BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027509
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HF9|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
pdb|2HF9|B Chain B, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
Length = 226
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 88 GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
G +G+GKT L+ L L+DKY +A + D+ K D E + ++GA ++ + TG
Sbjct: 45 GAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA----KVVPLNTGKEC 100
Query: 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDK 206
H D + LE+L NL + DLL E+ G+ + A+F I+ I G D
Sbjct: 101 HL----DAHLVGHALEDL-NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDT 155
Query: 207 IPRKGGPGITQ-ADLL 221
I + PGI + ADL+
Sbjct: 156 IEKH--PGIMKTADLI 169
>pdb|2HF8|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form, In Complex With
Zinc
pdb|2HF8|B Chain B, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form, In Complex With
Zinc
Length = 226
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 88 GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
G +G+GKT L+ L L+DKY +A + D+ K D E ++GA ++ + TG
Sbjct: 45 GAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERXEKHGA----KVVPLNTGKEC 100
Query: 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDK 206
H D + LE+L NL + DLL E+ G+ + A+F I+ I G D
Sbjct: 101 HL----DAHLVGHALEDL-NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDT 155
Query: 207 IPRKGGPGITQ-ADLL 221
I + PGI + ADL+
Sbjct: 156 IEKH--PGIXKTADLI 169
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 19/152 (12%)
Query: 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR 139
AF VG+ GP G GK+ + K L ++ + L+ + D + G G+L ++ R
Sbjct: 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSG------GSLLGDKTR 127
Query: 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL---------AANFS-R 189
E +A IR S G L ++ +LLCE G ++ + F+
Sbjct: 128 MTELSRDMNAYIRP--SPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVA 185
Query: 190 ELADYIIYIIDVSGGDKIPRKGGPGITQADLL 221
++ D + ++ +GGD++ I ADL+
Sbjct: 186 DMVDMFVLLLPPAGGDELQGIKRGIIEMADLV 217
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLA-AVTNDIFTKE--DGEFLM 128
I S+ RA V + GP GTGKTAL LA+ + L K V +++++ E E LM
Sbjct: 56 IKSKKMAGRA--VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM 113
Query: 129 RN 130
N
Sbjct: 114 EN 115
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
E+A G T K L ++ F+RD L V ++ KED + L+R L + +
Sbjct: 60 EKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDSDTLVR-CPLTDPEV 118
Query: 139 RAVETGGCPHAAIREDI 155
+ GC + +D+
Sbjct: 119 TSYSLKGCQGKPLPKDL 135
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 21/133 (15%)
Query: 57 EPIYSPGYFSRRAPPILSRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115
+ +++P Y PI++ N N T G +G+G AL +AL K + +S+ A+
Sbjct: 22 KTLFAPIY------PIIAENIINRFGITAGTCIDIGSGPGALSIALAK--QSDFSIRALD 73
Query: 116 NDIFTKEDGEFLMRN--GALPEERIRAVETGGCPHAAIRE---DISINLGPL---EELSN 167
F+K E ++N A +RI+ V+ G + I + D+ ++ G + E+++
Sbjct: 74 ---FSKHXNEIALKNIADANLNDRIQIVQ-GDVHNIPIEDNYADLIVSRGSVFFWEDVAT 129
Query: 168 LFKADLLLCESGG 180
F+ + +SGG
Sbjct: 130 AFREIYRILKSGG 142
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 21/98 (21%)
Query: 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142
+G+ G +GTGK+ +C+ L++KY V D E L E + + VE
Sbjct: 14 VIGVTGKIGTGKS----TVCEILKNKYGAHVVNVDRIGHE---------VLEEVKEKLVE 60
Query: 143 TGGCPHAAIREDISINLGPL-----EELSNLFKADLLL 175
G ++ ED +N L E NL K +LL+
Sbjct: 61 LFG---GSVLEDGKVNRKKLAGIVFESRENLKKLELLV 95
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 118 IFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE 164
+F KE G F G++P E + GG + E++S++ LEE
Sbjct: 22 VFPKEGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEE 68
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
E+A G T K L ++ F+RD L V ++ KED + L+R L + +
Sbjct: 85 EKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVR-CPLTDPEV 143
Query: 139 RAVETGGCPHAAIREDI 155
GC + +D+
Sbjct: 144 TNYSLKGCQGKPLPKDL 160
>pdb|2P0E|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Tiazofurin
pdb|2QSY|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With Adp
pdb|2QSZ|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Mononucleotide
pdb|2QT0|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside And An Atp Analogue
pdb|2QT1|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside
Length = 207
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEERI 138
+ F +GI G +GKT L L K L + + ++ D F K + E +NG L + +
Sbjct: 20 KTFIIGISGVTNSGKTTLAKNLQKHLPN---CSVISQDDFFKPESEIETDKNGFLQYDVL 76
Query: 139 RAV 141
A+
Sbjct: 77 EAL 79
>pdb|2QG6|A Chain A, Crystal Structure Of Human Nicotinamide Riboside Kinase
(Nrk1) In Complex With Nicotinamide Mononucleotide (Nmn)
pdb|2QL6|A Chain A, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|B Chain B, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|C Chain C, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|D Chain D, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|E Chain E, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|F Chain F, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|G Chain G, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|H Chain H, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|I Chain I, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|J Chain J, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|K Chain K, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|L Chain L, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|M Chain M, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|N Chain N, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|O Chain O, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|P Chain P, Human Nicotinamide Riboside Kinase (Nrk1)
Length = 199
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEERI 138
+ F +GI G +GKT L L K L + + ++ D F K + E +NG L + +
Sbjct: 2 KTFIIGISGVTNSGKTTLAKNLQKHLPN---CSVISQDDFFKPESEIETDKNGFLQYDVL 58
Query: 139 RAV 141
A+
Sbjct: 59 EAL 61
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIR 139
+ F +GI G +GKT L AL + L ++ +L + D + K+ G + EER+R
Sbjct: 5 KPFVIGIAGGTASGKTTLAQALARTLGERVAL--LPMDHYYKDLGHLPL------EERLR 56
Query: 140 A 140
Sbjct: 57 V 57
>pdb|1OAO|C Chain C, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|D Chain D, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|M Chain M, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|N Chain N, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|O Chain O, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|P Chain P, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|M Chain M, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|N Chain N, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|O Chain O, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|P Chain P, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 729
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAA 185
A+ET G I+ D+ IN GP E ++ K D+ + E GG+ A
Sbjct: 305 AMETRGIKLTKIKLDLPINFGPAFEGESIRKGDMYV-EMGGNRTPA 349
>pdb|3I04|M Chain M, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|N Chain N, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|O Chain O, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|P Chain P, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 728
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAA 185
A+ET G I+ D+ IN GP E ++ K D+ + E GG+ A
Sbjct: 304 AMETRGIKLTKIKLDLPINFGPAFEGESIRKGDMYV-EMGGNRTPA 348
>pdb|1MJG|M Chain M, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|N Chain N, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|O Chain O, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|P Chain P, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
Length = 729
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAA 185
A+ET G I+ D+ IN GP E ++ K D+ + E GG+ A
Sbjct: 305 AMETRGIKLTKIKLDLPINFGPAFEGESIRKGDMYV-EMGGNRTPA 349
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 84 VGIGGPVGTGKTALMLALCKFLRDKYSLA-AVTNDIFTKE--DGEFLMRN 130
V + GP GTGKTAL LA+ + L K V +++++ E E L N
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXEN 129
>pdb|3PFO|A Chain A, Crystal Structure Of A Putative Acetylornithine
Deacetylase (Rpa2325) From Rhodopseudomonas Palustris
Cga009 At 1.90 A Resolution
pdb|3PFO|B Chain B, Crystal Structure Of A Putative Acetylornithine
Deacetylase (Rpa2325) From Rhodopseudomonas Palustris
Cga009 At 1.90 A Resolution
Length = 433
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 113 AVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD 172
A + + + D + G P+E R +E C A D ++ P E + + F+AD
Sbjct: 286 ASSTAAWCELDCRLGLLTGDTPQEAXRGIEK--CLADAQATDSFLSENPAELVWSGFQAD 343
Query: 173 LLLCESGG 180
+CE GG
Sbjct: 344 PAVCEPGG 351
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 10/145 (6%)
Query: 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE---DGEFLMRNGALPEER 137
+ V G G+GKT L ++L D Y +A V D KE + +R EE
Sbjct: 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEI 73
Query: 138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIY 197
+R G P+ AI E + L E N + +L E D + + ++ ++ +
Sbjct: 74 MRE---GYGPNGAIVE----SYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFH 126
Query: 198 IIDVSGGDKIPRKGGPGITQADLLQ 222
V + +P I+ ++L+
Sbjct: 127 EFGVRLMENLPYPLVVYISDPEILK 151
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 26 EKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPI 59
++N G+ S +G DG VY H A H+ +
Sbjct: 384 KENKGEERLRSTIGVDGSVYKKHPHFAKRLHKTV 417
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,663,790
Number of Sequences: 62578
Number of extensions: 283746
Number of successful extensions: 728
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 24
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)