Query 027506
Match_columns 222
No_of_seqs 259 out of 2114
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 1.8E-23 4E-28 151.2 14.7 129 88-218 17-157 (160)
2 KOG0027 Calmodulin and related 99.9 7.8E-22 1.7E-26 144.8 13.7 126 91-218 8-150 (151)
3 KOG0028 Ca2+-binding protein ( 99.8 7.6E-19 1.6E-23 124.6 13.6 125 92-218 34-171 (172)
4 KOG0031 Myosin regulatory ligh 99.8 5.4E-18 1.2E-22 119.4 13.1 130 87-218 28-166 (171)
5 PTZ00183 centrin; Provisional 99.8 6.1E-17 1.3E-21 119.5 15.2 125 91-217 17-154 (158)
6 PTZ00184 calmodulin; Provision 99.7 5.5E-17 1.2E-21 118.4 14.1 125 91-217 11-148 (149)
7 KOG0030 Myosin essential light 99.7 6.8E-17 1.5E-21 112.0 12.5 124 90-216 10-150 (152)
8 KOG0037 Ca2+-binding protein, 99.7 2E-15 4.4E-20 112.8 13.6 121 92-218 58-189 (221)
9 KOG0034 Ca2+/calmodulin-depend 99.7 1.1E-15 2.4E-20 114.4 11.0 130 88-218 30-176 (187)
10 KOG0036 Predicted mitochondria 99.5 1.9E-13 4.1E-18 110.9 13.0 121 92-217 15-146 (463)
11 cd05022 S-100A13 S-100A13: S-1 99.5 9.3E-14 2E-18 91.9 7.4 66 151-218 8-76 (89)
12 PF13499 EF-hand_7: EF-hand do 99.5 1.4E-13 3E-18 86.6 7.9 64 152-215 1-66 (66)
13 KOG0044 Ca2+ sensor (EF-Hand s 99.4 8.5E-13 1.8E-17 99.0 8.3 126 92-217 27-175 (193)
14 cd05027 S-100B S-100B: S-100B 99.4 1.5E-12 3.3E-17 86.2 8.4 67 151-219 8-81 (88)
15 cd05031 S-100A10_like S-100A10 99.3 1.2E-11 2.5E-16 83.4 8.2 67 150-218 7-80 (94)
16 PLN02964 phosphatidylserine de 99.3 2.2E-11 4.7E-16 106.6 12.0 103 88-218 140-244 (644)
17 cd05026 S-100Z S-100Z: S-100Z 99.3 1.3E-11 2.7E-16 82.9 8.2 68 151-218 10-82 (93)
18 cd05029 S-100A6 S-100A6: S-100 99.3 2E-11 4.3E-16 80.9 8.2 66 152-219 11-81 (88)
19 cd05025 S-100A1 S-100A1: S-100 99.3 2.3E-11 4.9E-16 81.6 8.6 69 150-218 8-81 (92)
20 KOG0027 Calmodulin and related 99.3 3.5E-11 7.5E-16 88.3 9.0 69 150-220 7-75 (151)
21 cd00052 EH Eps15 homology doma 99.2 3.2E-11 6.8E-16 75.9 7.1 61 154-218 2-62 (67)
22 smart00027 EH Eps15 homology d 99.2 5.2E-11 1.1E-15 80.5 8.3 65 150-218 9-73 (96)
23 cd00213 S-100 S-100: S-100 dom 99.2 8.3E-11 1.8E-15 78.2 7.9 70 150-219 7-81 (88)
24 cd05023 S-100A11 S-100A11: S-1 99.2 1.1E-10 2.3E-15 77.5 8.3 70 150-219 8-82 (89)
25 KOG0377 Protein serine/threoni 99.2 4.1E-10 8.9E-15 92.5 11.9 125 92-216 465-614 (631)
26 PF13833 EF-hand_8: EF-hand do 99.2 1.7E-10 3.6E-15 69.4 7.1 53 164-217 1-53 (54)
27 PF14658 EF-hand_9: EF-hand do 99.1 3.6E-10 7.8E-15 69.3 7.1 64 155-219 2-66 (66)
28 cd00051 EFh EF-hand, calcium b 99.1 4.8E-10 1E-14 68.7 7.7 61 153-215 2-62 (63)
29 COG5126 FRQ1 Ca2+-binding prot 99.1 4.5E-10 9.7E-15 81.7 8.5 68 150-220 19-86 (160)
30 cd00252 SPARC_EC SPARC_EC; ext 99.1 4E-10 8.8E-15 78.2 7.7 61 150-216 47-107 (116)
31 PF13499 EF-hand_7: EF-hand do 99.1 3.4E-10 7.5E-15 71.0 6.7 65 92-177 1-66 (66)
32 KOG0038 Ca2+-binding kinase in 99.1 5.1E-10 1.1E-14 78.7 7.7 99 95-218 75-178 (189)
33 KOG0044 Ca2+ sensor (EF-Hand s 99.1 2.1E-09 4.5E-14 80.8 10.9 107 105-219 21-130 (193)
34 KOG0028 Ca2+-binding protein ( 99.1 8.5E-10 1.8E-14 78.8 7.8 70 150-221 32-101 (172)
35 cd05030 calgranulins Calgranul 99.0 3.2E-09 7E-14 70.4 7.3 67 151-219 8-81 (88)
36 KOG0037 Ca2+-binding protein, 99.0 1.3E-08 2.7E-13 76.7 11.2 92 92-216 125-219 (221)
37 PTZ00183 centrin; Provisional 98.9 1.1E-08 2.4E-13 75.2 9.1 85 133-218 33-119 (158)
38 PTZ00184 calmodulin; Provision 98.9 1.3E-08 2.9E-13 73.9 8.5 84 133-217 27-112 (149)
39 KOG4223 Reticulocalbin, calume 98.9 9.9E-09 2.1E-13 81.5 7.8 128 91-219 77-230 (325)
40 KOG0031 Myosin regulatory ligh 98.8 2.6E-08 5.6E-13 70.9 8.0 65 150-220 31-95 (171)
41 KOG0041 Predicted Ca2+-binding 98.8 4.8E-08 1E-12 72.5 8.0 66 151-218 99-164 (244)
42 smart00027 EH Eps15 homology d 98.7 6.1E-08 1.3E-12 65.4 7.0 63 91-180 10-73 (96)
43 cd00052 EH Eps15 homology doma 98.7 6.6E-08 1.4E-12 60.5 6.2 60 94-180 2-62 (67)
44 PF13833 EF-hand_8: EF-hand do 98.7 1E-07 2.3E-12 57.1 6.6 52 103-179 1-53 (54)
45 PF00036 EF-hand_1: EF hand; 98.6 5.7E-08 1.2E-12 50.1 3.9 27 153-179 2-28 (29)
46 cd05025 S-100A1 S-100A1: S-100 98.6 2.8E-07 6.1E-12 61.6 8.2 70 91-181 9-82 (92)
47 cd05031 S-100A10_like S-100A10 98.6 1.7E-07 3.7E-12 63.0 7.0 65 92-181 9-81 (94)
48 PF00036 EF-hand_1: EF hand; 98.6 7.8E-08 1.7E-12 49.6 4.0 28 190-217 1-28 (29)
49 cd05026 S-100Z S-100Z: S-100Z 98.6 3.3E-07 7.2E-12 61.4 8.0 69 92-181 11-83 (93)
50 cd05022 S-100A13 S-100A13: S-1 98.6 1.9E-07 4E-12 61.8 6.7 65 92-180 9-76 (89)
51 cd00051 EFh EF-hand, calcium b 98.6 3.2E-07 6.9E-12 55.8 7.4 60 93-177 2-62 (63)
52 cd05027 S-100B S-100B: S-100B 98.6 3.7E-07 8E-12 60.4 7.8 64 92-180 9-80 (88)
53 cd00252 SPARC_EC SPARC_EC; ext 98.5 3.3E-07 7.2E-12 63.7 7.0 57 92-177 49-106 (116)
54 KOG4223 Reticulocalbin, calume 98.5 2.1E-07 4.5E-12 74.1 6.4 118 94-213 166-301 (325)
55 PF13405 EF-hand_6: EF-hand do 98.5 1.5E-07 3.4E-12 49.5 3.9 30 152-181 1-31 (31)
56 cd05024 S-100A10 S-100A10: A s 98.5 1.2E-06 2.5E-11 57.8 8.4 66 152-218 9-77 (91)
57 cd05029 S-100A6 S-100A6: S-100 98.5 9.5E-07 2.1E-11 58.5 8.1 64 92-180 11-80 (88)
58 KOG0040 Ca2+-binding actin-bun 98.5 9.1E-07 2E-11 82.3 9.9 117 90-216 2252-2397(2399)
59 PLN02964 phosphatidylserine de 98.5 8.5E-07 1.8E-11 78.3 9.3 63 92-179 180-243 (644)
60 KOG2643 Ca2+ binding protein, 98.4 9.9E-07 2.2E-11 72.9 7.6 126 92-221 319-457 (489)
61 KOG0030 Myosin essential light 98.4 1.2E-06 2.6E-11 61.5 6.7 68 149-218 9-78 (152)
62 PF12763 EF-hand_4: Cytoskelet 98.3 4E-06 8.6E-11 57.1 8.0 62 150-216 9-70 (104)
63 KOG0036 Predicted mitochondria 98.3 3.2E-06 6.9E-11 69.5 8.3 68 150-218 13-80 (463)
64 PRK12309 transaldolase/EF-hand 98.3 2.3E-06 4.9E-11 71.7 7.7 60 146-220 329-388 (391)
65 cd05023 S-100A11 S-100A11: S-1 98.3 7.9E-06 1.7E-10 54.2 7.8 69 92-180 10-81 (89)
66 cd00213 S-100 S-100: S-100 dom 98.2 8.8E-06 1.9E-10 53.8 7.9 69 91-180 8-80 (88)
67 KOG2643 Ca2+ binding protein, 98.2 1.2E-05 2.5E-10 66.7 9.3 122 92-216 234-383 (489)
68 PF13202 EF-hand_5: EF hand; P 98.2 2.8E-06 6.1E-11 42.2 3.3 24 153-176 1-24 (25)
69 PF14658 EF-hand_9: EF-hand do 98.2 1.2E-05 2.5E-10 49.6 6.6 60 95-179 2-64 (66)
70 PF13405 EF-hand_6: EF-hand do 98.1 3.7E-06 7.9E-11 44.2 3.0 29 92-120 1-31 (31)
71 KOG0034 Ca2+/calmodulin-depend 98.1 7.7E-05 1.7E-09 56.2 10.8 110 105-221 25-136 (187)
72 KOG2562 Protein phosphatase 2 98.1 2E-05 4.4E-10 65.8 8.0 115 97-213 284-420 (493)
73 KOG0040 Ca2+-binding actin-bun 98.0 1.4E-05 3E-10 74.8 7.1 69 150-218 2252-2325(2399)
74 KOG4666 Predicted phosphate ac 98.0 2E-05 4.3E-10 63.0 6.6 99 91-217 259-359 (412)
75 PF14788 EF-hand_10: EF hand; 98.0 4.3E-05 9.4E-10 44.3 6.1 48 168-217 2-49 (51)
76 PF10591 SPARC_Ca_bdg: Secrete 98.0 4.2E-06 9E-11 58.0 2.0 62 149-214 52-113 (113)
77 PF13202 EF-hand_5: EF hand; P 98.0 1.6E-05 3.6E-10 39.4 3.6 25 191-215 1-25 (25)
78 KOG0041 Predicted Ca2+-binding 97.9 9.3E-05 2E-09 55.3 9.0 95 92-211 100-197 (244)
79 PF12763 EF-hand_4: Cytoskelet 97.9 3.3E-05 7.2E-10 52.6 5.8 61 92-179 11-71 (104)
80 cd05030 calgranulins Calgranul 97.9 7.4E-05 1.6E-09 49.4 7.0 68 92-180 9-80 (88)
81 KOG4065 Uncharacterized conser 97.9 5.5E-05 1.2E-09 51.4 6.2 60 155-214 71-142 (144)
82 PLN03210 Resistant to P. syrin 97.8 5.5E-05 1.2E-09 72.4 7.0 47 2-48 133-179 (1153)
83 PF14788 EF-hand_10: EF hand; 97.8 0.00016 3.5E-09 42.0 6.0 49 107-180 2-50 (51)
84 KOG0046 Ca2+-binding actin-bun 97.7 0.00014 3E-09 61.8 7.5 66 151-217 19-85 (627)
85 KOG0751 Mitochondrial aspartat 97.6 0.00043 9.2E-09 58.6 8.7 117 92-212 109-239 (694)
86 cd05024 S-100A10 S-100A10: A s 97.5 0.001 2.2E-08 43.9 8.3 70 92-181 9-78 (91)
87 KOG0377 Protein serine/threoni 97.4 0.00043 9.4E-09 57.8 6.6 68 92-180 548-616 (631)
88 PF09279 EF-hand_like: Phospho 97.4 0.00059 1.3E-08 44.5 6.0 66 153-219 2-71 (83)
89 KOG2562 Protein phosphatase 2 97.4 0.00065 1.4E-08 57.0 7.1 110 92-217 226-343 (493)
90 PRK12309 transaldolase/EF-hand 97.4 0.00047 1E-08 58.0 6.3 51 91-179 334-385 (391)
91 KOG4251 Calcium binding protei 97.3 0.0013 2.7E-08 51.0 7.5 27 92-118 102-129 (362)
92 smart00054 EFh EF-hand, calciu 97.1 0.00071 1.5E-08 33.7 3.1 25 154-178 3-27 (29)
93 smart00054 EFh EF-hand, calciu 97.1 0.00096 2.1E-08 33.1 3.3 27 191-217 2-28 (29)
94 KOG0033 Ca2+/calmodulin-depend 97.0 0.00036 7.7E-09 54.5 2.2 36 21-57 236-271 (355)
95 KOG0751 Mitochondrial aspartat 96.9 0.022 4.8E-07 48.6 11.4 92 90-181 32-138 (694)
96 PF10591 SPARC_Ca_bdg: Secrete 96.8 0.00039 8.4E-09 48.2 0.6 57 92-175 55-112 (113)
97 KOG4251 Calcium binding protei 96.6 0.007 1.5E-07 46.9 6.3 68 150-217 100-168 (362)
98 KOG3555 Ca2+-binding proteogly 96.5 0.0052 1.1E-07 49.9 4.8 62 150-217 249-310 (434)
99 KOG1029 Endocytic adaptor prot 96.3 0.0058 1.3E-07 54.6 4.7 63 149-215 193-255 (1118)
100 KOG0169 Phosphoinositide-speci 96.3 0.051 1.1E-06 48.8 10.2 125 92-218 137-275 (746)
101 KOG0046 Ca2+-binding actin-bun 96.2 0.021 4.4E-07 49.1 7.3 66 92-179 20-85 (627)
102 KOG0032 Ca2+/calmodulin-depend 96.1 0.0015 3.2E-08 55.2 -0.2 82 21-104 262-353 (382)
103 KOG1707 Predicted Ras related/ 96.1 0.024 5.2E-07 49.5 7.0 63 150-216 314-376 (625)
104 KOG0038 Ca2+-binding kinase in 96.0 0.027 5.9E-07 40.2 5.8 66 92-179 109-177 (189)
105 PF05042 Caleosin: Caleosin re 95.8 0.2 4.4E-06 37.0 9.8 122 92-214 8-163 (174)
106 PF05042 Caleosin: Caleosin re 94.9 0.073 1.6E-06 39.3 5.3 67 152-218 8-125 (174)
107 KOG4666 Predicted phosphate ac 94.8 0.072 1.6E-06 43.2 5.4 68 150-218 258-325 (412)
108 KOG0615 Serine/threonine prote 94.8 0.0053 1.1E-07 51.4 -1.0 32 27-58 411-442 (475)
109 PF08726 EFhand_Ca_insen: Ca2+ 94.8 0.024 5.3E-07 35.4 2.2 56 149-214 4-66 (69)
110 KOG0042 Glycerol-3-phosphate d 94.7 0.081 1.8E-06 46.1 5.8 66 151-218 593-658 (680)
111 KOG4578 Uncharacterized conser 94.6 0.039 8.5E-07 44.7 3.4 67 150-220 332-401 (421)
112 KOG0035 Ca2+-binding actin-bun 94.3 0.13 2.9E-06 47.3 6.5 71 150-220 746-819 (890)
113 KOG1955 Ral-GTPase effector RA 94.2 0.13 2.8E-06 44.1 5.8 62 151-216 231-292 (737)
114 KOG2243 Ca2+ release channel ( 93.8 0.1 2.2E-06 49.9 4.9 59 155-216 4061-4119(5019)
115 PF05517 p25-alpha: p25-alpha 93.2 0.92 2E-05 33.2 8.2 64 155-218 6-70 (154)
116 PLN02952 phosphoinositide phos 93.2 0.99 2.2E-05 40.4 9.8 67 150-217 37-110 (599)
117 KOG1029 Endocytic adaptor prot 93.2 0.14 3.1E-06 46.1 4.5 61 92-179 196-257 (1118)
118 KOG0599 Phosphorylase kinase g 93.0 0.032 6.9E-07 44.6 0.4 32 27-58 257-288 (411)
119 PF09069 EF-hand_3: EF-hand; 93.0 1.3 2.9E-05 29.2 7.9 65 151-218 3-76 (90)
120 PF09279 EF-hand_like: Phospho 92.3 0.48 1E-05 30.6 5.2 66 92-180 1-70 (83)
121 KOG4347 GTPase-activating prot 92.2 0.82 1.8E-05 40.7 7.8 74 134-210 535-611 (671)
122 PLN03224 probable serine/threo 92.2 0.047 1E-06 47.9 0.3 52 5-57 450-504 (507)
123 KOG0607 MAP kinase-interacting 92.1 0.066 1.4E-06 43.8 1.1 32 27-58 335-366 (463)
124 KOG4065 Uncharacterized conser 91.7 0.41 8.8E-06 32.9 4.3 73 84-176 60-142 (144)
125 KOG3555 Ca2+-binding proteogly 91.7 0.51 1.1E-05 38.7 5.6 61 92-181 251-312 (434)
126 KOG4578 Uncharacterized conser 91.4 0.22 4.7E-06 40.5 3.3 64 92-179 334-398 (421)
127 KOG3866 DNA-binding protein of 91.3 0.41 8.8E-06 38.7 4.6 84 107-215 224-322 (442)
128 KOG1265 Phospholipase C [Lipid 90.6 6.1 0.00013 36.9 11.7 81 136-217 207-299 (1189)
129 PLN03225 Serine/threonine-prot 89.6 0.17 3.7E-06 45.1 1.4 84 29-117 426-511 (566)
130 KOG0169 Phosphoinositide-speci 88.7 1.2 2.6E-05 40.4 5.9 66 150-217 135-200 (746)
131 KOG0604 MAP kinase-activated p 88.6 0.11 2.3E-06 42.2 -0.5 31 28-58 297-327 (400)
132 cd07869 STKc_PFTAIRE1 Catalyti 88.0 0.16 3.4E-06 41.1 0.1 30 28-57 263-292 (303)
133 PTZ00284 protein kinase; Provi 86.1 0.19 4.1E-06 43.6 -0.5 30 29-58 414-443 (467)
134 KOG1955 Ral-GTPase effector RA 86.0 1.9 4.2E-05 37.2 5.4 61 92-179 232-293 (737)
135 KOG1290 Serine/threonine prote 85.7 0.27 5.9E-06 42.4 0.3 29 30-58 527-555 (590)
136 PLN02222 phosphoinositide phos 84.3 4.8 0.0001 36.0 7.3 67 150-218 24-91 (581)
137 KOG0671 LAMMER dual specificit 84.2 0.31 6.7E-06 40.7 -0.0 29 30-58 383-411 (415)
138 KOG4347 GTPase-activating prot 84.1 1.1 2.4E-05 39.9 3.2 56 92-173 556-612 (671)
139 KOG2871 Uncharacterized conser 83.9 1 2.2E-05 37.5 2.7 64 148-213 306-370 (449)
140 KOG0035 Ca2+-binding actin-bun 83.5 8.7 0.00019 36.0 8.7 83 92-175 748-848 (890)
141 cd07874 STKc_JNK3 Catalytic do 82.7 0.4 8.6E-06 39.8 0.0 31 28-58 286-316 (355)
142 PTZ00036 glycogen synthase kin 82.5 0.35 7.6E-06 41.7 -0.4 31 28-58 326-356 (440)
143 PF14513 DAG_kinase_N: Diacylg 82.2 1.7 3.8E-05 31.1 3.1 52 165-220 5-63 (138)
144 PF08976 DUF1880: Domain of un 82.0 1.4 3.1E-05 30.3 2.5 31 186-216 4-34 (118)
145 cd08315 Death_TRAILR_DR4_DR5 D 82.0 13 0.00027 24.9 8.4 88 90-195 3-90 (96)
146 cd07873 STKc_PCTAIRE1 Catalyti 81.7 0.43 9.4E-06 38.4 -0.1 31 28-58 261-291 (301)
147 cd07872 STKc_PCTAIRE2 Catalyti 81.6 0.46 9.9E-06 38.5 0.0 31 28-58 261-291 (309)
148 PLN02228 Phosphoinositide phos 81.5 9 0.0002 34.2 7.9 68 149-218 22-93 (567)
149 cd07876 STKc_JNK2 Catalytic do 81.2 0.45 9.7E-06 39.6 -0.2 31 28-58 290-320 (359)
150 cd07845 STKc_CDK10 Catalytic d 80.9 0.54 1.2E-05 38.0 0.2 31 28-58 265-295 (309)
151 cd07875 STKc_JNK1 Catalytic do 79.7 0.44 9.6E-06 39.7 -0.7 31 28-58 293-323 (364)
152 KOG3449 60S acidic ribosomal p 79.7 14 0.0003 25.2 6.5 54 153-213 3-56 (112)
153 KOG0667 Dual-specificity tyros 78.5 0.75 1.6E-05 40.8 0.3 29 30-58 479-507 (586)
154 PHA03212 serine/threonine kina 78.3 0.73 1.6E-05 39.1 0.2 30 28-57 351-380 (391)
155 cd08227 PK_STRAD_alpha Pseudok 78.1 0.96 2.1E-05 37.0 0.8 29 29-57 283-311 (327)
156 PLN02230 phosphoinositide phos 77.5 14 0.00031 33.3 7.9 68 149-217 27-102 (598)
157 KOG0998 Synaptic vesicle prote 77.1 1 2.2E-05 42.2 0.8 64 150-217 282-345 (847)
158 KOG4236 Serine/threonine prote 76.6 2.1 4.6E-05 37.8 2.5 30 28-57 794-823 (888)
159 cd07878 STKc_p38beta_MAPK11 Ca 76.5 0.79 1.7E-05 37.8 -0.1 30 29-58 274-303 (343)
160 PHA03207 serine/threonine kina 75.7 1.2 2.5E-05 37.7 0.7 31 28-58 350-380 (392)
161 cd07313 terB_like_2 tellurium 75.3 3.9 8.4E-05 27.4 3.1 53 165-217 13-65 (104)
162 cd07850 STKc_JNK Catalytic dom 74.9 0.91 2E-05 37.6 -0.1 30 29-58 287-316 (353)
163 cd07859 STKc_TDY_MAPK_plant Ca 74.4 0.86 1.9E-05 37.3 -0.4 30 28-57 265-294 (338)
164 cd07853 STKc_NLK Catalytic dom 74.2 0.78 1.7E-05 38.3 -0.7 31 28-58 263-293 (372)
165 KOG0669 Cyclin T-dependent kin 74.1 1.2 2.6E-05 35.5 0.4 33 26-58 288-320 (376)
166 KOG0661 MAPK related serine/th 73.6 0.85 1.8E-05 39.3 -0.6 33 27-59 265-297 (538)
167 PLN02223 phosphoinositide phos 72.9 17 0.00036 32.3 7.0 67 150-217 15-92 (537)
168 cd08226 PK_STRAD_beta Pseudoki 72.4 0.92 2E-05 37.1 -0.7 30 29-58 284-313 (328)
169 KOG0588 Serine/threonine prote 72.4 1.3 2.7E-05 39.9 0.2 31 27-57 237-267 (786)
170 KOG0575 Polo-like serine/threo 72.3 1 2.2E-05 39.8 -0.5 31 27-57 243-273 (592)
171 PF12174 RST: RCD1-SRO-TAF4 (R 72.2 8.9 0.00019 24.0 3.9 34 187-220 23-56 (70)
172 cd07854 STKc_MAPK4_6 Catalytic 72.1 1.2 2.6E-05 36.8 -0.1 31 28-58 275-305 (342)
173 cd06649 PKc_MEK2 Catalytic dom 72.0 1 2.2E-05 37.0 -0.5 31 28-58 276-306 (331)
174 KOG0666 Cyclin C-dependent kin 71.5 1.7 3.6E-05 35.8 0.6 31 29-59 313-343 (438)
175 KOG0660 Mitogen-activated prot 71.2 1.3 2.9E-05 36.6 0.1 32 27-58 284-315 (359)
176 cd08216 PK_STRAD Pseudokinase 70.0 1.3 2.8E-05 35.8 -0.3 30 29-58 271-300 (314)
177 PLN02952 phosphoinositide phos 69.7 18 0.00039 32.7 6.6 56 164-220 13-68 (599)
178 KOG0663 Protein kinase PITSLRE 69.6 1.6 3.5E-05 36.1 0.2 31 27-57 335-365 (419)
179 KOG0580 Serine/threonine prote 69.1 1.2 2.6E-05 35.1 -0.6 31 27-57 247-277 (281)
180 KOG1167 Serine/threonine prote 68.9 1.8 3.9E-05 36.6 0.3 30 28-57 356-385 (418)
181 cd07851 STKc_p38 Catalytic dom 68.8 1.5 3.2E-05 36.2 -0.2 31 28-58 273-303 (343)
182 PF05517 p25-alpha: p25-alpha 68.8 38 0.00082 24.7 7.3 65 94-180 2-70 (154)
183 KOG0668 Casein kinase II, alph 68.0 2.7 5.9E-05 33.1 1.1 32 27-58 296-327 (338)
184 cd05574 STKc_phototropin_like 67.5 2.5 5.4E-05 34.2 0.9 31 28-58 260-294 (316)
185 PF00404 Dockerin_1: Dockerin 67.3 6.6 0.00014 18.3 1.9 14 161-174 1-14 (21)
186 TIGR01848 PHA_reg_PhaR polyhyd 67.1 18 0.00039 24.6 4.7 49 158-208 10-68 (107)
187 KOG4403 Cell surface glycoprot 66.9 20 0.00043 30.7 5.9 79 89-196 66-146 (575)
188 cd06611 STKc_SLK_like Catalyti 66.4 2 4.4E-05 34.0 0.2 31 28-58 237-267 (280)
189 KOG0659 Cdk activating kinase 66.3 2.3 5E-05 34.1 0.4 31 27-57 255-285 (318)
190 cd07858 STKc_TEY_MAPK_plant Ca 66.2 2.1 4.6E-05 35.2 0.2 31 28-58 266-296 (337)
191 KOG0581 Mitogen-activated prot 65.9 1.9 4.1E-05 35.9 -0.1 34 26-59 307-341 (364)
192 cd05630 STKc_GRK6 Catalytic do 65.2 3 6.6E-05 33.3 1.0 30 28-57 231-265 (285)
193 cd07855 STKc_ERK5 Catalytic do 65.0 1.9 4.1E-05 35.3 -0.2 32 27-58 268-299 (334)
194 KOG0579 Ste20-like serine/thre 64.9 2 4.3E-05 38.8 -0.2 33 25-57 260-293 (1187)
195 PHA03210 serine/threonine kina 64.7 1.8 3.9E-05 38.0 -0.5 30 29-58 430-459 (501)
196 cd07834 STKc_MAPK Catalytic do 64.7 2.1 4.4E-05 35.0 -0.1 31 28-58 264-294 (330)
197 cd07879 STKc_p38delta_MAPK13 C 64.7 2.2 4.8E-05 35.2 0.1 31 28-58 272-302 (342)
198 cd05631 STKc_GRK4 Catalytic do 63.9 3.1 6.7E-05 33.2 0.8 31 28-58 231-266 (285)
199 KOG4004 Matricellular protein 63.8 2.7 6E-05 31.9 0.4 54 157-215 193-248 (259)
200 cd07841 STKc_CDK7 Catalytic do 63.8 2.1 4.5E-05 34.3 -0.2 31 28-58 257-287 (298)
201 cd07849 STKc_ERK1_2_like Catal 63.7 2.2 4.8E-05 35.0 -0.1 31 28-58 267-297 (336)
202 cd06615 PKc_MEK Catalytic doma 63.6 2.4 5.1E-05 34.3 0.1 31 28-58 262-292 (308)
203 cd05612 STKc_PRKX_like Catalyt 63.4 2.3 5E-05 34.1 -0.0 30 28-57 224-258 (291)
204 KOG0603 Ribosomal protein S6 k 63.2 2.8 6.1E-05 37.3 0.4 30 27-56 537-566 (612)
205 cd05600 STKc_Sid2p_Dbf2p Catal 63.1 2.6 5.6E-05 34.5 0.2 31 28-58 232-262 (333)
206 PLN00009 cyclin-dependent kina 63.1 2.3 4.9E-05 34.0 -0.1 31 28-58 259-289 (294)
207 PF04157 EAP30: EAP30/Vps36 fa 63.0 70 0.0015 24.8 9.5 15 110-124 61-75 (223)
208 cd05579 STKc_MAST_like Catalyt 62.8 2.9 6.4E-05 32.4 0.5 30 28-57 229-261 (265)
209 PTZ00024 cyclin-dependent prot 62.5 2.2 4.8E-05 34.9 -0.3 31 28-58 288-318 (335)
210 PLN00034 mitogen-activated pro 62.3 2.4 5.2E-05 35.1 -0.1 31 28-58 303-333 (353)
211 KOG0658 Glycogen synthase kina 62.2 3.6 7.7E-05 34.3 0.8 32 27-58 280-311 (364)
212 PF07308 DUF1456: Protein of u 62.2 35 0.00077 21.1 5.1 45 169-215 15-59 (68)
213 cd06605 PKc_MAPKK Catalytic do 62.1 2 4.3E-05 33.6 -0.6 30 28-57 232-261 (265)
214 KOG0042 Glycerol-3-phosphate d 62.0 23 0.00049 31.6 5.6 70 86-180 586-658 (680)
215 cd08316 Death_FAS_TNFRSF6 Deat 61.9 45 0.00098 22.3 6.9 77 106-196 17-93 (97)
216 cd05608 STKc_GRK1 Catalytic do 61.8 3.2 6.9E-05 33.0 0.5 30 28-57 227-261 (280)
217 PF07879 PHB_acc_N: PHB/PHA ac 61.3 15 0.00034 22.4 3.2 42 158-200 10-60 (64)
218 PTZ00373 60S Acidic ribosomal 61.2 36 0.00079 23.5 5.5 54 153-213 5-58 (112)
219 cd07880 STKc_p38gamma_MAPK12 C 60.9 2.9 6.3E-05 34.5 0.1 31 28-58 273-303 (343)
220 cd05570 STKc_PKC Catalytic dom 60.7 3.2 7E-05 33.8 0.3 31 28-58 222-257 (318)
221 cd06619 PKc_MKK5 Catalytic dom 60.6 3.4 7.3E-05 32.8 0.4 31 28-58 228-258 (279)
222 cd05571 STKc_PKB Catalytic dom 60.4 3.1 6.6E-05 34.0 0.2 30 28-57 221-255 (323)
223 cd06616 PKc_MKK4 Catalytic dom 59.9 3 6.5E-05 33.2 0.0 31 28-58 242-272 (288)
224 PF09068 EF-hand_2: EF hand; 59.7 15 0.00032 26.0 3.5 78 90-180 40-126 (127)
225 cd05572 STKc_cGK_PKG Catalytic 59.6 2.9 6.4E-05 32.6 -0.1 30 28-57 222-256 (262)
226 cd06650 PKc_MEK1 Catalytic dom 59.5 2.1 4.6E-05 35.2 -0.9 31 28-58 274-304 (333)
227 cd05607 STKc_GRK7 Catalytic do 58.8 4.3 9.2E-05 32.2 0.8 30 28-57 225-258 (277)
228 cd05590 STKc_nPKC_eta Catalyti 58.8 4 8.7E-05 33.3 0.6 30 28-57 222-257 (320)
229 cd05633 STKc_GRK3 Catalytic do 58.2 3.8 8.3E-05 32.6 0.4 30 28-57 225-259 (279)
230 cd05614 STKc_MSK2_N N-terminal 58.2 3.5 7.5E-05 33.7 0.1 31 28-58 237-272 (332)
231 PTZ00263 protein kinase A cata 57.7 4.9 0.00011 32.9 1.0 31 28-58 241-276 (329)
232 KOG1027 Serine/threonine prote 57.6 2.6 5.7E-05 38.9 -0.7 29 28-56 742-770 (903)
233 cd05594 STKc_PKB_alpha Catalyt 57.2 4.9 0.00011 32.8 0.9 30 28-57 222-256 (325)
234 cd06656 STKc_PAK3 Catalytic do 57.2 3.8 8.2E-05 32.9 0.2 30 29-58 245-274 (297)
235 cd06643 STKc_SLK Catalytic dom 56.9 3.3 7.1E-05 32.9 -0.2 31 28-58 237-267 (282)
236 cd06655 STKc_PAK2 Catalytic do 56.5 4.3 9.3E-05 32.6 0.4 31 28-58 244-274 (296)
237 cd07877 STKc_p38alpha_MAPK14 C 56.0 3.5 7.6E-05 34.0 -0.2 31 28-58 275-305 (345)
238 KOG1707 Predicted Ras related/ 55.5 14 0.00031 32.9 3.4 32 92-123 316-348 (625)
239 KOG0039 Ferric reductase, NADH 55.2 38 0.00083 31.0 6.2 68 150-218 17-90 (646)
240 cd05588 STKc_aPKC Catalytic do 55.1 5 0.00011 32.9 0.6 30 28-57 231-266 (329)
241 KOG0198 MEKK and related serin 54.9 4.1 9E-05 33.5 0.1 31 28-58 251-281 (313)
242 PTZ00426 cAMP-dependent protei 54.7 4.5 9.8E-05 33.4 0.3 30 28-57 254-288 (340)
243 COG4103 Uncharacterized protei 54.3 24 0.00052 25.4 3.8 63 155-219 34-96 (148)
244 cd05833 Ribosomal_P2 Ribosomal 53.7 56 0.0012 22.4 5.4 57 154-217 4-60 (109)
245 cd05611 STKc_Rim15_like Cataly 53.7 4.7 0.0001 31.4 0.2 31 27-57 222-255 (260)
246 cd05593 STKc_PKB_gamma Catalyt 52.3 5.1 0.00011 32.8 0.2 30 28-57 221-255 (328)
247 cd06609 STKc_MST3_like Catalyt 52.2 5.2 0.00011 31.5 0.2 31 28-58 226-256 (274)
248 KOG4004 Matricellular protein 51.9 4.5 9.8E-05 30.7 -0.1 54 97-177 193-248 (259)
249 cd05585 STKc_YPK1_like Catalyt 51.7 4.4 9.5E-05 32.9 -0.3 31 28-58 219-252 (312)
250 cd05601 STKc_CRIK Catalytic do 51.6 6.2 0.00013 32.2 0.6 29 28-57 239-267 (330)
251 cd06621 PKc_MAPKK_Pek1_like Ca 51.6 3.3 7.1E-05 33.0 -1.0 29 29-57 242-270 (287)
252 cd06617 PKc_MKK3_6 Catalytic d 51.5 5 0.00011 31.7 0.1 31 28-58 236-266 (283)
253 cd05620 STKc_nPKC_delta Cataly 51.0 7 0.00015 31.8 0.8 31 28-58 222-253 (316)
254 cd06633 STKc_TAO3 Catalytic do 50.9 5 0.00011 32.5 -0.0 32 29-60 249-280 (313)
255 cd07857 STKc_MPK1 Catalytic do 50.6 3.8 8.3E-05 33.5 -0.8 31 28-58 267-297 (332)
256 cd05577 STKc_GRK Catalytic dom 50.5 4.7 0.0001 31.9 -0.3 30 28-57 224-258 (277)
257 PF03672 UPF0154: Uncharacteri 50.3 44 0.00095 20.5 4.0 33 164-198 28-60 (64)
258 PF03979 Sigma70_r1_1: Sigma-7 50.2 17 0.00037 23.3 2.4 33 164-200 18-50 (82)
259 cd05605 STKc_GRK4_like Catalyt 50.0 5.8 0.00013 31.6 0.2 31 28-58 231-266 (285)
260 cd05591 STKc_nPKC_epsilon Cata 49.8 6.6 0.00014 31.9 0.5 31 27-57 221-258 (321)
261 cd05618 STKc_aPKC_iota Catalyt 49.6 7.2 0.00016 32.0 0.7 30 28-57 231-266 (329)
262 PF11116 DUF2624: Protein of u 49.4 72 0.0016 20.8 6.2 32 167-200 14-45 (85)
263 cd05596 STKc_ROCK Catalytic do 49.3 6.2 0.00013 33.0 0.3 30 28-57 277-308 (370)
264 cd05586 STKc_Sck1_like Catalyt 49.3 5.6 0.00012 32.5 0.0 30 28-57 224-257 (330)
265 cd05573 STKc_ROCK_NDR_like Cat 49.2 6.8 0.00015 32.2 0.5 30 27-57 259-289 (350)
266 cd05606 STKc_beta_ARK Catalyti 48.7 7.4 0.00016 30.9 0.6 32 27-58 224-260 (278)
267 cd06623 PKc_MAPKK_plant_like C 48.2 4.9 0.00011 31.2 -0.5 30 28-57 231-260 (264)
268 PF14513 DAG_kinase_N: Diacylg 48.0 73 0.0016 22.9 5.5 35 165-200 46-80 (138)
269 cd06657 STKc_PAK4 Catalytic do 47.9 6.2 0.00014 31.6 0.1 31 28-58 245-275 (292)
270 cd05595 STKc_PKB_beta Catalyti 47.6 6.9 0.00015 32.0 0.3 31 28-58 221-256 (323)
271 cd06618 PKc_MKK7 Catalytic dom 47.2 6.1 0.00013 31.6 -0.1 31 28-58 248-278 (296)
272 cd05619 STKc_nPKC_theta Cataly 47.0 8.3 0.00018 31.4 0.7 31 28-58 222-253 (316)
273 cd05584 STKc_p70S6K Catalytic 46.9 7.2 0.00016 31.8 0.3 32 27-58 225-261 (323)
274 PF08461 HTH_12: Ribonuclease 46.8 30 0.00065 21.2 3.0 37 164-202 10-46 (66)
275 PF04558 tRNA_synt_1c_R1: Glut 46.7 26 0.00056 25.9 3.2 53 143-198 77-129 (164)
276 cd06622 PKc_MAPKK_PBS2_like Ca 46.6 5.2 0.00011 31.7 -0.6 31 28-58 237-267 (286)
277 KOG0998 Synaptic vesicle prote 46.4 12 0.00027 35.3 1.7 63 152-218 12-74 (847)
278 cd05575 STKc_SGK Catalytic dom 46.1 11 0.00024 30.7 1.3 31 27-57 221-255 (323)
279 cd06644 STKc_STK10_LOK Catalyt 46.1 5.5 0.00012 31.8 -0.5 30 28-57 244-273 (292)
280 cd07856 STKc_Sty1_Hog1 Catalyt 45.7 6.2 0.00013 32.3 -0.3 30 28-57 263-292 (328)
281 PF01023 S_100: S-100/ICaBP ty 45.5 53 0.0012 18.3 3.6 28 152-179 7-36 (44)
282 PF05099 TerB: Tellurite resis 45.3 4.8 0.0001 28.5 -0.9 14 165-178 37-50 (140)
283 PRK00523 hypothetical protein; 45.2 55 0.0012 20.6 3.9 41 155-198 28-68 (72)
284 PF09373 PMBR: Pseudomurein-bi 45.2 25 0.00054 18.2 2.1 16 203-218 2-17 (33)
285 KOG0610 Putative serine/threon 45.0 14 0.0003 31.7 1.6 51 6-57 342-396 (459)
286 cd06658 STKc_PAK5 Catalytic do 44.6 6.7 0.00015 31.4 -0.2 30 29-58 248-277 (292)
287 cd06642 STKc_STK25-YSK1 Cataly 44.5 4.2 9.1E-05 32.1 -1.4 30 28-57 228-257 (277)
288 KOG2301 Voltage-gated Ca2+ cha 44.4 19 0.0004 36.4 2.6 73 147-219 1413-1486(1592)
289 cd06640 STKc_MST4 Catalytic do 44.1 6.3 0.00014 31.1 -0.5 31 28-58 228-258 (277)
290 cd05582 STKc_RSK_N N-terminal 43.8 13 0.00028 30.2 1.3 32 27-58 223-259 (318)
291 TIGR03573 WbuX N-acetyl sugar 43.8 59 0.0013 27.2 5.2 43 165-215 300-342 (343)
292 cd06641 STKc_MST3 Catalytic do 43.7 6.1 0.00013 31.2 -0.6 31 28-58 228-258 (277)
293 PF07499 RuvA_C: RuvA, C-termi 43.6 60 0.0013 18.2 4.0 40 170-215 3-42 (47)
294 KOG0583 Serine/threonine prote 43.1 5.8 0.00013 33.5 -0.8 32 27-58 249-280 (370)
295 cd06607 STKc_TAO Catalytic dom 43.0 8.2 0.00018 31.1 0.1 30 29-58 243-272 (307)
296 KOG1954 Endocytosis/signaling 42.7 38 0.00082 28.8 3.8 55 153-212 446-500 (532)
297 KOG0594 Protein kinase PCTAIRE 42.6 9.9 0.00022 31.4 0.5 32 27-58 276-307 (323)
298 cd05604 STKc_SGK3 Catalytic do 42.6 12 0.00027 30.4 1.0 30 28-57 222-255 (325)
299 PLN00138 large subunit ribosom 42.3 1E+02 0.0022 21.3 5.3 43 155-199 5-47 (113)
300 COG5611 Predicted nucleic-acid 42.1 1.2E+02 0.0025 21.1 7.5 73 140-212 10-82 (130)
301 PF09069 EF-hand_3: EF-hand; 42.1 42 0.00092 22.1 3.3 71 92-179 4-75 (90)
302 TIGR02675 tape_meas_nterm tape 41.7 43 0.00094 21.1 3.2 16 164-179 27-42 (75)
303 KOG0665 Jun-N-terminal kinase 41.3 11 0.00023 31.3 0.4 31 28-58 285-315 (369)
304 cd08315 Death_TRAILR_DR4_DR5 D 41.1 1.1E+02 0.0023 20.4 5.3 40 150-197 3-42 (96)
305 cd06648 STKc_PAK_II Catalytic 40.8 9.9 0.00021 30.3 0.2 31 28-58 244-274 (285)
306 COG3763 Uncharacterized protei 39.4 86 0.0019 19.6 4.1 33 164-198 35-67 (71)
307 KOG0605 NDR and related serine 39.2 16 0.00035 32.2 1.3 30 27-57 417-449 (550)
308 KOG0577 Serine/threonine prote 38.8 14 0.0003 33.5 0.8 49 11-59 233-284 (948)
309 cd07852 STKc_MAPK15 Catalytic 38.8 8.1 0.00017 31.6 -0.6 31 28-58 270-300 (337)
310 cd05599 STKc_NDR_like Catalyti 38.7 13 0.00029 30.7 0.7 29 28-57 269-300 (364)
311 PF01885 PTS_2-RNA: RNA 2'-pho 38.7 60 0.0013 24.5 4.1 38 161-200 26-63 (186)
312 PRK01844 hypothetical protein; 38.4 81 0.0018 19.8 3.9 41 155-198 27-67 (72)
313 PF09107 SelB-wing_3: Elongati 38.3 54 0.0012 18.9 3.0 32 164-202 7-38 (50)
314 cd05617 STKc_aPKC_zeta Catalyt 38.2 15 0.00033 30.0 0.9 31 28-58 229-265 (327)
315 cd06917 STKc_NAK1_like Catalyt 38.1 7.5 0.00016 30.6 -0.9 30 28-57 230-259 (277)
316 cd05580 STKc_PKA Catalytic dom 37.9 11 0.00024 30.0 0.0 30 28-57 224-258 (290)
317 cd06654 STKc_PAK1 Catalytic do 37.6 7.8 0.00017 31.1 -0.8 31 28-58 245-275 (296)
318 cd05589 STKc_PKN Catalytic dom 37.6 14 0.0003 30.1 0.6 30 28-57 227-261 (324)
319 cd06634 STKc_TAO2 Catalytic do 37.4 9 0.0002 30.9 -0.5 31 28-58 242-272 (308)
320 cd05610 STKc_MASTL Catalytic d 37.2 11 0.00024 34.5 -0.0 30 28-57 609-638 (669)
321 KOG0585 Ca2+/calmodulin-depend 37.1 15 0.00032 32.2 0.7 32 28-59 347-378 (576)
322 cd08318 Death_NMPP84 Death dom 36.9 1.2E+02 0.0025 19.6 5.9 34 150-183 46-79 (86)
323 cd06647 STKc_PAK_I Catalytic d 36.6 10 0.00022 30.4 -0.4 30 29-58 245-274 (293)
324 cd05609 STKc_MAST Catalytic do 36.4 14 0.00031 29.6 0.5 30 28-57 245-277 (305)
325 cd08784 Death_DRs Death Domain 36.1 1.1E+02 0.0025 19.3 5.8 64 107-183 9-72 (79)
326 cd05587 STKc_cPKC Catalytic do 35.8 18 0.0004 29.4 1.1 30 28-57 227-261 (324)
327 KOG0582 Ste20-like serine/thre 35.7 12 0.00025 32.5 -0.1 28 31-58 271-298 (516)
328 cd06620 PKc_MAPKK_Byr1_like Ca 35.6 11 0.00025 29.8 -0.2 31 28-58 241-271 (284)
329 cd07176 terB tellurite resista 35.3 21 0.00046 23.8 1.2 15 165-179 16-30 (111)
330 PF04876 Tenui_NCP: Tenuivirus 35.2 38 0.00083 24.5 2.4 60 153-221 56-115 (175)
331 cd05629 STKc_NDR_like_fungal C 35.1 16 0.00035 30.4 0.7 29 28-57 278-309 (377)
332 KOG0201 Serine/threonine prote 35.0 12 0.00026 32.1 -0.1 31 28-58 238-268 (467)
333 PRK14981 DNA-directed RNA poly 34.9 77 0.0017 21.7 3.9 28 169-198 80-107 (112)
334 KOG4286 Dystrophin-like protei 34.8 1.4E+02 0.0031 27.8 6.3 95 92-216 471-579 (966)
335 PRK00819 RNA 2'-phosphotransfe 34.8 87 0.0019 23.6 4.4 37 161-199 27-63 (179)
336 cd04411 Ribosomal_P1_P2_L12p R 34.7 1.5E+02 0.0032 20.2 5.7 44 168-218 17-60 (105)
337 cd05583 STKc_MSK_N N-terminal 34.5 18 0.00039 28.7 0.8 31 28-58 238-271 (288)
338 smart00750 KIND kinase non-cat 34.5 11 0.00023 27.4 -0.5 32 29-60 141-172 (176)
339 cd06614 STKc_PAK Catalytic dom 33.9 15 0.00032 29.1 0.2 31 28-58 245-275 (286)
340 PRK10236 hypothetical protein; 32.0 2.6E+02 0.0056 22.1 8.1 108 92-201 21-144 (237)
341 PHA02105 hypothetical protein 31.8 1.1E+02 0.0024 18.2 3.5 49 167-215 4-55 (68)
342 cd05598 STKc_LATS Catalytic do 31.6 23 0.00049 29.6 1.0 29 28-57 274-305 (376)
343 PRK09430 djlA Dna-J like membr 31.1 89 0.0019 25.1 4.2 13 206-218 109-121 (267)
344 PF09068 EF-hand_2: EF hand; 30.9 1.9E+02 0.0042 20.3 7.5 67 150-216 40-124 (127)
345 KOG0578 p21-activated serine/t 30.8 23 0.00051 31.3 0.9 40 18-58 489-528 (550)
346 cd05632 STKc_GRK5 Catalytic do 30.6 18 0.00039 28.8 0.2 31 28-58 231-266 (285)
347 PF08414 NADPH_Ox: Respiratory 29.5 1.8E+02 0.0039 19.6 7.5 63 150-220 29-95 (100)
348 COG4802 FtrB Ferredoxin-thiore 29.4 1.4E+02 0.0031 20.1 4.2 37 2-41 3-39 (110)
349 cd06659 STKc_PAK6 Catalytic do 29.2 15 0.00032 29.5 -0.5 31 28-58 246-276 (297)
350 PF12631 GTPase_Cys_C: Catalyt 28.8 1.1E+02 0.0025 18.9 3.7 47 152-198 24-72 (73)
351 KOG1035 eIF-2alpha kinase GCN2 28.4 31 0.00068 33.8 1.4 31 27-57 845-875 (1351)
352 KOG0871 Class 2 transcription 28.4 1.5E+02 0.0032 21.5 4.4 71 103-183 9-82 (156)
353 smart00513 SAP Putative DNA-bi 28.3 96 0.0021 16.0 4.4 18 167-184 3-20 (35)
354 cd05621 STKc_ROCK2 Catalytic d 28.0 20 0.00043 30.0 0.0 31 28-58 277-309 (370)
355 KOG0719 Molecular chaperone (D 27.9 3.1E+02 0.0066 21.8 6.3 58 133-200 108-166 (264)
356 TIGR01639 P_fal_TIGR01639 Plas 27.8 1.4E+02 0.0031 17.9 3.9 32 165-198 7-38 (61)
357 COG1460 Uncharacterized protei 27.4 1.1E+02 0.0024 21.1 3.5 29 169-199 81-109 (114)
358 PF04157 EAP30: EAP30/Vps36 fa 27.3 2.7E+02 0.0059 21.5 6.3 49 171-219 61-127 (223)
359 PF09336 Vps4_C: Vps4 C termin 27.2 92 0.002 18.8 2.9 25 167-193 29-53 (62)
360 cd05625 STKc_LATS1 Catalytic d 27.1 26 0.00057 29.3 0.6 31 27-58 277-310 (382)
361 COG5562 Phage envelope protein 26.9 47 0.001 23.7 1.7 47 165-217 54-100 (137)
362 PLN00181 protein SPA1-RELATED; 26.8 17 0.00037 34.0 -0.7 32 27-58 239-270 (793)
363 KOG0616 cAMP-dependent protein 26.5 1E+02 0.0022 25.5 3.7 31 27-57 266-301 (355)
364 KOG4629 Predicted mechanosensi 26.5 1.9E+02 0.0041 27.0 5.8 62 150-220 403-464 (714)
365 PRK06402 rpl12p 50S ribosomal 26.4 2.2E+02 0.0047 19.5 5.5 30 167-198 16-45 (106)
366 cd05592 STKc_nPKC_theta_delta 26.3 23 0.00051 28.7 0.2 31 28-58 222-253 (316)
367 KOG1954 Endocytosis/signaling 26.1 1.4E+02 0.0031 25.5 4.6 29 150-178 476-504 (532)
368 TIGR00135 gatC glutamyl-tRNA(G 25.7 1.6E+02 0.0034 19.2 4.1 28 168-197 1-28 (93)
369 KOG4717 Serine/threonine prote 25.3 32 0.00069 30.7 0.8 30 28-57 245-274 (864)
370 cd05626 STKc_LATS2 Catalytic d 25.2 21 0.00046 29.9 -0.3 30 28-57 278-309 (381)
371 cd07316 terB_like_DjlA N-termi 24.3 2.1E+02 0.0046 18.7 5.2 9 165-173 13-21 (106)
372 PF02037 SAP: SAP domain; Int 24.3 1.2E+02 0.0026 15.8 4.4 18 167-184 3-20 (35)
373 cd05613 STKc_MSK1_N N-terminal 24.3 30 0.00064 27.4 0.4 31 28-58 238-273 (290)
374 PF08328 ASL_C: Adenylosuccina 24.2 2.5E+02 0.0054 19.5 6.6 47 106-183 53-99 (115)
375 PF10437 Lip_prot_lig_C: Bacte 23.8 1.6E+02 0.0034 18.8 3.8 42 170-215 44-86 (86)
376 KOG2871 Uncharacterized conser 23.4 94 0.002 26.3 3.1 34 88-121 306-340 (449)
377 cd01671 CARD Caspase activatio 23.2 1.9E+02 0.0042 17.8 4.5 48 164-218 24-71 (80)
378 KOG3866 DNA-binding protein of 23.0 84 0.0018 25.9 2.7 49 169-219 225-274 (442)
379 PF08671 SinI: Anti-repressor 23.0 1.1E+02 0.0024 15.6 2.2 24 190-216 4-27 (30)
380 cd06635 STKc_TAO1 Catalytic do 22.9 23 0.0005 28.7 -0.5 30 29-58 253-282 (317)
381 cd05616 STKc_cPKC_beta Catalyt 22.7 40 0.00087 27.3 0.9 32 27-58 226-262 (323)
382 cd05627 STKc_NDR2 Catalytic do 22.7 34 0.00074 28.3 0.5 29 28-57 266-297 (360)
383 KOG0506 Glutaminase (contains 22.4 2.5E+02 0.0054 24.9 5.4 61 155-217 90-158 (622)
384 KOG0592 3-phosphoinositide-dep 22.4 33 0.00072 30.5 0.4 31 27-57 312-342 (604)
385 KOG0574 STE20-like serine/thre 22.3 20 0.00043 29.5 -0.9 29 30-58 260-288 (502)
386 PRK00034 gatC aspartyl/glutamy 22.3 2E+02 0.0043 18.7 4.1 30 167-198 2-31 (95)
387 cd05602 STKc_SGK1 Catalytic do 22.3 42 0.00092 27.2 1.0 31 27-57 221-255 (325)
388 TIGR02787 codY_Gpos GTP-sensin 22.0 1.3E+02 0.0029 23.9 3.5 36 86-124 178-213 (251)
389 cd08324 CARD_NOD1_CARD4 Caspas 21.9 2.4E+02 0.0052 18.4 4.9 48 164-218 26-73 (85)
390 PF07492 Trehalase_Ca-bi: Neut 21.6 31 0.00066 17.6 -0.0 17 193-209 3-19 (30)
391 PTZ00266 NIMA-related protein 21.4 31 0.00067 33.3 -0.0 30 28-57 270-299 (1021)
392 cd05603 STKc_SGK2 Catalytic do 21.4 42 0.00092 27.1 0.8 30 28-57 222-255 (321)
393 KOG0662 Cyclin-dependent kinas 21.3 24 0.00051 26.9 -0.7 30 28-57 258-287 (292)
394 cd00086 homeodomain Homeodomai 21.2 1.7E+02 0.0038 16.5 5.4 38 151-197 13-50 (59)
395 PF00690 Cation_ATPase_N: Cati 20.8 2.1E+02 0.0045 17.2 4.0 31 153-183 6-36 (69)
396 PF01988 VIT1: VIT family; In 20.7 1.9E+02 0.0042 22.2 4.3 62 136-203 50-111 (213)
397 PTZ00283 serine/threonine prot 20.6 30 0.00066 30.4 -0.2 31 28-58 272-302 (496)
398 KOG3442 Uncharacterized conser 20.3 2.8E+02 0.0061 19.5 4.4 44 103-168 52-95 (132)
399 PF10579 Rapsyn_N: Rapsyn N-te 20.2 59 0.0013 20.9 1.0 15 5-19 26-40 (80)
400 PRK11511 DNA-binding transcrip 20.2 3.1E+02 0.0067 19.0 6.1 17 204-220 85-101 (127)
401 smart00540 LEM in nuclear memb 20.0 1.3E+02 0.0029 16.8 2.4 19 167-185 5-23 (44)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=151.16 Aligned_cols=129 Identities=30% Similarity=0.513 Sum_probs=114.8
Q ss_pred ccHHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCc-chhhhhhhc-------CHHHHHHHHhh---cCCCHHHHHH
Q 027506 88 WDEKSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSF-EDEELPQKL-------GSAELSWLFEE---KEPSLEEVKE 155 (222)
Q Consensus 88 ~~~~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~-e~~~~~~~~-------d~~ef~~~~~~---~~~~~~~l~~ 155 (222)
.+.++++++|..+| +++|.|+..+|..+++.+|+.++. ++.+++..+ ++.+|+.++.. .....++++.
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~ 96 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELRE 96 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHH
Confidence 34448999999999 999999999999999999998874 466666655 57899998864 4567899999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 156 AFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 156 ~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
||+.||.|++|+|+..+|+.+++.+|.. +++++++.++..+|.|+||.|+|++|+..+...
T Consensus 97 aF~~fD~d~dG~Is~~eL~~vl~~lge~--~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 97 AFKLFDKDHDGYISIGELRRVLKSLGER--LSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred HHHHhCCCCCceecHHHHHHHHHhhccc--CCHHHHHHHHHhcCCCCCceEeHHHHHHHHhcc
Confidence 9999999999999999999999999977 999999999999999999999999999988754
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.88 E-value=7.8e-22 Score=144.83 Aligned_cols=126 Identities=38% Similarity=0.577 Sum_probs=111.5
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCc-chhhhhhhc--------CHHHHHHHHhhcC-------CCHHHH
Q 027506 91 KSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSF-EDEELPQKL--------GSAELSWLFEEKE-------PSLEEV 153 (222)
Q Consensus 91 ~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~-e~~~~~~~~--------d~~ef~~~~~~~~-------~~~~~l 153 (222)
.+++++|..+| +++|.|+..||..+++.+|..++. ++..++..+ ++++|+.++.... .....+
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el 87 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEEL 87 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHH
Confidence 37899999999 999999999999999999999874 467777665 4679999886431 135589
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 154 KEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 154 ~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
+.||+.||+|++|+||..||+.+|..+|.+ .+.+++..+++.+|.|+||.|+|++|+.+|...
T Consensus 88 ~eaF~~fD~d~~G~Is~~el~~~l~~lg~~--~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 88 KEAFRVFDKDGDGFISASELKKVLTSLGEK--LTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred HHHHHHHccCCCCcCcHHHHHHHHHHhCCc--CCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 999999999999999999999999999987 889999999999999999999999999998753
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=7.6e-19 Score=124.60 Aligned_cols=125 Identities=26% Similarity=0.408 Sum_probs=111.1
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCc-chhhhhhhc--------CHHHHHHHHhh---cCCCHHHHHHHHH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSF-EDEELPQKL--------GSAELSWLFEE---KEPSLEEVKEAFD 158 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~-e~~~~~~~~--------d~~ef~~~~~~---~~~~~~~l~~~F~ 158 (222)
+++..|..+| +++|+|+.+||..+++.+|+.+.+ ++.+++..+ .+++|...+.. ...+.+.++.+|+
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afr 113 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFR 113 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 8899999999 999999999999999999999874 356666544 57899887643 2448899999999
Q ss_pred HhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 159 VFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 159 ~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
.+|-|++|.|+..+|+.+...+|.+ ++++++.+++.++|.++||.|+-+||..+|++.
T Consensus 114 l~D~D~~Gkis~~~lkrvakeLgen--ltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 114 LFDDDKTGKISQRNLKRVAKELGEN--LTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cccccCCCCcCHHHHHHHHHHhCcc--ccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 9999999999999999999999965 999999999999999999999999999999763
No 4
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.78 E-value=5.4e-18 Score=119.45 Aligned_cols=130 Identities=22% Similarity=0.345 Sum_probs=114.6
Q ss_pred CccHHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCc-chhhhhhh----cCHHHHHHHHhhc---CCCHHHHHHHH
Q 027506 87 NWDEKSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSF-EDEELPQK----LGSAELSWLFEEK---EPSLEEVKEAF 157 (222)
Q Consensus 87 ~~~~~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~-e~~~~~~~----~d~~ef~~~~~~~---~~~~~~l~~~F 157 (222)
..++++++++|..+| |+||.|..++|+..+..+|..++. ++..++.. ++|--|+.++.++ ..+++.+..||
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF 107 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAF 107 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 345669999999999 999999999999999999998764 35555554 5788899888653 56688999999
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 158 DVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 158 ~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
+.||.+++|.|..+.|+.+|...|.+ +++++|+++++.+-.+..|.|+|..|+.+++..
T Consensus 108 ~~FD~~~~G~I~~d~lre~Ltt~gDr--~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ithG 166 (171)
T KOG0031|consen 108 KTFDDEGSGKIDEDYLRELLTTMGDR--FTDEEVDEMYREAPIDKKGNFDYKAFTYIITHG 166 (171)
T ss_pred HhcCccCCCccCHHHHHHHHHHhccc--CCHHHHHHHHHhCCcccCCceeHHHHHHHHHcc
Confidence 99999999999999999999999977 999999999999999999999999999999853
No 5
>PTZ00183 centrin; Provisional
Probab=99.75 E-value=6.1e-17 Score=119.52 Aligned_cols=125 Identities=27% Similarity=0.414 Sum_probs=107.9
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCc-chhhhhhh--------cCHHHHHHHHhh---cCCCHHHHHHHH
Q 027506 91 KSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSF-EDEELPQK--------LGSAELSWLFEE---KEPSLEEVKEAF 157 (222)
Q Consensus 91 ~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~-e~~~~~~~--------~d~~ef~~~~~~---~~~~~~~l~~~F 157 (222)
+++..+|..+| +++|.|+.+||..+++.+|..++. .+..++.. +++.+|..++.. .......++.+|
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 38889999999 999999999999999999876553 35666655 456789886643 345567899999
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 158 DVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 158 ~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
+.+|.+++|.|+.+||..++...|.+ ++.+++..++..+|.+++|.|+|++|+.++..
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~~~~~--l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKELGET--ITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHhCCC--CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 99999999999999999999998865 89999999999999999999999999999875
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.75 E-value=5.5e-17 Score=118.44 Aligned_cols=125 Identities=34% Similarity=0.526 Sum_probs=106.7
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCc-chhhhhhh--------cCHHHHHHHHhhc---CCCHHHHHHHH
Q 027506 91 KSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSF-EDEELPQK--------LGSAELSWLFEEK---EPSLEEVKEAF 157 (222)
Q Consensus 91 ~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~-e~~~~~~~--------~d~~ef~~~~~~~---~~~~~~l~~~F 157 (222)
+.++..|..+| +++|.|+.+||..++..++..+.. .+..++.. +++++|..++... ......+..+|
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 37889999999 999999999999999988876653 35666654 4567899877532 34456789999
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 158 DVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 158 ~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
+.+|.+++|.|+.+++..++...|.+ ++.+.+..++..+|.+++|.|+|+||+.++..
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHHHCCC--CCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 99999999999999999999998865 88999999999999999999999999998764
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.74 E-value=6.8e-17 Score=112.04 Aligned_cols=124 Identities=23% Similarity=0.343 Sum_probs=106.0
Q ss_pred HHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcc-hhh----------hhhhcCHHHHHHHHhh-----cCCCHHH
Q 027506 90 EKSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFE-DEE----------LPQKLGSAELSWLFEE-----KEPSLEE 152 (222)
Q Consensus 90 ~~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e-~~~----------~~~~~d~~ef~~~~~~-----~~~~~~~ 152 (222)
..+++++|..|| .+||+|+..++..+||.+|.+|+.. +.+ -++.++|++|+-+++. ..-..+.
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 358999999999 9999999999999999999999842 222 3356789999987753 2445677
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 153 VKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 153 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
..+..+.||++++|.|...||+++|..+|.. +++++++.++.-.. |++|.|+|+.|++.+.
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvLttlGek--l~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVLTTLGEK--LTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHHHHHHhh--ccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 8889999999999999999999999999977 99999999999773 6689999999998765
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.67 E-value=2e-15 Score=112.83 Aligned_cols=121 Identities=20% Similarity=0.357 Sum_probs=105.2
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCc--chhhhhhh--------cCHHHHHHHHhhcCCCHHHHHHHHHHh
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSF--EDEELPQK--------LGSAELSWLFEEKEPSLEEVKEAFDVF 160 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~--e~~~~~~~--------~d~~ef~~~~~~~~~~~~~l~~~F~~~ 160 (222)
++...|...| +++|.|+.+||..+|...+.++-. .++-|+.. +++.||.+++.. ...++.+|+.|
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~----i~~Wr~vF~~~ 133 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY----INQWRNVFRTY 133 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH----HHHHHHHHHhc
Confidence 6789999999 999999999999999876654421 25555554 467899999876 66899999999
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 161 DENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 161 D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
|+|++|.|+..||+.+|..+|.. ++++-.+.+++.+|..++|.|.|++|+.++...
T Consensus 134 D~D~SG~I~~sEL~~Al~~~Gy~--Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 134 DRDRSGTIDSSELRQALTQLGYR--LSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred ccCCCCcccHHHHHHHHHHcCcC--CCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 99999999999999999999988 999999999999998889999999999987653
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.66 E-value=1.1e-15 Score=114.39 Aligned_cols=130 Identities=26% Similarity=0.367 Sum_probs=98.6
Q ss_pred ccHHHHHHHhhhcc-C-CCCcccHHHHHHHHHHcCCCCC-cchhhhhhh------cCHHHHHHHHh---hcCCCHHHHHH
Q 027506 88 WDEKSKQASFNKKE-H-DDESLSRDEVEMVMRKLTLFCS-FEDEELPQK------LGSAELSWLFE---EKEPSLEEVKE 155 (222)
Q Consensus 88 ~~~~~l~~~F~~~D-~-~~G~i~~~el~~~l~~~~~~~~-~e~~~~~~~------~d~~ef~~~~~---~~~~~~~~l~~ 155 (222)
.+.+.|...|.++| + ++|.|+.+||..+.. +..++- ..+-+++.. ++|.+|+..+. ......++++-
T Consensus 30 ~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~f 108 (187)
T KOG0034|consen 30 NEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRF 108 (187)
T ss_pred HHHHHHHHHHHHhccccccCccCHHHHHHHHH-HhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHH
Confidence 44558899999999 8 999999999999883 333332 112222222 78889998775 33445569999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCC-CCCCCH----HHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 156 AFDVFDENKDGFIDAMELQRLLCILGL-KEGFEL----ENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 156 ~F~~~D~d~~G~I~~~el~~~l~~~~~-~~~~~~----~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
||+.||.+++|+|+++|+..++..+-. ....++ +.++.+|.++|.|+||+|+|+||++++.+.
T Consensus 109 aF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 109 AFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 999999999999999999999998632 211113 345678899999999999999999998765
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.53 E-value=1.9e-13 Score=110.89 Aligned_cols=121 Identities=25% Similarity=0.372 Sum_probs=106.0
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCC-CCcc-hhhhhhhc--------CHHHHHHHHhhcCCCHHHHHHHHHHh
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLF-CSFE-DEELPQKL--------GSAELSWLFEEKEPSLEEVKEAFDVF 160 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~-~~~e-~~~~~~~~--------d~~ef~~~~~~~~~~~~~l~~~F~~~ 160 (222)
.++.+|+.+| +++|.++..++.+++..+... +..+ .+.++..+ |+.||...+..+ +.++...|+.+
T Consensus 15 r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~---E~~l~~~F~~i 91 (463)
T KOG0036|consen 15 RIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK---ELELYRIFQSI 91 (463)
T ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh---HHHHHHHHhhh
Confidence 7889999999 999999999999999998776 3322 55666654 567888887654 56899999999
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 161 DENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 161 D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
|.+++|.|+..|+...|+.+|.+ +++++++.+++.+|+++.+.|+++||...+.-
T Consensus 92 D~~hdG~i~~~Ei~~~l~~~gi~--l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 92 DLEHDGKIDPNEIWRYLKDLGIQ--LSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred ccccCCccCHHHHHHHHHHhCCc--cCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 99999999999999999999988 99999999999999999999999999888754
No 11
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.50 E-value=9.3e-14 Score=91.94 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcC-CCCCcccHHHHHHHHHH-hCCCCCCCH-HHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 151 EEVKEAFDVFDE-NKDGFIDAMELQRLLCI-LGLKEGFEL-ENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 151 ~~l~~~F~~~D~-d~~G~I~~~el~~~l~~-~~~~~~~~~-~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
..++.+|+.||+ +++|+|+..||+.++.. +|.. +++ ++++++++.+|.|+||.|+|+||+.+|.+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~--ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHL--LKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh--ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 468999999999 99999999999999998 7755 777 899999999999999999999999998764
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.50 E-value=1.4e-13 Score=86.60 Aligned_cols=64 Identities=44% Similarity=0.735 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCC--CCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 027506 152 EVKEAFDVFDENKDGFIDAMELQRLLCILGLKE--GFELENCKKMIKTFDKNGDGRIDFKEFVKFM 215 (222)
Q Consensus 152 ~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~--~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l 215 (222)
+++.+|+.+|.|++|+|+.+||..++..++.+. ...++.+..++..+|.|+||.|+|+||+++|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999998641 1233456666999999999999999999876
No 13
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.42 E-value=8.5e-13 Score=99.03 Aligned_cols=126 Identities=20% Similarity=0.281 Sum_probs=82.2
Q ss_pred HHHHHhhhcc--CCCCcccHHHHHHHHHHcCCCCCcc--hhhhhhhc--------CHHHHHHHHh--hcCCCHHHHHHHH
Q 027506 92 SKQASFNKKE--HDDESLSRDEVEMVMRKLTLFCSFE--DEELPQKL--------GSAELSWLFE--EKEPSLEEVKEAF 157 (222)
Q Consensus 92 ~l~~~F~~~D--~~~G~i~~~el~~~l~~~~~~~~~e--~~~~~~~~--------d~~ef~~~~~--~~~~~~~~l~~~F 157 (222)
+++..|..+- ..+|.++.++|+.++.........+ +..+++.+ +|.||+..++ .+....++++.+|
T Consensus 27 ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F 106 (193)
T KOG0044|consen 27 EIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAF 106 (193)
T ss_pred HHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhh
Confidence 4445554444 2356666666666665554322211 23333332 3344544433 1244467889999
Q ss_pred HHhcCCCCCcccHHHHHHHHHHh----CC-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 158 DVFDENKDGFIDAMELQRLLCIL----GL-----KEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 158 ~~~D~d~~G~I~~~el~~~l~~~----~~-----~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
+.||.||+|+||++|+..++... |. ......+-+..+|+.+|.|+||.||++||......
T Consensus 107 ~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 107 RLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred eeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 99999999999999999888753 32 11234567889999999999999999999987654
No 14
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.41 E-value=1.5e-12 Score=86.23 Aligned_cols=67 Identities=28% Similarity=0.453 Sum_probs=60.5
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-----hCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 151 EEVKEAFDVFD-ENKDG-FIDAMELQRLLCI-----LGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 151 ~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
..++.+|+.|| ++|+| +|+.+||+.+|.. +|.. .++++++++++.+|.|++|.|+|++|+.++....
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~--~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEI--KEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCC--CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 36899999998 89999 6999999999998 7865 6888999999999999999999999999987643
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.32 E-value=1.2e-11 Score=83.38 Aligned_cols=67 Identities=24% Similarity=0.445 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH-----hCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 150 LEEVKEAFDVFDE-NK-DGFIDAMELQRLLCI-----LGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 150 ~~~l~~~F~~~D~-d~-~G~I~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
...++.+|..||. |+ +|.|+..||+.++.. +|.. .++++++.++..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~--~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQ--KDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcc--ccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3478999999997 97 799999999999986 4544 688999999999999999999999999988753
No 16
>PLN02964 phosphatidylserine decarboxylase
Probab=99.31 E-value=2.2e-11 Score=106.64 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=88.0
Q ss_pred ccHHHHHHHhhhcc-CCCCcccHHHHHHHHHHcC-CCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCC
Q 027506 88 WDEKSKQASFNKKE-HDDESLSRDEVEMVMRKLT-LFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKD 165 (222)
Q Consensus 88 ~~~~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~-~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~ 165 (222)
.+.++++++|..+| +++|.+ +..+++.+| ..++.+ ....++.+|+.+|.|++
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~----------------------e~~fi~~mf~~~D~Dgd 193 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVET----------------------ERSFARRILAIVDYDED 193 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHH----------------------HHHHHHHHHHHhCCCCC
Confidence 34448899999999 999997 888899999 466611 01237899999999999
Q ss_pred CcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 166 GFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 166 G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
|.|+.+||..++..++.. .+++++.++|+.+|.|++|.|+++||..+|...
T Consensus 194 G~IdfdEFl~lL~~lg~~--~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 194 GQLSFSEFSDLIKAFGNL--VAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CeEcHHHHHHHHHHhccC--CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999988754 688999999999999999999999999999874
No 17
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.31 E-value=1.3e-11 Score=82.90 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=57.1
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHHh-CC--CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 151 EEVKEAFDVFD-ENKDG-FIDAMELQRLLCIL-GL--KEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 151 ~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~~-~~--~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
..++.+|+.|| .||+| +||..||+.++... +. ....++.++++++..+|.|+||.|+|+||+.++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 36788999999 78998 59999999999762 21 111477899999999999999999999999998764
No 18
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.29 E-value=2e-11 Score=80.90 Aligned_cols=66 Identities=21% Similarity=0.428 Sum_probs=58.9
Q ss_pred HHHHHHHHhcC-CC-CCcccHHHHHHHHHH---hCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 152 EVKEAFDVFDE-NK-DGFIDAMELQRLLCI---LGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 152 ~l~~~F~~~D~-d~-~G~I~~~el~~~l~~---~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
.+..+|..||. +| +|+|+.+||+.++.. +|.+ ++++++.++++.+|.|++|.|+|+||+.+|.+..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k--~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSK--LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 57889999998 77 899999999999973 5765 8999999999999999999999999999987643
No 19
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.29 E-value=2.3e-11 Score=81.64 Aligned_cols=69 Identities=29% Similarity=0.483 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-hCCC--CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 150 LEEVKEAFDVFD-ENKDG-FIDAMELQRLLCI-LGLK--EGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 150 ~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-~~~~--~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
...++.+|+.|| .+++| .|+..||+.+|+. +|.. ...++++++.++..+|.+++|.|+|++|+.++.+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 347899999997 99999 5999999999985 5421 12578899999999999999999999999998764
No 20
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.26 E-value=3.5e-11 Score=88.28 Aligned_cols=69 Identities=43% Similarity=0.643 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~ 220 (222)
...++.+|+.||.+++|+|+..||..+++.+|.+ .++.++..++..+|.+++|.|++++|+.+|.+...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~--~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN--PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 4578999999999999999999999999999987 78999999999999999999999999999987654
No 21
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.25 E-value=3.2e-11 Score=75.85 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 154 KEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 154 ~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
+.+|+.+|++++|.|+.+|+..++...| .+.+.+..++..+|.+++|.|+|++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g----~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG----LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC----CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5689999999999999999999999876 467889999999999999999999999988654
No 22
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.24 E-value=5.2e-11 Score=80.51 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
...++.+|+.||.+++|.|+.++++.++...| ++.+++..++..+|.+++|.|+|+||+.++...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 45789999999999999999999999999865 577899999999999999999999999988753
No 23
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.21 E-value=8.3e-11 Score=78.21 Aligned_cols=70 Identities=27% Similarity=0.452 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcC--CCCCcccHHHHHHHHHH-hCCC--CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 150 LEEVKEAFDVFDE--NKDGFIDAMELQRLLCI-LGLK--EGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 150 ~~~l~~~F~~~D~--d~~G~I~~~el~~~l~~-~~~~--~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
...++.+|..||+ +++|.|+..+|..++.. +|.+ ...+.+++..++..+|.+++|.|+|++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4568899999999 89999999999999986 5533 124688999999999999999999999999988754
No 24
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.21 E-value=1.1e-10 Score=77.51 Aligned_cols=70 Identities=21% Similarity=0.350 Sum_probs=58.2
Q ss_pred HHHHHHHHHH-hcCCCCC-cccHHHHHHHHHHhCC---CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 150 LEEVKEAFDV-FDENKDG-FIDAMELQRLLCILGL---KEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 150 ~~~l~~~F~~-~D~d~~G-~I~~~el~~~l~~~~~---~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
...+..+|+. +|.+|+| +|+.+||+.++..... ....++.+++++++.+|.|+||.|+|+||+.+|....
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3468899999 7888976 9999999999987521 0125678999999999999999999999999987653
No 25
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.18 E-value=4.1e-10 Score=92.47 Aligned_cols=125 Identities=20% Similarity=0.297 Sum_probs=91.6
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHc-CCCCC-c----------c-----hhhhhhhcCHH----H-HHHHHhhcCC
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKL-TLFCS-F----------E-----DEELPQKLGSA----E-LSWLFEEKEP 148 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~-~~~~~-~----------e-----~~~~~~~~d~~----e-f~~~~~~~~~ 148 (222)
+|...|+.+| .++|.|+......++... |+..+ . + -...++.++.+ + =..++..-+.
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr 544 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYR 544 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHh
Confidence 6678899999 999999999999998863 44433 0 0 01111111111 1 1112222234
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC--CCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 149 SLEEVKEAFDVFDENKDGFIDAMELQRLLCILG--LKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 149 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~--~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
....+..+|+.+|.|++|.||.+||+.++.-++ .+..++++++.++...+|.|+||.|++.||+..++
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 456788999999999999999999999998664 23348899999999999999999999999998875
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.17 E-value=1.7e-10 Score=69.44 Aligned_cols=53 Identities=40% Similarity=0.781 Sum_probs=48.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 164 KDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
.+|.|+.++|+.+|..+|.+. ++++++..++..+|.+++|.|+|+||+.+|.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~-~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKD-LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSS-SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCC-CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998888543 78899999999999999999999999999976
No 27
>PF14658 EF-hand_9: EF-hand domain
Probab=99.12 E-value=3.6e-10 Score=69.34 Aligned_cols=64 Identities=27% Similarity=0.469 Sum_probs=58.4
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCC-CceeHHHHHHHHHhhh
Q 027506 155 EAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGD-GRIDFKEFVKFMEKSF 219 (222)
Q Consensus 155 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~d-g~I~~~eF~~~l~~~~ 219 (222)
.+|..||++++|.|....+...|+.++.+ ..++.+++.+..++|+++. |.|+++.|+.+|+.++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~-~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~wi 66 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR-SPEESELQDLINELDPEGRDGSVNFDTFLAIMRDWI 66 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC-CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHhC
Confidence 47999999999999999999999999872 2688899999999999987 9999999999999864
No 28
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.12 E-value=4.8e-10 Score=68.71 Aligned_cols=61 Identities=46% Similarity=0.778 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 027506 153 VKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFM 215 (222)
Q Consensus 153 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l 215 (222)
+..+|..+|.+++|.|+..++..++..++.+ .+.+.+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEG--LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC--CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999866 788999999999999999999999999875
No 29
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.11 E-value=4.5e-10 Score=81.69 Aligned_cols=68 Identities=35% Similarity=0.654 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~ 220 (222)
.++++.+|..||+|++|.|++.+|..+++.+|.+ .++.++..++..+|. +.|.|+|.+|+.+|....+
T Consensus 19 i~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~--~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSLGFN--PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCC--CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 3578889999999999999999999999988877 788888899998888 7888999999888877653
No 30
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.11 E-value=4e-10 Score=78.23 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
...+..+|..+|.|++|.|+.+||..+. ++ ..+..+..++..+|.|+||.||++||+.++.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~----~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD----PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc----chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4578999999999999999999999876 22 3467789999999999999999999999983
No 31
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.10 E-value=3.4e-10 Score=70.96 Aligned_cols=65 Identities=28% Similarity=0.372 Sum_probs=54.2
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
.|+.+|..+| +++|.|+.+||..++..++...+. .. ....+..+|+.+|+|++|.|+.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~--~~-------------------~~~~~~~~~~~~D~d~dG~i~~ 59 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSD--EE-------------------SDEMIDQIFREFDTDGDGRISF 59 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTH--HH-------------------HHHHHHHHHHHHTTTSSSSEEH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccH--HH-------------------HHHHHHHHHHHhCCCCcCCCcH
Confidence 3789999999 999999999999999998876541 00 1235778899999999999999
Q ss_pred HHHHHHH
Q 027506 171 MELQRLL 177 (222)
Q Consensus 171 ~el~~~l 177 (222)
+||..++
T Consensus 60 ~Ef~~~~ 66 (66)
T PF13499_consen 60 DEFLNFM 66 (66)
T ss_dssp HHHHHHH
T ss_pred HHHhccC
Confidence 9998864
No 32
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.09 E-value=5.1e-10 Score=78.69 Aligned_cols=99 Identities=23% Similarity=0.338 Sum_probs=79.3
Q ss_pred HHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHH
Q 027506 95 ASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMEL 173 (222)
Q Consensus 95 ~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el 173 (222)
++-..+. +|.|.+|.++|..++.-+.-..+ ..-++.-||+.+|-|++++|..++|
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~AP------------------------rdlK~~YAFkIYDfd~D~~i~~~DL 130 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAP------------------------RDLKAKYAFKIYDFDGDEFIGHDDL 130 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhCh------------------------HHhhhhheeEEeecCCCCcccHHHH
Confidence 4445566 89999999999888775433222 2346788999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHH----HHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 174 QRLLCILGLKEGFELENC----KKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~----~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
...+.++... .++++++ +.++.+.|.||||++++.||-+++.+.
T Consensus 131 ~~~l~~lTr~-eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 131 EKTLTSLTRD-ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 9999987543 3777765 578888999999999999999998764
No 33
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.08 E-value=2.1e-09 Score=80.85 Aligned_cols=107 Identities=25% Similarity=0.388 Sum_probs=86.5
Q ss_pred CcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhh---cCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC
Q 027506 105 ESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEE---KEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILG 181 (222)
Q Consensus 105 G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~ 181 (222)
...+..|++.+++.+....+. ..++.++|..++.. ......-...+|+.||.|++|.|+..||..++....
T Consensus 21 t~f~~~ei~~~Yr~Fk~~cP~------G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~ 94 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNECPS------GRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS 94 (193)
T ss_pred cCCCHHHHHHHHHHhcccCCC------CccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc
Confidence 357789999999987665542 45666778877754 244566788999999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 182 LKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
. +..++.+.-.|+.+|.|+||.|+++|+++++...+
T Consensus 95 r--Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~ 130 (193)
T KOG0044|consen 95 R--GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIY 130 (193)
T ss_pred C--CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHH
Confidence 3 36778899999999999999999999999987654
No 34
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=8.5e-10 Score=78.85 Aligned_cols=70 Identities=36% Similarity=0.601 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhc
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFVE 221 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~~ 221 (222)
.+.++.+|..||.+++|+|+.+||+-++..+|+. ...+++..++..+|.++.|.|+|++|+..|+..+.+
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE--~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e 101 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFE--PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE 101 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC--cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999987 678899999999999999999999999999887653
No 35
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.97 E-value=3.2e-09 Score=70.43 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCC--CCCcccHHHHHHHHH-HhCCCCCCC----HHHHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 151 EEVKEAFDVFDEN--KDGFIDAMELQRLLC-ILGLKEGFE----LENCKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 151 ~~l~~~F~~~D~d--~~G~I~~~el~~~l~-~~~~~~~~~----~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
..+...|..|+.. ++|.|+.+||+.++. .+|.. ++ ++++..++..+|.+++|.|+|++|+.++....
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~--~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF--LKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh--hccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3578899999866 489999999999997 45533 44 89999999999999999999999999988754
No 36
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.96 E-value=1.3e-08 Score=76.72 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=78.5
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
.-+.+|..+| |++|+|+..||+.+|..+|+..+ .+.+..+++.||..++|.|..
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Ls-------------------------pq~~~~lv~kyd~~~~g~i~F 179 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLS-------------------------PQFYNLLVRKYDRFGGGRIDF 179 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCC-------------------------HHHHHHHHHHhccccCCceeH
Confidence 5678999999 99999999999999999999888 445677889999888999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCC--ceeHHHHHHHHH
Q 027506 171 MELQRLLCILGLKEGFELENCKKMIKTFDKNGDG--RIDFKEFVKFME 216 (222)
Q Consensus 171 ~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg--~I~~~eF~~~l~ 216 (222)
+++.++|..+ ..+.+.|+..|.+..| .|+|++|+.+..
T Consensus 180 D~FI~ccv~L--------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 180 DDFIQCCVVL--------QRLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHHHHHHH--------HHHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 9999998654 3466889999998877 588999987653
No 37
>PTZ00183 centrin; Provisional
Probab=98.90 E-value=1.1e-08 Score=75.16 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=62.9
Q ss_pred hcCHHHHHHHHhhc--CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHH
Q 027506 133 KLGSAELSWLFEEK--EPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKE 210 (222)
Q Consensus 133 ~~d~~ef~~~~~~~--~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~e 210 (222)
.++.++|..++... ......+..+|..+|.+++|.|+.+++..++..... .....+.+..+|+.+|.+++|.|+++|
T Consensus 33 ~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~-~~~~~~~l~~~F~~~D~~~~G~i~~~e 111 (158)
T PTZ00183 33 TIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG-ERDPREEILKAFRLFDDDKTGKISLKN 111 (158)
T ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhc-CCCcHHHHHHHHHHhCCCCCCcCcHHH
Confidence 35667887777642 345667888888888888888888888887765321 124567788888888888888888888
Q ss_pred HHHHHHhh
Q 027506 211 FVKFMEKS 218 (222)
Q Consensus 211 F~~~l~~~ 218 (222)
|..++...
T Consensus 112 ~~~~l~~~ 119 (158)
T PTZ00183 112 LKRVAKEL 119 (158)
T ss_pred HHHHHHHh
Confidence 88888643
No 38
>PTZ00184 calmodulin; Provisional
Probab=98.87 E-value=1.3e-08 Score=73.89 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=61.1
Q ss_pred hcCHHHHHHHHhh--cCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHH
Q 027506 133 KLGSAELSWLFEE--KEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKE 210 (222)
Q Consensus 133 ~~d~~ef~~~~~~--~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~e 210 (222)
.++..+|..++.. .......+..+|+.+|.+++|.|+.+++..++...... ....+.+..+|..+|.+++|.|+.++
T Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~~F~~~D~~~~g~i~~~e 105 (149)
T PTZ00184 27 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD-TDSEEEIKEAFKVFDRDGNGFISAAE 105 (149)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC-CcHHHHHHHHHHhhCCCCCCeEeHHH
Confidence 4566788776653 23456678888888888888888888888887654221 13456778888888888888888888
Q ss_pred HHHHHHh
Q 027506 211 FVKFMEK 217 (222)
Q Consensus 211 F~~~l~~ 217 (222)
|..++..
T Consensus 106 ~~~~l~~ 112 (149)
T PTZ00184 106 LRHVMTN 112 (149)
T ss_pred HHHHHHH
Confidence 8887765
No 39
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=9.9e-09 Score=81.53 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=90.6
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCC-cchhhhhhh--------cCHHHHHHHHhhc------------C-
Q 027506 91 KSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCS-FEDEELPQK--------LGSAELSWLFEEK------------E- 147 (222)
Q Consensus 91 ~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~-~e~~~~~~~--------~d~~ef~~~~~~~------------~- 147 (222)
+.|..++..+| +++|.|+..|+..++........ .+...-+.. +.+++|...+... .
T Consensus 77 ~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~ 156 (325)
T KOG4223|consen 77 ERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNE 156 (325)
T ss_pred HHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcH
Confidence 38889999999 99999999999998765322111 111111111 2344555433210 0
Q ss_pred ---CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 148 ---PSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 148 ---~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
.-...-+.-|+.-|.|++|.+|++||...|..-.+ |.+.+=.|.+-+...|.|+||+|+++||+.-|...-
T Consensus 157 ~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~-p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 157 EYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEH-PHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhc-chHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 01123467899999999999999999999987553 446666788999999999999999999998876643
No 40
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.82 E-value=2.6e-08 Score=70.86 Aligned_cols=65 Identities=35% Similarity=0.619 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~ 220 (222)
.+++++||..+|+|++|.|++++|+.++.++|.. .++++++.++++. .|.|+|.-|+.++-.+++
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~--~~d~elDaM~~Ea----~gPINft~FLTmfGekL~ 95 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI--ASDEELDAMMKEA----PGPINFTVFLTMFGEKLN 95 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhc
Confidence 5578999999999999999999999999999977 8899999888876 567888888888766553
No 41
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.76 E-value=4.8e-08 Score=72.48 Aligned_cols=66 Identities=38% Similarity=0.691 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 151 EEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 151 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
..+...|+.||.+.+|+|+..||+.+|..+|.| .+-=-++++++++|-|.||+|+|-||+-+++..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap--QTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP--QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCc--hhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 356789999999999999999999999999976 555568899999999999999999999887754
No 42
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.71 E-value=6.1e-08 Score=65.44 Aligned_cols=63 Identities=14% Similarity=0.275 Sum_probs=54.9
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCccc
Q 027506 91 KSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFID 169 (222)
Q Consensus 91 ~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~ 169 (222)
..++.+|..+| +++|.|+.+|++.+++..|. + ...+..+|..+|.+++|.|+
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~--~-------------------------~~ev~~i~~~~d~~~~g~I~ 62 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL--P-------------------------QTLLAKIWNLADIDNDGELD 62 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC--C-------------------------HHHHHHHHHHhcCCCCCCcC
Confidence 37889999999 99999999999999998664 2 23678899999999999999
Q ss_pred HHHHHHHHHHh
Q 027506 170 AMELQRLLCIL 180 (222)
Q Consensus 170 ~~el~~~l~~~ 180 (222)
.+||..++...
T Consensus 63 ~~eF~~~~~~~ 73 (96)
T smart00027 63 KDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHH
Confidence 99999988743
No 43
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.69 E-value=6.6e-08 Score=60.50 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=52.2
Q ss_pred HHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHH
Q 027506 94 QASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAME 172 (222)
Q Consensus 94 ~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~e 172 (222)
+++|..+| +++|.|+.+|+..+++.+|. + ...+..+|+.+|.+++|.|+.+|
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~-------------------------~~~~~~i~~~~d~~~~g~i~~~e 54 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--P-------------------------RSVLAQIWDLADTDKDGKLDKEE 54 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--C-------------------------HHHHHHHHHHhcCCCCCcCCHHH
Confidence 57899999 99999999999999998775 3 33678899999999999999999
Q ss_pred HHHHHHHh
Q 027506 173 LQRLLCIL 180 (222)
Q Consensus 173 l~~~l~~~ 180 (222)
+..++...
T Consensus 55 f~~~~~~~ 62 (67)
T cd00052 55 FAIAMHLI 62 (67)
T ss_pred HHHHHHHH
Confidence 99888653
No 44
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.68 E-value=1e-07 Score=57.05 Aligned_cols=52 Identities=31% Similarity=0.466 Sum_probs=46.3
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 027506 103 DDESLSRDEVEMVMRKLTLF-CSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCI 179 (222)
Q Consensus 103 ~~G~i~~~el~~~l~~~~~~-~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 179 (222)
.+|.|+.++|..+++.+|.. .+ ...+..+|..+|.+++|.|+.+||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s-------------------------~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLS-------------------------EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSC-------------------------HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCC-------------------------HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888887 66 557899999999999999999999998864
No 45
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.64 E-value=5.7e-08 Score=50.14 Aligned_cols=27 Identities=41% Similarity=0.623 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q 027506 153 VKEAFDVFDENKDGFIDAMELQRLLCI 179 (222)
Q Consensus 153 l~~~F~~~D~d~~G~I~~~el~~~l~~ 179 (222)
++.+|+.||+|++|+|+.+||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 345555555555555555555555543
No 46
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.63 E-value=2.8e-07 Score=61.64 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=55.3
Q ss_pred HHHHHHhhhc-c-CCCC-cccHHHHHHHHHH-cCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCC
Q 027506 91 KSKQASFNKK-E-HDDE-SLSRDEVEMVMRK-LTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDG 166 (222)
Q Consensus 91 ~~l~~~F~~~-D-~~~G-~i~~~el~~~l~~-~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G 166 (222)
+.++++|..+ | +++| .|+..||+.+|+. +|...+. ..+...+..+|+.+|.+++|
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~---------------------~~s~~~v~~i~~~~D~d~~G 67 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDA---------------------QKDADAVDKIMKELDENGDG 67 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccC---------------------CCCHHHHHHHHHHHCCCCCC
Confidence 3788999999 6 8999 5999999999985 5432110 11245788999999999999
Q ss_pred cccHHHHHHHHHHhC
Q 027506 167 FIDAMELQRLLCILG 181 (222)
Q Consensus 167 ~I~~~el~~~l~~~~ 181 (222)
.|+.++|..++..+.
T Consensus 68 ~I~f~eF~~l~~~~~ 82 (92)
T cd05025 68 EVDFQEFVVLVAALT 82 (92)
T ss_pred cCcHHHHHHHHHHHH
Confidence 999999999887653
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.62 E-value=1.7e-07 Score=63.00 Aligned_cols=65 Identities=26% Similarity=0.342 Sum_probs=54.5
Q ss_pred HHHHHhhhcc--CC-CCcccHHHHHHHHHH-----cCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCC
Q 027506 92 SKQASFNKKE--HD-DESLSRDEVEMVMRK-----LTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDEN 163 (222)
Q Consensus 92 ~l~~~F~~~D--~~-~G~i~~~el~~~l~~-----~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d 163 (222)
.++.+|..+| ++ +|.|+.+||+.+++. +|..++ ...+..+|+.+|.+
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s-------------------------~~ei~~~~~~~D~~ 63 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKD-------------------------PMAVDKIMKDLDQN 63 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcccc-------------------------HHHHHHHHHHhCCC
Confidence 7889999998 54 699999999999986 344444 44788899999999
Q ss_pred CCCcccHHHHHHHHHHhC
Q 027506 164 KDGFIDAMELQRLLCILG 181 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~~ 181 (222)
++|.|+.++|..++...+
T Consensus 64 ~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 64 RDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred CCCcCcHHHHHHHHHHHH
Confidence 999999999999988765
No 48
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.62 E-value=7.8e-08 Score=49.65 Aligned_cols=28 Identities=50% Similarity=0.972 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 190 NCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 190 ~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
+++++|+.+|.|+||+|+++||+.+|++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999999875
No 49
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.61 E-value=3.3e-07 Score=61.40 Aligned_cols=69 Identities=26% Similarity=0.322 Sum_probs=53.5
Q ss_pred HHHHHhhhcc--CCCC-cccHHHHHHHHHH-cCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCc
Q 027506 92 SKQASFNKKE--HDDE-SLSRDEVEMVMRK-LTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGF 167 (222)
Q Consensus 92 ~l~~~F~~~D--~~~G-~i~~~el~~~l~~-~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~ 167 (222)
.+.++|..+| +++| +|+.+||+.++.. ++..... ......+..+++.+|.|++|.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~---------------------~~~~~~v~~i~~elD~n~dG~ 69 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSS---------------------QKDPMLVDKIMNDLDSNKDNE 69 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccc---------------------ccCHHHHHHHHHHhCCCCCCC
Confidence 6778899999 5888 5999999999976 3211110 012447889999999999999
Q ss_pred ccHHHHHHHHHHhC
Q 027506 168 IDAMELQRLLCILG 181 (222)
Q Consensus 168 I~~~el~~~l~~~~ 181 (222)
|+.+||..++..+.
T Consensus 70 Idf~EF~~l~~~l~ 83 (93)
T cd05026 70 VDFNEFVVLVAALT 83 (93)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987653
No 50
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.60 E-value=1.9e-07 Score=61.85 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=55.2
Q ss_pred HHHHHhhhcc--CCCCcccHHHHHHHHHH-cCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcc
Q 027506 92 SKQASFNKKE--HDDESLSRDEVEMVMRK-LTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFI 168 (222)
Q Consensus 92 ~l~~~F~~~D--~~~G~i~~~el~~~l~~-~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I 168 (222)
.|+.+|..+| +++|+|+..||+.+++. +|...+. ...+..+++.+|.|++|.|
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~------------------------~~~v~~mi~~~D~d~DG~I 64 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKD------------------------VEGLEEKMKNLDVNQDSKL 64 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccC------------------------HHHHHHHHHHhCCCCCCCC
Confidence 7889999999 48999999999999998 7644431 0368889999999999999
Q ss_pred cHHHHHHHHHHh
Q 027506 169 DAMELQRLLCIL 180 (222)
Q Consensus 169 ~~~el~~~l~~~ 180 (222)
+.+||..++..+
T Consensus 65 ~F~EF~~l~~~l 76 (89)
T cd05022 65 SFEEFWELIGEL 76 (89)
T ss_pred cHHHHHHHHHHH
Confidence 999999988765
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.60 E-value=3.2e-07 Score=55.82 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=52.7
Q ss_pred HHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHH
Q 027506 93 KQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAM 171 (222)
Q Consensus 93 l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~ 171 (222)
+..+|..+| +++|.|+.+|+..+++.++...+ ...+..+|+.+|.+++|.|+.+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~~ 56 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLS-------------------------EEEIDEMIREVDKDGDGKIDFE 56 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-------------------------HHHHHHHHHHhCCCCCCeEeHH
Confidence 467899999 99999999999999999886665 4467889999999999999999
Q ss_pred HHHHHH
Q 027506 172 ELQRLL 177 (222)
Q Consensus 172 el~~~l 177 (222)
++..++
T Consensus 57 ef~~~~ 62 (63)
T cd00051 57 EFLELM 62 (63)
T ss_pred HHHHHh
Confidence 998764
No 52
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.59 E-value=3.7e-07 Score=60.43 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=55.2
Q ss_pred HHHHHhhhcc--CCCC-cccHHHHHHHHHH-----cCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCC
Q 027506 92 SKQASFNKKE--HDDE-SLSRDEVEMVMRK-----LTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDEN 163 (222)
Q Consensus 92 ~l~~~F~~~D--~~~G-~i~~~el~~~l~~-----~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d 163 (222)
.++++|..+| +++| .|+.+||+.+|+. +|..++ ...+..+++.+|.|
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~-------------------------~~~v~~~i~~~D~n 63 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKE-------------------------QEVVDKVMETLDSD 63 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCC-------------------------HHHHHHHHHHhCCC
Confidence 7889999996 7999 5999999999998 666555 45688899999999
Q ss_pred CCCcccHHHHHHHHHHh
Q 027506 164 KDGFIDAMELQRLLCIL 180 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~ 180 (222)
++|.|+.+||..++...
T Consensus 64 ~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 64 GDGECDFQEFMAFVAMV 80 (88)
T ss_pred CCCcCcHHHHHHHHHHH
Confidence 99999999999888654
No 53
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.55 E-value=3.3e-07 Score=63.69 Aligned_cols=57 Identities=26% Similarity=0.225 Sum_probs=48.9
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
.+.-.|..+| |+||.|+.+||..+. ..+. ...+...|+.+|.|++|.||.
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~-------------------------e~~~~~f~~~~D~n~Dg~IS~ 99 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR----LDPN-------------------------EHCIKPFFESCDLDKDGSISL 99 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH----ccch-------------------------HHHHHHHHHHHCCCCCCCCCH
Confidence 7889999999 999999999999765 2222 335678999999999999999
Q ss_pred HHHHHHH
Q 027506 171 MELQRLL 177 (222)
Q Consensus 171 ~el~~~l 177 (222)
+|+...+
T Consensus 100 ~Ef~~cl 106 (116)
T cd00252 100 DEWCYCF 106 (116)
T ss_pred HHHHHHH
Confidence 9999988
No 54
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=2.1e-07 Score=74.13 Aligned_cols=118 Identities=20% Similarity=0.281 Sum_probs=83.1
Q ss_pred HHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcc--hhhhhhh--------cCHHHHHHHHhhcC-----CC--HHHHHH
Q 027506 94 QASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFE--DEELPQK--------LGSAELSWLFEEKE-----PS--LEEVKE 155 (222)
Q Consensus 94 ~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e--~~~~~~~--------~d~~ef~~~~~~~~-----~~--~~~l~~ 155 (222)
++.|..-| |++|.+|++||...|----.+...+ +.+.+.. ++++||+.=+-... +. ...-.+
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~ 245 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQ 245 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHH
Confidence 47799999 9999999999987653111111111 3444443 35678887443211 10 112236
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 027506 156 AFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVK 213 (222)
Q Consensus 156 ~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~ 213 (222)
.|...|+|++|+++.+|++.-+...+.. ....+..-++.+.|.|+||++|++|-+.
T Consensus 246 F~~~~DknkDG~L~~dEl~~WI~P~~~d--~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 246 FFEFRDKNKDGKLDGDELLDWILPSEQD--HAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHhhcCCCCccCHHHHhcccCCCCcc--HHHHHHHHHhhhhccCccccccHHHHhh
Confidence 7888899999999999999777555543 5678889999999999999999999765
No 55
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.53 E-value=1.5e-07 Score=49.50 Aligned_cols=30 Identities=50% Similarity=0.873 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-HhC
Q 027506 152 EVKEAFDVFDENKDGFIDAMELQRLLC-ILG 181 (222)
Q Consensus 152 ~l~~~F~~~D~d~~G~I~~~el~~~l~-~~~ 181 (222)
+++.+|+.||.|++|+|+.+||..+|. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999998 565
No 56
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.51 E-value=1.2e-06 Score=57.79 Aligned_cols=66 Identities=21% Similarity=0.429 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHh-C--CCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 152 EVKEAFDVFDENKDGFIDAMELQRLLCIL-G--LKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 152 ~l~~~F~~~D~d~~G~I~~~el~~~l~~~-~--~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
.+..+|..|- .+.|.+++.||+.++..- + ....-+++.++++|+..|.|+||.|+|.||+.++...
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 5678999997 557799999999999742 1 1112467889999999999999999999999988654
No 57
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.51 E-value=9.5e-07 Score=58.47 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=53.7
Q ss_pred HHHHHhhhcc--CC-CCcccHHHHHHHHHH---cCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCC
Q 027506 92 SKQASFNKKE--HD-DESLSRDEVEMVMRK---LTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKD 165 (222)
Q Consensus 92 ~l~~~F~~~D--~~-~G~i~~~el~~~l~~---~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~ 165 (222)
.|-.+|.++| ++ +|+|+.+||+.+++. +|...+ .+.+..+|+.+|.|++
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t-------------------------~~ev~~m~~~~D~d~d 65 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQ-------------------------DAEIAKLMEDLDRNKD 65 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCC-------------------------HHHHHHHHHHhcCCCC
Confidence 6678899999 46 789999999999974 565555 4578889999999999
Q ss_pred CcccHHHHHHHHHHh
Q 027506 166 GFIDAMELQRLLCIL 180 (222)
Q Consensus 166 G~I~~~el~~~l~~~ 180 (222)
|.|+.+||..++..+
T Consensus 66 G~Idf~EFv~lm~~l 80 (88)
T cd05029 66 QEVNFQEYVTFLGAL 80 (88)
T ss_pred CCCcHHHHHHHHHHH
Confidence 999999998888654
No 58
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.48 E-value=9.1e-07 Score=82.27 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=88.0
Q ss_pred HHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCc--------chhhhhhhcCH--------HHHHHHHhhc----CC
Q 027506 90 EKSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSF--------EDEELPQKLGS--------AELSWLFEEK----EP 148 (222)
Q Consensus 90 ~~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~--------e~~~~~~~~d~--------~ef~~~~~~~----~~ 148 (222)
+.++.-+|..|| +.+|.++.++|+.||+.+|++.+. +.++++..+|+ .+|.++|-.+ ..
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~ 2331 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENIL 2331 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccccc
Confidence 338888999999 999999999999999999998742 26778887775 4888888543 34
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHh----CCC----CCCceeHHHHHHHHH
Q 027506 149 SLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTF----DKN----GDGRIDFKEFVKFME 216 (222)
Q Consensus 149 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~----d~~----~dg~I~~~eF~~~l~ 216 (222)
+...+..||+.+|. +.-||+.+++... +|.++.+-++..+ ++- --+.++|.+|++.+.
T Consensus 2332 s~~eIE~AfraL~a-~~~yvtke~~~~~---------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2332 SSEEIEDAFRALDA-GKPYVTKEELYQN---------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred chHHHHHHHHHhhc-CCccccHHHHHhc---------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 55689999999998 8889999998764 3445555444443 432 124589999987653
No 59
>PLN02964 phosphatidylserine decarboxylase
Probab=98.47 E-value=8.5e-07 Score=78.25 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=56.4
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
.++.+|..+| +++|.|+.+||..++..++...+ .+.++.+|+.||+|++|+|+.
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~s-------------------------eEEL~eaFk~fDkDgdG~Is~ 234 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVA-------------------------ANKKEELFKAADLNGDGVVTI 234 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCC-------------------------HHHHHHHHHHhCCCCCCcCCH
Confidence 3789999999 99999999999999987764443 557999999999999999999
Q ss_pred HHHHHHHHH
Q 027506 171 MELQRLLCI 179 (222)
Q Consensus 171 ~el~~~l~~ 179 (222)
+||..++..
T Consensus 235 dEL~~vL~~ 243 (644)
T PLN02964 235 DELAALLAL 243 (644)
T ss_pred HHHHHHHHh
Confidence 999999988
No 60
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.41 E-value=9.9e-07 Score=72.88 Aligned_cols=126 Identities=17% Similarity=0.275 Sum_probs=87.3
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcc----hhhhh-------hhcCHHHHHHHHhhcCCCHHHHHHHHHH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFE----DEELP-------QKLGSAELSWLFEEKEPSLEEVKEAFDV 159 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e----~~~~~-------~~~d~~ef~~~~~~~~~~~~~l~~~F~~ 159 (222)
-++--|..+| ..+|.|+..+|..++-.+....... .+++. ..+.++||.++..-.. .......|...
T Consensus 319 il~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~-~l~dfd~Al~f 397 (489)
T KOG2643|consen 319 ILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFRFLN-NLNDFDIALRF 397 (489)
T ss_pred HHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 3445599999 7779999999988876654322211 12222 2245677777654211 02223333333
Q ss_pred hcCCCCCcccHHHHHHHHHH-hCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhc
Q 027506 160 FDENKDGFIDAMELQRLLCI-LGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFVE 221 (222)
Q Consensus 160 ~D~d~~G~I~~~el~~~l~~-~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~~ 221 (222)
| ...++.|+..+++++... .|.+ +++..++-+|.-||.|+||.++++||+.+|++++..
T Consensus 398 y-~~Ag~~i~~~~f~raa~~vtGve--LSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 398 Y-HMAGASIDEKTFQRAAKVVTGVE--LSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred H-HHcCCCCCHHHHHHHHHHhcCcc--cccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhc
Confidence 3 245889999999999876 4666 888889999999999999999999999999998753
No 61
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.40 E-value=1.2e-06 Score=61.45 Aligned_cols=68 Identities=29% Similarity=0.454 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC--CCCceeHHHHHHHHHhh
Q 027506 149 SLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKN--GDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 149 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~--~dg~I~~~eF~~~l~~~ 218 (222)
...+++.+|..||..++|.|+......+|+++|.+ .++.++.+.+..++++ +--+|+|++|+-++...
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~n--PT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQN--PTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCC--CcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH
Confidence 35689999999999999999999999999999988 6788999999998877 34579999998887653
No 62
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.34 E-value=4e-06 Score=57.09 Aligned_cols=62 Identities=23% Similarity=0.414 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
......+|+..|. ++|.|+.++.+.++...| ++.+.+..|....|.++||+++++||+-+|.
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~----L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG----LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT----SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC----CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4578899999985 689999999999999887 6678999999999999999999999998775
No 63
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.31 E-value=3.2e-06 Score=69.53 Aligned_cols=68 Identities=26% Similarity=0.466 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
+.+++..|+.||.+++|.|+..++.+.+..+..+ ....+....++...|.|.||.++|+||.+++..+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~ 80 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHP-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK 80 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCC-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh
Confidence 4578999999999999999999999999998875 4567788899999999999999999999998753
No 64
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.31 E-value=2.3e-06 Score=71.71 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=51.9
Q ss_pred cCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhh
Q 027506 146 KEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 146 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~ 220 (222)
.......++.+|+.||.+++|.|+.+||.. ++.+|..+|.|+||.|+++||...+...+.
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 345567889999999999999999999931 467899999999999999999999987653
No 65
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.25 E-value=7.9e-06 Score=54.16 Aligned_cols=69 Identities=25% Similarity=0.230 Sum_probs=52.5
Q ss_pred HHHHHhhh-cc-CCCC-cccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcc
Q 027506 92 SKQASFNK-KE-HDDE-SLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFI 168 (222)
Q Consensus 92 ~l~~~F~~-~D-~~~G-~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I 168 (222)
.|..+|.. .| +++| +|+.+||+.++....... +. .......+..+++.+|.|++|.|
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~-------------------~~-~~~~~~~~~~ll~~~D~d~DG~I 69 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASF-------------------TK-NQKDPGVLDRMMKKLDLNSDGQL 69 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHh-------------------hc-CCCCHHHHHHHHHHcCCCCCCcC
Confidence 67899999 77 7876 999999999997642111 00 01123468889999999999999
Q ss_pred cHHHHHHHHHHh
Q 027506 169 DAMELQRLLCIL 180 (222)
Q Consensus 169 ~~~el~~~l~~~ 180 (222)
+.+||..++..+
T Consensus 70 ~f~EF~~l~~~l 81 (89)
T cd05023 70 DFQEFLNLIGGL 81 (89)
T ss_pred cHHHHHHHHHHH
Confidence 999999988765
No 66
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.24 E-value=8.8e-06 Score=53.84 Aligned_cols=69 Identities=28% Similarity=0.383 Sum_probs=54.7
Q ss_pred HHHHHHhhhcc-C--CCCcccHHHHHHHHHH-cCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCC
Q 027506 91 KSKQASFNKKE-H--DDESLSRDEVEMVMRK-LTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDG 166 (222)
Q Consensus 91 ~~l~~~F~~~D-~--~~G~i~~~el~~~l~~-~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G 166 (222)
+.++.+|..+| . ++|.|+.+||..+++. +|...+. ......+..++..+|.+++|
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~---------------------~~~~~ei~~i~~~~d~~~~g 66 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKN---------------------QKDPEAVDKIMKDLDVNKDG 66 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccC---------------------CCCHHHHHHHHHHhccCCCC
Confidence 37889999999 4 8999999999999976 4533220 11244788899999999999
Q ss_pred cccHHHHHHHHHHh
Q 027506 167 FIDAMELQRLLCIL 180 (222)
Q Consensus 167 ~I~~~el~~~l~~~ 180 (222)
.|+.++|..++...
T Consensus 67 ~I~f~eF~~~~~~~ 80 (88)
T cd00213 67 KVDFQEFLVLIGKL 80 (88)
T ss_pred cCcHHHHHHHHHHH
Confidence 99999999988754
No 67
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.2e-05 Score=66.72 Aligned_cols=122 Identities=20% Similarity=0.322 Sum_probs=82.7
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHc------CCCC------C----cchhhh----------hhhcCHHHHHHHHh
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKL------TLFC------S----FEDEEL----------PQKLGSAELSWLFE 144 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~------~~~~------~----~e~~~~----------~~~~d~~ef~~~~~ 144 (222)
.++-+|..+| |++|-|+.+||..+.+-. |..- . .++... -+.+.+++|..++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 5567799999 999999999998765432 2100 0 011111 11235678888876
Q ss_pred hcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCC-HHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 145 EKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFE-LENCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 145 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~-~~~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
. ..++-++.-|..+|+..+|.|+..+|..+|-.+..-+... ...+.++-+.++.++.| |+++||.++.+
T Consensus 314 ~--Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~g-ISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 314 N--LQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKG-ISLQEFKAFFR 383 (489)
T ss_pred H--HHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCC-cCHHHHHHHHH
Confidence 4 2245677789999999999999999999987764211111 22567777888776555 99999987753
No 68
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.17 E-value=2.8e-06 Score=42.19 Aligned_cols=24 Identities=50% Similarity=0.756 Sum_probs=16.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHH
Q 027506 153 VKEAFDVFDENKDGFIDAMELQRL 176 (222)
Q Consensus 153 l~~~F~~~D~d~~G~I~~~el~~~ 176 (222)
|+.+|+.+|.|++|.||.+|+.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 345677777777777777777664
No 69
>PF14658 EF-hand_9: EF-hand domain
Probab=98.17 E-value=1.2e-05 Score=49.56 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHhhhcc-CCCCcccHHHHHHHHHHcCC-CCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCC-CcccHH
Q 027506 95 ASFNKKE-HDDESLSRDEVEMVMRKLTL-FCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKD-GFIDAM 171 (222)
Q Consensus 95 ~~F~~~D-~~~G~i~~~el~~~l~~~~~-~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~-G~I~~~ 171 (222)
..|..+| ++.|.|...++...|+.++. .|. +..+....+.+|++|. |.|+.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~-------------------------e~~Lq~l~~elDP~g~~~~v~~d 56 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPE-------------------------ESELQDLINELDPEGRDGSVNFD 56 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCc-------------------------HHHHHHHHHHhCCCCCCceEeHH
Confidence 3699999 99999999999999999988 555 5578889999999999 999999
Q ss_pred HHHHHHHH
Q 027506 172 ELQRLLCI 179 (222)
Q Consensus 172 el~~~l~~ 179 (222)
.|..+|+.
T Consensus 57 ~F~~iM~~ 64 (66)
T PF14658_consen 57 TFLAIMRD 64 (66)
T ss_pred HHHHHHHH
Confidence 99998864
No 70
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.10 E-value=3.7e-06 Score=44.15 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHH-HcC
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMR-KLT 120 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~-~~~ 120 (222)
+++.+|..+| +++|.|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 4689999999 9999999999999998 565
No 71
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.08 E-value=7.7e-05 Score=56.24 Aligned_cols=110 Identities=22% Similarity=0.268 Sum_probs=80.4
Q ss_pred CcccHHHHHHHHHHcCC-CCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHhCC
Q 027506 105 ESLSRDEVEMVMRKLTL-FCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGF-IDAMELQRLLCILGL 182 (222)
Q Consensus 105 G~i~~~el~~~l~~~~~-~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~-I~~~el~~~l~~~~~ 182 (222)
+..+.+|+..++..... ... . --+.+..++|..+..-.... ...++|+.||.+++|. |+.+++.+++..+..
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~--~--~~g~lt~eef~~i~~~~~Np--~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~ 98 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRN--N--GDGYLTKEEFLSIPELALNP--LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSP 98 (187)
T ss_pred cccCHHHHHHHHHHHHHhccc--c--ccCccCHHHHHHHHHHhcCc--HHHHHHHHHhccCCCCccCHHHHHHHHhhhcC
Confidence 34778888776654311 111 0 22456777888766322221 4578999999999999 999999999988764
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhc
Q 027506 183 KEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFVE 221 (222)
Q Consensus 183 ~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~~ 221 (222)
+ ....+.+.-+|+.+|.+++|.|+.+|+..++...+++
T Consensus 99 ~-~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~ 136 (187)
T KOG0034|consen 99 K-ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGE 136 (187)
T ss_pred C-ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc
Confidence 3 2334488899999999999999999999999887764
No 72
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.06 E-value=2e-05 Score=65.81 Aligned_cols=115 Identities=10% Similarity=0.134 Sum_probs=81.0
Q ss_pred hhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhh------------hcCHHHHHHHHh--hcCCCHHHHHHHHHHhc
Q 027506 97 FNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQ------------KLGSAELSWLFE--EKEPSLEEVKEAFDVFD 161 (222)
Q Consensus 97 F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~------------~~d~~ef~~~~~--~~~~~~~~l~~~F~~~D 161 (222)
|-.+| +++|.|+.++|..--..... ..=++.|+. .+|+.+|+-++- +.......+.-.|+.+|
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~tlt--~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclD 361 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDHTLT--ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLD 361 (493)
T ss_pred HhhhccccccccCHHHHHHHhccchh--hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeee
Confidence 77899 99999999999653211111 001444444 468889988763 23445567899999999
Q ss_pred CCCCCcccHHHHHHHHHH-------hCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 027506 162 ENKDGFIDAMELQRLLCI-------LGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVK 213 (222)
Q Consensus 162 ~d~~G~I~~~el~~~l~~-------~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~ 213 (222)
.+++|.|+..|++-.... +|..+..=++.+.+++..+-+...|+|++++|..
T Consensus 362 ld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 362 LDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 999999999998776653 2332222245667888888877788999999976
No 73
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.03 E-value=1.4e-05 Score=74.82 Aligned_cols=69 Identities=26% Similarity=0.474 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHH-----HHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELE-----NCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~-----~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
...+..+|++||++.+|.++..+|+.+|+++|.+-++-++ ++++++..+|++.+|+|+..+|+.+|.++
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 3456779999999999999999999999999976434444 89999999999999999999999999875
No 74
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.00 E-value=2e-05 Score=63.04 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=79.9
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCccc
Q 027506 91 KSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFID 169 (222)
Q Consensus 91 ~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~ 169 (222)
..++..|..|| +++|.++..|.-..+.-+.-.+. ...-++-+|+.|+.+.+|.+.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~------------------------t~~iiq~afk~f~v~eDg~~g 314 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPV------------------------TPVIIQYAFKRFSVAEDGISG 314 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCC------------------------cHHHHHHHHHhcccccccccc
Confidence 47789999999 99999999998887766533322 144678899999999999999
Q ss_pred HHHHHHHHHH-hCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 170 AMELQRLLCI-LGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 170 ~~el~~~l~~-~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
..+|.-+|.. +|.. +=.+--+|...+...+|+|+|.+|.+++..
T Consensus 315 e~~ls~ilq~~lgv~----~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 315 EHILSLILQVVLGVE----VLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred hHHHHHHHHHhcCcc----eeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 9999999985 3432 234667899999999999999999998764
No 75
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.98 E-value=4.3e-05 Score=44.34 Aligned_cols=48 Identities=23% Similarity=0.536 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 168 IDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 168 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
++..|++.+|+.+... +++..+..+|+..|.+++|.+..+||..+++.
T Consensus 2 msf~Evk~lLk~~NI~--~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIE--MDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccC--cCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 6789999999999877 89999999999999999999999999998764
No 76
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.96 E-value=4.2e-06 Score=58.03 Aligned_cols=62 Identities=29% Similarity=0.405 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q 027506 149 SLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKF 214 (222)
Q Consensus 149 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~ 214 (222)
....+..-|..+|.|++|.|+..||..+...+ . ..+.-+..++...|.|+||.|++.|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-M---PPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-S---TTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-h---hhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 35578889999999999999999999887644 2 24456889999999999999999999764
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.95 E-value=1.6e-05 Score=39.38 Aligned_cols=25 Identities=40% Similarity=0.889 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHH
Q 027506 191 CKKMIKTFDKNGDGRIDFKEFVKFM 215 (222)
Q Consensus 191 ~~~~~~~~d~~~dg~I~~~eF~~~l 215 (222)
++.+|..+|.|+||.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 78
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.95 E-value=9.3e-05 Score=55.31 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=69.8
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
....+|..+| +.||+|+..||+.++.++|.+.+ +--++.+....|.|.+|.||.
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQT-------------------------HL~lK~mikeVded~dgklSf 154 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQT-------------------------HLGLKNMIKEVDEDFDGKLSF 154 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchh-------------------------hHHHHHHHHHhhcccccchhH
Confidence 5568999999 99999999999999999998877 446788888999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHH--hCCCCCCceeHHHH
Q 027506 171 MELQRLLCILGLKEGFELENCKKMIKT--FDKNGDGRIDFKEF 211 (222)
Q Consensus 171 ~el~~~l~~~~~~~~~~~~~~~~~~~~--~d~~~dg~I~~~eF 211 (222)
.|+.-+++..--..--.+..+..+.+. +|...-|.-.-..|
T Consensus 155 reflLIfrkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknF 197 (244)
T KOG0041|consen 155 REFLLIFRKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNF 197 (244)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHhcccchhhhhhhhHHHH
Confidence 999888875311111233444444444 66666564444444
No 79
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.92 E-value=3.3e-05 Score=52.59 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=53.0
Q ss_pred HHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHH
Q 027506 92 SKQASFNKKEHDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAM 171 (222)
Q Consensus 92 ~l~~~F~~~D~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~ 171 (222)
....+|..+|.++|.|+.++...++...|+... .|..++..-|.+++|+++.+
T Consensus 11 ~y~~~F~~l~~~~g~isg~~a~~~f~~S~L~~~---------------------------~L~~IW~LaD~~~dG~L~~~ 63 (104)
T PF12763_consen 11 KYDQIFQSLDPQDGKISGDQAREFFMKSGLPRD---------------------------VLAQIWNLADIDNDGKLDFE 63 (104)
T ss_dssp HHHHHHHCTSSSTTEEEHHHHHHHHHHTTSSHH---------------------------HHHHHHHHH-SSSSSEEEHH
T ss_pred HHHHHHHhcCCCCCeEeHHHHHHHHHHcCCCHH---------------------------HHHHHHhhhcCCCCCcCCHH
Confidence 778999999977899999999999988776543 78999999999999999999
Q ss_pred HHHHHHHH
Q 027506 172 ELQRLLCI 179 (222)
Q Consensus 172 el~~~l~~ 179 (222)
||.-+++-
T Consensus 64 EF~iAm~L 71 (104)
T PF12763_consen 64 EFAIAMHL 71 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888874
No 80
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.89 E-value=7.4e-05 Score=49.43 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=52.5
Q ss_pred HHHHHhhhcc-C--CCCcccHHHHHHHHHH-cCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCc
Q 027506 92 SKQASFNKKE-H--DDESLSRDEVEMVMRK-LTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGF 167 (222)
Q Consensus 92 ~l~~~F~~~D-~--~~G~i~~~el~~~l~~-~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~ 167 (222)
.+-.+|..++ . .+|.|+.+||+.++.. +|...+ .......+..+|+.+|.+++|.
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t---------------------~~~~~~~v~~i~~~~D~d~dG~ 67 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLK---------------------KEKNQKAIDKIFEDLDTNQDGQ 67 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhc---------------------cCCCHHHHHHHHHHcCCCCCCc
Confidence 5678899999 5 4789999999999973 332221 0112447888999999999999
Q ss_pred ccHHHHHHHHHHh
Q 027506 168 IDAMELQRLLCIL 180 (222)
Q Consensus 168 I~~~el~~~l~~~ 180 (222)
|+.+||..++..+
T Consensus 68 I~f~eF~~~~~~~ 80 (88)
T cd05030 68 LSFEEFLVLVIKV 80 (88)
T ss_pred CcHHHHHHHHHHH
Confidence 9999999988765
No 81
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=5.5e-05 Score=51.35 Aligned_cols=60 Identities=32% Similarity=0.484 Sum_probs=46.1
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHh------CC-C-CCCCHHHHHHHHH----HhCCCCCCceeHHHHHHH
Q 027506 155 EAFDVFDENKDGFIDAMELQRLLCIL------GL-K-EGFELENCKKMIK----TFDKNGDGRIDFKEFVKF 214 (222)
Q Consensus 155 ~~F~~~D~d~~G~I~~~el~~~l~~~------~~-~-~~~~~~~~~~~~~----~~d~~~dg~I~~~eF~~~ 214 (222)
--|++.|.|++|.|+--||.+++.-. |. + |..++.+++.++. .-|.|+||.|+|-||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 36889999999999999999998743 32 2 3345666665554 458899999999999864
No 82
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.78 E-value=5.5e-05 Score=72.39 Aligned_cols=47 Identities=32% Similarity=0.601 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHhhcCcccccCCCCcHHHHHHHHHHHHHHHhcccc
Q 027506 2 PEKIQKWRAALTEASNLSGWDSMTIRSEAQLVNKIVGDVLKKLKSSA 48 (222)
Q Consensus 2 ~~~~~~w~~~l~~~~~~~G~~~~~~~~~~~~i~~il~~~~~~~~~~~ 48 (222)
.|+|++||.||++|||++||++..|++|+++|++|++.++++++.+.
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~ 179 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTP 179 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhcccc
Confidence 47899999999999999999999999999999999999999997554
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.75 E-value=0.00016 Score=41.97 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 027506 107 LSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCIL 180 (222)
Q Consensus 107 i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 180 (222)
++.+|++.+|+.++.... ...+..+|+..|++++|.+..+|+...++.+
T Consensus 2 msf~Evk~lLk~~NI~~~-------------------------~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMD-------------------------DEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT-----------------------------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcC-------------------------HHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 678899999998887766 4577889999999999999999999988754
No 84
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.72 E-value=0.00014 Score=61.80 Aligned_cols=66 Identities=29% Similarity=0.516 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCC-CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 151 EEVKEAFDVFDENKDGFIDAMELQRLLCILGLKE-GFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 151 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
..++..|...| |++|+|+..++..++...+.+. ....+++++++...+.|.+|.|+|++|+..+..
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 35788999999 9999999999999999877642 135789999999999999999999999996543
No 85
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.60 E-value=0.00043 Score=58.58 Aligned_cols=117 Identities=19% Similarity=0.304 Sum_probs=80.4
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCC------cc-hhh-----hhhhcCHHHHHHHHhhcCCCHHHHHHHHH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCS------FE-DEE-----LPQKLGSAELSWLFEEKEPSLEEVKEAFD 158 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~------~e-~~~-----~~~~~d~~ef~~~~~~~~~~~~~l~~~F~ 158 (222)
-...+|+.+| .++|.+|.+++..+++....... .+ ++- -...+++.+|.++++.-. .+..+++|+
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~--~E~~~qafr 186 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ--LEHAEQAFR 186 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHH--HHHHHHHHH
Confidence 4457899999 99999999999999998654332 11 221 222357889999886422 345789999
Q ss_pred HhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCC-ceeHHHHH
Q 027506 159 VFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDG-RIDFKEFV 212 (222)
Q Consensus 159 ~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg-~I~~~eF~ 212 (222)
..|+.++|.||.-+++.++.....+ +...-++..+-.+....+| +++|..|.
T Consensus 187 ~~d~~~ng~is~Ldfq~imvt~~~h--~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 187 EKDKAKNGFISVLDFQDIMVTIRIH--LLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HhcccCCCeeeeechHhhhhhhhhh--cCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 9999999999999999998765543 4444555555544333333 45555553
No 86
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.55 E-value=0.001 Score=43.92 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=52.9
Q ss_pred HHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHH
Q 027506 92 SKQASFNKKEHDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAM 171 (222)
Q Consensus 92 ~l~~~F~~~D~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~ 171 (222)
.|-.+|.++-.+.|+++..||+.++.. ||..++.. ......+..+|+.+|.|++|.|+..
T Consensus 9 ~lI~~FhkYaG~~~tLsk~Elk~Ll~~-------------------Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~ 68 (91)
T cd05024 9 KMMLTFHKFAGEKNYLNRDDLQKLMEK-------------------EFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQ 68 (91)
T ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHH-------------------HhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHH
Confidence 566788888845679999999999874 12222222 2235578899999999999999999
Q ss_pred HHHHHHHHhC
Q 027506 172 ELQRLLCILG 181 (222)
Q Consensus 172 el~~~l~~~~ 181 (222)
|+..++..+.
T Consensus 69 EF~~Lv~~l~ 78 (91)
T cd05024 69 SFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 87
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.43 E-value=0.00043 Score=57.79 Aligned_cols=68 Identities=26% Similarity=0.268 Sum_probs=54.0
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
.|..+|..+| |++|.||.+||..++.-++..... .-+...+-..-+.+|-|++|.|+.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~---------------------~i~~~~i~~la~~mD~NkDG~IDl 606 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNG---------------------AISDDEILELARSMDLNKDGKIDL 606 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCC---------------------CcCHHHHHHHHHhhccCCCCcccH
Confidence 5668999999 999999999999988766543321 112346677788999999999999
Q ss_pred HHHHHHHHHh
Q 027506 171 MELQRLLCIL 180 (222)
Q Consensus 171 ~el~~~l~~~ 180 (222)
.||.++++-.
T Consensus 607 NEfLeAFrlv 616 (631)
T KOG0377|consen 607 NEFLEAFRLV 616 (631)
T ss_pred HHHHHHHhhh
Confidence 9999998754
No 88
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.42 E-value=0.00059 Score=44.50 Aligned_cols=66 Identities=20% Similarity=0.416 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHHhhh
Q 027506 153 VKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKN----GDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 153 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~dg~I~~~eF~~~l~~~~ 219 (222)
+..+|..+-. +.+.||.++|...|......+..+.+.+..++..+..+ ..+.+++++|..+|...-
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 6789999944 89999999999999876554457899999999998654 468899999999997653
No 89
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.38 E-value=0.00065 Score=57.04 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=70.6
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHH--HHHcCCCCC-cchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCc
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMV--MRKLTLFCS-FEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGF 167 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~--l~~~~~~~~-~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~ 167 (222)
.+.++|=.++ .+.|.|+.+|+... +..+..-.. ..+.+..+.+.++- ...+..-|-.+|+|++|.
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~-----------f~viy~kFweLD~Dhd~l 294 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEH-----------FYVIYCKFWELDTDHDGL 294 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHH-----------HHHHHHHHhhhccccccc
Confidence 5668899999 99999999998653 211110000 00222222222221 223444588889999999
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC----CCCCCceeHHHHHHHHHh
Q 027506 168 IDAMELQRLLCILGLKEGFELENCKKMIKTFD----KNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 168 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d----~~~dg~I~~~eF~~~l~~ 217 (222)
|+.++|...-... ++.--++.||..+. ...+|+++|++|+.++..
T Consensus 295 idk~~L~ry~d~t-----lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 295 IDKEDLKRYGDHT-----LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred cCHHHHHHHhccc-----hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 9999998754322 45667888888443 346899999999988764
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.38 E-value=0.00047 Score=57.99 Aligned_cols=51 Identities=27% Similarity=0.329 Sum_probs=44.4
Q ss_pred HHHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCccc
Q 027506 91 KSKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFID 169 (222)
Q Consensus 91 ~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~ 169 (222)
..++.+|..+| +++|.|+.+||.. +..+|+.+|.|++|.|+
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~--------------------------------------~~~~F~~~D~d~DG~Is 375 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG--------------------------------------SDAVFDALDLNHDGKIT 375 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH--------------------------------------HHHHHHHhCCCCCCCCc
Confidence 37789999999 9999999999831 23589999999999999
Q ss_pred HHHHHHHHHH
Q 027506 170 AMELQRLLCI 179 (222)
Q Consensus 170 ~~el~~~l~~ 179 (222)
.+||..++..
T Consensus 376 ~eEf~~~~~~ 385 (391)
T PRK12309 376 PEEMRAGLGA 385 (391)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 91
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.32 E-value=0.0013 Score=50.98 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=24.5
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRK 118 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~ 118 (222)
.|..+|.+.| |.||+||..|++..+..
T Consensus 102 klmviFsKvDVNtDrkisAkEmqrwIme 129 (362)
T KOG4251|consen 102 KLMVIFSKVDVNTDRKISAKEMQRWIME 129 (362)
T ss_pred HHHHHHhhcccCccccccHHHHHHHHHH
Confidence 7889999999 99999999999987763
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.11 E-value=0.00071 Score=33.65 Aligned_cols=25 Identities=52% Similarity=0.748 Sum_probs=13.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHH
Q 027506 154 KEAFDVFDENKDGFIDAMELQRLLC 178 (222)
Q Consensus 154 ~~~F~~~D~d~~G~I~~~el~~~l~ 178 (222)
+.+|+.+|.+++|.|+..+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555555555555543
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.06 E-value=0.00096 Score=33.13 Aligned_cols=27 Identities=44% Similarity=0.915 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 191 CKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 191 ~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
+..++..+|.+++|.|++.+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999998874
No 94
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.05 E-value=0.00036 Score=54.53 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=31.2
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 21 WDSMTIRSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 21 ~~~~~~~~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
|+..+ ..++++|+++++.+|.+|.++.+||+|||+.
T Consensus 236 w~~is-~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~ 271 (355)
T KOG0033|consen 236 WDTVT-PEAKSLIRRMLTVNPKKRITADEALKHPWIC 271 (355)
T ss_pred cCcCC-HHHHHHHHHHhccChhhhccHHHHhCCchhc
Confidence 44444 4688899999999999999999999999997
No 95
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.89 E-value=0.022 Score=48.59 Aligned_cols=92 Identities=13% Similarity=0.047 Sum_probs=59.5
Q ss_pred HHHHHHHhhh---cc-CCCCcccHHHHHHHHHHc-CCCCC-cchhhhhh---------hcCHHHHHHHHhhcCCCHHHHH
Q 027506 90 EKSKQASFNK---KE-HDDESLSRDEVEMVMRKL-TLFCS-FEDEELPQ---------KLGSAELSWLFEEKEPSLEEVK 154 (222)
Q Consensus 90 ~~~l~~~F~~---~D-~~~G~i~~~el~~~l~~~-~~~~~-~e~~~~~~---------~~d~~ef~~~~~~~~~~~~~l~ 154 (222)
.++|+.+|.+ .+ ++.-..+.++|....-.+ +.+.. .++..+.. .++++||.++-.-.-.......
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~~ 111 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALFE 111 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHHH
Confidence 3366777654 45 566678888886654332 22211 12333322 2467888875432222355678
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhC
Q 027506 155 EAFDVFDENKDGFIDAMELQRLLCILG 181 (222)
Q Consensus 155 ~~F~~~D~d~~G~I~~~el~~~l~~~~ 181 (222)
.+|..||+.++|.+|.+++..++....
T Consensus 112 ~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 112 VAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred HHHHHhcccCCCceehHHHHHHHhccc
Confidence 899999999999999999999998754
No 96
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.82 E-value=0.00039 Score=48.21 Aligned_cols=57 Identities=26% Similarity=0.272 Sum_probs=40.1
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
.+.=.|..+| |+||.|+..|+..+...+ .+. +.-++..|+..|.|++|.||.
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~-------------------------e~C~~~F~~~CD~n~d~~Is~ 107 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPP-------------------------EHCARPFFRSCDVNKDGKISL 107 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTT--STT-------------------------GGGHHHHHHHH-TT-SSSEEH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhh-------------------------HHHHHHHHHHcCCCCCCCCCH
Confidence 5667799999 999999999998765433 222 124677899999999999999
Q ss_pred HHHHH
Q 027506 171 MELQR 175 (222)
Q Consensus 171 ~el~~ 175 (222)
.|+..
T Consensus 108 ~EW~~ 112 (113)
T PF10591_consen 108 DEWCN 112 (113)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 99854
No 97
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.63 E-value=0.007 Score=46.95 Aligned_cols=68 Identities=24% Similarity=0.305 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCIL-GLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
...+..+|..-|.|.+|+||..|+++-+..- ..+-.-+-++-+..|..+|+|+||.|+++||.--+..
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 4578899999999999999999998876531 1000011123345677789999999999999755443
No 98
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.47 E-value=0.0052 Score=49.89 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
...+..+|+.+|.|.+|.++..||+.+-. + -.+.-++.+|...|...||.|+-.|++.++.+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l--d----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL--D----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc--c----CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 55789999999999999999999988752 2 34567899999999999999999999988765
No 99
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.0058 Score=54.57 Aligned_cols=63 Identities=19% Similarity=0.412 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 027506 149 SLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFM 215 (222)
Q Consensus 149 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l 215 (222)
...+.+..|+.+|+..+|++|-..-+.+|...+ ++...+..|....|.|+||+++-+||+-.|
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~----Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG----LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC----CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 456789999999999999999999999998877 456778889999999999999999998655
No 100
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.27 E-value=0.051 Score=48.76 Aligned_cols=125 Identities=17% Similarity=0.267 Sum_probs=92.4
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcc-hhhhhhhc--------CHHHHHHHHhhcCCCHHHHHHHHHHhc
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFE-DEELPQKL--------GSAELSWLFEEKEPSLEEVKEAFDVFD 161 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e-~~~~~~~~--------d~~ef~~~~~~~~~~~~~l~~~F~~~D 161 (222)
-+..+|...| +++|.++..+...++..+....... ...+++.. ...+|..+........ .+...|..+-
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp-ev~~~f~~~s 215 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP-EVYFLFVQYS 215 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc-hHHHHHHHHh
Confidence 6678899999 9999999999999999876655421 22222222 2345666555433333 7888898884
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHHhh
Q 027506 162 ENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKN----GDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 162 ~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~dg~I~~~eF~~~l~~~ 218 (222)
++.++++.++|...+........++.+.+++|++.+... ..+.++++.|..+|...
T Consensus 216 -~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 216 -HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred -CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 449999999999999987655568889999999888543 34669999999998654
No 101
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.23 E-value=0.021 Score=49.09 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=50.8
Q ss_pred HHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHH
Q 027506 92 SKQASFNKKEHDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAM 171 (222)
Q Consensus 92 ~l~~~F~~~D~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~ 171 (222)
.+++.|..+|+++|+++..|+..++...+..... ...+.++.+....+.|.+|.|+.+
T Consensus 20 ~l~~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~----------------------~~~eei~~~l~~~~~~~~g~v~fe 77 (627)
T KOG0046|consen 20 ELKEKFNKLDDQKGYVTVYELPDAFKKAKLPLGY----------------------FVREEIKEILGEVGVDADGRVEFE 77 (627)
T ss_pred HHHHHHHhhcCCCCeeehHHhHHHHHHhcccccc----------------------hhHHHHHHHHhccCCCcCCccCHH
Confidence 8889999999999999999999999988765531 113356667777777888888888
Q ss_pred HHHHHHHH
Q 027506 172 ELQRLLCI 179 (222)
Q Consensus 172 el~~~l~~ 179 (222)
+|..++-.
T Consensus 78 ~f~~~~~~ 85 (627)
T KOG0046|consen 78 EFVGIFLN 85 (627)
T ss_pred HHHHHHHh
Confidence 87775543
No 102
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.07 E-value=0.0015 Score=55.16 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=49.7
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHhccccccCCCChhhHH-------HHHHHHhhcccchhhhhhhhhcc--ccccCccHH
Q 027506 21 WDSMTIRSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQFS-------AFIQVILSYRFLLYSSFLQSVQS--CKSRNWDEK 91 (222)
Q Consensus 21 ~~~~~~~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~~-------~~~~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~ 91 (222)
|+..+ ..++++|+.++..++.+|.++.++|.|||+.-. .+..+....+.+.....+.+... ...... ..
T Consensus 262 w~~is-~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 339 (382)
T KOG0032|consen 262 WDDIS-ESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSIGEATNIPLDISVLSRSKQFLSMSKLKKLALRVLAESLS-IS 339 (382)
T ss_pred ccccC-HHHHHHHHHhcccCcccCCCHHHHhcCccccCCcccccccccchhhhhHHHHHHHHHHHHHHHHHHhhhhh-HH
Confidence 34443 468899999999999999999999999998732 12223333222222223332211 111111 45
Q ss_pred HHHHHhhhcc-CCC
Q 027506 92 SKQASFNKKE-HDD 104 (222)
Q Consensus 92 ~l~~~F~~~D-~~~ 104 (222)
.++..|..+| +++
T Consensus 340 ~~~~~~~~~~~~~~ 353 (382)
T KOG0032|consen 340 GLKEMFKLMDTDNN 353 (382)
T ss_pred HHHHHHHhhccccc
Confidence 6778888888 655
No 103
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.06 E-value=0.024 Score=49.47 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
.+.+..+|..||.|++|.++..||..++...+..|.......+.. -.+..|.++|+.|+..+.
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t----~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST----VKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc----eecccceeehhhHHHHHH
Confidence 467899999999999999999999999987754432111111110 112578999999988754
No 104
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.98 E-value=0.027 Score=40.24 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=49.9
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCC-Cc-chhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcc
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFC-SF-EDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFI 168 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~-~~-e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I 168 (222)
...-+|+.+| |+|+.|...+|...++.+.... +. |+.- .+..+..--|.||+|.|
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~----------------------i~ekvieEAD~DgDgkl 166 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVEL----------------------ICEKVIEEADLDGDGKL 166 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHH----------------------HHHHHHHHhcCCCCCcc
Confidence 4456688999 9999999999999999875432 21 1111 24456677899999999
Q ss_pred cHHHHHHHHHH
Q 027506 169 DAMELQRLLCI 179 (222)
Q Consensus 169 ~~~el~~~l~~ 179 (222)
+..|+..++..
T Consensus 167 ~~~eFe~~i~r 177 (189)
T KOG0038|consen 167 SFAEFEHVILR 177 (189)
T ss_pred cHHHHHHHHHh
Confidence 99999998754
No 105
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.75 E-value=0.2 Score=37.03 Aligned_cols=122 Identities=12% Similarity=-0.001 Sum_probs=76.0
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcc-hhhhhhhc--CH--------H----HHHHHHh-----------
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFE-DEELPQKL--GS--------A----ELSWLFE----------- 144 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e-~~~~~~~~--d~--------~----ef~~~~~----------- 144 (222)
.|++-...+| |+||.|..-|--.+++.+|+..--. +.-++-.. .+ + =++.-+.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 4557788899 9999999999999999998875411 00000000 00 0 0011000
Q ss_pred --hcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCC---C--CCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q 027506 145 --EKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKE---G--FELENCKKMIKTFDKNGDGRIDFKEFVKF 214 (222)
Q Consensus 145 --~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~---~--~~~~~~~~~~~~~d~~~dg~I~~~eF~~~ 214 (222)
+..-..+++..+|..+++.+.+.+|..|+.++++.-.... + -+.-|+..+... -.+.||.+.-+.-..+
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYIL-AKDKDGFLSKEDIRGV 163 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHH-HcCcCCcEeHHHHhhh
Confidence 0122357899999999999999999999999998643210 0 122344433333 3567899988765544
No 106
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.93 E-value=0.073 Score=39.32 Aligned_cols=67 Identities=18% Similarity=0.378 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCC----------------------------------------------
Q 027506 152 EVKEAFDVFDENKDGFIDAMELQRLLCILGLKEG---------------------------------------------- 185 (222)
Q Consensus 152 ~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~---------------------------------------------- 185 (222)
.|++-...||+|++|.|.+-|-..-++.+|.+.-
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 5666777899999999999998888887765410
Q ss_pred -----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 186 -----FELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 186 -----~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
...+.+++||..++..+.+.+++.|..+|++..
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 123788999999998888889999999998864
No 107
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.82 E-value=0.072 Score=43.22 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
-+.++..|..||.+++|.++..|-...+.-+.. +..+.+.++-.|+.++.+.||.+.-.+|..++.-.
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~-p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCG-PPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV 325 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeC-CCCcHHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 468899999999999999999998887766544 34788999999999999999999998888777643
No 108
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.80 E-value=0.0053 Score=51.36 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..+-++|..+|...|++|+++.+||+|||+.-
T Consensus 411 eea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~ 442 (475)
T KOG0615|consen 411 EEALDLINWMLVVDPENRPSADEALNHPWFKD 442 (475)
T ss_pred HHHHHHHHHhhEeCcccCcCHHHHhcChhhhc
Confidence 35668999999999999999999999999984
No 109
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.80 E-value=0.024 Score=35.37 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC-------CCCceeHHHHHHH
Q 027506 149 SLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKN-------GDGRIDFKEFVKF 214 (222)
Q Consensus 149 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~-------~dg~I~~~eF~~~ 214 (222)
+.+++..+|+.+ .++.++||.++|++.|.. +.++-++..+..- ..|.++|..|++.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p---------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP---------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C---------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCc---------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 345889999999 889999999999998632 1224444443221 1267999998753
No 110
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.71 E-value=0.081 Score=46.11 Aligned_cols=66 Identities=17% Similarity=0.359 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 151 EEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 151 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
...+.-|..+|.|+.|+++..++.++|+..+.. .+++.+.+++.+.|.+-.|.+...||..++...
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~--~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVG--WDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 445678999999999999999999999998855 899999999999999999999999999988754
No 111
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.59 E-value=0.039 Score=44.69 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHH---HHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQR---LLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~---~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~ 220 (222)
+..+..-|..+|+|+++.|.+.|++. ++..-. -...-...+++..|.|+|-+|+++|+..++.....
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s----~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS----KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhc----cHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 34677789999999999999999654 443322 23355678999999999999999999998865433
No 112
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.31 E-value=0.13 Score=47.28 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCC---HHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFE---LENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~---~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~ 220 (222)
..+++..|+.+|+...|.++.+++...|..+|.+..-. ..++..++...|.+.-|.++|.+|...|.+.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 35789999999999999999999999999999762211 234556777778887799999999999988653
No 113
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=0.13 Score=44.11 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 151 EEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 151 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
+.+..-|+-+..|-+|+|+-.--++++.... ++-+++..|.+..|.+.||.+++.|||..|.
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk----lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK----LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc----CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 4456679999999999999999999998765 5558899999999999999999999999874
No 114
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.85 E-value=0.1 Score=49.93 Aligned_cols=59 Identities=12% Similarity=0.341 Sum_probs=50.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 155 EAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 155 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
..|+.+|+||.|.|+..+|.+++..... .+..+++-++.....|.+...+|++|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~---ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKH---YTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcccc---chhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 3688999999999999999999975432 5778899899998888888999999987654
No 115
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.17 E-value=0.92 Score=33.20 Aligned_cols=64 Identities=16% Similarity=0.353 Sum_probs=48.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 155 EAFDVFDENKDGFIDAMELQRLLCILGL-KEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 155 ~~F~~~D~d~~G~I~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
.+|-.|-..+...++..-|.++|+..++ ...++...++-+|..+-..+...|+|++|..+|...
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3444445677889999999999998875 233888999999999876666789999999998753
No 116
>PLN02952 phosphoinositide phospholipase C
Probab=93.17 E-value=0.99 Score=40.36 Aligned_cols=67 Identities=18% Similarity=0.350 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC-------CCCCceeHHHHHHHHHh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDK-------NGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~-------~~dg~I~~~eF~~~l~~ 217 (222)
...+..+|..+-. +.+.++.++|...|.........+.+.+..++..+-. .+.+.++++.|..+|..
T Consensus 37 r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 37 PDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred hHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 4578899999954 4578999999999998654333677777777665411 12345899999999874
No 117
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=0.14 Score=46.12 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=52.9
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
..+.+|+.+| ..+|+||-..-+.+|-..++... .|..++..-|.|+||.++.
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~---------------------------~LA~IW~LsDvd~DGkL~~ 248 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSGLPQN---------------------------QLAHIWTLSDVDGDGKLSA 248 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcCCchh---------------------------hHhhheeeeccCCCCcccH
Confidence 5678999999 99999999999998877766554 6788999999999999999
Q ss_pred HHHHHHHHH
Q 027506 171 MELQRLLCI 179 (222)
Q Consensus 171 ~el~~~l~~ 179 (222)
+||.-++..
T Consensus 249 dEfilam~l 257 (1118)
T KOG1029|consen 249 DEFILAMHL 257 (1118)
T ss_pred HHHHHHHHH
Confidence 999877763
No 118
>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]
Probab=93.05 E-value=0.032 Score=44.60 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...+++|.+++..+|.++.++.+||.|||+..
T Consensus 257 ~~~KdLIsrlLqVdp~~Ritake~LaHpff~q 288 (411)
T KOG0599|consen 257 ATVKDLISRLLQVDPTKRITAKEALAHPFFIQ 288 (411)
T ss_pred ccHHHHHHHHHeeCchhcccHHHHhcChHHHH
Confidence 46789999999999999999999999999964
No 119
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.00 E-value=1.3 Score=29.16 Aligned_cols=65 Identities=15% Similarity=0.321 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHh-------CCCC--CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 151 EEVKEAFDVFDENKDGFIDAMELQRLLCIL-------GLKE--GFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 151 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-------~~~~--~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
++++.+|..+ .|++|.++..-|...|+.. |..+ +-.+..+..+|...- ....|+.++|+..|..-
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 5789999999 7999999999988888742 3211 124567778888762 34569999999998753
No 120
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=92.34 E-value=0.48 Score=30.55 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=45.9
Q ss_pred HHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCC----CCCc
Q 027506 92 SKQASFNKKEHDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDEN----KDGF 167 (222)
Q Consensus 92 ~l~~~F~~~D~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d----~~G~ 167 (222)
+|..+|..+-.+.+.+|.++|...|+.-...+.. +...+..++..|.++ ..+.
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~-----------------------~~~~~~~li~~~~~~~~~~~~~~ 57 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRL-----------------------TDEQAKELIEKFEPDERNRQKGQ 57 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTS-----------------------SHHHHHHHHHHHHHHHHHHCTTE
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhccccC-----------------------cHHHHHHHHHHHccchhhcccCC
Confidence 4678888888667899999999999875443320 133455555555433 4699
Q ss_pred ccHHHHHHHHHHh
Q 027506 168 IDAMELQRLLCIL 180 (222)
Q Consensus 168 I~~~el~~~l~~~ 180 (222)
+|.++|...|.+-
T Consensus 58 lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 58 LTLEGFTRFLFSD 70 (83)
T ss_dssp EEHHHHHHHHHST
T ss_pred cCHHHHHHHHCCC
Confidence 9999999998754
No 121
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.24 E-value=0.82 Score=40.67 Aligned_cols=74 Identities=27% Similarity=0.309 Sum_probs=54.4
Q ss_pred cCHHHHHHHHhhcC---CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHH
Q 027506 134 LGSAELSWLFEEKE---PSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKE 210 (222)
Q Consensus 134 ~d~~ef~~~~~~~~---~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~e 210 (222)
+++..|..++.... .....+.++|+.+|.+++|.|+..++...|..+... -.-+.+.-+++.+|++++ ..+.++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~--~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG--DALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh--hHHHHHHHHHhhccCCcc-cccccc
Confidence 56667777665432 234567889999999999999999999999877543 334677788888888877 555443
No 122
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=92.19 E-value=0.047 Score=47.90 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhcCcccccCCCCcHHHHHHHHHHHHH---HHhccccccCCCChhh
Q 027506 5 IQKWRAALTEASNLSGWDSMTIRSEAQLVNKIVGDVL---KKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 5 ~~~w~~~l~~~~~~~G~~~~~~~~~~~~i~~il~~~~---~~~~~~~~al~hpw~~ 57 (222)
++.|+..-..--..+-|+..+ +...++|++++...+ .+|.++.+||+|||+.
T Consensus 450 ~~~~r~~~~~~~~~~~~d~~s-~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp~f~ 504 (507)
T PLN03224 450 LNRWRMYKGQKYDFSLLDRNK-EAGWDLACKLITKRDQANRGRLSVGQALSHRFFL 504 (507)
T ss_pred HHHHHhhcccCCCcccccccC-hHHHHHHHHHhccCCCCcccCCCHHHHhCCCCcC
Confidence 345655433333344444444 457889999998765 5789999999999985
No 123
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=92.14 E-value=0.066 Score=43.78 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
+.++++|..++.+....+.+|.++++|||++-
T Consensus 335 ~eakdlisnLlvrda~~rlsa~~vlnhPw~~~ 366 (463)
T KOG0607|consen 335 SEAKDLISNLLVRDAKQRLSAAQVLNHPWVQR 366 (463)
T ss_pred HHHHHHHHHHHhccHHhhhhhhhccCCccccc
Confidence 46889999999999999999999999999983
No 124
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=0.41 Score=32.91 Aligned_cols=73 Identities=21% Similarity=0.128 Sum_probs=48.0
Q ss_pred cccCccHHHHHHHhhhcc-CCCCcccHHHHHHHHHHc------CCCC-C--cchhhhhhhcCHHHHHHHHhhcCCCHHHH
Q 027506 84 KSRNWDEKSKQASFNKKE-HDDESLSRDEVEMVMRKL------TLFC-S--FEDEELPQKLGSAELSWLFEEKEPSLEEV 153 (222)
Q Consensus 84 ~~~~~~~~~l~~~F~~~D-~~~G~i~~~el~~~l~~~------~~~~-~--~e~~~~~~~~d~~ef~~~~~~~~~~~~~l 153 (222)
...+++.+.--..|...| |++|.|+-=|+..++... |-.+ + +| .++ +.-+
T Consensus 60 ~a~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE-~El-------------------e~~i 119 (144)
T KOG4065|consen 60 VAKMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSE-AEL-------------------ERLI 119 (144)
T ss_pred hhhCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCH-HHH-------------------HHHH
Confidence 344555543335689999 999999999999998864 2211 1 11 111 1123
Q ss_pred HHHHHHhcCCCCCcccHHHHHHH
Q 027506 154 KEAFDVFDENKDGFIDAMELQRL 176 (222)
Q Consensus 154 ~~~F~~~D~d~~G~I~~~el~~~ 176 (222)
..+.+--|.|++|+|+..|+.+.
T Consensus 120 D~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 120 DAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHhcccccCCCceeeHHHHHhh
Confidence 44566678999999999998764
No 125
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=91.68 E-value=0.51 Score=38.73 Aligned_cols=61 Identities=25% Similarity=0.176 Sum_probs=50.5
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
++.=+|.++| |.||.|+..|+..+.. +. .+.-++..|+..|...+|.|+.
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~I~l--dk---------------------------nE~CikpFfnsCD~~kDg~iS~ 301 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRAIEL--DK---------------------------NEACIKPFFNSCDTYKDGSIST 301 (434)
T ss_pred hhhhhhhccccccccccCHHHhhhhhc--cC---------------------------chhHHHHHHhhhcccccCcccc
Confidence 7778899999 9999999999987642 11 1346788999999999999999
Q ss_pred HHHHHHHHHhC
Q 027506 171 MELQRLLCILG 181 (222)
Q Consensus 171 ~el~~~l~~~~ 181 (222)
.|.-..+...+
T Consensus 302 ~EWC~CF~k~~ 312 (434)
T KOG3555|consen 302 NEWCYCFQKSD 312 (434)
T ss_pred chhhhhhccCC
Confidence 99988887655
No 126
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.41 E-value=0.22 Score=40.52 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=47.0
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
.++=.|..+| |.++.|...|++-.=+- +........-.+..|++.|.|++-.||.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~------------------------l~k~s~~rkC~rk~~~yCDlNkDKkISl 389 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRV------------------------LLKKSKPRKCSRKFFKYCDLNKDKKISL 389 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHH------------------------HHhhccHHHHhhhcchhcccCCCceecH
Confidence 4555699999 99999999997653221 1111122335677899999999999999
Q ss_pred HHHHHHHHH
Q 027506 171 MELQRLLCI 179 (222)
Q Consensus 171 ~el~~~l~~ 179 (222)
.|++..|..
T Consensus 390 ~Ew~~CL~~ 398 (421)
T KOG4578|consen 390 DEWRGCLGV 398 (421)
T ss_pred HHHhhhhcc
Confidence 999998854
No 127
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.28 E-value=0.41 Score=38.73 Aligned_cols=84 Identities=26% Similarity=0.336 Sum_probs=54.1
Q ss_pred ccHHHHHHHHHHc-CCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC---C
Q 027506 107 LSRDEVEMVMRKL-TLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILG---L 182 (222)
Q Consensus 107 i~~~el~~~l~~~-~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~---~ 182 (222)
-|.+.|+.++... |+.+.. + .-+..|...|.|++|+++..||..++..-- .
T Consensus 224 GSkdQLkEVWEE~DgLdpn~--------f-----------------dPKTFF~LHD~NsDGfldeqELEaLFtkELEKvY 278 (442)
T KOG3866|consen 224 GSKDQLKEVWEESDGLDPNQ--------F-----------------DPKTFFALHDLNSDGFLDEQELEALFTKELEKVY 278 (442)
T ss_pred CcHHHHHHHHHHhcCCCccc--------C-----------------CcchheeeeccCCcccccHHHHHHHHHHHHHHhc
Confidence 3678888888765 455441 0 124578888999999999888887775310 1
Q ss_pred CCCCCHHHH-----------HHHHHHhCCCCCCceeHHHHHHHH
Q 027506 183 KEGFELENC-----------KKMIKTFDKNGDGRIDFKEFVKFM 215 (222)
Q Consensus 183 ~~~~~~~~~-----------~~~~~~~d~~~dg~I~~~eF~~~l 215 (222)
++.-.++.. +-+|+.+|.|.|..|+.+||++.-
T Consensus 279 dpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 279 DPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 111111111 346777899999999999998753
No 128
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.61 E-value=6.1 Score=36.87 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=61.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC--------CCCCHHHHHHHHHHhCCCC----C
Q 027506 136 SAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLK--------EGFELENCKKMIKTFDKNG----D 203 (222)
Q Consensus 136 ~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~--------~~~~~~~~~~~~~~~d~~~----d 203 (222)
++.|..++..- -....+..+|..+-.++.-++|.++|...|..-... |......+..+++.+..|+ .
T Consensus 207 ~e~f~~~l~kl-cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~ 285 (1189)
T KOG1265|consen 207 LEKFYRLLNKL-CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEK 285 (1189)
T ss_pred HHHHHHHHHhc-CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhc
Confidence 44555555432 123478999999998888999999999999854322 2367789999999998774 6
Q ss_pred CceeHHHHHHHHHh
Q 027506 204 GRIDFKEFVKFMEK 217 (222)
Q Consensus 204 g~I~~~eF~~~l~~ 217 (222)
|.++-+.|+.++..
T Consensus 286 gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 286 GQMSTDGFVRYLMG 299 (1189)
T ss_pred cccchhhhHHHhhC
Confidence 89999999998764
No 129
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=89.56 E-value=0.17 Score=45.12 Aligned_cols=84 Identities=10% Similarity=0.052 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhHHHHHHHHhhcccchhhhhhhhhccccccCc-cHHHHHHHhhhcc-CCCCc
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQFSAFIQVILSYRFLLYSSFLQSVQSCKSRNW-DEKSKQASFNKKE-HDDES 106 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~~F~~~D-~~~G~ 106 (222)
..++|+.++...|.+|+++.++|.|||+.-.... .............. ....... ..+-+.....+-. +.+|.
T Consensus 426 ~~dLi~~mL~~dP~kR~ta~e~L~Hpff~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (566)
T PLN03225 426 GWELLKSMMRFKGRQRISAKAALAHPYFDREGLL--GLSVMQNLRLQLFR---ATQQDYGEAAAWVVFLMAKSGTEKEGG 500 (566)
T ss_pred HHHHHHHHccCCcccCCCHHHHhCCcCcCCCCcc--ccccccccccccch---hhHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3489999999999999999999999999742211 00000000000000 0000001 1113334445555 77888
Q ss_pred ccHHHHHHHHH
Q 027506 107 LSRDEVEMVMR 117 (222)
Q Consensus 107 i~~~el~~~l~ 117 (222)
.+..+++.+..
T Consensus 501 ~~e~~~~~~~~ 511 (566)
T PLN03225 501 FTEAQLQELRE 511 (566)
T ss_pred ccHHHHHHhhh
Confidence 99999888654
No 130
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=88.68 E-value=1.2 Score=40.41 Aligned_cols=66 Identities=26% Similarity=0.439 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
..-+...|+..|++++|.++..+...++..+... +....+..++++.+..++|++...+|..+...
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~--l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ--LSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHh--hhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 4457778888888888888888888888877654 77777888888887777888888888776543
No 131
>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]
Probab=88.62 E-value=0.11 Score=42.22 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
.++++|+.+++..|..|.+..+.++|||+..
T Consensus 297 ~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~ 327 (400)
T KOG0604|consen 297 AAKDLIRKLLKTEPTERLTIEEVMDHPWINQ 327 (400)
T ss_pred HHHHHHHHHhcCCchhheeHHHhhcCchhcc
Confidence 5778999999999999999999999999973
No 132
>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an
Probab=88.04 E-value=0.16 Score=41.13 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...++|.+++...|.+|.++.++++|||+.
T Consensus 263 ~~~dli~~mL~~dp~~R~s~~~~l~h~~f~ 292 (303)
T cd07869 263 HAEDLASKLLQCFPKNRLSAQAALSHEYFS 292 (303)
T ss_pred HHHHHHHHHhccCchhccCHHHHhcCcccc
Confidence 467899999999999999999999999986
No 133
>PTZ00284 protein kinase; Provisional
Probab=86.13 E-value=0.19 Score=43.61 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|..++..+|.+|.++.++|+|||+..
T Consensus 414 ~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~ 443 (467)
T PTZ00284 414 LCDLIYGLLHYDRQKRLNARQMTTHPYVLK 443 (467)
T ss_pred HHHHHHHhCCcChhhCCCHHHHhcCccccc
Confidence 458999999999999999999999999973
No 134
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.04 E-value=1.9 Score=37.24 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=48.6
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
...+.|..+- |-+|.|+-.--++.+.+..+. ..+|..+++..|.|.+|.++.
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKSklp---------------------------i~ELshIWeLsD~d~DGALtL 284 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKSKLP---------------------------IEELSHIWELSDVDRDGALTL 284 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhccCc---------------------------hHHHHHHHhhcccCccccccH
Confidence 4445678888 888888888777777654433 337889999999999999999
Q ss_pred HHHHHHHHH
Q 027506 171 MELQRLLCI 179 (222)
Q Consensus 171 ~el~~~l~~ 179 (222)
.||..++.-
T Consensus 285 ~EFcAAfHL 293 (737)
T KOG1955|consen 285 SEFCAAFHL 293 (737)
T ss_pred HHHHhhHhh
Confidence 999999874
No 135
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.65 E-value=0.27 Score=42.41 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 30 AQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 30 ~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
++|+.=|+.-+|.+|.+|.++|+|||+..
T Consensus 527 sdFL~PmLef~PeKR~tA~~cl~hPwLn~ 555 (590)
T KOG1290|consen 527 SDFLSPMLEFDPEKRPTAAQCLKHPWLNP 555 (590)
T ss_pred HHHHHHHHhcCccccccHHHHhcCccccC
Confidence 46888889999999999999999999983
No 136
>PLN02222 phosphoinositide phospholipase C 2
Probab=84.32 E-value=4.8 Score=36.04 Aligned_cols=67 Identities=18% Similarity=0.352 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC-CCCCceeHHHHHHHHHhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDK-NGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~-~~dg~I~~~eF~~~l~~~ 218 (222)
...+..+|..+-. ++.++.++|...|.........+.+.+..++..+.. ...+.++++.|..+|...
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 4478999999853 579999999999988654434677888889887632 235669999999999753
No 137
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=84.21 E-value=0.31 Score=40.68 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 30 AQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 30 ~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
.++|++|+..+|.+|.++.+||.|||+..
T Consensus 383 fDLl~~mL~fDP~~RiTl~EAL~HpFF~~ 411 (415)
T KOG0671|consen 383 FDLLRRMLEFDPARRITLREALSHPFFAR 411 (415)
T ss_pred HHHHHHHHccCccccccHHHHhcCHHhhc
Confidence 47999999999999999999999999863
No 138
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=84.07 E-value=1.1 Score=39.87 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=45.7
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
-+..+|..+| +.+|.||..++..+|..+-.... .+++.-.|+.+|.+++ ..+.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~-------------------------~ek~~l~y~lh~~p~~-~~d~ 609 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDA-------------------------LEKLKLLYKLHDPPAD-ELDR 609 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhH-------------------------HHHHHHHHhhccCCcc-cccc
Confidence 4568899999 99999999999998876533221 3478889999999999 9998
Q ss_pred HHH
Q 027506 171 MEL 173 (222)
Q Consensus 171 ~el 173 (222)
++.
T Consensus 610 e~~ 612 (671)
T KOG4347|consen 610 EEV 612 (671)
T ss_pred ccc
Confidence 888
No 139
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.87 E-value=1 Score=37.46 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCCCCCceeHHHHHH
Q 027506 148 PSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFEL-ENCKKMIKTFDKNGDGRIDFKEFVK 213 (222)
Q Consensus 148 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~-~~~~~~~~~~d~~~dg~I~~~eF~~ 213 (222)
.....++++|+.+|+.++|+|+..-++.++...... +++ +.+..+=..+|+.+-|.|-..+|..
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~--vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRL--VSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhccc--ccCHHHHHHhcCccChhhcceEEeccccc
Confidence 345789999999999999999999999999988743 443 3343333335666666666555543
No 140
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=83.48 E-value=8.7 Score=35.98 Aligned_cols=83 Identities=20% Similarity=0.123 Sum_probs=63.3
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcc---hhhhhh---h--------cCHHHHHHHHhhc---CCCHHHH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFE---DEELPQ---K--------LGSAELSWLFEEK---EPSLEEV 153 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e---~~~~~~---~--------~d~~ef~~~~~~~---~~~~~~l 153 (222)
+|+..|..++ ...|.++.+++..++-.+|.....+ +.+++. . +.+.+|...+.+. .....++
T Consensus 748 ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r~ 827 (890)
T KOG0035|consen 748 ELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELRA 827 (890)
T ss_pred HHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHHH
Confidence 8899999999 8889999999999999999877642 333322 2 3456777777543 4456778
Q ss_pred HHHHHHhcCCCCCcccHHHHHH
Q 027506 154 KEAFDVFDENKDGFIDAMELQR 175 (222)
Q Consensus 154 ~~~F~~~D~d~~G~I~~~el~~ 175 (222)
..+|+.+-++.. +|..+||..
T Consensus 828 i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 828 ILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHcchh-HHHHHHHHh
Confidence 889999977666 899999887
No 141
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=82.68 E-value=0.4 Score=39.78 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|+++.+++.|||+..
T Consensus 286 ~~~~li~~mL~~dP~~Rps~~ell~hp~~~~ 316 (355)
T cd07874 286 QARDLLSKMLVIDPAKRISVDEALQHPYINV 316 (355)
T ss_pred HHHHHHHHHhcCCchhcCCHHHHhcCcchhc
Confidence 3578999999999999999999999999974
No 142
>PTZ00036 glycogen synthase kinase; Provisional
Probab=82.55 E-value=0.35 Score=41.67 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
.+.++|.+++...|.+|.++.+++.|||+.-
T Consensus 326 ~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~ 356 (440)
T PTZ00036 326 DAINFISQFLKYEPLKRLNPIEALADPFFDD 356 (440)
T ss_pred HHHHHHHHHCCCChhHCcCHHHHhCChhHHh
Confidence 5778999999999999999999999999863
No 143
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=82.21 E-value=1.7 Score=31.12 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC-------CCCceeHHHHHHHHHhhhh
Q 027506 165 DGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKN-------GDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 165 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~-------~dg~I~~~eF~~~l~~~~~ 220 (222)
=+.||..||.++-.-.. -+...+..++++|..+ .++.|+|+.|..+|.-.+.
T Consensus 5 ~~~lsp~eF~qLq~y~e----ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe 63 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE----YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE 63 (138)
T ss_dssp -S-S-HHHHHHHHHHHH----H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT
T ss_pred eeccCHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc
Confidence 46788889888765432 1234688888888433 3447999999999987653
No 144
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=82.04 E-value=1.4 Score=30.29 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 186 FELENCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 186 ~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
+++++++.+..++-.|..|.|.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 7899999999999999999999999998764
No 145
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=82.00 E-value=13 Score=24.87 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=56.7
Q ss_pred HHHHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCccc
Q 027506 90 EKSKQASFNKKEHDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFID 169 (222)
Q Consensus 90 ~~~l~~~F~~~D~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~ 169 (222)
.+.|+..|..+-+ .++..+.+.+.+.+|+..+. +..+.. ..... .+...+++..+=......=|
T Consensus 3 ~~~l~~~f~~i~~---~V~~~~Wk~laR~LGLse~~-I~~i~~-----------~~~~~-~eq~~qmL~~W~~~~G~~At 66 (96)
T cd08315 3 QETLRRSFDHFIK---EVPFDSWNRLMRQLGLSENE-IDVAKA-----------NERVT-REQLYQMLLTWVNKTGRKAS 66 (96)
T ss_pred HhHHHHHHHHHHH---HCCHHHHHHHHHHcCCCHHH-HHHHHH-----------HCCCC-HHHHHHHHHHHHHhhCCCcH
Confidence 3456777777652 26688999999999986541 333221 11122 55677777777444444667
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHH
Q 027506 170 AMELQRLLCILGLKEGFELENCKKMI 195 (222)
Q Consensus 170 ~~el~~~l~~~~~~~~~~~~~~~~~~ 195 (222)
...|.++|..++.+ ...+.++..+
T Consensus 67 ~~~L~~aL~~~~~~--~~Ae~I~~~l 90 (96)
T cd08315 67 VNTLLDALEAIGLR--LAKESIQDEL 90 (96)
T ss_pred HHHHHHHHHHcccc--cHHHHHHHHH
Confidence 88999999999876 5666666544
No 146
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=81.74 E-value=0.43 Score=38.44 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|.++.+++.|||+..
T Consensus 261 ~~~~li~~ml~~dp~~R~t~~eil~h~~f~~ 291 (301)
T cd07873 261 DGAELLSKLLQFEGRKRISAEEAMKHPYFHC 291 (301)
T ss_pred HHHHHHHHHhcCCcccCcCHHHHhcCccccc
Confidence 4578999999999999999999999999963
No 147
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=81.60 E-value=0.46 Score=38.50 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|.++.+++.|||+.-
T Consensus 261 ~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~ 291 (309)
T cd07872 261 EGIELLTKFLQYESKKRISAEEAMKHAYFRS 291 (309)
T ss_pred HHHHHHHHhccCChhhCCCHHHHhcChhhhh
Confidence 4678999999999999999999999999973
No 148
>PLN02228 Phosphoinositide phospholipase C
Probab=81.47 E-value=9 Score=34.24 Aligned_cols=68 Identities=13% Similarity=0.318 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHHhh
Q 027506 149 SLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKN----GDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 149 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~----~dg~I~~~eF~~~l~~~ 218 (222)
....+..+|..+-. ++.++.++|...|.........+.+.+.+++..+... ..|.++.+.|..+|...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 45578899998853 3689999999999876543335667888999988643 34679999999998754
No 149
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=81.22 E-value=0.45 Score=39.57 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|.++.+++.|||+..
T Consensus 290 ~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~ 320 (359)
T cd07876 290 QARDLLSKMLVIDPDKRISVDEALRHPYITV 320 (359)
T ss_pred hHHHHHHHHhccCcccCCCHHHHhcCchhhh
Confidence 4678999999999999999999999999874
No 150
>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10. Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing
Probab=80.92 E-value=0.54 Score=38.02 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|.++.+++.|||+.-
T Consensus 265 ~~~~li~~ml~~dp~~R~t~~~il~h~~f~~ 295 (309)
T cd07845 265 AGLRLLNFLLMYDPKKRATAEEALESSYFKE 295 (309)
T ss_pred HHHHHHHHHhcCChhhCcCHHHHhcChhhcc
Confidence 4678999999999999999999999999973
No 151
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=79.72 E-value=0.44 Score=39.69 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|.++.+++.|||+..
T Consensus 293 ~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~ 323 (364)
T cd07875 293 QARDLLSKMLVIDASKRISVDEALQHPYINV 323 (364)
T ss_pred HHHHHHHHhcCcCcccCCCHHHHhcCccccc
Confidence 4568999999999999999999999999863
No 152
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=79.68 E-value=14 Score=25.21 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 027506 153 VKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVK 213 (222)
Q Consensus 153 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~ 213 (222)
+..+|-.++..++-..+..+++.+|.+.|.. +.++.++.++.++. |+ +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E--~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAE--IDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcc--cCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 4567888888999999999999999999987 88999999999883 33 4555544
No 153
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=78.51 E-value=0.75 Score=40.78 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 30 AQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 30 ~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
.++|++++..+|..|.+..+||+|||+.-
T Consensus 479 ~dflk~~L~~dP~~R~tp~qal~Hpfl~~ 507 (586)
T KOG0667|consen 479 IDFLKRCLEWDPAERITPAQALNHPFLTG 507 (586)
T ss_pred HHHHHHHhccCchhcCCHHHHhcCccccc
Confidence 57999999999999999999999999983
No 154
>PHA03212 serine/threonine kinase US3; Provisional
Probab=78.28 E-value=0.73 Score=39.05 Aligned_cols=30 Identities=13% Similarity=-0.050 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...++|.+++...|.+|+++.++|.|||+.
T Consensus 351 ~l~~Li~~mL~~dP~~Rpta~elL~hp~f~ 380 (391)
T PHA03212 351 DLEYLICKMLAFDAHHRPSAEALLDFAAFQ 380 (391)
T ss_pred hHHHHHHHHhcCChhhCCCHHHHhcChhhc
Confidence 356789999999999999999999999986
No 155
>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha. Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype
Probab=78.08 E-value=0.96 Score=37.00 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
..++|+.++...|.+|+++.+++.|||+.
T Consensus 283 ~~~li~~~l~~dP~~Rpt~~ell~~p~f~ 311 (327)
T cd08227 283 FHHFVEQCLQRNPDARPSASTLLNHSFFK 311 (327)
T ss_pred HHHHHHHHHhhCchhcCCHHHHhcChhhh
Confidence 44789999999999999999999999986
No 156
>PLN02230 phosphoinositide phospholipase C 4
Probab=77.48 E-value=14 Score=33.26 Aligned_cols=68 Identities=15% Similarity=0.358 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCC-------CCCCceeHHHHHHHHHh
Q 027506 149 SLEEVKEAFDVFDENKDGFIDAMELQRLLCILGL-KEGFELENCKKMIKTFDK-------NGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 149 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~d~-------~~dg~I~~~eF~~~l~~ 217 (222)
....++.+|..|- ++++.+|.++|...|..... +...+.+.+..++..+-. -+.+.++++.|..+|..
T Consensus 27 p~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3457899999995 44489999999999998653 223466777778765422 12346999999998865
No 157
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.14 E-value=1 Score=42.18 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
...+..+|...|.+.+|.|+..+.+..+...| ++...+..+....|..+.|.|++.+|+-.|..
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g----l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPFG----LSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccCC----CChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 45677799999999999999999999987755 56678999999999999999999998766543
No 158
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=76.60 E-value=2.1 Score=37.77 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
.+-++|.++++.-..+|.+..++++|||.+
T Consensus 794 ~AidlIn~LLqVkm~kRysvdk~lsh~Wlq 823 (888)
T KOG4236|consen 794 EAIDLINNLLQVKMRKRYSVDKSLSHPWLQ 823 (888)
T ss_pred HHHHHHHHHHHHHHHHhcchHhhccchhhh
Confidence 577899999999999999999999999997
No 159
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=76.45 E-value=0.79 Score=37.76 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|.+++...|.+|.++.+++.|||+..
T Consensus 274 ~~~li~~mL~~dp~~R~s~~ell~hp~~~~ 303 (343)
T cd07878 274 AIDLLEKMLVLDSDKRISASEALAHPYFSQ 303 (343)
T ss_pred HHHHHHHHcCCChhhCCCHHHHhcCcchhc
Confidence 568999999999999999999999999964
No 160
>PHA03207 serine/threonine kinase US3; Provisional
Probab=75.67 E-value=1.2 Score=37.70 Aligned_cols=31 Identities=13% Similarity=-0.038 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|++++...|.+|+++.+++.|||+..
T Consensus 350 ~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~ 380 (392)
T PHA03207 350 DVEYLIAKMLTFDQEFRPSAQDILSLPLFTK 380 (392)
T ss_pred hHHHHHHHHhccChhhCCCHHHHhhCchhhc
Confidence 4567899999999999999999999999973
No 161
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=75.31 E-value=3.9 Score=27.41 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 165 DGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 165 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
||.++..|...+-..+...-+++.++...++..+........++.+|...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555555444433221101134455555555544433334555555555544
No 162
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=74.88 E-value=0.91 Score=37.61 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|.+++...|.+|+++.+++.|||++.
T Consensus 287 ~~~li~~~L~~dP~~R~t~~eiL~~~~~~~ 316 (353)
T cd07850 287 ARDLLSKMLVIDPEKRISVDDALQHPYINV 316 (353)
T ss_pred HHHHHHHHcCCChhhCcCHHHHhcChhHhh
Confidence 568999999999999999999999999873
No 163
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=74.42 E-value=0.86 Score=37.27 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...++|.+++...|.+|+++.+++.|||+.
T Consensus 265 ~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~ 294 (338)
T cd07859 265 LALRLLERLLAFDPKDRPTAEEALADPYFK 294 (338)
T ss_pred HHHHHHHHHcCcCcccCCCHHHHhcCchhh
Confidence 457899999999999999999999999986
No 164
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=74.24 E-value=0.78 Score=38.34 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|.++.+++.|||+.-
T Consensus 263 ~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~ 293 (372)
T cd07853 263 EAVHLLCRMLVFDPDKRISAADALAHPYLDE 293 (372)
T ss_pred HHHHHHHHhCCCChhhCcCHHHHhcCHhhCC
Confidence 4678999999999999999999999999874
No 165
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.12 E-value=1.2 Score=35.48 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=30.0
Q ss_pred CCcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 26 IRSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 26 ~~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++.+++..++..+|.+|..+.+|++|.|+-.
T Consensus 288 d~~a~dLle~ll~~DP~kR~~ad~alnh~~F~k 320 (376)
T KOG0669|consen 288 DDEALDLLEKLLKLDPTKRIDADQALNHDFFWK 320 (376)
T ss_pred ChhHHHHHHHHhccCcccCcchHhhhchhhhhc
Confidence 348899999999999999999999999999864
No 166
>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.65 E-value=0.85 Score=39.31 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhHH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQFS 59 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~~ 59 (222)
..+.++|.+++..+|.+|++|.+|+.||+++..
T Consensus 265 ~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~ 297 (538)
T KOG0661|consen 265 SEAASLIERLLAWDPDKRPTASQALQHPFFQVG 297 (538)
T ss_pred HHHHHHHHHHhcCCCccCccHHHHhcCcccccc
Confidence 357789999999999999999999999999843
No 167
>PLN02223 phosphoinositide phospholipase C
Probab=72.94 E-value=17 Score=32.31 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHH---HHhCCCCCCCHHHHHHHHHHhCCCC--------CCceeHHHHHHHHHh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLL---CILGLKEGFELENCKKMIKTFDKNG--------DGRIDFKEFVKFMEK 217 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l---~~~~~~~~~~~~~~~~~~~~~d~~~--------dg~I~~~eF~~~l~~ 217 (222)
.+.++.+|..+ .+++|..+.+.|.+.| .........+.++.+.++..+-... .+.++.+.|..+|..
T Consensus 15 p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 45788999999 4788999999999999 4433323367778888887653321 255999999999865
No 168
>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta. Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig
Probab=72.40 E-value=0.92 Score=37.14 Aligned_cols=30 Identities=20% Similarity=0.097 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|++++...|.+|+++.+++.|||+..
T Consensus 284 ~~~li~~~l~~dP~~Rpta~e~l~~~~~~~ 313 (328)
T cd08226 284 FQNLVELCLQQDPEKRPSASSLLSHAFFKQ 313 (328)
T ss_pred HHHHHHHHccCCcccCCCHHHHhhCHHHHH
Confidence 567888899989999999999999999874
No 169
>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=72.39 E-value=1.3 Score=39.95 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
+++-++|.+|+..++.+|.+..++++|||+.
T Consensus 237 ~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~ 267 (786)
T KOG0588|consen 237 SEAQDLLRRMLDVDPSTRITTEEILKHPFLS 267 (786)
T ss_pred HHHHHHHHHHhccCccccccHHHHhhCchhh
Confidence 3566799999999999999999999999986
No 170
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=72.31 E-value=1 Score=39.82 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
.+++++|.+||..+|..|+++.++|.|+|+.
T Consensus 243 ~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~ 273 (592)
T KOG0575|consen 243 AEAKDLIRKLLRPNPSERPSLDEVLDHPFFK 273 (592)
T ss_pred HHHHHHHHHHhcCCcccCCCHHHHhcCHhhh
Confidence 3688999999999999999999999999993
No 171
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=72.23 E-value=8.9 Score=23.98 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhh
Q 027506 187 ELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 187 ~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~ 220 (222)
+.+....+...++.=..++|+-++|+..|+...+
T Consensus 23 ~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 23 PPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3344444444444334556666666666665554
No 172
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=72.15 E-value=1.2 Score=36.77 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|+++.+++.|||+..
T Consensus 275 ~~~~li~~~L~~dP~~R~t~~ell~h~~~~~ 305 (342)
T cd07854 275 EALDFLEQILTFNPMDRLTAEEALMHPYMSC 305 (342)
T ss_pred HHHHHHHHHhCCCchhccCHHHHhCCCcccc
Confidence 4568999999999999999999999999974
No 173
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=72.01 E-value=1 Score=37.04 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|..|+++.+++.|||+..
T Consensus 276 ~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~ 306 (331)
T cd06649 276 DFQEFVNKCLIKNPAERADLKMLMNHTFIKR 306 (331)
T ss_pred HHHHHHHHHccCCcccCCCHHHHhcChHHhh
Confidence 4678999999999999999999999999874
No 174
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=71.54 E-value=1.7 Score=35.79 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhHH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQFS 59 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~~ 59 (222)
+++++.+++..+|.+|.++.+|++|+++..+
T Consensus 313 a~~LL~klL~yDP~kRIta~qAleh~yF~~d 343 (438)
T KOG0666|consen 313 ALDLLQKLLTYDPIKRITAEQALEHPYFTED 343 (438)
T ss_pred HHHHHHHHhccCchhhccHHHHhcccccccC
Confidence 8999999999999999999999999998753
No 175
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=71.17 E-value=1.3 Score=36.60 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..+-+++++++.-+|.+|.++.+||.||++..
T Consensus 284 p~AidLlekmL~fdP~kRita~eAL~hPYl~~ 315 (359)
T KOG0660|consen 284 PLAIDLLEKMLVFDPKKRITAEEALAHPYLAP 315 (359)
T ss_pred HHHHHHHHHHhccCccccCCHHHHhcChhhhh
Confidence 46778999999999999999999999998764
No 176
>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein. Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc
Probab=70.01 E-value=1.3 Score=35.84 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|..++...|.+|+++.++++|||+..
T Consensus 271 ~~~li~~~l~~~P~~Rpt~~~ll~~p~~~~ 300 (314)
T cd08216 271 FHQFVELCLQRDPESRPSASQLLNHSFFKQ 300 (314)
T ss_pred HHHHHHHHhhcCCCcCcCHHHHhcCchHhh
Confidence 457889999999999999999999999863
No 177
>PLN02952 phosphoinositide phospholipase C
Probab=69.69 E-value=18 Score=32.66 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=41.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhh
Q 027506 164 KDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~ 220 (222)
+.|.++.+++....+.+......+..++..+|..+..++ +.++.++|..+|...-+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC
Confidence 468999999987777665332245678999999986544 57999999999887544
No 178
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=69.61 E-value=1.6 Score=36.15 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
....+++..++..+|.+|.+|.+||+|+|+.
T Consensus 335 e~g~~Lln~llt~dP~kR~tA~~~L~h~~F~ 365 (419)
T KOG0663|consen 335 EQGFDLLNKLLTYDPGKRITAEDGLKHEYFR 365 (419)
T ss_pred hhHHHHHHHHhccCccccccHHHhhcccccc
Confidence 3578999999999999999999999999997
No 179
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=69.13 E-value=1.2 Score=35.11 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
..++++|..++...|..+....+++.|||+.
T Consensus 247 ~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~ 277 (281)
T KOG0580|consen 247 GGAADLISRLLVKNPIERLALTEVMDHPWIV 277 (281)
T ss_pred hhHHHHHHHHhccCccccccHHHHhhhHHHH
Confidence 4688999999999999999999999999986
No 180
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=68.92 E-value=1.8 Score=36.60 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
..++++.+++...|.+|.+|.+||+||++.
T Consensus 356 ~~~dlLdk~le~np~kRitAEeALkHpFF~ 385 (418)
T KOG1167|consen 356 LLLDLLDKCLELNPQKRITAEDALKHPFFD 385 (418)
T ss_pred HHHHHHHHHccCChhhcccHHHHhcCcCCc
Confidence 578999999999999999999999999998
No 181
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=68.80 E-value=1.5 Score=36.21 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|..|+++.+++.|||+..
T Consensus 273 ~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~ 303 (343)
T cd07851 273 LAIDLLEKMLVLDPDKRITAAEALAHPYLAE 303 (343)
T ss_pred HHHHHHHHhCCCChhhCCCHHHHhcCCCccc
Confidence 5678999999999999999999999999983
No 182
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=68.78 E-value=38 Score=24.70 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=34.3
Q ss_pred HHHhhhc----cCCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCccc
Q 027506 94 QASFNKK----EHDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFID 169 (222)
Q Consensus 94 ~~~F~~~----D~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~ 169 (222)
+.+|..+ ..+...++...|..+++.+++-... .+...+--+|..+-..+...|+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k----------------------~t~tdvDiiF~Kvk~k~~~~I~ 59 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKK----------------------LTSTDVDIIFSKVKAKGARKIT 59 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SS----------------------S-HHHHHHHHHHHT-SS-SEEE
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCC----------------------CchHHHHHHHHHhhcCCCcccC
Confidence 4555555 2444567777787777776653321 1123445566665444445566
Q ss_pred HHHHHHHHHHh
Q 027506 170 AMELQRLLCIL 180 (222)
Q Consensus 170 ~~el~~~l~~~ 180 (222)
.++|..+|..+
T Consensus 60 f~~F~~aL~~l 70 (154)
T PF05517_consen 60 FEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 183
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=67.96 E-value=2.7 Score=33.09 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
.++-+++.+++..+-..|.+|.+|+.|||+..
T Consensus 296 peaiDlldklLrYDHqeRlTakEam~HpyF~~ 327 (338)
T KOG0668|consen 296 PEAIDLLDKLLRYDHQERLTAKEAMAHPYFAP 327 (338)
T ss_pred hHHHHHHHHHHhhccccccchHHHhcCchHHH
Confidence 46779999999999999999999999999975
No 184
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=67.47 E-value=2.5 Score=34.23 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHhcc----ccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKS----SAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~----~~~al~hpw~~~ 58 (222)
...++|+.++...+..|.+ +.+++.|||+..
T Consensus 260 ~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~ 294 (316)
T cd05574 260 SARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRG 294 (316)
T ss_pred HHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhc
Confidence 4678889999999999999 889999999873
No 185
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=67.33 E-value=6.6 Score=18.30 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=7.5
Q ss_pred cCCCCCcccHHHHH
Q 027506 161 DENKDGFIDAMELQ 174 (222)
Q Consensus 161 D~d~~G~I~~~el~ 174 (222)
|.|++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 45566666655554
No 186
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=67.07 E-value=18 Score=24.61 Aligned_cols=49 Identities=10% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHhcCCCCCcccHHHHHHHHHHh----------CCCCCCCHHHHHHHHHHhCCCCCCceeH
Q 027506 158 DVFDENKDGFIDAMELQRLLCIL----------GLKEGFELENCKKMIKTFDKNGDGRIDF 208 (222)
Q Consensus 158 ~~~D~d~~G~I~~~el~~~l~~~----------~~~~~~~~~~~~~~~~~~d~~~dg~I~~ 208 (222)
+.||+..+-+||.+++.+++..- | ..++...+.+|+-+...++...++-
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg--eDiT~~iL~QII~E~E~~g~~~lp~ 68 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG--DDLTRSILLQIIAEEESGGEPVLST 68 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC--chhHHHHHHHHHHHHHhCCCCCCCH
Confidence 35778888888888888877631 2 1255556666666665555544443
No 187
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=66.89 E-value=20 Score=30.70 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=50.4
Q ss_pred cHHHHHHHhhhcc-CCCCcccHHHHHHHHHH-cCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCC
Q 027506 89 DEKSKQASFNKKE-HDDESLSRDEVEMVMRK-LTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDG 166 (222)
Q Consensus 89 ~~~~l~~~F~~~D-~~~G~i~~~el~~~l~~-~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G 166 (222)
..+.++.+-..+| |.+|.|+.+|=...++. +.+..+ ..+=...|.. .+.
T Consensus 66 g~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~-------------------------~~kr~~~fH~----dD~ 116 (575)
T KOG4403|consen 66 GYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDS-------------------------TRKRSEKFHG----DDK 116 (575)
T ss_pred hHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccc-------------------------hhhhhhhccC----Ccc
Confidence 3458889999999 99999999998777764 222222 1111225543 467
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 027506 167 FIDAMELQRLLCILGLKEGFELENCKKMIK 196 (222)
Q Consensus 167 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~ 196 (222)
.||.++|.+++..........++.++-++.
T Consensus 117 ~ItVedLWeaW~~Sev~nWT~e~tvqWLi~ 146 (575)
T KOG4403|consen 117 HITVEDLWEAWKESEVHNWTNERTVQWLIN 146 (575)
T ss_pred ceeHHHHHHHHHhhhhhcchHHHHHHHHHH
Confidence 899999999988655433333344444444
No 188
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=66.39 E-value=2 Score=33.98 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|..|+++.++++|||+..
T Consensus 237 ~~~~li~~~l~~~p~~Rps~~~il~~~~~~~ 267 (280)
T cd06611 237 SFNDFLKSCLVKDPDDRPTAAELLKHPFVSD 267 (280)
T ss_pred HHHHHHHHHhccChhhCcCHHHHhcChhhcc
Confidence 5778999999999999999999999999874
No 189
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=66.33 E-value=2.3 Score=34.14 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
+++-+++..++...|.+|.++.|||+|+|+.
T Consensus 255 ~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~ 285 (318)
T KOG0659|consen 255 SDALDLLSKMLTYNPKKRITASQALKHPYFK 285 (318)
T ss_pred HHHHHHHHhhhccCchhcccHHHHhcchhhh
Confidence 4677899999999999999999999999997
No 190
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=66.20 E-value=2.1 Score=35.17 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|++++...|.+|+++.++++|||+..
T Consensus 266 ~~~~li~~~l~~~P~~Rps~~ell~h~~~~~ 296 (337)
T cd07858 266 LAIDLLEKMLVFDPSKRITVEEALAHPYLAS 296 (337)
T ss_pred HHHHHHHHHhcCChhhccCHHHHHcCcchhh
Confidence 3568999999999999999999999999864
No 191
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=65.91 E-value=1.9 Score=35.86 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=29.1
Q ss_pred CCcH-HHHHHHHHHHHHHHhccccccCCCChhhHH
Q 027506 26 IRSE-AQLVNKIVGDVLKKLKSSAKKNQHPFNQFS 59 (222)
Q Consensus 26 ~~~~-~~~i~~il~~~~~~~~~~~~al~hpw~~~~ 59 (222)
++++ ..||..++.+.|..|.++.|.+.|||+...
T Consensus 307 fS~ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~ 341 (364)
T KOG0581|consen 307 FSPEFRSFVSCCLRKDPSERPSAKQLLQHPFIKKF 341 (364)
T ss_pred CCHHHHHHHHHHhcCCcccCCCHHHHhcCHHHhhc
Confidence 4544 469999999999999999999999999853
No 192
>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as
Probab=65.19 E-value=3 Score=33.28 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHhcc-----ccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKS-----SAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~-----~~~al~hpw~~ 57 (222)
...++|+.++...|.+|.+ +.++++|||+.
T Consensus 231 ~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~ 265 (285)
T cd05630 231 DARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFK 265 (285)
T ss_pred HHHHHHHHHhhcCHHHccCCCCCchHHHHcChhhh
Confidence 4678999999999999998 67999999986
No 193
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=65.04 E-value=1.9 Score=35.34 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
....++|+.++...|.+|+++.+++.|||+..
T Consensus 268 ~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~ 299 (334)
T cd07855 268 PEALDLLSQMLQFDPEERITVEQALQHPFLAQ 299 (334)
T ss_pred HHHHHHHHHHccCChhhCcCHHHHHhChhhhh
Confidence 35678999999999999999999999999973
No 194
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.94 E-value=2 Score=38.84 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=28.8
Q ss_pred CCC-cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 25 TIR-SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 25 ~~~-~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
+|+ .=+++++.++...+..|+++++.+.|||+.
T Consensus 260 ~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~ 293 (1187)
T KOG0579|consen 260 HWSRSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQ 293 (1187)
T ss_pred hhhhHHHHHHHHHHhcCCccCCCHHHHhhCcccc
Confidence 343 356899999999999999999999999997
No 195
>PHA03210 serine/threonine kinase US3; Provisional
Probab=64.74 E-value=1.8 Score=38.03 Aligned_cols=30 Identities=10% Similarity=-0.130 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|.+++..+|.+|.++.+++.|||+.-
T Consensus 430 ~~~li~kmL~~DP~~Rpsa~elL~hp~f~~ 459 (501)
T PHA03210 430 FEYPLVKMLTFDWHLRPGAAELLALPLFSA 459 (501)
T ss_pred HHHHHHHHhccCcccCcCHHHHhhChhhhc
Confidence 445688999999999999999999999963
No 196
>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and
Probab=64.66 E-value=2.1 Score=34.96 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|.+|+++.+++.|||+.-
T Consensus 264 ~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~ 294 (330)
T cd07834 264 EAIDLLEKMLVFDPKKRITADEALAHPYLAQ 294 (330)
T ss_pred HHHHHHHHHccCChhhCCCHHHHHhCccHHh
Confidence 4678999999999999999999999999974
No 197
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=64.65 E-value=2.2 Score=35.16 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|.+|.++.+++.|||+.-
T Consensus 272 ~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~ 302 (342)
T cd07879 272 QAVDLLEKMLELDVDKRLTATEALEHPYFDS 302 (342)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHhcCcchhh
Confidence 3568999999999999999999999999874
No 198
>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i
Probab=63.94 E-value=3.1 Score=33.22 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHhcc-----ccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKS-----SAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~-----~~~al~hpw~~~ 58 (222)
...++|+.++...|.+|.+ +.++++|||+.-
T Consensus 231 ~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~ 266 (285)
T cd05631 231 DAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKN 266 (285)
T ss_pred HHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcC
Confidence 5678999999999999986 568999999863
No 199
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=63.83 E-value=2.7 Score=31.87 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=38.6
Q ss_pred HHHhcC-CCCCcccHHHHHHHHHHhCCCCCCC-HHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 027506 157 FDVFDE-NKDGFIDAMELQRLLCILGLKEGFE-LENCKKMIKTFDKNGDGRIDFKEFVKFM 215 (222)
Q Consensus 157 F~~~D~-d~~G~I~~~el~~~l~~~~~~~~~~-~~~~~~~~~~~d~~~dg~I~~~eF~~~l 215 (222)
|-.+|+ -.+|++|-.||.-+-.. .++ +.-+..+|...|.|+||.|+.+|+..++
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap-----~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAP-----LIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCC-----cccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 445554 35899999998654221 122 3456788999999999999999997665
No 200
>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is
Probab=63.81 E-value=2.1 Score=34.27 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|..|+++.+++.|||+.-
T Consensus 257 ~~~~li~~~l~~~P~~R~s~~e~l~~~~~~~ 287 (298)
T cd07841 257 DALDLLQRLLTLNPNKRITARQALEHPYFSN 287 (298)
T ss_pred HHHHHHHHHhcCCcccCcCHHHHhhCccccC
Confidence 4567899999999999999999999999873
No 201
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=63.68 E-value=2.2 Score=34.98 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|+++.+++.|||+..
T Consensus 267 ~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~ 297 (336)
T cd07849 267 KALDLLDKMLTFNPHKRITVEEALAHPYLEQ 297 (336)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHhcCccccc
Confidence 4678999999999999999999999999873
No 202
>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down
Probab=63.64 E-value=2.4 Score=34.34 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|+++.+++.|||+..
T Consensus 262 ~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~ 292 (308)
T cd06615 262 EFQDFVDKCLKKNPKERADLKELTKHPFIKR 292 (308)
T ss_pred HHHHHHHHHccCChhhCcCHHHHhcChhhhh
Confidence 4678999999999999999999999999964
No 203
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=63.39 E-value=2.3 Score=34.09 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHHHhcc-----ccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKS-----SAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~-----~~~al~hpw~~ 57 (222)
...++|++++...|.+|.+ +.+++.|||+.
T Consensus 224 ~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~ 258 (291)
T cd05612 224 YAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFK 258 (291)
T ss_pred HHHHHHHHHcCCCHHHccCCccCCHHHHhcCcccc
Confidence 4678999999999999985 66999999996
No 204
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=63.17 E-value=2.8 Score=37.33 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFN 56 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~ 56 (222)
.+++++|..++...|.+|.++.+++.|||+
T Consensus 537 ~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~ 566 (612)
T KOG0603|consen 537 DEAKDLLQQLLQVDPALRLGADEIGAHPWF 566 (612)
T ss_pred HHHHHHHHHhccCChhhCcChhhhccCcch
Confidence 468999999999999999999999999999
No 205
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=63.12 E-value=2.6 Score=34.55 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...+.++.++.+++.|||+.-
T Consensus 232 ~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~ 262 (333)
T cd05600 232 EAWDLITKLINDPSRRFGSLEDIKNHPFFKE 262 (333)
T ss_pred HHHHHHHHHhhChhhhcCCHHHHHhCcccCC
Confidence 5778999999988889989889999999873
No 206
>PLN00009 cyclin-dependent kinase A; Provisional
Probab=63.12 E-value=2.3 Score=34.01 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|+++.+++.|||+.-
T Consensus 259 ~~~~~i~~~l~~~P~~Rps~~~~l~~~~~~~ 289 (294)
T PLN00009 259 AGVDLLSKMLRLDPSKRITARAALEHEYFKD 289 (294)
T ss_pred HHHHHHHHHccCChhhCcCHHHHhcCchHhH
Confidence 4568999999999999999999999999874
No 207
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=62.98 E-value=70 Score=24.83 Aligned_cols=15 Identities=7% Similarity=-0.046 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCCCCC
Q 027506 110 DEVEMVMRKLTLFCS 124 (222)
Q Consensus 110 ~el~~~l~~~~~~~~ 124 (222)
.+|...+..+|.++.
T Consensus 61 ~~f~~~~~~lGvdp~ 75 (223)
T PF04157_consen 61 SQFQSMCASLGVDPL 75 (223)
T ss_dssp HHHHHHHHHHT--CH
T ss_pred HHHHHHHHHcCCCcc
Confidence 588888888998764
No 208
>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re
Probab=62.82 E-value=2.9 Score=32.43 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHhccc---cccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSS---AKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~---~~al~hpw~~ 57 (222)
...++|++++...|..|+++ .++++|||+.
T Consensus 229 ~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~~~~~ 261 (265)
T cd05579 229 EAIDLISKLLVPDPEKRLGAKSIEEIKNHPFFK 261 (265)
T ss_pred HHHHHHHHHhcCCHhhcCCCccHHHHhcCcccc
Confidence 56789999999999999999 7999999985
No 209
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=62.51 E-value=2.2 Score=34.93 Aligned_cols=31 Identities=10% Similarity=0.060 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|.++.+++.|||+..
T Consensus 288 ~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~ 318 (335)
T PTZ00024 288 DAIDLLQSLLKLNPLERISAKEALKHEYFKS 318 (335)
T ss_pred HHHHHHHHHcCCCchhccCHHHHhcCcccCC
Confidence 4568899999999999999999999999973
No 210
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=62.34 E-value=2.4 Score=35.14 Aligned_cols=31 Identities=19% Similarity=0.079 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|+.++...+.+|.++.+++.|||+..
T Consensus 303 ~l~~li~~~l~~~P~~Rpt~~ell~hp~~~~ 333 (353)
T PLN00034 303 EFRHFISCCLQREPAKRWSAMQLLQHPFILR 333 (353)
T ss_pred HHHHHHHHHccCChhhCcCHHHHhcCccccc
Confidence 4678899999999999999999999999875
No 211
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=62.16 E-value=3.6 Score=34.26 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
.+..+++.+++...|++|.++.+++.||+++.
T Consensus 280 ~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFde 311 (364)
T KOG0658|consen 280 PDALDLLSKLLQYSPSKRLSALEALAHPFFDE 311 (364)
T ss_pred HHHHHHHHHHhccChhhcCCHHHHhcchhhHH
Confidence 46889999999999999999999999999985
No 212
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=62.15 E-value=35 Score=21.15 Aligned_cols=45 Identities=9% Similarity=0.223 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 027506 169 DAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFM 215 (222)
Q Consensus 169 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l 215 (222)
+.+++..++...|.+ ++..++..+++.-+..+--..+-..+..++
T Consensus 15 ~d~~m~~if~l~~~~--vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 15 KDDDMIEIFALAGFE--VSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred ChHHHHHHHHHcCCc--cCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 335677777777766 777778877777554433334444444433
No 213
>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity
Probab=62.08 E-value=2 Score=33.60 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...++|..++...|..|+++.+++.|||+.
T Consensus 232 ~~~~li~~~l~~~p~~Rpt~~~ll~~~~~~ 261 (265)
T cd06605 232 DFQDFVNLCLIKDPRERPSYKELLEHPFIK 261 (265)
T ss_pred HHHHHHHHHcCCCchhCcCHHHHhhCchhh
Confidence 356788888888899999999999999986
No 214
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=62.05 E-value=23 Score=31.63 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=51.5
Q ss_pred cCccHH--HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcC
Q 027506 86 RNWDEK--SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDE 162 (222)
Q Consensus 86 ~~~~~~--~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~ 162 (222)
.+.+.+ ..+..|..+| ++.|.++.+++..+|...+..-+ .+.+.+.-+..|.
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d-------------------------~~~~~~~l~ea~~ 640 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWD-------------------------EDRLHEELQEADE 640 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCC-------------------------HHHHHHHHHHHHH
Confidence 344444 5567799999 89999999999999988764444 3345555666666
Q ss_pred CCCCcccHHHHHHHHHHh
Q 027506 163 NKDGFIDAMELQRLLCIL 180 (222)
Q Consensus 163 d~~G~I~~~el~~~l~~~ 180 (222)
+-+|.+...|+.+++...
T Consensus 641 ~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 641 NLNGFVELREFLQLMSAI 658 (680)
T ss_pred hhcceeeHHHHHHHHHHH
Confidence 668888888888877654
No 215
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=61.91 E-value=45 Score=22.30 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCC
Q 027506 106 SLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEG 185 (222)
Q Consensus 106 ~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~ 185 (222)
.++..+++.+.+.+|+..+. ++++.... .....++..++++.+=......=+...|.++|+.++..
T Consensus 17 ~~~~~~wK~faR~lglse~~-Id~I~~~~-----------~~d~~Eq~~qmL~~W~~~~G~~a~~~~Li~aLr~~~l~-- 82 (97)
T cd08316 17 VMTLKDVKKFVRKSGLSEPK-IDEIKLDN-----------PQDTAEQKVQLLRAWYQSHGKTGAYRTLIKTLRKAKLC-- 82 (97)
T ss_pred HcCHHHHHHHHHHcCCCHHH-HHHHHHcC-----------CCChHHHHHHHHHHHHHHhCCCchHHHHHHHHHHccch--
Confidence 36778888888999876542 44443221 11223445555555533333333468888999998876
Q ss_pred CCHHHHHHHHH
Q 027506 186 FELENCKKMIK 196 (222)
Q Consensus 186 ~~~~~~~~~~~ 196 (222)
...+.+..++.
T Consensus 83 ~~Ad~I~~~l~ 93 (97)
T cd08316 83 TKADKIQDIIE 93 (97)
T ss_pred hHHHHHHHHHH
Confidence 55666766655
No 216
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=61.79 E-value=3.2 Score=33.03 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~ 57 (222)
...++|..++...|..|. ++.++++|||+.
T Consensus 227 ~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h~~~~ 261 (280)
T cd05608 227 ASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFR 261 (280)
T ss_pred HHHHHHHHHhcCCHHHhcCCCCCCHHHHhcChhhh
Confidence 467899999999999998 556899999996
No 217
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=61.31 E-value=15 Score=22.39 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=28.8
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhCCC---------CCCCHHHHHHHHHHhCC
Q 027506 158 DVFDENKDGFIDAMELQRLLCILGLK---------EGFELENCKKMIKTFDK 200 (222)
Q Consensus 158 ~~~D~d~~G~I~~~el~~~l~~~~~~---------~~~~~~~~~~~~~~~d~ 200 (222)
+.||...+.+||.+++.+++.. |.. ..++...+-+++-+...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~-g~~~~V~D~ktgeDiT~~iL~QIi~e~e~ 60 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE-GEDFKVVDAKTGEDITRSILLQIILEEES 60 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC-CCeEEEEECCCCcccHHHHHHHHHHHHHh
Confidence 4689999999999999999874 211 12555556666655443
No 218
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=61.21 E-value=36 Score=23.45 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 027506 153 VKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVK 213 (222)
Q Consensus 153 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~ 213 (222)
.-.+|-..-..|+..+|.+++.++|...|.. +....+..+++.+. | .+.+|.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGve--Vd~~~~~l~~~~L~----G-KdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNAD--VEDDVLDNFFKSLE----G-KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC--ccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 3456666777788889999999999999977 77888888888873 2 45566554
No 219
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=60.91 E-value=2.9 Score=34.50 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|.+|+++.+++.|||+..
T Consensus 273 ~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~ 303 (343)
T cd07880 273 LAVNVLEKMLVLDAESRITAAEALAHPYFEE 303 (343)
T ss_pred HHHHHHHHHcCCChhhCCCHHHHhcCccHhh
Confidence 4678999999999999999999999999985
No 220
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=60.69 E-value=3.2 Score=33.79 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHHHhccc-----cccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSS-----AKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~-----~~al~hpw~~~ 58 (222)
...++|++++...|.+|.++ .+++.|||+..
T Consensus 222 ~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~ 257 (318)
T cd05570 222 EAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFRE 257 (318)
T ss_pred HHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCC
Confidence 57789999999999999999 89999999964
No 221
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=60.57 E-value=3.4 Score=32.80 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|..|+++.+++.|||+..
T Consensus 228 ~~~~li~~~l~~~P~~Rp~~~eil~~~~~~~ 258 (279)
T cd06619 228 KFVHFITQCMRKQPKERPAPENLMDHPFIVQ 258 (279)
T ss_pred HHHHHHHHHhhCChhhCCCHHHHhcCccccc
Confidence 4668999999999999999999999999974
No 222
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=60.45 E-value=3.1 Score=34.01 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~ 57 (222)
...++|+.++...|.+|. ++.++++|||+.
T Consensus 221 ~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~ 255 (323)
T cd05571 221 EAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFA 255 (323)
T ss_pred HHHHHHHHHccCCHHHcCCCCCCCHHHHHcCCCcC
Confidence 577899999999999998 577999999986
No 223
>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates
Probab=59.86 E-value=3 Score=33.15 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|..|+++.+++.|||+..
T Consensus 242 ~l~~li~~~l~~~p~~Rpt~~~i~~~~~~~~ 272 (288)
T cd06616 242 SFVNFINLCLIKDESKRPKYKELLEHPFIKD 272 (288)
T ss_pred HHHHHHHHHccCChhhCcCHHHHhcChhhhc
Confidence 4578999999999999999999999999964
No 224
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=59.65 E-value=15 Score=25.96 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=42.8
Q ss_pred HHHHHHHhhhcc-CC--CCcccHHHHHHHHHHcC----CC-CC-cchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHh
Q 027506 90 EKSKQASFNKKE-HD--DESLSRDEVEMVMRKLT----LF-CS-FEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVF 160 (222)
Q Consensus 90 ~~~l~~~F~~~D-~~--~G~i~~~el~~~l~~~~----~~-~~-~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~ 160 (222)
...+.++|.... +. +..|+..++..++..+- .. +. ..+.. .. .+.-. .--+......|
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~--~~--v~~a~---------~L~ln~Ll~vy 106 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPS--RP--VDLAV---------DLLLNWLLNVY 106 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH---------HHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCc--hh--HHHHH---------HHHHHHHHHHh
Confidence 335567787766 42 56788888888776541 00 00 00000 00 00000 12456789999
Q ss_pred cCCCCCcccHHHHHHHHHHh
Q 027506 161 DENKDGFIDAMELQRLLCIL 180 (222)
Q Consensus 161 D~d~~G~I~~~el~~~l~~~ 180 (222)
|++++|.|+.-.++.++..+
T Consensus 107 D~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 107 DSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp -TT--SEEEHHHHHHHHHHT
T ss_pred CCCCCCeeehhHHHHHHHHh
Confidence 99999999999999888653
No 225
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=59.57 E-value=2.9 Score=32.63 Aligned_cols=30 Identities=7% Similarity=0.151 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHHHhcc-----ccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKS-----SAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~-----~~~al~hpw~~ 57 (222)
...++|.+++...|..|.+ +.+.++|||+.
T Consensus 222 ~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~~~~~~ 256 (262)
T cd05572 222 AAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFN 256 (262)
T ss_pred HHHHHHHHHccCChhhCcCCcccCHHHHhcChhhh
Confidence 5677888999888999988 66999999985
No 226
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=59.50 E-value=2.1 Score=35.16 Aligned_cols=31 Identities=16% Similarity=0.027 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|+++.+++.|||+..
T Consensus 274 ~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~ 304 (333)
T cd06650 274 EFQDFVNKCLIKNPAERADLKQLMVHAFIKR 304 (333)
T ss_pred HHHHHHHHhccCCcccCcCHHHHhhCHHHhc
Confidence 3468999999999999999999999999973
No 227
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=58.84 E-value=4.3 Score=32.23 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHHhccc----cccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSS----AKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~----~~al~hpw~~ 57 (222)
...++|..++...|.+|.++ .+.+.|||+.
T Consensus 225 ~~~~li~~~L~~~P~~R~~~~~~~~~~~~h~~f~ 258 (277)
T cd05607 225 ESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFK 258 (277)
T ss_pred HHHHHHHHHhccCHhhCCCCccchhhhhcChhhc
Confidence 57889999999999999999 4677999996
No 228
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=58.76 E-value=4 Score=33.30 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHhccc------cccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSS------AKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~------~~al~hpw~~ 57 (222)
...++|+.++...|.+|.++ .+++.|||+.
T Consensus 222 ~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~ 257 (320)
T cd05590 222 DAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFK 257 (320)
T ss_pred HHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcC
Confidence 46789999999999999988 5789999986
No 229
>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi
Probab=58.18 E-value=3.8 Score=32.59 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~ 57 (222)
...++|++++...|.+|. ++.++++|||+.
T Consensus 225 ~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h~~~~ 259 (279)
T cd05633 225 ELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFK 259 (279)
T ss_pred HHHHHHHHHhcCCHHHhcCCCCCCHHHHHhCcccc
Confidence 567899999999999998 477999999986
No 230
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=58.17 E-value=3.5 Score=33.74 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|. ++.++++|||+.-
T Consensus 237 ~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~ 272 (332)
T cd05614 237 EAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKG 272 (332)
T ss_pred HHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCC
Confidence 467899999999999998 4558999999863
No 231
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=57.70 E-value=4.9 Score=32.92 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHhccc-----cccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSS-----AKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~-----~~al~hpw~~~ 58 (222)
...++|+.++...|.+|.++ .++++|||+.-
T Consensus 241 ~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~ 276 (329)
T PTZ00263 241 RARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHG 276 (329)
T ss_pred HHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCC
Confidence 46789999999999999874 58999999863
No 232
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=57.56 E-value=2.6 Score=38.90 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFN 56 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~ 56 (222)
.+.++|.+++...|.+|++|.++|.||.+
T Consensus 742 eA~dLI~~ml~~dP~~RPsa~~VL~HPlF 770 (903)
T KOG1027|consen 742 EAKDLISRMLNPDPQLRPSATDVLNHPLF 770 (903)
T ss_pred HHHHHHHHhcCCCcccCCCHHHHhCCCcc
Confidence 68899999999999999999999999976
No 233
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=57.22 E-value=4.9 Score=32.81 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~ 57 (222)
...++|+.++...|.+|. ++.+++.|||+.
T Consensus 222 ~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~ 256 (325)
T cd05594 222 EAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFA 256 (325)
T ss_pred HHHHHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcC
Confidence 577899999999999997 667999999987
No 234
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=57.19 E-value=3.8 Score=32.94 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|.+++...|..|+++.+++.|||+..
T Consensus 245 ~~~li~~~l~~~p~~Rps~~~il~~~~~~~ 274 (297)
T cd06656 245 FRDFLNRCLEMDVDRRGSAKELLQHPFLKL 274 (297)
T ss_pred HHHHHHHHccCChhhCcCHHHHhcCchhcc
Confidence 457888888889999999999999999973
No 235
>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase. Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=56.88 E-value=3.3 Score=32.86 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|++++...|..|+++.+++.|||+..
T Consensus 237 ~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~ 267 (282)
T cd06643 237 EFKDFLKKCLEKNVDARWTTTQLLQHPFVTV 267 (282)
T ss_pred HHHHHHHHHccCChhhCcCHHHHhcCCCEec
Confidence 5778999999999999999999999999874
No 236
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=56.46 E-value=4.3 Score=32.63 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|++++...|..|+++.+++.|||+..
T Consensus 244 ~~~~li~~~l~~dp~~Rpt~~~il~~~~~~~ 274 (296)
T cd06655 244 IFRDFLNRCLEMDVEKRGSAKELLQHPFLKL 274 (296)
T ss_pred HHHHHHHHHhhcChhhCCCHHHHhhChHhhh
Confidence 4667899999999999999999999999974
No 237
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=56.02 E-value=3.5 Score=34.03 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...+.+|.++.+++.|||+..
T Consensus 275 ~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~ 305 (345)
T cd07877 275 LAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 305 (345)
T ss_pred HHHHHHHHHcCCChhhcCCHHHHhcChhhhh
Confidence 4678999999999999999999999999873
No 238
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=55.46 E-value=14 Score=32.91 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCC
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFC 123 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~ 123 (222)
-+..+|.++| ++||-++.+|+..++...+-.+
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p 348 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP 348 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC
Confidence 7789999999 9999999999999999876544
No 239
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.21 E-value=38 Score=31.01 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh---CC---CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCIL---GL---KEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~---~~---~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
+.+++..|...|. ++|.++.+++..++... +. ....+.+....++.+.|.+..|.+.+.++..++...
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQI 90 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhc
Confidence 4578899999998 99999999999888743 11 011344566678888899888888888877776543
No 240
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=55.10 E-value=5 Score=32.85 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHhcc------ccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKS------SAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~------~~~al~hpw~~ 57 (222)
...++|++++...|.+|.+ ..++++|||+.
T Consensus 231 ~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~ 266 (329)
T cd05588 231 KASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFR 266 (329)
T ss_pred HHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCC
Confidence 4678999999999999986 34899999996
No 241
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=54.92 E-value=4.1 Score=33.53 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
.+.++|.+++...|..|.+|.+.|.|||...
T Consensus 251 ~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~ 281 (313)
T KOG0198|consen 251 EAKDFLRKCFKRDPEKRPTAEELLEHPFLKQ 281 (313)
T ss_pred HHHHHHHHHhhcCcccCcCHHHHhhChhhhc
Confidence 5888999999999999999999999999875
No 242
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=54.70 E-value=4.5 Score=33.44 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~ 57 (222)
...++|++++...|.+|. ++.++++|||+.
T Consensus 254 ~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~ 288 (340)
T PTZ00426 254 NCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFG 288 (340)
T ss_pred HHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcC
Confidence 577899999999999996 566899999986
No 243
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.30 E-value=24 Score=25.37 Aligned_cols=63 Identities=22% Similarity=0.367 Sum_probs=41.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 155 EAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 155 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
..|+..+. +|.++..|......-+...-+++.+++..++.....-+.-.|+|-.|...|++.+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L 96 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL 96 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 57888754 5667766654433322222237778888888776555556788888988888654
No 244
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=53.68 E-value=56 Score=22.38 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 154 KEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 154 ~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
-.+|-..-..|+..+|.+++..+|...|.. +....+..+++.+. | .+.++.+.--..
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGve--Ve~~~~~lf~~~L~----G-Kdi~eLIa~g~~ 60 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVE--VDDEKLNKVISELE----G-KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCC--ccHHHHHHHHHHHc----C-CCHHHHHHHhHh
Confidence 346666667788899999999999999976 77777888888773 2 456666655444
No 245
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=53.66 E-value=4.7 Score=31.44 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHHHHHHhccc---cccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSS---AKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~---~~al~hpw~~ 57 (222)
....++|.+++...|..|.++ .++++|||+.
T Consensus 222 ~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~~~~~ 255 (260)
T cd05611 222 PEAVDLINRLLCMDPAKRLGANGYQEIKSHPFFK 255 (260)
T ss_pred HHHHHHHHHHccCCHHHccCCCcHHHHHcChHhh
Confidence 357889999999999999976 4899999985
No 246
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=52.26 E-value=5.1 Score=32.81 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~ 57 (222)
...++|++++...|.+|. ++.++++|||+.
T Consensus 221 ~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~ 255 (328)
T cd05593 221 DAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFT 255 (328)
T ss_pred HHHHHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcC
Confidence 577899999999999997 666999999986
No 247
>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)
Probab=52.20 E-value=5.2 Score=31.51 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|..|+++.++++|||+.-
T Consensus 226 ~~~~~l~~~l~~~p~~Rpt~~~il~~~~~~~ 256 (274)
T cd06609 226 PFKDFVSLCLNKDPKERPSAKELLKHKFIKK 256 (274)
T ss_pred HHHHHHHHHhhCChhhCcCHHHHhhChhhcC
Confidence 4678889999999999999999999999973
No 248
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=51.92 E-value=4.5 Score=30.74 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=38.3
Q ss_pred hhhcc--CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHH
Q 027506 97 FNKKE--HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQ 174 (222)
Q Consensus 97 F~~~D--~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~ 174 (222)
|..+| .-||++|..||.-+-. .+ .+-+.-....|.-.|.|++|+|+.+|..
T Consensus 193 f~qld~~p~d~~~sh~el~pl~a--p~-------------------------ipme~c~~~f~e~cd~~nd~~ial~ew~ 245 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRA--PL-------------------------IPMEHCTTRFFETCDLDNDKYIALDEWA 245 (259)
T ss_pred eccccCCCccccccccccccccC--Cc-------------------------ccHHhhchhhhhcccCCCCCceeHHHhh
Confidence 66788 5799999988753211 00 1112345678999999999999999997
Q ss_pred HHH
Q 027506 175 RLL 177 (222)
Q Consensus 175 ~~l 177 (222)
..+
T Consensus 246 ~c~ 248 (259)
T KOG4004|consen 246 GCF 248 (259)
T ss_pred ccc
Confidence 765
No 249
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=51.75 E-value=4.4 Score=32.87 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHHhcc---ccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKS---SAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~---~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|.+ +.++++|||+..
T Consensus 219 ~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~~~~ 252 (312)
T cd05585 219 DAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQ 252 (312)
T ss_pred HHHHHHHHHcCCCHHHcCCCCCHHHHHcCCCcCC
Confidence 5778999999999999974 458999999874
No 250
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=51.60 E-value=6.2 Score=32.21 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...++|+.++. .+.+|.++.+++.|||+.
T Consensus 239 ~~~~li~~ll~-~p~~R~t~~~l~~h~~~~ 267 (330)
T cd05601 239 DFLDLIQSLLC-GQKERLGYEGLCCHPFFS 267 (330)
T ss_pred HHHHHHHHHcc-ChhhCCCHHHHhCCCCcC
Confidence 46788999987 899999999999999986
No 251
>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=51.56 E-value=3.3 Score=33.02 Aligned_cols=29 Identities=7% Similarity=0.131 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
..++|..++...|.+|+++.+++.|||+.
T Consensus 242 ~~~li~~~l~~~p~~Rpt~~eil~~~~~~ 270 (287)
T cd06621 242 FKDFIKQCLEKDPTRRPTPWDMLEHPWIK 270 (287)
T ss_pred HHHHHHHHcCCCcccCCCHHHHHhCcccc
Confidence 45788888888899999999999999985
No 252
>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6. Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs
Probab=51.45 E-value=5 Score=31.66 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|..|+++.+++.|||+..
T Consensus 236 ~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~ 266 (283)
T cd06617 236 EFQDFVNKCLKKNYKERPNYPELLQHPFFEL 266 (283)
T ss_pred HHHHHHHHHccCChhhCcCHHHHhcCchhhh
Confidence 3567899999999999999999999999985
No 253
>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I
Probab=51.04 E-value=7 Score=31.81 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHHhcccc-ccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSA-KKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~-~al~hpw~~~ 58 (222)
...++|++++...|.+|.++. ++++|||+..
T Consensus 222 ~~~~li~~~l~~dP~~R~~~~~~~~~h~~f~~ 253 (316)
T cd05620 222 ESKDILEKLFERDPTRRLGVVGNIRGHPFFKT 253 (316)
T ss_pred HHHHHHHHHccCCHHHcCCChHHHHcCCCcCC
Confidence 577899999999999999886 7889999863
No 254
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=50.89 E-value=5 Score=32.54 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhHHH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQFSA 60 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~~~ 60 (222)
..++|.+++...|..|+++.+++.|||+....
T Consensus 249 l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~~~ 280 (313)
T cd06633 249 FRGFVDYCLQKIPQERPASAELLRHDFVRRDR 280 (313)
T ss_pred HHHHHHHHccCChhhCcCHHHHhcCcccCCCc
Confidence 56788999999999999999999999998433
No 255
>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co
Probab=50.60 E-value=3.8 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|..|+++.+++.|||+..
T Consensus 267 ~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~ 297 (332)
T cd07857 267 LALDLLEKLLAFDPTKRISVEEALEHPYLAI 297 (332)
T ss_pred HHHHHHHHHccCCcccCCCHHHHhcChhhhh
Confidence 5778999999999999999999999999853
No 256
>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of
Probab=50.51 E-value=4.7 Score=31.88 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~ 57 (222)
...++|++++...|..|+ ++.+++.|||+.
T Consensus 224 ~~~~li~~~l~~~p~~R~~~~~~~~~~ll~h~~~~ 258 (277)
T cd05577 224 EAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFK 258 (277)
T ss_pred HHHHHHHHHccCChhHccCCCcccHHHHHhChhhh
Confidence 467899999999999999 666799999995
No 257
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=50.29 E-value=44 Score=20.51 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=28.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Q 027506 164 KDGFIDAMELQRLLCILGLKEGFELENCKKMIKTF 198 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (222)
.+-.|+.+-++.++..+|.+ .|+..+.+++..+
T Consensus 28 ~NPpine~mir~M~~QMG~k--pSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRK--PSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHH
Confidence 36689999999999999987 7889999988765
No 258
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=50.21 E-value=17 Score=23.35 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=21.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC
Q 027506 164 KDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDK 200 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~ 200 (222)
..|+||.+++..+|.... ++.+.+..++..+..
T Consensus 18 ~~G~lT~~eI~~~L~~~~----~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD----LDPEQIDEIYDTLED 50 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-------HHHHHHHHHHHHT
T ss_pred hcCcCCHHHHHHHcCccC----CCHHHHHHHHHHHHH
Confidence 478999999999987443 667888888887743
No 259
>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,
Probab=50.01 E-value=5.8 Score=31.59 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~~ 58 (222)
...++|.+++...|..|. ++.+++.|||+..
T Consensus 231 ~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~ 266 (285)
T cd05605 231 AARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRT 266 (285)
T ss_pred HHHHHHHHHccCCHHHhcCCCCCCHHHHhcCcCccC
Confidence 467899999999999999 6779999999973
No 260
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=49.84 E-value=6.6 Score=31.95 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHHHHHHhc-------cccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLK-------SSAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~-------~~~~al~hpw~~ 57 (222)
....++|+.++...|..|. ++.++++|||+.
T Consensus 221 ~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~ 258 (321)
T cd05591 221 KEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFK 258 (321)
T ss_pred HHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccC
Confidence 3567899999999999998 666899999985
No 261
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=49.58 E-value=7.2 Score=31.97 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHhccc------cccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSS------AKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~------~~al~hpw~~ 57 (222)
...++|+.++...|.+|.++ .++++|||+.
T Consensus 231 ~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~ 266 (329)
T cd05618 231 KAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFR 266 (329)
T ss_pred HHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCC
Confidence 46789999999999999875 4899999986
No 262
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=49.43 E-value=72 Score=20.81 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=21.4
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC
Q 027506 167 FIDAMELQRLLCILGLKEGFELENCKKMIKTFDK 200 (222)
Q Consensus 167 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~ 200 (222)
.||..||.+..+.+|.+ ++....+.++..+-.
T Consensus 14 ~iT~~eLlkyskqy~i~--it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 14 NITAKELLKYSKQYNIS--ITKKQAEQIANILRG 45 (85)
T ss_pred cCCHHHHHHHHHHhCCC--CCHHHHHHHHHHHhc
Confidence 56777777777777766 677666666666543
No 263
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=49.34 E-value=6.2 Score=33.04 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHHHH--hccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKK--LKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~--~~~~~~al~hpw~~ 57 (222)
...++|+.++...+.+ |.++.++++|||+.
T Consensus 277 ~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~ 308 (370)
T cd05596 277 QAKDLICAFLTDREVRLGRNGVDEIKSHPFFK 308 (370)
T ss_pred HHHHHHHHHccChhhccCCCCHHHHhcCcccC
Confidence 5678899999877877 66777999999986
No 264
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=49.25 E-value=5.6 Score=32.49 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHhcc----ccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKS----SAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~----~~~al~hpw~~ 57 (222)
...++|++++...|.+|.+ +.+++.|||+.
T Consensus 224 ~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~ 257 (330)
T cd05586 224 EGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFA 257 (330)
T ss_pred HHHHHHHHHcCCCHHHCCCCCCCHHHHhcCcccc
Confidence 5778999999999999974 45899999986
No 265
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=49.22 E-value=6.8 Score=32.17 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHHHHHHhcc-ccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKS-SAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~-~~~al~hpw~~ 57 (222)
....++|..++. .+..|.+ +.+++.|||+.
T Consensus 259 ~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~ 289 (350)
T cd05573 259 PEAIDLICRLLC-DPEDRLGSFEEIKSHPFFK 289 (350)
T ss_pred HHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcC
Confidence 356789999986 7999988 88999999986
No 266
>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co
Probab=48.68 E-value=7.4 Score=30.87 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHHHHHHhc-----cccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~~ 58 (222)
....++|.+++...+.+|. ++.++++|||+.-
T Consensus 224 ~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~ 260 (278)
T cd05606 224 PELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRS 260 (278)
T ss_pred HHHHHHHHHHhhcCHHhccCCCCCCHHHHHhCccccC
Confidence 3577899999999999998 7779999999963
No 267
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=48.24 E-value=4.9 Score=31.24 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...++|..++...+..|+++.+++.|||+.
T Consensus 231 ~l~~li~~~l~~~p~~R~~~~~ll~~~~~~ 260 (264)
T cd06623 231 EFRDFISACLQKDPKKRPSAAELLQHPFIK 260 (264)
T ss_pred HHHHHHHHHccCChhhCCCHHHHHhCHHHH
Confidence 466788888888899999999999999985
No 268
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=47.96 E-value=73 Score=22.86 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=22.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC
Q 027506 165 DGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDK 200 (222)
Q Consensus 165 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~ 200 (222)
.+.|+.+.|+..|+.+=... ++++-+..+|..|-.
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d-~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVD-LPEDLCQHLFLSFQK 80 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S---HHHHHHHHHHS--
T ss_pred CCCcCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHhC
Confidence 55899999999998763222 788888888888743
No 269
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=47.92 E-value=6.2 Score=31.65 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|.+|.++.+++.|||+..
T Consensus 245 ~l~~li~~~l~~~P~~R~~~~~ll~~~~~~~ 275 (292)
T cd06657 245 SLKGFLDRLLVRDPAQRATAAELLKHPFLAK 275 (292)
T ss_pred HHHHHHHHHHhCCcccCcCHHHHhcChHHhc
Confidence 4567888888888999999999999999874
No 270
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=47.58 E-value=6.9 Score=31.96 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~~ 58 (222)
...++|+.++...|..|. ++.+++.|||+.-
T Consensus 221 ~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~ 256 (323)
T cd05595 221 EAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLS 256 (323)
T ss_pred HHHHHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCC
Confidence 567899999999999997 6669999999873
No 271
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=47.22 E-value=6.1 Score=31.59 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|..|+++.+++.|||+..
T Consensus 248 ~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~ 278 (296)
T cd06618 248 DFCSFVDLCLTKDHRKRPKYRELLQHPFIRR 278 (296)
T ss_pred HHHHHHHHHccCChhhCCCHHHHhcChhhhc
Confidence 4578999999999999999999999999874
No 272
>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in
Probab=47.00 E-value=8.3 Score=31.39 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHhcccc-ccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSA-KKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~-~al~hpw~~~ 58 (222)
...++|.+++...|.+|.++. +++.|||+..
T Consensus 222 ~~~~li~~~l~~~P~~R~~~~~~l~~h~~~~~ 253 (316)
T cd05619 222 EAKDILVKLFVREPERRLGVKGDIRQHPFFRE 253 (316)
T ss_pred HHHHHHHHHhccCHhhcCCChHHHHcCcccCC
Confidence 577899999999999999887 8899999874
No 273
>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in
Probab=46.93 E-value=7.2 Score=31.82 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=27.3
Q ss_pred CcHHHHHHHHHHHHHHHhc-----cccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~~ 58 (222)
....++|++++...|.+|. .+.++++|||+..
T Consensus 225 ~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~ 261 (323)
T cd05584 225 PEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRH 261 (323)
T ss_pred HHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCC
Confidence 3577899999999999998 5668999999864
No 274
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=46.78 E-value=30 Score=21.23 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=31.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC
Q 027506 164 KDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNG 202 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 202 (222)
.++.++...+.+.|...|.. ++++.+...+..++.+|
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~--~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEE--LSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChh--hhHHHHHHHHHHHHHCC
Confidence 56789999999999888876 88899999999988764
No 275
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=46.69 E-value=26 Score=25.94 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=34.5
Q ss_pred HhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Q 027506 143 FEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTF 198 (222)
Q Consensus 143 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (222)
+..+..+..++..|++++-.++...|+..+|.+.+ |....+|+++++..+..+
T Consensus 77 ~~gklkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c---GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 77 VDGKLKTNLQLDAALKYLKSNPSEPIDVAEFEKAC---GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HTTS--SHHHHHHHHHHHHHHGG-G--HHHHHHTT---TTT----HHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHc---CCCeEECHHHHHHHHHHH
Confidence 34456677899999999977777789999999877 443448999998877765
No 276
>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=46.64 E-value=5.2 Score=31.73 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|.+|+++.+++.|||+..
T Consensus 237 ~~~~li~~~l~~~p~~Rp~~~~l~~~~~~~~ 267 (286)
T cd06622 237 DAQDFVAKCLNKIPNRRPTYAQLLEHPWLVK 267 (286)
T ss_pred HHHHHHHHHcccCcccCCCHHHHhcChhhhh
Confidence 4668889999889999999999999999863
No 277
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=12 Score=35.27 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 152 EVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 152 ~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
.....|+..|..++|.|+..+-...+...| +....+-++....|..+.|.++..+|...++..
T Consensus 12 ~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~----L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlv 74 (847)
T KOG0998|consen 12 LFDQYFKSADPQGDGRITGAEAVAFLSKSG----LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLV 74 (847)
T ss_pred hHHHhhhccCcccCCcccHHHhhhhhhccc----cchhhhhccccccccccCCccccccccccchHh
Confidence 466789999999999999999999988777 455667778888898888999999998887654
No 278
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=46.13 E-value=11 Score=30.69 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHHHHHHHhcccc----ccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSA----KKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~----~al~hpw~~ 57 (222)
....++|++++...|.+|.++. ++++|||+.
T Consensus 221 ~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~ 255 (323)
T cd05575 221 VSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFS 255 (323)
T ss_pred HHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcC
Confidence 3577899999999999999884 889999986
No 279
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=46.08 E-value=5.5 Score=31.77 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...++|++++...|..|+++.++++|||+.
T Consensus 244 ~~~~li~~~l~~~p~~Rp~~~~il~~~~~~ 273 (292)
T cd06644 244 EFRDFLKTALDKHPETRPSAAQLLEHPFVS 273 (292)
T ss_pred HHHHHHHHHhcCCcccCcCHHHHhcCcccc
Confidence 467788999998999999999999999986
No 280
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=45.70 E-value=6.2 Score=32.34 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...++|++++...|.+|.++.+++.|||+.
T Consensus 263 ~~~~li~~~l~~~P~~R~t~~ell~~~~~~ 292 (328)
T cd07856 263 SAIDLLEKMLVFDPQKRISAAEALAHPYLA 292 (328)
T ss_pred HHHHHHHHHcCCChhhCCCHHHHhcCCccc
Confidence 467899999999999999999999999985
No 281
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=45.49 E-value=53 Score=18.31 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=20.4
Q ss_pred HHHHHHHHhc--CCCCCcccHHHHHHHHHH
Q 027506 152 EVKEAFDVFD--ENKDGFIDAMELQRLLCI 179 (222)
Q Consensus 152 ~l~~~F~~~D--~d~~G~I~~~el~~~l~~ 179 (222)
.+..+|..|- ......++..||+.++..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4666777774 244678999999998875
No 282
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=45.28 E-value=4.8 Score=28.51 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=5.9
Q ss_pred CCcccHHHHHHHHH
Q 027506 165 DGFIDAMELQRLLC 178 (222)
Q Consensus 165 ~G~I~~~el~~~l~ 178 (222)
||.|+.+|...+..
T Consensus 37 DG~v~~~E~~~i~~ 50 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQ 50 (140)
T ss_dssp TSS--CHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 45555555544443
No 283
>PRK00523 hypothetical protein; Provisional
Probab=45.24 E-value=55 Score=20.55 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Q 027506 155 EAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTF 198 (222)
Q Consensus 155 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (222)
..|+.+ ...+-.|+.+-++.++.++|.+ .|+..+++++..+
T Consensus 28 k~~~k~-l~~NPpine~mir~M~~QMGqK--PSekki~Q~m~~m 68 (72)
T PRK00523 28 KMFKKQ-IRENPPITENMIRAMYMQMGRK--PSESQIKQVMRSV 68 (72)
T ss_pred HHHHHH-HHHCcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHH
Confidence 344444 2346789999999999999987 6889999998876
No 284
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=45.19 E-value=25 Score=18.24 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=11.6
Q ss_pred CCceeHHHHHHHHHhh
Q 027506 203 DGRIDFKEFVKFMEKS 218 (222)
Q Consensus 203 dg~I~~~eF~~~l~~~ 218 (222)
.|.|++++++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4678888888777653
No 285
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=45.05 E-value=14 Score=31.66 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhcCcccccCCCCcHHHHHHHHHHHHHHHhcc----ccccCCCChhh
Q 027506 6 QKWRAALTEASNLSGWDSMTIRSEAQLVNKIVGDVLKKLKS----SAKKNQHPFNQ 57 (222)
Q Consensus 6 ~~w~~~l~~~~~~~G~~~~~~~~~~~~i~~il~~~~~~~~~----~~~al~hpw~~ 57 (222)
+..+.++.+-....+....+ ..+.++|+++|...|++|.- |+++=.||++.
T Consensus 342 ~Tl~NIv~~~l~Fp~~~~vs-~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~ 396 (459)
T KOG0610|consen 342 ETLRNIVGQPLKFPEEPEVS-SAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFE 396 (459)
T ss_pred hhHHHHhcCCCcCCCCCcch-hHHHHHHHHHhccChhhhhccccchHHhhcCcccc
Confidence 45556666666666666444 46899999999999999977 55777899886
No 286
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=44.56 E-value=6.7 Score=31.44 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|..++...|..|+++.+++.|||+..
T Consensus 248 ~~~li~~~l~~~P~~Rpt~~~il~~~~~~~ 277 (292)
T cd06658 248 LRGFLDLMLVREPSQRATAQELLQHPFLKL 277 (292)
T ss_pred HHHHHHHHccCChhHCcCHHHHhhChhhhc
Confidence 456777777788999999999999999984
No 287
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=44.54 E-value=4.2 Score=32.12 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...++|..++...|..|+++.+++.|||+.
T Consensus 228 ~~~~li~~~l~~~p~~Rp~~~~il~~~~~~ 257 (277)
T cd06642 228 PFKEFVEACLNKDPRFRPTAKELLKHKFIT 257 (277)
T ss_pred HHHHHHHHHccCCcccCcCHHHHHHhHHHH
Confidence 356788888888899999999999999986
No 288
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.42 E-value=19 Score=36.44 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHH-HHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 147 EPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELEN-CKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 147 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~-~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
..+.+...++++.||++.+|.|...++..+++.+..|..+.... -+-+--.+....+|.|++.+=+.++.+..
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 34567889999999999999999999999999875432211100 01122223455788899988887777643
No 289
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=44.07 E-value=6.3 Score=31.14 Aligned_cols=31 Identities=6% Similarity=-0.001 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|.+|+++.+++.|||+..
T Consensus 228 ~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~ 258 (277)
T cd06640 228 PFKEFIDACLNKDPSFRPTAKELLKHKFIVK 258 (277)
T ss_pred HHHHHHHHHcccCcccCcCHHHHHhChHhhh
Confidence 4567888888889999999999999999864
No 290
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=43.82 E-value=13 Score=30.17 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHHHHHHHhcccc-----ccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSA-----KKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~-----~al~hpw~~~ 58 (222)
....++|+.++...|.+|.++. ++++|||+..
T Consensus 223 ~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~ 259 (318)
T cd05582 223 PEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFST 259 (318)
T ss_pred HHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCC
Confidence 3577899999999999999864 5999999863
No 291
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=43.81 E-value=59 Score=27.15 Aligned_cols=43 Identities=26% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 027506 165 DGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFM 215 (222)
Q Consensus 165 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l 215 (222)
+|.||++|-...++.+... .+++.++.+++.++ |+-+||-.++
T Consensus 300 ~G~itReeal~~v~~~d~~--~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGE--FPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhccc--ccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 7888888887777775322 45677777777775 6667776654
No 292
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=43.68 E-value=6.1 Score=31.20 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|.+|+++.+++.|||+..
T Consensus 228 ~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~~~ 258 (277)
T cd06641 228 PLKEFVEACLNKEPSFRPTAKELLKHKFIVR 258 (277)
T ss_pred HHHHHHHHHccCChhhCcCHHHHHhCHHHhh
Confidence 4678899999999999999999999999874
No 293
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=43.56 E-value=60 Score=18.24 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 027506 170 AMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFM 215 (222)
Q Consensus 170 ~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l 215 (222)
.+|...+|..+| .+..++..++..+.. ...++.++.++.-
T Consensus 3 ~~d~~~AL~~LG----y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG----YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT----S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 367888899999 467888888888864 2235666665543
No 294
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.14 E-value=5.8 Score=33.50 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
.....+|.+++...|..|.++.+++.|||+..
T Consensus 249 ~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~ 280 (370)
T KOG0583|consen 249 PEARSLIEKMLVPDPSTRITLLEILEHPWFQK 280 (370)
T ss_pred HHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence 45788999999999999999999999999986
No 295
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=43.02 E-value=8.2 Score=31.07 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|.+++...|..|+++.+++.|||+..
T Consensus 243 ~~~li~~~l~~~p~~Rp~~~~il~~~~~~~ 272 (307)
T cd06607 243 FRNFVDSCLQKIPQDRPSSEELLKHRFVLR 272 (307)
T ss_pred HHHHHHHHhcCChhhCcCHHHHhcChhhcc
Confidence 467788888888889999999999999874
No 296
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.68 E-value=38 Score=28.84 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHH
Q 027506 153 VKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFV 212 (222)
Q Consensus 153 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~ 212 (222)
...+|-.+- --+|+||-..-++-+.... ++...+-.+.+..|.|.||.++-+||.
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~sk----lpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVKSK----LPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHhcc----CchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 345665553 3578888777666655433 556678899999999999999999995
No 297
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=42.63 E-value=9.9 Score=31.37 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
....+++.+++...+.+|.+|..|+.||++..
T Consensus 276 ~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~ 307 (323)
T KOG0594|consen 276 PDGIELLSKLLQYDPAKRISAKGALTHPYFSE 307 (323)
T ss_pred ccHHHHHHHHhccCcccCcCHHHHhcChhhcc
Confidence 36789999999999999999999999999874
No 298
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=42.59 E-value=12 Score=30.44 Aligned_cols=30 Identities=10% Similarity=0.287 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHhcccc----ccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSA----KKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~----~al~hpw~~ 57 (222)
...++|++++...+.+|.++. ++++|||+.
T Consensus 222 ~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~ 255 (325)
T cd05604 222 TAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFE 255 (325)
T ss_pred HHHHHHHHHhccCHHhcCCCCCCHHHHhcCCCcC
Confidence 567899999999999998775 789999996
No 299
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=42.31 E-value=1e+02 Score=21.28 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Q 027506 155 EAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFD 199 (222)
Q Consensus 155 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d 199 (222)
.+|-..-..++..+|.+++.++|...|.. +....+..+++.+.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGve--vd~~~~~~f~~~L~ 47 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGAD--ADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCc--ccHHHHHHHHHHHc
Confidence 34555555677789999999999999976 77777777777773
No 300
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=42.10 E-value=1.2e+02 Score=21.13 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=47.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHH
Q 027506 140 SWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFV 212 (222)
Q Consensus 140 ~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~ 212 (222)
+.++.+....+....+.|..+.+.+.++|+..-|.....-+.+.-....+.+.++++..=.+..=.|...+|.
T Consensus 10 ~r~l~eddkvq~ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetll~~~~f~V~~~d~i 82 (130)
T COG5611 10 LRFLSEDDKVQTKAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETLLNDELFNVELKDFI 82 (130)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHhccccceecchHHH
Confidence 3344443333446788999999999999999998888876654443677778888775433322234444443
No 301
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=42.10 E-value=42 Score=22.11 Aligned_cols=71 Identities=10% Similarity=0.210 Sum_probs=39.2
Q ss_pred HHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHH-HHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKEHDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSA-ELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~-ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
.+|-+|..+.|++|.++...|...|+.+- ++-..+.-. .| ...+..++..|+.- .+.-.|+.
T Consensus 4 KyRylFslisd~~g~~~~~~l~~lL~d~l--------qip~~vgE~~aF-------g~~e~sv~sCF~~~--~~~~~I~~ 66 (90)
T PF09069_consen 4 KYRYLFSLISDSNGCMDQRKLGLLLHDVL--------QIPRAVGEGPAF-------GYIEPSVRSCFQQV--QLSPKITE 66 (90)
T ss_dssp HHHHHHHHHS-TTS-B-HHHHHHHHHHHH--------HHHHHTT-GGGG-------T--HHHHHHHHHHT--TT-S-B-H
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHH--------HHHHHhCccccc-------cCcHHHHHHHhccc--CCCCccCH
Confidence 57889999999999999999988887531 111110000 00 01244567777764 35667888
Q ss_pred HHHHHHHHH
Q 027506 171 MELQRLLCI 179 (222)
Q Consensus 171 ~el~~~l~~ 179 (222)
+.|...+..
T Consensus 67 ~~Fl~wl~~ 75 (90)
T PF09069_consen 67 NQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888777754
No 302
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=41.71 E-value=43 Score=21.09 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=11.8
Q ss_pred CCCcccHHHHHHHHHH
Q 027506 164 KDGFIDAMELQRLLCI 179 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~ 179 (222)
..|.++.+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4778888888777754
No 303
>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]
Probab=41.31 E-value=11 Score=31.27 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
-+.+++.+++...|.+|.++..||.||++..
T Consensus 285 ~ardll~~MLvi~pe~Risv~daL~HPY~~v 315 (369)
T KOG0665|consen 285 LARDLLSKMLVIDPEKRISVDDALRHPYIKV 315 (369)
T ss_pred HHHHHHHHhhccChhhcccHHHHhcCCeeee
Confidence 4668889999999999999999999998874
No 304
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=41.09 E-value=1.1e+02 Score=20.39 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKT 197 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 197 (222)
.+.++.+|..+ ...|...+.+.+.+.+| +++.+++.+-..
T Consensus 3 ~~~l~~~f~~i----~~~V~~~~Wk~laR~LG----Lse~~I~~i~~~ 42 (96)
T cd08315 3 QETLRRSFDHF----IKEVPFDSWNRLMRQLG----LSENEIDVAKAN 42 (96)
T ss_pred HhHHHHHHHHH----HHHCCHHHHHHHHHHcC----CCHHHHHHHHHH
Confidence 34567777777 33566677777777777 455566655544
No 305
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=40.84 E-value=9.9 Score=30.26 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|..|+++.+++.|||+..
T Consensus 244 ~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~ 274 (285)
T cd06648 244 RLRSFLDRMLVRDPAQRATAAELLNHPFLAK 274 (285)
T ss_pred HHHHHHHHHcccChhhCcCHHHHccCccccc
Confidence 4668888888888999999999999999874
No 306
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.44 E-value=86 Score=19.57 Aligned_cols=33 Identities=9% Similarity=0.238 Sum_probs=27.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Q 027506 164 KDGFIDAMELQRLLCILGLKEGFELENCKKMIKTF 198 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (222)
.+-.|+.+-++.++...|.+ .|+..+++++...
T Consensus 35 ~NPpine~~iR~M~~qmGqK--pSe~kI~Qvm~~i 67 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQK--PSEKKINQVMRSI 67 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCC--chHHHHHHHHHHH
Confidence 46689999999999999987 6888899888765
No 307
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=39.17 E-value=16 Score=32.15 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHHHHHHhcc---ccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKS---SAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~---~~~al~hpw~~ 57 (222)
.++.++|.+++- .+..|.- +.++-+|||+.
T Consensus 417 ~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~ 449 (550)
T KOG0605|consen 417 DEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFK 449 (550)
T ss_pred HHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccc
Confidence 468899999999 4555544 33888999997
No 308
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.79 E-value=14 Score=33.46 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=35.1
Q ss_pred HHHHhhcCcccc--cCCCCcHH-HHHHHHHHHHHHHhccccccCCCChhhHH
Q 027506 11 ALTEASNLSGWD--SMTIRSEA-QLVNKIVGDVLKKLKSSAKKNQHPFNQFS 59 (222)
Q Consensus 11 ~l~~~~~~~G~~--~~~~~~~~-~~i~~il~~~~~~~~~~~~al~hpw~~~~ 59 (222)
||..+|.--.-. .++|+... .||..++..+|..|+++..++.|+++..+
T Consensus 233 ALYHIAQNesPtLqs~eWS~~F~~Fvd~CLqKipqeRptse~ll~H~fv~R~ 284 (948)
T KOG0577|consen 233 ALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQERPTSEELLKHRFVLRE 284 (948)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHhhCcccCCcHHHHhhcchhccC
Confidence 555555444333 33455433 58999999999999999999999999743
No 309
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=38.78 E-value=8.1 Score=31.63 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|..|+++.+++.|||+..
T Consensus 270 ~l~~li~~~l~~~P~~Rps~~~il~~~~~~~ 300 (337)
T cd07852 270 DALDLLKKLLVFNPNKRLTAEEALEHPYVAQ 300 (337)
T ss_pred HHHHHHHHhccCCcccccCHHHHhhChhhhh
Confidence 4577889999999999999999999999875
No 310
>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica
Probab=38.69 E-value=13 Score=30.74 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHHHhcc---ccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKS---SAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~---~~~al~hpw~~ 57 (222)
...++|+.++. .+..|.. +.+++.|||+.
T Consensus 269 ~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~ 300 (364)
T cd05599 269 EAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFK 300 (364)
T ss_pred HHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcC
Confidence 56788888886 6777776 77999999986
No 311
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=38.67 E-value=60 Score=24.55 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=24.6
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC
Q 027506 161 DENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDK 200 (222)
Q Consensus 161 D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~ 200 (222)
..|.+|+++.++|.+.+..-+.. ++.+++.+++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~--~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLW--VTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT----HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCC--CCHHHHHHHHhhCCC
Confidence 46789999999999999886655 788999999887543
No 312
>PRK01844 hypothetical protein; Provisional
Probab=38.43 E-value=81 Score=19.82 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Q 027506 155 EAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTF 198 (222)
Q Consensus 155 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (222)
..|+.+ ...+-.|+.+-++.++...|.+ .|+..++++++.+
T Consensus 27 k~~~k~-lk~NPpine~mir~Mm~QMGqk--PSekki~Q~m~~m 67 (72)
T PRK01844 27 KYMMNY-LQKNPPINEQMLKMMMMQMGQK--PSQKKINQMMSAM 67 (72)
T ss_pred HHHHHH-HHHCCCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHH
Confidence 344444 2345689999999999999987 6889999998876
No 313
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=38.31 E-value=54 Score=18.92 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=25.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC
Q 027506 164 KDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNG 202 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 202 (222)
.+|.|+..+++.++ | ++-..+-.+++.+|..+
T Consensus 7 ~~~~itv~~~rd~l---g----~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 7 KNGEITVAEFRDLL---G----LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TTSSBEHHHHHHHH---T----S-HHHHHHHHHHHHHTT
T ss_pred cCCcCcHHHHHHHH---C----ccHHHHHHHHHHHhccC
Confidence 38999999999987 4 56677888898888654
No 314
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=38.22 E-value=15 Score=29.99 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHhcccc------ccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSA------KKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~------~al~hpw~~~ 58 (222)
...++|++++...|..|.++. ++++|||+..
T Consensus 229 ~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~ 265 (327)
T cd05617 229 KASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRS 265 (327)
T ss_pred HHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCC
Confidence 478899999999999998753 7899999863
No 315
>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent
Probab=38.05 E-value=7.5 Score=30.58 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...+++..++...|..|+++.+++.|||+.
T Consensus 230 ~~~~~i~~~l~~~p~~R~~~~~il~~~~~~ 259 (277)
T cd06917 230 LLREFVAACLDEEPKERLSAEELLKSKWIK 259 (277)
T ss_pred HHHHHHHHHcCCCcccCcCHHHHhhChHhh
Confidence 466788888888899999999999999996
No 316
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=37.88 E-value=11 Score=30.01 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~ 57 (222)
...++|.+++...|.+|. ++.++++|||+.
T Consensus 224 ~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~ 258 (290)
T cd05580 224 DAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFA 258 (290)
T ss_pred HHHHHHHHHccCCHHHccCcccCCHHHHHcCcccc
Confidence 567899999999999997 556899999986
No 317
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=37.61 E-value=7.8 Score=31.07 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|..|+++.+++.|||+..
T Consensus 245 ~l~~li~~~l~~~p~~Rpt~~eil~~~~~~~ 275 (296)
T cd06654 245 IFRDFLNRCLDMDVEKRGSAKELLQHQFLKI 275 (296)
T ss_pred HHHHHHHHHCcCCcccCcCHHHHhhChhhhc
Confidence 4567888888888999999999999999874
No 318
>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N. Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved
Probab=37.57 E-value=14 Score=30.13 Aligned_cols=30 Identities=7% Similarity=0.248 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHHhcc-----ccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKS-----SAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~-----~~~al~hpw~~ 57 (222)
...++|++++...|.+|.+ +.++++|||+.
T Consensus 227 ~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~ 261 (324)
T cd05589 227 EAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFR 261 (324)
T ss_pred HHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcC
Confidence 4678999999999999984 45789999986
No 319
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=37.43 E-value=9 Score=30.92 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|++++...|..|+++.+++.|||+..
T Consensus 242 ~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~ 272 (308)
T cd06634 242 YFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR 272 (308)
T ss_pred HHHHHHHHHhhCCcccCCCHHHHhhCccccc
Confidence 3567888888888999999999999999864
No 320
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=37.16 E-value=11 Score=34.47 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...+++..++...|.+|.++.+++.|||+.
T Consensus 609 ~~~~~l~~lL~~dP~~R~ta~e~l~h~~~~ 638 (669)
T cd05610 609 NAQNAIEILLTMDPTKRAGLKELKQHPLFH 638 (669)
T ss_pred HHHHHHHHHcccChhHCcCHHHHHhCHhhc
Confidence 356788999999999999999999999985
No 321
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=37.06 E-value=15 Score=32.17 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhHH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQFS 59 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~~ 59 (222)
...++|+++|..+|..|.+..++-.|||+..+
T Consensus 347 ~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~ 378 (576)
T KOG0585|consen 347 DLKDLIKRLLEKDPEQRITLPDIKLHPWVTRD 378 (576)
T ss_pred HHHHHHHHHhhcChhheeehhhheecceeccC
Confidence 56789999999999999988888899999743
No 322
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.87 E-value=1.2e+02 Score=19.63 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLK 183 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~ 183 (222)
.+....+...+=..+.+.-|.+.|.++|...|..
T Consensus 46 ~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~~~~~ 79 (86)
T cd08318 46 KMQAKQLLVAWQDREGSQATPETLITALNAAGLN 79 (86)
T ss_pred HHHHHHHHHHHHHhcCccccHHHHHHHHHHcCcH
Confidence 4455666666544434567888999999888753
No 323
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=36.63 E-value=10 Score=30.40 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|..++...+..|+++.+++.|||+..
T Consensus 245 l~~li~~~l~~~p~~Rp~~~~il~h~~~~~ 274 (293)
T cd06647 245 FRDFLNRCLEMDVEKRGSAKELLQHPFLKI 274 (293)
T ss_pred HHHHHHHHccCChhhCcCHHHHhcCHHHhc
Confidence 557888888888999998889999999973
No 324
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=36.38 E-value=14 Score=29.65 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHHHHhccc---cccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSS---AKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~---~~al~hpw~~ 57 (222)
...++|++++...|..|+++ .+.+.|||+.
T Consensus 245 ~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~ 277 (305)
T cd05609 245 DAQDLISRLLRQNPLERLGTGGAFEVKQHRFFL 277 (305)
T ss_pred HHHHHHHHHhccChhhccCccCHHHHHhCcccc
Confidence 36789999999999999874 4889999985
No 325
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.14 E-value=1.1e+02 Score=19.31 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC
Q 027506 107 LSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLK 183 (222)
Q Consensus 107 i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~ 183 (222)
++..+.+.+.+.+|+..+. +..+.. ......+.+..+...+=......=|.+.|.++|...|..
T Consensus 9 v~~~~Wk~laR~LGls~~~-I~~ie~------------~~~~~~eq~~~mL~~W~~k~G~~At~~~L~~aL~~~~~~ 72 (79)
T cd08784 9 VPFDQHKRFFRKLGLSDNE-IKVAEL------------DNPQHRDRVYELLRIWRNKEGRKATLNTLIKALKDLDQR 72 (79)
T ss_pred CCHHHHHHHHHHcCCCHHH-HHHHHH------------cCCchHHHHHHHHHHHHhccCcCcHHHHHHHHHHHcccH
Confidence 6678888888888876541 222221 111123455666666533333355788888888888764
No 326
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=35.80 E-value=18 Score=29.37 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHHHhccc-----cccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSS-----AKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~-----~~al~hpw~~ 57 (222)
...++|++++...|.+|.++ .+++.|||+.
T Consensus 227 ~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~ 261 (324)
T cd05587 227 EAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFR 261 (324)
T ss_pred HHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcC
Confidence 56689999999999999876 4788999986
No 327
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.73 E-value=12 Score=32.45 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 31 QLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 31 ~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
++|..++..+|.+|++|...++|+|+..
T Consensus 271 e~i~~CL~kDP~kRptAskLlkh~FFk~ 298 (516)
T KOG0582|consen 271 EMIALCLVKDPSKRPTASKLLKHAFFKK 298 (516)
T ss_pred HHHHHHhhcCcccCCCHHHHhccHHHhh
Confidence 7899999999999999999999999973
No 328
>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=35.61 E-value=11 Score=29.76 Aligned_cols=31 Identities=6% Similarity=-0.112 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|.+++...|..|+++.++++|||+..
T Consensus 241 ~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~ 271 (284)
T cd06620 241 DLRDFVDACLLKDPTERPTPQQLCAMPPFIQ 271 (284)
T ss_pred HHHHHHHHHhcCCcccCcCHHHHhcCccccc
Confidence 4667899999999999999999999998853
No 329
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=35.31 E-value=21 Score=23.81 Aligned_cols=15 Identities=47% Similarity=0.612 Sum_probs=7.2
Q ss_pred CCcccHHHHHHHHHH
Q 027506 165 DGFIDAMELQRLLCI 179 (222)
Q Consensus 165 ~G~I~~~el~~~l~~ 179 (222)
||.++.+|...+...
T Consensus 16 DG~v~~~E~~~i~~~ 30 (111)
T cd07176 16 DGDIDDAELQAIEAL 30 (111)
T ss_pred ccCCCHHHHHHHHHH
Confidence 455555554444443
No 330
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=35.15 E-value=38 Score=24.52 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhhc
Q 027506 153 VKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFVE 221 (222)
Q Consensus 153 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~~ 221 (222)
..-++..-+.+..|+....- -+ |.....-++.++..-+.+.+|.|++..|..+|..++++
T Consensus 56 ~~vayhhp~etd~~ftkVhk---hm------P~~~~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGd 115 (175)
T PF04876_consen 56 VYVAYHHPIETDPLFTKVHK---HM------PEFCHSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLGD 115 (175)
T ss_pred HHHHhcCccccCcchHHHHH---Hh------hHHHHHHHHHHhcCCcCCcccceeHHHHHHHHHHHhhh
Confidence 34455555666666554321 11 12333345555554444556789999999998887653
No 331
>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of
Probab=35.13 E-value=16 Score=30.45 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHh---ccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKL---KSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~---~~~~~al~hpw~~ 57 (222)
...++|.+++. .+..+ .++.+++.|||+.
T Consensus 278 ~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~ 309 (377)
T cd05629 278 EAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFR 309 (377)
T ss_pred HHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcC
Confidence 56789999887 55554 3666999999986
No 332
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.97 E-value=12 Score=32.12 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
.-++||..+++..|..|++|.++|+|+++..
T Consensus 238 ~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~ 268 (467)
T KOG0201|consen 238 PFKEFVEACLDKNPEFRPSAKELLKHKFIKR 268 (467)
T ss_pred HHHHHHHHHhhcCcccCcCHHHHhhhHHHHh
Confidence 4789999999999999999999999999874
No 333
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=34.86 E-value=77 Score=21.75 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Q 027506 169 DAMELQRLLCILGLKEGFELENCKKMIKTF 198 (222)
Q Consensus 169 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (222)
|.+|++.++.+.... ++++++++++..+
T Consensus 80 ~~dElrai~~~~~~~--~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERYT--LSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhccC--CCHHHHHHHHHHH
Confidence 355666666655433 5666666666544
No 334
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=34.81 E-value=1.4e+02 Score=27.83 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=56.3
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccH
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDA 170 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~ 170 (222)
.+.=+++.+| .++|.|..-+|+-++-.+..-+. .++++.+|...-.+++..+ .
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~l-------------------------eek~~ylF~~vA~~~sq~~-q 524 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHL-------------------------EDKYRYLFKQVASSTSQCD-Q 524 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchh-------------------------HHHHHHHHHHHcCchhhHH-H
Confidence 3444556788 78888888888776655433222 4467788888765555443 4
Q ss_pred HHH-------HHHHHHh------CCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 171 MEL-------QRLLCIL------GLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 171 ~el-------~~~l~~~------~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
..| .++.+.+ |... + +-.++..|... ++-..|++..|+..+.
T Consensus 525 ~~l~lLL~dliqipr~lGE~aAfGgsN-v-epsvrsCF~~v--~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 525 RRLGLLLHDLIQIPRQLGEVAAFGGSN-I-EPSVRSCFQFV--NNKPEIEAALFLDWMR 579 (966)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCC-C-ChHHHHHHHhc--CCCCcchHHHHHHHhc
Confidence 443 3333333 3221 2 23467777733 4456799999988764
No 335
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=34.79 E-value=87 Score=23.57 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=28.7
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Q 027506 161 DENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFD 199 (222)
Q Consensus 161 D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d 199 (222)
-.|.+|++..++|.+.+..-+.. ++.+.+.+++..-|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~--~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKW--VTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCC--CCHHHHHHHHHcCC
Confidence 35789999999999988754433 78888888887654
No 336
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=34.67 E-value=1.5e+02 Score=20.17 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 168 IDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 168 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
||.+++.++|...|.. ++.+.+..+++.+. | .+.++.+.-....
T Consensus 17 ~ta~~I~~IL~aaGve--Ve~~~~~~~~~aLa----G-k~V~eli~~g~~k 60 (105)
T cd04411 17 LTEDKIKELLSAAGAE--IEPERVKLFLSALN----G-KNIDEVISKGKEL 60 (105)
T ss_pred CCHHHHHHHHHHcCCC--cCHHHHHHHHHHHc----C-CCHHHHHHHHHhh
Confidence 9999999999999987 88888888888873 2 4667776655443
No 337
>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines
Probab=34.54 E-value=18 Score=28.66 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHHHHhcccc---ccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSA---KKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~---~al~hpw~~~ 58 (222)
...++|.+++...+..|+++. +.++|||+.-
T Consensus 238 ~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~ 271 (288)
T cd05583 238 EARDFIQKLLEKDPKKRLGANGADEIKNHPFFQG 271 (288)
T ss_pred HHHHHHHHHhcCCHhhccCcchHHHHhcCccccc
Confidence 457889999999999998754 6699999863
No 338
>smart00750 KIND kinase non-catalytic C-lobe domain. It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features
Probab=34.47 E-value=11 Score=27.41 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhHHH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQFSA 60 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~~~ 60 (222)
..++|..++...|..|+++.+++.|+|.....
T Consensus 141 ~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~~ 172 (176)
T smart00750 141 FADFMRVCASRLPQRREAANHYLAHCRALFAE 172 (176)
T ss_pred HHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Confidence 56788888888889999888999999876543
No 339
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=33.91 E-value=15 Score=29.10 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|..|+++.+++.|||+..
T Consensus 245 ~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~ 275 (286)
T cd06614 245 EFKDFLNKCLVKDPEKRPSAEELLQHPFLKK 275 (286)
T ss_pred HHHHHHHHHhccChhhCcCHHHHhhChHhhc
Confidence 4667888888888999999999999999874
No 340
>PRK10236 hypothetical protein; Provisional
Probab=32.01 E-value=2.6e+02 Score=22.14 Aligned_cols=108 Identities=9% Similarity=0.027 Sum_probs=66.8
Q ss_pred HHHHHhhhcc-CCCCcccHHHHHH---HHHHc-CCCCCc-----chhhhhhhcCHHHHHHHHhhc-CCCHHHHHHHHHHh
Q 027506 92 SKQASFNKKE-HDDESLSRDEVEM---VMRKL-TLFCSF-----EDEELPQKLGSAELSWLFEEK-EPSLEEVKEAFDVF 160 (222)
Q Consensus 92 ~l~~~F~~~D-~~~G~i~~~el~~---~l~~~-~~~~~~-----e~~~~~~~~d~~ef~~~~~~~-~~~~~~l~~~F~~~ 160 (222)
+|..+...+- |++|.+-..|-.. .+... |..+.. .+.+=++.+.-+.|..+++.+ ....+-+..+.+++
T Consensus 21 dL~~Lv~~Lt~d~dG~~R~te~lt~~~~yk~~~~~~~~~~~yw~~Ia~elq~fGgnt~~n~lRG~Gv~YreIL~DVc~~L 100 (237)
T PRK10236 21 QLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRL 100 (237)
T ss_pred HHHHHHHHHhcCCCCCEeehhhhcccHHHHhhcccchhHHHHHHHHHHHHHHhcchHHHHHHhcCCccHHHHHHHHHHHc
Confidence 5667777766 7777764443211 22221 222221 144445556778888877754 45567788999999
Q ss_pred cCCCCCcccHHHHHHHH-----HHhCCCCCCCHHHHHHHHHHhCCC
Q 027506 161 DENKDGFIDAMELQRLL-----CILGLKEGFELENCKKMIKTFDKN 201 (222)
Q Consensus 161 D~d~~G~I~~~el~~~l-----~~~~~~~~~~~~~~~~~~~~~d~~ 201 (222)
+.+-++..+..++...+ ...=.+ +++++.+++...+...
T Consensus 101 KV~y~~~~st~~iE~~il~kll~~a~~k--ms~eE~~~L~~~l~~~ 144 (237)
T PRK10236 101 KLKADKEMSTFEIEQQLLEQFLRNTWKK--MDEEHKQEFLHAVDAR 144 (237)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHhhh
Confidence 99988877777754333 222122 7888888888888764
No 341
>PHA02105 hypothetical protein
Probab=31.81 E-value=1.1e+02 Score=18.24 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHHhCCC-CCCCHHHHHHHHHHhCCCC--CCceeHHHHHHHH
Q 027506 167 FIDAMELQRLLCILGLK-EGFELENCKKMIKTFDKNG--DGRIDFKEFVKFM 215 (222)
Q Consensus 167 ~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~d~~~--dg~I~~~eF~~~l 215 (222)
.+|++|+..++..-... -.+..+.++++-..|..-. --.++|+||-.+|
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 46788888887653221 1145555655555554332 3368999997665
No 342
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=31.62 E-value=23 Score=29.56 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHhc---cccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLK---SSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~---~~~~al~hpw~~ 57 (222)
...++|.+++ ..+..|. ++.++++|||+.
T Consensus 274 ~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~ 305 (376)
T cd05598 274 EASDLILRLC-CGAEDRLGKNGADEIKAHPFFK 305 (376)
T ss_pred HHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcC
Confidence 5678888876 4788887 677999999986
No 343
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=31.11 E-value=89 Score=25.12 Aligned_cols=13 Identities=8% Similarity=0.215 Sum_probs=7.7
Q ss_pred eeHHHHHHHHHhh
Q 027506 206 IDFKEFVKFMEKS 218 (222)
Q Consensus 206 I~~~eF~~~l~~~ 218 (222)
.++.+|+..+...
T Consensus 109 ~~l~~~~~~~~~~ 121 (267)
T PRK09430 109 FPLREKLRQFRSV 121 (267)
T ss_pred CCHHHHHHHHHHH
Confidence 5566666665543
No 344
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=30.85 E-value=1.9e+02 Score=20.30 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCC--CcccHHHHHHHHHHhC------CCCCC--C--------HHHHHHHHHHhCCCCCCceeHHHH
Q 027506 150 LEEVKEAFDVFDENKD--GFIDAMELQRLLCILG------LKEGF--E--------LENCKKMIKTFDKNGDGRIDFKEF 211 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~--G~I~~~el~~~l~~~~------~~~~~--~--------~~~~~~~~~~~d~~~dg~I~~~eF 211 (222)
...+..+|+....+.. ..|+..++..++..+- .+... + +=.+.-++..+|+++.|.|+.-.|
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 4456778887765554 6799999998887541 11101 1 113456788899999999999888
Q ss_pred HHHHH
Q 027506 212 VKFME 216 (222)
Q Consensus 212 ~~~l~ 216 (222)
.-.+.
T Consensus 120 KvaL~ 124 (127)
T PF09068_consen 120 KVALI 124 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 345
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.83 E-value=23 Score=31.32 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=31.8
Q ss_pred CcccccCCCCcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 18 LSGWDSMTIRSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 18 ~~G~~~~~~~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
++.++..| ..-.+|+..+|......|.+|.+.|.||++..
T Consensus 489 lk~~~klS-~~~kdFL~~cL~~dv~~RasA~eLL~HpFl~~ 528 (550)
T KOG0578|consen 489 LKNPEKLS-PELKDFLDRCLVVDVEQRASAKELLEHPFLKM 528 (550)
T ss_pred cCCccccC-HHHHHHHHHHhhcchhcCCCHHHHhcChhhhh
Confidence 44444444 34668999999999999999999999999863
No 346
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=30.56 E-value=18 Score=28.76 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHhcc-----ccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKS-----SAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~-----~~~al~hpw~~~ 58 (222)
...++|..++...|..|.+ +.+.+.|||+..
T Consensus 231 ~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~ 266 (285)
T cd05632 231 EAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRN 266 (285)
T ss_pred HHHHHHHHHccCCHhHcCCCcccChHHHHcChhhhc
Confidence 4678999999999999998 568999999874
No 347
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=29.51 E-value=1.8e+02 Score=19.58 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC----CCCCCceeHHHHHHHHHhhhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFD----KNGDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d----~~~dg~I~~~eF~~~l~~~~~ 220 (222)
...+..-|+.+-. +|+|.+..|-..+ |++ -+.+-..++|..+- .. .+.|+.+|...++.+.-.
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~--dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMK--DSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T----S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCc--ccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHhhc
Confidence 4567778888865 8999999999987 554 35555556666542 23 456999999888876543
No 348
>COG4802 FtrB Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]
Probab=29.42 E-value=1.4e+02 Score=20.13 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHhhcCcccccCCCCcHHHHHHHHHHHHH
Q 027506 2 PEKIQKWRAALTEASNLSGWDSMTIRSEAQLVNKIVGDVL 41 (222)
Q Consensus 2 ~~~~~~w~~~l~~~~~~~G~~~~~~~~~~~~i~~il~~~~ 41 (222)
.+.+++-..-+++.|+-+||.+.+ ..++...++....
T Consensus 3 ~e~l~~my~~~eq~AeksG~~lnp---D~e~~~~v~~gL~ 39 (110)
T COG4802 3 DEELNKMYRFTEQYAEKSGYRLNP---DREFTAEVLRGLA 39 (110)
T ss_pred HHHHHHHHHHHHHHHHhcCceeCC---CHHHHHHHHHHHH
Confidence 345778888899999999999997 3444444444443
No 349
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=29.21 E-value=15 Score=29.51 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|.+|+++.+++.|||+..
T Consensus 246 ~l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~ 276 (297)
T cd06659 246 VLRDFLERMLTREPQERATAQELLDHPFLLQ 276 (297)
T ss_pred HHHHHHHHHhcCCcccCcCHHHHhhChhhcc
Confidence 3577888898888999999999999999863
No 350
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=28.83 E-value=1.1e+02 Score=18.91 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCC--CCCCCHHHHHHHHHHh
Q 027506 152 EVKEAFDVFDENKDGFIDAMELQRLLCILGL--KEGFELENCKKMIKTF 198 (222)
Q Consensus 152 ~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~--~~~~~~~~~~~~~~~~ 198 (222)
.+..+...++.+..--|-..+|+.++..+|. ....+++.+..+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 4566666666555556667777777776531 1226777888888765
No 351
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=28.42 E-value=31 Score=33.77 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
..++.+|+.++.+.|.+|++|.+.|++-|+-
T Consensus 845 ~~e~slI~~Ll~hdP~kRPtA~eLL~s~llp 875 (1351)
T KOG1035|consen 845 PEEASLIRWLLSHDPSKRPTATELLNSELLP 875 (1351)
T ss_pred hHHHHHHHHHhcCCCccCCCHHHHhhccCCC
Confidence 5688999999999999999999999998876
No 352
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=28.36 E-value=1.5e+02 Score=21.54 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=44.1
Q ss_pred CCCcccHHHHHHHHHHcCC-C--CCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 027506 103 DDESLSRDEVEMVMRKLTL-F--CSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCI 179 (222)
Q Consensus 103 ~~G~i~~~el~~~l~~~~~-~--~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 179 (222)
.+-.|+..-+..++..+-. + .+++.++++-.- --+|+.++.. .+=+..+.+....|..+-+.++|..
T Consensus 9 de~sLPkAtv~KmIke~lP~d~rvakeareliinc-CvEFI~liSs---------EAneic~~e~KKTIa~EHV~KALe~ 78 (156)
T KOG0871|consen 9 DELSLPKATVNKMIKEMLPKDVRVAKEARELIINC-CVEFINLISS---------EANEICNKEAKKTIAPEHVIKALEN 78 (156)
T ss_pred ccccCcHHHHHHHHHHhCCcccccchHHHHHHHHH-HHHHHHHHHH---------HHHHHHhHHhcccCCHHHHHHHHHH
Confidence 3445666666666665421 1 223333332211 1267777653 3556677788899999999999999
Q ss_pred hCCC
Q 027506 180 LGLK 183 (222)
Q Consensus 180 ~~~~ 183 (222)
+|+.
T Consensus 79 LgF~ 82 (156)
T KOG0871|consen 79 LGFG 82 (156)
T ss_pred cchH
Confidence 9975
No 353
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=28.27 E-value=96 Score=16.04 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=14.0
Q ss_pred cccHHHHHHHHHHhCCCC
Q 027506 167 FIDAMELQRLLCILGLKE 184 (222)
Q Consensus 167 ~I~~~el~~~l~~~~~~~ 184 (222)
.++..+|+..+...|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467788888888888763
No 354
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=27.97 E-value=20 Score=30.01 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHH--hccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKK--LKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~--~~~~~~al~hpw~~~ 58 (222)
...++|..++...+.+ |.++.+++.|||+..
T Consensus 277 ~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~ 309 (370)
T cd05621 277 HAKNLICAFLTDREVRLGRNGVEEIKQHPFFKN 309 (370)
T ss_pred HHHHHHHHHccCchhccCCCCHHHHhcCcccCC
Confidence 4667777777644443 556779999999864
No 355
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.90 E-value=3.1e+02 Score=21.82 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=35.1
Q ss_pred hcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hCCCCCCCHHHHHHHHHHhCC
Q 027506 133 KLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCI-LGLKEGFELENCKKMIKTFDK 200 (222)
Q Consensus 133 ~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-~~~~~~~~~~~~~~~~~~~d~ 200 (222)
..|.++|.+.++........|..+|+.| .|.|+ .++.. ++..+. ..+.+.+++..+-.
T Consensus 108 eedIeef~a~Y~gSEeEk~Dl~~~Y~k~----kG~m~-----~i~~~~l~~d~~-De~R~keiid~~I~ 166 (264)
T KOG0719|consen 108 EEDIEEFEANYQGSEEEKKDLLKLYNKF----KGKMN-----RILESVLCSDPK-DEDRFKEIIDEAIA 166 (264)
T ss_pred cccHHHHHHHhcccHHHHHHHHHHHHhc----CChHH-----HHHHhhhcCCcc-cHHHHHHHHHHHHh
Confidence 3467788887776655566777888876 56554 23332 233332 56677777777643
No 356
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=27.82 E-value=1.4e+02 Score=17.87 Aligned_cols=32 Identities=13% Similarity=0.030 Sum_probs=22.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Q 027506 165 DGFIDAMELQRLLCILGLKEGFELENCKKMIKTF 198 (222)
Q Consensus 165 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (222)
+-.+|.+||...+..++.. ++..++-.+...+
T Consensus 7 s~~lTeEEl~~~i~~L~~~--~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEI--PNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCC--CCHHHHHHHHHHH
Confidence 4467888888888888755 5666666666554
No 357
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.39 E-value=1.1e+02 Score=21.14 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Q 027506 169 DAMELQRLLCILGLKEGFELENCKKMIKTFD 199 (222)
Q Consensus 169 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d 199 (222)
|..|++.++...+.. ++++++++++.-.+
T Consensus 81 t~~ElRsIla~e~~~--~s~E~l~~Ildiv~ 109 (114)
T COG1460 81 TPDELRSILAKERVM--LSDEELDKILDIVD 109 (114)
T ss_pred CHHHHHHHHHHccCC--CCHHHHHHHHHHHH
Confidence 567888888887766 68888887776543
No 358
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=27.27 E-value=2.7e+02 Score=21.53 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCCCHH------------------HHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 171 MELQRLLCILGLKEGFELE------------------NCKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 171 ~el~~~l~~~~~~~~~~~~------------------~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
.+|..++.++|..|..+.. ++-+++...-....|.|+..|....+.+.-
T Consensus 61 ~~f~~~~~~lGvdp~~s~~~~s~~l~~~~~f~~ELa~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R 127 (223)
T PF04157_consen 61 SQFQSMCASLGVDPLASSKFWSESLKGSGDFYYELAVQIAEVCLATRSKNGGIISLSDLYCRYNRAR 127 (223)
T ss_dssp HHHHHHHHHHT--CHCCTTCCCCCCSCHHHHHHHHHHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCcccchhhhhhccccchhHHHHHHHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhc
Confidence 4788888888875322111 122222233333457899999988887743
No 359
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=27.15 E-value=92 Score=18.82 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=17.7
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHH
Q 027506 167 FIDAMELQRLLCILGLKEGFELENCKK 193 (222)
Q Consensus 167 ~I~~~el~~~l~~~~~~~~~~~~~~~~ 193 (222)
.|+.++|..+|+... ++++.+++..
T Consensus 29 ~it~~DF~~Al~~~k--pSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVK--PSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCG--GSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcC--CCCCHHHHHH
Confidence 478888888888765 5577777764
No 360
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=27.06 E-value=26 Score=29.25 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=23.6
Q ss_pred CcHHHHHHHHHHHHHHHhcc---ccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKS---SAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~---~~~al~hpw~~~ 58 (222)
..+.++|.+++. .|.+|.. +.+++.|||+..
T Consensus 277 ~~~~~li~~l~~-~p~~R~~~~~~~ei~~hp~f~~ 310 (382)
T cd05625 277 PEASDLIIKLCR-GPEDRLGKNGADEIKAHPFFKT 310 (382)
T ss_pred HHHHHHHHHHcc-CHhHcCCCCCHHHHhcCCCcCC
Confidence 357788888775 6777766 668999999863
No 361
>COG5562 Phage envelope protein [General function prediction only]
Probab=26.89 E-value=47 Score=23.66 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=27.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q 027506 165 DGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEK 217 (222)
Q Consensus 165 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~ 217 (222)
+|.|....++.+. |.........+... ...+..|..+|+||+..+..
T Consensus 54 ~~~Il~~g~k~~~---~V~~~~n~~~i~~a---l~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 54 DGVILIKGVKKVV---GVAEVFNTTLIKTA---LRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred CCEEEeecccccc---ceecccCHHHHHHH---HHHHhcCCccHHHHHHHHHh
Confidence 5566555555544 22222233334433 44567899999999998765
No 362
>PLN00181 protein SPA1-RELATED; Provisional
Probab=26.81 E-value=17 Score=34.01 Aligned_cols=32 Identities=16% Similarity=-0.052 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..+..++..++...|..|+++.+++.|||+..
T Consensus 239 ~~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~ 270 (793)
T PLN00181 239 PKEASFCLWLLHPEPSCRPSMSELLQSEFINE 270 (793)
T ss_pred HHHHHHHHHhCCCChhhCcChHHHhhchhhhh
Confidence 35667888888899999999999999999974
No 363
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=26.54 E-value=1e+02 Score=25.52 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHHHHhcc-----ccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKS-----SAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~-----~~~al~hpw~~ 57 (222)
+.+.++|++++..+..+|.- ..++-+|||+.
T Consensus 266 ~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~ 301 (355)
T KOG0616|consen 266 SDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFK 301 (355)
T ss_pred HHHHHHHHHHHhhhhHhhhcCcCCCccccccCcccc
Confidence 46889999999999999822 22677999998
No 364
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=26.51 E-value=1.9e+02 Score=26.97 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhhh
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~~ 220 (222)
+...+.+|+..-+.+.-+|..+++... +.+++.+..+..++...++.|+++.|.......+.
T Consensus 403 ~~aA~~iF~nv~~p~~~~i~ld~~~~f---------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ 464 (714)
T KOG4629|consen 403 KIAARKIFKNVAKPGVILIDLDDLLRF---------MGDEEAERAFSLFEGASDENITRSSFKEWIVNIYR 464 (714)
T ss_pred HHHHHHHHhccCCCCccchhhhhhhhc---------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHH
Confidence 345677899888888888887777553 45678888999988876777999999988776554
No 365
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=26.41 E-value=2.2e+02 Score=19.47 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=26.3
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Q 027506 167 FIDAMELQRLLCILGLKEGFELENCKKMIKTF 198 (222)
Q Consensus 167 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (222)
.||.+.+..+|...|.. +.+..+..+++.+
T Consensus 16 ~it~e~I~~IL~AAGve--Vee~~~k~~v~aL 45 (106)
T PRK06402 16 EINEDNLKKVLEAAGVE--VDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHcCCC--ccHHHHHHHHHHH
Confidence 89999999999999977 7777888888776
No 366
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=26.35 E-value=23 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHHHhcccc-ccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSA-KKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~-~al~hpw~~~ 58 (222)
...++|..++...|.+|.++. +++.|||+..
T Consensus 222 ~~~~ll~~~l~~~P~~R~~~~~~l~~h~~~~~ 253 (316)
T cd05592 222 EAKDCLSKLFERDPTKRLGVDGDIRQHPFFRG 253 (316)
T ss_pred HHHHHHHHHccCCHHHcCCChHHHHcCcccCC
Confidence 467899999999999998776 7789999863
No 367
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.08 E-value=1.4e+02 Score=25.51 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 027506 150 LEEVKEAFDVFDENKDGFIDAMELQRLLC 178 (222)
Q Consensus 150 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~ 178 (222)
...+-.+++.-|.|.+|.++.+||.-+-.
T Consensus 476 nsvlgkiwklad~d~dg~ld~eefala~h 504 (532)
T KOG1954|consen 476 NSVLGKIWKLADIDKDGMLDDEEFALANH 504 (532)
T ss_pred hhHHHhhhhhhcCCcccCcCHHHHHHHHH
Confidence 34678899999999999999999866544
No 368
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=25.74 E-value=1.6e+02 Score=19.24 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 027506 168 IDAMELQRLLCILGLKEGFELENCKKMIKT 197 (222)
Q Consensus 168 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 197 (222)
||.+++.++.+-..+. +++++++.+...
T Consensus 1 i~~~~v~~lA~La~L~--l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLE--LSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCC--CCHHHHHHHHHH
Confidence 4667777776665555 677666544443
No 369
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.26 E-value=32 Score=30.70 Aligned_cols=30 Identities=17% Similarity=0.061 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
+..++|..++.+.|++|.+..+..+|+|.+
T Consensus 245 eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq 274 (864)
T KOG4717|consen 245 ECRDLIQSMLVRDPKKRASLEEIVSTSWLQ 274 (864)
T ss_pred HHHHHHHHHHhcCchhhccHHHHhcccccc
Confidence 567899999999999998888999999997
No 370
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=25.19 E-value=21 Score=29.85 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHHH--hccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKK--LKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~--~~~~~~al~hpw~~ 57 (222)
.+.++|.+++...++. |.++.+++.|||+.
T Consensus 278 ~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~ 309 (381)
T cd05626 278 EAVDLITKLCCSAEERLGRNGADDIKAHPFFS 309 (381)
T ss_pred HHHHHHHHHccCcccccCCCCHHHHhcCcccC
Confidence 5677888876544444 66777999999986
No 371
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=24.32 E-value=2.1e+02 Score=18.68 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=4.2
Q ss_pred CCcccHHHH
Q 027506 165 DGFIDAMEL 173 (222)
Q Consensus 165 ~G~I~~~el 173 (222)
||.++..|.
T Consensus 13 DG~v~~~E~ 21 (106)
T cd07316 13 DGRVSEAEI 21 (106)
T ss_pred cCCcCHHHH
Confidence 444554443
No 372
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.31 E-value=1.2e+02 Score=15.79 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=13.2
Q ss_pred cccHHHHHHHHHHhCCCC
Q 027506 167 FIDAMELQRLLCILGLKE 184 (222)
Q Consensus 167 ~I~~~el~~~l~~~~~~~ 184 (222)
.++..||+..|...|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 467788888888888763
No 373
>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=24.25 E-value=30 Score=27.42 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHHHhc-----cccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLK-----SSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~-----~~~~al~hpw~~~ 58 (222)
...++|.+++...|..|. .+.+++.|||+..
T Consensus 238 ~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~ 273 (290)
T cd05613 238 LAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQK 273 (290)
T ss_pred HHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCccccc
Confidence 356788888888899996 4458999999874
No 374
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=24.18 E-value=2.5e+02 Score=19.46 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC
Q 027506 106 SLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLK 183 (222)
Q Consensus 106 ~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~ 183 (222)
.+=.+=+..+|+..|...+ .+.++...+ ...|+.+.++.++..+..+
T Consensus 53 eVlaEpIQTvmRr~g~~~p-------------------------YE~LK~lTR------g~~it~~~l~~fI~~L~ip 99 (115)
T PF08328_consen 53 EVLAEPIQTVMRRYGIPNP-------------------------YEKLKELTR------GKKITKEDLREFIESLDIP 99 (115)
T ss_dssp GGGHHHHHHHHHHTT-SSH-------------------------HHHHHHHHT------TS---HHHHHHHHHTSSS-
T ss_pred HHHHHHHHHHHHHcCCCCH-------------------------HHHHHHHHc------CCCCCHHHHHHHHHhCCCC
Confidence 4556667777777777655 234444443 3489999999999887743
No 375
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=23.82 E-value=1.6e+02 Score=18.77 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC-CCCceeHHHHHHHH
Q 027506 170 AMELQRLLCILGLKEGFELENCKKMIKTFDKN-GDGRIDFKEFVKFM 215 (222)
Q Consensus 170 ~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~-~dg~I~~~eF~~~l 215 (222)
.++|..+|. |.+ .+.+.+.+.+..++.+ .-|.++-+||++++
T Consensus 44 i~~le~~L~--G~~--~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GCP--YDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TCB--SSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hcC--CCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 556666653 544 6677777777777543 23467777777654
No 376
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.42 E-value=94 Score=26.32 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=29.3
Q ss_pred ccHHHHHHHhhhcc-CCCCcccHHHHHHHHHHcCC
Q 027506 88 WDEKSKQASFNKKE-HDDESLSRDEVEMVMRKLTL 121 (222)
Q Consensus 88 ~~~~~l~~~F~~~D-~~~G~i~~~el~~~l~~~~~ 121 (222)
.+.+++++.|...| .++|+|+..-+..++..++.
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~ 340 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNR 340 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcc
Confidence 34458999999999 88999999999999988773
No 377
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.22 E-value=1.9e+02 Score=17.81 Aligned_cols=48 Identities=15% Similarity=0.434 Sum_probs=34.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 164 KDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
..|.|+.+|...+... + .+.+....++.....-| .=.|..|+..+...
T Consensus 24 ~~~vlt~~e~~~i~~~---~--~~~~k~~~Lld~l~~kg--~~af~~F~~~L~~~ 71 (80)
T cd01671 24 SDGVLTEEEYEKIRSE---S--TRQDKARKLLDILPRKG--PKAFQSFLQALQET 71 (80)
T ss_pred HcCCCCHHHHHHHHcC---C--ChHHHHHHHHHHHHhcC--hHHHHHHHHHHHhc
Confidence 3688998888876542 1 35677788888887644 44788899888753
No 378
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=22.98 E-value=84 Score=25.89 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhh
Q 027506 169 DAMELQRLLCIL-GLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKSF 219 (222)
Q Consensus 169 ~~~el~~~l~~~-~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~~ 219 (222)
|.+.|+.++... |+. ...-.-..+|...|.|+||.++-.|.-..++.-+
T Consensus 225 SkdQLkEVWEE~DgLd--pn~fdPKTFF~LHD~NsDGfldeqELEaLFtkEL 274 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLD--PNQFDPKTFFALHDLNSDGFLDEQELEALFTKEL 274 (442)
T ss_pred cHHHHHHHHHHhcCCC--cccCCcchheeeeccCCcccccHHHHHHHHHHHH
Confidence 677888888765 322 1222345788999999999999999888776543
No 379
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=22.96 E-value=1.1e+02 Score=15.62 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=9.9
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHH
Q 027506 190 NCKKMIKTFDKNGDGRIDFKEFVKFME 216 (222)
Q Consensus 190 ~~~~~~~~~d~~~dg~I~~~eF~~~l~ 216 (222)
++..++.++-.- | |+-+||..++.
T Consensus 4 EW~~Li~eA~~~--G-ls~eeir~FL~ 27 (30)
T PF08671_consen 4 EWVELIKEAKES--G-LSKEEIREFLE 27 (30)
T ss_dssp HHHHHHHHHHHT--T---HHHHHHHHH
T ss_pred HHHHHHHHHHHc--C-CCHHHHHHHHH
Confidence 444444444221 2 55555555543
No 380
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=22.92 E-value=23 Score=28.66 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 29 EAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 29 ~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
..++|.+++...|.+|+++.+++.|||...
T Consensus 253 l~~li~~~l~~~p~~Rpt~~~il~~~~~~~ 282 (317)
T cd06635 253 FRNFVDSCLQKIPQDRPTSEELLKHMFVLR 282 (317)
T ss_pred HHHHHHHHccCCcccCcCHHHHHhChhhhc
Confidence 567888888888999999999999999853
No 381
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=22.67 E-value=40 Score=27.35 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHHHHHHhccc-----cccCCCChhhH
Q 027506 27 RSEAQLVNKIVGDVLKKLKSS-----AKKNQHPFNQF 58 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~-----~~al~hpw~~~ 58 (222)
....++|.+++...|.+|.+. .+++.|||+..
T Consensus 226 ~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~ 262 (323)
T cd05616 226 KEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRY 262 (323)
T ss_pred HHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCC
Confidence 357789999999999999875 37889999863
No 382
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=22.66 E-value=34 Score=28.28 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHhcc---ccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKS---SAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~---~~~al~hpw~~ 57 (222)
.+.++|.+++. .+..|.. +.++++|||+.
T Consensus 266 ~~~~li~~l~~-~p~~R~~~~~~~ei~~hp~f~ 297 (360)
T cd05627 266 KAKDLILRFCT-DSENRIGSNGVEEIKSHPFFE 297 (360)
T ss_pred HHHHHHHHhcc-ChhhcCCCCCHHHHhcCCCCC
Confidence 56778888764 5677654 45899999987
No 383
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=22.40 E-value=2.5e+02 Score=24.85 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=42.8
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHH---hCC----C-CCCceeHHHHHHHHHh
Q 027506 155 EAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKT---FDK----N-GDGRIDFKEFVKFMEK 217 (222)
Q Consensus 155 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~---~d~----~-~dg~I~~~eF~~~l~~ 217 (222)
.+|..|-..+++.|+..-|.++|++.|+. -++--+..+|.+ +|. + ..+.++-+-|..++-.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLr--tsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLR--TSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCC--cCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 46777766667999999999999999986 444445555544 443 1 2457888888777643
No 384
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=22.39 E-value=33 Score=30.50 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
..+.++|++|+...++.|.++.+.-.||++.
T Consensus 312 ~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~ 342 (604)
T KOG0592|consen 312 EDARDLIKKLLVRDPSDRLTSQQIKAHPFFE 342 (604)
T ss_pred HHHHHHHHHHHccCccccccHHHHhhCcccc
Confidence 3688999999999999999999999999985
No 385
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=22.34 E-value=20 Score=29.55 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 30 AQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 30 ~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
.++|+.++...|..|.+|.+.+.||++.-
T Consensus 260 ~DFi~~CLiK~PE~R~TA~~L~~H~Fikn 288 (502)
T KOG0574|consen 260 NDFIRSCLIKKPEERKTALRLCEHTFIKN 288 (502)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhhcC
Confidence 47999999999999999999999999873
No 386
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=22.31 E-value=2e+02 Score=18.72 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=20.1
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Q 027506 167 FIDAMELQRLLCILGLKEGFELENCKKMIKTF 198 (222)
Q Consensus 167 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 198 (222)
.|+.+++.++.+...+. ++++++..+...+
T Consensus 2 ~i~~e~i~~la~La~l~--l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLE--LSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCC--CCHHHHHHHHHHH
Confidence 37788888887776665 7777665544443
No 387
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=22.26 E-value=42 Score=27.23 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHHHHHHhcccc----ccCCCChhh
Q 027506 27 RSEAQLVNKIVGDVLKKLKSSA----KKNQHPFNQ 57 (222)
Q Consensus 27 ~~~~~~i~~il~~~~~~~~~~~----~al~hpw~~ 57 (222)
....++|++++...|.+|.++. ++++|+|+.
T Consensus 221 ~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~ 255 (325)
T cd05602 221 NSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFS 255 (325)
T ss_pred HHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcccC
Confidence 3567899999999999998876 688999975
No 388
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=21.96 E-value=1.3e+02 Score=23.86 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=24.7
Q ss_pred cCccHHHHHHHhhhccCCCCcccHHHHHHHHHHcCCCCC
Q 027506 86 RNWDEKSKQASFNKKEHDDESLSRDEVEMVMRKLTLFCS 124 (222)
Q Consensus 86 ~~~~~~~l~~~F~~~D~~~G~i~~~el~~~l~~~~~~~~ 124 (222)
.-++.+++++++..++..+|.++..++.. .+|...+
T Consensus 178 SySEleAv~~IL~~L~~~egrlse~eLAe---rlGVSRs 213 (251)
T TIGR02787 178 SYSELEAVEHIFEELDGNEGLLVASKIAD---RVGITRS 213 (251)
T ss_pred cHhHHHHHHHHHHHhccccccccHHHHHH---HHCCCHH
Confidence 34455577788888885578888888865 3465554
No 389
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=21.88 E-value=2.4e+02 Score=18.38 Aligned_cols=48 Identities=8% Similarity=0.231 Sum_probs=34.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q 027506 164 KDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGDGRIDFKEFVKFMEKS 218 (222)
Q Consensus 164 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~dg~I~~~eF~~~l~~~ 218 (222)
++|.|+.++...+... + .+.+.+.+++..+-. .|..-.+-|..++...
T Consensus 26 ~n~~it~E~y~~V~a~---~--T~qdkmRkLld~v~a--kG~~~k~~F~~iL~e~ 73 (85)
T cd08324 26 KNDYFSTEDAEIVCAC---P--TQPDKVRKILDLVQS--KGEEVSEYFLYLLQQL 73 (85)
T ss_pred ccCCccHHHHHHHHhC---C--CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHH
Confidence 5889999998776532 2 567888888887543 4566677788777653
No 390
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=21.56 E-value=31 Score=17.60 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=9.9
Q ss_pred HHHHHhCCCCCCceeHH
Q 027506 193 KMIKTFDKNGDGRIDFK 209 (222)
Q Consensus 193 ~~~~~~d~~~dg~I~~~ 209 (222)
.+++.-|.|++-+|+.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 45555666666666543
No 391
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=21.41 E-value=31 Score=33.35 Aligned_cols=30 Identities=10% Similarity=-0.015 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
...++|..++...|..|+++.++|.|||+.
T Consensus 270 eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik 299 (1021)
T PTZ00266 270 ELNILIKNLLNLSAKERPSALQCLGYQIIK 299 (1021)
T ss_pred HHHHHHHHHhcCChhHCcCHHHHhccHHHh
Confidence 467899999999999999999999999986
No 392
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=21.35 E-value=42 Score=27.14 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHHhcccc----ccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSA----KKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~----~al~hpw~~ 57 (222)
...++|..++...+..|.++. ++++|||+.
T Consensus 222 ~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~ 255 (321)
T cd05603 222 AACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFS 255 (321)
T ss_pred HHHHHHHHHccCCHhhcCCCCCCHHHHhCCCCcC
Confidence 467899999999999998765 788999986
No 393
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=21.32 E-value=24 Score=26.86 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhh
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQ 57 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~ 57 (222)
.-.+++++++.-.|..+.+|..|+.||++.
T Consensus 258 ~grdllqkll~cnp~qrisaeaalqhpyf~ 287 (292)
T KOG0662|consen 258 TGRDLLQKLLKCNPAQRISAEAALQHPYFS 287 (292)
T ss_pred hhHHHHHHHhccCcccccCHHHHhcCcccc
Confidence 456899999999999999999999999864
No 394
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=21.19 E-value=1.7e+02 Score=16.52 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 027506 151 EEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKT 197 (222)
Q Consensus 151 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 197 (222)
..|...|.. +.+.+.+++..+...+| ++...|...|..
T Consensus 13 ~~Le~~f~~-----~~~P~~~~~~~la~~~~----l~~~qV~~WF~n 50 (59)
T cd00086 13 EELEKEFEK-----NPYPSREEREELAKELG----LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHh-----CCCCCHHHHHHHHHHHC----cCHHHHHHHHHH
Confidence 356667766 66999999999988888 566778777654
No 395
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.82 E-value=2.1e+02 Score=17.25 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCC
Q 027506 153 VKEAFDVFDENKDGFIDAMELQRLLCILGLK 183 (222)
Q Consensus 153 l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~ 183 (222)
+..+++.++.+...-|+.+|...-...+|.+
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSS
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhcccc
Confidence 4567777777777788888888888888864
No 396
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=20.67 E-value=1.9e+02 Score=22.16 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCC
Q 027506 136 SAELSWLFEEKEPSLEEVKEAFDVFDENKDGFIDAMELQRLLCILGLKEGFELENCKKMIKTFDKNGD 203 (222)
Q Consensus 136 ~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~d~~~d 203 (222)
..+|+..-.++...+.+.++-=..++. +-.-.++|+..++...| +++++.+.+.+.+-.+++
T Consensus 50 ~G~yls~~se~~~~~~e~~re~~e~~~--~pe~e~~el~~iy~~~G----l~~~~a~~i~~~l~~~~~ 111 (213)
T PF01988_consen 50 VGEYLSVKSERDLYEAEREREEWELEN--NPEEEKEELVEIYRAKG----LSEEDAEEIAEELSKDKD 111 (213)
T ss_pred HHHHHHHHhhhhHHHHHhHHHHHHHHh--ChHhHHHHHHHHHHHCC----CCHHHHHHHHHHHHhCch
Confidence 346666554444444444443333333 33445668889888877 566777777777665554
No 397
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=20.60 E-value=30 Score=30.36 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHHHhccccccCCCChhhH
Q 027506 28 SEAQLVNKIVGDVLKKLKSSAKKNQHPFNQF 58 (222)
Q Consensus 28 ~~~~~i~~il~~~~~~~~~~~~al~hpw~~~ 58 (222)
...++|..++...|.+|+++.+++.|||...
T Consensus 272 ~l~~li~~~L~~dP~~RPs~~ell~~p~~~~ 302 (496)
T PTZ00283 272 EMQEIVTALLSSDPKRRPSSSKLLNMPICKL 302 (496)
T ss_pred HHHHHHHHHcccChhhCcCHHHHHhCHHHHH
Confidence 4677899999999999999999999999763
No 398
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.28 E-value=2.8e+02 Score=19.52 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=27.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCcchhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHhcCCCCCcc
Q 027506 103 DDESLSRDEVEMVMRKLTLFCSFEDEELPQKLGSAELSWLFEEKEPSLEEVKEAFDVFDENKDGFI 168 (222)
Q Consensus 103 ~~G~i~~~el~~~l~~~~~~~~~e~~~~~~~~d~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I 168 (222)
..|.||.+|=+++| +...+...++| ......+|+.=|+...|..
T Consensus 52 ~~~~iTlqEa~qIL---nV~~~ln~eei-------------------~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 52 SNGKITLQEAQQIL---NVKEPLNREEI-------------------EKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred ccccccHHHHhhHh---CCCCCCCHHHH-------------------HHHHHHHHhccCcccCcce
Confidence 45679999988877 44333223343 2356778888888866643
No 399
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=20.18 E-value=59 Score=20.93 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhcCc
Q 027506 5 IQKWRAALTEASNLS 19 (222)
Q Consensus 5 ~~~w~~~l~~~~~~~ 19 (222)
|..|+.||++..+..
T Consensus 26 l~~W~~aL~k~~~~~ 40 (80)
T PF10579_consen 26 LQKWRKALEKITDRE 40 (80)
T ss_pred HHHHHHHHhhcCChH
Confidence 889999999988744
No 400
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=20.17 E-value=3.1e+02 Score=18.96 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=9.8
Q ss_pred CceeHHHHHHHHHhhhh
Q 027506 204 GRIDFKEFVKFMEKSFV 220 (222)
Q Consensus 204 g~I~~~eF~~~l~~~~~ 220 (222)
|.-+...|...+++.++
T Consensus 85 Gf~s~s~F~r~Fkk~~G 101 (127)
T PRK11511 85 GFESQQTLTRTFKNYFD 101 (127)
T ss_pred CCCCHHHHHHHHHHHHC
Confidence 44555666666666554
No 401
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.04 E-value=1.3e+02 Score=16.84 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=14.7
Q ss_pred cccHHHHHHHHHHhCCCCC
Q 027506 167 FIDAMELQRLLCILGLKEG 185 (222)
Q Consensus 167 ~I~~~el~~~l~~~~~~~~ 185 (222)
.+|-+||+..|..+|.+++
T Consensus 5 ~LSd~eL~~~L~~~G~~~g 23 (44)
T smart00540 5 RLSDAELRAELKQYGLPPG 23 (44)
T ss_pred HcCHHHHHHHHHHcCCCCC
Confidence 4677889999988887653
Done!