGN--LPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSA--DGI 183 (222)
Q Consensus 108 ~~~~~~~ifV~n--Lp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~--~gr 183 (222)
...+.++|||+| |++.+++++|+++|++||+|.++.++. +||||||+|.+.++|++|++.|||..++ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345678999999 588999999999999999999987743 4799999999999999999999999884 245
Q ss_pred --EEEEEEec
Q 027505 184 --CIAIVLIE 191 (222)
Q Consensus 184 --~i~v~~a~ 191 (222)
.|.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 45666663
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=3.7e-12 Score=92.93 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCCCC----------CHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeec
Q 027505 111 EAARLYVGNLPYSM----------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSA 180 (222)
Q Consensus 111 ~~~~ifV~nLp~~~----------t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~ 180 (222)
+.+.|.+.|+-..- -+++|++.|++||.|.++.|.++. .+|||||+|.+.++|.+|++.|||..+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f- 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF- 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE-
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE-
Confidence 46678888873322 135789999999999999987653 589999999999999999999999999
Q ss_pred CCcEEEEEEecc
Q 027505 181 DGICIAIVLIEP 192 (222)
Q Consensus 181 ~gr~i~v~~a~~ 192 (222)
+||.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999854
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.9e-11 Score=82.61 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=63.7
Q ss_pred CCCCCEEEEcCCC----CCCCH----HHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeec
Q 027505 109 SDEAARLYVGNLP----YSMTS----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSA 180 (222)
Q Consensus 109 ~~~~~~ifV~nLp----~~~t~----~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~ 180 (222)
.+++.+|+|.-.+ ....+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |||..+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v- 73 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL- 73 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE-
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe-
Confidence 3456788888766 23434 5789999999999999998864 8999999999999999 999999
Q ss_pred CCcEEEEEEeccC
Q 027505 181 DGICIAIVLIEPF 193 (222)
Q Consensus 181 ~gr~i~v~~a~~~ 193 (222)
+||.|+|.++.|.
T Consensus 74 ~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 LNRTITIALKSPS 86 (91)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEeCCCC
Confidence 9999999999873
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.2e-10 Score=85.46 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=67.1
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECC-HHHHHHHHHHhC--CCeecCCc
Q 027505 108 ASDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS-VEEAKEAIRLFD--GSVSADGI 183 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~-~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~-~~~a~~Al~~l~--g~~~~~gr 183 (222)
.-..+..|||+||+++ +++++|+++|++||+|..|.++++.. .|||.|.+ .++|..|++.|+ +..| .|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i-~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQL-RNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCT-TSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEE-eCc
Confidence 4457889999999999 99999999999999999999988763 59999999 899999999995 6667 788
Q ss_pred EEEEEEec
Q 027505 184 CIAIVLIE 191 (222)
Q Consensus 184 ~i~v~~a~ 191 (222)
.+.++...
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88887653
No 207
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.08 E-value=4.1e-13 Score=97.95 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=59.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEE 91 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~ 91 (222)
..||.||++.+ +++.|...|.. .++..+++... ..++|||||+|.+.++|+.| ..+++..+.++...+.......
T Consensus 7 ~lfV~nLp~~~--te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 7 NIFIKNLDKSI--DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp EEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred EEEECCCCCCC--CHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 46899999998 99999999965 56556665554 56899999999999999999 5789999999877664443222
Q ss_pred hHHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHH
Q 027505 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSS 128 (222)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~ 128 (222)
+... ..........+|||+|||+++|++.
T Consensus 85 ~~~~--------~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 85 EREA--------ELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp C------------------------------------
T ss_pred cccc--------ccccccCCCCceEeCCCCCCccccc
Confidence 1111 1111222345799999999998763
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.03 E-value=5.5e-10 Score=90.13 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHccCCeeEEEEeecCC----CCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEecc
Q 027505 124 MTSSSLAEVFAEAGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIEP 192 (222)
Q Consensus 124 ~t~~~L~~~F~~~G~i~~~~l~~d~~----tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~~ 192 (222)
-.+++|++.|++||.|.++.++++.. +++++|++||+|.+.++|.+|++.|||..+ +||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~-~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-AGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS-SSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE-CCeEEEEEEcCH
Confidence 35678999999999999999986643 458999999999999999999999999999 999999998754
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=8.1e-10 Score=76.89 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=63.2
Q ss_pred CCCCCCEEEEcCCCCC-----CCH----HHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCe
Q 027505 108 ASDEAARLYVGNLPYS-----MTS----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSV 178 (222)
Q Consensus 108 ~~~~~~~ifV~nLp~~-----~t~----~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~ 178 (222)
..+++.+|+|.-++.. +.+ .+|.+.|.+||.|..++++.|+ +||+|.+.++|.+|++ |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3456779999888743 333 4688999999999999999874 9999999999999999 99999
Q ss_pred ecCCcEEEEEEecc
Q 027505 179 SADGICIAIVLIEP 192 (222)
Q Consensus 179 ~~~gr~i~v~~a~~ 192 (222)
+ +||.|+|.+..|
T Consensus 82 v-~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 V-KGRAVKISGPSS 94 (95)
T ss_dssp E-TTEEEEEECCCC
T ss_pred e-CCeEEEEeccCC
Confidence 9 899999987544
No 210
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.66 E-value=5.4e-10 Score=80.88 Aligned_cols=98 Identities=8% Similarity=0.063 Sum_probs=78.1
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEE 92 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~ 92 (222)
+.||.||++.+ +++.|...|.. .++..+.+...+.++|||||+|.+.++|..| ..+++..+.++...+........
T Consensus 10 ~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 10 ILYIRNLPYKI--TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 56899999998 88889998854 5666677766678899999999999999999 55899999998877654432211
Q ss_pred HHHHhhhhcccccccCCCCCCEEEEcCCCCCCCHHHHHHHHHccCC
Q 027505 93 EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGT 138 (222)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~ 138 (222)
. ++++...++++|+++|++||.
T Consensus 88 ~------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 88 F------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp T------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred h------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 1 467777889999999999985
No 211
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.56 E-value=1.8e-08 Score=71.98 Aligned_cols=78 Identities=8% Similarity=-0.020 Sum_probs=62.6
Q ss_pred chhhhhcccceeeecCCCCCCCCCCCC-CC---CCccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCc
Q 027505 12 SSLCNKLYNLQAITQIPTNHLPSLFKT-KS---PKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEP 85 (222)
Q Consensus 12 ~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p---~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~ 85 (222)
...+.||.||+|.+ +++.|...|.. .+ +..+.+... ++++|||||+|.+.+++..|..+++..+.++.+.+.
T Consensus 10 ~~~~l~V~nLp~~~--te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSC--TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSC--CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCCC--CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 44568899999998 99999999965 23 455555543 789999999999999999997799999999988886
Q ss_pred chhhhh
Q 027505 86 ETEQEE 91 (222)
Q Consensus 86 ~~~~~~ 91 (222)
.....+
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 655433
No 212
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=2.5e-09 Score=77.14 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=60.9
Q ss_pred hhhhcccceeeecCCCCCCCCCCCCCCCCccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 88 (222)
.+.||.||+|.+ +++.|...|....+..+.+... ++++|||||+|.+.++++.|..+++..+.++.+.+....
T Consensus 17 ~~v~V~nLp~~~--te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 17 LYVSVHGMPFSA--MENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HEEEEECCCSSC--CHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CEEEEeCCCCCC--CHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 378999999998 9999999996655566666543 789999999999999999999899999999877664443
No 213
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.54 E-value=1.2e-09 Score=77.14 Aligned_cols=97 Identities=11% Similarity=0.045 Sum_probs=69.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhhhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQEEE 92 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~~~~ 92 (222)
..||.||++.+ +++.|...|.. .++..+.+... ++|||||+|.+.++|..| ..+++..+.++...+........
T Consensus 2 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 2 KVYVGNLGTGA--GKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp EEEEECCCSSC--SHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 35799999998 88899998854 56666665554 899999999999999999 55899999998877655443221
Q ss_pred HHHHhhhhcccccccCCCCCCEEEEcCCC
Q 027505 93 EEEEAVEEEEEPKVAASDEAARLYVGNLP 121 (222)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ifV~nLp 121 (222)
. ......+.......+||||||+
T Consensus 78 ~------~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 R------SRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp S------SCCCSCCCSCCCCSCCCSCCCC
T ss_pred c------ccCCCCCccccCCCceecCCCC
Confidence 1 1111222233446789999996
No 214
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.51 E-value=8.5e-07 Score=63.06 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=66.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc-----CCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEA-----GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~-----G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
..++|-+-|||..+++..++.+...+ |.|..+.+..|. |-|+|+|.+...|.+|.-.|+|.+| +||+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef-~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQF-QGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEE-TTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeee-cCeEE
Confidence 46788899999999999999999999 999999998885 7899999999999999988999999 89999
Q ss_pred EEEE
Q 027505 186 AIVL 189 (222)
Q Consensus 186 ~v~~ 189 (222)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 8863
No 215
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.50 E-value=7.2e-09 Score=76.65 Aligned_cols=72 Identities=6% Similarity=-0.058 Sum_probs=59.0
Q ss_pred hhhhcccceeeecCCCCCCCCCCCCCCCC--ccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKTKSPK--PLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~~p~~--~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 87 (222)
-+.||.||+|.+ +++.|+..|....+. .+.+... ++++|||||+|.++++++.|...++..+.++.+.+...
T Consensus 43 ~~lfVgnLp~~~--te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 43 GFVRLRGLPFGC--TKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp CEEEEECCCTTC--CHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 478999999998 999999999665433 4444433 88999999999999999999878889999998877554
No 216
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=7.6e-09 Score=73.77 Aligned_cols=74 Identities=3% Similarity=-0.065 Sum_probs=60.8
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 89 (222)
-+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..|..+++..++++...+.....
T Consensus 12 ~~lfV~~Lp~~~--te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 12 RSVYIKGFPTDA--TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GCEEEECCCTTC--CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CEEEEECCCCCC--CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 467899999998 99999999844 56566665543 7899999999999999999977999999999887755443
No 217
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.45 E-value=1.5e-07 Score=71.06 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=53.7
Q ss_pred CCCcccEEEEEECCHHHHHHHHHHh-CCCeecCCcEEEEEEeccCC-------------CCCCCCCceeEEecCCcCccc
Q 027505 150 TDRSRGFGFVTMGSVEEAKEAIRLF-DGSVSADGICIAIVLIEPFN-------------CQHFGNGRCLVFLSYIILDVH 215 (222)
Q Consensus 150 tg~~rG~aFV~f~~~~~a~~Al~~l-~g~~~~~gr~i~v~~a~~~~-------------~~~~~~~r~~l~vgnl~~~v~ 215 (222)
..+.+|+++++|.+.++|++|++.+ ||..+ +| .+.+.++.++. ........++|||||||++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~-~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGV-DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTC-CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCC-CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 4577999999999999999999999 99999 89 99999886521 122334678999999999987
Q ss_pred c
Q 027505 216 S 216 (222)
Q Consensus 216 ~ 216 (222)
.
T Consensus 87 ~ 87 (150)
T 2i2y_A 87 K 87 (150)
T ss_dssp C
T ss_pred H
Confidence 5
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.38 E-value=4.4e-07 Score=68.94 Aligned_cols=75 Identities=8% Similarity=0.069 Sum_probs=49.1
Q ss_pred EEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCc------EEEEEEeccCC---CCCCCCCceeEEecCCc
Q 027505 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGI------CIAIVLIEPFN---CQHFGNGRCLVFLSYII 211 (222)
Q Consensus 141 ~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr------~i~v~~a~~~~---~~~~~~~r~~l~vgnl~ 211 (222)
.+.|+++. .+++|||||+|.+.++|++|++.+++....+|. ........... ..........|||||||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 45677774 478999999999999999999887754332332 11222221111 11223346899999999
Q ss_pred Cccccc
Q 027505 212 LDVHSI 217 (222)
Q Consensus 212 ~~v~~~ 217 (222)
++++.-
T Consensus 80 ~~~~~~ 85 (158)
T 2kn4_A 80 YRTSPD 85 (158)
T ss_dssp TTCCHH
T ss_pred CCCCHH
Confidence 998753
No 219
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=1.6e-08 Score=71.82 Aligned_cols=70 Identities=10% Similarity=0.037 Sum_probs=57.3
Q ss_pred hhhhcccceeeecCCCCCCCCCCCCCCCCccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEP 85 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~ 85 (222)
-+.||.||+|.+ +++.|...|...-+..+.+... ++++|||||+|.+.++|+.|..+++..+.++.+.+.
T Consensus 16 ~~l~V~nLp~~~--te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 16 HCVHMRGLPYRA--TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 87 (102)
T ss_dssp CEEEEESCCTTC--CHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 468899999998 9999999996633345555443 788999999999999999998889999998876653
No 220
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.36 E-value=7.9e-09 Score=72.63 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=51.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-C--CCCccccccC---CCCCCcccccccchhhhhhh-hccCCC----cccCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-K--SPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGF----QVTEDSQD 83 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~--p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~----~~~~~~~~ 83 (222)
+.||.||++.| +++.|+..|.. . ++..+++..+ ++++|||||+|.+.++|..| ..+++. .++++...
T Consensus 11 tlfV~nL~~~~--tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 11 TIILRNIAPHT--VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp EEEEESCCTTC--CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred EEEEeCCCCcC--CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 46899999999 99999999965 3 3445555443 78999999999999999998 566665 36665544
Q ss_pred C
Q 027505 84 E 84 (222)
Q Consensus 84 ~ 84 (222)
+
T Consensus 89 V 89 (95)
T 2lkz_A 89 V 89 (95)
T ss_dssp E
T ss_pred E
Confidence 3
No 221
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.36 E-value=1.3e-08 Score=76.32 Aligned_cols=74 Identities=8% Similarity=-0.019 Sum_probs=60.5
Q ss_pred hhhhhcccceeeecCCCCCCCCCCCC-CC---CCccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcc
Q 027505 13 SLCNKLYNLQAITQIPTNHLPSLFKT-KS---PKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 13 ~~~~~~~nlsf~t~~~~~~l~~~f~~-~p---~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 86 (222)
.-+.||.||+|++ +++.|...|.. .+ +..+.+... ++++|||||+|.+.++++.|..+++..+.++.+.+..
T Consensus 44 ~~~lfVgnLp~~~--te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 44 GFVVKLRGLPWSC--SVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFK 121 (136)
T ss_dssp TCEEEEESCCTTC--CHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEE
T ss_pred CCEEEEeCCCCCC--CHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEE
Confidence 3468999999998 99999999965 34 455665543 7899999999999999999977999999998877655
Q ss_pred hh
Q 027505 87 TE 88 (222)
Q Consensus 87 ~~ 88 (222)
..
T Consensus 122 a~ 123 (136)
T 2hgl_A 122 SH 123 (136)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 222
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.33 E-value=4.1e-08 Score=73.78 Aligned_cols=71 Identities=11% Similarity=0.041 Sum_probs=58.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCCCCCCccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||+|++ +++.|...|...-+..+.+... ++++|||||+|.+.++++.|..+++..+.++.+.+...
T Consensus 48 ~lfV~nLp~~~--te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 48 CVHMRGLPYKA--TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp CEECCSCCTTC--CHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 67999999998 9999999996633445555443 78999999999999999999988999999998777444
No 223
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.33 E-value=1.4e-08 Score=74.02 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=60.8
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CC---CCccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KS---PKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p---~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 87 (222)
-+.||.||+|.+ +++.|...|.. .+ +..+++... ++++|||||+|.+.++++.|..+++..+.++.+.+...
T Consensus 18 ~~l~V~nLp~~~--te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 18 YVVKLRGLPWSC--SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKS 95 (118)
T ss_dssp CEEEEESCCTTC--CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEE
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 468899999998 99999999965 33 345555433 78999999999999999999779999999998777655
Q ss_pred hhhh
Q 027505 88 EQEE 91 (222)
Q Consensus 88 ~~~~ 91 (222)
...+
T Consensus 96 ~~~~ 99 (118)
T 2db1_A 96 HRTE 99 (118)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 4433
No 224
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.33 E-value=1.3e-08 Score=70.40 Aligned_cols=72 Identities=8% Similarity=-0.032 Sum_probs=56.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-C--CCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-K--SPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~--p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||++.+ +++.|+..|.. . ++...++... +.++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 3 ~l~V~nL~~~~--t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 3 ALYIGNLTWWT--TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp -CEEESCCTTC--CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 56899999998 88889988844 4 5666666543 78899999999999999999 589999999998766444
Q ss_pred h
Q 027505 88 E 88 (222)
Q Consensus 88 ~ 88 (222)
.
T Consensus 81 ~ 81 (90)
T 3p5t_L 81 N 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 225
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=2.5e-08 Score=73.40 Aligned_cols=75 Identities=7% Similarity=0.037 Sum_probs=60.0
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCC----Ccccccc--CCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSP----KPLKLEK--AQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~----~~~~l~~--~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 86 (222)
...||.||+|.+ +++.|+..|.. .++ ..+.+.. .++++|||||+|.+.++++.|...++..+.++.+.+..
T Consensus 24 ~~v~V~nLp~~~--te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 24 VIVRMRGLPFTA--TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp CEEEECSCCTTC--CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 468899999998 99999999954 442 3455443 37899999999999999999977799999999887765
Q ss_pred hhhh
Q 027505 87 TEQE 90 (222)
Q Consensus 87 ~~~~ 90 (222)
....
T Consensus 102 a~~~ 105 (123)
T 2dha_A 102 STAA 105 (123)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 5433
No 226
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=4.2e-08 Score=70.88 Aligned_cols=76 Identities=7% Similarity=0.001 Sum_probs=60.4
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCC-CccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSP-KPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~-~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 89 (222)
-+.||.||++.+ +++.|...|.. ..+ ..+.+... ++++|||||+|.+.++|..|...++..+.++.+.+.....
T Consensus 16 ~~l~V~nLp~~~--t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 16 VCAHITNIPFSI--TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CEEEEESCCTTS--CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred cEEEEeCcCCcC--CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCH
Confidence 478899999998 99999999865 343 34555443 7899999999999999999977799999998887765544
Q ss_pred hh
Q 027505 90 EE 91 (222)
Q Consensus 90 ~~ 91 (222)
..
T Consensus 94 ~~ 95 (114)
T 2cpy_A 94 ED 95 (114)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 227
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.27 E-value=6.3e-08 Score=64.28 Aligned_cols=67 Identities=6% Similarity=-0.026 Sum_probs=54.6
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
.||.||++.+ +++.|...|.. .++....+... +.++|||||+|.+.++++.+..+++..+.++...+
T Consensus 2 l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 72 (75)
T 2mss_A 2 IFVGGLSVNT--TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 72 (75)
T ss_dssp EEEECCCSSC--CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEE
T ss_pred EEEecCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEE
Confidence 4799999998 88889988854 45555555443 68899999999999999999889999998877543
No 228
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.26 E-value=1.1e-08 Score=73.73 Aligned_cols=73 Identities=7% Similarity=-0.025 Sum_probs=59.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~ 89 (222)
..||.||++.+ +++.|+..|.. .++..+++..+ ++++|||||+|.+.++|+.| ..+++..+.++.+.+.....
T Consensus 8 ~lfV~nL~~~~--te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 8 EVTFARLNDNV--RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp EEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred EEEEECCCCCC--CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 57899999998 99999999965 45555555443 68999999999999999999 67899999999887755443
No 229
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.26 E-value=8.9e-09 Score=71.11 Aligned_cols=72 Identities=14% Similarity=0.000 Sum_probs=58.7
Q ss_pred cccchhhhhcccceeeecCCCCCCCCCCC-CCCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 9 AASSSLCNKLYNLQAITQIPTNHLPSLFK-TKSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 9 ~~~~~~~~~~~nlsf~t~~~~~~l~~~f~-~~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
-+|..|. |.||++.+ +++.|+++|. ..|.....+. .++|||||+|.+.++|++| ..+++..+.++.+.+..
T Consensus 5 ~~~~wL~--VgNL~~~~--te~~L~~lF~q~G~V~~~~l~---~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 5 WGSSWLL--LKNLTAQI--DGPTLRTLCMQHGPLVSFHPY---LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCCCEEE--EECCCTTC--CCHHHHHHHHHHSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CccceEE--EeCCCccC--CHHHHHHHHHhhCCEEEEEEc---CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 4466666 88999998 9999999994 4676666653 4799999999999999999 88999999988776644
Q ss_pred h
Q 027505 87 T 87 (222)
Q Consensus 87 ~ 87 (222)
.
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 230
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=4.6e-08 Score=69.52 Aligned_cols=71 Identities=6% Similarity=-0.059 Sum_probs=56.1
Q ss_pred hhhhcccceeeecCCCCCCCCCCCCC-CCCc-ccccc--CCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKTK-SPKP-LKLEK--AQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~~-p~~~-~~l~~--~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 86 (222)
-..||.||+|.+ +++.|...|... ++.. +.+.. .++++|||||+|.+.++++.|...++..+.++.+.+..
T Consensus 16 ~~l~V~nLp~~~--te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 16 GFVRLRGLPFGC--SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CEEEEESCCTTC--CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 467899999998 999999999653 3222 33333 37899999999999999999977799999998776643
No 231
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.18 E-value=1.6e-08 Score=71.50 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=56.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
..||.||++.+ +++.|...|.. .++...++... +.++|||||+|.+.++|..| ..+++..+.++...+.
T Consensus 21 ~lfV~nLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 21 NLIVNYLPQNM--TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35899999998 99999999954 56666666543 78899999999999999999 5789999998776553
No 232
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.17 E-value=8.7e-08 Score=63.53 Aligned_cols=67 Identities=9% Similarity=-0.023 Sum_probs=54.3
Q ss_pred hhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 16 NKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
.||.||++.+ +++.|...|.. .++....+... +.++|||||+|.+.+++..|...++..+.++...+
T Consensus 2 l~v~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v 72 (75)
T 1iqt_A 2 IFVGGLSPDT--PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 72 (75)
T ss_dssp EEESCCCSSC--CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence 5799999998 88889988854 45555555443 68899999999999999999878888888876544
No 233
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=1.3e-07 Score=69.22 Aligned_cols=76 Identities=8% Similarity=-0.012 Sum_probs=59.3
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccc-c--ccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhh
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLK-L--EKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~-l--~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 89 (222)
.+.||.||+|.+ +++.|...|.. .++.... + ...++++|||||+|.+.++|..|..+++..+.++.+.+.....
T Consensus 26 ~~l~V~nLp~~~--te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 26 FCVYLKGLPFEA--ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CEEEEECCCTTC--CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECH
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCH
Confidence 478999999998 89999998865 3433312 1 2237889999999999999999977999999999887765544
Q ss_pred hh
Q 027505 90 EE 91 (222)
Q Consensus 90 ~~ 91 (222)
..
T Consensus 104 ~~ 105 (124)
T 1wel_A 104 KG 105 (124)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 234
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.16 E-value=2.5e-08 Score=69.27 Aligned_cols=70 Identities=6% Similarity=0.003 Sum_probs=54.6
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-C-CCCccccccC---CCCCCcccccccchhhhhhhh-cc-CCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-K-SPKPLKLEKA---QNPSALHLSLLSLSYFRQFSA-SF-DGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~-p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~-~~-~~~~~~~~~~~~~~ 86 (222)
..||.||++.+ +++.|+..|.. . ++..+++... +.++|||||+|.+.++|..|. .+ ++..+.++...+..
T Consensus 3 ~i~v~nLp~~~--te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 3 IVMLRMLPQAA--TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp EEEEETCCSSC--CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 35899999998 99999999954 3 5666766553 789999999999999999995 34 34567777665533
No 235
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.15 E-value=1.7e-08 Score=72.48 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=54.1
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.+++..|....+..+.++...+
T Consensus 27 ~lfV~nLp~~~--te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 27 KMFIGGLSWQT--TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp CEEEESCCTTC--CHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 78999999998 89899988855 45555555443 78899999999999999999666667777766544
No 236
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.14 E-value=1.2e-07 Score=64.03 Aligned_cols=69 Identities=7% Similarity=0.020 Sum_probs=52.0
Q ss_pred hhhcccceeeecC----CCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhh-hccCCCcccCC-CCC
Q 027505 15 CNKLYNLQAITQI----PTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFS-ASFDGFQVTED-SQD 83 (222)
Q Consensus 15 ~~~~~nlsf~t~~----~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~-~~~ 83 (222)
+.||.||++.+.. +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..++|..+.++ ...
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3579999998622 23667777744 45555555533 78999999999999999999 66899999987 654
No 237
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.13 E-value=3.3e-08 Score=69.80 Aligned_cols=72 Identities=10% Similarity=-0.040 Sum_probs=57.6
Q ss_pred hhhccccee------eecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccC-CCC
Q 027505 15 CNKLYNLQA------ITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTE-DSQ 82 (222)
Q Consensus 15 ~~~~~nlsf------~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~-~~~ 82 (222)
+.||.||++ .+ +++.|...|.. .++..+.+... ++++|||||+|.+.++|..| ..+++..+.+ +..
T Consensus 8 ~vfV~nLp~v~~~~~~~--~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPV--LKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp EEEEESCCCCBGGGHHH--HHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred EEEEeCCCcCChHHHHH--HHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 678999999 76 77888888854 45555555543 67999999999999999999 5799999998 877
Q ss_pred CCcchh
Q 027505 83 DEPETE 88 (222)
Q Consensus 83 ~~~~~~ 88 (222)
.+....
T Consensus 86 ~V~~a~ 91 (100)
T 3ns6_A 86 FLYTMK 91 (100)
T ss_dssp EEEESH
T ss_pred EEEECc
Confidence 765543
No 238
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.11 E-value=3.1e-07 Score=64.59 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=57.1
Q ss_pred hhhcccceeeecCCCCCCCCCCCCCCCCcccccc----CCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEK----AQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~----~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|..--+..+.+.. .++++|||||+|.+.+++..|..+++..+.++...+...
T Consensus 21 ~l~V~nLp~~~--t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 21 TAFLGNLPYDV--TEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp EEEESCCSSCC--SSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 67899999998 999999888552144555443 367899999999999999999889999999988776543
No 239
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.09 E-value=5.5e-08 Score=70.27 Aligned_cols=71 Identities=6% Similarity=-0.062 Sum_probs=57.1
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-C-CCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-K-SPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~-p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
...||.||++.+ +++.|+..|.. . .+....+... .++|||||+|.+.++|+.| ..+++..++++.+.+...
T Consensus 29 ~~l~VgnLp~~~--te~dL~~~F~~~G~~v~~v~i~~~-~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 29 YRITMKNLPEGC--SWQDLKDLARENSLETTFSSVNTR-DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp EEEEEECSSCCC--CHHHHHHHHHHHTCCCSEEECSSC-SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CEEEEECCCCCC--CHHHHHHHHHHhCCeeEEEEEEcC-CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 467899999998 99999999954 4 4555555433 6899999999999999999 579999999987766443
No 240
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.08 E-value=2e-07 Score=68.89 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=57.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCc--cccccC---CCCCCcccccccchhhhhhh-hccCCC----cccCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKP--LKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGF----QVTEDSQD 83 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~--~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~----~~~~~~~~ 83 (222)
..||.||++.+ +++.|...|.. .++.. +++... ++++|||||+|.+. ++..+ ..+++. .++++...
T Consensus 25 ~lfV~nL~~~~--te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~ 101 (131)
T 2m2b_A 25 TIILRNLNPHS--TMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTIN 101 (131)
T ss_dssp EEEECSCCTTC--CSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEE
Confidence 67899999998 99999999955 45544 455443 78999999999999 88888 888999 99999887
Q ss_pred Ccchh
Q 027505 84 EPETE 88 (222)
Q Consensus 84 ~~~~~ 88 (222)
+....
T Consensus 102 V~~a~ 106 (131)
T 2m2b_A 102 VEFAK 106 (131)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 75543
No 241
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.35 E-value=4.6e-07 Score=65.36 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=57.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCc--------cccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKP--------LKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDS 81 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~--------~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~ 81 (222)
..||.||++.+ +++.|...|.. .++.. +.+... +.++|||||+|.+.++|..| ..+++..+.++.
T Consensus 9 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 9 TIFVQGLGENV--TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 56899999998 99999999965 34443 444433 68899999999999999999 558999999988
Q ss_pred CCCcchh
Q 027505 82 QDEPETE 88 (222)
Q Consensus 82 ~~~~~~~ 88 (222)
..+....
T Consensus 87 l~V~~a~ 93 (116)
T 2lcw_A 87 IKVSFAT 93 (116)
Confidence 7765543
No 242
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=4e-08 Score=67.83 Aligned_cols=71 Identities=7% Similarity=-0.039 Sum_probs=57.3
Q ss_pred hhhhhcccceeeecCCCCCCCCCCCCCCCCccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCc
Q 027505 13 SLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEP 85 (222)
Q Consensus 13 ~~~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~ 85 (222)
.-..||.||++.+ +++.|...|....+..+.+... +.++|||||+|.+.++++.|..+++..+.++.+.+.
T Consensus 10 ~~~l~v~nLp~~~--t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 10 CHTVKLRGAPFNV--TEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 82 (91)
T ss_dssp CCEEEEECCCSSC--CHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred ccEEEEECCCCCC--CHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence 3467899999998 8889998886545566655543 788999999999999999996699999988766553
No 243
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.05 E-value=6.5e-08 Score=74.04 Aligned_cols=74 Identities=8% Similarity=0.024 Sum_probs=60.1
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-C--CCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-K--SPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~--p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
-..||.||++.+ +++.|...|.. . .+..+++..+ +.++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 56 ~~lfVgnLp~~~--te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 56 AAVYVGSFSWWT--TDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp CEEEEECCCTTC--CHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 367899999998 99999999843 4 5556665433 78999999999999999999 67799999999887765
Q ss_pred hhh
Q 027505 87 TEQ 89 (222)
Q Consensus 87 ~~~ 89 (222)
...
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 543
No 244
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.05 E-value=3.4e-07 Score=62.85 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=57.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
..||.||++.+ +++.|...|.. .++....+... +.++|||||+|.+.+ +..| ..+++..+.++...+....
T Consensus 3 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 3 NIYVGNLVYSA--TSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEECTTS--SHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred EEEECCCCCCC--CHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 35799999998 89999999955 56666666544 688999999999999 8877 7789999999888775543
No 245
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=4e-07 Score=60.50 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=52.0
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
+.||.||++.+ +++.|...|.. .++....+... +.++|||||+|.+.+++..|.......+.++...+
T Consensus 2 ~l~v~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 73 (77)
T 1uaw_A 2 KMFIGGLSWQT--TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 73 (77)
T ss_dssp CEEEESCCSSC--CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEE
Confidence 35799999998 89899988865 45555555443 68899999999999999999443337788776543
No 246
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.00 E-value=1.6e-07 Score=65.73 Aligned_cols=72 Identities=7% Similarity=-0.028 Sum_probs=57.9
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 87 (222)
-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..|..+++..+.++...+...
T Consensus 11 ~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 11 NKIFVGGIPHNC--GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CEEEEESCCSSC--CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 367899999998 99999988865 45555555443 67899999999999999999769999999887766443
No 247
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=2.5e-07 Score=65.23 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=60.4
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~~ 89 (222)
+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+.....
T Consensus 10 ~l~V~nlp~~~--~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 10 SVFVGNIPYEA--TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp CEEEESCCTTS--CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred EEEEeCCCCcC--CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 57899999998 88889988854 46666665533 67799999999999999999 46999999999887765554
Q ss_pred hhh
Q 027505 90 EEE 92 (222)
Q Consensus 90 ~~~ 92 (222)
...
T Consensus 88 ~~~ 90 (104)
T 1p1t_A 88 EKN 90 (104)
T ss_dssp TTH
T ss_pred ccc
Confidence 443
No 248
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=1.9e-07 Score=67.14 Aligned_cols=73 Identities=7% Similarity=0.038 Sum_probs=59.0
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcchhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQ 89 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 89 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|+.|..+++..+.++...+.....
T Consensus 27 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 27 TVFCMQLAARI--RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp EEEEESCCTTC--CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 67899999998 88899998865 45555555543 6789999999999999999998899999998877655443
No 249
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=3.4e-07 Score=64.73 Aligned_cols=72 Identities=8% Similarity=-0.028 Sum_probs=57.4
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 16 ~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 16 ATVYVGGLDEKV--SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp TEEEEECCCTTC--CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 467899999998 88899988854 45555555442 67899999999999999999 558999999988766444
No 250
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=3e-07 Score=62.43 Aligned_cols=69 Identities=12% Similarity=-0.031 Sum_probs=54.9
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
-..||.||++.+ +++.|...|.. .++....+... +.++|||||+|.+.++|..| ..+++..+.++....
T Consensus 6 ~~l~v~nlp~~~--t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 6 SGLYIRGLQPGT--TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp CEEEEESCCTTC--CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 356799999998 88999999965 45455554433 68899999999999999999 558998888877654
No 251
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.93 E-value=1.3e-07 Score=66.85 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=57.6
Q ss_pred hhhhcccceeeecCCCCCCCCCCCCCCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 87 (222)
-+.||.||++.+ +++.|...|....+..+.+... +.++|||||+|.+.+++..|..+++..+.++...+...
T Consensus 16 ~~l~V~nLp~~~--t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 16 YTAYVGNLPFNT--VQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp EEEEEESCCTTC--CHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred eEEEEeCCCCCC--CHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 367899999998 8889998886544455555433 67899999999999999999989999999887665443
No 252
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.93 E-value=2.3e-07 Score=68.62 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=55.6
Q ss_pred hhhcccceeeecCCCCCCC----CCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 15 CNKLYNLQAITQIPTNHLP----SLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~----~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
..||.||++.+ +++.|+ ..|.. .++..+.+...++++|||||+|.+.++|..| ..++|..+.++.+.+....
T Consensus 31 ~LfV~nL~~~~--~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 31 VVLITNINPEV--PKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp EEEEESCCTTS--CHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 57899999997 666554 45633 4544455544578999999999999999999 6899999999988765544
Q ss_pred h
Q 027505 89 Q 89 (222)
Q Consensus 89 ~ 89 (222)
.
T Consensus 109 ~ 109 (127)
T 2a3j_A 109 T 109 (127)
T ss_dssp C
T ss_pred C
Confidence 3
No 253
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.92 E-value=1.7e-07 Score=64.21 Aligned_cols=70 Identities=11% Similarity=-0.010 Sum_probs=56.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCcccccc---CCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEK---AQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~---~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 86 (222)
+.||.||++.+ +++.|...|.. .++....+.. .+.++|||||+|.+.+++..|..+++..+.++...+..
T Consensus 8 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 8 SIYVGNVDYGA--TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81 (89)
T ss_dssp EEEEESCCTTC--CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEE
Confidence 56899999998 88889988865 4545555443 26889999999999999999998999999888766543
No 254
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.92 E-value=2.5e-07 Score=65.45 Aligned_cols=73 Identities=8% Similarity=0.001 Sum_probs=57.7
Q ss_pred hhhhhcccceeeecCCCCCCCCCCCCCCCCccccccC----CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcch
Q 027505 13 SLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKA----QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 13 ~~~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~----~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 87 (222)
+-+.||.||++.+ +++.|...|...-+..+.+... +.++|||||+|.+.++|..|..+++..+.++...+...
T Consensus 15 ~~~l~V~nlp~~~--t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 15 PYTAFLGNLPYDV--TEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp CEEEEEESCCSSC--CHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCcC--CHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 3478899999998 8999998886532445555443 57899999999999999999988999998887665443
No 255
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.91 E-value=5.2e-07 Score=65.35 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=58.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|+.| ..+++..+.++...+....
T Consensus 9 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 9 KLFIGGLNRET--NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp EEEEECCTTTC--CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 56799999998 88899988844 56666666553 78899999999999999999 5689999999887765443
No 256
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=3.1e-07 Score=63.65 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=57.6
Q ss_pred hhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 13 SLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 13 ~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+-+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 5 ~~~l~v~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 5 SSGLYVGSLHFNI--TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCEEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CcEEEEeCCCCCC--CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3467899999998 88889988865 35455555443 67899999999999999999 558999999988766443
No 257
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.90 E-value=3.9e-07 Score=65.40 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=54.6
Q ss_pred hhhcccceeeecCCCCCCC---CCCCC-CCCCccccccC------CCCCCcccccccchhhhhhh-hccCCCcccCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLP---SLFKT-KSPKPLKLEKA------QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQD 83 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~---~~f~~-~p~~~~~l~~~------~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~ 83 (222)
..||.||++.+ +++.|. ..|.. .++..+.+... .+++|||||+|.+.++|+.| ..+++..++++...
T Consensus 17 ~l~V~nLp~~~--~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 17 LVFVVGLSQRL--ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp CEEEEEECTTT--CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred EEEEECCCCCC--CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 67899999998 888888 88855 45555555433 26779999999999999999 56799999988765
Q ss_pred Ccc
Q 027505 84 EPE 86 (222)
Q Consensus 84 ~~~ 86 (222)
+..
T Consensus 95 V~~ 97 (111)
T 2cpi_A 95 ASL 97 (111)
T ss_dssp EES
T ss_pred EEe
Confidence 533
No 258
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.90 E-value=2.2e-07 Score=64.03 Aligned_cols=74 Identities=8% Similarity=-0.021 Sum_probs=58.4
Q ss_pred chhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 12 SSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 12 ~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
-.-+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 7 ~~~~l~V~nlp~~~--t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDF--TWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTC--CHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34467899999998 88889988854 45555555443 67899999999999999999 568999999988776443
No 259
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.90 E-value=4e-07 Score=73.90 Aligned_cols=73 Identities=8% Similarity=-0.032 Sum_probs=59.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-C--CCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-K--SPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~--p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|+..|.. . .+..+++... ++++|||||+|.+.++|..| ..+++..+.++.+.+...
T Consensus 70 ~lfVgnL~~~~--te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 70 ALYIGNLTWWT--TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 57999999998 99999999954 4 5566665543 78999999999999999999 558999999998877655
Q ss_pred hh
Q 027505 88 EQ 89 (222)
Q Consensus 88 ~~ 89 (222)
..
T Consensus 148 ~~ 149 (229)
T 3q2s_C 148 NK 149 (229)
T ss_dssp CH
T ss_pred CC
Confidence 43
No 260
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=2.3e-07 Score=64.86 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=57.0
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 9 ~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 9 GRLFVRNLSYTS--SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp EEEEEECCCTTC--CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 367899999998 88889988854 45555555442 67899999999999999999 489999999887665443
No 261
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.87 E-value=1.1e-07 Score=65.04 Aligned_cols=68 Identities=9% Similarity=-0.056 Sum_probs=54.0
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQD 83 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 83 (222)
-..||.||++.+ +++.|...|.. .++....+... +.++|||||+|.+.++++.|...++..+.++...
T Consensus 12 ~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 83 (87)
T 3s7r_A 12 GKMFVGGLSWDT--SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID 83 (87)
T ss_dssp TEEEEECCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEE
Confidence 367899999998 89999999855 45555555433 6889999999999999999987788777776543
No 262
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=3.3e-07 Score=64.43 Aligned_cols=71 Identities=6% Similarity=-0.034 Sum_probs=57.2
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
-+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 13 ~~l~V~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 13 RVLYVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp SCEEEESCCSSC--CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 367899999998 88899988865 46666666543 67899999999999999999 47899999887765543
No 263
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=3.4e-07 Score=64.38 Aligned_cols=74 Identities=11% Similarity=-0.013 Sum_probs=59.3
Q ss_pred chhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 12 SSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 12 ~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
..-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 11 ~~~~l~v~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 11 DEGKLFVGGLSFDT--NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCSEEEEESCCTTC--CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCEEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34478899999998 88889988854 46666666553 67899999999999999999 58899999998776644
Q ss_pred h
Q 027505 87 T 87 (222)
Q Consensus 87 ~ 87 (222)
.
T Consensus 89 a 89 (102)
T 1x5s_A 89 A 89 (102)
T ss_dssp E
T ss_pred C
Confidence 3
No 264
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=3.7e-07 Score=65.34 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=56.7
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
-..||.||++.+ +++.|...|.. .++..+++... +.++|||||+|.+.++|..| ..+++..+.++...+.
T Consensus 30 ~~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 30 KRLHVSNIPFRF--RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CEEEEESCCTTC--CHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CEEEEECCCCcC--CHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 367899999998 88899988855 56666666554 56899999999999999999 5589999988776553
No 265
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=2.3e-07 Score=66.23 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=57.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
..||.||++.+ +++.|...|.. .++..+.+.....++|||||+|.+.++|+.| ..+++..+.++.+.+..
T Consensus 24 ~l~V~nLp~~~--t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 24 RIYVGNLPPDI--RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp EEEEESCCTTC--CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 67899999998 89999999855 4656666666667899999999999999999 58899999887766543
No 266
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.86 E-value=1.9e-07 Score=70.01 Aligned_cols=72 Identities=11% Similarity=0.005 Sum_probs=56.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCc--------cccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKP--------LKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~--------~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
..||.||++.+ +++.|...|.. .++.. +.+...+.++|||||.|.+.++|..| ..+++..+.++...+
T Consensus 47 ~l~V~nLp~~~--te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 47 RIYVKNLAKHV--QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp EEEEEEECTTC--CHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 67899999998 88899988855 44443 22233478999999999999999999 558999999988776
Q ss_pred cchh
Q 027505 85 PETE 88 (222)
Q Consensus 85 ~~~~ 88 (222)
....
T Consensus 125 ~~a~ 128 (143)
T 3egn_A 125 QFAR 128 (143)
T ss_dssp EECC
T ss_pred EECC
Confidence 5543
No 267
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.86 E-value=5.3e-07 Score=66.62 Aligned_cols=71 Identities=8% Similarity=0.120 Sum_probs=57.4
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|+.| ..+++..+.++...+...
T Consensus 48 ~l~V~nLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 48 CLGVFGLSLYT--TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CBCEETCTTSC--CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 68899999998 88899988865 45555555543 68999999999999999999 558999999887765443
No 268
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=4.8e-07 Score=62.78 Aligned_cols=72 Identities=10% Similarity=-0.020 Sum_probs=56.0
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCcc-ccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPL-KLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~-~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
-..||.||++.+ +++.|...|.. .++... .+... +.++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 6 ~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 6 SGIFIGNLDPEI--DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CEEEEECCCTTC--CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 357899999998 88889988854 454444 44432 78899999999999999999 558999998887665433
No 269
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.85 E-value=3.6e-07 Score=63.99 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=54.4
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCc--------cccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKP--------LKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDS 81 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~--------~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~ 81 (222)
+.||.||++.+ +++.|+..|.. .++.. +++... ++++|||||+|.+.++++.| ..+++..+.++.
T Consensus 15 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 15 TIFVQGLGENV--TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp EEEEECCCSSC--CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 67899999998 88899988855 44444 445433 68899999999999999999 468999998876
Q ss_pred CCC
Q 027505 82 QDE 84 (222)
Q Consensus 82 ~~~ 84 (222)
..+
T Consensus 93 l~V 95 (99)
T 2la6_A 93 IKV 95 (99)
T ss_dssp CEE
T ss_pred EEE
Confidence 654
No 270
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=3.8e-07 Score=65.74 Aligned_cols=70 Identities=6% Similarity=-0.041 Sum_probs=56.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 86 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..|...++..+.++.+.+..
T Consensus 29 ~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 29 KLFIGGLSFET--TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp EEEEECCTTCC--CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 67899999998 89899988855 46666666554 6889999999999999999976688888887765543
No 271
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=3.5e-07 Score=64.51 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=56.7
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|+.| ..+++..+.++...+...
T Consensus 15 ~l~V~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 15 TLKVDNLTYRT--SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp EEEEESCCTTC--CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 67899999998 88899988855 45555555443 67899999999999999999 458999999987766443
No 272
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.85 E-value=1e-07 Score=64.40 Aligned_cols=69 Identities=12% Similarity=-0.028 Sum_probs=54.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
..||.||++.+ +++.|...|.. .++....+... +.++|||||+|.+.++|..| ..+++..+.++...+.
T Consensus 3 ~l~V~nlp~~~--t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 3 NLFVGDLNVNV--DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp EEEEECCCTTC--CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 45799999998 88889988855 45455555432 67899999999999999999 5589999988776553
No 273
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=3.1e-07 Score=64.13 Aligned_cols=72 Identities=7% Similarity=-0.026 Sum_probs=55.5
Q ss_pred chhhhhcccceeeecCCCCCCCCCCCC-CCCCcccccc---CCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 12 SSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEK---AQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 12 ~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~---~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
.+-+.||.||++.+ +++.|...|.. .++....+.. .+.++|||||+|.+.++|+.| ..+++..+.++...+.
T Consensus 14 ~~~~l~v~nLp~~~--t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 14 GPTIIKVQNMPFTV--SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp SSEEEEEESCCTTC--CHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34568899999998 88889988865 3433333322 267899999999999999999 5889999988776553
No 274
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.84 E-value=2.8e-07 Score=63.21 Aligned_cols=66 Identities=12% Similarity=-0.015 Sum_probs=53.4
Q ss_pred hhhhcccceeeecCCCCCCCCCCCCCCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
-..||.||++.+ +++.|+..|..-++....+. .++|||||+|.+.++|+.| ..+++..+.++...+
T Consensus 6 ~~l~V~nLp~~~--t~~~l~~~F~~~~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 72 (88)
T 1wg1_A 6 SGILVKNLPQDS--NCQEVHDLLKDYDLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV 72 (88)
T ss_dssp CCEEEESCCSSC--CHHHHHHHTCSSCCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHhhCCeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 457899999998 88899988855455555553 7899999999999999999 568999988876554
No 275
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.83 E-value=3.2e-07 Score=63.88 Aligned_cols=72 Identities=8% Similarity=-0.025 Sum_probs=57.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+....
T Consensus 4 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 4 VVYLGSIPYDQ--TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred EEEEECCCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46799999998 88889988854 45555555543 67899999999999999999 5789999999877665443
No 276
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=4e-07 Score=64.20 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=56.7
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
-+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 16 ~~l~V~nlp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 16 ATIRVTNLSEDT--RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp EEEEEESCCTTC--CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 367899999998 99999999965 45555555433 67899999999999999999 55899999887766543
No 277
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=4.4e-07 Score=62.73 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=54.3
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQD 83 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~ 83 (222)
-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...
T Consensus 17 ~~l~V~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 17 STVYVSNLPFSL--TNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp TSEEEESCCTTS--CHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CEEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 377899999998 88899999865 45555555443 67899999999999999999 57899888876544
No 278
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.81 E-value=4.3e-07 Score=64.01 Aligned_cols=71 Identities=11% Similarity=0.007 Sum_probs=56.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 17 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 17 NLYVKNLDDGI--DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CEEEECCCTTC--CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 67899999998 89999999965 35445554443 67899999999999999999 558999999887766443
No 279
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.80 E-value=3.2e-07 Score=63.60 Aligned_cols=70 Identities=7% Similarity=-0.015 Sum_probs=54.2
Q ss_pred hhhhhcccceeeecCCCCCCCCCCCC-CCCCcccccc---CCCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 13 SLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEK---AQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 13 ~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~---~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
+-+.||.||++.+ +++.|...|.. .++....+.. .+.++|||||+|.+.++|..| ..+++..+.++...+
T Consensus 15 ~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 15 PTVIKVQNMPFTV--SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp CEEEEEECCCTTC--CHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCEEEEeCCCCCC--CHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 3578899999998 88899988865 3433333332 267899999999999999999 458999998876654
No 280
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.80 E-value=1e-06 Score=65.51 Aligned_cols=71 Identities=11% Similarity=0.085 Sum_probs=57.6
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|+.| ..+++..+.++...+...
T Consensus 49 ~l~V~nLp~~~--te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 49 SLKVDNLTYRT--SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp CEEEECCCSSC--HHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 57899999998 88889988855 46666666543 68999999999999999999 568999999987766433
No 281
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.79 E-value=4e-07 Score=63.97 Aligned_cols=69 Identities=6% Similarity=-0.021 Sum_probs=54.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCCCCCCcccccc---CCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEK---AQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~---~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||++.+ +++.|...|... ..+.+.. .+.++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 17 ~l~V~nLp~~~--t~~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 17 TLFVKGLSEDT--TEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SEEEECCCTTC--CHHHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEeCCCCcc--CHHHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 67899999998 899999999742 2333332 267889999999999999999 458999999887665443
No 282
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.78 E-value=6.2e-07 Score=64.79 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=54.6
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
+.||.||++.+ +++.|+..|.. .++..+++... +.++|||||+|.+.+++..+ ..+++..+.++...+
T Consensus 42 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 42 NLFIYHLPQEF--TDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp EEEEECSCTTC--CHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 67899999998 88899998865 34445555433 68899999999999999999 568999998876654
No 283
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=4.7e-07 Score=63.88 Aligned_cols=73 Identities=8% Similarity=-0.059 Sum_probs=58.0
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC--CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCc-ccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT--KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQ-VTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~--~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~-~~~~~~~~~~~ 87 (222)
-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++.. +.++...+...
T Consensus 10 ~~l~V~nLp~~~--t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 10 YSLFVGDLTPDV--DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCEEEECCCTTC--CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 467899999998 89999988853 45555555443 67899999999999999999 5589999 99988777554
Q ss_pred h
Q 027505 88 E 88 (222)
Q Consensus 88 ~ 88 (222)
.
T Consensus 88 ~ 88 (104)
T 2dhg_A 88 I 88 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 284
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.78 E-value=6.8e-07 Score=62.44 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=54.1
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCC-ccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPK-PLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDS 81 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~-~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~ 81 (222)
-+.||.||++.+ +++.|...|.. .++. .+++... +.++|||||+|.+.++|+.| ..+++..+.++.
T Consensus 10 ~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 10 ASLWMGDLEPYM--DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SEEEECSCCTTC--CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 367899999998 99999988854 4555 5555443 67889999999999999999 568999999887
No 285
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=6e-07 Score=62.66 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=54.8
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
-..||.||++.+ +++.|...|.. .++. ..+.. +.++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 20 ~~l~V~nL~~~~--t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 20 ADVYVGNLPRDA--RVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp CEEEEECCCTTC--CHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CEEEEeCCCCcC--cHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 377899999998 88889888854 4433 34444 38899999999999999999 57899999988766543
No 286
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=1.8e-06 Score=62.32 Aligned_cols=68 Identities=9% Similarity=-0.090 Sum_probs=52.3
Q ss_pred hhhcccceee-ecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hcc--CCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAI-TQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASF--DGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~-t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~--~~~~~~~~~~~~~~~ 87 (222)
..||.||++. + +++.|+..|.. .++..+.+. +++|||||+|.+.++|..| ..+ ++..+.++.+.+...
T Consensus 27 ~l~V~NLp~~~~--te~~L~~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 27 VIHLSNLPHSGY--SDSAVLKLAEPYGKIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp EEEEESCCCSSC--CSHHHHTTTTTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred EEEEeCCCCccC--CHHHHHHHHHhcCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 5789999997 8 88889999954 565666553 5689999999999999988 444 455688887766443
No 287
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.77 E-value=5.4e-07 Score=63.98 Aligned_cols=71 Identities=7% Similarity=0.001 Sum_probs=52.6
Q ss_pred hhhhcccceeeecC----CCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhh-hccCCCcccCC-CCCC
Q 027505 14 LCNKLYNLQAITQI----PTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFS-ASFDGFQVTED-SQDE 84 (222)
Q Consensus 14 ~~~~~~nlsf~t~~----~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~-~~~~ 84 (222)
-+.||.||++.+.. +.+.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..++|..+.++ ...+
T Consensus 16 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp SEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 36789999998621 23557777754 45555555533 78999999999999999999 66899999986 5544
No 288
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=5.5e-07 Score=64.53 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=55.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCC--------ccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPK--------PLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDS 81 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~--------~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~ 81 (222)
+.||.||++.+ +++.|...|.. .++. .+++... +.++|||||+|.+.++|..| ..+++..+.++.
T Consensus 17 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 17 AIYVQGLNDSV--TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp EEEEECCCTTC--CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEcCCCCCC--CHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 67899999998 88889888855 3444 2444433 78899999999999999999 458999999887
Q ss_pred CCCcch
Q 027505 82 QDEPET 87 (222)
Q Consensus 82 ~~~~~~ 87 (222)
..+...
T Consensus 95 l~V~~a 100 (113)
T 2cpe_A 95 LKVSLA 100 (113)
T ss_dssp CEEECS
T ss_pred EEEEEC
Confidence 665443
No 289
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.77 E-value=6.9e-07 Score=63.22 Aligned_cols=71 Identities=7% Similarity=-0.062 Sum_probs=56.5
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcc---cCCCCCCc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQV---TEDSQDEP 85 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~---~~~~~~~~ 85 (222)
-..||.||++.+ +++.|+..|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+ .++...+.
T Consensus 14 ~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 14 IKLFIGQIPRNL--DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp EEEEEESCCTTC--CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEE
Confidence 367899999998 88899998854 56666666553 67899999999999999999 56898886 66666553
Q ss_pred c
Q 027505 86 E 86 (222)
Q Consensus 86 ~ 86 (222)
.
T Consensus 92 ~ 92 (106)
T 2dgp_A 92 P 92 (106)
T ss_dssp E
T ss_pred E
Confidence 3
No 290
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.76 E-value=3.6e-07 Score=65.79 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=57.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. .++..+++... +.++|||||+|.+.+++..| ..+++..+.++...+...
T Consensus 27 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 27 NLFIYHLPQEF--GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp CEEEESCCSSC--CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 67899999998 89999998855 46666665543 67889999999999999999 588999999887665433
No 291
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=2.6e-07 Score=65.41 Aligned_cols=71 Identities=10% Similarity=-0.050 Sum_probs=56.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|+.|...++..+.++...+...
T Consensus 18 ~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 18 KLFVGGLDWST--TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp EECCBSCCTTC--CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 67899999998 99999998854 45555555443 67889999999999999999655888898887766544
No 292
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.73 E-value=3.3e-07 Score=65.53 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=57.6
Q ss_pred chhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 12 SSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 12 ~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
.+-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 25 ~~~~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 25 GPMRLYVGSLHFNI--TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SCEEEEEECCCSSC--CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34467899999998 88899988855 45555555433 67899999999999999999 56899999998776543
No 293
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.73 E-value=9.1e-07 Score=64.62 Aligned_cols=71 Identities=8% Similarity=-0.010 Sum_probs=56.7
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCcccccc---CCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEK---AQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~---~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||++.+ +++.|...|.. .++..+.+.. .+.++|||||+|.+.++|..| ..+++..+.++.+.+...
T Consensus 24 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 24 ILFVTGVHEEA--TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 67899999998 88899988854 4545555443 267899999999999999999 468999999988766544
No 294
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.72 E-value=2.3e-06 Score=61.76 Aligned_cols=65 Identities=5% Similarity=-0.052 Sum_probs=52.1
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
-..||.||++.+ +++.|...|.. .++..+.+... |||||+|.+.++|..| ..+++..+.++...+
T Consensus 17 ~~l~V~nLp~~~--t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 17 NRVVVSGLPPSG--SWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp CCEEEEECCSSC--CTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 467899999998 99999999965 45444444333 9999999999999999 569999999987443
No 295
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=5e-07 Score=64.43 Aligned_cols=70 Identities=10% Similarity=0.037 Sum_probs=55.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccC------CCcccCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFD------GFQVTEDSQD 83 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~------~~~~~~~~~~ 83 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..++ +..+.++...
T Consensus 17 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~ 94 (111)
T 1x4h_A 17 TVFIRNLSFDS--EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK 94 (111)
T ss_dssp CEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred EEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence 67899999998 99999999854 45555555543 67899999999999999999 5677 8888887765
Q ss_pred Ccc
Q 027505 84 EPE 86 (222)
Q Consensus 84 ~~~ 86 (222)
+..
T Consensus 95 v~~ 97 (111)
T 1x4h_A 95 VDL 97 (111)
T ss_dssp EEC
T ss_pred EEE
Confidence 543
No 296
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=8.9e-07 Score=62.67 Aligned_cols=71 Identities=10% Similarity=-0.001 Sum_probs=55.6
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCcccccc----CCCCCCcccccccchhhhhhh-hcc-CCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEK----AQNPSALHLSLLSLSYFRQFS-ASF-DGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~----~~~s~gf~fv~~~~~~~a~~a-~~~-~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. .++..+.+.. .+.++|||||+|.+.++|..| ..+ ++..+.++...+...
T Consensus 17 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 17 KILVRNIPFQA--NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp CEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred EEEEeCCCCcC--CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence 67899999998 88899988854 4544444432 367899999999999999999 566 899999887765443
No 297
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.71 E-value=2.4e-07 Score=63.11 Aligned_cols=70 Identities=7% Similarity=0.004 Sum_probs=54.9
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
-+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+.
T Consensus 7 ~~l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 7 FHVFVGDLSPEI--TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp EEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred eEEEEeCCCCCC--CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 367899999998 88899988855 45455555432 67899999999999999999 5589999888766543
No 298
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=3.6e-07 Score=64.73 Aligned_cols=70 Identities=9% Similarity=-0.012 Sum_probs=56.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 25 ~l~V~nlp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 25 ILFVTGVHEEA--TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp EEEEECCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 47899999998 88889988855 45555555543 67899999999999999999 55899999988766543
No 299
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.70 E-value=6.9e-07 Score=62.94 Aligned_cols=73 Identities=8% Similarity=0.003 Sum_probs=57.3
Q ss_pred hhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 13 SLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 13 ~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+-+.||.||++.+ +++.|...|.. .++..+.+... ..++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 15 ~~~l~V~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 15 PKRLHVSNIPFRF--RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCEEEEESCCTTC--CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3477899999998 89899998855 45555555544 45899999999999999999 568999998887665433
No 300
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.70 E-value=2.8e-07 Score=63.90 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=54.8
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhhh-ccCCCcccCCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSA-SFDGFQVTEDSQDE 84 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~-~~~~~~~~~~~~~~ 84 (222)
-+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..|. .+++..+.++...+
T Consensus 17 ~~l~v~nlp~~~--~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 17 RTVFVGNLEARV--REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp GEEEEECCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEECCCCCC--CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 367899999998 88899988855 45555555443 678999999999999999994 58999988876554
No 301
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.70 E-value=4.9e-07 Score=63.87 Aligned_cols=70 Identities=11% Similarity=-0.023 Sum_probs=54.8
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccC---CCCCCc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTE---DSQDEP 85 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~---~~~~~~ 85 (222)
-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.+ +...+.
T Consensus 16 ~~l~v~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 16 RKLFVGMLNKQQ--SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CEEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 467899999998 88889988865 35555555443 67799999999999999999 5689998887 665543
No 302
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=1.4e-06 Score=61.05 Aligned_cols=68 Identities=9% Similarity=-0.009 Sum_probs=55.0
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
-..||.||++.+ +++.|...|.. .++..+++. +++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 28 ~~l~V~nlp~~~--~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 28 TTAYIGNIPHFA--TEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CEEEEESCCTTC--CHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CEEEEcCCCccc--CHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 367899999998 88899988844 555555554 6789999999999999999 57899999888776643
No 303
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.69 E-value=3.1e-07 Score=62.22 Aligned_cols=69 Identities=6% Similarity=-0.017 Sum_probs=54.1
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
-+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+
T Consensus 8 ~~l~V~nl~~~~--~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 8 RVLYVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp SEEEEECCCTTC--CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEECCCCCC--CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 467899999998 88889988855 45455544332 67899999999999999999 578999988766543
No 304
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.69 E-value=3.9e-07 Score=64.02 Aligned_cols=73 Identities=7% Similarity=-0.033 Sum_probs=54.6
Q ss_pred hhhhhcccceeeecCCCCCCCCCCCC-CCCCc--cccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcch
Q 027505 13 SLCNKLYNLQAITQIPTNHLPSLFKT-KSPKP--LKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 13 ~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~--~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 87 (222)
....||.||++.+ +++.|...|.. .+... +.-...+.++|||||+|.+.+++..|..+++..+.++...+...
T Consensus 17 ~~~l~V~nLp~~~--t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 17 PFNLFIGNLNPNK--SVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SEEEEEECCCTTS--CHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCEEEEeCCCCCC--CHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 4477899999998 88889888855 12111 11112268999999999999999999669999999887765433
No 305
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.68 E-value=5.7e-07 Score=65.56 Aligned_cols=70 Identities=9% Similarity=0.009 Sum_probs=57.0
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCcccccc---CCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEK---AQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~---~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 86 (222)
..||.||++.+ +++.|...|.. .++..+.+.. .+.++|||||+|.+.+++..|..+++..+.++...+..
T Consensus 38 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 38 SVYVGNVDYGS--TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp EEEEEEECTTC--CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 67899999998 89999998854 4555555543 37889999999999999999988999999988766543
No 306
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.68 E-value=5e-07 Score=62.33 Aligned_cols=55 Identities=9% Similarity=-0.081 Sum_probs=42.5
Q ss_pred cchhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh
Q 027505 11 SSSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS 69 (222)
Q Consensus 11 ~~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a 69 (222)
..+-..||.||++.+ +++.|+..|.. .++...++.. .++|||||+|.+.++|+.+
T Consensus 9 ~~~~~l~V~~Lp~~~--te~~L~~~F~~~G~i~~v~i~~--~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDM--TAEELQQFFCQYGEVVDVFIPK--PFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp --CCEEEEESCCTTC--CHHHHHHHHTTTSCEEEEECCS--SCCSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHhccCCEEEEEEee--CCCCEEEEEECCHHHHHHH
Confidence 345577899999998 99999999965 4555555544 4899999999999998843
No 307
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=3.3e-07 Score=64.29 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=55.0
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+.
T Consensus 19 ~l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 19 KLFISGLPFSC--TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 67899999998 88889988855 45555555443 67889999999999999999 5789999988766553
No 308
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=3.3e-07 Score=63.96 Aligned_cols=71 Identities=8% Similarity=-0.018 Sum_probs=55.9
Q ss_pred hhhhcccceeeecCCCCCCC----CCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLP----SLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~----~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
-..||.||++.+ +++.|+ ..|.. .++..+++......+|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 10 ~~l~V~nL~~~~--~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 10 ADVQVSNIDYRL--SRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp EEEEEESCCTTS--CHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CEEEEECCCCCC--CHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 367899999998 888888 88854 5556666665523399999999999999999 56999999988765533
No 309
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.67 E-value=5.6e-07 Score=64.18 Aligned_cols=70 Identities=7% Similarity=0.010 Sum_probs=55.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 28 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 28 ILFVTSIHEEA--QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp EEEEESCCTTC--CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 57899999998 88889988855 45555555432 67899999999999999999 55899999887765543
No 310
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=1e-06 Score=61.86 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=53.7
Q ss_pred hhhhcccceeeecCCCCCCCCCCCCCCCCcccccc--CCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEK--AQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~~p~~~~~l~~--~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
-+.||.||++.+ +++.|...|... ..+.+.. .+.++|||||+|.+.++|+.| ..+++..+.++...+..
T Consensus 16 ~~l~V~nLp~~~--t~~~l~~~F~~~--g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 16 KTLVLSNLSYSA--TEETLQEVFEKA--TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SEEEEESCCTTC--CHHHHHHHCSSC--SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhC--CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 367899999998 898999998652 2223222 368899999999999999999 45999999887765543
No 311
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.65 E-value=8.3e-07 Score=68.32 Aligned_cols=74 Identities=16% Similarity=0.010 Sum_probs=57.5
Q ss_pred cchhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccC--CCCCCcc
Q 027505 11 SSSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTE--DSQDEPE 86 (222)
Q Consensus 11 ~~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~--~~~~~~~ 86 (222)
+..+..+|.||+|.+ +++.|+..|.. ..+..+.+... .++|||||+|.+.++|..| ..++|..+.+ +.+.+..
T Consensus 44 s~vl~l~VgNL~~~v--ted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPV--TLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCC--CHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCC--CHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 455678899999998 89999999954 55555555433 5789999999999999999 7799999965 5555443
Q ss_pred h
Q 027505 87 T 87 (222)
Q Consensus 87 ~ 87 (222)
.
T Consensus 121 A 121 (164)
T 1sjr_A 121 S 121 (164)
T ss_dssp C
T ss_pred e
Confidence 3
No 312
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.64 E-value=1.5e-06 Score=63.32 Aligned_cols=69 Identities=10% Similarity=0.005 Sum_probs=56.0
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+.
T Consensus 37 ~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 37 KLLVSNLDFGV--SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp EEEEESCCSSC--CHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 67899999998 88889988854 46666665543 67899999999999999999 5589999988766553
No 313
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=7.2e-07 Score=63.43 Aligned_cols=72 Identities=4% Similarity=-0.088 Sum_probs=54.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CC-CCccccc-cC---CCCCCcccccccchhhhhhh-hccC--CCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KS-PKPLKLE-KA---QNPSALHLSLLSLSYFRQFS-ASFD--GFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p-~~~~~l~-~~---~~s~gf~fv~~~~~~~a~~a-~~~~--~~~~~~~~~~~~ 85 (222)
..||.||++.+ +++.|...|.. .+ +..+.+. .. +.++|||||+|.+.++|..| ..++ +..+.++...+.
T Consensus 10 ~l~V~nLp~~~--t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 10 RLFIGGIPKMK--KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp EEEEECCCTTS--CHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred EEEEeCCCCcC--CHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 57899999997 88899988854 33 4555554 22 58899999999999999999 5565 588888877665
Q ss_pred chh
Q 027505 86 ETE 88 (222)
Q Consensus 86 ~~~ 88 (222)
...
T Consensus 88 ~a~ 90 (109)
T 2dis_A 88 WAE 90 (109)
T ss_dssp ESC
T ss_pred EcC
Confidence 443
No 314
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=7e-07 Score=63.77 Aligned_cols=68 Identities=7% Similarity=-0.103 Sum_probs=52.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhhhc-cC--CCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSAS-FD--GFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~-~~--~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|+..|.. ..+..+.+.. .+|||||+|.+.++|..|.. ++ +..+.++.+.+...
T Consensus 18 ~LfV~nLp~~v--te~dL~~lF~~fG~V~~v~i~~---~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 18 VIHIRKLPIDV--TEGEVISLGLPFGKVTNLLMLK---GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp EEEECSCCTTS--CHHHHHHHHHHHCCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 56899999998 99999999854 5555555443 48999999999999999843 44 46788887766544
No 315
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.62 E-value=1.1e-06 Score=63.18 Aligned_cols=70 Identities=11% Similarity=0.038 Sum_probs=54.7
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCC----CccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSP----KPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~----~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||++.+ +++.|...|.. .++ ...++. .+.++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 27 ~l~V~nLp~~~--t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 27 VLYLKNLSPRV--TERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp EEEEECCCTTC--CHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 67899999998 88899988854 222 233333 468999999999999999999 568999999887766443
No 316
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=4.6e-07 Score=63.86 Aligned_cols=72 Identities=10% Similarity=-0.033 Sum_probs=56.9
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC-CCCCCcccccccchhhhhhhh-ccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA-QNPSALHLSLLSLSYFRQFSA-SFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~-~~s~gf~fv~~~~~~~a~~a~-~~~~~~~~~~~~~~~~~ 87 (222)
-..||.||++.+ +++.|...|.. .++..+.+... ..++|||||+|.+.++|..|. .+++..+.++...+...
T Consensus 16 ~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 16 RTLYVGNLSRDV--TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CEEEEESCCTTC--CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CEEEEeCCCccC--CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 367899999998 88899998854 45555665554 457899999999999999994 58999998877665443
No 317
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=4.6e-07 Score=62.69 Aligned_cols=69 Identities=9% Similarity=0.131 Sum_probs=54.3
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
-+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|+.| ..+++..+.++...+
T Consensus 16 ~~l~v~nlp~~~--t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 16 CCLGVFGLSLYT--TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp GCEEEESCCSSC--CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CEEEEECCCCCC--CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 367899999998 88889988854 45555555443 67899999999999999999 558998888766544
No 318
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.61 E-value=0.00034 Score=48.30 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=58.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCC--cccEEEEEECCHHHHHHHHHHhCCCeecCCc
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSVSADGI 183 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~--~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr 183 (222)
.+|-|++||+..|++++.+.++.+..+.....+..+.+.+ .-.-|||.|.+.+++..-.+.++|..+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 4789999999999999999999988877666655443332 3456899999999999999999999886554
No 319
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=4.7e-07 Score=63.18 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=55.6
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC----C--CCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA----Q--NPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~----~--~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
..||.||++.+ +++.|...|.. .++..+.+... + .++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 7 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 7 GLFIKNLNFST--TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 56899999998 99999998854 45555555542 2 6789999999999999999 55899999988766544
Q ss_pred h
Q 027505 87 T 87 (222)
Q Consensus 87 ~ 87 (222)
.
T Consensus 85 a 85 (98)
T 2cpf_A 85 S 85 (98)
T ss_dssp S
T ss_pred c
Confidence 3
No 320
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.60 E-value=3.4e-07 Score=65.87 Aligned_cols=71 Identities=7% Similarity=-0.016 Sum_probs=56.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|+.| ..+++..+.++.+.+...
T Consensus 17 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 17 HVFVGDLSPEI--TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp EEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 67899999998 88899998865 45555555432 67899999999999999999 568999999887766444
No 321
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.60 E-value=6.3e-07 Score=63.53 Aligned_cols=69 Identities=9% Similarity=-0.029 Sum_probs=54.4
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...+
T Consensus 30 ~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 30 GKLLVSNLDFGV--SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp EEEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 367899999998 88889888854 45555555433 67899999999999999999 558999988866544
No 322
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.60 E-value=3.4e-07 Score=63.70 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=55.1
Q ss_pred hhhcccceeeecCCCCCCC----CCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 15 CNKLYNLQAITQIPTNHLP----SLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~----~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
..||.||++.+ +++.|. ..|.. .++..+.+...+.++|||||+|.+.++|..| ..+++..+.++...+....
T Consensus 10 ~l~V~nLp~~~--~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 10 TIYINNLNEKI--KKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp EEEEESCCTTS--CHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 56799999997 888777 77744 4544555544467889999999999999999 5689999988776654443
No 323
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00017 Score=50.89 Aligned_cols=77 Identities=6% Similarity=-0.006 Sum_probs=63.5
Q ss_pred CCCEEEEcCCCCCC-C----HHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 111 EAARLYVGNLPYSM-T----SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 111 ~~~~ifV~nLp~~~-t----~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
-.++|+|.||+.++ . .+.++++|.+|+++......+.- .-..|.|.+.++|.+|-..|++..+ .|+.|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f-~g~~~ 76 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEF-LGKEM 76 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEE-TTEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhcccee-cCcee
Confidence 45789999998876 2 25778999999998887665543 2458999999999999999999999 89999
Q ss_pred EEEEeccCC
Q 027505 186 AIVLIEPFN 194 (222)
Q Consensus 186 ~v~~a~~~~ 194 (222)
+|-++++..
T Consensus 77 r~YFgq~~~ 85 (104)
T 1wey_A 77 KLYFAQTLH 85 (104)
T ss_dssp EEECCCCSS
T ss_pred EEEecCCCC
Confidence 999988643
No 324
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.60 E-value=4.6e-07 Score=61.72 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=54.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC----CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA----QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~----~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
..||.||++.+ +++.|...|.. .++....+... +.++|||||+|.+.++|..| ..+++..+.++...+.
T Consensus 6 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 6 KVHIGRLTRNV--TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp EEEEECCCTTC--CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 56899999998 88899988854 45555555443 23899999999999999999 5589999998776553
No 325
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=2e-06 Score=61.89 Aligned_cols=70 Identities=6% Similarity=-0.084 Sum_probs=54.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|+.| ..+++ .+.++.+.+...
T Consensus 19 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 19 KIFVGGLPYHT--TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp EEEEECCCSSC--CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 67899999998 88899998854 45555555543 67899999999999999999 55565 788877665443
No 326
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.59 E-value=1.8e-06 Score=61.90 Aligned_cols=67 Identities=10% Similarity=-0.116 Sum_probs=53.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
..||.||++.+ +++.|+..|.. .++..+.+. .++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 12 ~l~V~nLp~~~--te~~L~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 12 VILAKNLPAGT--LAAEIQETFSRFGSLGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHTTSCEEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 56799999998 88899999954 454444433 5789999999999999999 67899999998776543
No 327
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=4.7e-06 Score=59.92 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=44.5
Q ss_pred chhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC------CCCCCcccccccchhhhhhh-hcc
Q 027505 12 SSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA------QNPSALHLSLLSLSYFRQFS-ASF 72 (222)
Q Consensus 12 ~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~------~~s~gf~fv~~~~~~~a~~a-~~~ 72 (222)
..-..||.||++.+ +++.|...|.. .++. ..+... ++++|||||+|.+.++|+.| ..+
T Consensus 7 ~~~~lfVgnLp~~~--te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDI--DEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTC--CHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCC--CHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 34467899999998 99999999965 4544 333332 48899999999999999988 444
No 328
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00085 Score=47.10 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=58.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHc-----cCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAE-----AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICI 185 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~-----~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i 185 (222)
...+|.|.|||.++.++.|+-+|+. -|+|..+.... +-|+|+|.+...|++.++. ....+ .+.+|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L-~~~~L 76 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHEL-HGAQL 76 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBS-SSSBC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-Cccee-cCeEE
Confidence 4678999999999999999999986 25788876532 5789999999999999883 24455 78888
Q ss_pred EEEEeccCC
Q 027505 186 AIVLIEPFN 194 (222)
Q Consensus 186 ~v~~a~~~~ 194 (222)
.|....++.
T Consensus 77 sV~P~~~~~ 85 (104)
T 2dhx_A 77 SLRPAPPRA 85 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEcCCCCC
Confidence 887665544
No 329
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.56 E-value=1.4e-06 Score=64.51 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=54.5
Q ss_pred hcccchhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCc-ccccccchhhhhhh-hccCCCcccC
Q 027505 8 MAASSSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSAL-HLSLLSLSYFRQFS-ASFDGFQVTE 79 (222)
Q Consensus 8 ~~~~~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf-~fv~~~~~~~a~~a-~~~~~~~~~~ 79 (222)
...+..|..+|.||+|.+ +++.|+..|.. .+...+.+.. +++|| |||+|.+.++|..| ..++|..+.+
T Consensus 23 ~~ps~VL~I~V~NL~~~v--te~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPV--TLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp --CCSEEEEEEESCCSCC--CHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred CCCCceEEEEECCCCCCC--CHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 334677889999999998 99999999955 5555554443 45788 99999999999999 8899999987
No 330
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.56 E-value=1.1e-06 Score=65.09 Aligned_cols=68 Identities=6% Similarity=-0.008 Sum_probs=53.9
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQD 83 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~ 83 (222)
-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++...
T Consensus 64 ~~l~v~nlp~~~--~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 64 RVLYVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CEEEEECCCTTC--CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred cEEEEEeCCCCC--CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 367899999998 88889988855 45555555443 68899999999999999999 47898888876543
No 331
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.56 E-value=5e-06 Score=64.73 Aligned_cols=71 Identities=10% Similarity=-0.008 Sum_probs=57.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++.+.+...
T Consensus 90 ~l~V~nLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 90 KLLVSNLDFGV--SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp EEEEECCCSCC--CHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 67899999998 88889988854 46666666554 68899999999999999999 559999999987766443
No 332
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=7.9e-07 Score=63.74 Aligned_cols=71 Identities=10% Similarity=0.009 Sum_probs=56.0
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++.+.+...
T Consensus 17 ~l~V~nlp~~~--~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 17 TVFVANLDYKV--GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 67899999998 88899988855 35444444433 67889999999999999999 558999999887766443
No 333
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.55 E-value=4.3e-06 Score=74.12 Aligned_cols=72 Identities=10% Similarity=-0.010 Sum_probs=59.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.+..+.+....
T Consensus 104 ~lfV~nL~~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 104 TLFVARVNYDT--TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 68999999998 99999999954 56666666543 78899999999999999999 5889999999887665443
No 334
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=3.6e-06 Score=58.74 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=54.3
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
..||.||++.+ +++.|...|.. .++..+.+. +++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 17 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~~~---~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 17 RLFVGNLPPDI--TEEEMRKLFEKYGKAGEVFIH---KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp EEEEESCCTTC--CHHHHHHHTSTTCCCSEEEEE---TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHhhcCCeEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 67899999998 88899999965 455555544 4589999999999999999 58899999987766543
No 335
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.53 E-value=1.9e-06 Score=59.10 Aligned_cols=70 Identities=9% Similarity=0.025 Sum_probs=54.8
Q ss_pred cchhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 11 SSSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 11 ~~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
+..-..||.||++.+ +++.|...|.. .++..+.+. +|||||+|.+.++|+.| ..+++..+.++...+...
T Consensus 6 ~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREA--TEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSC--CHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 334467899999998 88889988854 454444443 79999999999999999 578999999887766443
No 336
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.52 E-value=8.4e-07 Score=60.32 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=50.8
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-----C-------CCCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-----K-------SPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDS 81 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-----~-------p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~ 81 (222)
-..||.||++.+ +++.|...|.. . ++....+ .+++|||||+|.+.++|..|..+++..+.++.
T Consensus 7 ~~l~V~nLp~~~--t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~---~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 7 RRLYVGNIPFGI--TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp GEEEEESCCTTC--CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE---CSSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHHHhhhcccccCCCCcceEEEe---cCCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 356899999998 88889888853 2 2222222 35699999999999999999999999998876
Q ss_pred CCC
Q 027505 82 QDE 84 (222)
Q Consensus 82 ~~~ 84 (222)
..+
T Consensus 82 l~V 84 (87)
T 2hzc_A 82 LKI 84 (87)
T ss_dssp CEE
T ss_pred EEE
Confidence 543
No 337
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.52 E-value=4.5e-07 Score=63.02 Aligned_cols=67 Identities=9% Similarity=0.008 Sum_probs=52.5
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
-+.||.||++.+ +++.|...|.. .++..+ ...+.++|||||+|.+.++|..| ..+++..+.++...+
T Consensus 17 ~~l~V~nL~~~~--t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 17 RTLLAKNLSFNI--TEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp GEEEEESCCSSC--CHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 467899999998 88889988865 232222 23368899999999999999999 558998888876554
No 338
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.51 E-value=1.5e-06 Score=68.63 Aligned_cols=69 Identities=3% Similarity=-0.059 Sum_probs=55.1
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~ 85 (222)
+.||.||++.+ +.+.|...|.. .++..+.+... +.++|||||+|.+.++|..|....+..+.++...+.
T Consensus 111 ~l~V~nLp~~~--t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~ 182 (193)
T 2voo_A 111 SVYIKGFPTDA--TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 182 (193)
T ss_dssp EEEEECCCTTC--CHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEE
T ss_pred EEEecCCCCcC--CHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 57899999998 88899999855 45555555443 678999999999999999997776778888776553
No 339
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=2.6e-06 Score=62.18 Aligned_cols=68 Identities=7% Similarity=-0.119 Sum_probs=52.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccC--CCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFD--GFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~--~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|+..|.. ..+..+.+.. .+|||||+|.+.++|..| ..++ +..+.++.+.+...
T Consensus 33 ~LfVgNLp~~v--te~dL~~lF~~fG~V~~v~i~~---~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 33 VIHIRKLPIDV--TEGEVISLGLPFGKVTNLLMLK---GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp EEEEESCCTTC--CHHHHHHHHTTTSCCCEEEEEG---GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 56899999998 89999999854 5656665544 389999999999999998 4444 46788887766443
No 340
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=4.2e-06 Score=59.93 Aligned_cols=67 Identities=9% Similarity=0.077 Sum_probs=53.2
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhh-hccCCCcccCCCC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQ 82 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~ 82 (222)
-..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+++...
T Consensus 26 ~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 26 TNLYISNLPLSM--DEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp TEEEEESCCTTC--CHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 367899999998 88899999965 35555555443 67899999999999999999 5689999876543
No 341
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=1.8e-06 Score=61.32 Aligned_cols=68 Identities=9% Similarity=-0.063 Sum_probs=50.8
Q ss_pred hhhccccee-eecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCC--CcccCCCCCCcch
Q 027505 15 CNKLYNLQA-ITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDG--FQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf-~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~--~~~~~~~~~~~~~ 87 (222)
..||.||++ .+ +++.|+..|.. ..+..+.+. +.+|||||+|.+.++|..| ..+++ ..+.++.+.+...
T Consensus 17 ~l~V~nLp~~~~--te~dL~~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 17 VVHIMDFQRGKN--LRYQLLQLVEPFGVISNHLIL---NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp EEEEESCCCSSS--HHHHHHTTTGGGSCEEEEEEC---SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred EEEEeCCCCCcC--CHHHHHHHHHhcCCEEEEEEE---cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 568999999 87 88889999954 455555543 3479999999999999988 55554 4478877766444
No 342
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.48 E-value=1.2e-06 Score=61.63 Aligned_cols=67 Identities=9% Similarity=-0.034 Sum_probs=52.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC--CCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA--QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~--~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|+.|.. ++..+.++...+
T Consensus 11 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 11 TVFVGGIDVRM--DETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp EEEEECCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 67899999998 88899988855 45445554443 6789999999999999999977 777787776654
No 343
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.48 E-value=8e-07 Score=62.58 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=51.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
..||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..|.. +++.+.++...+
T Consensus 17 ~l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v 87 (103)
T 2cqg_A 17 DLIVLGLPWKT--TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDC 87 (103)
T ss_dssp CEEEESCCSSC--CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEE
T ss_pred EEEEEcCCCcC--CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEE
Confidence 57899999998 88899988855 45555555443 6889999999999999999966 366677765544
No 344
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=3.7e-06 Score=58.49 Aligned_cols=67 Identities=7% Similarity=-0.110 Sum_probs=54.1
Q ss_pred hhhccccee-eecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 15 CNKLYNLQA-ITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~nlsf-~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
..||.||++ .+ +++.|...|.. .++..+.+ ++|||||+|.+.++|..| ..+++..+.++...+....
T Consensus 12 ~l~V~nlp~~~~--t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 12 RLFIGNLPLKNV--SKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp EEEEESSTTSCC--CHHHHHHHHTTTCCCCEEEE-----ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred EEEEeCCCcccC--CHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 567999999 87 88889988855 45555555 489999999999999999 5589999999887765443
No 345
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.47 E-value=8.5e-07 Score=62.75 Aligned_cols=65 Identities=6% Similarity=-0.159 Sum_probs=48.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCc--ccCCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQ--VTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~--~~~~~~~~ 84 (222)
..||.||++.+ +++.|...|.. .++..+.+. +++|||||+|.+.++|..| ..+++.. +.++...+
T Consensus 23 ~l~V~NLp~~~--te~~L~~lF~~fG~V~~v~i~---~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 23 VVHIRGLIDGV--VEADLVEALQEFGPISYVVVM---PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp EEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHhccCCEEEEEEE---cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 46799999998 99999999854 454444443 4689999999999999988 5666654 55665544
No 346
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=3.4e-06 Score=58.68 Aligned_cols=66 Identities=14% Similarity=0.032 Sum_probs=51.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCccc--CCCCCCc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVT--EDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~--~~~~~~~ 85 (222)
..||.||++.+ +++.|...|.. .++..+.+. ..+|||||+|.+.++|..| ..+++..+. ++...+.
T Consensus 19 ~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 19 RLWVGGLGPNT--SLAALAREFDRFGSIRTIDHV---KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CEEEECCCSSC--CHHHHHHHHHTTSCEEEEEEC---SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEe---CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 67899999998 88899988854 444444443 3389999999999999999 558999998 6665543
No 347
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.46 E-value=1.6e-06 Score=63.95 Aligned_cols=71 Identities=8% Similarity=-0.099 Sum_probs=55.1
Q ss_pred hhhhcccc----eeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccc----hhh----hhhh-h--ccCC
Q 027505 14 LCNKLYNL----QAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSL----SYF----RQFS-A--SFDG 74 (222)
Q Consensus 14 ~~~~~~nl----sf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~----~~~----a~~a-~--~~~~ 74 (222)
...+|.|| +|.| ++..|+.+|.. .++...++..+ ++|+|||||.|.+ +.. |..| . .+++
T Consensus 3 ~kI~VgnL~~~~~~~t--te~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNI--QDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCC--CHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 45789999 9999 99999999955 67777777766 8999999999996 333 4555 4 6799
Q ss_pred CcccCCCCCCcc
Q 027505 75 FQVTEDSQDEPE 86 (222)
Q Consensus 75 ~~~~~~~~~~~~ 86 (222)
..++++...+.-
T Consensus 81 ~~I~Gr~irV~l 92 (136)
T 2j8a_A 81 CFIMGFKFEVIL 92 (136)
T ss_dssp EEETTEEEEEEE
T ss_pred CeecCcEEEEEE
Confidence 999998776643
No 348
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.45 E-value=2.8e-06 Score=60.64 Aligned_cols=66 Identities=8% Similarity=0.009 Sum_probs=53.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. .++..+.+. +|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 33 ~l~V~nLp~~~--t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 33 RLFVRPFPLDV--QESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp EEEECSSCTTC--CHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred EEEEECCCCCC--CHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 67899999998 88889988855 465666554 89999999999999999 568999998877655433
No 349
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.44 E-value=1.5e-06 Score=65.91 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=57.6
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
-+.||.||++.+ +++.|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++.+.+...
T Consensus 40 ~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 40 CTLYVGNLSFYT--TEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp CEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 367899999998 88899999965 45555555443 56889999999999999999 558999999887766444
No 350
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.43 E-value=1.4e-06 Score=62.00 Aligned_cols=60 Identities=5% Similarity=-0.069 Sum_probs=48.9
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccC
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTE 79 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~ 79 (222)
-..||.||++.+ +++.|...|.. .++..+.+... |||||+|.+.++|+.| ..+++..+.+
T Consensus 16 ~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 16 NRVVVSGLPPSG--SWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CEEEEESCCSSC--CHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 467899999998 99999999955 45455544433 9999999999999999 5689999988
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=4.2e-06 Score=57.08 Aligned_cols=51 Identities=10% Similarity=-0.035 Sum_probs=41.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS 69 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a 69 (222)
..||.||++.+ +++.|...|.. .++..+.+.. .++|||||+|.+.++|+.+
T Consensus 7 ~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~--~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 7 GVFVGRCTGDM--TEDELREFFSQYGDVMDVFIPK--PFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEEEESCCSSS--CHHHHHHHSTTTSCCCEEECCS--SCCSCCEEECSCHHHHHHT
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHcCCeeEEEEec--CCCCEEEEEECCHHHHHHH
Confidence 56899999998 99999999965 4656665543 4899999999999999765
No 352
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=1.8e-06 Score=59.58 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=52.4
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CC-CCccccccCCCCCCcccccccchhhhhhh-hccCC-CcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KS-PKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDG-FQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p-~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~-~~~~~~~~~~~~~ 87 (222)
-..||.||++.+ +++.|...|.. .+ .....+ .++|||||+|.+.++|..| ..+++ ..+.++...+...
T Consensus 9 ~~l~V~nLp~~~--t~~~l~~~F~~~G~vv~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 9 NKLYIGNLSPAV--TADDLRQLFGDRKLPLAGQVL----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCEEEECCCTTC--CHHHHHHHHHHTTCCCSSCEE----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHHcCCceEEEEE----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 367899999998 88889988844 33 333333 4689999999999999999 56899 8898877665443
No 353
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.38 E-value=3.2e-06 Score=60.25 Aligned_cols=66 Identities=9% Similarity=0.028 Sum_probs=54.2
Q ss_pred hhhcccceee-ecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAI-TQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~-t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++. + +++.|...|.. .++..+.+ ++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 29 ~l~V~nl~~~~~--t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 29 RVFIGNLNTALV--KKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp EEEECSCCCSSC--CHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred EEEEeCCCcccC--CHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 6789999999 7 88889988855 45555555 689999999999999999 588999999887766443
No 354
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.36 E-value=5.1e-06 Score=58.74 Aligned_cols=68 Identities=4% Similarity=-0.123 Sum_probs=50.1
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhhh-cc--CCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSA-SF--DGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~-~~--~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. ..+..+.+. +.+|||||+|.+.++|..|. .+ ++..+.++...+...
T Consensus 17 ~l~V~nLp~~~--te~~L~~~F~~fG~v~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 17 VLHIRKLPGEV--TETEVIALGLPFGKVTNILML---KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp EEEEESCCTTC--CHHHHHHTTTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEE---CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 57899999998 88899999954 444444333 34899999999999999883 33 566677776655433
No 355
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=7.5e-06 Score=56.57 Aligned_cols=69 Identities=6% Similarity=-0.040 Sum_probs=52.5
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 86 (222)
-..||.||++.+ +++.|...|.. .++..+... ....+ ||||+|.+.++++.|..+++..+.++...+..
T Consensus 9 ~~l~V~nl~~~~--t~~~l~~~F~~~G~v~~v~~~-~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 9 RSVFVSGFPRGV--DSAQLSEYFLAFGPVASVVMD-KDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 78 (94)
T ss_dssp CEEEEECCCTTC--CHHHHHHHGGGTSCEEEEEEC-SSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBC
T ss_pred CEEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEc-CCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEE
Confidence 367899999998 99999999965 343433111 11223 99999999999999966999999998887753
No 356
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.35 E-value=1.7e-06 Score=66.36 Aligned_cols=72 Identities=7% Similarity=-0.010 Sum_probs=57.6
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
+.||.||++.+ ++..|...|.. .++..+.+... +.++|||||+|.+.++|..| ..+++..+.++.+.+....
T Consensus 74 ~l~V~nLp~~~--t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 74 ILFVTSIHEEA--QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp EEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred EEEEeCCCCCC--CHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 57899999998 88899988855 45555555543 67899999999999999999 5689999998877665443
No 357
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.35 E-value=3e-06 Score=60.26 Aligned_cols=68 Identities=4% Similarity=-0.181 Sum_probs=50.5
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhhh-ccCC--CcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSA-SFDG--FQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~-~~~~--~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|+..|.. ..+..+.+. +.+|||||+|.+.++|..|. .+++ ..+.++...+...
T Consensus 17 ~l~V~nLp~~~--te~~L~~~F~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 17 VVHVRGLCESV--VEADLVEALEKFGTICYVMMM---PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp EEEEESCCSSC--CHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEE---CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 67899999998 88899998854 444444433 35899999999999999984 4544 4477877765444
No 358
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.32 E-value=1.2e-06 Score=65.15 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=56.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccC---CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKA---QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~---~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. .++..+++... +.++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 44 ~l~V~nLp~~~--~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 44 NLMVNYIPTTV--DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp EEEEESCSTTC--CHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 67899999998 88889988854 45555555443 56799999999999999999 558999999887665443
No 359
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.26 E-value=9.1e-06 Score=59.66 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=51.7
Q ss_pred cchhhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCc-ccccccchhhhhhh-hccCCCcccCC
Q 027505 11 SSSLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSAL-HLSLLSLSYFRQFS-ASFDGFQVTED 80 (222)
Q Consensus 11 ~~~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf-~fv~~~~~~~a~~a-~~~~~~~~~~~ 80 (222)
+..|..+|.||+|.+ +++.|...|.. ..+..+.+.. + .|| |||+|.+.++|..| ..++|..+.+.
T Consensus 23 s~vl~l~V~NL~~~v--t~~~L~~~Fs~yG~V~~v~i~~--~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~ 90 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPI--TVDVLYTVCNPVGKVQRIVIFK--R-NGIQAMVEFESVLCAQKAKAALNGADIYAG 90 (124)
T ss_dssp CSEEEEEEESCCSCC--CHHHHHHHHTTTSCEEEEEEEE--S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTT
T ss_pred CcEEEEEEcCcCCCC--CHHHHHHHHHhcCCEEEEEEEe--C-CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 455677899999998 88999999965 4555555533 2 397 99999999999998 78999999873
No 360
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.23 E-value=4.5e-06 Score=58.29 Aligned_cols=63 Identities=8% Similarity=-0.111 Sum_probs=50.1
Q ss_pred hhhccccee-eecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 15 CNKLYNLQA-ITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf-~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
..||.||++ .+ +++.|...|.. .++..+.+ ++|||||+|.+.++|..| ..+++..+.++...+
T Consensus 24 ~l~V~nLp~~~~--t~~~L~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 24 RLFIGNLPLKNV--SKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp EEEEESCCSSCC--CHHHHHHHHGGGSCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred EEEEeCCCcccC--CHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 678999999 87 88889888855 44444444 489999999999999999 558999888876554
No 361
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.20 E-value=5.6e-06 Score=55.92 Aligned_cols=65 Identities=6% Similarity=0.002 Sum_probs=50.4
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hcc-CCCcccCCCCCC
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASF-DGFQVTEDSQDE 84 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~-~~~~~~~~~~~~ 84 (222)
+.||.||++.+ +++.|...|.. .++..+.+. +++|||||+|.+.++|..| ..+ ++..+.++...+
T Consensus 14 ~l~V~~l~~~~--t~~~l~~~f~~~G~i~~~~~~---~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 14 TLYVGGLGDTI--TETDLRNHFYQFGEIRTITVV---QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CEEEECCTTTS--CHHHHHHHHHTTSCEEEEEEE---GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred EEEEcCCCCCC--CHHHHHHHHHhCCCEeEEEEE---CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 67899999997 88889988854 444444443 3589999999999999999 446 888888866544
No 362
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=4.3e-06 Score=59.47 Aligned_cols=67 Identities=6% Similarity=-0.056 Sum_probs=52.9
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
..||.||++.+ +++.|...|.. .++..+.+... +|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 27 ~l~V~nl~~~~--t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 27 TVYCGGIASGL--TDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp EEEEECCSSCC--CHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 67899999998 88889988854 45444444433 89999999999999999 58899999887765543
No 363
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.11 E-value=9e-06 Score=55.88 Aligned_cols=66 Identities=6% Similarity=-0.022 Sum_probs=52.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. .++..+.+. ++||||+|.+.++|..| ..+++..+.++...+...
T Consensus 12 ~l~V~nLp~~~--t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 12 KLHVGNISPTC--TNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp EEEEESCCSSC--CHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 67899999998 99999999854 455555443 56999999999999999 578999998876655433
No 364
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.11 E-value=1.2e-05 Score=58.12 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=45.2
Q ss_pred hhhc--ccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcc
Q 027505 15 CNKL--YNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQV 77 (222)
Q Consensus 15 ~~~~--~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~ 77 (222)
..|| .||++.+ +++.|+..|.. ..+..+.+. ..+|||||+|.+.++|..| ..++|.++
T Consensus 27 ~L~V~Ng~L~~~~--te~~L~~~F~~fG~v~~v~i~---~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 27 SLVVANGGLGNGV--SRNQLLPVLEKCGLVDALLMP---PNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp EEEEETCTGGGTC--CHHHHHHHHHHHSCEEEEECC---TTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred EEEEECCCCCCCC--CHHHHHHHHHhcCCeEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578 5599998 88999999954 444444332 4589999999999999999 77899876
No 365
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.04 E-value=0.0028 Score=43.97 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=47.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC
Q 027505 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (222)
Q Consensus 109 ~~~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~ 175 (222)
....+.+++ +.|.++...||.++|+.||. ..|+.+-|- -|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 344566777 99999999999999999994 345555553 89999999999999999664
No 366
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.98 E-value=8.4e-06 Score=56.85 Aligned_cols=66 Identities=9% Similarity=-0.016 Sum_probs=50.7
Q ss_pred hhhhcccceeeecCCCCCCCCCCCCC---CCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKTK---SPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~~---p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
-+.||.||++.+ +++.|...|..- .+..+ ..++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 16 ~~l~V~nLp~~~--t~~~l~~~F~~~g~g~v~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 16 KILYVRNLMLST--SEEMIEKEFNNIKPGAVERV-----KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CEEEEESCCTTC--CHHHHHHHHHTTSTTCEEEE-----EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCcceEEE-----EEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 367899999998 888899888542 22222 24589999999999999999 55999999887665533
No 367
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.98 E-value=7e-06 Score=56.21 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=52.0
Q ss_pred hhhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 14 LCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 14 ~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
-+.||.||++.+ +++.|...|.. .++..+.+. ++||||+|.+.++|+.| ..+++..+.++...+...
T Consensus 10 ~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 10 WKIFVGNVSAAC--TSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCEEEESCCTTC--CHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 367899999998 88899988854 444444433 56999999999999999 568999998887665433
No 368
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.97 E-value=4.9e-06 Score=58.54 Aligned_cols=66 Identities=9% Similarity=-0.016 Sum_probs=51.8
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.||++.+ +++.|...|.. .++..+.+ .+|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 13 ~l~V~nl~~~~--t~~~l~~~F~~~G~i~~v~~-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 13 VLFVRNLANTV--TEEILEKAFSQFGKLERVKK-----LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CEEEECCCTTC--CHHHHHHHHHHHSCEEEEEE-----CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEE-----ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 67899999998 88899998854 44444433 378999999999999999 558999998887665443
No 369
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.94 E-value=0.0017 Score=45.23 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=51.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCC--cccEEEEEECCHHHHHHHHHHhCCCeecCCc
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSVSADGI 183 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~--~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr 183 (222)
.-+|.|+.||+..|++++.+.++..-++.....+..+.+.+ .-.-|||.|.+.+++..-.+.++|..+.+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~k 82 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSK 82 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCC
Confidence 45799999999999999887777654433222222111211 2345899999999999999999999886554
No 370
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=1.5e-05 Score=55.07 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=54.4
Q ss_pred hhhhhcccceeeecCCCCCCCCCCCC-CCCCccc-cccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 13 SLCNKLYNLQAITQIPTNHLPSLFKT-KSPKPLK-LEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 13 ~~~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~-l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
.-..||.||++.+ +++.|...|.. .++...+ +... ...|.|||+|.+.+++..| ..+++..+.++...+..
T Consensus 15 ~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~~~~i~~~-~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 15 IRKLQIRNIPPHL--QWEVLDSLLVQYGVVESCEQVNTD-SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CCCEEEEEECSSS--CHHHHHHHHHHHSCEEEEEEECCS-SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCEEEEEcCCCCC--CHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999998 88899998854 4555552 4444 3445599999999999999 56999999998776543
No 371
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.74 E-value=3.6e-05 Score=53.57 Aligned_cols=64 Identities=13% Similarity=-0.019 Sum_probs=47.9
Q ss_pred hhcccceeeecCCCCC----CCCCCCC-C-CCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 16 NKLYNLQAITQIPTNH----LPSLFKT-K-SPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 16 ~~~~nlsf~t~~~~~~----l~~~f~~-~-p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
.+|.||+|.. +.+. |...|.. . ++..+ ..|||||.|.+.++|+.| ..++|.++.++++.+....
T Consensus 12 lYV~NL~~~~--~~~~lk~~L~~lF~~yGG~Vl~V-------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 12 LYVYNLPANK--DGKSVSNRLRRLSDNCGGKVLSI-------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp EEEESCCTTS--CHHHHHHHHHHHHHTTTCCEEEC-------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred EEEeCCCCcC--CHHHHHHHHHHHHHHcCCeeEEE-------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 4699999997 6555 4466632 2 43332 239999999999999999 7899999999988775543
No 372
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.73 E-value=6.7e-05 Score=54.53 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=51.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
..||.|| .+ +++.|...|.. .++..+.+. .++|||||+|.+.++|..| ..+++..+.++...+...
T Consensus 41 ~lfVgnl--~~--te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 41 TLYVYGE--DM--TPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp EEEEECS--SC--CHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred EEEEcCC--CC--CHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 5678896 44 77788888855 455555553 7899999999999999999 588999999887766443
No 373
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.60 E-value=3.2e-05 Score=53.62 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=49.2
Q ss_pred hhhcccceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 15 CNKLYNLQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 15 ~~~~~nlsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
..||.|| .+ +++.|...|.. .++..+.+ ..++|||||+|.+.++|..| ..+++..+.++...+..
T Consensus 17 ~l~V~n~--~~--t~~~l~~~F~~~G~i~~v~i---~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 17 TLYVYGE--DM--TPTLLRGAFSPFGNIIDLSM---DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp EEEEECS--SC--CHHHHHHHHTTTSCEEEEEE---ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred EEEEcCC--CC--CHHHHHHHHhhCCCEEEEEe---cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5678896 44 77788888854 34444444 37899999999999999999 58899998887665533
No 374
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.57 E-value=0.015 Score=41.96 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=55.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCC-cEEEEEE
Q 027505 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADG-ICIAIVL 189 (222)
Q Consensus 111 ~~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~g-r~i~v~~ 189 (222)
..+-|.|-+.|... ...+..+|++||.|.+.... + ...+-.|.|.++.+|++||. .||..+ +| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii-~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIF-GESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEE-TTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEe-cCCEEEEEEE
Confidence 34578898999885 56678899999999987752 1 23599999999999999999 599999 54 5566665
Q ss_pred e
Q 027505 190 I 190 (222)
Q Consensus 190 a 190 (222)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 375
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.34 E-value=0.00018 Score=61.64 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=46.5
Q ss_pred hhhccc--ceeeecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCccc
Q 027505 15 CNKLYN--LQAITQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVT 78 (222)
Q Consensus 15 ~~~~~n--lsf~t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~ 78 (222)
..||.| |+|.+ +++.|...|.. .....+.+. .++|||||+|.+.++|+.| ..++|.++.
T Consensus 20 ~l~VgN~gl~~~~--te~~L~~~F~~~G~V~~v~~~---~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 20 SLVVANGGLGNGV--SRNQLLPVLEKCGLVDALLMP---PNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp EEEEETCSGGGTC--CHHHHHHHHHTTSCEEEEECC---TTCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred EEEEEcCCCCCCC--CHHHHHHHHHhcCCeEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 456888 68887 99999999954 454444332 4789999999999999999 889998873
No 376
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.006 Score=42.46 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=45.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~ 175 (222)
+.++| +.|.++...||.++|+.|| -..|+.+-|- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34566 9999999999999999999 4556666664 89999999999999999764
No 377
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.23 E-value=0.00018 Score=51.33 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=42.4
Q ss_pred CCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcc
Q 027505 30 NHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPE 86 (222)
Q Consensus 30 ~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~ 86 (222)
+.|...|.. .++..+.+. ...++|||||+|.+.++|..| ..+++..++++...+..
T Consensus 41 ~~l~~~f~~~G~v~~v~i~-~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~ 98 (112)
T 2dit_A 41 EDLRVECSKFGQIRKLLLF-DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQA 98 (112)
T ss_dssp HHHHHHGGGTSCCSEEEEE-TTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred HHHHHHHHccCCEeEEEEe-cCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 457777744 465665443 336899999999999999999 68999999988766543
No 378
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.12 E-value=9.8e-05 Score=60.19 Aligned_cols=60 Identities=3% Similarity=0.032 Sum_probs=46.6
Q ss_pred hhhcccceeee-------cCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcc
Q 027505 15 CNKLYNLQAIT-------QIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQV 77 (222)
Q Consensus 15 ~~~~~nlsf~t-------~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~ 77 (222)
+.||.||++.+ ..+++.|..+|.. .++..+++. .++|||||.|.+.++|..| ..+++..+
T Consensus 136 tLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~---~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 136 TLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV---ESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp EEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE---GGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred eeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE---CCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 56899999985 1146778888844 566665554 3589999999999999999 78899888
No 379
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.74 E-value=0.0056 Score=54.31 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=41.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHH
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~ 172 (222)
+.|||. .|..+++.+|.++|++||.|.++.+-.++ | -||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 479997 79999999999999999999998876543 2 699999999999987765
No 380
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=95.60 E-value=0.0018 Score=45.62 Aligned_cols=35 Identities=0% Similarity=-0.181 Sum_probs=30.8
Q ss_pred CCCCCcccccccchhhhhhh-hccCCCcccCCCCCC
Q 027505 50 QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDE 84 (222)
Q Consensus 50 ~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~ 84 (222)
++++|||||.|.++++|..| ..++|..++++...+
T Consensus 65 ~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 65 DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 57899999999999999999 789999999877644
No 381
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.56 E-value=0.002 Score=45.40 Aligned_cols=74 Identities=4% Similarity=-0.165 Sum_probs=48.9
Q ss_pred hhhcccceeee---cCCCCCCCCCCCC-CCCCccccccC----CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCc
Q 027505 15 CNKLYNLQAIT---QIPTNHLPSLFKT-KSPKPLKLEKA----QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEP 85 (222)
Q Consensus 15 ~~~~~nlsf~t---~~~~~~l~~~f~~-~p~~~~~l~~~----~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~ 85 (222)
+..|.||.... ..+++.|+..|.. .++..+.+... +.++||+||.|.++++|..| ..++|..++++...+.
T Consensus 10 ~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~ 89 (105)
T 2pe8_A 10 VVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKAC 89 (105)
T ss_dssp EEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEE
Confidence 34477875210 0133445555633 44444444432 47899999999999999999 7899999999887665
Q ss_pred chh
Q 027505 86 ETE 88 (222)
Q Consensus 86 ~~~ 88 (222)
...
T Consensus 90 ~a~ 92 (105)
T 2pe8_A 90 FYN 92 (105)
T ss_dssp ECC
T ss_pred EcC
Confidence 443
No 382
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.47 E-value=0.00079 Score=47.25 Aligned_cols=65 Identities=8% Similarity=0.023 Sum_probs=41.3
Q ss_pred hcccceeeecC--------CCCCCCCCCCC-CCCCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 17 KLYNLQAITQI--------PTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 17 ~~~nlsf~t~~--------~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
..-+|.|.... +++.|+.+|.. .++..+.+. ++++|||||+|.+.++|..|... ...+.++.+.+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V 84 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKI 84 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEE
Confidence 34577887521 34456666633 454555444 48899999999999999998443 33444554443
No 383
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=95.02 E-value=0.0043 Score=43.69 Aligned_cols=57 Identities=5% Similarity=-0.025 Sum_probs=41.1
Q ss_pred CCCCCCCC-CCCCccccccC-----CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 31 HLPSLFKT-KSPKPLKLEKA-----QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 31 ~l~~~f~~-~p~~~~~l~~~-----~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
.|+..|.. .++..+.+..+ +.++||+||+|.++++|..| ..++|..++++.......
T Consensus 31 dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 31 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYC 94 (105)
T ss_dssp HHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEe
Confidence 45555532 44444444433 25799999999999999999 899999999988766443
No 384
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.53 E-value=0.056 Score=39.52 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=54.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeE-EEEeec------------CCCC-CcccEEEEEECCHHHHHHHHHHhCCCe
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYD------------RVTD-RSRGFGFVTMGSVEEAKEAIRLFDGSV 178 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~-~~l~~d------------~~tg-~~rG~aFV~f~~~~~a~~Al~~l~g~~ 178 (222)
..|.|=+.|.+.+ ..+-+.|++||.|.+ .....+ +..+ ....+-.|+|.++.+|.+||. -||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4577778877655 456678999999865 221110 0011 135688999999999999999 59999
Q ss_pred ecCCcEEEEEEecc
Q 027505 179 SADGICIAIVLIEP 192 (222)
Q Consensus 179 ~~~gr~i~v~~a~~ 192 (222)
+ +|..|-|....+
T Consensus 86 i-~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 F-NGVLLGVIPYTK 98 (132)
T ss_dssp E-TTEECEEEECCH
T ss_pred e-CcEEEEEEECCH
Confidence 9 898778877654
No 385
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=94.37 E-value=0.012 Score=42.15 Aligned_cols=49 Identities=4% Similarity=-0.126 Sum_probs=39.2
Q ss_pred CCCCccccccCCCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcchh
Q 027505 39 KSPKPLKLEKAQNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPETE 88 (222)
Q Consensus 39 ~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~~ 88 (222)
.++..+.+... .++||+||.|.+.++|..| ..++|..++++........
T Consensus 42 G~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 42 GGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 45555555554 5799999999999999999 8899999999987765543
No 386
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=93.22 E-value=0.0079 Score=43.33 Aligned_cols=37 Identities=5% Similarity=-0.102 Sum_probs=31.9
Q ss_pred CCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 51 NPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 51 ~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
.++||+||.|.++++|..| ..++|..++++.......
T Consensus 69 ~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~ 106 (118)
T 3ue2_A 69 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 106 (118)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred cceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence 4679999999999999999 899999999988766443
No 387
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=89.47 E-value=0.069 Score=42.09 Aligned_cols=38 Identities=5% Similarity=-0.101 Sum_probs=33.3
Q ss_pred CCCCCcccccccchhhhhhh-hccCCCcccCCCCCCcch
Q 027505 50 QNPSALHLSLLSLSYFRQFS-ASFDGFQVTEDSQDEPET 87 (222)
Q Consensus 50 ~~s~gf~fv~~~~~~~a~~a-~~~~~~~~~~~~~~~~~~ 87 (222)
++++||+||+|.+.++|.+| ..++|..+.++.+.....
T Consensus 172 ~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 172 AEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred cCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 47889999999999999999 889999999998766544
No 388
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.23 E-value=2.7 Score=37.54 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=44.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhC
Q 027505 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (222)
Q Consensus 112 ~~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~ 175 (222)
.+.++|+ +|..+...+|.+.|+.||.+ +|+.+-+ ..|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566676 88999999999999999953 4554443 379999999999999999875
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.75 E-value=0.078 Score=37.08 Aligned_cols=93 Identities=13% Similarity=0.090 Sum_probs=63.0
Q ss_pred cccchhhhhcccceeeecCCCCCCCCCCCCCC---CCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCCc
Q 027505 9 AASSSLCNKLYNLQAITQIPTNHLPSLFKTKS---PKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEP 85 (222)
Q Consensus 9 ~~~~~~~~~~~nlsf~t~~~~~~l~~~f~~~p---~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~~ 85 (222)
-+|.-.++.|.||+-.+ +++-|.-+|...- --++.-... .+ +-++|+|.++..++.+.+...|.+.+....+.
T Consensus 4 ~~~~~~~I~V~~lPp~~--~~e~L~LYFEn~rrsGGG~V~~v~~-~~-~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAV--PDELLTLYFENRRRSGGGPVLSWQR-LG-CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp SCCCCCEEEEESCCTTS--CHHHHHHHHHCTTTTCCCCEEEEEE-ET-TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred CccCccEEEEECCCCCC--ChhHheEEEeCCCcCCCceeeEEEE-cC-CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 34455678899999886 6666777776521 011211222 23 67899999999999999999999988655431
Q ss_pred chhhhhhHHHHhhhhcccccccCCCCCCEEEEcCCCCCCC
Q 027505 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMT 125 (222)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifV~nLp~~~t 125 (222)
+-......++++.+|++.++
T Consensus 80 --------------------P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 --------------------PAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp --------------------ECCCCCCCCCCCCSCCCCCC
T ss_pred --------------------cCCCCCcceEeeecCCCCCC
Confidence 12334566899999999875
No 390
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.68 E-value=0.55 Score=32.02 Aligned_cols=31 Identities=6% Similarity=-0.126 Sum_probs=27.1
Q ss_pred CcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 54 ALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 54 gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
+.+||+|.+.+.|..|..++|.++.++...+
T Consensus 50 d~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLSLNGKELLNRTITI 80 (91)
T ss_dssp SSEEEEESSHHHHHHGGGGTTCEETTEEEEE
T ss_pred CCEEEEECChHHHHHHHhcCCeEeCCeEEEE
Confidence 3489999999999999779999999987655
No 391
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.27 E-value=0.43 Score=34.35 Aligned_cols=62 Identities=13% Similarity=-0.015 Sum_probs=40.5
Q ss_pred hhhcccceee-ecCCCCCCCCCCCC-CCCCccccccCCCCCCcccccccc-hhhhhhh-hcc--CCCcccCCC
Q 027505 15 CNKLYNLQAI-TQIPTNHLPSLFKT-KSPKPLKLEKAQNPSALHLSLLSL-SYFRQFS-ASF--DGFQVTEDS 81 (222)
Q Consensus 15 ~~~~~nlsf~-t~~~~~~l~~~f~~-~p~~~~~l~~~~~s~gf~fv~~~~-~~~a~~a-~~~--~~~~~~~~~ 81 (222)
..+|.||++. | +.+.|+..|.. .+..-+.+.. -...|||.|.+ +.+|..+ ..+ ++..+.+..
T Consensus 20 il~v~~l~~~~~--sredLke~F~~~G~V~~Vd~~~---g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 20 LLKFSGDLDDQT--CREDLHILFSNHGEIKWIDFVR---GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp EEEEEESCCSSC--CHHHHHHHTCSSCCEEEEECCT---TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred EEEEecCCCCcC--CHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 5679999999 8 88889988864 3333333333 33479999999 5555544 555 344555543
No 392
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.58 E-value=1.2 Score=30.63 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=32.1
Q ss_pred CCCCccccccCCCCCCcccccccchhhhhhhhccCCCcccCCCCCC
Q 027505 39 KSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDE 84 (222)
Q Consensus 39 ~p~~~~~l~~~~~s~gf~fv~~~~~~~a~~a~~~~~~~~~~~~~~~ 84 (222)
......++... + +||+|.+.+.|..|..++|.++.++...+
T Consensus 49 G~Vilvr~v~d-~----~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 49 GTIVLVRINQG-Q----MLVTFADSHSALSVLDVDGMKVKGRAVKI 89 (95)
T ss_dssp SCCSEEEEETT-E----EEEECSCSHHHHHHHHGGGSEETTEEEEE
T ss_pred CCEEEEEEecC-c----EEEEEcChHHHHHHHhcCCeeeCCeEEEE
Confidence 33455555555 2 99999999999999779999999987654
No 393
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=41.75 E-value=48 Score=22.66 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHc-cCC---eeE-EEEeecCCCCCcccEEEEEECCHHHHHHH
Q 027505 122 YSMTSSSLAEVFAE-AGT---VAS-AEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (222)
Q Consensus 122 ~~~t~~~L~~~F~~-~G~---i~~-~~l~~d~~tg~~rG~aFV~f~~~~~a~~A 170 (222)
...+..+|++-+.+ |+. +.- -.+......|++.|||.| |.+.+.|++-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677888877664 442 222 244455556889999977 8888777654
No 394
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=40.94 E-value=58 Score=22.33 Aligned_cols=47 Identities=4% Similarity=-0.038 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHc-cCC---eeE-EEEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 122 YSMTSSSLAEVFAE-AGT---VAS-AEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 122 ~~~t~~~L~~~F~~-~G~---i~~-~~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
...+..+|++-+.+ |+. +.- -.+......|++.|||.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888777654 442 222 245555567889999977 888888765
No 395
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=37.40 E-value=62 Score=22.36 Aligned_cols=46 Identities=7% Similarity=-0.049 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHc-cCC---eeEE-EEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 123 SMTSSSLAEVFAE-AGT---VASA-EIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 123 ~~t~~~L~~~F~~-~G~---i~~~-~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
..+..++++-+.+ |+. +.-| .+......|++.|||.| |.+.+.|++
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4577788776654 543 2222 34445556789999977 888888775
No 396
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=33.64 E-value=16 Score=23.06 Aligned_cols=59 Identities=8% Similarity=0.223 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHccCC-----eeEEEEeecCCCCCcccEEEEEECCHHHHHHHHHHhCCCeecCCcEEEEEEec
Q 027505 123 SMTSSSLAEVFAEAGT-----VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSVSADGICIAIVLIE 191 (222)
Q Consensus 123 ~~t~~~L~~~F~~~G~-----i~~~~l~~d~~tg~~rG~aFV~f~~~~~a~~Al~~l~g~~~~~gr~i~v~~a~ 191 (222)
.+...+|..++..-+. |-.+.+. + .|.||+-.. ..+..+++.|++..+ .|+++.|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~-d-------~~s~v~v~~-~~~~~~~~~l~~~~i-~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM-D-------NASYVEILN-GKGPHVLKVMKNTTV-KGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC-S-------SCEEEEECT-TCHHHHHHHHTTCCC----CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe-C-------CcEEEEECH-HHHHHHHHHhccccC-cCceEEEEECC
Confidence 3566677777765443 4455552 2 388998875 457788888999988 89999887664
No 397
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=28.76 E-value=1.5e+02 Score=21.76 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHc-cCC---eeEE-EEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 123 SMTSSSLAEVFAE-AGT---VASA-EIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 123 ~~t~~~L~~~F~~-~G~---i~~~-~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
..+..+|++-+.. |+. +.-| .+......|++.|||.| |.+.+.|.+
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 5677888877765 553 2222 34444456788999987 888888775
No 398
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=28.39 E-value=1.7e+02 Score=21.10 Aligned_cols=46 Identities=33% Similarity=0.380 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHc-cCC---eeEE-EEeecCCCCCcccEEEEEECCHHHHHH
Q 027505 123 SMTSSSLAEVFAE-AGT---VASA-EIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 123 ~~t~~~L~~~F~~-~G~---i~~~-~l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
..+..+|++-+.. |+. +..| .+......|++.|||.| |.+.+.+++
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4678899888764 653 2222 34455556789999987 888888765
No 399
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.50 E-value=54 Score=26.35 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=27.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeec
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d 147 (222)
.-+.|+|||+.++..-|..++.. +.+....++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 46789999999999999999987 66766665554
No 400
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=24.98 E-value=56 Score=22.21 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHc-cCCeeEEE----EeecCCCCCcccEEEEEECCHHHHHH
Q 027505 123 SMTSSSLAEVFAE-AGTVASAE----IVYDRVTDRSRGFGFVTMGSVEEAKE 169 (222)
Q Consensus 123 ~~t~~~L~~~F~~-~G~i~~~~----l~~d~~tg~~rG~aFV~f~~~~~a~~ 169 (222)
..+..++++-+.+ |+.-.++. +......|++.|||.| |.+.+.|++
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566777666543 43322222 2223345678899977 776666554
No 401
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.95 E-value=1.2e+02 Score=20.09 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=20.7
Q ss_pred CeeEEEEeecCCCCCcccEEEEEECC
Q 027505 138 TVASAEIVYDRVTDRSRGFGFVTMGS 163 (222)
Q Consensus 138 ~i~~~~l~~d~~tg~~rG~aFV~f~~ 163 (222)
+|.++++..-...|+-+|||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788876665578999999999874
No 402
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.90 E-value=2.5e+02 Score=20.98 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=37.2
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--HccCCeeEEEEeecCCCCCcccEEEEEEC-CHHHHHHHHH
Q 027505 114 RLYVGNLPY-S--------MTSSSLAEVF--AEAGTVASAEIVYDRVTDRSRGFGFVTMG-SVEEAKEAIR 172 (222)
Q Consensus 114 ~ifV~nLp~-~--------~t~~~L~~~F--~~~G~i~~~~l~~d~~tg~~rG~aFV~f~-~~~~a~~Al~ 172 (222)
.+.|-|+|. . .+..+|++.| ..|.++.- +...++ ..++|++.|.|. +-.-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv-~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRV-RPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEE-EEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCcee-EecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 455677776 2 3446899977 89988664 444443 357899999996 4445555554
No 403
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.31 E-value=33 Score=27.77 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=27.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCeeEEEEeec
Q 027505 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147 (222)
Q Consensus 113 ~~ifV~nLp~~~t~~~L~~~F~~~G~i~~~~l~~d 147 (222)
....|+|||+.++..-|..++.....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999986656666666554
Done!