Query 027509
Match_columns 222
No_of_seqs 252 out of 2157
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 100.0 3.4E-35 7.4E-40 256.6 11.8 144 68-211 14-175 (258)
2 COG1126 GlnQ ABC-type polar am 100.0 2.2E-34 4.7E-39 244.6 12.1 139 70-208 16-169 (240)
3 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.2E-33 4.7E-38 244.5 12.0 141 65-209 14-174 (254)
4 COG1136 SalX ABC-type antimicr 100.0 1.4E-32 3E-37 236.2 12.4 138 69-206 18-173 (226)
5 COG1116 TauB ABC-type nitrate/ 100.0 1.4E-32 3E-37 237.7 12.0 133 69-206 16-161 (248)
6 COG1125 OpuBA ABC-type proline 100.0 3.3E-32 7.2E-37 236.2 11.1 139 68-208 13-168 (309)
7 COG1135 AbcC ABC-type metal io 100.0 6.2E-32 1.3E-36 239.6 12.0 140 69-208 19-174 (339)
8 COG3638 ABC-type phosphate/pho 100.0 1.7E-32 3.6E-37 235.5 7.7 157 64-220 12-193 (258)
9 COG2884 FtsE Predicted ATPase 100.0 9E-32 2E-36 224.8 11.5 145 64-208 10-170 (223)
10 COG3839 MalK ABC-type sugar tr 100.0 2E-32 4.2E-37 247.3 7.8 145 71-217 18-176 (338)
11 COG3842 PotA ABC-type spermidi 100.0 2.6E-32 5.6E-37 247.7 6.0 149 68-218 17-180 (352)
12 COG1131 CcmA ABC-type multidru 100.0 9.3E-31 2E-35 233.0 11.6 140 68-208 17-170 (293)
13 COG1122 CbiO ABC-type cobalt t 100.0 3.4E-31 7.4E-36 229.4 7.2 153 65-217 13-181 (235)
14 COG1127 Ttg2A ABC-type transpo 100.0 1.7E-30 3.7E-35 223.7 11.2 140 68-207 20-178 (263)
15 TIGR01166 cbiO cobalt transpor 100.0 4E-30 8.6E-35 213.7 13.0 141 69-209 5-162 (190)
16 cd03261 ABC_Org_Solvent_Resist 100.0 3E-30 6.4E-35 221.1 11.7 142 70-211 14-173 (235)
17 COG1118 CysA ABC-type sulfate/ 100.0 3.2E-30 7E-35 228.4 12.2 137 70-206 16-168 (345)
18 cd03225 ABC_cobalt_CbiO_domain 100.0 4E-30 8.7E-35 216.5 11.8 141 70-210 15-170 (211)
19 TIGR02314 ABC_MetN D-methionin 100.0 5.3E-30 1.1E-34 232.8 12.5 141 70-210 19-176 (343)
20 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.3E-30 9.2E-35 217.3 11.1 142 69-210 17-176 (218)
21 PRK11650 ugpC glycerol-3-phosp 100.0 1.4E-30 3.1E-35 237.5 8.8 143 69-213 17-173 (356)
22 TIGR00960 3a0501s02 Type II (G 100.0 3.7E-30 8.1E-35 217.6 10.5 141 70-210 17-174 (216)
23 cd03259 ABC_Carb_Solutes_like 100.0 7.9E-30 1.7E-34 215.2 11.2 140 69-210 13-166 (213)
24 TIGR02673 FtsE cell division A 100.0 1.1E-29 2.4E-34 214.3 11.9 142 69-210 15-173 (214)
25 COG1124 DppF ABC-type dipeptid 100.0 1.1E-29 2.3E-34 218.9 11.7 135 70-205 21-171 (252)
26 TIGR01186 proV glycine betaine 100.0 1.3E-29 2.8E-34 231.8 12.9 140 69-208 6-163 (363)
27 TIGR01188 drrA daunorubicin re 100.0 1.1E-29 2.3E-34 226.3 11.9 141 69-210 6-160 (302)
28 PRK09536 btuD corrinoid ABC tr 100.0 1.1E-29 2.3E-34 235.1 12.1 143 69-211 16-176 (402)
29 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-29 2.2E-34 213.7 10.8 136 69-210 13-162 (205)
30 cd03256 ABC_PhnC_transporter A 100.0 2.2E-29 4.7E-34 215.8 12.7 142 69-210 14-180 (241)
31 PRK13537 nodulation ABC transp 100.0 1.3E-29 2.8E-34 226.6 11.6 141 69-210 20-174 (306)
32 cd03292 ABC_FtsE_transporter F 100.0 1.5E-29 3.3E-34 213.2 11.1 141 70-210 15-172 (214)
33 TIGR02315 ABC_phnC phosphonate 100.0 2.9E-29 6.3E-34 215.5 13.1 141 69-209 15-180 (243)
34 COG0410 LivF ABC-type branched 100.0 1.3E-29 2.9E-34 216.9 10.7 136 69-204 16-165 (237)
35 cd03265 ABC_DrrA DrrA is the A 100.0 1.6E-29 3.4E-34 214.6 11.1 140 70-210 14-167 (220)
36 PRK13647 cbiO cobalt transport 100.0 2.9E-29 6.2E-34 220.7 13.0 142 69-210 18-174 (274)
37 COG4555 NatA ABC-type Na+ tran 100.0 5.2E-30 1.1E-34 216.1 7.6 144 64-208 10-167 (245)
38 PRK11629 lolD lipoprotein tran 100.0 2.4E-29 5.1E-34 215.4 11.7 141 70-210 23-181 (233)
39 TIGR02211 LolD_lipo_ex lipopro 100.0 2.1E-29 4.6E-34 213.5 11.3 141 70-210 19-177 (221)
40 cd03219 ABC_Mj1267_LivG_branch 100.0 2.7E-29 5.8E-34 214.9 11.7 141 70-210 14-179 (236)
41 PRK10908 cell division protein 100.0 3.4E-29 7.3E-34 212.8 12.2 140 70-209 16-172 (222)
42 PRK13650 cbiO cobalt transport 100.0 4.4E-29 9.6E-34 220.0 13.3 141 70-210 21-176 (279)
43 cd03263 ABC_subfamily_A The AB 100.0 1.9E-29 4.2E-34 213.6 10.4 141 69-210 15-169 (220)
44 cd03258 ABC_MetN_methionine_tr 100.0 3.5E-29 7.6E-34 214.0 12.0 141 70-210 19-176 (233)
45 PRK13637 cbiO cobalt transport 100.0 5.1E-29 1.1E-33 220.6 13.3 140 70-209 21-179 (287)
46 cd03262 ABC_HisP_GlnQ_permease 100.0 4E-29 8.6E-34 210.5 12.0 141 70-210 14-171 (213)
47 PRK11432 fbpC ferric transport 100.0 9.9E-30 2.2E-34 231.6 8.9 142 70-213 20-175 (351)
48 cd03266 ABC_NatA_sodium_export 100.0 2.2E-29 4.8E-34 213.0 10.4 140 70-210 19-172 (218)
49 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.6E-29 1E-33 214.8 12.0 141 70-210 15-171 (242)
50 PRK13644 cbiO cobalt transport 100.0 4.1E-29 8.9E-34 219.7 11.8 141 70-210 16-172 (274)
51 cd03235 ABC_Metallic_Cations A 100.0 4.1E-29 9E-34 210.8 11.4 136 70-210 13-168 (213)
52 TIGR03265 PhnT2 putative 2-ami 100.0 3.1E-29 6.7E-34 228.5 11.1 142 70-213 18-173 (353)
53 PRK11153 metN DL-methionine tr 100.0 4.2E-29 9.2E-34 226.6 11.5 142 69-210 18-176 (343)
54 PRK10851 sulfate/thiosulfate t 100.0 5.1E-29 1.1E-33 227.1 12.0 141 70-212 16-174 (353)
55 PRK10584 putative ABC transpor 100.0 6E-29 1.3E-33 211.9 11.6 141 70-210 24-182 (228)
56 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.2E-29 9.2E-34 212.0 10.6 136 70-210 18-167 (220)
57 cd03301 ABC_MalK_N The N-termi 100.0 5.4E-29 1.2E-33 209.9 10.9 139 70-210 14-166 (213)
58 cd03264 ABC_drug_resistance_li 100.0 4.7E-29 1E-33 210.2 10.6 139 70-210 14-166 (211)
59 cd03224 ABC_TM1139_LivF_branch 100.0 5.4E-29 1.2E-33 210.9 11.0 140 70-210 14-168 (222)
60 PRK13536 nodulation factor exp 100.0 7.7E-29 1.7E-33 224.9 12.7 140 69-209 54-207 (340)
61 COG1117 PstB ABC-type phosphat 100.0 6.2E-29 1.3E-33 211.1 11.2 142 67-208 18-182 (253)
62 PRK13635 cbiO cobalt transport 100.0 1.1E-28 2.5E-33 217.6 13.3 140 70-209 21-175 (279)
63 PRK13632 cbiO cobalt transport 100.0 7.9E-29 1.7E-33 217.3 12.2 141 69-209 22-177 (271)
64 cd03218 ABC_YhbG The ABC trans 100.0 9.8E-29 2.1E-33 210.8 12.2 141 70-210 14-169 (232)
65 TIGR03608 L_ocin_972_ABC putat 100.0 1.2E-28 2.7E-33 206.5 12.4 140 70-209 12-169 (206)
66 cd03257 ABC_NikE_OppD_transpor 100.0 9.8E-29 2.1E-33 209.9 11.6 141 70-210 19-181 (228)
67 PRK13646 cbiO cobalt transport 100.0 1.5E-28 3.2E-33 217.4 13.1 142 70-211 21-182 (286)
68 cd03268 ABC_BcrA_bacitracin_re 100.0 4.7E-29 1E-33 209.8 9.5 138 69-211 13-163 (208)
69 PRK13652 cbiO cobalt transport 100.0 1.5E-28 3.3E-33 216.3 13.1 141 69-209 17-172 (277)
70 COG4175 ProV ABC-type proline/ 100.0 7.3E-29 1.6E-33 220.7 11.0 141 71-211 43-200 (386)
71 TIGR01288 nodI ATP-binding ABC 100.0 1.3E-28 2.7E-33 219.5 12.6 140 70-210 18-171 (303)
72 PRK13634 cbiO cobalt transport 100.0 1.4E-28 3E-33 218.1 12.8 141 70-210 21-181 (290)
73 cd03296 ABC_CysA_sulfate_impor 100.0 1.2E-28 2.6E-33 211.8 11.9 139 70-210 16-172 (239)
74 cd03260 ABC_PstB_phosphate_tra 100.0 1.5E-28 3.2E-33 209.3 12.3 141 70-210 14-177 (227)
75 TIGR03522 GldA_ABC_ATP gliding 100.0 7.9E-29 1.7E-33 220.7 11.0 140 70-210 16-169 (301)
76 PRK13641 cbiO cobalt transport 100.0 1.5E-28 3.2E-33 217.5 12.6 140 70-209 21-180 (287)
77 COG1137 YhbG ABC-type (unclass 100.0 1.5E-29 3.2E-34 213.1 5.7 142 64-206 13-171 (243)
78 PRK09452 potA putrescine/sperm 100.0 9.8E-29 2.1E-33 226.9 11.6 142 70-213 28-183 (375)
79 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.7E-28 3.7E-33 215.1 12.4 141 69-209 37-195 (269)
80 PRK13636 cbiO cobalt transport 100.0 2E-28 4.2E-33 216.3 12.8 142 69-210 19-177 (283)
81 PRK10575 iron-hydroxamate tran 100.0 1.5E-28 3.3E-33 214.7 11.9 141 70-210 25-183 (265)
82 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.4E-28 3.1E-33 211.0 11.3 141 70-211 15-169 (236)
83 PRK11000 maltose/maltodextrin 100.0 1.2E-28 2.6E-33 225.7 11.5 140 70-211 17-170 (369)
84 PRK10253 iron-enterobactin tra 100.0 1.9E-28 4.2E-33 214.0 12.3 140 70-209 21-178 (265)
85 cd03269 ABC_putative_ATPase Th 100.0 1E-28 2.2E-33 208.1 9.9 137 70-210 14-164 (210)
86 COG0411 LivG ABC-type branched 100.0 5.1E-29 1.1E-33 214.7 8.0 136 71-206 19-181 (250)
87 PRK15079 oligopeptide ABC tran 100.0 1.9E-28 4.2E-33 221.5 12.2 141 69-209 34-196 (331)
88 PRK11264 putative amino-acid A 100.0 2.7E-28 6E-33 210.5 12.4 142 70-211 17-181 (250)
89 cd03298 ABC_ThiQ_thiamine_tran 100.0 3E-28 6.5E-33 205.3 12.3 135 74-210 16-164 (211)
90 PRK11607 potG putrescine trans 100.0 1.6E-28 3.4E-33 225.7 11.4 142 70-213 33-188 (377)
91 PRK09493 glnQ glutamine ABC tr 100.0 2.2E-28 4.8E-33 210.1 11.6 141 70-210 15-172 (240)
92 PRK13638 cbiO cobalt transport 100.0 4.7E-28 1E-32 212.2 13.8 142 69-210 14-172 (271)
93 PRK10247 putative ABC transpor 100.0 2.3E-28 4.9E-33 208.7 11.4 141 69-210 20-173 (225)
94 PRK13648 cbiO cobalt transport 100.0 5.2E-28 1.1E-32 211.7 13.8 141 70-210 23-178 (269)
95 PRK14250 phosphate ABC transpo 100.0 2.9E-28 6.3E-33 210.0 12.0 138 70-210 17-167 (241)
96 PRK11231 fecE iron-dicitrate t 100.0 2.3E-28 4.9E-33 212.2 11.4 141 70-210 16-174 (255)
97 PRK13643 cbiO cobalt transport 100.0 4.1E-28 8.9E-33 214.9 13.1 140 70-209 20-179 (288)
98 PRK10895 lipopolysaccharide AB 100.0 3.2E-28 7E-33 209.2 12.1 141 70-210 17-173 (241)
99 PRK10070 glycine betaine trans 100.0 3.7E-28 8E-33 224.7 12.8 141 70-210 42-200 (400)
100 PRK13651 cobalt transporter AT 100.0 4.4E-28 9.5E-33 216.8 12.9 140 70-209 21-200 (305)
101 PRK13633 cobalt transporter AT 100.0 3.9E-28 8.4E-33 214.0 12.3 142 70-211 24-181 (280)
102 PRK11831 putative ABC transpor 100.0 3.6E-28 7.9E-33 212.9 12.0 141 70-210 21-179 (269)
103 PRK13639 cbiO cobalt transport 100.0 4.9E-28 1.1E-32 212.9 12.8 141 70-210 16-173 (275)
104 COG3840 ThiQ ABC-type thiamine 100.0 1.9E-28 4.2E-33 204.0 9.6 132 75-208 18-162 (231)
105 TIGR03873 F420-0_ABC_ATP propo 100.0 3.8E-28 8.2E-33 210.9 11.8 141 70-210 15-173 (256)
106 TIGR03258 PhnT 2-aminoethylpho 100.0 2.9E-28 6.2E-33 222.9 11.3 141 70-212 19-175 (362)
107 cd03231 ABC_CcmA_heme_exporter 100.0 5.1E-28 1.1E-32 203.3 11.8 135 70-210 14-161 (201)
108 PRK13631 cbiO cobalt transport 100.0 6.6E-28 1.4E-32 217.0 13.4 140 70-209 40-211 (320)
109 PRK13548 hmuV hemin importer A 100.0 6E-28 1.3E-32 210.3 12.6 141 70-210 16-176 (258)
110 TIGR03411 urea_trans_UrtD urea 100.0 8.8E-28 1.9E-32 206.4 13.4 140 70-209 16-178 (242)
111 PRK11308 dppF dipeptide transp 100.0 6.1E-28 1.3E-32 217.8 13.0 140 70-209 29-189 (327)
112 PRK13538 cytochrome c biogenes 100.0 3.2E-28 6.9E-33 204.8 10.2 137 70-209 15-164 (204)
113 PRK14247 phosphate ABC transpo 100.0 6.9E-28 1.5E-32 208.2 12.5 141 70-210 17-182 (250)
114 PRK13642 cbiO cobalt transport 100.0 7.9E-28 1.7E-32 211.7 13.0 142 70-211 21-177 (277)
115 PRK13640 cbiO cobalt transport 100.0 1E-27 2.2E-32 211.7 13.6 141 70-210 21-179 (282)
116 PRK11124 artP arginine transpo 100.0 7.6E-28 1.7E-32 207.0 12.4 141 70-210 16-177 (242)
117 PRK13649 cbiO cobalt transport 100.0 8E-28 1.7E-32 211.5 12.7 140 70-209 21-180 (280)
118 PRK11300 livG leucine/isoleuci 100.0 9.1E-28 2E-32 207.8 12.8 142 69-210 18-189 (255)
119 TIGR02982 heterocyst_DevA ABC 100.0 8.2E-28 1.8E-32 204.3 12.0 142 69-210 18-177 (220)
120 TIGR01189 ccmA heme ABC export 99.9 4.9E-28 1.1E-32 202.6 10.1 137 70-210 14-163 (198)
121 PRK15112 antimicrobial peptide 99.9 1E-27 2.3E-32 209.8 12.6 141 70-210 27-185 (267)
122 cd03245 ABCC_bacteriocin_expor 99.9 7.8E-28 1.7E-32 203.8 11.4 138 69-211 17-177 (220)
123 TIGR00972 3a0107s01c2 phosphat 99.9 1.2E-27 2.6E-32 206.5 12.8 140 70-209 15-179 (247)
124 TIGR01277 thiQ thiamine ABC tr 99.9 9.9E-28 2.1E-32 202.8 12.0 137 72-210 14-164 (213)
125 PRK13645 cbiO cobalt transport 99.9 9.9E-28 2.1E-32 212.1 12.5 141 70-210 25-186 (289)
126 TIGR03415 ABC_choXWV_ATP choli 99.9 8.9E-28 1.9E-32 221.0 12.5 140 70-209 38-199 (382)
127 PRK11614 livF leucine/isoleuci 99.9 7E-28 1.5E-32 206.6 10.8 141 69-210 18-173 (237)
128 TIGR02769 nickel_nikE nickel i 99.9 1.7E-27 3.7E-32 208.1 13.4 139 70-208 25-184 (265)
129 TIGR03410 urea_trans_UrtE urea 99.9 6.7E-28 1.4E-32 205.7 10.5 140 70-211 14-168 (230)
130 TIGR03005 ectoine_ehuA ectoine 99.9 9.9E-28 2.1E-32 207.6 11.7 141 70-210 14-182 (252)
131 PRK10771 thiQ thiamine transpo 99.9 1.2E-27 2.6E-32 204.8 11.9 135 74-210 17-165 (232)
132 cd03254 ABCC_Glucan_exporter_l 99.9 9.6E-28 2.1E-32 204.4 11.2 140 69-210 16-175 (229)
133 PRK13540 cytochrome c biogenes 99.9 1.1E-27 2.4E-32 200.9 11.4 136 70-210 15-163 (200)
134 PF00005 ABC_tran: ABC transpo 99.9 2E-28 4.3E-33 192.2 6.4 126 72-203 1-136 (137)
135 cd03297 ABC_ModC_molybdenum_tr 99.9 1.6E-27 3.6E-32 201.4 12.5 135 74-210 16-167 (214)
136 TIGR02142 modC_ABC molybdenum 99.9 7.7E-28 1.7E-32 219.1 11.2 136 74-210 15-167 (354)
137 PRK11248 tauB taurine transpor 99.9 8.9E-28 1.9E-32 209.2 11.1 136 70-210 15-164 (255)
138 TIGR01184 ntrCD nitrate transp 99.9 1.3E-27 2.8E-32 204.8 11.9 133 73-210 2-150 (230)
139 TIGR02868 CydC thiol reductant 99.9 1.3E-27 2.9E-32 226.5 13.0 136 65-206 344-502 (529)
140 PRK11022 dppD dipeptide transp 99.9 1.2E-27 2.6E-32 215.8 12.1 139 70-208 21-187 (326)
141 PRK03695 vitamin B12-transport 99.9 1.7E-27 3.8E-32 206.3 12.6 140 71-210 11-169 (248)
142 cd03251 ABCC_MsbA MsbA is an e 99.9 1.6E-27 3.5E-32 203.6 11.9 139 70-209 16-173 (234)
143 cd03248 ABCC_TAP TAP, the Tran 99.9 1.6E-27 3.4E-32 202.9 11.6 140 70-210 28-186 (226)
144 cd03252 ABCC_Hemolysin The ABC 99.9 2.4E-27 5.2E-32 203.1 12.8 141 69-210 15-174 (237)
145 PRK14267 phosphate ABC transpo 99.9 1.5E-27 3.3E-32 206.4 11.6 142 69-210 17-185 (253)
146 PRK14273 phosphate ABC transpo 99.9 1.9E-27 4.2E-32 206.0 12.0 143 69-211 20-187 (254)
147 PRK10762 D-ribose transporter 99.9 1.7E-27 3.7E-32 225.0 12.6 142 69-210 17-177 (501)
148 PRK11247 ssuB aliphatic sulfon 99.9 1.5E-27 3.4E-32 208.4 11.3 132 69-210 25-169 (257)
149 cd03214 ABC_Iron-Siderophores_ 99.9 6.4E-28 1.4E-32 199.5 8.3 116 70-210 13-133 (180)
150 PRK11144 modC molybdate transp 99.9 1.4E-27 3.1E-32 217.3 11.2 133 74-211 16-165 (352)
151 TIGR02770 nickel_nikD nickel i 99.9 1.7E-27 3.6E-32 203.8 10.9 137 72-210 2-161 (230)
152 PRK15056 manganese/iron transp 99.9 1.4E-27 3E-32 209.5 10.5 139 69-210 20-178 (272)
153 PRK14242 phosphate transporter 99.9 2.3E-27 4.9E-32 205.3 11.0 141 70-210 20-185 (253)
154 PRK11701 phnK phosphonate C-P 99.9 3.9E-27 8.4E-32 204.8 12.5 141 70-210 20-187 (258)
155 COG4525 TauB ABC-type taurine 99.9 2.8E-27 6.1E-32 199.1 11.1 133 69-206 18-163 (259)
156 TIGR01978 sufC FeS assembly AT 99.9 3.5E-27 7.5E-32 202.4 11.9 141 70-210 14-180 (243)
157 PRK14269 phosphate ABC transpo 99.9 4.3E-27 9.4E-32 203.1 12.6 140 70-209 16-177 (246)
158 PRK13549 xylose transporter AT 99.9 2.9E-27 6.3E-32 223.7 12.5 142 69-210 18-179 (506)
159 COG4181 Predicted ABC-type tra 99.9 3.4E-27 7.4E-32 195.1 11.2 138 69-206 23-177 (228)
160 PRK10619 histidine/lysine/argi 99.9 3.2E-27 6.9E-32 205.2 11.6 141 70-210 19-188 (257)
161 PRK09700 D-allose transporter 99.9 3.2E-27 7E-32 223.5 12.6 141 70-210 19-181 (510)
162 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 6.2E-27 1.3E-31 200.7 12.9 138 70-208 17-173 (238)
163 PRK09473 oppD oligopeptide tra 99.9 4.1E-27 8.8E-32 212.7 12.3 141 70-210 30-197 (330)
164 cd03267 ABC_NatA_like Similar 99.9 2.7E-27 5.9E-32 203.6 10.5 139 70-209 35-188 (236)
165 TIGR02324 CP_lyasePhnL phospho 99.9 4.9E-27 1.1E-31 199.6 11.9 141 70-210 22-185 (224)
166 cd03253 ABCC_ATM1_transporter 99.9 4.6E-27 1E-31 201.0 11.7 140 69-209 14-172 (236)
167 PRK10744 pstB phosphate transp 99.9 4.1E-27 9E-32 205.0 11.6 141 70-210 27-192 (260)
168 PRK14259 phosphate ABC transpo 99.9 7.3E-27 1.6E-31 204.8 13.2 140 70-209 27-189 (269)
169 PRK14235 phosphate transporter 99.9 3.9E-27 8.5E-32 206.1 11.2 141 69-209 32-198 (267)
170 PRK11174 cysteine/glutathione 99.9 4.7E-27 1E-31 225.3 12.7 135 68-206 362-517 (588)
171 cd03299 ABC_ModC_like Archeal 99.9 3.6E-27 7.9E-32 202.5 10.6 138 71-210 14-165 (235)
172 PRK15093 antimicrobial peptide 99.9 5.8E-27 1.3E-31 211.5 12.3 141 70-210 21-194 (330)
173 cd03300 ABC_PotA_N PotA is an 99.9 5.1E-27 1.1E-31 201.1 11.3 140 70-211 14-167 (232)
174 COG4148 ModC ABC-type molybdat 99.9 1.3E-27 2.7E-32 210.0 7.6 139 73-216 15-170 (352)
175 PRK09984 phosphonate/organopho 99.9 8.8E-27 1.9E-31 202.9 12.9 141 69-209 17-187 (262)
176 PRK14268 phosphate ABC transpo 99.9 4.8E-27 1E-31 204.3 11.1 141 70-210 26-190 (258)
177 PRK15439 autoinducer 2 ABC tra 99.9 6E-27 1.3E-31 222.0 12.6 139 69-210 24-176 (510)
178 cd03244 ABCC_MRP_domain2 Domai 99.9 5E-27 1.1E-31 199.0 10.8 134 70-209 18-174 (221)
179 cd03234 ABCG_White The White s 99.9 5.7E-27 1.2E-31 199.8 11.1 138 69-209 20-178 (226)
180 TIGR02323 CP_lyasePhnK phospho 99.9 5.9E-27 1.3E-31 202.7 11.3 141 70-210 17-184 (253)
181 PRK13543 cytochrome c biogenes 99.9 4.4E-27 9.5E-32 199.4 10.2 136 70-210 25-173 (214)
182 PRK14241 phosphate transporter 99.9 6.2E-27 1.3E-31 203.5 11.2 141 70-210 18-184 (258)
183 PRK13539 cytochrome c biogenes 99.9 4.2E-27 9.1E-32 198.6 9.8 136 70-211 16-164 (207)
184 PRK09700 D-allose transporter 99.9 1.1E-26 2.3E-31 219.9 13.6 140 71-210 278-445 (510)
185 COG2274 SunT ABC-type bacterio 99.9 6.3E-27 1.4E-31 229.2 12.3 139 65-206 481-641 (709)
186 PRK10982 galactose/methyl gala 99.9 7.9E-27 1.7E-31 219.9 12.5 141 70-210 12-170 (491)
187 PRK13547 hmuV hemin importer A 99.9 1.1E-26 2.4E-31 204.6 12.5 141 70-210 15-190 (272)
188 TIGR00968 3a0106s01 sulfate AB 99.9 8.2E-27 1.8E-31 200.6 11.2 139 70-210 14-166 (237)
189 PRK10938 putative molybdenum t 99.9 9.7E-27 2.1E-31 219.1 12.2 140 70-209 17-170 (490)
190 PRK14244 phosphate ABC transpo 99.9 4.2E-27 9.1E-32 203.6 8.8 143 69-211 18-186 (251)
191 PRK14263 phosphate ABC transpo 99.9 1E-26 2.2E-31 203.2 11.3 142 68-209 20-184 (261)
192 PRK10419 nikE nickel transport 99.9 2.1E-26 4.5E-31 201.8 13.1 141 69-209 25-186 (268)
193 KOG0058 Peptide exporter, ABC 99.9 1.4E-26 3.1E-31 222.9 13.0 138 65-205 475-634 (716)
194 cd03290 ABCC_SUR1_N The SUR do 99.9 1.4E-26 3E-31 196.3 11.2 136 69-210 14-176 (218)
195 PRK14240 phosphate transporter 99.9 1.6E-26 3.4E-31 199.7 11.8 141 70-210 17-182 (250)
196 PRK14274 phosphate ABC transpo 99.9 1.3E-26 2.8E-31 201.6 11.3 141 70-210 26-191 (259)
197 PRK11288 araG L-arabinose tran 99.9 2.4E-26 5.1E-31 217.3 13.9 141 70-210 18-176 (501)
198 PRK14256 phosphate ABC transpo 99.9 1.9E-26 4.2E-31 199.6 12.0 141 70-210 18-184 (252)
199 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.6E-26 3.5E-31 225.6 12.9 134 68-207 465-621 (686)
200 COG4559 ABC-type hemin transpo 99.9 2.2E-26 4.8E-31 195.5 11.8 139 69-207 14-174 (259)
201 PRK11176 lipid transporter ATP 99.9 2.6E-26 5.5E-31 219.8 13.8 136 69-208 356-514 (582)
202 TIGR03771 anch_rpt_ABC anchore 99.9 3E-26 6.6E-31 195.5 12.7 128 77-209 1-148 (223)
203 PRK10261 glutathione transport 99.9 1.7E-26 3.8E-31 223.8 12.6 141 70-210 338-499 (623)
204 PRK14248 phosphate ABC transpo 99.9 1.9E-26 4.1E-31 201.6 11.6 142 69-210 34-200 (268)
205 PRK14254 phosphate ABC transpo 99.9 1.4E-26 3.1E-31 204.9 10.7 142 69-210 52-216 (285)
206 TIGR03740 galliderm_ABC gallid 99.9 8.3E-27 1.8E-31 198.3 8.8 134 70-210 14-160 (223)
207 TIGR01193 bacteriocin_ABC ABC- 99.9 1.8E-26 4E-31 225.9 12.4 140 65-208 483-645 (708)
208 PRK10418 nikD nickel transport 99.9 1.6E-26 3.5E-31 200.6 10.5 139 69-210 16-176 (254)
209 PRK14243 phosphate transporter 99.9 2.9E-26 6.2E-31 200.4 12.1 141 70-210 24-187 (264)
210 COG0444 DppD ABC-type dipeptid 99.9 1.5E-26 3.3E-31 206.2 10.5 139 70-208 19-187 (316)
211 PRK14270 phosphate ABC transpo 99.9 2.8E-26 6.1E-31 198.4 11.7 140 70-209 18-182 (251)
212 PRK13549 xylose transporter AT 99.9 3.4E-26 7.5E-31 216.4 13.4 143 69-211 275-442 (506)
213 TIGR02633 xylG D-xylose ABC tr 99.9 4.1E-26 9E-31 215.3 13.8 140 70-209 15-176 (500)
214 PRK10790 putative multidrug tr 99.9 3.5E-26 7.6E-31 219.6 13.3 133 69-207 354-509 (592)
215 COG4604 CeuD ABC-type enteroch 99.9 7.1E-27 1.5E-31 196.8 7.4 141 68-208 13-169 (252)
216 COG1132 MdlB ABC-type multidru 99.9 4E-26 8.6E-31 218.4 13.5 139 65-206 338-497 (567)
217 PRK14262 phosphate ABC transpo 99.9 3.8E-26 8.2E-31 197.3 12.1 141 70-210 17-182 (250)
218 PRK14271 phosphate ABC transpo 99.9 3.3E-26 7.2E-31 201.6 11.6 142 69-210 34-199 (276)
219 PRK10762 D-ribose transporter 99.9 4.1E-26 9E-31 215.6 13.1 140 71-210 267-431 (501)
220 PRK13541 cytochrome c biogenes 99.9 1.6E-26 3.4E-31 193.2 9.1 131 71-210 16-159 (195)
221 PRK14261 phosphate ABC transpo 99.9 3.2E-26 6.9E-31 198.3 11.2 141 70-210 20-185 (253)
222 PRK14251 phosphate ABC transpo 99.9 3.8E-26 8.2E-31 197.4 11.6 142 69-210 17-183 (251)
223 TIGR02857 CydD thiol reductant 99.9 4.2E-26 9.1E-31 216.3 13.0 134 69-207 335-491 (529)
224 PRK15134 microcin C ABC transp 99.9 2.6E-26 5.7E-31 218.2 11.6 142 69-210 299-461 (529)
225 PRK14253 phosphate ABC transpo 99.9 6.3E-26 1.4E-30 195.8 12.9 142 69-210 16-181 (249)
226 COG3845 ABC-type uncharacteriz 99.9 4.3E-26 9.4E-31 212.0 12.4 141 69-209 17-174 (501)
227 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.1E-26 9E-31 223.4 12.9 134 69-207 492-648 (710)
228 PRK14245 phosphate ABC transpo 99.9 3.5E-26 7.6E-31 197.7 11.0 141 70-210 17-182 (250)
229 PRK14260 phosphate ABC transpo 99.9 3.3E-26 7.1E-31 199.2 10.8 141 70-210 21-186 (259)
230 cd03369 ABCC_NFT1 Domain 2 of 99.9 6E-26 1.3E-30 191.0 12.0 127 70-209 22-160 (207)
231 PRK14238 phosphate transporter 99.9 3.6E-26 7.7E-31 200.7 11.1 142 70-211 38-204 (271)
232 PRK11288 araG L-arabinose tran 99.9 4.8E-26 1.1E-30 215.1 12.8 141 71-211 268-433 (501)
233 COG1119 ModF ABC-type molybden 99.9 3.3E-26 7.2E-31 197.6 10.6 145 66-210 41-207 (257)
234 PRK14246 phosphate ABC transpo 99.9 8.1E-26 1.8E-30 197.1 13.1 141 69-209 23-188 (257)
235 PRK14265 phosphate ABC transpo 99.9 7.2E-26 1.6E-30 199.1 12.9 141 70-210 34-197 (274)
236 PRK11160 cysteine/glutathione 99.9 6.4E-26 1.4E-30 217.7 13.6 134 69-207 353-508 (574)
237 PRK14272 phosphate ABC transpo 99.9 5.2E-26 1.1E-30 196.4 11.7 141 70-210 18-184 (252)
238 PRK14239 phosphate transporter 99.9 5.5E-26 1.2E-30 196.3 11.7 141 70-210 19-184 (252)
239 PRK14237 phosphate transporter 99.9 9.5E-26 2.1E-30 197.4 13.2 141 69-209 33-198 (267)
240 PRK14249 phosphate ABC transpo 99.9 6.6E-26 1.4E-30 196.1 12.0 141 70-210 18-183 (251)
241 PRK15134 microcin C ABC transp 99.9 4.2E-26 9.1E-31 216.8 11.7 141 70-210 23-192 (529)
242 cd03233 ABC_PDR_domain1 The pl 99.9 5E-26 1.1E-30 191.6 10.6 126 69-209 20-153 (202)
243 TIGR02633 xylG D-xylose ABC tr 99.9 8.4E-26 1.8E-30 213.2 13.3 143 69-211 273-440 (500)
244 PRK09580 sufC cysteine desulfu 99.9 2.1E-25 4.5E-30 192.1 14.3 140 70-209 15-180 (248)
245 PRK14275 phosphate ABC transpo 99.9 6.6E-26 1.4E-30 200.6 11.5 141 70-210 53-218 (286)
246 CHL00131 ycf16 sulfate ABC tra 99.9 1.4E-25 3E-30 193.8 13.2 141 70-210 21-187 (252)
247 COG1123 ATPase components of v 99.9 6.1E-26 1.3E-30 214.7 11.8 140 69-208 304-462 (539)
248 TIGR02203 MsbA_lipidA lipid A 99.9 7.2E-26 1.6E-30 216.0 12.3 135 69-207 345-502 (571)
249 PRK15439 autoinducer 2 ABC tra 99.9 1.2E-25 2.5E-30 213.2 13.5 140 71-210 278-439 (510)
250 PRK14266 phosphate ABC transpo 99.9 8.2E-26 1.8E-30 195.2 11.3 140 70-209 17-181 (250)
251 cd03215 ABC_Carb_Monos_II This 99.9 9.2E-26 2E-30 186.8 11.1 121 71-210 15-140 (182)
252 cd03230 ABC_DR_subfamily_A Thi 99.9 6.2E-26 1.3E-30 186.5 10.0 114 70-210 14-131 (173)
253 COG4598 HisP ABC-type histidin 99.9 4E-26 8.7E-31 190.3 8.9 139 71-209 21-186 (256)
254 COG4152 ABC-type uncharacteriz 99.9 4.4E-26 9.6E-31 197.1 9.5 132 71-206 17-162 (300)
255 TIGR00958 3a01208 Conjugate Tr 99.9 7.7E-26 1.7E-30 222.1 12.4 134 69-207 494-650 (711)
256 PRK13657 cyclic beta-1,2-gluca 99.9 1.2E-25 2.5E-30 216.0 13.2 139 65-207 344-504 (588)
257 cd03288 ABCC_SUR2 The SUR doma 99.9 1.3E-25 2.8E-30 195.4 11.9 140 70-210 35-192 (257)
258 cd03247 ABCC_cytochrome_bd The 99.9 3.7E-26 8.1E-31 188.4 8.0 114 70-210 16-134 (178)
259 COG1129 MglA ABC-type sugar tr 99.9 1.8E-25 4E-30 210.1 13.6 137 69-205 21-175 (500)
260 TIGR03269 met_CoM_red_A2 methy 99.9 8.8E-26 1.9E-30 214.1 11.6 143 69-211 297-464 (520)
261 TIGR03375 type_I_sec_LssB type 99.9 1.3E-25 2.9E-30 219.4 13.2 135 68-207 477-634 (694)
262 cd03246 ABCC_Protease_Secretio 99.9 1.1E-25 2.3E-30 185.1 10.5 113 70-210 16-132 (173)
263 cd03250 ABCC_MRP_domain1 Domai 99.9 1.6E-25 3.5E-30 188.0 11.8 124 70-209 19-162 (204)
264 PRK10522 multidrug transporter 99.9 1.9E-25 4.2E-30 213.1 13.9 141 65-207 332-482 (547)
265 PRK14236 phosphate transporter 99.9 1.8E-25 4E-30 196.1 12.6 140 70-209 39-203 (272)
266 PRK10261 glutathione transport 99.9 1.1E-25 2.5E-30 218.1 12.3 141 69-209 29-203 (623)
267 PRK14255 phosphate ABC transpo 99.9 1.1E-25 2.5E-30 194.5 10.9 141 70-210 19-184 (252)
268 COG4619 ABC-type uncharacteriz 99.9 2.5E-26 5.4E-31 189.5 6.4 148 63-211 10-170 (223)
269 cd03229 ABC_Class3 This class 99.9 1.2E-25 2.7E-30 185.5 10.4 116 70-209 14-135 (178)
270 cd03228 ABCC_MRP_Like The MRP 99.9 1.2E-25 2.5E-30 184.5 10.1 113 70-210 16-132 (171)
271 cd03289 ABCC_CFTR2 The CFTR su 99.9 2E-25 4.4E-30 197.1 12.1 134 69-208 17-172 (275)
272 TIGR03269 met_CoM_red_A2 methy 99.9 9.2E-26 2E-30 214.0 10.6 142 69-210 13-204 (520)
273 PRK14264 phosphate ABC transpo 99.9 2.8E-25 6E-30 198.4 12.8 142 69-210 58-236 (305)
274 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.9E-25 4.2E-30 190.8 11.2 135 69-208 35-176 (224)
275 PRK09544 znuC high-affinity zi 99.9 5.2E-26 1.1E-30 198.0 7.5 127 70-210 18-156 (251)
276 PRK14258 phosphate ABC transpo 99.9 2.4E-25 5.2E-30 194.2 11.7 141 70-210 21-186 (261)
277 PRK10982 galactose/methyl gala 99.9 3.1E-25 6.6E-30 209.1 13.2 143 70-212 262-429 (491)
278 PRK10938 putative molybdenum t 99.9 2.7E-25 5.8E-30 209.3 12.6 141 70-210 274-437 (490)
279 KOG0055 Multidrug/pheromone ex 99.9 1.5E-25 3.2E-30 225.9 11.1 135 69-206 366-521 (1228)
280 KOG0057 Mitochondrial Fe/S clu 99.9 1.4E-25 3E-30 210.7 10.2 137 64-205 360-517 (591)
281 PRK14257 phosphate ABC transpo 99.9 3.7E-25 8E-30 200.0 12.6 140 69-208 95-259 (329)
282 TIGR01842 type_I_sec_PrtD type 99.9 7.3E-25 1.6E-29 208.9 15.2 140 69-209 331-489 (544)
283 COG4988 CydD ABC-type transpor 99.9 6.1E-25 1.3E-29 207.8 14.5 141 65-207 330-489 (559)
284 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.3E-25 5E-30 193.6 10.1 121 75-210 18-151 (246)
285 COG1123 ATPase components of v 99.9 5.2E-25 1.1E-29 208.4 13.1 140 69-208 22-188 (539)
286 PRK14252 phosphate ABC transpo 99.9 5.2E-25 1.1E-29 192.2 12.2 141 70-210 30-197 (265)
287 cd03216 ABC_Carb_Monos_I This 99.9 2.5E-25 5.4E-30 181.7 9.0 100 70-210 14-118 (163)
288 cd03213 ABCG_EPDR ABCG transpo 99.9 5.5E-25 1.2E-29 184.2 10.9 118 69-209 22-146 (194)
289 COG4172 ABC-type uncharacteriz 99.9 9E-25 2E-29 199.8 13.2 166 39-204 261-455 (534)
290 PRK10789 putative multidrug tr 99.9 7.1E-25 1.5E-29 210.2 13.1 139 69-209 328-486 (569)
291 TIGR02204 MsbA_rel ABC transpo 99.9 9.6E-25 2.1E-29 208.6 13.9 137 69-210 353-512 (576)
292 TIGR01194 cyc_pep_trnsptr cycl 99.9 9.9E-25 2.1E-29 208.8 13.9 137 70-207 356-503 (555)
293 cd03223 ABCD_peroxisomal_ALDP 99.9 4.5E-25 9.8E-30 180.7 9.8 109 69-210 14-127 (166)
294 TIGR01192 chvA glucan exporter 99.9 1.3E-24 2.8E-29 209.2 14.6 144 65-209 344-506 (585)
295 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.2E-24 2.5E-29 182.9 12.2 118 70-209 14-139 (200)
296 cd03236 ABC_RNaseL_inhibitor_d 99.9 1E-24 2.2E-29 190.6 11.6 135 70-208 15-173 (255)
297 TIGR01187 potA spermidine/putr 99.9 6.4E-25 1.4E-29 197.8 10.5 123 86-210 1-136 (325)
298 TIGR01846 type_I_sec_HlyB type 99.9 2.3E-24 4.9E-29 210.9 14.1 139 69-208 470-627 (694)
299 TIGR01257 rim_protein retinal- 99.9 7.6E-25 1.6E-29 232.2 11.1 141 69-210 1952-2106(2272)
300 PTZ00265 multidrug resistance 99.9 1.3E-24 2.9E-29 226.9 12.4 133 69-206 1181-1390(1466)
301 cd03232 ABC_PDR_domain2 The pl 99.9 1.8E-24 3.9E-29 180.7 10.5 118 69-210 20-144 (192)
302 TIGR01257 rim_protein retinal- 99.9 1.6E-24 3.5E-29 229.8 12.5 141 68-209 942-1096(2272)
303 COG4608 AppF ABC-type oligopep 99.9 1.6E-24 3.4E-29 189.6 9.7 110 70-207 27-142 (268)
304 PLN03211 ABC transporter G-25; 99.9 2.9E-24 6.2E-29 209.7 12.2 138 69-210 81-242 (659)
305 PRK10535 macrolide transporter 99.9 3.6E-24 7.8E-29 208.6 12.8 141 70-210 22-180 (648)
306 PRK13546 teichoic acids export 99.9 4.2E-24 9.1E-29 187.5 12.0 136 67-208 35-177 (264)
307 COG4167 SapF ABC-type antimicr 99.9 3.3E-24 7.2E-29 179.3 10.7 139 70-208 27-183 (267)
308 PRK11819 putative ABC transpor 99.9 4.5E-24 9.7E-29 204.4 11.2 130 69-210 20-199 (556)
309 KOG0055 Multidrug/pheromone ex 99.9 5.6E-24 1.2E-28 214.6 12.4 134 69-205 1003-1156(1228)
310 COG4618 ArpD ABC-type protease 99.9 7E-24 1.5E-28 198.0 11.9 134 68-204 348-501 (580)
311 PRK15064 ABC transporter ATP-b 99.9 8.7E-24 1.9E-28 201.0 12.3 127 69-210 332-474 (530)
312 PRK15064 ABC transporter ATP-b 99.9 5E-24 1.1E-28 202.7 10.6 131 69-210 14-191 (530)
313 TIGR00955 3a01204 The Eye Pigm 99.9 1E-23 2.3E-28 204.3 12.1 139 68-209 37-201 (617)
314 COG4161 ArtP ABC-type arginine 99.9 1E-23 2.2E-28 173.5 9.8 141 68-208 14-174 (242)
315 PRK11819 putative ABC transpor 99.9 8.8E-24 1.9E-28 202.3 10.9 129 70-210 338-481 (556)
316 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1E-23 2.2E-28 201.7 10.9 130 69-210 335-479 (552)
317 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.5E-23 3.2E-28 200.6 12.0 130 69-210 18-197 (552)
318 PTZ00265 multidrug resistance 99.9 1.2E-23 2.6E-28 219.7 12.3 138 70-207 399-612 (1466)
319 PLN03130 ABC transporter C fam 99.9 1.5E-23 3.2E-28 220.7 12.9 132 69-206 1252-1406(1622)
320 PLN03232 ABC transporter C fam 99.9 1.4E-23 2.9E-28 220.0 12.4 132 69-206 1249-1403(1495)
321 PRK15177 Vi polysaccharide exp 99.9 8.7E-24 1.9E-28 179.6 8.8 130 71-209 2-139 (213)
322 COG4586 ABC-type uncharacteriz 99.9 4.9E-24 1.1E-28 186.7 7.3 141 70-211 38-193 (325)
323 PRK13409 putative ATPase RIL; 99.9 1.2E-23 2.7E-28 203.0 10.7 123 72-211 355-490 (590)
324 COG0396 sufC Cysteine desulfur 99.9 4.8E-23 1E-27 176.6 12.5 138 69-207 17-177 (251)
325 cd03291 ABCC_CFTR1 The CFTR su 99.9 2.9E-23 6.4E-28 184.0 11.4 128 69-210 50-195 (282)
326 COG4987 CydC ABC-type transpor 99.9 3.3E-23 7.2E-28 194.5 12.1 136 68-208 350-508 (573)
327 PTZ00243 ABC transporter; Prov 99.9 2.5E-23 5.5E-28 218.5 12.6 134 65-204 1318-1475(1560)
328 PRK13409 putative ATPase RIL; 99.9 8.5E-24 1.8E-28 204.2 8.2 143 65-208 83-246 (590)
329 COG4133 CcmA ABC-type transpor 99.9 1.6E-23 3.5E-28 174.9 8.6 137 68-207 14-163 (209)
330 COG4107 PhnK ABC-type phosphon 99.9 6.5E-23 1.4E-27 170.5 12.0 137 71-207 21-184 (258)
331 COG4674 Uncharacterized ABC-ty 99.9 4.5E-24 9.7E-29 179.6 5.1 140 62-205 15-178 (249)
332 PRK11147 ABC transporter ATPas 99.9 2.4E-23 5.2E-28 202.3 10.7 130 69-210 332-476 (635)
333 PRK10636 putative ABC transpor 99.9 9.1E-24 2E-28 205.5 7.6 141 69-209 14-184 (638)
334 cd00267 ABC_ATPase ABC (ATP-bi 99.9 4.8E-23 1E-27 166.3 10.0 99 70-209 13-115 (157)
335 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 3.2E-23 6.8E-28 166.3 8.8 89 70-210 14-106 (144)
336 TIGR00957 MRP_assoc_pro multi 99.9 3.8E-23 8.3E-28 216.9 11.7 132 69-206 1299-1453(1522)
337 TIGR00954 3a01203 Peroxysomal 99.9 5.1E-23 1.1E-27 200.9 11.5 132 65-207 461-615 (659)
338 PLN03073 ABC transporter F fam 99.9 3.3E-23 7.2E-28 203.9 9.8 130 65-209 518-662 (718)
339 PRK13545 tagH teichoic acids e 99.9 3.8E-23 8.3E-28 196.3 9.8 134 70-209 38-178 (549)
340 PRK10636 putative ABC transpor 99.9 3E-23 6.6E-28 201.8 9.1 131 69-210 325-466 (638)
341 cd03222 ABC_RNaseL_inhibitor T 99.9 7E-23 1.5E-27 170.4 9.6 88 71-209 15-106 (177)
342 TIGR00956 3a01205 Pleiotropic 99.9 7E-23 1.5E-27 213.4 11.6 138 69-210 776-938 (1394)
343 KOG0056 Heavy metal exporter H 99.9 2.6E-23 5.6E-28 193.8 7.4 143 65-208 547-708 (790)
344 cd03238 ABC_UvrA The excision 99.9 1.5E-22 3.2E-27 168.3 10.5 111 69-210 8-125 (176)
345 COG1101 PhnK ABC-type uncharac 99.9 2.4E-22 5.2E-27 171.3 9.7 141 69-209 19-182 (263)
346 TIGR01271 CFTR_protein cystic 99.9 2.9E-22 6.3E-27 209.9 12.4 132 69-206 1232-1385(1490)
347 PLN03140 ABC transporter G fam 99.9 4.1E-22 8.9E-27 208.0 13.1 139 68-209 892-1054(1470)
348 COG4136 ABC-type uncharacteriz 99.9 1.8E-22 4E-27 164.2 8.0 132 71-204 17-163 (213)
349 COG4778 PhnL ABC-type phosphon 99.9 1.8E-22 3.9E-27 167.1 7.8 141 68-208 23-186 (235)
350 PRK11147 ABC transporter ATPas 99.9 4.5E-22 9.8E-27 193.4 11.1 139 69-209 16-191 (635)
351 COG4172 ABC-type uncharacteriz 99.9 5.7E-22 1.2E-26 181.5 10.7 140 69-208 23-191 (534)
352 TIGR00956 3a01205 Pleiotropic 99.9 4.2E-22 9.1E-27 207.6 9.9 140 69-209 74-244 (1394)
353 COG1134 TagH ABC-type polysacc 99.9 1.4E-21 3E-26 168.8 9.6 134 66-204 37-176 (249)
354 COG0488 Uup ATPase components 99.8 4.2E-21 9.1E-26 183.1 11.4 129 67-207 14-186 (530)
355 COG5265 ATM1 ABC-type transpor 99.8 2.4E-21 5.2E-26 177.9 9.2 138 65-205 272-429 (497)
356 KOG0059 Lipid exporter ABCA1 a 99.8 1.8E-21 3.9E-26 195.5 7.9 146 64-209 573-733 (885)
357 KOG0061 Transporter, ABC super 99.8 1.2E-20 2.6E-25 183.0 12.4 136 69-207 43-203 (613)
358 TIGR01271 CFTR_protein cystic 99.8 1E-20 2.2E-25 198.3 12.6 128 69-209 439-583 (1490)
359 TIGR00957 MRP_assoc_pro multi 99.8 8.2E-21 1.8E-25 199.4 11.3 123 69-207 651-793 (1522)
360 PLN03140 ABC transporter G fam 99.8 4.1E-21 8.8E-26 200.7 8.3 138 69-209 178-371 (1470)
361 PLN03073 ABC transporter F fam 99.8 9.8E-21 2.1E-25 186.4 8.6 141 69-209 190-379 (718)
362 PTZ00243 ABC transporter; Prov 99.8 2.3E-20 5E-25 196.3 11.9 127 69-208 673-816 (1560)
363 PLN03232 ABC transporter C fam 99.8 2.2E-20 4.7E-25 196.0 10.6 123 69-206 630-772 (1495)
364 COG4615 PvdE ABC-type sideroph 99.8 7.7E-20 1.7E-24 167.2 10.7 140 70-209 337-482 (546)
365 PLN03130 ABC transporter C fam 99.8 6.7E-20 1.4E-24 193.3 10.9 120 69-206 630-772 (1622)
366 cd03278 ABC_SMC_barmotin Barmo 99.8 4.1E-20 8.8E-25 155.8 6.3 119 74-208 15-151 (197)
367 KOG0054 Multidrug resistance-a 99.8 4.9E-19 1.1E-23 182.0 11.2 142 64-207 1147-1308(1381)
368 COG0488 Uup ATPase components 99.8 3.5E-19 7.7E-24 169.9 8.8 135 64-209 330-474 (530)
369 cd03270 ABC_UvrA_I The excisio 99.8 4.6E-19 1E-23 152.0 7.9 135 69-209 8-174 (226)
370 COG0378 HypB Ni2+-binding GTPa 99.8 1.3E-19 2.8E-24 152.0 3.7 131 82-221 14-147 (202)
371 cd03279 ABC_sbcCD SbcCD and ot 99.8 2.8E-19 6E-24 151.7 3.7 145 59-210 8-169 (213)
372 cd03272 ABC_SMC3_euk Eukaryoti 99.8 3.6E-18 7.9E-23 146.6 10.2 138 59-210 6-198 (243)
373 KOG0054 Multidrug resistance-a 99.7 1.3E-17 2.7E-22 171.6 10.3 120 71-206 536-675 (1381)
374 cd03273 ABC_SMC2_euk Eukaryoti 99.7 5.4E-18 1.2E-22 147.0 6.3 130 80-209 24-205 (251)
375 COG1129 MglA ABC-type sugar tr 99.7 4.6E-17 9.9E-22 153.6 11.3 143 71-213 274-440 (500)
376 KOG0927 Predicted transporter 99.7 4.3E-17 9.3E-22 153.6 7.5 132 65-210 399-545 (614)
377 COG4178 ABC-type uncharacteriz 99.7 7.9E-17 1.7E-21 154.7 9.3 125 69-207 406-548 (604)
378 COG4138 BtuD ABC-type cobalami 99.7 7.8E-18 1.7E-22 140.2 1.1 136 75-210 18-168 (248)
379 COG1245 Predicted ATPase, RNas 99.7 1.2E-16 2.5E-21 148.5 7.4 109 79-203 365-483 (591)
380 cd03271 ABC_UvrA_II The excisi 99.7 4.3E-16 9.3E-21 137.0 9.8 139 71-210 10-208 (261)
381 cd03274 ABC_SMC4_euk Eukaryoti 99.6 1.4E-17 2.9E-22 142.0 -0.3 131 59-208 8-165 (212)
382 cd03240 ABC_Rad50 The catalyti 99.6 1.3E-16 2.8E-21 135.0 5.3 124 74-209 17-156 (204)
383 KOG0065 Pleiotropic drug resis 99.6 1.4E-16 3E-21 161.9 5.7 138 67-207 802-963 (1391)
384 COG4170 SapD ABC-type antimicr 99.6 4.9E-16 1.1E-20 132.9 4.2 139 70-208 21-191 (330)
385 cd03276 ABC_SMC6_euk Eukaryoti 99.6 1.6E-15 3.6E-20 127.8 6.6 116 82-208 22-147 (198)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.6 5.3E-15 1.2E-19 128.2 7.0 127 82-208 23-193 (247)
387 KOG0060 Long-chain acyl-CoA tr 99.6 1.1E-14 2.4E-19 138.3 9.5 128 68-204 447-599 (659)
388 KOG0062 ATPase component of AB 99.6 4.2E-15 9E-20 139.6 6.6 132 68-208 92-232 (582)
389 KOG0927 Predicted transporter 99.6 7.7E-15 1.7E-19 138.5 8.2 154 52-207 70-254 (614)
390 COG3845 ABC-type uncharacteriz 99.6 1.7E-14 3.7E-19 134.9 10.3 138 70-207 272-436 (501)
391 KOG0066 eIF2-interacting prote 99.5 2.3E-14 5.1E-19 133.1 8.1 133 65-208 596-738 (807)
392 COG1245 Predicted ATPase, RNas 99.5 5.8E-14 1.2E-18 130.7 8.7 127 72-204 91-242 (591)
393 TIGR00101 ureG urease accessor 99.5 1.2E-14 2.5E-19 122.9 3.4 139 83-221 3-142 (199)
394 PRK10463 hydrogenase nickel in 99.5 1.4E-14 3E-19 129.1 2.3 142 70-221 92-235 (290)
395 PRK00635 excinuclease ABC subu 99.4 3.6E-13 7.8E-18 142.2 10.4 50 160-209 791-847 (1809)
396 KOG0064 Peroxisomal long-chain 99.4 4.6E-13 9.9E-18 126.5 8.6 130 68-209 494-646 (728)
397 PRK00349 uvrA excinuclease ABC 99.4 1.1E-12 2.4E-17 132.6 11.3 52 159-210 811-869 (943)
398 cd03280 ABC_MutS2 MutS2 homolo 99.4 6.5E-13 1.4E-17 111.6 5.4 102 72-209 17-125 (200)
399 KOG2355 Predicted ABC-type tra 99.3 1.9E-12 4.2E-17 110.5 7.4 141 64-206 22-179 (291)
400 TIGR00630 uvra excinuclease AB 99.3 4.3E-12 9.2E-17 128.2 9.2 53 158-210 808-867 (924)
401 KOG0062 ATPase component of AB 99.3 6.3E-12 1.4E-16 118.4 6.7 119 71-204 379-511 (582)
402 COG2401 ABC-type ATPase fused 99.3 7E-12 1.5E-16 116.0 6.3 126 69-207 396-539 (593)
403 KOG0065 Pleiotropic drug resis 99.3 6E-12 1.3E-16 128.7 5.9 134 70-206 129-292 (1391)
404 cd00820 PEPCK_HprK Phosphoenol 99.2 5.2E-12 1.1E-16 97.3 3.9 62 70-136 3-65 (107)
405 cd03277 ABC_SMC5_euk Eukaryoti 99.2 1.6E-11 3.4E-16 104.8 5.0 39 171-209 120-165 (213)
406 cd03239 ABC_SMC_head The struc 99.2 6.5E-11 1.4E-15 98.4 8.5 32 178-209 96-133 (178)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.2 1.8E-11 3.8E-16 105.2 3.9 95 70-202 18-118 (222)
408 KOG0066 eIF2-interacting prote 99.2 3E-11 6.4E-16 112.7 4.9 137 71-207 279-445 (807)
409 cd03282 ABC_MSH4_euk MutS4 hom 99.1 4.2E-11 9E-16 101.7 4.2 101 68-204 15-119 (204)
410 TIGR02858 spore_III_AA stage I 99.1 1.2E-10 2.5E-15 103.1 6.9 55 82-136 112-168 (270)
411 KOG0063 RNAse L inhibitor, ABC 99.1 7.3E-11 1.6E-15 109.6 5.8 109 80-204 366-485 (592)
412 cd03283 ABC_MutS-like MutS-lik 99.0 2.1E-10 4.6E-15 96.9 4.7 36 70-106 15-50 (199)
413 cd03243 ABC_MutS_homologs The 99.0 1.7E-10 3.7E-15 97.0 3.6 32 74-105 21-53 (202)
414 cd03227 ABC_Class2 ABC-type Cl 99.0 7.4E-10 1.6E-14 90.2 5.9 87 81-208 21-115 (162)
415 TIGR03238 dnd_assoc_3 dnd syst 98.9 4.9E-10 1.1E-14 105.8 3.9 66 70-138 20-88 (504)
416 cd01128 rho_factor Transcripti 98.9 3.8E-09 8.2E-14 92.5 8.9 128 74-206 8-167 (249)
417 cd03241 ABC_RecN RecN ATPase i 98.9 7E-10 1.5E-14 97.8 3.3 31 178-208 172-208 (276)
418 PTZ00132 GTP-binding nuclear p 98.9 2.4E-09 5.1E-14 90.3 6.1 26 178-203 154-180 (215)
419 cd03242 ABC_RecF RecF is a rec 98.9 2.8E-09 6.2E-14 93.7 6.6 32 178-209 185-227 (270)
420 cd03281 ABC_MSH5_euk MutS5 hom 98.9 3.9E-09 8.5E-14 90.1 6.5 101 71-207 18-123 (213)
421 PRK00635 excinuclease ABC subu 98.8 1.2E-08 2.7E-13 108.4 9.0 51 157-207 1678-1735(1809)
422 cd02023 UMPK Uridine monophosp 98.8 4.5E-09 9.9E-14 87.7 4.6 107 83-206 1-111 (198)
423 COG0178 UvrA Excinuclease ATPa 98.8 1.3E-08 2.7E-13 100.6 6.5 49 158-206 802-857 (935)
424 PRK10078 ribose 1,5-bisphospho 98.7 1.7E-08 3.8E-13 83.7 5.7 59 81-141 2-60 (186)
425 smart00534 MUTSac ATPase domai 98.7 9.3E-09 2E-13 85.5 3.2 90 83-208 1-94 (185)
426 cd03114 ArgK-like The function 98.7 3.7E-09 8.1E-14 85.4 0.7 136 83-221 1-142 (148)
427 KOG0063 RNAse L inhibitor, ABC 98.7 1.5E-08 3.3E-13 94.4 4.2 124 74-204 93-242 (592)
428 PRK10416 signal recognition pa 98.7 6.3E-08 1.4E-12 87.6 7.9 58 79-136 112-176 (318)
429 cd01130 VirB11-like_ATPase Typ 98.6 3.6E-08 7.7E-13 82.0 4.6 41 75-115 18-60 (186)
430 TIGR01069 mutS2 MutS2 family p 98.6 2.7E-08 5.9E-13 99.4 4.6 98 74-207 315-417 (771)
431 cd03284 ABC_MutS1 MutS1 homolo 98.6 5.8E-08 1.2E-12 83.0 5.3 35 71-105 20-54 (216)
432 smart00382 AAA ATPases associa 98.6 5.1E-07 1.1E-11 67.9 9.9 30 80-109 1-30 (148)
433 PRK09435 membrane ATPase/prote 98.6 3.3E-08 7.1E-13 90.0 3.3 135 79-220 54-198 (332)
434 TIGR00235 udk uridine kinase. 98.6 5.3E-08 1.2E-12 82.1 4.3 29 79-107 4-32 (207)
435 PRK06995 flhF flagellar biosyn 98.6 7.9E-08 1.7E-12 91.4 5.7 45 74-118 248-296 (484)
436 PRK09825 idnK D-gluconate kina 98.5 1E-07 2.2E-12 79.1 4.9 37 80-119 2-38 (176)
437 cd03287 ABC_MSH3_euk MutS3 hom 98.5 9.5E-08 2.1E-12 82.3 4.3 43 70-112 19-64 (222)
438 PF02463 SMC_N: RecF/RecN/SMC 98.5 7.1E-08 1.5E-12 81.5 3.4 23 80-102 23-45 (220)
439 cd01120 RecA-like_NTPases RecA 98.5 3.9E-07 8.5E-12 71.5 7.1 36 83-118 1-37 (165)
440 PF13555 AAA_29: P-loop contai 98.5 1.4E-07 3E-12 65.9 3.5 35 74-108 16-50 (62)
441 PRK06002 fliI flagellum-specif 98.5 1.5E-07 3.2E-12 88.7 4.7 66 71-137 155-229 (450)
442 PRK03846 adenylylsulfate kinas 98.5 2E-07 4.3E-12 78.2 4.7 58 77-138 20-79 (198)
443 TIGR02322 phosphon_PhnN phosph 98.4 3.4E-07 7.4E-12 75.0 5.9 33 81-113 1-33 (179)
444 PRK09270 nucleoside triphospha 98.4 2.4E-07 5.2E-12 79.5 5.1 35 79-113 31-66 (229)
445 PRK00300 gmk guanylate kinase; 98.4 1.9E-07 4.2E-12 77.9 4.1 28 79-106 3-30 (205)
446 TIGR00554 panK_bact pantothena 98.4 3.1E-07 6.7E-12 82.2 4.8 45 79-123 60-107 (290)
447 PRK13695 putative NTPase; Prov 98.4 1.4E-07 2.9E-12 77.4 2.1 102 83-204 2-107 (174)
448 PRK06793 fliI flagellum-specif 98.4 1.5E-06 3.4E-11 81.6 9.2 44 74-117 148-193 (432)
449 PRK06315 type III secretion sy 98.3 1.1E-06 2.4E-11 82.8 7.4 102 76-177 158-291 (442)
450 PRK00409 recombination and DNA 98.3 2E-07 4.3E-12 93.4 2.6 103 71-207 317-422 (782)
451 PRK14723 flhF flagellar biosyn 98.3 6.6E-07 1.4E-11 89.0 5.7 47 72-118 175-225 (767)
452 PRK07196 fliI flagellum-specif 98.3 3.6E-07 7.9E-12 85.8 3.4 68 70-138 144-222 (434)
453 PRK08533 flagellar accessory p 98.3 1.6E-06 3.5E-11 74.8 7.1 36 79-114 22-59 (230)
454 cd02026 PRK Phosphoribulokinas 98.3 7.1E-07 1.5E-11 79.1 4.9 54 83-137 1-54 (273)
455 PRK07721 fliI flagellum-specif 98.3 9.7E-07 2.1E-11 83.2 5.1 64 71-135 148-221 (438)
456 cd02025 PanK Pantothenate kina 98.2 9.7E-07 2.1E-11 75.7 4.2 36 83-118 1-39 (220)
457 cd01136 ATPase_flagellum-secre 98.1 3E-06 6.4E-11 77.1 4.9 47 70-117 58-106 (326)
458 PRK08149 ATP synthase SpaL; Va 98.1 1.6E-06 3.5E-11 81.4 3.2 66 70-136 140-214 (428)
459 TIGR00750 lao LAO/AO transport 98.1 8.2E-07 1.8E-11 79.4 1.1 49 71-119 23-73 (300)
460 TIGR02524 dot_icm_DotB Dot/Icm 98.1 2.6E-06 5.6E-11 78.3 4.3 57 79-136 132-192 (358)
461 TIGR03263 guanyl_kin guanylate 98.1 2.6E-06 5.7E-11 69.5 3.7 27 81-107 1-27 (180)
462 cd01124 KaiC KaiC is a circadi 98.1 6.5E-06 1.4E-10 67.2 6.0 97 83-204 1-106 (187)
463 TIGR02788 VirB11 P-type DNA tr 98.1 2.3E-06 5E-11 76.8 3.6 39 76-114 138-178 (308)
464 PLN02796 D-glycerate 3-kinase 98.1 2.9E-06 6.3E-11 77.6 4.2 38 82-119 101-142 (347)
465 PRK05480 uridine/cytidine kina 98.1 4.8E-06 1.1E-10 70.0 5.0 40 79-119 4-43 (209)
466 PRK01889 GTPase RsgA; Reviewed 98.1 5.3E-06 1.2E-10 76.1 5.4 55 79-136 193-248 (356)
467 TIGR03498 FliI_clade3 flagella 98.1 4.6E-06 1E-10 78.2 4.9 45 74-118 132-178 (418)
468 COG3910 Predicted ATPase [Gene 98.0 1.7E-05 3.8E-10 67.2 7.2 137 65-210 19-163 (233)
469 PRK14974 cell division protein 98.0 4.4E-06 9.5E-11 76.3 3.9 41 79-119 138-179 (336)
470 TIGR00606 rad50 rad50. This fa 98.0 9.1E-06 2E-10 85.6 6.6 58 75-136 24-87 (1311)
471 cd01854 YjeQ_engC YjeQ/EngC. 98.0 3.3E-06 7.2E-11 75.1 2.8 34 80-113 160-194 (287)
472 TIGR02546 III_secr_ATP type II 98.0 8.1E-06 1.7E-10 76.6 5.4 47 70-117 134-182 (422)
473 TIGR01026 fliI_yscN ATPase Fli 98.0 7.5E-06 1.6E-10 77.2 5.1 47 70-117 152-200 (440)
474 PRK07594 type III secretion sy 98.0 5.9E-06 1.3E-10 77.7 4.2 48 69-117 143-192 (433)
475 cd04155 Arl3 Arl3 subfamily. 98.0 7.1E-06 1.5E-10 65.8 3.9 38 79-116 12-58 (173)
476 TIGR00630 uvra excinuclease AB 98.0 1.5E-05 3.2E-10 81.3 6.8 49 160-208 469-523 (924)
477 PRK09099 type III secretion sy 98.0 1E-05 2.2E-10 76.3 5.3 47 70-117 152-200 (441)
478 PRK00349 uvrA excinuclease ABC 97.9 1.3E-05 2.9E-10 81.8 6.3 49 160-208 471-525 (943)
479 TIGR00618 sbcc exonuclease Sbc 97.9 7.3E-06 1.6E-10 84.5 4.4 40 59-102 8-47 (1042)
480 PRK00098 GTPase RsgA; Reviewed 97.9 6.3E-06 1.4E-10 73.7 3.4 34 80-113 163-197 (298)
481 PRK07960 fliI flagellum-specif 97.9 7E-06 1.5E-10 77.5 3.7 64 74-138 167-239 (455)
482 TIGR02903 spore_lon_C ATP-depe 97.9 3E-05 6.5E-10 76.0 8.0 40 79-118 173-221 (615)
483 PRK09862 putative ATP-dependen 97.9 9.2E-06 2E-10 77.8 4.2 49 70-118 198-248 (506)
484 TIGR03497 FliI_clade2 flagella 97.9 1.2E-05 2.5E-10 75.4 4.7 48 70-118 126-175 (413)
485 PRK00889 adenylylsulfate kinas 97.9 1.1E-05 2.4E-10 65.9 3.4 37 79-115 2-39 (175)
486 cd04159 Arl10_like Arl10-like 97.9 1.2E-05 2.6E-10 62.4 3.3 21 84-104 2-22 (159)
487 TIGR00073 hypB hydrogenase acc 97.9 6.7E-06 1.4E-10 69.4 1.9 128 80-219 21-151 (207)
488 cd01131 PilT Pilus retraction 97.8 1.6E-05 3.4E-10 67.0 4.0 36 83-118 3-40 (198)
489 PRK05922 type III secretion sy 97.8 1.8E-05 4E-10 74.4 4.7 42 75-116 150-193 (434)
490 TIGR03496 FliI_clade1 flagella 97.8 1.5E-05 3.2E-10 74.7 4.0 42 76-117 131-174 (411)
491 PRK04863 mukB cell division pr 97.8 1.6E-05 3.6E-10 84.3 4.6 36 82-117 28-64 (1486)
492 TIGR01360 aden_kin_iso1 adenyl 97.8 1E-05 2.2E-10 66.1 2.5 33 80-112 2-38 (188)
493 PRK14721 flhF flagellar biosyn 97.8 1.3E-05 2.8E-10 75.2 3.4 27 79-105 189-215 (420)
494 PRK14722 flhF flagellar biosyn 97.8 1.6E-05 3.5E-10 73.5 4.0 49 71-119 126-178 (374)
495 PRK11545 gntK gluconate kinase 97.8 1.2E-05 2.5E-10 65.8 2.6 47 87-137 1-47 (163)
496 PRK07429 phosphoribulokinase; 97.8 2.7E-05 5.8E-10 70.9 5.0 29 80-108 7-35 (327)
497 TIGR00455 apsK adenylylsulfate 97.8 1.5E-05 3.3E-10 65.7 3.2 40 79-118 16-57 (184)
498 PLN03046 D-glycerate 3-kinase; 97.8 1.7E-05 3.8E-10 74.4 3.6 40 80-119 211-254 (460)
499 cd00879 Sar1 Sar1 subfamily. 97.8 2.1E-05 4.4E-10 64.4 3.6 32 72-103 10-41 (190)
500 PRK08472 fliI flagellum-specif 97.8 2.4E-05 5.2E-10 73.7 4.3 47 71-118 147-195 (434)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.4e-35 Score=256.64 Aligned_cols=144 Identities=27% Similarity=0.326 Sum_probs=129.1
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
+.+++++++|+ ++|++++|+||||||||||||+|+|+++|. |+|.++|+++..++.+++.+.++||||.+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 45688999999 999999999999999999999999999998 999999999999999999999999999865
Q ss_pred -HHHHhcCCCCcch-----HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 -RAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 -~~i~~g~~~~~~~-----~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+.+.+|+.|+..+ +++.+.+.++|+.+++....++.+.+ ||||||||.|||||+ +|+|++|| ||+.+|+..
T Consensus 94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 6678888886543 45677899999999999999999999 999999999999999 99999999 677777654
Q ss_pred cC
Q 027509 210 KG 211 (222)
Q Consensus 210 K~ 211 (222)
..
T Consensus 174 Q~ 175 (258)
T COG1120 174 QI 175 (258)
T ss_pred HH
Confidence 33
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=244.58 Aligned_cols=139 Identities=22% Similarity=0.214 Sum_probs=116.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCC-ChHHHhhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~-~~~e~~~~ig~v~Q~~~-------- 138 (222)
.++.+++++ ++||+++|+||+|||||||||||++|.+|+ |+|.++|.++... +..++|+++|+|||.++
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvl 95 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVL 95 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHH
Confidence 378899999 999999999999999999999999999998 9999999877443 34567889999999976
Q ss_pred HHHHhcCCC--CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCC
Q 027509 139 RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIP 208 (222)
Q Consensus 139 ~~i~~g~~~--~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p 208 (222)
+|+.++... .....+..+.++++|+++++.+..+.++.+ ||||||||+|||||+ +|+++++|||++--+|
T Consensus 96 eNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDP 169 (240)
T COG1126 96 ENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP 169 (240)
T ss_pred HHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCH
Confidence 444443221 112234457788999999999999999999 999999999999999 9999999988876665
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-33 Score=244.54 Aligned_cols=141 Identities=21% Similarity=0.289 Sum_probs=118.6
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|..+ +++.+++|+ ++|++++|+||||||||||+|+|+|+++|+ |+|.+.+.++..... +.+||||||...
T Consensus 14 y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgYVPQ~~~~d~~ 89 (254)
T COG1121 14 YGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGYVPQKSSVDRS 89 (254)
T ss_pred ECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEEcCcccccCCC
Confidence 4434 689999999 999999999999999999999999999998 999999987743211 357999999553
Q ss_pred ------HHHHhcCCCCcch-----HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 ------RAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ------~~i~~g~~~~~~~-----~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+.+.+|......+ +++.+.+.++|+++++....++.+.+ ||||+|||.|||||+ +|+++||| |+.|
T Consensus 90 fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~g 169 (254)
T COG1121 90 FPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTG 169 (254)
T ss_pred CCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCccc
Confidence 5566665544322 45678899999999999999999999 999999999999999 99999999 7778
Q ss_pred CCCCc
Q 027509 205 DKIPR 209 (222)
Q Consensus 205 ~d~p~ 209 (222)
.|...
T Consensus 170 vD~~~ 174 (254)
T COG1121 170 VDVAG 174 (254)
T ss_pred CCHHH
Confidence 88653
No 4
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-32 Score=236.16 Aligned_cols=138 Identities=20% Similarity=0.143 Sum_probs=112.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---H-hhccEEecCchH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI---- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~-~~~ig~v~Q~~~---- 138 (222)
..++.+++|+ ++||+++|+||+||||||||++|.|+.+|+ |.|.++|.++...+..+ + ++.||||||+.+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 4578899999 999999999999999999999999999999 99999999998776543 3 357999999876
Q ss_pred ----HHHHhcCCC-CcchHHHHHHHHHHHHhcCCccccc-CcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCC
Q 027509 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNLFKAD-LLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDK 206 (222)
Q Consensus 139 ----~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d-~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d 206 (222)
+|+.+.... .....+...++.++++.+++.+..+ +++.+ ||||||||+|||||+ +|+|+|.|||+|--
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnL 173 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL 173 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccC
Confidence 666643211 1111133456777888999986666 88989 999999999999999 99999999666644
No 5
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.4e-32 Score=237.71 Aligned_cols=133 Identities=20% Similarity=0.117 Sum_probs=113.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++.++||+ .+||+++|+||+|||||||||+|+|+.+|+ |+|.++|..+... ...++||||+..
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEEEeccCcccchhhHH
Confidence 4488999999 999999999999999999999999999999 9999999987332 357999999976
Q ss_pred HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCC
Q 027509 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDK 206 (222)
Q Consensus 139 ~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d 206 (222)
+|+.++.... ....+..+++.++|+.+++....++++.+ ||||||||+|||||+ +|+|++||||.|--
T Consensus 91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL 161 (248)
T COG1116 91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161 (248)
T ss_pred hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh
Confidence 6666654322 12233446789999999999999999999 999999999999999 99999999887743
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=3.3e-32 Score=236.17 Aligned_cols=139 Identities=21% Similarity=0.181 Sum_probs=117.9
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
...++++++|+ ++||+++|+||+||||||+||||++++.|+ |+|.++|.++...+..++|++||||-|...
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence 45578899999 999999999999999999999999999999 999999999999999999999999988642
Q ss_pred -HHHHhcCCCCc-ch--HHHHHHHHHHHHhcCCcc--cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCC
Q 027509 139 -RAVETGGCPHA-AI--REDISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIP 208 (222)
Q Consensus 139 -~~i~~g~~~~~-~~--~~~~~~~~~~L~~l~l~~--~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p 208 (222)
+|+.+ .|.+ .| .+..+++.++|+.+++.. +.++++.+ ||||||||.+||||+ +|+|++||||.|--+|
T Consensus 93 ~eNIa~--VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDp 168 (309)
T COG1125 93 AENIAT--VPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168 (309)
T ss_pred HHHHHh--hhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccCh
Confidence 33322 1211 11 223367888999999974 78999999 999999999999999 9999999999887655
No 7
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.2e-32 Score=239.57 Aligned_cols=140 Identities=19% Similarity=0.126 Sum_probs=118.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~----- 138 (222)
..++++++|. ++|+|+||+|.+|||||||+|||++|.+|+ |+|.++|.++...+.. ++|++||+|||+++
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 4578899999 999999999999999999999999999999 9999999988776654 45678999999987
Q ss_pred ---HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCC
Q 027509 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIP 208 (222)
Q Consensus 139 ---~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p 208 (222)
+|+.+...- .....+..+++.++|+.+++.++.+.++.+ ||||||||+|||||+ +|+|++.||+++--+|
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP 174 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCCh
Confidence 344332211 112234557899999999999999999999 999999999999999 9999999988776655
No 8
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.7e-32 Score=235.53 Aligned_cols=157 Identities=20% Similarity=0.160 Sum_probs=130.8
Q ss_pred CCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---HhhccEEecCchH
Q 027509 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI 138 (222)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~~~~ig~v~Q~~~ 138 (222)
.|..+..++.+++|+ ++||+++|+||+|||||||||+|+|++.|+ |+|.++|.++.....++ .+++|||+||.++
T Consensus 12 ~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred ecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 354556688999999 999999999999999999999999999998 99999999887766544 4668999999886
Q ss_pred --------HHHHhcCCCCcc---------hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEE
Q 027509 139 --------RAVETGGCPHAA---------IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (222)
Q Consensus 139 --------~~i~~g~~~~~~---------~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlIL 199 (222)
+|+..|...+.. .+++...+.++|+++++.+..-....+ ||||||||+|||||+ +|+|++.
T Consensus 92 Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILA 171 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA 171 (258)
T ss_pred cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEec
Confidence 677666554322 267778899999999999988888889 999999999999999 9999999
Q ss_pred e-cCCCCCCCccCCCceeeccc
Q 027509 200 D-VSGGDKIPRKGGPGITQADL 220 (222)
Q Consensus 200 D-~t~G~d~p~K~~~~~~~~~~ 220 (222)
| |+.++|...=.-+|-.+.||
T Consensus 172 DEPvasLDp~~a~~Vm~~l~~i 193 (258)
T COG3638 172 DEPVASLDPESAKKVMDILKDI 193 (258)
T ss_pred CCcccccChhhHHHHHHHHHHH
Confidence 9 66778876655555554444
No 9
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.97 E-value=9e-32 Score=224.82 Aligned_cols=145 Identities=18% Similarity=0.167 Sum_probs=120.7
Q ss_pred CCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---HhhccEEecCchH
Q 027509 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI 138 (222)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~~~~ig~v~Q~~~ 138 (222)
.|....+++.+++|. ++||++-|+||+|||||||||+|++..+|+ |+|++++.++......+ +|++||+|||+..
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc
Confidence 455556689999999 999999999999999999999999999999 99999999997655433 5789999999875
Q ss_pred --------HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCC
Q 027509 139 --------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKI 207 (222)
Q Consensus 139 --------~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~ 207 (222)
+|+.+...- ...-++..+++.++|+.+++..+.+.++.+ ||||||||+||||++ +|+|+|.|||+|--+
T Consensus 90 LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLD 169 (223)
T COG2884 90 LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169 (223)
T ss_pred ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCC
Confidence 454443211 112244557899999999999999999999 999999999999999 999999997776554
Q ss_pred C
Q 027509 208 P 208 (222)
Q Consensus 208 p 208 (222)
|
T Consensus 170 p 170 (223)
T COG2884 170 P 170 (223)
T ss_pred h
Confidence 4
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2e-32 Score=247.31 Aligned_cols=145 Identities=13% Similarity=0.032 Sum_probs=122.0
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~ 140 (222)
++.+++++ ++||+++|+||||||||||||+|+|+..|+ |+|.++|.+++..++.+ |+|++|||+.. +|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCccccCCCcHHHH
Confidence 67889999 999999999999999999999999999998 99999999998877654 78999999865 55
Q ss_pred HHhcCCCCcc-hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC-CCCCccCCCcee
Q 027509 141 VETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG-DKIPRKGGPGIT 216 (222)
Q Consensus 141 i~~g~~~~~~-~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G-~d~p~K~~~~~~ 216 (222)
+.++...... ..+..+++.++++.|++...+++++.+ ||||||||+|||||+ +|++++||||-+ +|...|..+...
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e 175 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHH
Confidence 5555432211 123447788899999999999999999 999999999999999 999999997766 877766655444
Q ss_pred e
Q 027509 217 Q 217 (222)
Q Consensus 217 ~ 217 (222)
.
T Consensus 176 i 176 (338)
T COG3839 176 I 176 (338)
T ss_pred H
Confidence 3
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=2.6e-32 Score=247.71 Aligned_cols=149 Identities=17% Similarity=0.085 Sum_probs=123.4
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
...++.++|++ ++||+++|+||||||||||||||+|+..|+ |+|.++|.+++..++. +|+||+|||+..
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccceeecCcccCCCCcH
Confidence 45588899999 999999999999999999999999999999 9999999999876553 578999999865
Q ss_pred -HHHHhcCCCCc-ch-HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecC-CCCCCCccCC
Q 027509 139 -RAVETGGCPHA-AI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVS-GGDKIPRKGG 212 (222)
Q Consensus 139 -~~i~~g~~~~~-~~-~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t-~G~d~p~K~~ 212 (222)
+|+.+|..... .. .+..+++.++|+.+++....++++.+ ||||||||+|||||+ +|+|++|||| +.+|...|.-
T Consensus 95 ~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~ 174 (352)
T COG3842 95 EENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174 (352)
T ss_pred HHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHH
Confidence 67777755111 11 23447899999999999999999999 999999999999999 9999999955 4556655554
Q ss_pred Cceeec
Q 027509 213 PGITQA 218 (222)
Q Consensus 213 ~~~~~~ 218 (222)
+...+.
T Consensus 175 mr~Elk 180 (352)
T COG3842 175 MRKELK 180 (352)
T ss_pred HHHHHH
Confidence 444433
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=9.3e-31 Score=233.03 Aligned_cols=140 Identities=22% Similarity=0.204 Sum_probs=115.7
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
+..++++++|+ ++|+++||+||||||||||||+|+|+++|+ |+|.++|.++... ..++++++||+||++.
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~~lT~ 95 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYPELTV 95 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCCCCccccH
Confidence 45688999999 999999999999999999999999999998 9999999988543 5677889999999986
Q ss_pred -HHHHhcCCCCcch-HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 -RAVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 -~~i~~g~~~~~~~-~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+++.+....+... ....+++.++++.+++....++.+.+ |+|||||+.||+||+ +|+||||| |++|+|.-
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~ 170 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHH
Confidence 4444322211111 22345788899999998766788888 999999999999999 99999999 77788854
No 13
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.4e-31 Score=229.36 Aligned_cols=153 Identities=19% Similarity=0.100 Sum_probs=125.7
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC-CChHHHhhccEEecCchH---
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-KEDGEFLMRNGALPEERI--- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~-~~~~e~~~~ig~v~Q~~~--- 138 (222)
|.++.+++.+++|+ ++|++++|+|+||||||||+++|+|+++|+ |.|.++|.++.. .+..++++++|||||+|.
T Consensus 13 y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~ 92 (235)
T COG1122 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQL 92 (235)
T ss_pred cCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccc
Confidence 33345788999999 999999999999999999999999999998 999999998763 456778899999999996
Q ss_pred ------HHHHhcCCCCc-chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 ------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 ------~~i~~g~~~~~-~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+.+.||..... ...+..+++.++|+.+++...+++.+.+ ||||||||+||.+|+ +|+++||| ||+|+|..
T Consensus 93 ~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~ 172 (235)
T COG1122 93 FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK 172 (235)
T ss_pred ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHH
Confidence 23444433221 2234457888999999999999999999 999999999999999 99999999 77788876
Q ss_pred ccCCCceee
Q 027509 209 RKGGPGITQ 217 (222)
Q Consensus 209 ~K~~~~~~~ 217 (222)
.+..++-..
T Consensus 173 ~~~~l~~~l 181 (235)
T COG1122 173 GRRELLELL 181 (235)
T ss_pred HHHHHHHHH
Confidence 665554433
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.7e-30 Score=223.66 Aligned_cols=140 Identities=23% Similarity=0.204 Sum_probs=116.6
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH----
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI---- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~---- 138 (222)
...++.+++|+ ++||+++|+||+|||||||||+|.|+++|+ |+|.++|.++...+.. ++++++|++||.-.
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFss 99 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSS 99 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccc
Confidence 34578899999 999999999999999999999999999998 9999999998776553 45678999999765
Q ss_pred ----HHHHhcCCCCcch--HHHHHHHHHHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 ----RAVETGGCPHAAI--REDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 ----~~i~~g~~~~~~~--~~~~~~~~~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+|+.+....+... ......+...|+.+++... .++++.| ||||++|++|||||+ +|+|+++| ||+|+|.
T Consensus 100 ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDP 178 (263)
T COG1127 100 LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP 178 (263)
T ss_pred cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCc
Confidence 5555543333332 2233567778999999877 9999999 999999999999999 99999999 6677773
No 15
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=4e-30 Score=213.72 Aligned_cols=141 Identities=19% Similarity=0.126 Sum_probs=110.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC--CChHHHhhccEEecCchH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI------ 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~------ 138 (222)
..++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.. .....+++.++|+||++.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4578899999 999999999999999999999999999998 999999988742 112345667999999862
Q ss_pred ---HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ---~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.+.... .....+..+.+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 162 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 233322110 111122234567788899988888899999 999999999999999 99999999 777887553
No 16
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3e-30 Score=221.08 Aligned_cols=142 Identities=25% Similarity=0.241 Sum_probs=113.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh---HHHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~---~e~~~~ig~v~Q~~~------ 138 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+. ..+++.++|+||++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT 93 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence 478899999 999999999999999999999999999998 999999988765433 345678999999864
Q ss_pred --HHHHhcCCCC--cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 139 --RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 139 --~~i~~g~~~~--~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+.
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 3343321111 11122334567789999988778888889 999999999999999 99999999 67788866543
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.2e-30 Score=228.42 Aligned_cols=137 Identities=16% Similarity=0.115 Sum_probs=113.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh-HHHhhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~-~e~~~~ig~v~Q~~~-------- 138 (222)
.++.+++++ +.||+++|+||||||||||||+|+|++.|+ |+|.+++..++..+. ....++||||||+..
T Consensus 16 ~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa 95 (345)
T COG1118 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVA 95 (345)
T ss_pred cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHH
Confidence 366689999 999999999999999999999999999999 999999993332212 233578999999875
Q ss_pred HHHHhcCCCC---cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCC
Q 027509 139 RAVETGGCPH---AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDK 206 (222)
Q Consensus 139 ~~i~~g~~~~---~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d 206 (222)
+|+.||.... ....+...++.+.|+.+.++...++++.+ ||||+|||++||||+ +|+|++||||.|.-
T Consensus 96 ~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~AL 168 (345)
T COG1118 96 DNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168 (345)
T ss_pred hhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhh
Confidence 6777775322 11234557788899999999999999999 999999999999999 99999999887754
No 18
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=4e-30 Score=216.50 Aligned_cols=141 Identities=21% Similarity=0.126 Sum_probs=112.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------- 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.++|+||++.
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~ 94 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVE 94 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHH
Confidence 478899999 999999999999999999999999999998 999999998865444556678999999863
Q ss_pred HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+..... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |++|+|...+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 170 (211)
T cd03225 95 EEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGR 170 (211)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 2222211100 11122234567788999988778888999 999999999999999 99999999 7788886644
No 19
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=5.3e-30 Score=232.84 Aligned_cols=141 Identities=17% Similarity=0.101 Sum_probs=115.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---HhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~~~~ig~v~Q~~~------ 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ .+++|+|+||++.
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 578999999 999999999999999999999999999998 99999999987655443 4668999999865
Q ss_pred --HHHHhcCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 --~~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+|+.++.. ......+...++.++++.+++....++++.+ ||||||||+|||||+ +|+|+||| |++++|...+
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~ 176 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 44443321 1111223345678899999999889999999 999999999999999 99999999 6667775444
No 20
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.96 E-value=4.3e-30 Score=217.35 Aligned_cols=142 Identities=22% Similarity=0.159 Sum_probs=111.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH----HhhccEEecCchH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNGALPEERI---- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e----~~~~ig~v~Q~~~---- 138 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+... .++.++|+||++.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 3578899999 999999999999999999999999999998 99999998875543222 2457999999864
Q ss_pred ----HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ----~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ....+..+.+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 3333321111 11122234567789999998778888888 999999999999999 99999999 7777776543
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-30 Score=237.51 Aligned_cols=143 Identities=13% Similarity=0.021 Sum_probs=117.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+. +++|+||||++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCHH
Confidence 3477899999 999999999999999999999999999998 9999999998654443 468999999865
Q ss_pred HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccCCC
Q 027509 139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGP 213 (222)
Q Consensus 139 ~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~~~ 213 (222)
+|+.++... .....+...++.++++.+++....++++.+ ||||||||+|||||+ +|+||||| |++++|...+..+
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l 173 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM 173 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 455554321 112223345677899999999889999999 999999999999999 99999999 6778887665543
No 22
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.96 E-value=3.7e-30 Score=217.63 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=111.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~------ 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+.. .+++.++|+||++.
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 478899999 999999999999999999999999999998 9999999887543322 34678999999864
Q ss_pred --HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 --RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 --~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 174 (216)
T TIGR00960 97 VYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 (216)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 3333221100 11112335667789999998888888889 999999999999999 99999999 7778876543
No 23
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7.9e-30 Score=215.22 Aligned_cols=140 Identities=16% Similarity=0.096 Sum_probs=110.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+. .++.++|+||++.
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhhccCCcHH
Confidence 3478899999 999999999999999999999999999998 999999998754322 3467999999865
Q ss_pred HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~ 166 (213)
T cd03259 91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166 (213)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 2332221110 11122234567789999988778888888 999999999999999 99999999 7778886644
No 24
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.96 E-value=1.1e-29 Score=214.29 Aligned_cols=142 Identities=18% Similarity=0.140 Sum_probs=111.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~----- 138 (222)
..++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+.. .+++.++|+||++.
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence 3478899999 999999999999999999999999999998 9999999988654322 34567999999864
Q ss_pred ---HHHHhcCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+... ...........+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 22222210 0011112234567789999988777888888 999999999999999 99999999 7778886544
No 25
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-29 Score=218.94 Aligned_cols=135 Identities=19% Similarity=0.181 Sum_probs=109.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC-hHHHhhccEEecCchHHH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRA------ 140 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~-~~e~~~~ig~v~Q~~~~~------ 140 (222)
.++++++|+ .+||++||+|++|||||||.++|+|+.+|+ |+|.++|.++.... ..++.+.+-+|||+|..-
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 588999999 999999999999999999999999999998 99999998775532 345677899999999721
Q ss_pred ----HHhcCCCCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCC
Q 027509 141 ----VETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGD 205 (222)
Q Consensus 141 ----i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~ 205 (222)
+.-.... ....+..+++.++|+.+++.. .+++++.+ ||||+||++|||||+ +|+++|+|||+..
T Consensus 101 v~~~l~Epl~~-~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSa 171 (252)
T COG1124 101 VGRILSEPLRP-HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171 (252)
T ss_pred HHHHHhhhhcc-CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhh
Confidence 1111111 112223345888999999974 78999999 999999999999999 9999999966554
No 26
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.96 E-value=1.3e-29 Score=231.85 Aligned_cols=140 Identities=16% Similarity=0.096 Sum_probs=115.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH----hhccEEecCchH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI---- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~----~~~ig~v~Q~~~---- 138 (222)
..++.+++|+ ++||+++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++ +++++||||++.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 4478899999 999999999999999999999999999998 999999999987666655 568999999864
Q ss_pred ----HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 ----~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+|+.++... .....+..+++.++++.+++....++++.+ ||||||||+|||||+ +|+|+||| |++++|..
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 444443211 111223345678899999998889999999 999999999999999 99999999 55666643
No 27
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=1.1e-29 Score=226.27 Aligned_cols=141 Identities=21% Similarity=0.168 Sum_probs=113.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|+++||+|||||||||||++|+|+++|+ |+|.++|.++.. ...+.++.++|+||++.
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 3478899999 999999999999999999999999999998 999999998854 34456678999999864
Q ss_pred HHHHhcCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+... ......+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |++|+|...+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 33333211 1111122234577889999998888999999 999999999999999 99999999 7778886543
No 28
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.96 E-value=1.1e-29 Score=235.12 Aligned_cols=143 Identities=22% Similarity=0.273 Sum_probs=120.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++||+++|+||||||||||||+|+|+++|+ |+|.++|.++......+++++++|++|++.
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~ 95 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR 95 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHH
Confidence 3578899999 999999999999999999999999999998 999999999876666777888999999865
Q ss_pred HHHHhcCCCCc---c--hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPHA---A--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~~---~--~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++..++. . ..++.+.+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|+..+
T Consensus 96 e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~ 175 (402)
T PRK09536 96 QVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQ 175 (402)
T ss_pred HHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 45555544321 1 123456778899999998888999999 999999999999999 99999999 7788887654
Q ss_pred C
Q 027509 211 G 211 (222)
Q Consensus 211 ~ 211 (222)
.
T Consensus 176 ~ 176 (402)
T PRK09536 176 V 176 (402)
T ss_pred H
Confidence 4
No 29
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=1e-29 Score=213.66 Aligned_cols=136 Identities=15% Similarity=0.094 Sum_probs=108.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ..++++++|+||++.
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccH
Confidence 3478899999 999999999999999999999999999998 999999988742 345567999999863
Q ss_pred -HHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 -~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... . ......+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 90 ~e~l~~~~~~-~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 162 (205)
T cd03226 90 REELLLGLKE-L--DAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM 162 (205)
T ss_pred HHHHhhhhhh-c--CccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHH
Confidence 222221100 0 01124567789999998888999999 999999999999999 99999999 7778876543
No 30
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.2e-29 Score=215.79 Aligned_cols=142 Identities=19% Similarity=0.164 Sum_probs=112.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC---hHHHhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~---~~e~~~~ig~v~Q~~~----- 138 (222)
..++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+ ...+++.++|+||++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 3478899999 999999999999999999999999999998 99999999876544 2345678999999864
Q ss_pred ---HHHHhcCCCC---------cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ---RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ---~~i~~g~~~~---------~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.+..... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 3343321110 00012334567788999988778888888 999999999999999 99999999 777
Q ss_pred CCCCCcc
Q 027509 204 GDKIPRK 210 (222)
Q Consensus 204 G~d~p~K 210 (222)
|+|...+
T Consensus 174 ~LD~~~~ 180 (241)
T cd03256 174 SLDPASS 180 (241)
T ss_pred cCCHHHH
Confidence 8876544
No 31
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=1.3e-29 Score=226.59 Aligned_cols=141 Identities=20% Similarity=0.167 Sum_probs=114.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|+++||+||||||||||+++|+|+++|+ |+|.++|.++... ..+.+++|||+||++.
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~-~~~~~~~ig~v~q~~~~~~~~tv~ 98 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR-ARHARQRVGVVPQFDNLDPDFTVR 98 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc-hHHHHhcEEEEeccCcCCCCCcHH
Confidence 3478899999 999999999999999999999999999998 9999999988543 3456788999999865
Q ss_pred HHHHhc-CCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETG-GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g-~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+. ........+...++.++++.+++....++.+.. |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~ 174 (306)
T PRK13537 99 ENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174 (306)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHH
Confidence 344321 111111222334567788999998888899989 999999999999999 99999999 7888886544
No 32
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.96 E-value=1.5e-29 Score=213.19 Aligned_cols=141 Identities=19% Similarity=0.129 Sum_probs=110.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh---HHHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~---~e~~~~ig~v~Q~~~------ 138 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+. ..+++.++|+||++.
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 478899999 999999999999999999999999999998 999999998865432 235668999999864
Q ss_pred --HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 --RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 --~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+..... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |++|+|...+
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 172 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 3333221100 11122234567788999988778888888 999999999999999 99999999 6668876543
No 33
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.96 E-value=2.9e-29 Score=215.48 Aligned_cols=141 Identities=22% Similarity=0.187 Sum_probs=111.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh---HHHhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~---~e~~~~ig~v~Q~~~----- 138 (222)
..++++++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+. ..+++.++|+||++.
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL 94 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccc
Confidence 4578899999 999999999999999999999999999998 999999988754332 234567999999864
Q ss_pred ---HHHHhcCCCC---------cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ---RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ---~~i~~g~~~~---------~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.++.... ....+...++.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |++
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 174 (243)
T TIGR02315 95 TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIA 174 (243)
T ss_pred cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3343322110 00122335667788999988778888888 999999999999999 99999999 666
Q ss_pred CCCCCc
Q 027509 204 GDKIPR 209 (222)
Q Consensus 204 G~d~p~ 209 (222)
|+|...
T Consensus 175 ~LD~~~ 180 (243)
T TIGR02315 175 SLDPKT 180 (243)
T ss_pred cCCHHH
Confidence 888553
No 34
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=216.88 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=108.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~------- 138 (222)
..++.+++|+ ++|||++|+|+|||||||||++|+|++++. |+|.++|.||+...+.++ +..|+||||.+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV 95 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTV 95 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcH
Confidence 5578899999 999999999999999999999999999997 999999999988777554 567999999875
Q ss_pred -HHHHhcCCCCcchHHHHHHHHHHHHhcC-CcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 139 -RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 139 -~~i~~g~~~~~~~~~~~~~~~~~L~~l~-l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
+|+.++...............++++.|- +....++...+ ||||||.++|||||+ +|++++||||+-
T Consensus 96 eENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~ 165 (237)
T COG0410 96 EENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 165 (237)
T ss_pred HHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 7777765432210111111333444443 44667888888 999999999999999 999999995553
No 35
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.6e-29 Score=214.62 Aligned_cols=140 Identities=21% Similarity=0.184 Sum_probs=111.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++.. ...+.+++++|+||++. +
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWE 92 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCccccccCcHHH
Confidence 478899999 999999999999999999999999999998 999999988754 23455678999999864 2
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+.... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~ 167 (220)
T cd03265 93 NLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR 167 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 23221110 011122334567889999988778888999 999999999999999 99999999 7778886544
No 36
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.9e-29 Score=220.73 Aligned_cols=142 Identities=14% Similarity=0.077 Sum_probs=114.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++......++++.++|+||++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 97 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV 97 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcH
Confidence 3578899999 999999999999999999999999999998 999999998865555666778999999863
Q ss_pred -HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 -~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... .....+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 174 (274)
T PRK13647 98 WDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ 174 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 333332111 011112234567789999998888999999 999999999999999 99999999 7777776543
No 37
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.2e-30 Score=216.09 Aligned_cols=144 Identities=20% Similarity=0.175 Sum_probs=117.3
Q ss_pred CCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---
Q 027509 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--- 138 (222)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--- 138 (222)
+|.....++.+++|. ++|+++||+|||||||||+||+|.+++.|+ |.|+++|.+.. ..+...+++||.+|.+..
T Consensus 10 ~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~-~~p~~vrr~IGVl~~e~glY~ 88 (245)
T COG4555 10 SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTV-RDPSFVRRKIGVLFGERGLYA 88 (245)
T ss_pred hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccc-cChHHHhhhcceecCCcChhh
Confidence 444434477899999 999999999999999999999999999998 99999999985 456677889999996543
Q ss_pred -----HHHHhcCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 -----RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 -----~~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+|+.+.+. ..+.-.+..++..++.+.|++...+|+.+.+ |.||||||+|||||+ +|++|||| |++|+|+-
T Consensus 89 RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~ 167 (245)
T COG4555 89 RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIR 167 (245)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHH
Confidence 34433221 1222233446677788999999999999999 999999999999999 99999999 88899853
No 38
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.4e-29 Score=215.43 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=111.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---Hh-hccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~~-~~ig~v~Q~~~----- 138 (222)
.++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+ ++ +.++|+||++.
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 478899999 999999999999999999999999999998 99999999886554432 22 57999999864
Q ss_pred ---HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+.... .....+...++.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 103 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 103 TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 333332110 111122335677889999998778888888 999999999999999 99999999 7778886544
No 39
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.96 E-value=2.1e-29 Score=213.49 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=110.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---Hh-hccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~~-~~ig~v~Q~~~----- 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ ++ +.++|+||++.
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 478899999 999999999999999999999999999998 99999999886544332 23 57999999864
Q ss_pred ---HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+.... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+||||| |+.|+|...+
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 333322110 111122334567789999988778888888 999999999999999 99999999 6668886543
No 40
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.96 E-value=2.7e-29 Score=214.85 Aligned_cols=141 Identities=23% Similarity=0.176 Sum_probs=111.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~-------- 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++ +..++|+||++.
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 477899999 999999999999999999999999999998 999999998865444443 356999999864
Q ss_pred HHHHhcCCCCc-----------chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 RAVETGGCPHA-----------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ~~i~~g~~~~~-----------~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++..... ...+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 173 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 34433221110 0122334567889999988778888889 999999999999999 99999999 7778
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 174 LD~~~~ 179 (236)
T cd03219 174 LNPEET 179 (236)
T ss_pred CCHHHH
Confidence 886544
No 41
>PRK10908 cell division protein FtsE; Provisional
Probab=99.96 E-value=3.4e-29 Score=212.83 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=110.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~------ 138 (222)
.++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+.. .+++.++|+||++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT 95 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence 478899999 999999999999999999999999999998 9999999988643332 24578999999864
Q ss_pred --HHHHhcCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 --~~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.+... ......+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (222)
T PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172 (222)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 23332211 0111122234566788999988778888888 999999999999999 99999999 677777654
No 42
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.4e-29 Score=220.05 Aligned_cols=141 Identities=14% Similarity=0.048 Sum_probs=115.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++......+++++++|+||++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 378899999 999999999999999999999999999998 999999999865555566778999999863
Q ss_pred HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~ 176 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 3343331111 11222335677889999998888999999 999999999999999 99999999 7778886544
No 43
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.96 E-value=1.9e-29 Score=213.60 Aligned_cols=141 Identities=18% Similarity=0.064 Sum_probs=111.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ..++++.++|+||++.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcCCccccCCHH
Confidence 4578899999 999999999999999999999999999998 9999999987543 3455677999999864
Q ss_pred HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+.... .....+....+.++++.+++....++.+.+ |+||+||++|||||+ +|++|||| |+.|+|...+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 169 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHH
Confidence 233221110 011112234567788999988778888888 999999999999999 99999999 7778876544
No 44
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.5e-29 Score=213.96 Aligned_cols=141 Identities=19% Similarity=0.123 Sum_probs=111.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~------ 138 (222)
+++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++...... ..++.++|+||++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 578899999 999999999999999999999999999998 9999999988654432 23567999999864
Q ss_pred --HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 --~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... ..........+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHH
Confidence 333322110 111122234567789999988878888888 999999999999999 99999999 6668886543
No 45
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.1e-29 Score=220.61 Aligned_cols=140 Identities=19% Similarity=0.142 Sum_probs=111.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC--hHHHhhccEEecCchH-------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~--~~e~~~~ig~v~Q~~~------- 138 (222)
.++++++|+ .+||+++|+|||||||||||++|+|+++|+ |+|.++|.++.... ...+++.++|+||++.
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 578999999 999999999999999999999999999998 99999999886532 2456678999999863
Q ss_pred --HHHHhcCCC-CcchHHHHHHHHHHHHhcCCc--ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 --RAVETGGCP-HAAIREDISINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 --~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~--~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++... .....+....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+|+||| |++|+|...
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 233332111 112222335677889999986 567888899 999999999999999 99999999 777787654
No 46
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.96 E-value=4e-29 Score=210.49 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=111.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC--CChHHHhhccEEecCchH-------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~------- 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. .....+++.++|+||++.
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence 477899999 999999999999999999999999999998 999999988742 123445678999999864
Q ss_pred -HHHHhcCC--CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 -RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 -~~i~~g~~--~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.. ......+..+.+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 171 (213)
T cd03262 94 LENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171 (213)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 33332211 0111122334567788999988778899999 999999999999999 99999999 6678886543
No 47
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=9.9e-30 Score=231.62 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=116.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++||+++|+|||||||||||++|+|+++|+ |+|.++|.++..... .+++++||||++. +
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~~~lfp~~tv~e 97 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQSYALFPHMSLGE 97 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCCHHH
Confidence 467889999 999999999999999999999999999998 999999999865443 2468999999865 5
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccCCC
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGP 213 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~~~ 213 (222)
|+.++... .....+...++.++++.+++....++++.+ ||||||||+|||||+ +|+|+||| |++++|...|..+
T Consensus 98 Ni~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l 175 (351)
T PRK11432 98 NVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175 (351)
T ss_pred HHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 55554221 111223345678899999998888999999 999999999999999 99999999 7778887665443
No 48
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.96 E-value=2.2e-29 Score=212.97 Aligned_cols=140 Identities=19% Similarity=0.112 Sum_probs=112.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ...++++.++|+||++. +
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCHHH
Confidence 578899999 999999999999999999999999999998 999999998853 34556678999999864 3
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+.... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 172 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMAT 172 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHH
Confidence 33221110 011122335667789999998878888888 999999999999999 99999999 7778876544
No 49
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.6e-29 Score=214.77 Aligned_cols=141 Identities=18% Similarity=0.108 Sum_probs=112.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.++|+||++. +
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence 467899999 999999999999999999999999999998 999999998865555555678999999864 3
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcc--cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~--~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++... .....+..+.+.++++.+++.. ..++.+.+ |+||+||++|||||+ +|+|+||| |++|+|...+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 171 (242)
T cd03295 95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 33332110 1111223345678899999875 67888888 999999999999999 99999999 7778886644
No 50
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.1e-29 Score=219.74 Aligned_cols=141 Identities=18% Similarity=0.069 Sum_probs=112.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC-hHHHhhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~-~~e~~~~ig~v~Q~~~-------- 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ...+++.++|+||++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 478899999 999999999999999999999999999998 99999999885443 2455678999999863
Q ss_pred -HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 -~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ....+..+.+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~ 172 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 2232221111 11122335567789999998888899999 999999999999999 99999999 7778886554
No 51
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.96 E-value=4.1e-29 Score=210.83 Aligned_cols=136 Identities=24% Similarity=0.271 Sum_probs=108.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++. ..+++++|+||++.
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEeccccccccCCCCcH
Confidence 477899999 999999999999999999999999999998 99999998763 34567999999753
Q ss_pred -HHHHhcCCCCc-----chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 -RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 -~~i~~g~~~~~-----~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.+...... ...+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 167 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 33333221110 0122334567788999988778888889 999999999999999 99999999 777888654
Q ss_pred c
Q 027509 210 K 210 (222)
Q Consensus 210 K 210 (222)
+
T Consensus 168 ~ 168 (213)
T cd03235 168 Q 168 (213)
T ss_pred H
Confidence 4
No 52
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=3.1e-29 Score=228.49 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=116.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+ .+++++||||++. +
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig~v~Q~~~lfp~~tv~e 95 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYGIVFQSYALFPNLTVAD 95 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCcHHH
Confidence 367889999 999999999999999999999999999998 999999998865443 2578999999865 5
Q ss_pred HHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccCCC
Q 027509 140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGP 213 (222)
Q Consensus 140 ~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~~~ 213 (222)
|+.++.... ....+...++.++++.+++....++.+.+ ||||||||+|||||+ +|+++||| |++++|.+.|..+
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l 173 (353)
T TIGR03265 96 NIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL 173 (353)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 555542211 11223345778899999999999999999 999999999999999 99999999 6678887765443
No 53
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.2e-29 Score=226.57 Aligned_cols=142 Identities=17% Similarity=0.108 Sum_probs=113.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---HhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~~~~ig~v~Q~~~----- 138 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ ++++++|+||++.
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 3578899999 999999999999999999999999999998 99999999886544333 3568999999864
Q ss_pred ---HHHHhcCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.. ......+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 34433211 1111122335667789999998888899999 999999999999999 99999999 6678886544
No 54
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=5.1e-29 Score=227.10 Aligned_cols=141 Identities=17% Similarity=0.143 Sum_probs=116.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++||+++|+|||||||||||++|+|+++|+ |+|.++|.++..... .+++++||||++. +
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYALFRHMTVFD 93 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcccCCCCcHHH
Confidence 478899999 999999999999999999999999999998 999999998865432 3467999999864 5
Q ss_pred HHHhcCCC-----CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 140 AVETGGCP-----HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 140 ~i~~g~~~-----~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
|+.++... .....+..+++.++++.+++....++++.+ ||||||||+|||||+ +|+|+||| |++++|...|.
T Consensus 94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~ 173 (353)
T PRK10851 94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173 (353)
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 55554321 111223345778899999998889999999 999999999999999 99999999 77888876654
Q ss_pred C
Q 027509 212 G 212 (222)
Q Consensus 212 ~ 212 (222)
.
T Consensus 174 ~ 174 (353)
T PRK10851 174 E 174 (353)
T ss_pred H
Confidence 3
No 55
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.96 E-value=6e-29 Score=211.89 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=111.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---H-hhccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~-~~~ig~v~Q~~~----- 138 (222)
.++++++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ . ++.++|+||++.
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 478899999 999999999999999999999999999998 99999999886554432 2 257999999864
Q ss_pred ---HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... .....+..+.+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 333322110 111122345677889999988778888888 999999999999999 99999999 6668886543
No 56
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.2e-29 Score=211.95 Aligned_cols=136 Identities=17% Similarity=0.098 Sum_probs=108.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.. .++.++|+||++. +
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCCHHH
Confidence 578899999 999999999999999999999999999998 999999988742 2467999999864 3
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 167 (220)
T cd03293 93 NVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence 33322110 111122235667789999998778888888 999999999999999 99999999 7778886544
No 57
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.96 E-value=5.4e-29 Score=209.92 Aligned_cols=139 Identities=14% Similarity=0.042 Sum_probs=110.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+. .++.++|+||++. +
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEEEecChhhccCCCHHH
Confidence 478899999 999999999999999999999999999998 999999998754322 2357999999865 3
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~ 166 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR 166 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 33332111 111122334567788999988788899999 999999999999999 99999999 7788886544
No 58
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.7e-29 Score=210.23 Aligned_cols=139 Identities=21% Similarity=0.193 Sum_probs=110.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++| +++|+|||||||||||++|+|+++|+ |+|.++|.++.... .++++.++|+||++. +
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCcccccCCHHH
Confidence 478899999 889 99999999999999999999999998 99999999886543 556678999999864 2
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+.... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 166 (211)
T cd03264 92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEER 166 (211)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 32221100 011112234566788999988777888888 999999999999999 99999999 7778886644
No 59
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.96 E-value=5.4e-29 Score=210.90 Aligned_cols=140 Identities=19% Similarity=0.144 Sum_probs=108.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~-------- 138 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+. ++.++|+||++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 477899999 999999999999999999999999999998 999999998865544443 457999999864
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhc-CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l-~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+...... ..+....+.++++.+ .+....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 94 ~~l~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 168 (222)
T cd03224 94 ENLLLGAYARR-RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIV 168 (222)
T ss_pred HHHHHHhhhcC-chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHH
Confidence 33333211111 111223345566666 355667888888 999999999999999 99999999 7788886654
No 60
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=7.7e-29 Score=224.89 Aligned_cols=140 Identities=19% Similarity=0.180 Sum_probs=113.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|+++||+|||||||||||++|+|+++|+ |+|.++|.++... ..+.++.++|+||++.
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig~v~q~~~~~~~~tv~ 132 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-ARLARARIGVVPQFDNLDLEFTVR 132 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-hHHHhccEEEEeCCccCCCCCcHH
Confidence 3478899999 999999999999999999999999999998 9999999988543 3456778999999864
Q ss_pred HHHHh-cCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ~~i~~-g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.+ +........+....+.++++.+++....++.+.+ |+|||||++||+||+ +|+|+||| |+.|+|...
T Consensus 133 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~ 207 (340)
T PRK13536 133 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207 (340)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 34432 1111111222334566788999998888999999 999999999999999 99999999 788888543
No 61
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.2e-29 Score=211.13 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=109.6
Q ss_pred CCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC------CCcEEEeeccCCCC--ChHHHhhccEEecCch
Q 027509 67 RRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEER 137 (222)
Q Consensus 67 ~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p------~G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~ 137 (222)
+...++.+++++ +++++++||||+|||||||||+++.+... +|+|.++|.+|... +..++|+++|+|||.|
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 345578899999 99999999999999999999999998653 29999999999764 4678899999999988
Q ss_pred H-------HHHHhcCCCCcch-HHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCC
Q 027509 138 I-------RAVETGGCPHAAI-REDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSG 203 (222)
Q Consensus 138 ~-------~~i~~g~~~~~~~-~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~ 203 (222)
+ +|+.+|...+... ++..+.+...|+...+. +.++..... |||||||++|||||+ +|+|||||||+
T Consensus 98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 6 7777774432211 22223445555544442 345555556 999999999999999 99999999777
Q ss_pred CCCCC
Q 027509 204 GDKIP 208 (222)
Q Consensus 204 G~d~p 208 (222)
+--+|
T Consensus 178 SALDP 182 (253)
T COG1117 178 SALDP 182 (253)
T ss_pred cccCc
Confidence 76655
No 62
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=217.56 Aligned_cols=140 Identities=16% Similarity=0.032 Sum_probs=114.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------- 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 100 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ 100 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence 478899999 999999999999999999999999999998 999999999876555566778999999872
Q ss_pred HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+||||| |+.|+|...
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~ 175 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRG 175 (279)
T ss_pred HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 3333321111 11222335677889999998888999999 999999999999999 99999999 777777543
No 63
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.9e-29 Score=217.30 Aligned_cols=141 Identities=16% Similarity=0.077 Sum_probs=113.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
.+++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.++|+||++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 101 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATV 101 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccH
Confidence 3578899999 999999999999999999999999999998 999999998865444566778999999863
Q ss_pred -HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 -~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++... .....+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~ 177 (271)
T PRK13632 102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKG 177 (271)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 233322111 111122234567788999998888999999 999999999999999 99999999 777888654
No 64
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=9.8e-29 Score=210.84 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=111.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~-------- 138 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+.... ++.++|+||++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 477899999 999999999999999999999999999998 999999988765444333 356999999864
Q ss_pred HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+||||| |+.|+|...+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 169 (232)
T cd03218 94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAV 169 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 3333321111 11112234566788999988778888888 999999999999999 99999999 7788886543
No 65
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.96 E-value=1.2e-28 Score=206.52 Aligned_cols=140 Identities=16% Similarity=0.123 Sum_probs=109.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh---H-HHhhccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---G-EFLMRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~---~-e~~~~ig~v~Q~~~----- 138 (222)
.++++++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++..... . .+++.++|++|++.
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence 478899999 999999999999999999999999999998 999999998643221 2 34567999999865
Q ss_pred ---HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ---~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.+..... ....+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |++|+|...
T Consensus 92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 3333321100 11122335667789999988788888889 999999999999999 99999999 777887443
No 66
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.96 E-value=9.8e-29 Score=209.86 Aligned_cols=141 Identities=18% Similarity=0.150 Sum_probs=108.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh---HHHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~---~e~~~~ig~v~Q~~~------ 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+. ..+++.++|+||++.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 578899999 999999999999999999999999999998 999999998865432 345678999999972
Q ss_pred ----HHHHhcCCCC-cchH-HHHHH-HHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 ----RAVETGGCPH-AAIR-EDISI-NLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 ----~~i~~g~~~~-~~~~-~~~~~-~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+++.+..... .... +.... +.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|.
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 178 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence 2332221111 0111 11122 24678888884 467888888 999999999999999 99999999 7778886
Q ss_pred Ccc
Q 027509 208 PRK 210 (222)
Q Consensus 208 p~K 210 (222)
..+
T Consensus 179 ~~~ 181 (228)
T cd03257 179 SVQ 181 (228)
T ss_pred HHH
Confidence 544
No 67
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-28 Score=217.42 Aligned_cols=142 Identities=20% Similarity=0.116 Sum_probs=112.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCC----ChHHHhhccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~----~~~e~~~~ig~v~Q~~~----- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++... ...+++++|+|+||++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 478999999 999999999999999999999999999998 9999999988542 22456778999999862
Q ss_pred ----HHHHhcCCC-CcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ----~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++... .....+....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...
T Consensus 101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~ 180 (286)
T PRK13646 101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180 (286)
T ss_pred hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 333332111 111222335677889999986 567888888 999999999999999 99999999 777887654
Q ss_pred cC
Q 027509 210 KG 211 (222)
Q Consensus 210 K~ 211 (222)
+.
T Consensus 181 ~~ 182 (286)
T PRK13646 181 KR 182 (286)
T ss_pred HH
Confidence 43
No 68
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.96 E-value=4.7e-29 Score=209.80 Aligned_cols=138 Identities=17% Similarity=0.061 Sum_probs=110.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++... .++++.++|+||++.
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCccCccCcHH
Confidence 3578899999 999999999999999999999999999998 9999999887542 345667999999864
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
+++.+...... . ....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+.
T Consensus 91 e~l~~~~~~~~-~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 163 (208)
T cd03268 91 ENLRLLARLLG-I--RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIK 163 (208)
T ss_pred HHHHHHHHhcC-C--cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHH
Confidence 23322211110 0 123566788999988778888888 999999999999999 99999999 77788866543
No 69
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-28 Score=216.25 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=112.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++.+++|+ .+||+++|+|+||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|+||++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV 96 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccH
Confidence 3478899999 999999999999999999999999999998 999999998865445566778999999863
Q ss_pred -HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 -~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~ 172 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 233222111 111122234567789999998888999999 999999999999999 99999999 666888543
No 70
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=7.3e-29 Score=220.69 Aligned_cols=141 Identities=21% Similarity=0.134 Sum_probs=121.4
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH----hhccEEecCchH------
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------ 138 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~----~~~ig~v~Q~~~------ 138 (222)
.+++.+|+ +.|||+.|+|-+|||||||+|+|++++.|+ |+|+++|.++...+.+++ ++++++|||.+.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 56889999 999999999999999999999999999999 999999999988887665 347999999865
Q ss_pred --HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCCccC
Q 027509 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIPRKG 211 (222)
Q Consensus 139 --~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p~K~ 211 (222)
+|+.+|..- .....+..+++.++|+.+++..+.++++.+ ||||||||.|||||+ +|+|+++||+.+--+|.-.
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR 200 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR 200 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence 555555332 122244557889999999999999999999 999999999999999 9999999999988877643
No 71
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.96 E-value=1.3e-28 Score=219.50 Aligned_cols=140 Identities=19% Similarity=0.176 Sum_probs=111.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ..+.+++++|+||++. +
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e 96 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVPQFDNLDPEFTVRE 96 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEeccccCCcCCcHHH
Confidence 478899999 999999999999999999999999999998 9999999987532 3455678999999864 3
Q ss_pred HHHhc-CCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETG-GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g-~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+. ........+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |++|+|...+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 171 (303)
T TIGR01288 97 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171 (303)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 33221 111111122234556788889988888899999 999999999999999 99999999 7788886543
No 72
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-28 Score=218.12 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=111.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC----CChHHHhhccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~----~~~~e~~~~ig~v~Q~~~----- 138 (222)
.++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|+++.. .....++++++|+||++.
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 478999999 999999999999999999999999999998 999999998742 223455678999999862
Q ss_pred ----HHHHhcCCCC-cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 ----RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ----~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++.... ....+..+.+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 3333332111 12223335677889999986 567888889 999999999999999 99999999 777777544
Q ss_pred c
Q 027509 210 K 210 (222)
Q Consensus 210 K 210 (222)
+
T Consensus 181 ~ 181 (290)
T PRK13634 181 R 181 (290)
T ss_pred H
Confidence 3
No 73
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.2e-28 Score=211.80 Aligned_cols=139 Identities=18% Similarity=0.123 Sum_probs=109.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+. .++.++|+||++. +
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCcccCCCCHHH
Confidence 478899999 999999999999999999999999999998 999999988754322 2457999999864 3
Q ss_pred HHHhcCCCC-c----chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPH-A----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~-~----~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++.... . ...+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 172 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 333321111 0 1122234566788999988778888888 999999999999999 99999999 7778876543
No 74
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.96 E-value=1.5e-28 Score=209.30 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=109.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc-----CCC-CcEEEeeccCCCCC--hHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL-----RDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll-----~p~-G~I~i~g~di~~~~--~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|++ +|+ |+|.++|.++...+ ...+++.++|+||++.
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 478899999 999999999999999999999999999 887 99999999875543 3445678999999864
Q ss_pred -----HHHHhcCCCCc-chH-HHHHHHHHHHHhcCCcccccCc--CCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 -----RAVETGGCPHA-AIR-EDISINLGPLEELSNLFKADLL--LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 -----~~i~~g~~~~~-~~~-~~~~~~~~~L~~l~l~~~~d~~--~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++.++..... ... +....+.++++.+++....+.. +.+ |+|||||++|||||+ +|+++||| |+.|+|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 173 (227)
T cd03260 94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173 (227)
T ss_pred cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 33332211110 011 1234567788999887665665 477 999999999999999 99999999 777787
Q ss_pred CCcc
Q 027509 207 IPRK 210 (222)
Q Consensus 207 ~p~K 210 (222)
...+
T Consensus 174 ~~~~ 177 (227)
T cd03260 174 PIST 177 (227)
T ss_pred HHHH
Confidence 6543
No 75
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=7.9e-29 Score=220.73 Aligned_cols=140 Identities=18% Similarity=0.151 Sum_probs=113.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|+++||+|||||||||||++|+|+++|+ |+|.++|.++.. ...++++.++|+||++. +
T Consensus 16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~l~~~~tv~e 94 (301)
T TIGR03522 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVRE 94 (301)
T ss_pred EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCCCCCCCcHHH
Confidence 478899999 999999999999999999999999999998 999999998854 34556778999999865 3
Q ss_pred HHHhcCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+... ......+...++.++++.+++....++.+.. |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~ 169 (301)
T TIGR03522 95 YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL 169 (301)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 3332111 0111122234567789999998888999999 999999999999999 99999999 7888886544
No 76
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-28 Score=217.51 Aligned_cols=140 Identities=18% Similarity=0.119 Sum_probs=111.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCC----ChHHHhhccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~----~~~e~~~~ig~v~Q~~~----- 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ...++++.++|+||++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 478999999 999999999999999999999999999998 9999999987532 23445668999999862
Q ss_pred ----HHHHhcCCC-CcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ----~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++... .....+...++.++++.+++. ...++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 333322111 111122335677889999986 567888999 999999999999999 99999999 777888543
No 77
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=213.13 Aligned_cols=142 Identities=20% Similarity=0.192 Sum_probs=114.1
Q ss_pred CCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH--
Q 027509 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-- 138 (222)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~-- 138 (222)
+|. ...++++++|+ .+||+|||+|||||||||.+.+++|+++|+ |+|.+++.||+..+..++ +..|||+||++.
T Consensus 13 ~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 13 SYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred hhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 344 34577899999 999999999999999999999999999998 999999999988776554 447999999987
Q ss_pred ------HHHHhcCCCCc-c--hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecC-CCCC
Q 027509 139 ------RAVETGGCPHA-A--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVS-GGDK 206 (222)
Q Consensus 139 ------~~i~~g~~~~~-~--~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t-~G~d 206 (222)
+|+..-..... . ..+......++|++|.+....+..... |||||+|++|||||+ +|+.++|||| .|.|
T Consensus 92 r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVD 171 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171 (243)
T ss_pred hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 33332211111 1 122334566899999999999998888 999999999999999 9999999954 5665
No 78
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=9.8e-29 Score=226.91 Aligned_cols=142 Identities=14% Similarity=0.075 Sum_probs=115.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+. +++++||||++. +
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~lfp~ltv~e 105 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFE 105 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEEEecCcccCCCCCHHH
Confidence 367889999 999999999999999999999999999998 9999999998654432 468999999865 4
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccCCC
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGP 213 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~~~ 213 (222)
|+.++... .....+....+.++++.+++....++++.+ ||||||||+|||||+ +|+||||| |++++|...|..+
T Consensus 106 Ni~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l 183 (375)
T PRK09452 106 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183 (375)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 55544221 111122335677889999999889999999 999999999999999 99999999 7778887665543
No 79
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.7e-28 Score=215.11 Aligned_cols=141 Identities=17% Similarity=0.082 Sum_probs=110.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH----hhccEEecCchH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI---- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~----~~~ig~v~Q~~~---- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+ ++.++|+||++.
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 116 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence 3467899999 999999999999999999999999999998 999999988755433222 357999999864
Q ss_pred ----HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 ----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ----~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...
T Consensus 117 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~ 195 (269)
T cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI 195 (269)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 3333221100 11122234567789999988888999999 999999999999999 99999999 777887653
No 80
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2e-28 Score=216.33 Aligned_cols=142 Identities=16% Similarity=0.061 Sum_probs=113.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC--CChHHHhhccEEecCchH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI------ 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~------ 138 (222)
..++++++|+ .+||+++|+||||||||||+++|+|+++|+ |+|.++|.++.. .+..++++.++|+||++.
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 98 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA 98 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence 3478899999 999999999999999999999999999998 999999998742 223456678999999862
Q ss_pred ---HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... .....+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |++|+|...+
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 333332111 111222335677789999998888999999 999999999999999 99999999 7778885443
No 81
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-28 Score=214.70 Aligned_cols=141 Identities=17% Similarity=0.162 Sum_probs=113.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++......++++.++|+||++. +
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH
Confidence 578899999 999999999999999999999999999998 999999988765555566678999999743 4
Q ss_pred HHHhcCCCCcc----h-HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAA----I-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~----~-~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++...... . .+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (265)
T PRK10575 105 LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 44443211100 0 12234567788999988778889999 999999999999999 99999999 7788886643
No 82
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.95 E-value=1.4e-28 Score=210.96 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=111.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++..... ..++.++|+||++. +
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEEEeCCCCCCcccCcHHH
Confidence 477899999 999999999999999999999999999998 999999988754433 33457999999864 3
Q ss_pred HHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 140 ~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
++.+..... ....+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~ 169 (236)
T TIGR03864 94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRA 169 (236)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHH
Confidence 333221111 11122334567788999988778888888 999999999999999 99999999 77888866543
No 83
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-28 Score=225.70 Aligned_cols=140 Identities=16% Similarity=0.034 Sum_probs=113.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .+++++|+||++. +
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEEEeCCcccCCCCCHHH
Confidence 467899999 999999999999999999999999999998 999999998864433 2467999999864 4
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
|+.++... .....+...++.++++.+++....++.+.+ ||||||||+|||||+ +|+||||| |++++|...+.
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~ 170 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 45443211 111123335677889999998888999999 999999999999999 99999999 66788865543
No 84
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-28 Score=214.05 Aligned_cols=140 Identities=21% Similarity=0.215 Sum_probs=113.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++. +
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 100 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQE 100 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHH
Confidence 478899999 999999999999999999999999999998 999999998865555566678999999864 3
Q ss_pred HHHhcCCCCc----ch-HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 140 AVETGGCPHA----AI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 140 ~i~~g~~~~~----~~-~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
++.++..... .. ......+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |++|+|...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 101 LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 4444321110 01 22334567788999988778899999 999999999999999 99999999 667888653
No 85
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1e-28 Score=208.06 Aligned_cols=137 Identities=21% Similarity=0.117 Sum_probs=108.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ..++.++|+||++. +
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEeccCCcCCcCCcHHH
Confidence 467889999 999999999999999999999999999998 999999987732 34567999999864 3
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+.... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~ 164 (210)
T cd03269 90 QLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV 164 (210)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 33322100 011122334567788999988777888888 999999999999999 99999999 6668886544
No 86
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=5.1e-29 Score=214.74 Aligned_cols=136 Identities=20% Similarity=0.152 Sum_probs=115.3
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHh-hccEEecCchH--------H
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI--------R 139 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~-~~ig~v~Q~~~--------~ 139 (222)
++++++|+ .+||+++||||||||||||+++|+|+++|+ |+|.+.|.+|+..++.++. ..|+.-||.+. +
T Consensus 19 Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlE 98 (250)
T COG0411 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLE 98 (250)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHH
Confidence 88999999 999999999999999999999999999999 9999999999988876654 46888899775 6
Q ss_pred HHHhcCCCC-------------cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 140 AVETGGCPH-------------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 140 ~i~~g~~~~-------------~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
|+.++...+ ...++..+++.++|+.+++....+....+ |+|||+|++|||||+ +|++++|| |..
T Consensus 99 Nv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaA 178 (250)
T COG0411 99 NVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178 (250)
T ss_pred HHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccC
Confidence 665542211 01233457788899999999999999999 999999999999999 99999999 455
Q ss_pred CCC
Q 027509 204 GDK 206 (222)
Q Consensus 204 G~d 206 (222)
|+.
T Consensus 179 Gln 181 (250)
T COG0411 179 GLN 181 (250)
T ss_pred CCC
Confidence 554
No 87
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.95 E-value=1.9e-28 Score=221.48 Aligned_cols=141 Identities=14% Similarity=0.124 Sum_probs=111.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~----- 138 (222)
..++++++|+ .+||+++|+|+||||||||+++|+|+++|+ |+|.++|.++...... .++++++||||++.
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 3478899999 999999999999999999999999999998 9999999998665433 34568999999973
Q ss_pred -----HHHHhcCCC---CcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 -----RAVETGGCP---HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 -----~~i~~g~~~---~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++.+.... .....+....+.++++.+++. ...++++.+ ||||+|||+|||||+ +|+|||+| |++++|
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 223221110 112223345667889999984 467899999 999999999999999 99999999 677888
Q ss_pred CCc
Q 027509 207 IPR 209 (222)
Q Consensus 207 ~p~ 209 (222)
...
T Consensus 194 ~~~ 196 (331)
T PRK15079 194 VSI 196 (331)
T ss_pred HHH
Confidence 543
No 88
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=2.7e-28 Score=210.46 Aligned_cols=142 Identities=17% Similarity=0.126 Sum_probs=111.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC--------hHHHhhccEEecCchH-
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--------DGEFLMRNGALPEERI- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~--------~~e~~~~ig~v~Q~~~- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.... ...+++.++|+||++.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 478899999 999999999999999999999999999998 99999998875321 1344568999999864
Q ss_pred -------HHHHhcCC--CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 -------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 -------~~i~~g~~--~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++.++.. ......+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD 176 (250)
T PRK11264 97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176 (250)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 33332211 0111112234567788999988777888888 999999999999999 99999999 778888
Q ss_pred CCccC
Q 027509 207 IPRKG 211 (222)
Q Consensus 207 ~p~K~ 211 (222)
...+.
T Consensus 177 ~~~~~ 181 (250)
T PRK11264 177 PELVG 181 (250)
T ss_pred HHHHH
Confidence 66543
No 89
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3e-28 Score=205.31 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=108.0
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HHHHh
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~i~~ 143 (222)
+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++..... .++.++|+||++. +++.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhc
Confidence 78999 999999999999999999999999999998 999999998864332 2467999999865 34433
Q ss_pred cCCCCcch-HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 144 GGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 144 g~~~~~~~-~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+....... .+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~ 164 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 32211111 12334567789999988778888889 999999999999999 99999999 7778886543
No 90
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-28 Score=225.69 Aligned_cols=142 Identities=15% Similarity=0.066 Sum_probs=116.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+ .+++++|+||++. +
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~vfQ~~~lfp~ltv~e 110 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINMMFQSYALFPHMTVEQ 110 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCCccCCCCCHHH
Confidence 467889999 999999999999999999999999999998 999999998865432 3568999999875 5
Q ss_pred HHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccCCC
Q 027509 140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGP 213 (222)
Q Consensus 140 ~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~~~ 213 (222)
|+.++.... ....+...++.++++.+++....++.+.+ ||||||||+|||||+ +|+||||| |++++|...|..+
T Consensus 111 Ni~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l 188 (377)
T PRK11607 111 NIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM 188 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 555542211 11223345677899999998888999999 999999999999999 99999999 7778887666443
No 91
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=2.2e-28 Score=210.10 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=111.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC--hHHHhhccEEecCchH-------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~--~~e~~~~ig~v~Q~~~------- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.... ...+++.++|+||++.
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 478899999 999999999999999999999999999998 99999999875432 2344668999999864
Q ss_pred -HHHHhcCCC--CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 -RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 -~~i~~g~~~--~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 172 (240)
T PRK09493 95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172 (240)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 333332110 111122334567889999988778888888 999999999999999 99999999 7778886543
No 92
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.7e-28 Score=212.21 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=110.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC--CChHHHhhccEEecCchH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI------ 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~------ 138 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. .....+++.++|+||++.
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT 93 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence 3478899999 999999999999999999999999999998 999999998742 222345668999999863
Q ss_pred ---HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~ 172 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172 (271)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 122221110 111122234566788888988778888888 999999999999999 99999999 7778875543
No 93
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.95 E-value=2.3e-28 Score=208.73 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=111.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
..++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|+||++. +
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 99 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYD 99 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHH
Confidence 3578899999 999999999999999999999999999998 999999988865555566678999999864 3
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+...... .......+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 100 nl~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (225)
T PRK10247 100 NLIFPWQIRN-QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNK 173 (225)
T ss_pred HHHhHHhhcC-CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 3332211000 111234556788999885 467888888 999999999999999 99999999 7778886543
No 94
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.2e-28 Score=211.74 Aligned_cols=141 Identities=18% Similarity=0.116 Sum_probs=112.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|+||++.
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 467899999 999999999999999999999999999998 999999998865555566778999999863
Q ss_pred HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ....+....+.++++.+++....+..+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~ 178 (269)
T PRK13648 103 YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178 (269)
T ss_pred HHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 2222221111 11122234566788999988888888888 999999999999999 99999999 7778876543
No 95
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.9e-28 Score=210.03 Aligned_cols=138 Identities=18% Similarity=0.126 Sum_probs=109.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------HH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~ 140 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|+||++. ++
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDN 96 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHH
Confidence 477899999 999999999999999999999999999998 999999998865445556678999999865 22
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+.++.... . .....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 97 l~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 167 (241)
T PRK14250 97 IEYGPMLK-G--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167 (241)
T ss_pred Hhcchhhc-C--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 22211111 1 1123566788888886 466788888 999999999999999 99999999 7778876543
No 96
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.3e-28 Score=212.16 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=112.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ ++|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+..++++.++|+||++. +
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 95 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE 95 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH
Confidence 478899999 999999999999999999999999999998 999999988755445556677999999864 3
Q ss_pred HHHhcCCCC---cc--hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPH---AA--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~---~~--~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++.... .. ..+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (255)
T PRK11231 96 LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174 (255)
T ss_pred HHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 444432110 00 122334567788888988778899999 999999999999999 99999999 7778886544
No 97
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.1e-28 Score=214.92 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=110.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC----CChHHHhhccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~----~~~~e~~~~ig~v~Q~~~----- 138 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++.. ....++++.++||||++.
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 478899999 999999999999999999999999999998 999999998742 223456778999999862
Q ss_pred ----HHHHhcCCCC-cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 ----RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ----~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++.... ....+...++.++++.+++. ...++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~ 179 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence 3333332111 11122335667888999985 467888888 999999999999999 99999999 777777543
No 98
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.2e-28 Score=209.17 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=111.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH-HhhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e-~~~~ig~v~Q~~~-------- 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ .++.++|+||++.
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVY 96 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHH
Confidence 478899999 999999999999999999999999999998 99999999886544433 3567999999864
Q ss_pred HHHHhcCCCC--cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~--~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+..... ....+....+.++++.+++....+..+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (241)
T PRK10895 97 DNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISV 173 (241)
T ss_pred HHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 3333321111 11122335667788999887777888888 999999999999999 99999999 6678886544
No 99
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.7e-28 Score=224.74 Aligned_cols=141 Identities=18% Similarity=0.106 Sum_probs=113.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH----hhccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~----~~~ig~v~Q~~~----- 138 (222)
..+++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++ +++++|+||++.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 468899999 999999999999999999999999999998 999999999865544332 347999999864
Q ss_pred ---HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+|+.++... .....+....+.++++.+++....++++.+ |+|||||++|||||+ +|+||||| |++++|...+
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 444443211 111122335677889999998888999999 999999999999999 99999999 6677775543
No 100
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.4e-28 Score=216.84 Aligned_cols=140 Identities=17% Similarity=0.108 Sum_probs=110.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC------------------------CCh
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------------------------KED 123 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~------------------------~~~ 123 (222)
.++++++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.+++.++.. ...
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 478899999 999999999999999999999999999998 999998765421 123
Q ss_pred HHHhhccEEecCchH---------HHHHhcCCCC-cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHH
Q 027509 124 GEFLMRNGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSREL 191 (222)
Q Consensus 124 ~e~~~~ig~v~Q~~~---------~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL 191 (222)
.++++.+|||||++. +++.++.... ....+..+++.++++.+++. ...++.+.+ |+|||||++|||||
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 455678999999752 3343332111 11123345678899999996 578889999 99999999999999
Q ss_pred c-CCCeEEEe-cCCCCCCCc
Q 027509 192 A-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 192 ~-~p~IlILD-~t~G~d~p~ 209 (222)
+ +|+|+||| |+.|+|...
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~ 200 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQG 200 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHH
Confidence 9 99999999 667777543
No 101
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.9e-28 Score=214.01 Aligned_cols=142 Identities=15% Similarity=0.013 Sum_probs=113.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC-hHHHhhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~-~~e~~~~ig~v~Q~~~-------- 138 (222)
.++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.... ..++++.++|+||++.
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence 478899999 999999999999999999999999999998 99999999885432 2455678999999863
Q ss_pred -HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 139 -~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
+++.++.... ....+..+.+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+.
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~ 181 (280)
T PRK13633 104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181 (280)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 2222221111 11122235567789999998888999999 999999999999999 99999999 77888866543
No 102
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=3.6e-28 Score=212.91 Aligned_cols=141 Identities=20% Similarity=0.100 Sum_probs=110.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~------ 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+.. .+++.++|+||++.
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 100 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMN 100 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCC
Confidence 467899999 999999999999999999999999999998 9999999887543332 23567999999864
Q ss_pred --HHHHhcCCCC--cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 --RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 --~~i~~g~~~~--~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 179 (269)
T PRK11831 101 VFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM 179 (269)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 3333321111 11112234566788999998878888989 999999999999999 99999999 7778885543
No 103
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.9e-28 Score=212.88 Aligned_cols=141 Identities=20% Similarity=0.125 Sum_probs=111.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC--CChHHHhhccEEecCchH-------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~------- 138 (222)
.++.+++|+ .+||+++|+||||||||||+++|+|+++|+ |+|.++|.++.. .....+++.|+|+||++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT 95 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence 478899999 999999999999999999999999999998 999999998742 122345678999999863
Q ss_pred --HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 --~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... .....+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 173 (275)
T PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173 (275)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 233322111 111122334567789999998888999999 999999999999999 99999999 7778886544
No 104
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=1.9e-28 Score=204.02 Aligned_cols=132 Identities=20% Similarity=0.158 Sum_probs=113.5
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HHHHhc
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETG 144 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~i~~g 144 (222)
.+++ +.||+++|+||+||||||||++|+|++.|. |.|.++|++.+...+.+ +=++++||+.+ .|+-+|
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhhhhhccccchhhhhhhhhccc
Confidence 4555 789999999999999999999999999998 99999999997765543 56899999987 567777
Q ss_pred CCCCcch-HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCC
Q 027509 145 GCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIP 208 (222)
Q Consensus 145 ~~~~~~~-~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p 208 (222)
..|.... .++.+++..++..+++..+.++++.+ ||||||||++||+|+ +.+|++||||..--.|
T Consensus 96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP 162 (231)
T COG3840 96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (231)
T ss_pred CCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCH
Confidence 7776554 34567788899999999999999999 999999999999999 9999999977765544
No 105
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.95 E-value=3.8e-28 Score=210.87 Aligned_cols=141 Identities=19% Similarity=0.219 Sum_probs=113.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++. +
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD 94 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence 478899999 999999999999999999999999999998 999999998865555555667999999863 4
Q ss_pred HHHhcCCCCc-----chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~-----~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++..... ...+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 173 (256)
T TIGR03873 95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ 173 (256)
T ss_pred HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence 4443321110 1122334667789999988778888999 999999999999999 99999999 7778886544
No 106
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.95 E-value=2.9e-28 Score=222.88 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=114.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-C--CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-K--YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-~--G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
.++++++|+ .+|++++|+|||||||||||++|+|+++| + |+|.++|.++..... .++.|+||||++.
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcccCCCCcH
Confidence 478899999 99999999999999999999999999998 5 999999998864333 3568999999875
Q ss_pred -HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccCC
Q 027509 139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGG 212 (222)
Q Consensus 139 -~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~~ 212 (222)
+|+.++.... ....+...++.++++.+++....++++.+ ||||||||+|||||+ +|+||||| |++++|...|..
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~ 175 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRAN 175 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHH
Confidence 4554442211 11223345678899999999889999999 999999999999999 99999999 777888765543
No 107
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.95 E-value=5.1e-28 Score=203.29 Aligned_cols=135 Identities=13% Similarity=0.041 Sum_probs=108.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+|+||||||||+++|+|+++|+ |+|.++|.++... ...++++++|+||++. +
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e 92 (201)
T cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-RDSIARGLLYLGHAPGIKTTLSVLE 92 (201)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-cHHhhhheEEeccccccCCCcCHHH
Confidence 467899999 999999999999999999999999999998 9999999887543 3456678999998753 3
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+... . . ..+.+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 93 ~l~~~~~--~--~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~ 161 (201)
T cd03231 93 NLRFWHA--D--H-SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161 (201)
T ss_pred HHHhhcc--c--c-cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 3322211 0 0 224566788889888777888888 999999999999999 99999999 7778886543
No 108
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.6e-28 Score=217.04 Aligned_cols=140 Identities=17% Similarity=0.086 Sum_probs=111.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCC----------------ChHHHhhccE
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----------------EDGEFLMRNG 131 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~----------------~~~e~~~~ig 131 (222)
+++.+++|+ ++|++++|+|+||||||||+++|+|+++|+ |+|.++|.++... ...++++.++
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 578999999 999999999999999999999999999998 9999999877432 2345667899
Q ss_pred EecCchH---------HHHHhcCCC-CcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEE
Q 027509 132 ALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (222)
Q Consensus 132 ~v~Q~~~---------~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlI 198 (222)
||||++. +++.++... .....+...++.++++.+++. ...++.+.+ |||||||++|||||+ +|+|||
T Consensus 120 ~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL 199 (320)
T PRK13631 120 MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199 (320)
T ss_pred EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999862 344333211 112223335677889999986 567888888 999999999999999 999999
Q ss_pred Ee-cCCCCCCCc
Q 027509 199 ID-VSGGDKIPR 209 (222)
Q Consensus 199 LD-~t~G~d~p~ 209 (222)
|| |+.|+|...
T Consensus 200 LDEPtsgLD~~~ 211 (320)
T PRK13631 200 FDEPTAGLDPKG 211 (320)
T ss_pred EECCccCCCHHH
Confidence 99 677777543
No 109
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=6e-28 Score=210.35 Aligned_cols=141 Identities=21% Similarity=0.250 Sum_probs=112.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++. +
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 95 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE 95 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence 478899999 999999999999999999999999999998 999999988765555555678999999864 3
Q ss_pred HHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-------CCCeEEEe-cCCCCCCCc
Q 027509 140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 140 ~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-------~p~IlILD-~t~G~d~p~ 209 (222)
++.++.... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~ 175 (258)
T PRK13548 96 VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175 (258)
T ss_pred HHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHH
Confidence 343332211 11122334567788999988778899999 999999999999999 79999999 777887654
Q ss_pred c
Q 027509 210 K 210 (222)
Q Consensus 210 K 210 (222)
+
T Consensus 176 ~ 176 (258)
T PRK13548 176 Q 176 (258)
T ss_pred H
Confidence 3
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=8.8e-28 Score=206.39 Aligned_cols=140 Identities=18% Similarity=0.066 Sum_probs=111.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~-------- 138 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+. ++.++|+||++.
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF 95 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence 478899999 999999999999999999999999999998 999999988765444333 346999999864
Q ss_pred HHHHhcCCCCc---------chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 RAVETGGCPHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 ~~i~~g~~~~~---------~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++.++..... ...+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|
T Consensus 96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD 175 (242)
T TIGR03411 96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT 175 (242)
T ss_pred HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 44444321110 0112345677889999988778888888 999999999999999 99999999 777887
Q ss_pred CCc
Q 027509 207 IPR 209 (222)
Q Consensus 207 ~p~ 209 (222)
...
T Consensus 176 ~~~ 178 (242)
T TIGR03411 176 DEE 178 (242)
T ss_pred HHH
Confidence 554
No 111
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.1e-28 Score=217.83 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=111.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~------ 138 (222)
.++.+++|+ .+||+++|+|+||||||||+++|+|+++|+ |+|.++|.++...+.. .++++|+||||++.
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 478899999 999999999999999999999999999998 9999999998765443 34568999999974
Q ss_pred ----HHHHhcCCC--CcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 ----RAVETGGCP--HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 ----~~i~~g~~~--~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+++...... .....+....+.++|+.+++. ..+++++.+ ||||+||++|||||+ +|+|||+| |++++|..
T Consensus 109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~ 188 (327)
T PRK11308 109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS 188 (327)
T ss_pred cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHH
Confidence 122111000 112223345678899999986 367899999 999999999999999 99999999 77788754
Q ss_pred c
Q 027509 209 R 209 (222)
Q Consensus 209 ~ 209 (222)
.
T Consensus 189 ~ 189 (327)
T PRK11308 189 V 189 (327)
T ss_pred H
Confidence 3
No 112
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=3.2e-28 Score=204.78 Aligned_cols=137 Identities=18% Similarity=0.094 Sum_probs=109.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++... ...+++.++|++|++. +
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~tv~e 93 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ-RDEYHQDLLYLGHQPGIKTELTALE 93 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-hHHhhhheEEeCCccccCcCCcHHH
Confidence 478899999 999999999999999999999999999998 9999999887543 2345667999998753 3
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
++.+..... .. +....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...
T Consensus 94 ~l~~~~~~~-~~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 164 (204)
T PRK13538 94 NLRFYQRLH-GP-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164 (204)
T ss_pred HHHHHHHhc-Cc-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 333221100 00 2234567789999988778888888 999999999999999 99999999 666888654
No 113
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.9e-28 Score=208.18 Aligned_cols=141 Identities=18% Similarity=0.117 Sum_probs=110.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
.++++++|+ ++|++++|+||||||||||+++|+|+++| + |+|.++|.++...+..++++.++|+||++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 478899999 99999999999999999999999999873 5 999999998865555566678999999864
Q ss_pred ----HHHHhcCCCC---cchHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 ----RAVETGGCPH---AAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ----~~i~~g~~~~---~~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... ....+..+.+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+|+||| |+.|
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~ 176 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTAN 176 (250)
T ss_pred CcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 3443332111 01122234567788888874 246788888 999999999999999 99999999 7777
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 177 LD~~~~ 182 (250)
T PRK14247 177 LDPENT 182 (250)
T ss_pred CCHHHH
Confidence 876543
No 114
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.9e-28 Score=211.74 Aligned_cols=142 Identities=15% Similarity=0.034 Sum_probs=113.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------- 138 (222)
.++.+++|+ .+|++++|+|+||||||||+++|+|+++|+ |+|.++|.++......++++.++|+||++.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 478899999 999999999999999999999999999998 999999998865445566778999999863
Q ss_pred HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 139 ~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
+++.++... .....+..+.+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~ 177 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 333322111 111122234567788989988778888888 999999999999999 99999999 77788765443
No 115
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-27 Score=211.72 Aligned_cols=141 Identities=19% Similarity=0.135 Sum_probs=113.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC----CcEEEeeccCCCCChHHHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~----G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------ 138 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++.......+++.++|+||++.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 478899999 999999999999999999999999999885 799999998865555566678999999873
Q ss_pred ---HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... .....+..+++.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 233322111 111122235577789999998888999999 999999999999999 99999999 7788886543
No 116
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.6e-28 Score=206.98 Aligned_cols=141 Identities=17% Similarity=0.167 Sum_probs=109.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCC------ChHHHhhccEEecCchH---
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK------EDGEFLMRNGALPEERI--- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~------~~~e~~~~ig~v~Q~~~--- 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++... .....+++++|+||++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 478899999 999999999999999999999999999998 9999999886311 12344668999999864
Q ss_pred -----HHHHhcCCC--CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 -----RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 -----~~i~~g~~~--~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+++...... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |++|+|..
T Consensus 96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~ 175 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence 233211110 011122234567788999988778888888 999999999999999 99999999 77788765
Q ss_pred cc
Q 027509 209 RK 210 (222)
Q Consensus 209 ~K 210 (222)
.+
T Consensus 176 ~~ 177 (242)
T PRK11124 176 IT 177 (242)
T ss_pred HH
Confidence 33
No 117
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8e-28 Score=211.53 Aligned_cols=140 Identities=17% Similarity=0.111 Sum_probs=108.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCC----ChHHHhhccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~----~~~e~~~~ig~v~Q~~~----- 138 (222)
+++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ....+++.|+|+||++.
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 478899999 999999999999999999999999999998 9999999887542 22445678999999862
Q ss_pred ----HHHHhcCCC-CcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ----~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++... .....+....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+||||| |+.|+|...
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 233222110 011122234566788888886 456888888 999999999999999 99999999 677777543
No 118
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.1e-28 Score=207.77 Aligned_cols=142 Identities=16% Similarity=0.108 Sum_probs=111.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~------- 138 (222)
..++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+.... +..++|+||++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV 97 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence 3578899999 999999999999999999999999999998 999999998865444333 346899999864
Q ss_pred -HHHHhcCCCC---------------c-chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEE
Q 027509 139 -RAVETGGCPH---------------A-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (222)
Q Consensus 139 -~~i~~g~~~~---------------~-~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlIL 199 (222)
+++.++.... . ...+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+||||
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 177 (255)
T PRK11300 98 IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177 (255)
T ss_pred HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4444321100 0 0012234566788899988788899999 999999999999999 9999999
Q ss_pred e-cCCCCCCCcc
Q 027509 200 D-VSGGDKIPRK 210 (222)
Q Consensus 200 D-~t~G~d~p~K 210 (222)
| |++|+|...+
T Consensus 178 DEPt~~LD~~~~ 189 (255)
T PRK11300 178 DEPAAGLNPKET 189 (255)
T ss_pred cCCccCCCHHHH
Confidence 9 7778886543
No 119
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.95 E-value=8.2e-28 Score=204.26 Aligned_cols=142 Identities=16% Similarity=0.163 Sum_probs=112.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~----- 138 (222)
..++++++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++...... .+++.++|+||++.
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 3478899999 999999999999999999999999999998 9999999887543322 34678999999875
Q ss_pred ---HHHHhcCCCC--cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~~~--~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+....+ ....+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 177 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 2333221111 12223345677889999998888888889 999999999999999 99999999 7778886543
No 120
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.95 E-value=4.9e-28 Score=202.59 Aligned_cols=137 Identities=16% Similarity=0.077 Sum_probs=108.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++.... ..+++.++|++|++. +
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 92 (198)
T TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLPGLKPELSALE 92 (198)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCcccccCCcHHH
Confidence 467899999 999999999999999999999999999998 99999998875443 345568999998753 2
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+..... . .....+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 93 ~l~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 163 (198)
T TIGR01189 93 NLHFWAAIH-G--GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV 163 (198)
T ss_pred HHHHHHHHc-C--CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 222211000 0 0123456788888988778888888 999999999999999 99999999 7778886543
No 121
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.95 E-value=1e-27 Score=209.79 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=108.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------- 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++.
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 578899999 999999999999999999999999999998 999999988754333344457999999863
Q ss_pred -HHHHhcCCCC--cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 -RAVETGGCPH--AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 -~~i~~g~~~~--~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+..... ....+..+.+.++++.+++. ...+..+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 185 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence 1222211101 11122234567789999984 566777888 999999999999999 99999999 7778876544
No 122
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.95 E-value=7.8e-28 Score=203.77 Aligned_cols=138 Identities=21% Similarity=0.209 Sum_probs=104.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++. +
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 3578899999 999999999999999999999999999998 999999988754444455678999999864 2
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCc-----------CCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLL-----------LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~-----------~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
++.+.... . ....+.+.++.+++....+.. +.+ |+|||||++|||||+ +|+|+||| |+.|+
T Consensus 97 ~l~~~~~~-~----~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~L 171 (220)
T cd03245 97 NITLGAPL-A----DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAM 171 (220)
T ss_pred HhhcCCCC-C----CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 33222111 1 112334556666665544443 356 999999999999999 99999999 77888
Q ss_pred CCCccC
Q 027509 206 KIPRKG 211 (222)
Q Consensus 206 d~p~K~ 211 (222)
|...+.
T Consensus 172 D~~~~~ 177 (220)
T cd03245 172 DMNSEE 177 (220)
T ss_pred CHHHHH
Confidence 865543
No 123
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.95 E-value=1.2e-27 Score=206.52 Aligned_cols=140 Identities=19% Similarity=0.176 Sum_probs=108.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC------CCcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p------~G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ ++|++++|+|+|||||||||++|+|+++| +|+|.++|.++... ....+++.++|+||++.
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 477899999 99999999999999999999999999986 59999999987542 23345678999999864
Q ss_pred -----HHHHhcCCCC--cchHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~--~~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... ....+....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+++||| |+.|
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 174 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3333321111 11122334567788999887 567888888 999999999999999 99999999 5667
Q ss_pred CCCCc
Q 027509 205 DKIPR 209 (222)
Q Consensus 205 ~d~p~ 209 (222)
+|...
T Consensus 175 LD~~~ 179 (247)
T TIGR00972 175 LDPIA 179 (247)
T ss_pred CCHHH
Confidence 87543
No 124
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.95 E-value=9.9e-28 Score=202.83 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=108.6
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HHH
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~i 141 (222)
..+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.... ..++.++|+||++. +++
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~t~~en~ 91 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNI 91 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCccCCCCcHHHHH
Confidence 4578999 999999999999999999999999999998 99999999875432 34567999999864 344
Q ss_pred HhcCCCCcc-hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 142 ETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 142 ~~g~~~~~~-~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
.+....... ..+..+.+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~ 164 (213)
T TIGR01277 92 GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164 (213)
T ss_pred HhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 332211111 112334567789999998778898999 999999999999999 99999999 7788886543
No 125
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.9e-28 Score=212.14 Aligned_cols=141 Identities=14% Similarity=0.088 Sum_probs=108.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC-----CChHHHhhccEEecCchH----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-----KEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~-----~~~~e~~~~ig~v~Q~~~---- 138 (222)
+++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ....++++.++|+||++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 478899999 999999999999999999999999999998 999999988742 123445668999999862
Q ss_pred -----HHHHhcCCCC-cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 -----RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 -----~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+++.++.... ....+....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+||||| |+.|+|..
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 184 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 2233221110 11122234566788888884 567888888 999999999999999 99999999 77788765
Q ss_pred cc
Q 027509 209 RK 210 (222)
Q Consensus 209 ~K 210 (222)
.+
T Consensus 185 ~~ 186 (289)
T PRK13645 185 GE 186 (289)
T ss_pred HH
Confidence 43
No 126
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.95 E-value=8.9e-28 Score=221.03 Aligned_cols=140 Identities=19% Similarity=0.077 Sum_probs=111.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeec----cCCCCChHHH---h-hccEEecCchH-
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGEF---L-MRNGALPEERI- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~----di~~~~~~e~---~-~~ig~v~Q~~~- 138 (222)
.++++++|+ ++||+++|+|||||||||||++|+|+++|+ |+|.++|. ++...+..++ + ++++|+||++.
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 378899999 999999999999999999999999999998 99999985 4544433332 2 47999999875
Q ss_pred -------HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 -------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 -------~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+|+.++... .....+....+.++++.+++....++++.+ |||||||++|||||+ +|+|+||| |++++|.
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~ 197 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP 197 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 455443211 111223345678899999998889999999 999999999999999 99999999 6667775
Q ss_pred Cc
Q 027509 208 PR 209 (222)
Q Consensus 208 p~ 209 (222)
..
T Consensus 198 ~~ 199 (382)
T TIGR03415 198 LI 199 (382)
T ss_pred HH
Confidence 43
No 127
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7e-28 Score=206.62 Aligned_cols=141 Identities=19% Similarity=0.116 Sum_probs=106.8
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH-HhhccEEecCchH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e-~~~~ig~v~Q~~~------- 138 (222)
..++++++|+ .+||+++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ +++.++|+||++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV 97 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcH
Confidence 3578899999 999999999999999999999999999998 99999999886554433 4567999999864
Q ss_pred -HHHHhcCCCCcchHHHHHHHHHHHHhc-CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 -RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 -~~i~~g~~~~~~~~~~~~~~~~~L~~l-~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... ....+....+.++++.+ .+....+..+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 98 ~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~ 173 (237)
T PRK11614 98 EENLAMGGFF-AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173 (237)
T ss_pred HHHHHHhhhc-cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHH
Confidence 333332111 11111223344555655 355556677778 999999999999999 99999999 7778886543
No 128
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.95 E-value=1.7e-27 Score=208.08 Aligned_cols=139 Identities=19% Similarity=0.181 Sum_probs=108.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---HhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~~~~ig~v~Q~~~------ 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ +++.++|+||++.
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 104 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPR 104 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCC
Confidence 478899999 999999999999999999999999999998 99999999886543332 4567999999862
Q ss_pred ----HHHHhcCC--CCcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 ----RAVETGGC--PHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 ----~~i~~g~~--~~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+++.+... ......+....+.++++.+++. ...+..+.+ |+||+||++|||||+ +|+|+||| |+.++|..
T Consensus 105 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~ 184 (265)
T TIGR02769 105 MTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184 (265)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 12211100 0011112334567789999985 567888888 999999999999999 99999999 66777754
No 129
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=6.7e-28 Score=205.68 Aligned_cols=140 Identities=19% Similarity=0.094 Sum_probs=106.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH-HhhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e-~~~~ig~v~Q~~~-------- 138 (222)
+++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++......+ .++.++|+||++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 578899999 999999999999999999999999999998 99999998886544433 3467999999864
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcC-CcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~-l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
+++.++....... ......++++.++ +....++.+.+ |+||+||++|||||+ +|+|+||| |++|+|...+.
T Consensus 94 ~~l~~~~~~~~~~--~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~ 168 (230)
T TIGR03410 94 ENLLTGLAALPRR--SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168 (230)
T ss_pred HHHHHHHHhcCcc--hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 2332221111000 1122344555554 34556888888 999999999999999 99999999 77888865443
No 130
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.95 E-value=9.9e-28 Score=207.62 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=110.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC-------------hHHHhhccEEec
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------------DGEFLMRNGALP 134 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~-------------~~e~~~~ig~v~ 134 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+ ...+++.++|+|
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 478899999 999999999999999999999999999998 99999998875331 124466899999
Q ss_pred CchH--------HHHHhcCC--CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-c
Q 027509 135 EERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (222)
Q Consensus 135 Q~~~--------~~i~~g~~--~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~ 201 (222)
|++. +++.++.. ......+....+.++++.+++....++.+.+ |+||+||++|||||+ +|++|||| |
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9864 33333211 0011112234567788999988778888888 999999999999999 99999999 6
Q ss_pred CCCCCCCcc
Q 027509 202 SGGDKIPRK 210 (222)
Q Consensus 202 t~G~d~p~K 210 (222)
+.|+|...+
T Consensus 174 ~~~LD~~~~ 182 (252)
T TIGR03005 174 TSALDPELV 182 (252)
T ss_pred cccCCHHHH
Confidence 678886543
No 131
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-27 Score=204.78 Aligned_cols=135 Identities=21% Similarity=0.149 Sum_probs=108.3
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HHHHh
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~i~~ 143 (222)
+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .++.++|+||++. +++.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEecccccccCCcHHHHHhc
Confidence 68999 999999999999999999999999999998 999999998754322 2457999999864 44433
Q ss_pred cCCCCcc-hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 144 GGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 144 g~~~~~~-~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+..+... .......+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 3211111 112335577889999998888999999 999999999999999 99999999 7788887643
No 132
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.6e-28 Score=204.37 Aligned_cols=140 Identities=21% Similarity=0.209 Sum_probs=102.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.++|+||++. +
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 95 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIME 95 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHH
Confidence 3478899999 999999999999999999999999999998 999999988765445556678999999865 2
Q ss_pred HHHhcCCCCcchHHHHHH------HHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 140 AVETGGCPHAAIREDISI------NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~------~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
++.+.... .. ...... ..+.++.+ ++....+..+.+ |+|||||++|||||+ +|+++||| |+.|+|..
T Consensus 96 ~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~ 173 (229)
T cd03254 96 NIRLGRPN-AT-DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173 (229)
T ss_pred HHhccCCC-CC-HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 22222111 11 111111 11223332 333344556677 999999999999999 99999999 66688855
Q ss_pred cc
Q 027509 209 RK 210 (222)
Q Consensus 209 ~K 210 (222)
.+
T Consensus 174 ~~ 175 (229)
T cd03254 174 TE 175 (229)
T ss_pred HH
Confidence 43
No 133
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=1.1e-27 Score=200.91 Aligned_cols=136 Identities=12% Similarity=-0.011 Sum_probs=108.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.. ....++++++|+||++. +
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~ 93 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSGINPYLTLRE 93 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccccCcCCCHHH
Confidence 478899999 999999999999999999999999999998 999999988753 33455678999998754 2
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++.... .....+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 94 ~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~ 163 (200)
T PRK13540 94 NCLYDIHFS----PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSL 163 (200)
T ss_pred HHHHHHhcC----cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 333221100 1123566788888887767888888 999999999999999 99999999 7778876543
No 134
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=2e-28 Score=192.24 Aligned_cols=126 Identities=23% Similarity=0.246 Sum_probs=101.4
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCc
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~ 149 (222)
+++++|+ .+|++++|+|+||||||||+++|+|+++|+ |.|.+++.++...+...+++.++|++|++.... ..
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~ 74 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP------GL 74 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT------TS
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccc------cc
Confidence 3567888 999999999999999999999999999998 999999999976555667789999999853221 11
Q ss_pred chHH--HHHHHHHHHHhcCCcccccCcC----CC-ChHHHHHHHHHHHHc-CCCeEEEecCC
Q 027509 150 AIRE--DISINLGPLEELSNLFKADLLL----CE-SGGDNLAANFSRELA-DYIIYIIDVSG 203 (222)
Q Consensus 150 ~~~~--~~~~~~~~L~~l~l~~~~d~~~----~e-SgGqkQrv~iArAL~-~p~IlILD~t~ 203 (222)
.+.+ ....+.++++.+++....+..+ .+ |+|||||++|||||+ +|++||||||+
T Consensus 75 tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 75 TVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp BHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 2222 2345666777777665555555 77 999999999999999 99999999986
No 135
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.6e-27 Score=201.42 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=105.8
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC----hHHHhhccEEecCchH--------H
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~----~~e~~~~ig~v~Q~~~--------~ 139 (222)
+++|+ ++ ++++|+||||||||||+++|+|+++|+ |+|.++|.++.... ....++.++|+||++. +
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 88999 88 999999999999999999999999998 99999998774211 2234568999999864 2
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+..... ........+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 95 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 167 (214)
T cd03297 95 NLAFGLKRK-RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALR 167 (214)
T ss_pred HHHHHHhhC-CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 332221111 1112334567789999988778888888 999999999999999 99999999 7788886543
No 136
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.95 E-value=7.7e-28 Score=219.06 Aligned_cols=136 Identities=21% Similarity=0.140 Sum_probs=109.1
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC----hHHHhhccEEecCchH--------H
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~----~~e~~~~ig~v~Q~~~--------~ 139 (222)
+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ....+++++|+||++. +
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 78999 999999999999999999999999999998 99999998875321 1234567999999864 4
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
|+.++... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 95 nl~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~ 167 (354)
T TIGR02142 95 NLRYGMKR-ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRK 167 (354)
T ss_pred HHHHHhhc-cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 44443211 11122234567889999998888999999 999999999999999 99999999 7788887654
No 137
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.9e-28 Score=209.23 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=107.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ...++|+||++. +
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEEeCCCccCCCCcHHH
Confidence 477899999 999999999999999999999999999998 9999999887432 235899999854 3
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++... .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~ 164 (255)
T PRK11248 90 NVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTR 164 (255)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 33322110 111122334677889999988777888888 999999999999999 99999999 7778886543
No 138
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.95 E-value=1.3e-27 Score=204.83 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=104.4
Q ss_pred ccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HHHH
Q 027509 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVE 142 (222)
Q Consensus 73 ~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~i~ 142 (222)
.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++..... ..+|+||++. +++.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHHH
Confidence 467899 999999999999999999999999999998 999999988754322 2489998764 3443
Q ss_pred hcCC---CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 143 TGGC---PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 143 ~g~~---~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.. ......+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 3211 1111122334567789999998778888989 999999999999999 99999999 6678886544
No 139
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.95 E-value=1.3e-27 Score=226.47 Aligned_cols=136 Identities=22% Similarity=0.282 Sum_probs=106.6
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|.++.+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++... ..+++++|+||||++.
T Consensus 344 Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~ 422 (529)
T TIGR02868 344 YPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDT 422 (529)
T ss_pred cCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccc
Confidence 44444688999999 999999999999999999999999999998 9999999999888 8888899999999987
Q ss_pred ---HHHHhcCCCCcchHHHHHHHHHHHHhcCC-------cccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecC
Q 027509 139 ---RAVETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVS 202 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~~~~L~~l~l-------~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t 202 (222)
+|+.++. +... .+ .+.++++..++ ...+|..+.+ |||||||++|||||+ +|+|+||||+
T Consensus 423 TI~eNI~~g~-~~~~-~e---~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~ 497 (529)
T TIGR02868 423 TVRDNLRLGR-PDAT-DE---ELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEP 497 (529)
T ss_pred cHHHHHhccC-CCCC-HH---HHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6777753 2222 11 22233333332 2334555443 999999999999999 9999999955
Q ss_pred -CCCC
Q 027509 203 -GGDK 206 (222)
Q Consensus 203 -~G~d 206 (222)
.++|
T Consensus 498 TSaLD 502 (529)
T TIGR02868 498 TEHLD 502 (529)
T ss_pred cccCC
Confidence 4555
No 140
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-27 Score=215.75 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=108.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC----C-CcEEEeeccCCCCChHHHh----hccEEecCchHH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEERIR 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p----~-G~I~i~g~di~~~~~~e~~----~~ig~v~Q~~~~ 139 (222)
.++++++|+ ++||+++|+|+||||||||+++|+|++++ + |+|.++|.++......+++ +.|+||||++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 478999999 99999999999999999999999999973 6 9999999998765554432 369999999741
Q ss_pred ----------HHHhcCCC--CcchHHHHHHHHHHHHhcCCcc---cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-c
Q 027509 140 ----------AVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (222)
Q Consensus 140 ----------~i~~g~~~--~~~~~~~~~~~~~~L~~l~l~~---~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~ 201 (222)
++...... .....+..+.+.++|+.+++.. .+++++.+ ||||+|||+|||||+ +|+|+|+| |
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP 180 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 11110000 1112234456788999999863 46888999 999999999999999 99999999 7
Q ss_pred CCCCCCC
Q 027509 202 SGGDKIP 208 (222)
Q Consensus 202 t~G~d~p 208 (222)
++++|..
T Consensus 181 ts~LD~~ 187 (326)
T PRK11022 181 TTALDVT 187 (326)
T ss_pred CCCCCHH
Confidence 7777754
No 141
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.95 E-value=1.7e-27 Score=206.34 Aligned_cols=140 Identities=13% Similarity=0.093 Sum_probs=110.9
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH--------HHH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~i 141 (222)
.+.+++|+ ++|++++|+||||||||||+++|+|+++++|+|.++|.++......++++.++|+||++. +++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 57789999 999999999999999999999999998656999999998865555566667999999853 344
Q ss_pred HhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc--------CCCeEEEe-cCCCCCCCcc
Q 027509 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA--------DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~--------~p~IlILD-~t~G~d~p~K 210 (222)
.+.........+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~ 169 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ 169 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence 443211111122345667889999988778888899 999999999999998 45999999 7778876543
No 142
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.6e-27 Score=203.60 Aligned_cols=139 Identities=19% Similarity=0.173 Sum_probs=105.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------HH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~ 140 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|+||++. ++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 478899999 999999999999999999999999999998 999999988755444556678999999864 44
Q ss_pred HHhcCCCCcchHHHH-----HHHHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 141 VETGGCPHAAIREDI-----SINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 141 i~~g~~~~~~~~~~~-----~~~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+.+.... ....+.. ..+.+.++.+ ++....+..+.+ |+||+||++|||||+ +|+++||| |++|+|...
T Consensus 96 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 96 IAYGRPG-ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred hhccCCC-CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 4433221 1111100 1123344544 445556777778 999999999999999 99999999 777887654
No 143
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=1.6e-27 Score=202.91 Aligned_cols=140 Identities=15% Similarity=0.164 Sum_probs=107.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------HH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~ 140 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.......+++.++|+||++. ++
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~n 107 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHH
Confidence 478899999 999999999999999999999999999998 999999988755444455678999999875 23
Q ss_pred HHhcCCCCcchHH-----HHHHHHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 141 VETGGCPHAAIRE-----DISINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 141 i~~g~~~~~~~~~-----~~~~~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+.++... ....+ ....+.+.++.+ ++....+..+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 108 l~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 108 IAYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred hccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 3322111 11111 111234567777 666667888888 999999999999999 99999999 6668875544
No 144
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.95 E-value=2.4e-27 Score=203.07 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=104.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.++|+||++. +
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD 94 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence 3578899999 999999999999999999999999999998 999999988755445556678999999864 3
Q ss_pred HHHhcCCCCcchHHHHH-----HHHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 140 AVETGGCPHAAIREDIS-----INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~-----~~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
++.+... .....+... ...+.++.+ ++....+..+.+ |+|||||++|||||+ +|+++||| |++|+|...
T Consensus 95 nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 95 NIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 3333211 111111000 112234444 334445667788 999999999999999 99999999 777887654
Q ss_pred c
Q 027509 210 K 210 (222)
Q Consensus 210 K 210 (222)
+
T Consensus 174 ~ 174 (237)
T cd03252 174 E 174 (237)
T ss_pred H
Confidence 3
No 145
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=206.35 Aligned_cols=142 Identities=16% Similarity=0.118 Sum_probs=107.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC------CCcEEEeeccCC--CCChHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIF--TKEDGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p------~G~I~i~g~di~--~~~~~e~~~~ig~v~Q~~~- 138 (222)
..++.+++|+ .+|++++|+||||||||||+++|+|+++| +|+|.++|.++. ..+...++++++|+||++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 3478899999 99999999999999999999999999986 499999999875 2233455678999999864
Q ss_pred -------HHHHhcCCCC-c--chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-c
Q 027509 139 -------RAVETGGCPH-A--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (222)
Q Consensus 139 -------~~i~~g~~~~-~--~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~ 201 (222)
+++.++.... . ...+....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+|+||| |
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3333321110 0 1112223456677777763 346777888 999999999999999 99999999 7
Q ss_pred CCCCCCCcc
Q 027509 202 SGGDKIPRK 210 (222)
Q Consensus 202 t~G~d~p~K 210 (222)
+.|+|...+
T Consensus 177 ~~~LD~~~~ 185 (253)
T PRK14267 177 TANIDPVGT 185 (253)
T ss_pred CccCCHHHH
Confidence 778876544
No 146
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=206.00 Aligned_cols=143 Identities=16% Similarity=0.137 Sum_probs=108.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCC--ChHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++| + |+|.++|.++... ....+++.++|+||++.
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 3478899999 99999999999999999999999999986 4 9999999887432 22345678999999864
Q ss_pred ------HHHHhcCCCCc--chHHHHHHHHHHHHhcCC----cccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ------RAVETGGCPHA--AIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ------~~i~~g~~~~~--~~~~~~~~~~~~L~~l~l----~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.++..... ...+....+.++++.+++ ....++.+.+ |+|||||++|||||+ +|+|+||| |+.
T Consensus 100 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~ 179 (254)
T PRK14273 100 FLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS 179 (254)
T ss_pred ccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 34443321110 111223455667777765 3456778888 999999999999999 99999999 777
Q ss_pred CCCCCccC
Q 027509 204 GDKIPRKG 211 (222)
Q Consensus 204 G~d~p~K~ 211 (222)
|+|...+.
T Consensus 180 ~LD~~~~~ 187 (254)
T PRK14273 180 ALDPISTG 187 (254)
T ss_pred ccCHHHHH
Confidence 88865543
No 147
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=225.03 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=112.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH-HhhccEEecCchH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e-~~~~ig~v~Q~~~------- 138 (222)
..++++++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+... .++.++|+||++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTI 96 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcH
Confidence 3478899999 999999999999999999999999999998 99999999875443333 2457999999853
Q ss_pred -HHHHhcCCCC-----cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 -RAVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 -~~i~~g~~~~-----~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+||||| |++++|...
T Consensus 97 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 176 (501)
T PRK10762 97 AENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTE 176 (501)
T ss_pred HHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHH
Confidence 4444432111 11222335577889999998888898999 999999999999999 99999999 777888654
Q ss_pred c
Q 027509 210 K 210 (222)
Q Consensus 210 K 210 (222)
+
T Consensus 177 ~ 177 (501)
T PRK10762 177 T 177 (501)
T ss_pred H
Confidence 4
No 148
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-27 Score=208.43 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=107.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.+++.++. .+++.++|+||++.
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEEEecCccCCCCCcHH
Confidence 3478899999 999999999999999999999999999998 99999886552 34567999999864
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... .....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.|+|...+
T Consensus 100 enl~~~~~~-----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~ 169 (257)
T PRK11247 100 DNVGLGLKG-----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTR 169 (257)
T ss_pred HHHHhcccc-----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 233322110 1123566788999988878888888 999999999999999 99999999 7778886544
No 149
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.95 E-value=6.4e-28 Score=199.45 Aligned_cols=116 Identities=26% Similarity=0.329 Sum_probs=99.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|+||
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q------------ 80 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ------------ 80 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH------------
Confidence 478899999 999999999999999999999999999998 999999998866555556667888877
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 81 -------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 81 -------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred -------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 55666666666677778 999999999999999 99999999 6668886544
No 150
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=217.28 Aligned_cols=133 Identities=20% Similarity=0.152 Sum_probs=107.2
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC----hHHHhhccEEecCchH--------H
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~----~~e~~~~ig~v~Q~~~--------~ 139 (222)
+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ....+++++|+||++. +
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 68999 999999999999999999999999999998 99999998875321 1234568999999864 3
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
|+.++.. ......+.++++.+++....++.+.+ |||||||++|||||+ +|+++||| |++++|...|.
T Consensus 96 nl~~~~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~ 165 (352)
T PRK11144 96 NLRYGMA-----KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred HHHhhhh-----hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 3332211 11234567789999998888999999 999999999999999 99999999 66788866543
No 151
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.95 E-value=1.7e-27 Score=203.81 Aligned_cols=137 Identities=13% Similarity=0.050 Sum_probs=104.5
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC----C-CcEEEeeccCCCCChHHHhhccEEecCchHH------
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------ 139 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p----~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~------ 139 (222)
+++++|+ ++|++++|+||||||||||+++|+|+++| + |+|.++|.++... ...++.++|+||++..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCccc
Confidence 5678999 99999999999999999999999999998 6 9999999887432 2223579999999731
Q ss_pred ----HHHhcCC-CCcchHHHHHHHHHHHHhcCCc---ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 140 ----AVETGGC-PHAAIREDISINLGPLEELSNL---FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 140 ----~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~---~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
++.+... ......+....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|..
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 1111100 0011122234567789999887 456788888 999999999999999 99999999 66688865
Q ss_pred cc
Q 027509 209 RK 210 (222)
Q Consensus 209 ~K 210 (222)
.+
T Consensus 160 ~~ 161 (230)
T TIGR02770 160 NQ 161 (230)
T ss_pred HH
Confidence 43
No 152
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=209.50 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=107.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------- 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~------- 139 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ...++.++|+||++..
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEEeccccccccCCCcc
Confidence 3478899999 999999999999999999999999999998 999999988731 1122469999998531
Q ss_pred ---HHHhcCCCCc-----chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 140 ---AVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 140 ---~i~~g~~~~~-----~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
++.++..... ........+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|..
T Consensus 97 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~ 176 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVK 176 (272)
T ss_pred hhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 1111111100 0112234566788999988778899999 999999999999999 99999999 77788765
Q ss_pred cc
Q 027509 209 RK 210 (222)
Q Consensus 209 ~K 210 (222)
.+
T Consensus 177 ~~ 178 (272)
T PRK15056 177 TE 178 (272)
T ss_pred HH
Confidence 44
No 153
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.3e-27 Score=205.26 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=106.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCC--CChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~-- 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|++. |+ |+|.++|.++.. .+...+++.++|+||++.
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 478899999 9999999999999999999999999864 46 999999988753 223345678999999863
Q ss_pred -----HHHHhcCCCC-c-chHHHHHHHHHHHHhcCCcc----cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH-A-AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~-~-~~~~~~~~~~~~L~~l~l~~----~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... . ...+....+.++++.+++.. ..++.+.+ |+|||||++|||||+ +|+|+||| |+.|
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~ 179 (253)
T PRK14242 100 PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179 (253)
T ss_pred cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3443321111 1 11122345666788877642 35777888 999999999999999 99999999 7778
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 180 LD~~~~ 185 (253)
T PRK14242 180 LDPIAT 185 (253)
T ss_pred CCHHHH
Confidence 876543
No 154
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.94 E-value=3.9e-27 Score=204.76 Aligned_cols=141 Identities=19% Similarity=0.164 Sum_probs=108.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc-----CCCCChHHH----hhccEEecCchH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF----LMRNGALPEERI 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d-----i~~~~~~e~----~~~ig~v~Q~~~ 138 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.+ +......++ ++.++|+||++.
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence 477899999 999999999999999999999999999998 999999987 654443332 346999999873
Q ss_pred H----------HHHhcC--CCCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cC
Q 027509 139 R----------AVETGG--CPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 139 ~----------~i~~g~--~~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t 202 (222)
. ++.... .......+....+.++++.+++.. ..++.+.+ |+||+||++|||||+ +|+|+||| |+
T Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt 179 (258)
T PRK11701 100 DGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT 179 (258)
T ss_pred cccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1 221110 000011122345677888998863 67888888 999999999999999 99999999 77
Q ss_pred CCCCCCcc
Q 027509 203 GGDKIPRK 210 (222)
Q Consensus 203 ~G~d~p~K 210 (222)
.|+|...+
T Consensus 180 ~~LD~~~~ 187 (258)
T PRK11701 180 GGLDVSVQ 187 (258)
T ss_pred ccCCHHHH
Confidence 78886544
No 155
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.8e-27 Score=199.11 Aligned_cols=133 Identities=18% Similarity=0.149 Sum_probs=111.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
.+++.++|++ .+|++++++||+||||||||++++|+..|+ |+|.+++..|+... ..-|.|||+..
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----ccceeEeccCccchhhHHH
Confidence 4578899999 999999999999999999999999999998 99999999986532 23489999875
Q ss_pred HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCC
Q 027509 139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDK 206 (222)
Q Consensus 139 ~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d 206 (222)
+|+.+|... .....+....+.+.+..++++...++++.+ |||||||+.|||||+ +|++++||||.|--
T Consensus 93 dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl 163 (259)
T COG4525 93 DNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL 163 (259)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhH
Confidence 677776432 122234456778889999999888999999 999999999999999 99999999888743
No 156
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.94 E-value=3.5e-27 Score=202.36 Aligned_cols=141 Identities=14% Similarity=0.067 Sum_probs=105.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc--CCC-CcEEEeeccCCCCChHHH-hhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll--~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~------ 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|++ +|+ |+|.++|.++...+.... +..++|+||++.
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS 93 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence 467899999 999999999999999999999999995 677 999999998765444333 345899999864
Q ss_pred --HHHHhcCCCC--------cchHHHHHHHHHHHHhcCCc-ccccCcCC-C-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 --RAVETGGCPH--------AAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 --~~i~~g~~~~--------~~~~~~~~~~~~~L~~l~l~-~~~d~~~~-e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.+..... ....+....+.++++.+++. ...++.+. + |+|||||++|||||+ +|+++||| |+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 173 (243)
T TIGR01978 94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173 (243)
T ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 2222211000 01112234567788888886 35677775 5 999999999999999 99999999 677
Q ss_pred CCCCCcc
Q 027509 204 GDKIPRK 210 (222)
Q Consensus 204 G~d~p~K 210 (222)
++|...+
T Consensus 174 ~LD~~~~ 180 (243)
T TIGR01978 174 GLDIDAL 180 (243)
T ss_pred cCCHHHH
Confidence 7775543
No 157
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.3e-27 Score=203.14 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=108.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC---CC-CcEEEeeccCCCCChHHHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~---p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------ 138 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++ |+ |+|.++|.++...+...+++.++|+||++.
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv 95 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSI 95 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccH
Confidence 478899999 9999999999999999999999999984 56 999999998865555556778999999864
Q ss_pred -HHHHhcCCCCc---chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 -RAVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 -~~i~~g~~~~~---~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+++.++...+. ........+.++++.+++. ...+..+.+ |+||+||++|||||+ +|+|+||| |+.|+|.
T Consensus 96 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~ 175 (246)
T PRK14269 96 YENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP 175 (246)
T ss_pred HHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 33333211000 0122334566788888874 345677778 999999999999999 99999999 7777775
Q ss_pred Cc
Q 027509 208 PR 209 (222)
Q Consensus 208 p~ 209 (222)
..
T Consensus 176 ~~ 177 (246)
T PRK14269 176 IS 177 (246)
T ss_pred HH
Confidence 44
No 158
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.9e-27 Score=223.71 Aligned_cols=142 Identities=11% Similarity=0.055 Sum_probs=113.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC--C-CcEEEeeccCCCCChHH-HhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p--~-G~I~i~g~di~~~~~~e-~~~~ig~v~Q~~~----- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++| + |+|.++|.++...+..+ .++.++||||++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKEL 97 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCC
Confidence 3578999999 99999999999999999999999999996 6 99999999886544433 3467999999864
Q ss_pred ---HHHHhcCCCC----cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 ---RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 ---~~i~~g~~~~----~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+||||| |++++|..
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~ 177 (506)
T PRK13549 98 SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTES 177 (506)
T ss_pred cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 4444432211 11122335677889999998778899999 999999999999999 99999999 66688865
Q ss_pred cc
Q 027509 209 RK 210 (222)
Q Consensus 209 ~K 210 (222)
.+
T Consensus 178 ~~ 179 (506)
T PRK13549 178 ET 179 (506)
T ss_pred HH
Confidence 44
No 159
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=3.4e-27 Score=195.13 Aligned_cols=138 Identities=16% Similarity=0.143 Sum_probs=112.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---H-hhccEEecCchH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI---- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~-~~~ig~v~Q~~~---- 138 (222)
..++..+++. ++||.++|+||+||||||||-+++|+.+|+ |+|.+.|.++...+... + .+++|||||.+.
T Consensus 23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN 102 (228)
T ss_pred eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc
Confidence 3478899999 999999999999999999999999999998 99999999998766532 2 357999999875
Q ss_pred ----HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCC
Q 027509 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDK 206 (222)
Q Consensus 139 ----~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d 206 (222)
+|+.+.... ....++..+.+.+.|+.+++...+.-++.+ ||||||||+|||||+ .|+|+|.|||+|--
T Consensus 103 ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNL 177 (228)
T COG4181 103 LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNL 177 (228)
T ss_pred chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCc
Confidence 343332111 111233445678899999999999999999 999999999999999 99999999777643
No 160
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.94 E-value=3.2e-27 Score=205.19 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=109.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCC-------------ChHHHhhccEEec
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-------------EDGEFLMRNGALP 134 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~-------------~~~e~~~~ig~v~ 134 (222)
.++.+++|+ ++|++++|+|+|||||||||++|+|+++|+ |+|.++|.++... +...+++.++|+|
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 98 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence 477899999 999999999999999999999999999998 9999999877421 1234567899999
Q ss_pred CchH--------HHHHhcCC--CCcchHHHHHHHHHHHHhcCCcccc-cCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-
Q 027509 135 EERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (222)
Q Consensus 135 Q~~~--------~~i~~g~~--~~~~~~~~~~~~~~~L~~l~l~~~~-d~~~~e-SgGqkQrv~iArAL~-~p~IlILD- 200 (222)
|++. +++.++.. ......+....+.++++.+++.... ++.+.+ |+|||||++|||||+ +|+|+|||
T Consensus 99 q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 178 (257)
T PRK10619 99 QHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDE 178 (257)
T ss_pred cCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9864 33332211 0111122335667789999987653 778888 999999999999999 99999999
Q ss_pred cCCCCCCCcc
Q 027509 201 VSGGDKIPRK 210 (222)
Q Consensus 201 ~t~G~d~p~K 210 (222)
|+.|+|...+
T Consensus 179 Pt~~LD~~~~ 188 (257)
T PRK10619 179 PTSALDPELV 188 (257)
T ss_pred CcccCCHHHH
Confidence 7778886543
No 161
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.2e-27 Score=223.46 Aligned_cols=141 Identities=15% Similarity=0.057 Sum_probs=113.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~-------- 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+. ++.++|+||++.
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVL 98 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHH
Confidence 478899999 999999999999999999999999999998 999999998865444333 356999999864
Q ss_pred HHHHhcCCCC---cc-----hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 RAVETGGCPH---AA-----IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 ~~i~~g~~~~---~~-----~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+++.++.... .. ..+...++.++++.+++....++.+.+ ||||||||+|||||+ +|+||||| |++|+|.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~ 178 (510)
T PRK09700 99 ENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178 (510)
T ss_pred HHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 4444332111 01 122345677889999998888999999 999999999999999 99999999 7778886
Q ss_pred Ccc
Q 027509 208 PRK 210 (222)
Q Consensus 208 p~K 210 (222)
..+
T Consensus 179 ~~~ 181 (510)
T PRK09700 179 KEV 181 (510)
T ss_pred HHH
Confidence 544
No 162
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.94 E-value=6.2e-27 Score=200.66 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=101.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------HH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~ 140 (222)
+++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.++|+||++. ++
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHH
Confidence 478899999 999999999999999999999999999998 999999988755445555667999999865 23
Q ss_pred HHhcCCCCcchHHHHH-----HHHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 141 VETGGCPHAAIREDIS-----INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~-----~~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+.++.... ...+... ...+.++.+ ++....+..+.+ |+||+||++|||||+ +|+++||| |+.|+|..
T Consensus 97 l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~ 173 (238)
T cd03249 97 IRYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173 (238)
T ss_pred hhccCCCC-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 33321111 1111100 112222333 333445667778 999999999999999 99999999 77788844
No 163
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=4.1e-27 Score=212.74 Aligned_cols=141 Identities=17% Similarity=0.153 Sum_probs=109.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC----CCcEEEeeccCCCCChHHHh----hccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFL----MRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p----~G~I~i~g~di~~~~~~e~~----~~ig~v~Q~~~-- 138 (222)
.++++++|+ .+||+++|+|+||||||||+++|+|+++| +|+|.++|.++...+..+++ +.|+||||++.
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 109 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS 109 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence 478899999 99999999999999999999999999988 49999999998766554432 37999999974
Q ss_pred --------HHHHhcC--CCCcchHHHHHHHHHHHHhcCCcc---cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cC
Q 027509 139 --------RAVETGG--CPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 139 --------~~i~~g~--~~~~~~~~~~~~~~~~L~~l~l~~---~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t 202 (222)
+++.... .......+...++.++|+.+++.. ..++++.+ ||||+||++|||||+ +|+|||+| |+
T Consensus 110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPt 189 (330)
T PRK09473 110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189 (330)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1121110 001122333456777889888864 34678888 999999999999999 99999999 77
Q ss_pred CCCCCCcc
Q 027509 203 GGDKIPRK 210 (222)
Q Consensus 203 ~G~d~p~K 210 (222)
+++|.-.+
T Consensus 190 s~LD~~~~ 197 (330)
T PRK09473 190 TALDVTVQ 197 (330)
T ss_pred ccCCHHHH
Confidence 77775443
No 164
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.94 E-value=2.7e-27 Score=203.56 Aligned_cols=139 Identities=19% Similarity=0.121 Sum_probs=106.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEec-CchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP-EERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~-Q~~~-------- 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.+++.++.. ....+++.++|+| |.+.
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcCCccccCCCCcHH
Confidence 478899999 999999999999999999999999999998 999999987643 2234566899998 4322
Q ss_pred HHHHhcCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ~~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.+... ......+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 188 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 23322111 0111122234556788888888777888888 999999999999999 99999999 777887553
No 165
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.94 E-value=4.9e-27 Score=199.61 Aligned_cols=141 Identities=18% Similarity=0.184 Sum_probs=105.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEee--c--cCCCCChHH---H-hhccEEecCchH-
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT--N--DIFTKEDGE---F-LMRNGALPEERI- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g--~--di~~~~~~e---~-~~~ig~v~Q~~~- 138 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.+++ . ++...+... + +++++|+||++.
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 478899999 999999999999999999999999999998 9999984 2 443333322 2 346999999864
Q ss_pred -------HHHHhcCC-CCcchHHHHHHHHHHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 -------RAVETGGC-PHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 -------~~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++.+... ......+..+.+.++++.+++... .++.+.+ |+||+||++|||||+ +|+++||| |+.|+|
T Consensus 102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 181 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181 (224)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 23322111 011111223456778899988653 4777888 999999999999999 99999999 777887
Q ss_pred CCcc
Q 027509 207 IPRK 210 (222)
Q Consensus 207 ~p~K 210 (222)
...+
T Consensus 182 ~~~~ 185 (224)
T TIGR02324 182 AANR 185 (224)
T ss_pred HHHH
Confidence 6543
No 166
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.6e-27 Score=201.00 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=102.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.++|+||++. +
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 93 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGY 93 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHH
Confidence 3477899999 999999999999999999999999999998 999999988865555556678999999875 3
Q ss_pred HHHhcCCCCcchHHHHH-----HHHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 140 AVETGGCPHAAIREDIS-----INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~-----~~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
++.++... ....+... ...+.++.+ ++....+..+.. |+|||||++|||||+ +|+++||| |+.|+|...
T Consensus 94 nl~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 94 NIRYGRPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHhhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 33332211 11111000 111222333 233334555667 999999999999999 99999999 667888654
No 167
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.1e-27 Score=204.95 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=107.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCC--CChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++ |+ |+|.++|.++.. .+...++++++|+||++.
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 478899999 9999999999999999999999999986 45 999999988743 223455678999999864
Q ss_pred -----HHHHhcCCC--CcchHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCP--HAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~--~~~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++... .....+...++.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|
T Consensus 107 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 186 (260)
T PRK10744 107 PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSA 186 (260)
T ss_pred cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcc
Confidence 333332110 111122234566788888763 346777888 999999999999999 99999999 7778
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 187 LD~~~~ 192 (260)
T PRK10744 187 LDPIST 192 (260)
T ss_pred CCHHHH
Confidence 876543
No 168
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.3e-27 Score=204.79 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=104.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCC--CChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++ |+ |+|.++|.++.. .+..++++.++|+||++.
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 106 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF 106 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence 477899999 9999999999999999999999999987 56 999999988742 234456678999999864
Q ss_pred -----HHHHhcCCCCcchHHHHHHHHHHHHhcCC----cccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 -----RAVETGGCPHAAIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 -----~~i~~g~~~~~~~~~~~~~~~~~L~~l~l----~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++.++........+....+.++++.+++ ....+..+.+ |+|||||++|||||+ +|+||||| |+.|+|
T Consensus 107 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD 186 (269)
T PRK14259 107 PKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186 (269)
T ss_pred hhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 33433221110011122344556676654 2346777888 999999999999999 99999999 667777
Q ss_pred CCc
Q 027509 207 IPR 209 (222)
Q Consensus 207 ~p~ 209 (222)
...
T Consensus 187 ~~~ 189 (269)
T PRK14259 187 PIS 189 (269)
T ss_pred HHH
Confidence 543
No 169
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.9e-27 Score=206.15 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=107.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCC--ChHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++| + |+|.++|.++... +...+++.++|+||++.
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 3478899999 99999999999999999999999999874 6 9999999887532 23455678999999864
Q ss_pred ------HHHHhcCCCC-c--chHHHHHHHHHHHHhcCCcc----cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cC
Q 027509 139 ------RAVETGGCPH-A--AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 139 ------~~i~~g~~~~-~--~~~~~~~~~~~~L~~l~l~~----~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t 202 (222)
+++.++.... . ...+....+.++++.+++.. ..++.+.+ |+|||||++|||||+ +|+||||| |+
T Consensus 112 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 191 (267)
T PRK14235 112 FPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPC 191 (267)
T ss_pred CCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3443321111 0 11122345667888888743 45677888 999999999999999 99999999 77
Q ss_pred CCCCCCc
Q 027509 203 GGDKIPR 209 (222)
Q Consensus 203 ~G~d~p~ 209 (222)
.|+|...
T Consensus 192 ~~LD~~~ 198 (267)
T PRK14235 192 SALDPIA 198 (267)
T ss_pred cCCCHHH
Confidence 7887554
No 170
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=4.7e-27 Score=225.32 Aligned_cols=135 Identities=20% Similarity=0.158 Sum_probs=104.8
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
..+++++++|+ ++|++++|+||||||||||+++|+|++ |+ |+|.++|.++...+..+++++|+||||++.
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 35678999999 999999999999999999999999999 77 999999999988888889999999999986
Q ss_pred HHHHhcCCCCcchHHHHHH-----HHHHHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEec-CCCCC
Q 027509 139 RAVETGGCPHAAIREDISI-----NLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDV-SGGDK 206 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~-----~~~~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~-t~G~d 206 (222)
+|+.++. +.....+..+. ..+.++.+ ....+..+.+ |||||||++|||||+ +|+|+|||| |+.+|
T Consensus 441 eNI~~g~-~~~~~eei~~al~~a~l~~~i~~l--p~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD 517 (588)
T PRK11174 441 DNVLLGN-PDASDEQLQQALENAWVSEFLPLL--PQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517 (588)
T ss_pred HHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhc--ccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 7777763 32222111111 11223332 2234554433 999999999999999 999999995 45555
No 171
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.6e-27 Score=202.50 Aligned_cols=138 Identities=19% Similarity=0.169 Sum_probs=110.1
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~ 140 (222)
++++++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++..... .++.++|+||++. ++
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEEeecCccCCCccHHHH
Confidence 58899999 999999999999999999999999999998 999999998865333 2568999999864 23
Q ss_pred HHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 141 i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+.+..... ....+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |++|+|...+
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~ 165 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK 165 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHH
Confidence 33221111 11122334567788999988878888989 999999999999999 99999999 7788886544
No 172
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.8e-27 Score=211.49 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=108.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC----CC-CcEEEeeccCCCCChHHH----hhccEEecCchHH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR----DK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERIR 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~----p~-G~I~i~g~di~~~~~~e~----~~~ig~v~Q~~~~ 139 (222)
.++++++|+ .+||+++|+|+||||||||+++|+|+++ ++ |+|.++|.++......++ ++.|+||||++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~ 100 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence 478899999 9999999999999999999999999996 46 999999999876554433 2469999998741
Q ss_pred ----------HHHhc--CC-CC----cchHHHHHHHHHHHHhcCCcc---cccCcCCC-ChHHHHHHHHHHHHc-CCCeE
Q 027509 140 ----------AVETG--GC-PH----AAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (222)
Q Consensus 140 ----------~i~~g--~~-~~----~~~~~~~~~~~~~L~~l~l~~---~~d~~~~e-SgGqkQrv~iArAL~-~p~Il 197 (222)
++... .. .. ....+....+.++|+.+++.. .+++++.+ ||||+|||+|||||+ +|+||
T Consensus 101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ll 180 (330)
T PRK15093 101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEE
Confidence 12111 00 00 001122356778999999864 35788889 999999999999999 99999
Q ss_pred EEe-cCCCCCCCcc
Q 027509 198 IID-VSGGDKIPRK 210 (222)
Q Consensus 198 ILD-~t~G~d~p~K 210 (222)
|+| |++++|...+
T Consensus 181 ilDEPts~LD~~~~ 194 (330)
T PRK15093 181 IADEPTNAMEPTTQ 194 (330)
T ss_pred EEeCCCCcCCHHHH
Confidence 999 7778875443
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.1e-27 Score=201.07 Aligned_cols=140 Identities=15% Similarity=0.102 Sum_probs=110.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++..... .++.++|+||++. +
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccccCCCCcHHH
Confidence 478899999 999999999999999999999999999998 999999998864332 2467999999865 2
Q ss_pred HHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 140 ~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
++.+..... .......+.+..+++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+.
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~ 167 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 222211100 11112234556788889988888888888 999999999999999 99999999 78888865543
No 174
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.3e-27 Score=209.96 Aligned_cols=139 Identities=19% Similarity=0.125 Sum_probs=112.5
Q ss_pred ccCCCCCCC-cEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh----HHHhhccEEecCchHH-------
Q 027509 73 LSRNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIR------- 139 (222)
Q Consensus 73 ~~~~~~~~G-eivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~----~e~~~~ig~v~Q~~~~------- 139 (222)
...+|..+| .+++|.|++|||||||+|+|+|+++|+ |.|.++|.-+...+. ..-+++||||||+...
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 467888555 999999999999999999999999999 999999986644322 1125789999999762
Q ss_pred -HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccCCCce
Q 027509 140 -AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGPGI 215 (222)
Q Consensus 140 -~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~~~~~ 215 (222)
|+.+|... ........+...|++...+++++.+ ||||||||+|+|||+ .|++++|| |-..+|.|||.++|=
T Consensus 95 gNL~YG~~~-----~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilp 169 (352)
T COG4148 95 GNLRYGMWK-----SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP 169 (352)
T ss_pred cchhhhhcc-----cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHH
Confidence 23333221 1234556688999999999999999 999999999999999 99999999 668999999998774
Q ss_pred e
Q 027509 216 T 216 (222)
Q Consensus 216 ~ 216 (222)
-
T Consensus 170 y 170 (352)
T COG4148 170 Y 170 (352)
T ss_pred H
Confidence 3
No 175
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=8.8e-27 Score=202.92 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=110.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC----CcEEEeeccCCCC-----ChHHHhhccEEecCchH
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTK-----EDGEFLMRNGALPEERI 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~----G~I~i~g~di~~~-----~~~e~~~~ig~v~Q~~~ 138 (222)
..++++++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++... .....+++++|+||++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 3478899999 999999999999999999999999999863 8999999887432 12344567999999864
Q ss_pred --------HHHHhcCCCCc-------c--hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEE
Q 027509 139 --------RAVETGGCPHA-------A--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (222)
Q Consensus 139 --------~~i~~g~~~~~-------~--~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlIL 199 (222)
+++.++..... . ..+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+||||
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILA 176 (262)
T ss_pred cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEe
Confidence 34433311000 0 112335677889999988778888999 999999999999999 9999999
Q ss_pred e-cCCCCCCCc
Q 027509 200 D-VSGGDKIPR 209 (222)
Q Consensus 200 D-~t~G~d~p~ 209 (222)
| |++|+|...
T Consensus 177 DEPt~~LD~~~ 187 (262)
T PRK09984 177 DEPIASLDPES 187 (262)
T ss_pred cCccccCCHHH
Confidence 9 777787653
No 176
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.8e-27 Score=204.32 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=106.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCCC--hHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~~--~~e~~~~ig~v~Q~~~-- 138 (222)
.++++++|+ .+|++++|+|+|||||||||++|+|+++| + |+|.++|.++.... ...+++.++|+||++.
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 478899999 99999999999999999999999999874 5 99999998875321 2345667999999864
Q ss_pred -----HHHHhcCCCC-cchHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 139 -----RAVETGGCPH-AAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 139 -----~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
+++.+..... ....+....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|+
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~L 185 (258)
T PRK14268 106 PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185 (258)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 3333321100 11112223456678887763 346777888 999999999999999 99999999 77788
Q ss_pred CCCcc
Q 027509 206 KIPRK 210 (222)
Q Consensus 206 d~p~K 210 (222)
|...+
T Consensus 186 D~~~~ 190 (258)
T PRK14268 186 DPIST 190 (258)
T ss_pred CHHHH
Confidence 86544
No 177
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=6e-27 Score=221.99 Aligned_cols=139 Identities=16% Similarity=0.104 Sum_probs=112.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHh-hccEEecCchH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~-~~ig~v~Q~~~------- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+.+ +.++|+||++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 103 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV 103 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence 3478899999 999999999999999999999999999998 9999999888654444433 46999999864
Q ss_pred -HHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 -~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++... ..+...++.++++.+++....++.+.+ |+||||||+|||||+ +|+||||| |++|+|...+
T Consensus 104 ~e~l~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~ 176 (510)
T PRK15439 104 KENILFGLPK---RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAET 176 (510)
T ss_pred HHHhhccccc---chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence 333332211 122335667789999998888899999 999999999999999 99999999 7777876543
No 178
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=5e-27 Score=198.96 Aligned_cols=134 Identities=20% Similarity=0.199 Sum_probs=102.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------HH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~ 140 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++. ++
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 97 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN 97 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHH
Confidence 578899999 999999999999999999999999999998 999999998765555566778999999875 22
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCcc-----------cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-----------~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+.+.. ... ...+.++++.+++.. ..+..+.. |+||+||++|||||+ +|+++||| |+.|+|
T Consensus 98 l~~~~--~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD 171 (221)
T cd03244 98 LDPFG--EYS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVD 171 (221)
T ss_pred hCcCC--CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 21110 011 112333344444332 23456677 999999999999999 99999999 777777
Q ss_pred CCc
Q 027509 207 IPR 209 (222)
Q Consensus 207 ~p~ 209 (222)
...
T Consensus 172 ~~~ 174 (221)
T cd03244 172 PET 174 (221)
T ss_pred HHH
Confidence 553
No 179
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.94 E-value=5.7e-27 Score=199.83 Aligned_cols=138 Identities=17% Similarity=0.121 Sum_probs=106.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC---CC-CcEEEeeccCCCCChHHHhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~---p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~----- 138 (222)
..++++++|+ ++|++++|+||||||||||+++|+|+++ |+ |+|.++|.++. ...+++.++|+||++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhcccEEEeCCCCccCcCC
Confidence 4578899999 9999999999999999999999999998 87 99999998774 2355678999999864
Q ss_pred ---HHHHhcCCCC--cc-hHH-HHHHHHH-HHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 ---RAVETGGCPH--AA-IRE-DISINLG-PLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 ---~~i~~g~~~~--~~-~~~-~~~~~~~-~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+++.+..... .. ..+ ....+.+ .++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|.
T Consensus 97 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~ 176 (226)
T cd03234 97 TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176 (226)
T ss_pred cHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCH
Confidence 3443321100 00 111 1123334 78888887777888888 999999999999999 99999999 6678886
Q ss_pred Cc
Q 027509 208 PR 209 (222)
Q Consensus 208 p~ 209 (222)
..
T Consensus 177 ~~ 178 (226)
T cd03234 177 FT 178 (226)
T ss_pred HH
Confidence 53
No 180
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.94 E-value=5.9e-27 Score=202.68 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=106.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc-----CCCCChHHH----hhccEEecCchH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF----LMRNGALPEERI 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d-----i~~~~~~e~----~~~ig~v~Q~~~ 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.+ +......++ ++.++|+||++.
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR 96 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcc
Confidence 467899999 999999999999999999999999999998 999999876 544333322 346999999863
Q ss_pred H----------HHHhcC--CCCcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cC
Q 027509 139 R----------AVETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 139 ~----------~i~~g~--~~~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t 202 (222)
. ++.... .......+....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+|+||| |+
T Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~ 176 (253)
T TIGR02323 97 DGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPT 176 (253)
T ss_pred cccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1 221100 00000112234567788999986 467888888 999999999999999 99999999 66
Q ss_pred CCCCCCcc
Q 027509 203 GGDKIPRK 210 (222)
Q Consensus 203 ~G~d~p~K 210 (222)
.|+|...+
T Consensus 177 ~~LD~~~~ 184 (253)
T TIGR02323 177 GGLDVSVQ 184 (253)
T ss_pred ccCCHHHH
Confidence 68886544
No 181
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=4.4e-27 Score=199.38 Aligned_cols=136 Identities=14% Similarity=0.064 Sum_probs=106.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++... +.++.++|++|++. +
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~~~q~~~~~~~~t~~e 101 (214)
T PRK13543 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAYLGHLPGLKADLSTLE 101 (214)
T ss_pred eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEEeecCcccccCCcHHH
Confidence 478899999 999999999999999999999999999998 9999999887532 33457999998753 2
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+..... .. .....+.++++.+++....+..+.+ |+|||||++|||||+ +|+|+||| |+.++|...+
T Consensus 102 ~l~~~~~~~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (214)
T PRK13543 102 NLHFLCGLH-GR-RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGI 173 (214)
T ss_pred HHHHHHHhc-CC-cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 222211000 00 1123456678888888778888888 999999999999999 99999999 6777775544
No 182
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.2e-27 Score=203.46 Aligned_cols=141 Identities=15% Similarity=0.097 Sum_probs=106.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCC--CChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~-- 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++| + |+|.++|.++.. .....+++.++|+||++.
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 478899999 99999999999999999999999999873 5 999999988742 223455678999999754
Q ss_pred ------HHHHhcCCCC-c-chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ------RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ------~~i~~g~~~~-~-~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.++.... . ...+..+.+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 177 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCS 177 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 3333221100 0 1112224556678888763 356777888 999999999999999 99999999 666
Q ss_pred CCCCCcc
Q 027509 204 GDKIPRK 210 (222)
Q Consensus 204 G~d~p~K 210 (222)
|+|...+
T Consensus 178 ~LD~~~~ 184 (258)
T PRK14241 178 ALDPIST 184 (258)
T ss_pred cCCHHHH
Confidence 8886544
No 183
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=4.2e-27 Score=198.55 Aligned_cols=136 Identities=18% Similarity=0.120 Sum_probs=106.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.. . .+++.++|++|... +
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEEecCCCcCCCCCcHHH
Confidence 467899999 999999999999999999999999999998 999999987632 2 25678999987643 2
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
++.+..... .. ..+.+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+.
T Consensus 93 ~l~~~~~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 164 (207)
T PRK13539 93 NLEFWAAFL-GG--EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA 164 (207)
T ss_pred HHHHHHHhc-CC--cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 332211000 00 113467788999987777888888 999999999999999 99999999 66788765443
No 184
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=219.94 Aligned_cols=140 Identities=19% Similarity=0.176 Sum_probs=110.0
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh-HHHhhccEEecCch---H------
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEER---I------ 138 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~-~e~~~~ig~v~Q~~---~------ 138 (222)
++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+. ..++++++|+||++ .
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 357 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS 357 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence 68899999 999999999999999999999999999998 999999988754333 23456799999973 1
Q ss_pred --HHHHhcCCCC----------cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cC
Q 027509 139 --RAVETGGCPH----------AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 139 --~~i~~g~~~~----------~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t 202 (222)
+++.++.... ....+....+.++++.+++. ...++.+.+ ||||||||+|||||+ +|+||||| |+
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 3333321100 01112234567889999986 678899999 999999999999999 99999999 77
Q ss_pred CCCCCCcc
Q 027509 203 GGDKIPRK 210 (222)
Q Consensus 203 ~G~d~p~K 210 (222)
.|+|...+
T Consensus 438 ~~LD~~~~ 445 (510)
T PRK09700 438 RGIDVGAK 445 (510)
T ss_pred CCcCHHHH
Confidence 78886654
No 185
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.94 E-value=6.3e-27 Score=229.21 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=108.9
Q ss_pred CCCC-CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---
Q 027509 65 FSRR-APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--- 138 (222)
Q Consensus 65 ~~~~-~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--- 138 (222)
|..+ .+.+++++++ ++||.++|+|+||||||||+|+|+|+++|+ |+|.++|.|+...+...+|++||||+|++.
T Consensus 481 y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~ 560 (709)
T COG2274 481 YGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS 560 (709)
T ss_pred eCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhc
Confidence 4444 3578999999 999999999999999999999999999998 999999999998888999999999999986
Q ss_pred ----HHHHhcCCCCcchHHHHHH-----HHHHHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecCC
Q 027509 139 ----RAVETGGCPHAAIREDISI-----NLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVSG 203 (222)
Q Consensus 139 ----~~i~~g~~~~~~~~~~~~~-----~~~~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t~ 203 (222)
+|+.++. |.....+..+. +.+.+..+ ....+..+.| |||||||++|||||+ +|+|+||||++
T Consensus 561 gSI~eNi~l~~-p~~~~e~i~~A~~~ag~~~fI~~l--P~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT 637 (709)
T COG2274 561 GSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENL--PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637 (709)
T ss_pred CcHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhc--ccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence 6666653 33332222111 22233332 3345566655 999999999999999 99999999655
Q ss_pred -CCC
Q 027509 204 -GDK 206 (222)
Q Consensus 204 -G~d 206 (222)
.+|
T Consensus 638 SaLD 641 (709)
T COG2274 638 SALD 641 (709)
T ss_pred cccC
Confidence 444
No 186
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.9e-27 Score=219.87 Aligned_cols=141 Identities=14% Similarity=0.087 Sum_probs=111.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH-HhhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e-~~~~ig~v~Q~~~-------- 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ +++.++|+||++.
T Consensus 12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (491)
T PRK10982 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM 91 (491)
T ss_pred EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence 478899999 999999999999999999999999999998 99999999886544333 3567999999864
Q ss_pred HHHHhcCCCCc----chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPHA----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~~----~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++..... ...+..+.+.++++.+++....++.+.+ ||||||||+|||||+ +|+|+||| |++|+|...+
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~ 170 (491)
T PRK10982 92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170 (491)
T ss_pred HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 34443322111 1122235677789999988778888888 999999999999999 99999999 6668886543
No 187
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=204.63 Aligned_cols=141 Identities=19% Similarity=0.203 Sum_probs=112.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC---------CCcEEEeeccCCCCChHHHhhccEEecCchH-
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD---------KYSLAAVTNDIFTKEDGEFLMRNGALPEERI- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p---------~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~- 138 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|+++| +|+|.++|.++......++++.++|+||++.
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 478899999 99999999999999999999999999987 5999999998865555556667899999753
Q ss_pred -------HHHHhcCCCCc---c--hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc----------CCC
Q 027509 139 -------RAVETGGCPHA---A--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA----------DYI 195 (222)
Q Consensus 139 -------~~i~~g~~~~~---~--~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~----------~p~ 195 (222)
+++.++..+.. . ..+....+.++++.+++....++.+.+ |+||+||++|||||+ +|+
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~ 174 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174 (272)
T ss_pred CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCC
Confidence 44444322211 0 122334567789999988778888888 999999999999999 799
Q ss_pred eEEEe-cCCCCCCCcc
Q 027509 196 IYIID-VSGGDKIPRK 210 (222)
Q Consensus 196 IlILD-~t~G~d~p~K 210 (222)
|+||| |+.|+|...+
T Consensus 175 lllLDEPt~~LD~~~~ 190 (272)
T PRK13547 175 YLLLDEPTAALDLAHQ 190 (272)
T ss_pred EEEEcCccccCCHHHH
Confidence 99999 7778886544
No 188
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.94 E-value=8.2e-27 Score=200.56 Aligned_cols=139 Identities=16% Similarity=0.101 Sum_probs=110.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++.... ..++.++|+||++. +
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEEEecChhhccCCcHHH
Confidence 478899999 999999999999999999999999999998 99999998875432 23567999999865 2
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+.... ..........+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 166 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVR 166 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 33222110 011122234567788999888778888888 999999999999999 99999999 7888886544
No 189
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=9.7e-27 Score=219.07 Aligned_cols=140 Identities=14% Similarity=0.012 Sum_probs=109.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE----- 142 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~----- 142 (222)
.++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.+++.++...+..++++.++|+||++...+.
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 96 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED 96 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence 378899999 999999999999999999999999999998 9999988877544445556679999998642110
Q ss_pred -hc--CCCCcch-HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 143 -TG--GCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 143 -~g--~~~~~~~-~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
++ ....... .+...++.++++.+++....++.+.+ |||||||++|||||+ +|++|||| |++|+|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 170 (490)
T PRK10938 97 DTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVAS 170 (490)
T ss_pred hccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 00 0000000 12234567889999998888999999 999999999999999 99999999 667777543
No 190
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.2e-27 Score=203.59 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=107.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCCCC--hHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~~~--~~e~~~~ig~v~Q~~~- 138 (222)
..++++++|+ .+|++++|+||||||||||+++|+|+++ |+ |+|.++|.++.... ...+++.++|+||++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 3578899999 9999999999999999999999999986 35 99999998774322 1245678999999864
Q ss_pred ------HHHHhcCCC-Cc--chHHHHHHHHHHHHhcCCcc----cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cC
Q 027509 139 ------RAVETGGCP-HA--AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 139 ------~~i~~g~~~-~~--~~~~~~~~~~~~L~~l~l~~----~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t 202 (222)
+++.++... .. ...+....+.++++.+++.. ..++.+.+ |+|||||++|||||+ +|+|+||| |+
T Consensus 98 ~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 177 (251)
T PRK14244 98 FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPC 177 (251)
T ss_pred ccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 333332100 00 11122345567788888753 35667777 999999999999999 99999999 77
Q ss_pred CCCCCCccC
Q 027509 203 GGDKIPRKG 211 (222)
Q Consensus 203 ~G~d~p~K~ 211 (222)
.|+|...+.
T Consensus 178 ~~LD~~~~~ 186 (251)
T PRK14244 178 SALDPVATN 186 (251)
T ss_pred ccCCHHHHH
Confidence 888876543
No 191
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1e-26 Score=203.22 Aligned_cols=142 Identities=14% Similarity=0.073 Sum_probs=107.0
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCC--ChHHHhhccEEecCchH
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~ 138 (222)
+..++++++|+ ++|++++|+|+||||||||+++|+|+++| + |+|.++|.++... ....+++.++|+||++.
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 34578899999 99999999999999999999999999986 5 9999999987532 22345667999999864
Q ss_pred -------HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc----cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -------RAVETGGCPHAAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -------~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~----~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++........+....+.++++.+++.. ..+..+.+ |+||+||++|||||+ +|+||||| |++|
T Consensus 100 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsg 179 (261)
T PRK14263 100 PFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSA 179 (261)
T ss_pred cccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3333331111101122245666788877643 33556677 999999999999999 99999999 7788
Q ss_pred CCCCc
Q 027509 205 DKIPR 209 (222)
Q Consensus 205 ~d~p~ 209 (222)
+|...
T Consensus 180 LD~~~ 184 (261)
T PRK14263 180 LDPIA 184 (261)
T ss_pred CCHHH
Confidence 88654
No 192
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.94 E-value=2.1e-26 Score=201.84 Aligned_cols=141 Identities=15% Similarity=0.075 Sum_probs=108.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh---HHHhhccEEecCchHH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERIR---- 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~---~e~~~~ig~v~Q~~~~---- 139 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+. ..+++.++|+||++..
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 3578899999 999999999999999999999999999998 999999988765433 2346689999998631
Q ss_pred ------HHHhcCC--CCcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 140 ------AVETGGC--PHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 140 ------~i~~g~~--~~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
++.+... ......+....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+||||| |+.|+|.
T Consensus 105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~ 184 (268)
T PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184 (268)
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 1111100 0011112234567788888886 467888888 999999999999999 99999999 6668886
Q ss_pred Cc
Q 027509 208 PR 209 (222)
Q Consensus 208 p~ 209 (222)
..
T Consensus 185 ~~ 186 (268)
T PRK10419 185 VL 186 (268)
T ss_pred HH
Confidence 43
No 193
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-26 Score=222.92 Aligned_cols=138 Identities=18% Similarity=0.214 Sum_probs=112.5
Q ss_pred CCCC--CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--
Q 027509 65 FSRR--APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 65 ~~~~--~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-- 138 (222)
|..| .+++++++|+ ++||+++|+||||+||||++++|..++.|+ |+|.++|.||.+.+...++++||+|.|||.
T Consensus 475 YP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF 554 (716)
T KOG0058|consen 475 YPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLF 554 (716)
T ss_pred cCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceee
Confidence 4444 4678999999 999999999999999999999999999998 999999999999999999999999999997
Q ss_pred -----HHHHhcCCCCcchHHHHH-----HHHHHHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecC
Q 027509 139 -----RAVETGGCPHAAIREDIS-----INLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVS 202 (222)
Q Consensus 139 -----~~i~~g~~~~~~~~~~~~-----~~~~~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t 202 (222)
+||.+|.. .....+..+ .+.+.+..| ....+..+.| |||||||++|||||+ +|.|+||||.
T Consensus 555 s~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~--p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEA 631 (716)
T KOG0058|consen 555 SGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNF--PDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEA 631 (716)
T ss_pred cccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhC--ccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEech
Confidence 78887754 333222211 122334443 4556777766 999999999999999 9999999977
Q ss_pred CCC
Q 027509 203 GGD 205 (222)
Q Consensus 203 ~G~ 205 (222)
++-
T Consensus 632 TSA 634 (716)
T KOG0058|consen 632 TSA 634 (716)
T ss_pred hhh
Confidence 653
No 194
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=1.4e-26 Score=196.29 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=98.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh----HHHhhccEEecCchH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERI---- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~----~e~~~~ig~v~Q~~~---- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.+++.++..... ..+++.++|+||++.
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA 93 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccc
Confidence 4578899999 999999999999999999999999999998 999999987643221 223467999999875
Q ss_pred ---HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc-----------cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-c
Q 027509 139 ---RAVETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-----------~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~ 201 (222)
+++.+.. . .. .+ ...++++.+++.. ..+..+.+ |+||+||++|||||+ +|+|+||| |
T Consensus 94 t~~~nl~~~~-~-~~-~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 167 (218)
T cd03290 94 TVEENITFGS-P-FN-KQ---RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDP 167 (218)
T ss_pred cHHHHHhhcC-c-CC-HH---HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 3333321 1 11 11 1122333333221 23456677 999999999999999 99999999 7
Q ss_pred CCCCCCCcc
Q 027509 202 SGGDKIPRK 210 (222)
Q Consensus 202 t~G~d~p~K 210 (222)
+.|+|...+
T Consensus 168 t~~LD~~~~ 176 (218)
T cd03290 168 FSALDIHLS 176 (218)
T ss_pred ccccCHHHH
Confidence 778886543
No 195
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-26 Score=199.70 Aligned_cols=141 Identities=17% Similarity=0.160 Sum_probs=105.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCC--CChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~-- 138 (222)
.++++++|+ ++||+++|+|||||||||||++|+|++++ + |+|.++|.++.. .+...+++.++|+||++.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 478899999 99999999999999999999999998762 5 999999998753 123345678999999864
Q ss_pred -----HHHHhcCCCC-c-chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~-~-~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... . ...+..+.+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|
T Consensus 97 ~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 176 (250)
T PRK14240 97 PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176 (250)
T ss_pred cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 3333321111 0 1112234556667777653 345777888 999999999999999 99999999 7778
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 177 LD~~~~ 182 (250)
T PRK14240 177 LDPIST 182 (250)
T ss_pred CCHHHH
Confidence 876543
No 196
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=201.57 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=106.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCC--CChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++| + |+|.++|.++.. .+...+++.++|+||++.
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 478899999 99999999999999999999999999873 4 999999998753 223455678999999864
Q ss_pred -----HHHHhcCCCCc--chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~~--~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++..... ...+....+.++++.+++. ..++..+.+ |+||+||++|||||+ +|+|+||| |+.|
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~ 185 (259)
T PRK14274 106 PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSA 185 (259)
T ss_pred ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 33333211110 1112223455677777764 245777888 999999999999999 99999999 7778
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 186 LD~~~~ 191 (259)
T PRK14274 186 LDPVST 191 (259)
T ss_pred CCHHHH
Confidence 886544
No 197
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.4e-26 Score=217.26 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=112.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh-HHHhhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~-~e~~~~ig~v~Q~~~-------- 138 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+. ..+++.++|+||++.
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVA 97 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHH
Confidence 478899999 999999999999999999999999999998 999999998754333 234567999999864
Q ss_pred HHHHhcCCCC----cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~----~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ....+....+.++++.+++....++.+.+ |||||||++|||||+ +|+|+||| |++|+|...+
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (501)
T PRK11288 98 ENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176 (501)
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHH
Confidence 4444432111 11122335677889999988777888888 999999999999999 99999999 6777776543
No 198
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.9e-26 Score=199.57 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=106.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC--C---C-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~--p---~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ ++|++++|+|+||||||||+++|+|+++ | + |+|.++|.++... ....+++.++|+||++.
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 478899999 9999999999999999999999999986 3 5 9999999987532 22345678999999864
Q ss_pred ------HHHHhcCCCC--cchHHHHHHHHHHHHhcCCcc----cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ------RAVETGGCPH--AAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ------~~i~~g~~~~--~~~~~~~~~~~~~L~~l~l~~----~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.++.... ....+....+.++++.+++.. ..+..+.+ |+||+||++|||||+ +|+|+||| |+.
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 177 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPAS 177 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 3343321111 111122345667788887643 45667788 999999999999999 99999999 777
Q ss_pred CCCCCcc
Q 027509 204 GDKIPRK 210 (222)
Q Consensus 204 G~d~p~K 210 (222)
|+|...+
T Consensus 178 gLD~~~~ 184 (252)
T PRK14256 178 ALDPIST 184 (252)
T ss_pred cCCHHHH
Confidence 8886544
No 199
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.94 E-value=1.6e-26 Score=225.65 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=106.3
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
..+++++++|+ ++|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||||++.
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 544 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIF 544 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHH
Confidence 35688999999 999999999999999999999999999998 999999999988888899999999999986
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+|+.++. + ... + .+.++++..++. ...|..+.+ |||||||++|||||+ +|+|+||| +|++
T Consensus 545 eNi~~~~-~-~~~-e---~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~ 618 (686)
T TIGR03797 545 ENIAGGA-P-LTL-D---EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSA 618 (686)
T ss_pred HHHhcCC-C-CCH-H---HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 6776653 2 221 1 223333333332 233444433 999999999999999 99999999 5555
Q ss_pred CCC
Q 027509 205 DKI 207 (222)
Q Consensus 205 ~d~ 207 (222)
+|.
T Consensus 619 LD~ 621 (686)
T TIGR03797 619 LDN 621 (686)
T ss_pred CCH
Confidence 653
No 200
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.2e-26 Score=195.50 Aligned_cols=139 Identities=22% Similarity=0.204 Sum_probs=117.8
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ .+||+++|+||||||||||||.|||-+.|+ |++.++|.++..+...++.+..+.+||+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~ 93 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ 93 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHH
Confidence 4477899999 999999999999999999999999999998 999999999999999998888899999765
Q ss_pred HHHHhcCCCCcc---hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc---CC----CeEEEecC-CCCC
Q 027509 139 RAVETGGCPHAA---IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA---DY----IIYIIDVS-GGDK 206 (222)
Q Consensus 139 ~~i~~g~~~~~~---~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~---~p----~IlILD~t-~G~d 206 (222)
+.+.+|..|+.. ..++.+.+..+|...++.....+...+ ||||||||.+||+|+ .| ++++|||| +.+|
T Consensus 94 eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLD 173 (259)
T COG4559 94 EVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173 (259)
T ss_pred HHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccc
Confidence 677888888743 235566678889988888888888888 999999999999997 33 38899955 4455
Q ss_pred C
Q 027509 207 I 207 (222)
Q Consensus 207 ~ 207 (222)
+
T Consensus 174 i 174 (259)
T COG4559 174 I 174 (259)
T ss_pred h
Confidence 4
No 201
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.94 E-value=2.6e-26 Score=219.84 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=105.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+...+++.++||||++. +
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 435 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIAN 435 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHH
Confidence 4678999999 999999999999999999999999999998 999999999988777888899999999976 6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcC-------CcccccCcC----CC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELS-------NLFKADLLL----CE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~-------l~~~~d~~~----~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++..+... .+ .+.++++.++ +...+|..+ .+ |||||||++|||||+ +|+|+||| ||+++
T Consensus 436 Ni~~~~~~~~~-~~---~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaL 511 (582)
T PRK11176 436 NIAYARTEQYS-RE---QIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511 (582)
T ss_pred HHhcCCCCCCC-HH---HHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccC
Confidence 77766422111 11 1222222222 122344444 33 999999999999999 99999999 55666
Q ss_pred CCC
Q 027509 206 KIP 208 (222)
Q Consensus 206 d~p 208 (222)
|..
T Consensus 512 D~~ 514 (582)
T PRK11176 512 DTE 514 (582)
T ss_pred CHH
Confidence 643
No 202
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.94 E-value=3e-26 Score=195.52 Aligned_cols=128 Identities=22% Similarity=0.268 Sum_probs=100.6
Q ss_pred CC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----------HHHHhc
Q 027509 77 FN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----------RAVETG 144 (222)
Q Consensus 77 ~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~----------~~i~~g 144 (222)
|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++. +.++.++|+||++. +++.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 34 689999999999999999999999999998 99999998762 23567999999753 233332
Q ss_pred CCCC-----cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 145 GCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 145 ~~~~-----~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
.... ....+....+.++++.+++....+..+.+ |+|||||++|||||+ +|+++||| |+.|+|...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 1110 01112334567789999988778888888 999999999999999 99999999 777888654
No 203
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=223.84 Aligned_cols=141 Identities=17% Similarity=0.094 Sum_probs=110.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH---HHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~---e~~~~ig~v~Q~~~------ 138 (222)
.++++++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+.. .++++|+||||++.
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 467899999 999999999999999999999999999998 9999999988654332 23567999999863
Q ss_pred ----HHHHhcCCC-Cc-chHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 ----~~i~~g~~~-~~-~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+++.+.... .. ...+....+.++|+.+++. ...++++.+ ||||||||+|||||+ +|+||||| |++++|..
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~ 497 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 222221100 00 1122335677889999985 567899999 999999999999999 99999999 67777755
Q ss_pred cc
Q 027509 209 RK 210 (222)
Q Consensus 209 ~K 210 (222)
.+
T Consensus 498 ~~ 499 (623)
T PRK10261 498 IR 499 (623)
T ss_pred HH
Confidence 43
No 204
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.9e-26 Score=201.61 Aligned_cols=142 Identities=12% Similarity=0.075 Sum_probs=105.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCCC--ChHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~- 138 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++ |+ |+|.++|.++... ....+++.++|+||++.
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 4578899999 9999999999999999999999999864 56 9999999987532 22345668999999864
Q ss_pred ------HHHHhcCCCCcc-h-HHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ------RAVETGGCPHAA-I-REDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ------~~i~~g~~~~~~-~-~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.++...... . ......+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.
T Consensus 114 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 193 (268)
T PRK14248 114 FPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPAS 193 (268)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCc
Confidence 333332110100 0 11123455567777663 345777888 999999999999999 99999999 777
Q ss_pred CCCCCcc
Q 027509 204 GDKIPRK 210 (222)
Q Consensus 204 G~d~p~K 210 (222)
|+|...+
T Consensus 194 ~LD~~~~ 200 (268)
T PRK14248 194 ALDPISN 200 (268)
T ss_pred ccCHHHH
Confidence 8886544
No 205
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=204.93 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=107.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCCC--ChHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~- 138 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++ |+ |+|.++|.++... +...+++.++|+||++.
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 3578899999 9999999999999999999999999987 56 9999999887432 23445678999999863
Q ss_pred ------HHHHhcCCCCcchHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 139 ------RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 139 ------~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
+++.+.........+....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+||||| |+.|+
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~L 211 (285)
T PRK14254 132 FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211 (285)
T ss_pred CcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 333322110000012234566778888764 346777888 999999999999999 99999999 77788
Q ss_pred CCCcc
Q 027509 206 KIPRK 210 (222)
Q Consensus 206 d~p~K 210 (222)
|...+
T Consensus 212 D~~~~ 216 (285)
T PRK14254 212 DPVAT 216 (285)
T ss_pred CHHHH
Confidence 86543
No 206
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=8.3e-27 Score=198.28 Aligned_cols=134 Identities=16% Similarity=0.101 Sum_probs=105.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.+++.++... . .+.++|+||++. +
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEEEcCCCCccccCCHHH
Confidence 467899999 999999999999999999999999999998 9999999876421 1 247999999764 2
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.+..... .. ....+.++++.+++....++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 90 ~~~~~~~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~ 160 (223)
T TIGR03740 90 NLKVHTTLL-GL--PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGI 160 (223)
T ss_pred HHHHHHHHc-CC--CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHH
Confidence 222211000 00 123456788889988778888888 999999999999999 99999999 7788886643
No 207
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.94 E-value=1.8e-26 Score=225.94 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=107.8
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|..+.+++++++|+ ++|+.++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++|+||||++.
T Consensus 483 y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g 562 (708)
T TIGR01193 483 YGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG 562 (708)
T ss_pred cCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH
Confidence 33345678999999 999999999999999999999999999998 999999999988888889999999999986
Q ss_pred ---HHHHhcCCCCcchHHHHHHHHHHHHhcCC-------cccccCcCC----C-ChHHHHHHHHHHHHc-CCCeEEEe-c
Q 027509 139 ---RAVETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLC----E-SGGDNLAANFSRELA-DYIIYIID-V 201 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~~~~L~~l~l-------~~~~d~~~~----e-SgGqkQrv~iArAL~-~p~IlILD-~ 201 (222)
+|+.++..+.... +. +.++++..++ ...++..+. . |||||||++|||||+ +|+|+||| +
T Consensus 563 TI~eNi~l~~~~~~~~-~~---i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~ 638 (708)
T TIGR01193 563 SILENLLLGAKENVSQ-DE---IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDES 638 (708)
T ss_pred HHHHHHhccCCCCCCH-HH---HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCc
Confidence 6777763333321 11 1222222221 123344443 2 999999999999999 99999999 5
Q ss_pred CCCCCCC
Q 027509 202 SGGDKIP 208 (222)
Q Consensus 202 t~G~d~p 208 (222)
|+++|..
T Consensus 639 Ts~LD~~ 645 (708)
T TIGR01193 639 TSNLDTI 645 (708)
T ss_pred cccCCHH
Confidence 5666643
No 208
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.94 E-value=1.6e-26 Score=200.61 Aligned_cols=139 Identities=14% Similarity=0.038 Sum_probs=105.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC----C-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p----~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
..++.+++|+ .+|++++|+||||||||||+++|+|+++| + |+|.++|.++.. ....++.++|+||++.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~--~~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP--CALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc--cccccceEEEEecCCccccC
Confidence 3578899999 99999999999999999999999999998 7 999999998742 1122357999999863
Q ss_pred ------HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc---cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 ------RAVETGGCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 ------~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~---~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++..... ..........+.++++.+++.. ..++.+.+ |+||+||++|||||+ +|+|+||| |+.|+|
T Consensus 94 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 172 (254)
T PRK10418 94 PLHTMHTHARETCL-ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172 (254)
T ss_pred ccccHHHHHHHHHH-HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 11111000 0001112245677888888865 45788888 999999999999999 99999999 666888
Q ss_pred CCcc
Q 027509 207 IPRK 210 (222)
Q Consensus 207 ~p~K 210 (222)
...+
T Consensus 173 ~~~~ 176 (254)
T PRK10418 173 VVAQ 176 (254)
T ss_pred HHHH
Confidence 6543
No 209
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.9e-26 Score=200.41 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=103.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCC--CChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|++. |+ |+|.++|.++.. ....+++++++|+||++.
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 103 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF 103 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence 578899999 9999999999999999999999999976 35 999999988742 223455678999999854
Q ss_pred -----HHHHhcCCCCcchHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 -----RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 -----~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++.++........+....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+||||| |+.|+|
T Consensus 104 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 183 (264)
T PRK14243 104 PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183 (264)
T ss_pred cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 333332111100011123344456665552 245677788 999999999999999 99999999 777777
Q ss_pred CCcc
Q 027509 207 IPRK 210 (222)
Q Consensus 207 ~p~K 210 (222)
...+
T Consensus 184 ~~~~ 187 (264)
T PRK14243 184 PIST 187 (264)
T ss_pred HHHH
Confidence 6543
No 210
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=206.20 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=112.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-C----C-CcEEEeeccCCCCChHHH----hhccEEecCchH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-D----K-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-p----~-G~I~i~g~di~~~~~~e~----~~~ig~v~Q~~~ 138 (222)
.+++++||+ ++||++||+|++|||||||.++|+|+++ + . |+|.++|.++...+..+. .+.|+||||++.
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 478999999 9999999999999999999999999997 3 3 899999999988777643 247999999987
Q ss_pred HHH----------HhcCCCCc---chHHHHHHHHHHHHhcCCcc---cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe
Q 027509 139 RAV----------ETGGCPHA---AIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (222)
Q Consensus 139 ~~i----------~~g~~~~~---~~~~~~~~~~~~L~~l~l~~---~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD 200 (222)
..+ .-....+. ...+..+++.++|+.+++.. .++.++.+ ||||+|||+||.||+ +|+|+|.|
T Consensus 99 ~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIAD 178 (316)
T COG0444 99 TSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178 (316)
T ss_pred hhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeC
Confidence 221 11111111 22344567888999999875 57999999 999999999999999 99999999
Q ss_pred -cCCCCCCC
Q 027509 201 -VSGGDKIP 208 (222)
Q Consensus 201 -~t~G~d~p 208 (222)
||+++|+.
T Consensus 179 EPTTALDvt 187 (316)
T COG0444 179 EPTTALDVT 187 (316)
T ss_pred CCcchhhHH
Confidence 77788753
No 211
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-26 Score=198.41 Aligned_cols=140 Identities=17% Similarity=0.119 Sum_probs=106.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ .+|++++|+|+|||||||||++|+|+++| + |+|.++|.++... +...+++.++|+||++.
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 477899999 99999999999999999999999999874 5 9999999988532 22345678999999864
Q ss_pred -----HHHHhcCCCC-c-chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~-~-~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... . ...+....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+||||| |+.|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 177 (251)
T PRK14270 98 PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177 (251)
T ss_pred CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3443321111 1 1112224456677887763 345777888 999999999999999 99999999 7777
Q ss_pred CCCCc
Q 027509 205 DKIPR 209 (222)
Q Consensus 205 ~d~p~ 209 (222)
+|...
T Consensus 178 LD~~~ 182 (251)
T PRK14270 178 LDPIS 182 (251)
T ss_pred CCHHH
Confidence 77653
No 212
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.4e-26 Score=216.38 Aligned_cols=143 Identities=19% Similarity=0.240 Sum_probs=110.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-CC-CcEEEeeccCCCCCh-HHHhhccEEecCchH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI------ 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-p~-G~I~i~g~di~~~~~-~e~~~~ig~v~Q~~~------ 138 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++ |+ |+|.++|.++..... ...+++++|+||++.
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 3578889999 9999999999999999999999999998 46 999999988754333 234567999999851
Q ss_pred -----HHHHhcCCC-C-----cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 -----RAVETGGCP-H-----AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 -----~~i~~g~~~-~-----~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.++... . ....+....+.++++.+++. ...++.+.+ ||||||||+|||||+ +|+||||| |+.
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~ 434 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTR 434 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 333332110 0 01122335677889999986 467888999 999999999999999 99999999 777
Q ss_pred CCCCCccC
Q 027509 204 GDKIPRKG 211 (222)
Q Consensus 204 G~d~p~K~ 211 (222)
|+|...+.
T Consensus 435 ~LD~~~~~ 442 (506)
T PRK13549 435 GIDVGAKY 442 (506)
T ss_pred CcCHhHHH
Confidence 88876543
No 213
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=4.1e-26 Score=215.27 Aligned_cols=140 Identities=15% Similarity=0.077 Sum_probs=109.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC--C-CcEEEeeccCCCCChHH-HhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p--~-G~I~i~g~di~~~~~~e-~~~~ig~v~Q~~~------ 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++| + |+|.++|.++...+..+ .++.++||||++.
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELS 94 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCc
Confidence 478899999 99999999999999999999999999986 5 99999999886544333 3457999999864
Q ss_pred --HHHHhcCCCC-----cchHHHHHHHHHHHHhcCCcccc-cCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 --RAVETGGCPH-----AAIREDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 --~~i~~g~~~~-----~~~~~~~~~~~~~L~~l~l~~~~-d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+++.++.... ....+...++.++++.+++.... ++.+.+ ||||||||+|||||+ +|+||||| |++|+|.
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~ 174 (500)
T TIGR02633 95 VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTE 174 (500)
T ss_pred HHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 3444432111 11122335677889999987543 566888 999999999999999 99999999 7777775
Q ss_pred Cc
Q 027509 208 PR 209 (222)
Q Consensus 208 p~ 209 (222)
..
T Consensus 175 ~~ 176 (500)
T TIGR02633 175 KE 176 (500)
T ss_pred HH
Confidence 53
No 214
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=3.5e-26 Score=219.60 Aligned_cols=133 Identities=15% Similarity=0.094 Sum_probs=105.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+...++++|+||||++. +
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~ 433 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLA 433 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHH
Confidence 4578999999 999999999999999999999999999998 999999999988888889999999999986 6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcC----CC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLL----CE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~----~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++. + .. . +.+.++++.+++. ..+|..+ .. |||||||++|||||+ +|+|+||| ||+++
T Consensus 434 NI~~~~-~-~~-d---~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~L 507 (592)
T PRK10790 434 NVTLGR-D-IS-E---EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507 (592)
T ss_pred HHHhCC-C-CC-H---HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 777664 2 21 1 1233344444332 2234333 23 999999999999999 99999999 55555
Q ss_pred CC
Q 027509 206 KI 207 (222)
Q Consensus 206 d~ 207 (222)
|.
T Consensus 508 D~ 509 (592)
T PRK10790 508 DS 509 (592)
T ss_pred CH
Confidence 53
No 215
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.1e-27 Score=196.80 Aligned_cols=141 Identities=21% Similarity=0.211 Sum_probs=124.8
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
...++.++++. ++|.+++|+|||||||||||.+++++++.+ |+|+++|.++..++.+++.++++.+-|+..
T Consensus 13 ~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV 92 (252)
T COG4604 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTV 92 (252)
T ss_pred CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEH
Confidence 35677899999 999999999999999999999999999998 999999999999999999999998888764
Q ss_pred -HHHHhcCCCCcch---HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecC-CCCCCC
Q 027509 139 -RAVETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVS-GGDKIP 208 (222)
Q Consensus 139 -~~i~~g~~~~~~~---~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t-~G~d~p 208 (222)
+.+.||++|+..- .++...+.++++.|.++...++++.+ |||||||+.||+.|+ +.+.++|||| ..+|+.
T Consensus 93 ~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmk 169 (252)
T COG4604 93 RDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169 (252)
T ss_pred HHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchH
Confidence 4567888887542 56778889999999999999999999 999999999999999 9999999954 556643
No 216
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.93 E-value=4e-26 Score=218.39 Aligned_cols=139 Identities=22% Similarity=0.247 Sum_probs=109.7
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|.+..+.+++++|+ ++||.+||+||+|||||||+++|+++++|+ |+|.++|.++...+...++++|+||||++.
T Consensus 338 y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~ 417 (567)
T COG1132 338 YPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417 (567)
T ss_pred cCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecc
Confidence 33356788999999 999999999999999999999999999997 999999999999888999999999999986
Q ss_pred ---HHHHhcCCCCcchHHHHHH-----HHHHHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 139 ---RAVETGGCPHAAIREDISI-----NLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~-----~~~~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
+|+.+|.. .+...+..+. +.+.++.+ ...+|..+.+ |||||||++|||||+ +|+|+||||++.
T Consensus 418 TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 418 TIRENIALGRP-DATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred cHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhC--cccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 77777643 2322221111 12233333 2345666653 999999999999999 999999995554
Q ss_pred -CC
Q 027509 205 -DK 206 (222)
Q Consensus 205 -~d 206 (222)
+|
T Consensus 495 alD 497 (567)
T COG1132 495 ALD 497 (567)
T ss_pred ccC
Confidence 44
No 217
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.8e-26 Score=197.32 Aligned_cols=141 Identities=17% Similarity=0.158 Sum_probs=105.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
+++++++|+ ++|++++|+|||||||||||++|+|+++| + |+|.++|.++... +...+++.++|+||++.
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 478899999 99999999999999999999999999873 6 9999999887532 12345668999999864
Q ss_pred -----HHHHhcCCCC-cch-HHHHHHHHHHHHhcCCcc----cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH-AAI-REDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~-~~~-~~~~~~~~~~L~~l~l~~----~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... ... ......+.++++.+++.. ..++.+.+ |+||+||++|||||+ +|+|+||| |+.|
T Consensus 97 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~ 176 (250)
T PRK14262 97 PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176 (250)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 3333321111 111 112234556777777642 35777888 999999999999999 99999999 7778
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 177 LD~~~~ 182 (250)
T PRK14262 177 LDPIAT 182 (250)
T ss_pred cCHHHH
Confidence 886544
No 218
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.3e-26 Score=201.60 Aligned_cols=142 Identities=19% Similarity=0.173 Sum_probs=107.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCCC-hHHHhhccEEecCchH--
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE-DGEFLMRNGALPEERI-- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~~-~~e~~~~ig~v~Q~~~-- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++| + |+|.++|.++.... ...+++.++|+||++.
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 4578899999 99999999999999999999999999985 5 99999998875432 2345678999999864
Q ss_pred -----HHHHhcCCCC--cchHHHHHHHHHHHHhcCCcc----cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH--AAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~--~~~~~~~~~~~~~L~~l~l~~----~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... ....+....+.++++.+++.. .++..+.+ |+||+||++|||||+ +|+||||| |+.|
T Consensus 114 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~ 193 (276)
T PRK14271 114 PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193 (276)
T ss_pred CccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 3444332111 111222234456777777653 34667778 999999999999999 99999999 7778
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 194 LD~~~~ 199 (276)
T PRK14271 194 LDPTTT 199 (276)
T ss_pred CCHHHH
Confidence 886544
No 219
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=4.1e-26 Score=215.60 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=109.8
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH-HHhhccEEecCchH---------
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------- 138 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~-e~~~~ig~v~Q~~~--------- 138 (222)
.+.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .++++++||||++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 57889999 999999999999999999999999999998 9999999888544332 34567999999851
Q ss_pred --HHHHhcCCCC-------cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 139 --RAVETGGCPH-------AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 139 --~~i~~g~~~~-------~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
+++.++.... ....+....+.++++.+++. ...++.+.+ |||||||++|||||+ +|+||||| |++|+
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 3333321100 11112234577889999984 568888999 999999999999999 99999999 77788
Q ss_pred CCCcc
Q 027509 206 KIPRK 210 (222)
Q Consensus 206 d~p~K 210 (222)
|...+
T Consensus 427 D~~~~ 431 (501)
T PRK10762 427 DVGAK 431 (501)
T ss_pred CHhHH
Confidence 86654
No 220
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=1.6e-26 Score=193.19 Aligned_cols=131 Identities=11% Similarity=0.004 Sum_probs=101.4
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~ 140 (222)
+++ ++|+ ++|++++|+|+||||||||+++|+|+++|+ |+|.++|.++.... .+.++|++|++. ++
T Consensus 16 l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~~~~~~~~~~~tv~~~ 90 (195)
T PRK13541 16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYIGHNLGLKLEMTVFEN 90 (195)
T ss_pred EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEeccCCcCCCccCCHHHH
Confidence 444 9999 999999999999999999999999999998 99999998874321 345899988752 23
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+.+..... .....+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 91 l~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 91 LKFWSEIY----NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred HHHHHHhc----ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 32211100 1123455677888887777888888 999999999999999 99999999 5668875543
No 221
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.2e-26 Score=198.32 Aligned_cols=141 Identities=14% Similarity=0.112 Sum_probs=105.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC--C---C-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~--p---~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++++++|+ ++|++++|+||||||||||+++|+|++. | + |+|.++|.++... ...++++.++|+||++.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 478899999 9999999999999999999999999875 2 3 9999999987543 23455678999999864
Q ss_pred -----HHHHhcCCCCc--chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~~--~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++..... ...+....+.++++.+++. ...+..+.+ |+||+||++|||||+ +|+|+||| |+.|
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 179 (253)
T PRK14261 100 PKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSA 179 (253)
T ss_pred cccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 33333211110 1112223455667776653 235777788 999999999999999 99999999 7778
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 180 LD~~~~ 185 (253)
T PRK14261 180 LDPIAT 185 (253)
T ss_pred CCHHHH
Confidence 886544
No 222
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.8e-26 Score=197.44 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=105.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCCC--ChHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~- 138 (222)
..++++++|+ .+|++++|+|+||||||||+++|+|+++ |+ |+|.++|.++... ...++++.++|++|++.
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 3578899999 9999999999999999999999999987 35 9999999887431 22345667999999864
Q ss_pred ------HHHHhcCCCC-cchHH-HHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ------RAVETGGCPH-AAIRE-DISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ------~~i~~g~~~~-~~~~~-~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.++.... ....+ ....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~ 176 (251)
T PRK14251 97 FPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176 (251)
T ss_pred CCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCc
Confidence 3333321100 00011 123455677777763 345777788 999999999999999 99999999 677
Q ss_pred CCCCCcc
Q 027509 204 GDKIPRK 210 (222)
Q Consensus 204 G~d~p~K 210 (222)
|+|...+
T Consensus 177 ~LD~~~~ 183 (251)
T PRK14251 177 ALDPISS 183 (251)
T ss_pred cCCHHHH
Confidence 8876544
No 223
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.93 E-value=4.2e-26 Score=216.26 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=104.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++. +
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~ 414 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAE 414 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHH
Confidence 3678999999 999999999999999999999999999998 999999999988878888899999999986 6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcC----CC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLL----CE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~----~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++.. ... .+ ...++++..++. ..+|..+ .. |||||||++|||||+ +|+|+||| +|+++
T Consensus 415 Ni~~~~~-~~~-~~---~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~l 489 (529)
T TIGR02857 415 NIRLARP-DAS-DA---EIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL 489 (529)
T ss_pred HHhccCC-CCC-HH---HHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 6666532 221 11 222333333322 1233333 33 999999999999999 99999999 55566
Q ss_pred CC
Q 027509 206 KI 207 (222)
Q Consensus 206 d~ 207 (222)
|.
T Consensus 490 D~ 491 (529)
T TIGR02857 490 DA 491 (529)
T ss_pred CH
Confidence 64
No 224
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=2.6e-26 Score=218.25 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=109.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHH---HhhccEEecCchH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGE---FLMRNGALPEERI------ 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e---~~~~ig~v~Q~~~------ 138 (222)
..++++++|+ ++|++++|+||||||||||+++|+|+++.+|+|+++|.++...+..+ ++++++|+||++.
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 3578899999 99999999999999999999999999963499999998875443322 3567999999862
Q ss_pred ----HHHHhcCCCC---cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 ----RAVETGGCPH---AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 ----~~i~~g~~~~---~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+++.++...+ ....+....+.++|+.+++. ...++.+.+ ||||||||+|||||+ +|+||||| |++|+|.
T Consensus 379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 3333321101 11122234567789999986 467888999 999999999999999 99999999 7777776
Q ss_pred Ccc
Q 027509 208 PRK 210 (222)
Q Consensus 208 p~K 210 (222)
..+
T Consensus 459 ~~~ 461 (529)
T PRK15134 459 TVQ 461 (529)
T ss_pred HHH
Confidence 543
No 225
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.3e-26 Score=195.84 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=105.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCC-CChHHHhhccEEecCchH--
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT-KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~-~~~~e~~~~ig~v~Q~~~-- 138 (222)
..++.+++|+ ++|++++|+||||||||||+++|+|+++| + |+|.++|.++.. .+...+++.++|+||++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 3478899999 99999999999999999999999999985 4 999999988742 234455678999999864
Q ss_pred -----HHHHhcCCCC-cchH-HHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH-AAIR-EDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~-~~~~-~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... .... ...+.+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|
T Consensus 96 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 175 (249)
T PRK14253 96 PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSA 175 (249)
T ss_pred cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3333321111 1111 1123445566666653 345677788 999999999999999 99999999 7777
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 176 LD~~~~ 181 (249)
T PRK14253 176 LDPIAT 181 (249)
T ss_pred CCHHHH
Confidence 876544
No 226
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=4.3e-26 Score=212.02 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=122.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~------- 138 (222)
..+..++||+ .+|||.+|+|+|||||||||++|.|+++|+ |+|.++|+.+...++.+. +..||+|+|.+.
T Consensus 17 ~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV 96 (501)
T COG3845 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV 96 (501)
T ss_pred EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccch
Confidence 3467889999 999999999999999999999999999999 999999999877777654 558999999986
Q ss_pred -HHHHhcCCCC----cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCCc
Q 027509 139 -RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIPR 209 (222)
Q Consensus 139 -~~i~~g~~~~----~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p~ 209 (222)
+|+.+|..+. ...++..+++.++.+++++.-..+.++.+ |-|+||||+|.+||. +++++|||||+..-.|.
T Consensus 97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~ 174 (501)
T COG3845 97 AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174 (501)
T ss_pred hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 7777776542 23455567788899999999999999999 999999999999999 99999999999887663
No 227
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.93 E-value=4.1e-26 Score=223.41 Aligned_cols=134 Identities=14% Similarity=0.087 Sum_probs=104.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|+.++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||||++. +
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~e 571 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRD 571 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHH
Confidence 4678999999 999999999999999999999999999998 999999999988888889999999999986 6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCC-------cccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l-------~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++. +.... + .+.++++..++ ...++..+.+ |||||||++|||||+ +|+|+||| +|+++
T Consensus 572 Ni~l~~-~~~~~-~---~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~L 646 (710)
T TIGR03796 572 NLTLWD-PTIPD-A---DLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSAL 646 (710)
T ss_pred HhhCCC-CCCCH-H---HHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccC
Confidence 666542 22221 1 12222222222 1233444432 999999999999999 99999999 55556
Q ss_pred CC
Q 027509 206 KI 207 (222)
Q Consensus 206 d~ 207 (222)
|.
T Consensus 647 D~ 648 (710)
T TIGR03796 647 DP 648 (710)
T ss_pred CH
Confidence 53
No 228
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.5e-26 Score=197.72 Aligned_cols=141 Identities=15% Similarity=0.100 Sum_probs=105.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcC---cCC--C-CcEEEeeccCCCCC--hHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF---LRD--K-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gl---l~p--~-G~I~i~g~di~~~~--~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+ ++| + |+|.++|.++.... ...+++.++|+||++.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPF 96 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccC
Confidence 467899999 99999999999999999999999997 454 4 99999999885422 2455678999999864
Q ss_pred -----HHHHhcCCCC-c-chHHHHHHHHHHHHhcCCcc----cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH-A-AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~-~-~~~~~~~~~~~~L~~l~l~~----~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... . ........+.++++.+++.. ..+..+.+ |+|||||++|||||+ +|+|+||| |+.|
T Consensus 97 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 176 (250)
T PRK14245 97 PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176 (250)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 3333221100 0 01112245667788887743 45677788 999999999999999 99999999 7777
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 177 LD~~~~ 182 (250)
T PRK14245 177 LDPIST 182 (250)
T ss_pred CCHHHH
Confidence 775543
No 229
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.3e-26 Score=199.19 Aligned_cols=141 Identities=16% Similarity=0.102 Sum_probs=105.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCC--CChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ .+|++++|+|+|||||||||++|+|+++| + |+|.++|.++.. .....+++.++|+||++.
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 477899999 99999999999999999999999999884 4 999999988743 222345668999999864
Q ss_pred -----HHHHhcCCCC--cchHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~--~~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... ....+....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|
T Consensus 101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 180 (259)
T PRK14260 101 PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180 (259)
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 3333221100 01111223455677777663 356777888 999999999999999 99999999 6668
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 181 LD~~~~ 186 (259)
T PRK14260 181 LDPIAT 186 (259)
T ss_pred CCHHHH
Confidence 886544
No 230
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=6e-26 Score=190.96 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=98.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------HH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~ 140 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++......+.++.++|+||++. ++
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~ 101 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN 101 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence 578899999 999999999999999999999999999998 999999998765555566678999999874 22
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+.+.. ... ...+.+.++ .+..+.+ |+||+||++|||||+ +|+|+||| |+.|+|...
T Consensus 102 l~~~~----~~~--~~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 160 (207)
T cd03369 102 LDPFD----EYS--DEEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160 (207)
T ss_pred hcccC----CCC--HHHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 21110 010 111222332 3556677 999999999999999 99999999 777777553
No 231
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.6e-26 Score=200.65 Aligned_cols=142 Identities=17% Similarity=0.117 Sum_probs=105.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCC--CChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~-- 138 (222)
.++++++|+ ++|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++.. ....++++.++|+||++.
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 117 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF 117 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccc
Confidence 478899999 9999999999999999999999999987 56 999999988742 223455678999999864
Q ss_pred -----HHHHhcCCCC-cchH-HHHHHHHHHHHhcC----CcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH-AAIR-EDISINLGPLEELS----NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~-~~~~-~~~~~~~~~L~~l~----l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... .... .....+.++++.++ +....+..+.+ |+|||||++|||||+ +|+||||| |+.|
T Consensus 118 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~ 197 (271)
T PRK14238 118 PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSA 197 (271)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 3443321111 1111 11233445555553 23345777888 999999999999999 99999999 7778
Q ss_pred CCCCccC
Q 027509 205 DKIPRKG 211 (222)
Q Consensus 205 ~d~p~K~ 211 (222)
+|...+.
T Consensus 198 LD~~~~~ 204 (271)
T PRK14238 198 LDPISTL 204 (271)
T ss_pred CCHHHHH
Confidence 8866543
No 232
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.8e-26 Score=215.13 Aligned_cols=141 Identities=21% Similarity=0.182 Sum_probs=110.6
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH-HHhhccEEecCchH---------
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------- 138 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~-e~~~~ig~v~Q~~~--------- 138 (222)
++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.++|+||++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 347 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHS 347 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCC
Confidence 67889999 999999999999999999999999999998 9999999887543333 34567999999852
Q ss_pred --HHHHhcCCCCc-------chHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 139 --RAVETGGCPHA-------AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 139 --~~i~~g~~~~~-------~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
+++.++..... ...+..+.+.++++.+++. ...++.+.+ ||||||||+|||||+ +|+||||| |+.|+
T Consensus 348 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~L 427 (501)
T PRK11288 348 VADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427 (501)
T ss_pred HHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCC
Confidence 33333221110 1112234567789999984 567888999 999999999999999 99999999 78888
Q ss_pred CCCccC
Q 027509 206 KIPRKG 211 (222)
Q Consensus 206 d~p~K~ 211 (222)
|...+.
T Consensus 428 D~~~~~ 433 (501)
T PRK11288 428 DVGAKH 433 (501)
T ss_pred CHhHHH
Confidence 876553
No 233
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.3e-26 Score=197.58 Aligned_cols=145 Identities=21% Similarity=0.164 Sum_probs=118.1
Q ss_pred CCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh-HHHhhccEEecCchH----
Q 027509 66 SRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI---- 138 (222)
Q Consensus 66 ~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~-~e~~~~ig~v~Q~~~---- 138 (222)
.+..+++.+++|+ ++||-++|+|||||||||||++|+|.+.|+ |.+.+.|..+-..+. .++|++||+|.-+..
T Consensus 41 r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~ 120 (257)
T COG1119 41 RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120 (257)
T ss_pred ECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcc
Confidence 3456788999999 999999999999999999999999999998 999999988765555 788999999964322
Q ss_pred ------HHHHhc------CCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ------RAVETG------GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ------~~i~~g------~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+.+..| .+......++..++..+++.+++....++++.+ |-||||||.|||||+ +|+++||| |+.
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~ 200 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200 (257)
T ss_pred cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence 111111 111112244567788899999999999999999 999999999999999 99999999 788
Q ss_pred CCCCCcc
Q 027509 204 GDKIPRK 210 (222)
Q Consensus 204 G~d~p~K 210 (222)
|+|...|
T Consensus 201 GLDl~~r 207 (257)
T COG1119 201 GLDLIAR 207 (257)
T ss_pred cCChHHH
Confidence 9996555
No 234
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.1e-26 Score=197.12 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=106.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEee------ccCCCCChHHHhhccEEecCchH--
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT------NDIFTKEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g------~di~~~~~~e~~~~ig~v~Q~~~-- 138 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++| .++...+..++++.++|+||++.
T Consensus 23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (257)
T PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPF 102 (257)
T ss_pred ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccC
Confidence 4578899999 999999999999999999999999999987 8777665 44433344456678999999864
Q ss_pred ------HHHHhcCCCC-c-chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ------RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ------~~i~~g~~~~-~-~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.++.... . ...+....+.++++.+++. ...+..+.. |+|||||++|||||+ +|+|+||| |+.
T Consensus 103 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~ 182 (257)
T PRK14246 103 PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182 (257)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 3343321111 1 1112234566788888874 345777788 999999999999999 99999999 777
Q ss_pred CCCCCc
Q 027509 204 GDKIPR 209 (222)
Q Consensus 204 G~d~p~ 209 (222)
|+|...
T Consensus 183 ~LD~~~ 188 (257)
T PRK14246 183 MIDIVN 188 (257)
T ss_pred cCCHHH
Confidence 887653
No 235
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.2e-26 Score=199.13 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=103.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ .+||+++|+|||||||||||++|+|++++ + |+|.++|.++... ....++++++|+||++.
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~ 113 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF 113 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence 478899999 99999999999999999999999999862 4 9999999887532 22345678999999854
Q ss_pred -----HHHHhcCCCCcchHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 -----RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 -----~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++.++.............+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+||||| |+.|+|
T Consensus 114 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD 193 (274)
T PRK14265 114 PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193 (274)
T ss_pred cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 333322111000011122344556666542 345777788 999999999999999 99999999 777887
Q ss_pred CCcc
Q 027509 207 IPRK 210 (222)
Q Consensus 207 ~p~K 210 (222)
...+
T Consensus 194 ~~~~ 197 (274)
T PRK14265 194 PIST 197 (274)
T ss_pred HHHH
Confidence 5543
No 236
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=6.4e-26 Score=217.71 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=106.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.|+||||++. +
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 432 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRD 432 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHH
Confidence 4678999999 999999999999999999999999999998 999999999988888888899999999986 5
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCccc------ccCcC----CC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFK------ADLLL----CE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~------~d~~~----~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
|+.++. +... .+.+.++++.+++.+. +|..+ .. |||||||++|||||+ +|+|+||| +|+++|
T Consensus 433 Ni~~~~-~~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD 507 (574)
T PRK11160 433 NLLLAA-PNAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLD 507 (574)
T ss_pred HhhcCC-CccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 555543 2211 1234445555554432 23332 33 999999999999999 99999999 556666
Q ss_pred C
Q 027509 207 I 207 (222)
Q Consensus 207 ~ 207 (222)
.
T Consensus 508 ~ 508 (574)
T PRK11160 508 A 508 (574)
T ss_pred H
Confidence 3
No 237
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.2e-26 Score=196.45 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=102.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC------CCcEEEeeccCCC--CChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p------~G~I~i~g~di~~--~~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++| +|+|.++|.++.. .....+++.++|+||++.
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 478899999 99999999999999999999999999875 3999999988753 223345668999999864
Q ss_pred ------HHHHhcCC-CCcchH-HHHHHHHHHHHhcCC----cccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ------RAVETGGC-PHAAIR-EDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ------~~i~~g~~-~~~~~~-~~~~~~~~~L~~l~l----~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.++.. ...... +..+.+.+.++.+++ ....++.+.+ |+||+||++|||||+ +|+|+||| |+.
T Consensus 98 ~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 177 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTS 177 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 33332211 101011 112334445555543 2345777888 999999999999999 99999999 777
Q ss_pred CCCCCcc
Q 027509 204 GDKIPRK 210 (222)
Q Consensus 204 G~d~p~K 210 (222)
|+|...+
T Consensus 178 ~LD~~~~ 184 (252)
T PRK14272 178 ALDPAST 184 (252)
T ss_pred cCCHHHH
Confidence 7775443
No 238
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.5e-26 Score=196.34 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=104.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc--CC---C-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--RD---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll--~p---~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|++ .| + |+|.++|.++... ....+++.++|+||++.
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 478899999 999999999999999999999999985 35 4 9999999887432 22344567999999864
Q ss_pred -----HHHHhcCCC-CcchH-HHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCP-HAAIR-EDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~-~~~~~-~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++... ..... .....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+||||| |+.|
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 178 (252)
T PRK14239 99 PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178 (252)
T ss_pred cCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 344332110 01111 1223455677777653 345777888 999999999999999 99999999 7778
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 179 LD~~~~ 184 (252)
T PRK14239 179 LDPISA 184 (252)
T ss_pred cCHHHH
Confidence 886544
No 239
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.5e-26 Score=197.42 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=106.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCCC--ChHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~- 138 (222)
.+++.+++|+ .+|++++|+|||||||||||++|+|+++ |+ |+|.++|.++... +...+++.++|+||++.
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 4578899999 9999999999999999999999999986 46 9999999887431 23345678999999864
Q ss_pred ------HHHHhcCCCC-c-chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ------RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ------~~i~~g~~~~-~-~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+|+.++.... . ...+....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+++||| |+.
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 192 (267)
T PRK14237 113 FAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPAS 192 (267)
T ss_pred ccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3443321110 0 1111224456677887763 346778888 999999999999999 99999999 777
Q ss_pred CCCCCc
Q 027509 204 GDKIPR 209 (222)
Q Consensus 204 G~d~p~ 209 (222)
|+|...
T Consensus 193 ~LD~~~ 198 (267)
T PRK14237 193 ALDPIS 198 (267)
T ss_pred cCCHHH
Confidence 777543
No 240
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.6e-26 Score=196.11 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=104.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC------CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK------YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~------G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++... ....+++.++|+||++.
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 477899999 999999999999999999999999999984 9999999887532 22345678999999875
Q ss_pred -----HHHHhcCCCC-cchHH-HHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH-AAIRE-DISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~-~~~~~-~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+|+.+..... ....+ ....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+++||| |+.|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 177 (251)
T PRK14249 98 PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177 (251)
T ss_pred cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 3343321111 01111 123345556666643 346777888 999999999999999 99999999 6668
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 178 LD~~~~ 183 (251)
T PRK14249 178 LDPVST 183 (251)
T ss_pred CCHHHH
Confidence 886543
No 241
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=4.2e-26 Score=216.84 Aligned_cols=141 Identities=12% Similarity=0.100 Sum_probs=108.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCCChHH---Hh-hccEEecCchH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~~~~e---~~-~~ig~v~Q~~~ 138 (222)
.++.+++|+ .+||+++|+|||||||||||++|+|+++| + |+|.++|.++...+..+ .+ ++++|+||++.
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 578999999 99999999999999999999999999986 5 99999999886544332 22 47999999863
Q ss_pred ----------HHHHhcC--CCCcchHHHHHHHHHHHHhcCCcc---cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-
Q 027509 139 ----------RAVETGG--CPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (222)
Q Consensus 139 ----------~~i~~g~--~~~~~~~~~~~~~~~~L~~l~l~~---~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD- 200 (222)
+++.+.. .......+...++.++++.+++.. ..++.+.+ ||||||||+|||||+ +|+|||||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE 182 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1121110 001111233456778899999864 35888888 999999999999999 99999999
Q ss_pred cCCCCCCCcc
Q 027509 201 VSGGDKIPRK 210 (222)
Q Consensus 201 ~t~G~d~p~K 210 (222)
|++++|...+
T Consensus 183 Pt~~LD~~~~ 192 (529)
T PRK15134 183 PTTALDVSVQ 192 (529)
T ss_pred CCCccCHHHH
Confidence 7777775543
No 242
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5e-26 Score=191.64 Aligned_cols=126 Identities=16% Similarity=0.126 Sum_probs=98.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC---CC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHh
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~---p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~ 143 (222)
..++.+++|+ ++|++++|+||||||||||+++|+|+++ |+ |+|.++|.++.... ...++.++|+||++.
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~~i~~~~q~~~----- 93 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPGEIIYVSEEDV----- 93 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcceEEEEecccc-----
Confidence 3578899999 9999999999999999999999999999 77 99999999875432 345668999999742
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 144 g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
..+...+++....... +. .+..+.+ |+||+||++|||||+ +|+|+||| |+.|+|...
T Consensus 94 -~~~~~tv~~~l~~~~~----~~----~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~ 153 (202)
T cd03233 94 -HFPTLTVRETLDFALR----CK----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153 (202)
T ss_pred -cCCCCcHHHHHhhhhh----hc----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHH
Confidence 1223344444322111 11 4566777 999999999999999 99999999 777887553
No 243
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.93 E-value=8.4e-26 Score=213.17 Aligned_cols=143 Identities=18% Similarity=0.210 Sum_probs=110.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-C-CcEEEeeccCCCCCh-HHHhhccEEecCchH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTKED-GEFLMRNGALPEERI------ 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-~-G~I~i~g~di~~~~~-~e~~~~ig~v~Q~~~------ 138 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++| + |+|.++|.++...+. ..++++++|+||++.
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 3578899999 99999999999999999999999999985 5 999999988753332 345668999999851
Q ss_pred -----HHHHhcCCC-C-----cchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 -----RAVETGGCP-H-----AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 -----~~i~~g~~~-~-----~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.++... . ....+....+.++++.+++.. ..++.+.+ |||||||++|||||+ +|+||||| |+.
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 432 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 233332110 0 011122345678899999864 57888999 999999999999999 99999999 777
Q ss_pred CCCCCccC
Q 027509 204 GDKIPRKG 211 (222)
Q Consensus 204 G~d~p~K~ 211 (222)
|+|...+.
T Consensus 433 ~LD~~~~~ 440 (500)
T TIGR02633 433 GVDVGAKY 440 (500)
T ss_pred CcCHhHHH
Confidence 88866543
No 244
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.93 E-value=2.1e-25 Score=192.12 Aligned_cols=140 Identities=14% Similarity=0.034 Sum_probs=103.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc--CCC-CcEEEeeccCCCCChHHHh-hccEEecCchHH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIR----- 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll--~p~-G~I~i~g~di~~~~~~e~~-~~ig~v~Q~~~~----- 139 (222)
.++++++|+ ++|++++|+|||||||||||++|+|++ +|+ |+|.++|.++...+....+ ..++|++|++..
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 94 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS 94 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchh
Confidence 478899999 999999999999999999999999995 577 9999999888654444433 469999998641
Q ss_pred ---HHHhcCCC---C--c---chHHHHHHHHHHHHhcCCc-ccccCcCC-C-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 140 ---AVETGGCP---H--A---AIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 140 ---~i~~g~~~---~--~---~~~~~~~~~~~~L~~l~l~-~~~d~~~~-e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+..+.... . . ...+....+.+.++.+++. ...++.+. + |+|||||++|||||+ +|+|+||| |++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~ 174 (248)
T PRK09580 95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDS 174 (248)
T ss_pred HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 11111000 0 0 0011123456677888774 34556564 6 999999999999999 99999999 777
Q ss_pred CCCCCc
Q 027509 204 GDKIPR 209 (222)
Q Consensus 204 G~d~p~ 209 (222)
|+|...
T Consensus 175 ~LD~~~ 180 (248)
T PRK09580 175 GLDIDA 180 (248)
T ss_pred cCCHHH
Confidence 887653
No 245
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.6e-26 Score=200.61 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=104.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|+++ |+ |+|.++|.++... ....++++++|+||++.
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 132 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPF 132 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCC
Confidence 477899999 9999999999999999999999999864 36 9999999887432 12345668999999864
Q ss_pred -----HHHHhcCCCC-c-chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~-~-~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... . ........+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+||||| |+.|
T Consensus 133 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~g 212 (286)
T PRK14275 133 PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSA 212 (286)
T ss_pred ccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 3343321110 0 1111223455667777652 356777888 999999999999999 99999999 6668
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 213 LD~~~~ 218 (286)
T PRK14275 213 LDPKAT 218 (286)
T ss_pred CCHHHH
Confidence 875543
No 246
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.93 E-value=1.4e-25 Score=193.80 Aligned_cols=141 Identities=16% Similarity=0.049 Sum_probs=106.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcC--cCCC-CcEEEeeccCCCCChHHHhh-ccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gl--l~p~-G~I~i~g~di~~~~~~e~~~-~ig~v~Q~~~------ 138 (222)
.++++++|+ .+|++++|+|+||||||||+++|+|+ ++|+ |+|.++|.++.........+ .++|+||++.
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 100 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVS 100 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccccc
Confidence 478899999 99999999999999999999999998 5677 99999999886544433333 4789999853
Q ss_pred --HHHHhcCCCC--------cchHHHHHHHHHHHHhcCCc-ccccCcCC-C-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 --RAVETGGCPH--------AAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 --~~i~~g~~~~--------~~~~~~~~~~~~~L~~l~l~-~~~d~~~~-e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.+..... ....+....+.++++.+++. ...++.+. . |+||+||++|||||+ +|+|+||| |+.
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 180 (252)
T CHL00131 101 NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDS 180 (252)
T ss_pred HHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 2332221110 01112234566788888886 35677775 5 999999999999999 99999999 777
Q ss_pred CCCCCcc
Q 027509 204 GDKIPRK 210 (222)
Q Consensus 204 G~d~p~K 210 (222)
|+|...+
T Consensus 181 ~LD~~~~ 187 (252)
T CHL00131 181 GLDIDAL 187 (252)
T ss_pred cCCHHHH
Confidence 8886543
No 247
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=6.1e-26 Score=214.73 Aligned_cols=140 Identities=19% Similarity=0.120 Sum_probs=109.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC--CCCChHHHhhccEEecCchHHH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI--FTKEDGEFLMRNGALPEERIRA---- 140 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di--~~~~~~e~~~~ig~v~Q~~~~~---- 140 (222)
..+++++||+ .+||++||+|++|||||||.|+|+|+++|+ |.|.++|.+. ...+....++++-+|||+|...
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence 3567899999 999999999999999999999999999998 9999999872 2122234566889999998721
Q ss_pred ------HHh--cCCCCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCC
Q 027509 141 ------VET--GGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIP 208 (222)
Q Consensus 141 ------i~~--g~~~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p 208 (222)
+.- .........+..+++.++|+.+++.. .+++++.+ |||||||++|||||+ +|+|+|+|||++.-+|
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 110 00011112233356788899999886 69999999 999999999999999 9999999988876544
No 248
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.93 E-value=7.2e-26 Score=215.96 Aligned_cols=135 Identities=19% Similarity=0.190 Sum_probs=104.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+.+++++|+ ++|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..+++++++|+||++. +
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 424 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIAN 424 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHH
Confidence 4578999999 999999999999999999999999999998 999999999987778888899999999987 6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcCC----C-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLC----E-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~~----e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++....... +...++++.+++. ..+|..+. . |||||||++|||||+ +|+|+||| ||+++
T Consensus 425 Ni~~~~~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~L 500 (571)
T TIGR02203 425 NIAYGRTEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSAL 500 (571)
T ss_pred HHhcCCCCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 666553212211 1222333333322 22344333 2 999999999999999 99999999 55555
Q ss_pred CC
Q 027509 206 KI 207 (222)
Q Consensus 206 d~ 207 (222)
|.
T Consensus 501 D~ 502 (571)
T TIGR02203 501 DN 502 (571)
T ss_pred CH
Confidence 53
No 249
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=1.2e-25 Score=213.22 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=109.2
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH-HhhccEEecCchH---------
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------- 138 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e-~~~~ig~v~Q~~~--------- 138 (222)
.+.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+... ++++++|+||++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 47789999 999999999999999999999999999998 99999998886544433 3457999999741
Q ss_pred --HHHHhcC---CCC-cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 --RAVETGG---CPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 --~~i~~g~---~~~-~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+++.... ... ....+....+.++|+.+++. ...++.+.+ |||||||++|||||+ +|+||||| |+.|+|..
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 2221110 010 01112234567789999986 578899999 999999999999999 99999999 77888876
Q ss_pred cc
Q 027509 209 RK 210 (222)
Q Consensus 209 ~K 210 (222)
.+
T Consensus 438 ~~ 439 (510)
T PRK15439 438 AR 439 (510)
T ss_pred HH
Confidence 54
No 250
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.2e-26 Score=195.22 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=105.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|++. |+ |+|.++|.++... +..+++++++|+||++.
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF 96 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence 478899999 9999999999999999999999999864 36 9999999987532 23455678999999864
Q ss_pred -----HHHHhcCCCC-cchHH-HHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCPH-AAIRE-DISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~~-~~~~~-~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.... ....+ ....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+||||| |+.|
T Consensus 97 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~g 176 (250)
T PRK14266 97 PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176 (250)
T ss_pred cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence 3333321111 11111 224556677777753 235777788 999999999999999 99999999 7778
Q ss_pred CCCCc
Q 027509 205 DKIPR 209 (222)
Q Consensus 205 ~d~p~ 209 (222)
+|...
T Consensus 177 LD~~~ 181 (250)
T PRK14266 177 LDPIS 181 (250)
T ss_pred CCHHH
Confidence 88654
No 251
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=9.2e-26 Score=186.85 Aligned_cols=121 Identities=26% Similarity=0.331 Sum_probs=93.6
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh-HHHhhccEEecCchHHHHHhcCCC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~-~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++..... ...++.++|+||++... ...+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~---~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKRE---GLVL 91 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccC---cccC
Confidence 67889999 999999999999999999999999999998 999999998865543 33456799999985310 1122
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
...+.++...... . |+||+||++|||||+ +|+|+||| |+.|+|...+
T Consensus 92 ~~t~~e~l~~~~~------------L----S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 140 (182)
T cd03215 92 DLSVAENIALSSL------------L----SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140 (182)
T ss_pred CCcHHHHHHHHhh------------c----CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHH
Confidence 2333333221100 3 999999999999999 99999999 7778886543
No 252
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.2e-26 Score=186.48 Aligned_cols=114 Identities=26% Similarity=0.381 Sum_probs=92.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
+++++++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.++|.++.... .++++.++|+||++.. .+
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~------~~ 86 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPSL------YE 86 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCCcc------cc
Confidence 478899999 999999999999999999999999999998 99999998875433 4556789999998531 22
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
...+.++.. . |+||+||++|||||+ +|+|+||| |+.++|...+
T Consensus 87 ~~tv~~~~~----------------L----S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 131 (173)
T cd03230 87 NLTVRENLK----------------L----SGGMKQRLALAQALLHDPELLILDEPTSGLDPESR 131 (173)
T ss_pred CCcHHHHhh----------------c----CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 223333221 3 999999999999999 99999999 7778876543
No 253
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=4e-26 Score=190.27 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=111.7
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC----------h---HHHhhccEEecC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----------D---GEFLMRNGALPE 135 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~----------~---~e~~~~ig~v~Q 135 (222)
.+..++++ .+|+++.|||.+||||||+||||+-+..|+ |.|.++|..|.... . ..+|.++++|||
T Consensus 21 VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ 100 (256)
T COG4598 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQ 100 (256)
T ss_pred hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhh
Confidence 67789999 899999999999999999999999999999 99999998774321 1 224568999999
Q ss_pred chH--------HHHHhcCCC--CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCC
Q 027509 136 ERI--------RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSG 203 (222)
Q Consensus 136 ~~~--------~~i~~g~~~--~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~ 203 (222)
+++ +|+.-.... .....+.++++...|..+++..+.+.++.. |||||||++|||||+ +|.++++|||+
T Consensus 101 ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPT 180 (256)
T COG4598 101 HFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPT 180 (256)
T ss_pred hcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCc
Confidence 987 222111100 112234457788899999999999999999 999999999999999 99999999888
Q ss_pred CCCCCc
Q 027509 204 GDKIPR 209 (222)
Q Consensus 204 G~d~p~ 209 (222)
+--+|-
T Consensus 181 SALDPE 186 (256)
T COG4598 181 SALDPE 186 (256)
T ss_pred ccCCHH
Confidence 766663
No 254
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=4.4e-26 Score=197.07 Aligned_cols=132 Identities=22% Similarity=0.186 Sum_probs=109.2
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~ 140 (222)
++++++|. ++|+++|++|+|||||||++|+|+|++.|+ |+|.++|.++. .+.+.+|||+|.++- +.
T Consensus 17 av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~----~~~~~rIGyLPEERGLy~k~tv~dq 92 (300)
T COG4152 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRIGYLPEERGLYPKMTVEDQ 92 (300)
T ss_pred eecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh----hhhhhhcccChhhhccCccCcHHHH
Confidence 78899999 999999999999999999999999999998 99999999884 355678999999875 22
Q ss_pred HH-hcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 141 VE-TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 141 i~-~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+. ++....+...+....+..+|+++.+.....+.+.+ |.|++|++.+..+++ +|+++||| |.+|+|
T Consensus 93 l~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLD 162 (300)
T COG4152 93 LKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162 (300)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 21 22222222344456677789999998888889999 999999999999999 99999999 555666
No 255
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.93 E-value=7.7e-26 Score=222.13 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=104.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|+++...+...++++|+||+|++. +
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIre 573 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRE 573 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHH
Confidence 4678999999 999999999999999999999999999998 999999999988888888999999999986 6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcCC----C-ChHHHHHHHHHHHHc-CCCeEEEec-CCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLC----E-SGGDNLAANFSRELA-DYIIYIIDV-SGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~~----e-SgGqkQrv~iArAL~-~p~IlILD~-t~G~ 205 (222)
|+.++.. ... .+ .+.++++..++. ..+|..+. . |||||||++|||||+ +|+|+|||| |+++
T Consensus 574 NI~~g~~-~~~-~e---~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaL 648 (711)
T TIGR00958 574 NIAYGLT-DTP-DE---EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648 (711)
T ss_pred HHhcCCC-CCC-HH---HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcccccc
Confidence 7766532 222 11 222233333321 22343333 3 999999999999999 999999995 5555
Q ss_pred CC
Q 027509 206 KI 207 (222)
Q Consensus 206 d~ 207 (222)
|.
T Consensus 649 D~ 650 (711)
T TIGR00958 649 DA 650 (711)
T ss_pred CH
Confidence 53
No 256
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.93 E-value=1.2e-25 Score=215.99 Aligned_cols=139 Identities=21% Similarity=0.269 Sum_probs=105.4
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|..+.+++++++|+ ++|++++|+|+||||||||+++|+|+++|+ |.|.++|.++...+...+++.|+||||++.
T Consensus 344 y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 423 (588)
T PRK13657 344 YDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR 423 (588)
T ss_pred eCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc
Confidence 33334578999999 999999999999999999999999999998 999999999988888888999999999986
Q ss_pred ---HHHHhcCCCCcchHHHHHHH------HHHHHhcCCcccccCcC----CC-ChHHHHHHHHHHHHc-CCCeEEEe-cC
Q 027509 139 ---RAVETGGCPHAAIREDISIN------LGPLEELSNLFKADLLL----CE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~------~~~L~~l~l~~~~d~~~----~e-SgGqkQrv~iArAL~-~p~IlILD-~t 202 (222)
+|+.++. +.... +....+ .+.+..+ ...+|..+ .. |||||||++|||||+ +|+|+||| ||
T Consensus 424 Ti~~Ni~~~~-~~~~d-~~i~~al~~~~l~~~i~~l--p~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 424 SIEDNIRVGR-PDATD-EEMRAAAERAQAHDFIERK--PDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred cHHHHHhcCC-CCCCH-HHHHHHHHHhCHHHHHHhC--cccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6776653 32221 111111 1122222 12233333 23 999999999999999 99999999 55
Q ss_pred CCCCC
Q 027509 203 GGDKI 207 (222)
Q Consensus 203 ~G~d~ 207 (222)
+++|.
T Consensus 500 s~LD~ 504 (588)
T PRK13657 500 SALDV 504 (588)
T ss_pred cCCCH
Confidence 66663
No 257
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.93 E-value=1.3e-25 Score=195.41 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=102.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHH-----H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-----E 142 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i-----~ 142 (222)
.++.+++|+ ++|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+..++++.++|+||++..+- .
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~n 114 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN 114 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHh
Confidence 478899999 999999999999999999999999999998 999999998866555667778999999875210 0
Q ss_pred hcCCCCcchHHHHH------HHHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 143 TGGCPHAAIREDIS------INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 143 ~g~~~~~~~~~~~~------~~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+...... ..+... ...+.++.+ ++....+..+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 115 l~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~ 192 (257)
T cd03288 115 LDPECKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE 192 (257)
T ss_pred cCcCCCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 1111000 111111 112233333 344445556667 999999999999999 99999999 7778885543
No 258
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.93 E-value=3.7e-26 Score=188.39 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=92.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
+++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ...+++.++|+||++.. .+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~------~~ 88 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRPYL------FD 88 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEccCCee------ec
Confidence 478899999 999999999999999999999999999998 9999999877433 34556789999997531 11
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
..++++. +.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 89 -~tv~~~i-------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~ 134 (178)
T cd03247 89 -TTLRNNL-------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITE 134 (178)
T ss_pred -ccHHHhh-------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 1222221 455 999999999999999 99999999 6668886544
No 259
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.8e-25 Score=210.08 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=118.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHh-hccEEecCchH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~-~~ig~v~Q~~~------- 138 (222)
..++.+++|+ .+||+++|+|+||||||||+|+|+|.++|+ |+|.++|+.+...++.+.. ..|..|+|+..
T Consensus 21 V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsV 100 (500)
T COG1129 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSV 100 (500)
T ss_pred ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccH
Confidence 3578899999 999999999999999999999999999999 9999999998777776654 47999999987
Q ss_pred -HHHHhcCCCCc-----chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCC
Q 027509 139 -RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGD 205 (222)
Q Consensus 139 -~~i~~g~~~~~-----~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~ 205 (222)
+|+.+|..+.. .+++....+.++|+.+++....+..+.+ |.||||.|+|||||. +++|+|||||+.-
T Consensus 101 aeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaa 175 (500)
T COG1129 101 AENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175 (500)
T ss_pred HHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 78888877643 2355567788899999875558888889 999999999999999 9999999977653
No 260
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=8.8e-26 Score=214.13 Aligned_cols=143 Identities=17% Similarity=0.079 Sum_probs=106.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEe-ecc---CCCCC---hHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TND---IFTKE---DGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~-g~d---i~~~~---~~e~~~~ig~v~Q~~~- 138 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++ +.+ +.... ...++++++|+||++.
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 376 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence 3578899999 999999999999999999999999999998 999996 542 22211 1234567999999853
Q ss_pred -------HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc-----cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 -------RAVETGGCPHAAIREDISINLGPLEELSNLF-----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 -------~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-----~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.+.........+....+.++++.+++.. ..++.+.+ |||||||++|||||+ +|+||||| |++
T Consensus 377 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~ 456 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456 (520)
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3333211001111112345677889998864 46888889 999999999999999 99999999 777
Q ss_pred CCCCCccC
Q 027509 204 GDKIPRKG 211 (222)
Q Consensus 204 G~d~p~K~ 211 (222)
|+|...+.
T Consensus 457 ~LD~~~~~ 464 (520)
T TIGR03269 457 TMDPITKV 464 (520)
T ss_pred cCCHHHHH
Confidence 88865543
No 261
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.93 E-value=1.3e-25 Score=219.42 Aligned_cols=135 Identities=22% Similarity=0.251 Sum_probs=104.6
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
..+++++++|+ ++|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||||++.
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence 34678999999 999999999999999999999999999998 999999999988888889999999999986
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCC-------cccccCcCC----C-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLC----E-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l-------~~~~d~~~~----e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+|+.++. +.... + .+.++++..++ ...++..+. . |||||||++|||||+ +|+|+||| +|++
T Consensus 557 eNi~~~~-~~~~~-~---~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~ 631 (694)
T TIGR03375 557 DNIALGA-PYADD-E---EILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSA 631 (694)
T ss_pred HHHhCCC-CCCCH-H---HHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 6666653 22221 1 12222222222 123333332 3 999999999999999 99999999 5555
Q ss_pred CCC
Q 027509 205 DKI 207 (222)
Q Consensus 205 ~d~ 207 (222)
+|.
T Consensus 632 LD~ 634 (694)
T TIGR03375 632 MDN 634 (694)
T ss_pred CCH
Confidence 653
No 262
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=1.1e-25 Score=185.10 Aligned_cols=113 Identities=26% Similarity=0.351 Sum_probs=93.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.......+++.++|+||++.. .+
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~------~~ 89 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDEL------FS 89 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCcc------cc
Confidence 477889999 999999999999999999999999999998 9999999988665555667789999998521 11
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
..+.++. . |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 90 -~tv~~~l-----------------L----S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~ 132 (173)
T cd03246 90 -GSIAENI-----------------L----SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGE 132 (173)
T ss_pred -CcHHHHC-----------------c----CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHH
Confidence 1222221 3 999999999999999 99999999 6668886644
No 263
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=1.6e-25 Score=187.98 Aligned_cols=124 Identities=23% Similarity=0.203 Sum_probs=91.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------HH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~ 140 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++| +++|+||++. +|
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~~~t~~en 85 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTIREN 85 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhccCcHHHH
Confidence 578899999 999999999999999999999999999998 9999987 5899999875 34
Q ss_pred HHhcCCCCcchHHHHHHH------HHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 141 VETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~------~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+.+... ... +..... .+.+..+ ++....+..+.+ |+|||||++|||||+ +|+++||| |++++|.-.
T Consensus 86 l~~~~~--~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 162 (204)
T cd03250 86 ILFGKP--FDE-ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162 (204)
T ss_pred hccCCC--cCH-HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 433211 111 111111 1112221 222234555677 999999999999999 99999999 667777543
No 264
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.93 E-value=1.9e-25 Score=213.11 Aligned_cols=141 Identities=15% Similarity=0.098 Sum_probs=107.8
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHH
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~ 142 (222)
|.++.+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|++|++..+-.
T Consensus 332 y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ 411 (547)
T PRK10522 332 YQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ 411 (547)
T ss_pred eCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH
Confidence 33344578999999 999999999999999999999999999998 9999999999877777888899999999863322
Q ss_pred hcCCCCcchHHHHHHHHHHHHhcCCcccccCc-----CCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 143 TGGCPHAAIREDISINLGPLEELSNLFKADLL-----LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~-----~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+-...... ...+.+.++++.+++....+.. -.. |||||||++|||||+ +|+|+||| +|+++|.
T Consensus 412 ti~~n~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~ 482 (547)
T PRK10522 412 LLGPEGKP--ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482 (547)
T ss_pred hhccccCc--hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 21111111 1223455667777665432211 124 999999999999999 99999999 6666764
No 265
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.8e-25 Score=196.09 Aligned_cols=140 Identities=15% Similarity=0.110 Sum_probs=105.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|++++ + |+|.++|.++... +...+++.++|+||++.
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 467899999 99999999999999999999999999873 5 9999999987532 23345678999999864
Q ss_pred -----HHHHhcCC-CCcchH-HHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGC-PHAAIR-EDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~-~~~~~~-~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.++.. .....+ .....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|
T Consensus 119 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~g 198 (272)
T PRK14236 119 PKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSA 198 (272)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCccc
Confidence 33333211 111111 1123456677777764 245777888 999999999999999 99999999 7778
Q ss_pred CCCCc
Q 027509 205 DKIPR 209 (222)
Q Consensus 205 ~d~p~ 209 (222)
+|...
T Consensus 199 LD~~~ 203 (272)
T PRK14236 199 LDPIS 203 (272)
T ss_pred CCHHH
Confidence 87553
No 266
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=218.14 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=107.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCC----------CCChHH---Hh-hccEE
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF----------TKEDGE---FL-MRNGA 132 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~----------~~~~~e---~~-~~ig~ 132 (222)
..++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.+++..+. .....+ ++ +.|+|
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 3578999999 999999999999999999999999999998 99999886431 112222 22 46999
Q ss_pred ecCchH----------HHHHhcCCCC--cchHHHHHHHHHHHHhcCCcc---cccCcCCC-ChHHHHHHHHHHHHc-CCC
Q 027509 133 LPEERI----------RAVETGGCPH--AAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYI 195 (222)
Q Consensus 133 v~Q~~~----------~~i~~g~~~~--~~~~~~~~~~~~~L~~l~l~~---~~d~~~~e-SgGqkQrv~iArAL~-~p~ 195 (222)
|||++. +++.++...+ ....+...++.++|+.+++.. ..++++.+ ||||||||+|||||+ +|+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 999862 3343321111 112233356778899999853 47888999 999999999999999 999
Q ss_pred eEEEe-cCCCCCCCc
Q 027509 196 IYIID-VSGGDKIPR 209 (222)
Q Consensus 196 IlILD-~t~G~d~p~ 209 (222)
||||| ||+++|...
T Consensus 189 lLllDEPt~~LD~~~ 203 (623)
T PRK10261 189 VLIADEPTTALDVTI 203 (623)
T ss_pred EEEEeCCCCccCHHH
Confidence 99999 777777654
No 267
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=194.54 Aligned_cols=141 Identities=13% Similarity=0.090 Sum_probs=102.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC--C---C-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~--p---~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++++++|+ .+|++++|+|||||||||||++|+|+++ | + |+|.++|.++... ....+++.++|+||++.
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF 98 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence 478899999 9999999999999999999999999875 4 4 9999999887431 22344568999999854
Q ss_pred -----HHHHhcCC-CCcchHH-HHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGC-PHAAIRE-DISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~-~~~~~~~-~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.+... ......+ ....+.+.++.+++. ...+..+.+ |+||+||++|||||+ +|+|+||| |++|
T Consensus 99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~ 178 (252)
T PRK14255 99 PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA 178 (252)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 33332211 0001111 112344556666542 345777888 999999999999999 99999999 7778
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 179 LD~~~~ 184 (252)
T PRK14255 179 LDPISS 184 (252)
T ss_pred CCHHHH
Confidence 886544
No 268
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=2.5e-26 Score=189.47 Aligned_cols=148 Identities=18% Similarity=0.159 Sum_probs=119.4
Q ss_pred CCCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--
Q 027509 63 GYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 63 g~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-- 138 (222)
||.....+++++++|+ .+||+++|+||+|||||||+|++|.++.|+ |.+++.|++++...+.++|+.++|+-|.+.
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 4445567788999999 999999999999999999999999999998 999999999999999999999999999876
Q ss_pred -----HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCC-CCCCCc
Q 027509 139 -----RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSG-GDKIPR 209 (222)
Q Consensus 139 -----~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~-G~d~p~ 209 (222)
.|+.|...-+ ..+-+...+...|+++.+.. .+++.+.+ ||||+||++|+|-|. -|+|++|||++ -+|...
T Consensus 90 g~tVeDNlifP~~~r-~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~n 168 (223)
T COG4619 90 GDTVEDNLIFPWQIR-NRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168 (223)
T ss_pred ccchhhccccchHHh-ccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhh
Confidence 2222211100 11224566778899998865 57777777 999999999999999 99999999554 555555
Q ss_pred cC
Q 027509 210 KG 211 (222)
Q Consensus 210 K~ 211 (222)
|.
T Consensus 169 kr 170 (223)
T COG4619 169 KR 170 (223)
T ss_pred HH
Confidence 54
No 269
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-25 Score=185.46 Aligned_cols=116 Identities=23% Similarity=0.276 Sum_probs=92.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC--hHHHhhccEEecCchHHHHHhcC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIRAVETGG 145 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~--~~e~~~~ig~v~Q~~~~~i~~g~ 145 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+ ...+++.++|+||++..
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~------ 87 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFAL------ 87 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCcc------
Confidence 477889999 999999999999999999999999999998 99999999876543 34566789999998531
Q ss_pred CCCcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
.+...+.++. ... . |+||+||++|||||+ +|+++||| |+.|+|...
T Consensus 88 ~~~~t~~~~l----------~~~----l----S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~ 135 (178)
T cd03229 88 FPHLTVLENI----------ALG----L----SGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135 (178)
T ss_pred CCCCCHHHhe----------eec----C----CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 1222222221 100 3 999999999999999 99999999 777888654
No 270
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-25 Score=184.54 Aligned_cols=113 Identities=23% Similarity=0.319 Sum_probs=92.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
.++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.......+++.++|+||++.. .+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~------~~ 89 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL------FS 89 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchh------cc
Confidence 478899999 999999999999999999999999999998 9999999887655455666789999998621 11
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
..+.++. . |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 90 -~t~~e~l-----------------L----S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~ 132 (171)
T cd03228 90 -GTIRENI-----------------L----SGGQRQRIAIARALLRDPPILILDEATSALDPETE 132 (171)
T ss_pred -chHHHHh-----------------h----CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHH
Confidence 1222211 3 999999999999999 99999999 6668886543
No 271
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=2e-25 Score=197.13 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=105.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH-------HH
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~ 140 (222)
.+++++++|+ ++||+++|+|+|||||||||++|+|+++++|+|.++|.++...+..+++++|+|+||++. +|
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 3578999999 999999999999999999999999999855999999999876666777889999999985 33
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCC-----------C-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLC-----------E-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~-----------e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+.... . .. ...+.++++.+++....+.++. . |+||+||++|||||+ +|+|+||| |+.++|
T Consensus 97 l~~~~-~---~~--~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD 170 (275)
T cd03289 97 LDPYG-K---WS--DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170 (275)
T ss_pred hhhcc-C---CC--HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 32111 0 11 1234556677777654444442 3 999999999999999 99999999 666777
Q ss_pred CC
Q 027509 207 IP 208 (222)
Q Consensus 207 ~p 208 (222)
.-
T Consensus 171 ~~ 172 (275)
T cd03289 171 PI 172 (275)
T ss_pred HH
Confidence 54
No 272
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=9.2e-26 Score=213.97 Aligned_cols=142 Identities=17% Similarity=0.177 Sum_probs=106.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc--CCC-CcEEEe-----------------------eccCC--
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAV-----------------------TNDIF-- 119 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll--~p~-G~I~i~-----------------------g~di~-- 119 (222)
..++++++|+ .+|++++|+|||||||||||++|+|++ +|+ |+|.++ |.++.
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 3578899999 999999999999999999999999997 687 999987 22221
Q ss_pred -----CCCh---HHHhhccEEecCch-H--------HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChH
Q 027509 120 -----TKED---GEFLMRNGALPEER-I--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGG 180 (222)
Q Consensus 120 -----~~~~---~e~~~~ig~v~Q~~-~--------~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgG 180 (222)
.... ..+++.++|+||++ . +++.++... .....+...++.++++.+++....++.+.+ |||
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 172 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGG 172 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHH
Confidence 0011 23356799999962 2 344332111 111123335677889999998778888999 999
Q ss_pred HHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 181 DNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 181 qkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
|||||+|||||+ +|+||||| |++++|...+
T Consensus 173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~ 204 (520)
T TIGR03269 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTA 204 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHH
Confidence 999999999999 99999999 6777775543
No 273
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.8e-25 Score=198.38 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=106.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCCC--ChHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~- 138 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++ |+ |+|.++|.++... +...+++.++|+||++.
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 137 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNP 137 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcc
Confidence 3578899999 9999999999999999999999999986 56 9999999887532 23445678999999864
Q ss_pred ------HHHHhcCCCC-------------cc-hHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-
Q 027509 139 ------RAVETGGCPH-------------AA-IREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA- 192 (222)
Q Consensus 139 ------~~i~~g~~~~-------------~~-~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~- 192 (222)
+++.++.... .. .......+.++++.+++. ...+..+.+ |+||+||++|||||+
T Consensus 138 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~ 217 (305)
T PRK14264 138 FPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV 217 (305)
T ss_pred ccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc
Confidence 3343321110 00 011224456677777763 345777888 999999999999999
Q ss_pred CCCeEEEe-cCCCCCCCcc
Q 027509 193 DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 193 ~p~IlILD-~t~G~d~p~K 210 (222)
+|+||||| |+.|+|...+
T Consensus 218 ~p~lLLLDEPtsgLD~~~~ 236 (305)
T PRK14264 218 DPEVILMDEPASALDPIAT 236 (305)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 99999999 7788886544
No 274
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=1.9e-25 Score=190.83 Aligned_cols=135 Identities=19% Similarity=0.068 Sum_probs=102.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-HHHHhcC
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETGG 145 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-~~i~~g~ 145 (222)
..++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.. ....+++.+.... +++.+..
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-----~~~~~~~~~~~tv~enl~~~~ 109 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-----LGLGGGFNPELTGRENIYLNG 109 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh-----hcccccCCCCCcHHHHHHHHH
Confidence 4578899999 999999999999999999999999999998 999999987631 1122344443222 4544331
Q ss_pred CC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 146 CP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 146 ~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
.. .....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |++|+|..
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~ 176 (224)
T cd03220 110 RLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176 (224)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 11 111122234566778888888888888888 999999999999999 99999999 66788854
No 275
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.93 E-value=5.2e-26 Score=197.98 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=100.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHH------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------V 141 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~------i 141 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.+++ +..++|+||++... +
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~v~q~~~~~~~l~~~~ 86 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYVPQKLYLDTTLPLTV 86 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEEeccccccccccChhH
Confidence 477899999 999999999999999999999999999998 9999875 13589999986311 0
Q ss_pred -HhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 142 -ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 142 -~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
.+... .... ....+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 87 ~~~~~~-~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 156 (251)
T PRK09544 87 NRFLRL-RPGT--KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156 (251)
T ss_pred HHHHhc-cccc--cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 00000 0000 123456788889988888888888 999999999999999 99999999 7778875543
No 276
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-25 Score=194.15 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=105.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC------CCcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p------~G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
.++.+++|+ ++|++++|+|+|||||||||++|+|+++| +|+|.++|.++... ....+++.++|+||++.
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 467889999 99999999999999999999999999998 38999999887421 22345667999999854
Q ss_pred -----HHHHhcCCC-Cc-chHHHHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 -----RAVETGGCP-HA-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 -----~~i~~g~~~-~~-~~~~~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.+.... .. ...+....+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+.|
T Consensus 101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~ 180 (261)
T PRK14258 101 PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180 (261)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 333322100 00 1112234556677777763 245777778 999999999999999 99999999 7777
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 181 LD~~~~ 186 (261)
T PRK14258 181 LDPIAS 186 (261)
T ss_pred CCHHHH
Confidence 776543
No 277
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.1e-25 Score=209.09 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=109.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH-HhhccEEecCchH--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e-~~~~ig~v~Q~~~-------- 138 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++....... +++.++|+||++.
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 468899999 999999999999999999999999999998 99999998886544332 3556999999852
Q ss_pred ---HH-----HHhcCCC-C-cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 ---RA-----VETGGCP-H-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ---~~-----i~~g~~~-~-~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
++ +...... . ....+....+.+.++.+++. ...++.+.+ |||||||++|||||+ +|+||||| ||.|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~g 421 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG 421 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 01 1110000 0 01112234567788888885 457889999 999999999999999 99999999 8889
Q ss_pred CCCCccCC
Q 027509 205 DKIPRKGG 212 (222)
Q Consensus 205 ~d~p~K~~ 212 (222)
+|...+.-
T Consensus 422 LD~~~~~~ 429 (491)
T PRK10982 422 IDVGAKFE 429 (491)
T ss_pred cChhHHHH
Confidence 98776543
No 278
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=2.7e-25 Score=209.30 Aligned_cols=141 Identities=18% Similarity=0.075 Sum_probs=107.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-C-CcEEEeeccCCCC-ChHHHhhccEEecCchHH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIR------ 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-~-G~I~i~g~di~~~-~~~e~~~~ig~v~Q~~~~------ 139 (222)
.++++++|+ .+|++++|+|||||||||||++|+|++++ + |+|.++|.++... .....+++++|++|++..
T Consensus 274 ~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 353 (490)
T PRK10938 274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVST 353 (490)
T ss_pred eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCC
Confidence 478899999 99999999999999999999999998876 4 9999999876322 223345689999997531
Q ss_pred ---HHH-hcCCC----Ccc-hHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 140 ---AVE-TGGCP----HAA-IREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 140 ---~i~-~g~~~----~~~-~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
++. .+... ... ..+....+.++++.+++.. ..++.+.+ |+|||||++|||||+ +|+||||| |++|+|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD 433 (490)
T PRK10938 354 SVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433 (490)
T ss_pred cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 111 11110 000 1222346778899999986 78888899 999999999999999 99999999 777888
Q ss_pred CCcc
Q 027509 207 IPRK 210 (222)
Q Consensus 207 ~p~K 210 (222)
...+
T Consensus 434 ~~~~ 437 (490)
T PRK10938 434 PLNR 437 (490)
T ss_pred HHHH
Confidence 6543
No 279
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=1.5e-25 Score=225.94 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=106.8
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|. ++|++++|+|||||||||++++|.+++.|+ |+|.++|.|+...+.+.+|.+||.|+|+|. +
T Consensus 366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~e 445 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRE 445 (1228)
T ss_pred chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHH
Confidence 4678899999 999999999999999999999999999998 999999999999999999999999999997 6
Q ss_pred HHHhcCCCCcchHHHHHH-----HHHHHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEec-CCCCC
Q 027509 140 AVETGGCPHAAIREDISI-----NLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDV-SGGDK 206 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~-----~~~~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~-t~G~d 206 (222)
|+.+|.. .++..+..+. +.+.+.. +....+..+.+ |||||||++|||||+ +|+|||||| |+++|
T Consensus 446 NI~~G~~-dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD 521 (1228)
T KOG0055|consen 446 NIRYGKP-DATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALD 521 (1228)
T ss_pred HHhcCCC-cccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccC
Confidence 7777643 3332221111 1112222 22344555544 999999999999999 999999995 45555
No 280
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-25 Score=210.66 Aligned_cols=137 Identities=20% Similarity=0.277 Sum_probs=108.3
Q ss_pred CCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
+|....+++..++|+ ++|+-+||+|+|||||||+||+|.+++..+|+|+++|+++...+...+|+-||||||+..
T Consensus 360 ~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd 439 (591)
T KOG0057|consen 360 SYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND 439 (591)
T ss_pred EeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccch
Confidence 455566689999999 999999999999999999999999999966999999999988888888899999999876
Q ss_pred ---HHHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecC
Q 027509 139 ---RAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVS 202 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t 202 (222)
.|+..| ++.+...+ +.++++.+++. ...+..+.| ||||||||+||||++ +|+|+++||+
T Consensus 440 TIl~NI~YG-n~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 440 TILYNIKYG-NPSASDEE----VVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred hHHHHhhcC-CCCcCHHH----HHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 455444 45444333 33333443332 233344444 999999999999999 9999999966
Q ss_pred CCC
Q 027509 203 GGD 205 (222)
Q Consensus 203 ~G~ 205 (222)
++.
T Consensus 515 TS~ 517 (591)
T KOG0057|consen 515 TSA 517 (591)
T ss_pred ccc
Confidence 653
No 281
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.7e-25 Score=199.98 Aligned_cols=140 Identities=17% Similarity=0.144 Sum_probs=105.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC-----CC-CcEEEeeccCCCC--ChHHHhhccEEecCchH-
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~-----p~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~- 138 (222)
..++++++|+ .+|+++||+|||||||||||++|+|++. |+ |+|.++|.++... ....+++.++|+||++.
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 3578999999 9999999999999999999999999986 45 9999999998532 22455678999999975
Q ss_pred ------HHHHhcCCCC-cchHHH-HHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ------RAVETGGCPH-AAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ------~~i~~g~~~~-~~~~~~-~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+|+.++.... ...++. .+.+.++++.+++. ...+..... |+|||||++|||||+ +|+||||| |+.
T Consensus 175 ~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts 254 (329)
T PRK14257 175 FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254 (329)
T ss_pred CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 4555432111 111111 12345566666652 345667777 999999999999999 99999999 677
Q ss_pred CCCCC
Q 027509 204 GDKIP 208 (222)
Q Consensus 204 G~d~p 208 (222)
++|..
T Consensus 255 ~LD~~ 259 (329)
T PRK14257 255 ALDPI 259 (329)
T ss_pred cCCHH
Confidence 77743
No 282
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.92 E-value=7.3e-25 Score=208.86 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=105.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|+||++. +
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 410 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAE 410 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHH
Confidence 4678999999 999999999999999999999999999998 999999999987777778889999999976 5
Q ss_pred HHHhcCCCCcchHHHHH-----HHHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 140 AVETGGCPHAAIREDIS-----INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~-----~~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
|+.++. +.....+..+ ...+.++.+ ++.......... |||||||++|||||+ +|+|+||| |++++|...
T Consensus 411 Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~ 489 (544)
T TIGR01842 411 NIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEG 489 (544)
T ss_pred HHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHH
Confidence 555432 2121111111 122344444 222233334455 999999999999999 99999999 556777543
No 283
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.1e-25 Score=207.82 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=111.3
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|.+..+.+.+++|+ ++|+.++|+|+||||||||+++|+|+++|+ |+|.+||.++...++...+++++||+|+|.
T Consensus 330 y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g 409 (559)
T COG4988 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG 409 (559)
T ss_pred cCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccc
Confidence 44444788999999 999999999999999999999999999998 999999999988888889999999999997
Q ss_pred ---HHHHhcCCCCcchHHHHHHHHH---HHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 139 ---RAVETGGCPHAAIREDISINLG---PLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~~~---~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
+|+.++... .+ .+.+..+.+ +.+.+.....+|..+.+ ||||+||+++||||+ +++||||| ||.++
T Consensus 410 TireNi~l~~~~-~s-~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~L 487 (559)
T COG4988 410 TIRENILLARPD-AS-DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHL 487 (559)
T ss_pred cHHHHhhccCCc-CC-HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCC
Confidence 677776432 22 222212111 22222223356666666 999999999999999 99999999 66677
Q ss_pred CC
Q 027509 206 KI 207 (222)
Q Consensus 206 d~ 207 (222)
|+
T Consensus 488 D~ 489 (559)
T COG4988 488 DA 489 (559)
T ss_pred CH
Confidence 75
No 284
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=2.3e-25 Score=193.61 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=92.5
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HHHHhc
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETG 144 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~i~~g 144 (222)
..++ .+|++++|+|||||||||||++|+|+++|+ |+|.+++. .++|++|++. +++...
T Consensus 18 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~~~tv~e~l~~~ 85 (246)
T cd03237 18 EGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADYEGTVRDLLSSI 85 (246)
T ss_pred ecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCCCCCHHHHHHHH
Confidence 3444 579999999999999999999999999998 99998873 4788888753 222211
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 145 ~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
..... .......++++.+++....++.+.+ |+||+||++|||||+ +|+||||| |+.++|...+
T Consensus 86 ~~~~~---~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~ 151 (246)
T cd03237 86 TKDFY---THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151 (246)
T ss_pred hhhcc---ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 00000 0112345678888888778888889 999999999999999 99999999 7777776543
No 285
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=5.2e-25 Score=208.41 Aligned_cols=140 Identities=21% Similarity=0.229 Sum_probs=111.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-----CcEEEeeccCCCCChHHHh----hccEEecCchH
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAVTNDIFTKEDGEFL----MRNGALPEERI 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-----G~I~i~g~di~~~~~~e~~----~~ig~v~Q~~~ 138 (222)
..++.++||+ .+||++||+|++||||||++++|+|++++. |+|.++|.++...+..+.+ +.|+||||++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 3578999999 999999999999999999999999999852 9999999988776665442 47999999987
Q ss_pred HHHH----hc------CCCC--cchHHHHHHHHHHHHhcCCccccc--CcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-c
Q 027509 139 RAVE----TG------GCPH--AAIREDISINLGPLEELSNLFKAD--LLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (222)
Q Consensus 139 ~~i~----~g------~~~~--~~~~~~~~~~~~~L~~l~l~~~~d--~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~ 201 (222)
..++ .+ ...+ ....+..+++.++|+.+++..... +++.+ ||||||||.||+||+ +|+++|+| |
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 2211 00 0001 123445578889999999987554 49999 999999999999999 99999999 6
Q ss_pred CCCCCCC
Q 027509 202 SGGDKIP 208 (222)
Q Consensus 202 t~G~d~p 208 (222)
|+.+|+.
T Consensus 182 TTaLDvt 188 (539)
T COG1123 182 TTALDVT 188 (539)
T ss_pred ccccCHH
Confidence 6677653
No 286
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.2e-25 Score=192.24 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=103.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-----C-CcEEEeeccCCC----CChHHHhhccEEecCchH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT----KEDGEFLMRNGALPEERI 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-----~-G~I~i~g~di~~----~~~~e~~~~ig~v~Q~~~ 138 (222)
.++++++|+ ++||+++|+|+|||||||||++|+|+++| + |+|.++|.++.. ....++++.++|+||++.
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 578999999 99999999999999999999999999874 5 999999876531 123455678999999854
Q ss_pred -------HHHHhcCC-CCcchHH-HHHHHHHHHHhcCCc----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cC
Q 027509 139 -------RAVETGGC-PHAAIRE-DISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 139 -------~~i~~g~~-~~~~~~~-~~~~~~~~L~~l~l~----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t 202 (222)
+++.++.. .....++ ..+.+.++++.+++. ...++.+.+ |+||+||++|||||+ +|+|+||| |+
T Consensus 110 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 189 (265)
T PRK14252 110 PFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPT 189 (265)
T ss_pred CCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34433211 0011111 123445566666542 345677788 999999999999999 99999999 77
Q ss_pred CCCCCCcc
Q 027509 203 GGDKIPRK 210 (222)
Q Consensus 203 ~G~d~p~K 210 (222)
.|+|...+
T Consensus 190 ~gLD~~~~ 197 (265)
T PRK14252 190 SALDPIAT 197 (265)
T ss_pred ccCCHHHH
Confidence 78876543
No 287
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=2.5e-25 Score=181.71 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=87.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH-HHhhccEEecCchHHHHHhcCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERIRAVETGGC 146 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~-e~~~~ig~v~Q~~~~~i~~g~~ 146 (222)
.++++++|+ ++||+++|+|||||||||||++|+|+++|+ |+|.+++.++...+.. .+++.++|+||
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q----------- 82 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ----------- 82 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe-----------
Confidence 478899999 999999999999999999999999999998 9999999988654443 34567999988
Q ss_pred CCcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
. |+||+||++|||||+ +|+++||| |+.++|...+
T Consensus 83 --------------------------L----S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~ 118 (163)
T cd03216 83 --------------------------L----SVGERQMVEIARALARNARLLILDEPTAALTPAEV 118 (163)
T ss_pred --------------------------c----CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHH
Confidence 3 999999999999999 99999999 6668886543
No 288
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.92 E-value=5.5e-25 Score=184.24 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=93.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc--CCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhc
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG 144 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll--~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g 144 (222)
.+++++++|+ ++|++++|+||||||||||+++|+|++ +|+ |+|.++|.++.. ...+++++|+||++.
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~------ 92 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDI------ 92 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---HhhhheEEEccCccc------
Confidence 4578999999 999999999999999999999999999 888 999999998753 245678999999853
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 145 ~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
..+...+.++..... .+. + |+||+||++|||||+ +|+++||| |+.|+|...
T Consensus 93 ~~~~~t~~~~i~~~~----~~~----------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 146 (194)
T cd03213 93 LHPTLTVRETLMFAA----KLR----------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146 (194)
T ss_pred CCCCCcHHHHHHHHH----Hhc----------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 122334444332111 110 5 999999999999999 99999999 777777543
No 289
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.92 E-value=9e-25 Score=199.77 Aligned_cols=166 Identities=20% Similarity=0.192 Sum_probs=126.1
Q ss_pred cCCCCccCCCCCCCC-----CCcccccCCCCCCCC----CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 39 GSDGRVYHSHDGLAP-----HSHEPIYSPGYFSRR----APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 39 ~~~~~~~~~~~~~~~-----~~h~~~~~~g~~~~~----~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
+|.|++.+.-..... .-.-.+.-.|+|-.+ ..++++++|+ .+|+++||+|++|||||||-++|.++++++
T Consensus 261 eP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 261 EPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred CCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 566777555543111 111113333444433 3456889999 999999999999999999999999999999
Q ss_pred CcEEEeeccCCCCChHHH---hhccEEecCchH----------HHHHhcCC---CCcchHHHHHHHHHHHHhcCCcc-cc
Q 027509 109 YSLAAVTNDIFTKEDGEF---LMRNGALPEERI----------RAVETGGC---PHAAIREDISINLGPLEELSNLF-KA 171 (222)
Q Consensus 109 G~I~i~g~di~~~~~~e~---~~~ig~v~Q~~~----------~~i~~g~~---~~~~~~~~~~~~~~~L~~l~l~~-~~ 171 (222)
|+|.|.|.++...+.++. |+++-.|||+|+ +.+.-|.. +..+..+..+++.++|+++++.. ..
T Consensus 341 G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r 420 (534)
T COG4172 341 GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR 420 (534)
T ss_pred ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh
Confidence 999999999987666554 678999999997 22222322 23344555678899999999975 58
Q ss_pred cCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 172 DLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 172 d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
++++.| |||||||++|||||+ +|++++||||++
T Consensus 421 ~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTS 455 (534)
T COG4172 421 NRYPHEFSGGQRQRIAIARALILKPELILLDEPTS 455 (534)
T ss_pred hcCCcccCcchhhHHHHHHHHhcCCcEEEecCCch
Confidence 999999 999999999999999 999999996665
No 290
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=7.1e-25 Score=210.19 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=103.8
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|++|++. +
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 407 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVAN 407 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHH
Confidence 4578999999 999999999999999999999999999998 999999999877777788889999999975 5
Q ss_pred HHHhcCCCCcchHHHHHHHHH------HHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 140 AVETGGCPHAAIREDISINLG------PLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~------~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
|+.++.. ... .+....+.+ .+..+ ++....+..... |||||||++|||||+ +|+|+||| |++++|..
T Consensus 408 Ni~~~~~-~~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~ 485 (569)
T PRK10789 408 NIALGRP-DAT-QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGR 485 (569)
T ss_pred HHhcCCC-CCC-HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHH
Confidence 6655432 222 111111111 11221 111122233344 999999999999999 99999999 66677754
Q ss_pred c
Q 027509 209 R 209 (222)
Q Consensus 209 ~ 209 (222)
.
T Consensus 486 ~ 486 (569)
T PRK10789 486 T 486 (569)
T ss_pred H
Confidence 4
No 291
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.92 E-value=9.6e-25 Score=208.58 Aligned_cols=137 Identities=21% Similarity=0.296 Sum_probs=105.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+.+++++|+ ++||.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|+||++. +
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~ 432 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVME 432 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHH
Confidence 4578899999 999999999999999999999999999998 999999999987777888889999999986 6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcC----CC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLL----CE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~----~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++. +... .+ .+.++++.+++. ...+..+ .. |||||||++|||||+ +|+++||| ||+++
T Consensus 433 Ni~~~~-~~~~-~~---~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~l 507 (576)
T TIGR02204 433 NIRYGR-PDAT-DE---EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSAL 507 (576)
T ss_pred HHhcCC-CCCC-HH---HHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCccccc
Confidence 776653 2222 11 122222322221 1222222 33 999999999999999 99999999 66667
Q ss_pred CCCcc
Q 027509 206 KIPRK 210 (222)
Q Consensus 206 d~p~K 210 (222)
|....
T Consensus 508 D~~~~ 512 (576)
T TIGR02204 508 DAESE 512 (576)
T ss_pred CHHHH
Confidence 75443
No 292
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.92 E-value=9.9e-25 Score=208.77 Aligned_cols=137 Identities=13% Similarity=0.052 Sum_probs=105.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++..+-.+-..
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~- 434 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP- 434 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhc-
Confidence 578999999 999999999999999999999999999998 99999999998777778888999999997632222111
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCc------CCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLL------LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~------~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+.......+.+.++++.+++....+.. ... |||||||++|||||+ +|+|+||| ++.++|.
T Consensus 435 n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~ 503 (555)
T TIGR01194 435 DEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDP 503 (555)
T ss_pred ccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 111111223455677777765432221 244 999999999999999 99999999 5555663
No 293
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.92 E-value=4.5e-25 Score=180.68 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=87.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCC
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~ 146 (222)
..++.+++|+ .+|++++|+||||||||||+++|+|+++|+ |+|.+++. ++++|++|++..
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~q~~~~------- 75 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFLPQRPYL------- 75 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEECCCCcc-------
Confidence 3477899999 999999999999999999999999999998 99998652 579999998631
Q ss_pred CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
....+.++.... .+.+ |+|||||++|||||+ +|+++||| |+.++|...+
T Consensus 76 ~~~tv~~nl~~~---------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~ 127 (166)
T cd03223 76 PLGTLREQLIYP---------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE 127 (166)
T ss_pred ccccHHHHhhcc---------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHH
Confidence 122333332110 3455 999999999999999 99999999 6667876544
No 294
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.92 E-value=1.3e-24 Score=209.24 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=106.0
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|.+...++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|+||++.
T Consensus 344 y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ 423 (585)
T TIGR01192 344 FANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR 423 (585)
T ss_pred CCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc
Confidence 43334578999999 999999999999999999999999999998 999999999877777778889999999976
Q ss_pred ---HHHHhcCCCCcchHHHHHHH-----HHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 139 ---RAVETGGCPHAAIREDISIN-----LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~-----~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
+|+.++. +.....+..... .+.+..+ ++.......... |||||||++|||||+ +|+|+||| |+.++
T Consensus 424 ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~L 502 (585)
T TIGR01192 424 SIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSAL 502 (585)
T ss_pred cHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 6666653 222211111111 1122222 222223334445 999999999999999 99999999 66667
Q ss_pred CCCc
Q 027509 206 KIPR 209 (222)
Q Consensus 206 d~p~ 209 (222)
|...
T Consensus 503 D~~~ 506 (585)
T TIGR01192 503 DVET 506 (585)
T ss_pred CHHH
Confidence 7543
No 295
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.92 E-value=1.2e-24 Score=182.94 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=91.5
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcC--cCCC-CcEEEeeccCCCCChHHH-hhccEEecCchHHHHHhc
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERIRAVETG 144 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gl--l~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~~~i~~g 144 (222)
.++++++|+ .+|++++|+|+||||||||+++|+|+ ++|+ |+|.++|.++...+.... +.+++|+||++..
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~----- 88 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPE----- 88 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhh-----
Confidence 478899999 99999999999999999999999999 4677 999999998866554443 3459999998642
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 145 ~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
.+.....+ .+ +....+ |+||+||++|||||+ +|+|+||| |+.++|...
T Consensus 89 -~~~~~~~~-------~l---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 139 (200)
T cd03217 89 -IPGVKNAD-------FL---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139 (200)
T ss_pred -ccCccHHH-------HH---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 12222211 11 122235 999999999999999 99999999 666887543
No 296
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=1e-24 Score=190.59 Aligned_cols=135 Identities=16% Similarity=0.094 Sum_probs=100.4
Q ss_pred CCcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEE-----------EeeccCCCCChHHHh--hccEEecC
Q 027509 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFL--MRNGALPE 135 (222)
Q Consensus 70 ~~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~-----------i~g~di~~~~~~e~~--~~ig~v~Q 135 (222)
.++.++++-.+|++++|+|||||||||||++|+|+++|+ |+|. ++|.++........+ ..++|++|
T Consensus 15 ~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 94 (255)
T cd03236 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQ 94 (255)
T ss_pred hhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecc
Confidence 466677755899999999999999999999999999998 9996 667766432111111 24678877
Q ss_pred chHH-------HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 136 ERIR-------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 136 ~~~~-------~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
.... ++... ....+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+++||| |+.++
T Consensus 95 ~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~L 170 (255)
T cd03236 95 YVDLIPKAVKGKVGEL----LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYL 170 (255)
T ss_pred hhccCchHHHHHHHHH----hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 6431 11111 11112235567789999988778888888 999999999999999 99999999 77777
Q ss_pred CCC
Q 027509 206 KIP 208 (222)
Q Consensus 206 d~p 208 (222)
|..
T Consensus 171 D~~ 173 (255)
T cd03236 171 DIK 173 (255)
T ss_pred CHH
Confidence 754
No 297
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.92 E-value=6.4e-25 Score=197.82 Aligned_cols=123 Identities=21% Similarity=0.141 Sum_probs=97.1
Q ss_pred EEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HHHHhcCCC-CcchHHHH
Q 027509 86 IGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCP-HAAIREDI 155 (222)
Q Consensus 86 IiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~i~~g~~~-~~~~~~~~ 155 (222)
|+|||||||||||++|+|+++|+ |+|.++|.++..... .+++++|+||++. +|+.++... .....+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999998 999999998854332 3567999999864 444443211 11112223
Q ss_pred HHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 156 ~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
..+.++++.+++....++.+.+ |+|||||++|||||+ +|+|+||| |+.|+|...+
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~ 136 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR 136 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHH
Confidence 4667789999998888999999 999999999999999 99999999 7778886544
No 298
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.91 E-value=2.3e-24 Score=210.89 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=104.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||||++. +
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~e 549 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD 549 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHH
Confidence 4578999999 999999999999999999999999999998 999999999988888888999999999976 6
Q ss_pred HHHhcCCCCcchHHHHHH-----HHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 140 AVETGGCPHAAIREDISI-----NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~-----~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
|+.++. +.....+..+. ..+.++.+ ++.......... |||||||++|||||+ +|+|+||| +|+++|..
T Consensus 550 Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~ 627 (694)
T TIGR01846 550 NIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE 627 (694)
T ss_pred HHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence 666543 22221111111 11223333 122222222334 999999999999999 99999999 66666643
No 299
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=7.6e-25 Score=232.23 Aligned_cols=141 Identities=16% Similarity=0.094 Sum_probs=113.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|. ++||++||+||||||||||+|+|+|+++|+ |+|.++|.++.. +..+.++.|||+||+..
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEEEeccccCCCCCCHH
Confidence 4688999999 999999999999999999999999999998 999999998853 33455678999999854
Q ss_pred HHHHhcCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.+... ......+..+.+.++|+.+++....++.+.+ |||||||++||+||+ +|+|+||| |++|+|...|
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr 2106 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 34433211 1111122234566789999998888999999 999999999999999 99999999 7788886544
No 300
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.91 E-value=1.3e-24 Score=226.89 Aligned_cols=133 Identities=20% Similarity=0.190 Sum_probs=106.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC----------------------------------------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD---------------------------------------- 107 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p---------------------------------------- 107 (222)
.+++++++|+ ++|++++|+||+|||||||+++|+|++.|
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 4688999999 99999999999999999999999999998
Q ss_pred --------------C-CcEEEeeccCCCCChHHHhhccEEecCchH-------HHHHhcCCCCcchHHHHHHHHHHHHhc
Q 027509 108 --------------K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHAAIREDISINLGPLEEL 165 (222)
Q Consensus 108 --------------~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~i~~g~~~~~~~~~~~~~~~~~L~~l 165 (222)
+ |+|.++|.++...+...+|+.|+||+|++. +|+.+|. +.... +. +.++++..
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~-~~at~-ee---I~~A~k~A 1335 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK-EDATR-ED---VKRACKFA 1335 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC-CCCCH-HH---HHHHHHHc
Confidence 5 999999999988888899999999999986 7887763 22221 22 22222222
Q ss_pred C-------CcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecCC-CCC
Q 027509 166 S-------NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVSG-GDK 206 (222)
Q Consensus 166 ~-------l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t~-G~d 206 (222)
+ +...+|..+.+ |||||||++|||||+ +|+||||||++ .+|
T Consensus 1336 ~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred CCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 2 23345666554 999999999999999 99999999555 455
No 301
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.8e-24 Score=180.69 Aligned_cols=118 Identities=17% Similarity=0.152 Sum_probs=91.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC--CC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhc
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG 144 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~--p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g 144 (222)
..++++++|+ ++|++++|+|||||||||||++|+|++. |+ |+|.+++.++. ..+++.++|++|++..
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~~~q~~~~----- 90 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVH----- 90 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEEecccCcc-----
Confidence 3478899999 9999999999999999999999999863 66 99999998874 3456689999997531
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 145 ~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
.+...++++..... .+. + |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 91 -~~~~tv~~~l~~~~-~~~-------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~ 144 (192)
T cd03232 91 -SPNLTVREALRFSA-LLR-------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144 (192)
T ss_pred -ccCCcHHHHHHHHH-HHh-------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHH
Confidence 22234444432211 010 5 999999999999999 99999999 7777876544
No 302
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=1.6e-24 Score=229.79 Aligned_cols=141 Identities=18% Similarity=0.105 Sum_probs=114.4
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
+..++++++|+ .+||+++|+|||||||||||++|+|+++|+ |+|.++|.++.. +..++++.+||+||+..
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTV 1020 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEEEecCCcCCCCCCH
Confidence 34578999999 999999999999999999999999999998 999999999853 34556778999999864
Q ss_pred -HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 -~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.+..... ....+..+.+.++|+.+++....++.+.+ |||||||++|||||+ +|+|+||| |++|+|...
T Consensus 1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~s 1096 (2272)
T TIGR01257 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS 1096 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence 4444421111 11122335677899999998888999999 999999999999999 99999999 677887543
No 303
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.6e-24 Score=189.65 Aligned_cols=110 Identities=20% Similarity=0.149 Sum_probs=94.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
.+++++||+ ++||++||+|+||||||||-|+|+|+++|+ |+|++.|.++...+
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~------------------------- 81 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------------------- 81 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------------------------
Confidence 577899999 999999999999999999999999999999 99999999875322
Q ss_pred CcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC-CCC
Q 027509 148 HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG-DKI 207 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G-~d~ 207 (222)
..+..+++.+.|+.+++.. .+++++.+ ||||+||+.|||||+ +|+++|+||+.. +|+
T Consensus 82 ---~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 82 ---KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred ---hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 1223456888999999764 78999999 999999999999999 999999996554 444
No 304
>PLN03211 ABC transporter G-25; Provisional
Probab=99.91 E-value=2.9e-24 Score=209.70 Aligned_cols=138 Identities=18% Similarity=0.232 Sum_probs=107.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC---CCcEEEeeccCCCCChHHHhhccEEecCchH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p---~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------ 138 (222)
..++++++++ ++||+++|+|||||||||||++|+|+++| +|+|.++|.++. .+.+++++||+|++.
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 4578899999 99999999999999999999999999987 399999998873 234567999999865
Q ss_pred --HHHHhcCC---CC-cchHHHHHHHHHHHHhcCCccccc-----CcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 --RAVETGGC---PH-AAIREDISINLGPLEELSNLFKAD-----LLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 --~~i~~g~~---~~-~~~~~~~~~~~~~L~~l~l~~~~d-----~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+++.+... +. ....+..+++.++++.+++....+ ..+.. |||||||++|||+|+ +|+|+||| |++|
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 44444321 11 112233356778899999876543 44566 999999999999999 99999999 7888
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 237 LD~~~~ 242 (659)
T PLN03211 237 LDATAA 242 (659)
T ss_pred cCHHHH
Confidence 885443
No 305
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.91 E-value=3.6e-24 Score=208.59 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=113.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH----hhccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~----~~~ig~v~Q~~~----- 138 (222)
..+.+++|+ ++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++ ++.++|+||++.
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 468899999 999999999999999999999999999998 999999999876555443 457999999875
Q ss_pred ---HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+|+.+.... .....+..+.+.++++.+++....++.+.+ |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 333322110 111123345677889999998888999999 999999999999999 99999999 7777775443
No 306
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=4.2e-24 Score=187.55 Aligned_cols=136 Identities=14% Similarity=0.009 Sum_probs=97.4
Q ss_pred CCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCch-HHHHHh
Q 027509 67 RRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVET 143 (222)
Q Consensus 67 ~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~-~~~i~~ 143 (222)
...+++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.+++..... ....++.++.. .+++.+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~------~~~~~~~~~~tv~enl~~ 108 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVI------AISAGLSGQLTGIENIEF 108 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEE------ecccCCCCCCcHHHHHHH
Confidence 344578899999 999999999999999999999999999998 999998852100 01112222211 244433
Q ss_pred cCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 144 GGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 144 g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+.. ......+....+..+++.+++....++.+.+ |+||+||++|||||+ +|+||||| |+.|+|..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 109 KMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 211 1111222233455677777887778888889 999999999999999 99999999 56688854
No 307
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=3.3e-24 Score=179.31 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=109.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHH----HHh
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA----VET 143 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~----i~~ 143 (222)
.++..++|+ ++|++++|+|.||||||||.|+|+|+++|+ |+|.+|+..+...+..-+.+.|-++||+|+.. +..
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 466789999 999999999999999999999999999999 99999999886655555556799999998721 112
Q ss_pred cCC---C-----CcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEec-CCCCCCC
Q 027509 144 GGC---P-----HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIIDV-SGGDKIP 208 (222)
Q Consensus 144 g~~---~-----~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~-t~G~d~p 208 (222)
|.. | ........+++.+.|..+++.. ..+.++.. |.||||||++||||+ +|+|+|.|+ -+++|..
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~s 183 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS 183 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHH
Confidence 211 1 1122233466777888998864 57788888 999999999999999 999999994 5566643
No 308
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=4.5e-24 Score=204.39 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=99.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.+++. ..++||||++.
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEecCCCCCCCCcHH
Confidence 4578999999 999999999999999999999999999998 99998631 36899999863
Q ss_pred HHHHhcCCCC--------------c-c---h-------------------HHHHHHHHHHHHhcCCcccccCcCCC-ChH
Q 027509 139 RAVETGGCPH--------------A-A---I-------------------REDISINLGPLEELSNLFKADLLLCE-SGG 180 (222)
Q Consensus 139 ~~i~~g~~~~--------------~-~---~-------------------~~~~~~~~~~L~~l~l~~~~d~~~~e-SgG 180 (222)
+++.++.... . . + .+...++.++++.+++.. .++.+.+ |||
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgG 167 (556)
T PRK11819 89 ENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGG 167 (556)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHH
Confidence 3333321100 0 0 0 001234556778888753 6888888 999
Q ss_pred HHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 181 DNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 181 qkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
|||||+|||||+ +|+|+||| |++++|...+
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~ 199 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESV 199 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHH
Confidence 999999999999 99999999 6667775543
No 309
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=5.6e-24 Score=214.58 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=110.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+||+||||||++.+|-+++.|+ |.|.++|.|+...+...+|++|+.|.|+|. +
T Consensus 1003 ~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrE 1082 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRE 1082 (1228)
T ss_pred chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHH
Confidence 4677999999 999999999999999999999999999998 999999999999999999999999999997 7
Q ss_pred HHHhcCCCCcchHHHHHH-----HHHHHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecCCCC
Q 027509 140 AVETGGCPHAAIREDISI-----NLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~-----~~~~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t~G~ 205 (222)
|+.+|... ....|..+. +.+.+. .+....|..+.+ |||||||++|||||+ +|+||||||.++-
T Consensus 1083 NI~YG~~~-vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1083 NIAYGSEE-VSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred HHhccCCC-CCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence 88888322 322222111 112222 344567787775 999999999999999 9999999977653
No 310
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.90 E-value=7e-24 Score=197.98 Aligned_cols=134 Identities=21% Similarity=0.219 Sum_probs=105.9
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
..+.+++++|. .+|+.+|||||+|||||||.|+|.|.++|. |.|.++|.++.+++..++-+.|||+||+..
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIa 427 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIA 427 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHH
Confidence 45788999999 999999999999999999999999999998 999999999999999999999999999864
Q ss_pred HHHHhcCCCCcchHHHH-----HHHHHHHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 139 RAVETGGCPHAAIREDI-----SINLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~-----~~~~~~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
+|+.-... .....+.. +.+.+.+-. +....|..+.+ |||||||+++||||. +|.++|||||+.
T Consensus 428 eNIaRf~~-~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNs 501 (580)
T COG4618 428 ENIARFGE-EADPEKVIEAARLAGVHELILR--LPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501 (580)
T ss_pred HHHHhccc-cCCHHHHHHHHHHcChHHHHHh--CcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 44432111 11111111 112333333 34567777766 999999999999999 999999997764
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.7e-24 Score=201.03 Aligned_cols=127 Identities=18% Similarity=0.139 Sum_probs=100.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.+++. ++++|+||++.
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t 400 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLT 400 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccCCCCCc
Confidence 3477889999 999999999999999999999999999998 99998762 46899999753
Q ss_pred --HHHHhcCCCCcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 --RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 --~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.... . .......+.++|+.+++. ...++.+.+ |||||||++|||||+ +|+||||| |++++|...+
T Consensus 401 ~~~~~~~~~--~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 474 (530)
T PRK15064 401 LFDWMSQWR--Q--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESI 474 (530)
T ss_pred HHHHHHHhc--c--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 1111100 0 001123566788999884 567888999 999999999999999 99999999 7777776544
No 312
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5e-24 Score=202.70 Aligned_cols=131 Identities=19% Similarity=0.151 Sum_probs=99.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.+++. ..++|+||++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~tv~ 82 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKLRQDQFAFEEFTVL 82 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEeccCCcCCCCcHH
Confidence 3578899999 999999999999999999999999999998 99998762 25889998753
Q ss_pred HHHHhcCC---------------CCc------ch------------HHHHHHHHHHHHhcCCccc-ccCcCCC-ChHHHH
Q 027509 139 RAVETGGC---------------PHA------AI------------REDISINLGPLEELSNLFK-ADLLLCE-SGGDNL 183 (222)
Q Consensus 139 ~~i~~g~~---------------~~~------~~------------~~~~~~~~~~L~~l~l~~~-~d~~~~e-SgGqkQ 183 (222)
+++.++.. +.. .+ .+...++.++|+.+++... .++.+.+ |+||||
T Consensus 83 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~q 162 (530)
T PRK15064 83 DTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKL 162 (530)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHH
Confidence 22222110 000 00 0112356678889988653 3567788 999999
Q ss_pred HHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 184 AANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 184 rv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
||+|||||+ +|+||||| |++++|...+
T Consensus 163 rv~lA~aL~~~p~lLlLDEPt~~LD~~~~ 191 (530)
T PRK15064 163 RVLLAQALFSNPDILLLDEPTNNLDINTI 191 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHH
Confidence 999999999 99999999 7777775543
No 313
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.90 E-value=1e-23 Score=204.29 Aligned_cols=139 Identities=19% Similarity=0.108 Sum_probs=111.5
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC----CCcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p----~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
+..+++++++. ++||+++|+|||||||||||++|+|..++ +|+|.++|.++. ...+++.++|++|++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 34578999999 99999999999999999999999999876 389999998874 3456778999999875
Q ss_pred ----HHHHhcCC---CC-cchHHHHHHHHHHHHhcCCcccccCcCC------C-ChHHHHHHHHHHHHc-CCCeEEEe-c
Q 027509 139 ----RAVETGGC---PH-AAIREDISINLGPLEELSNLFKADLLLC------E-SGGDNLAANFSRELA-DYIIYIID-V 201 (222)
Q Consensus 139 ----~~i~~g~~---~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~------e-SgGqkQrv~iArAL~-~p~IlILD-~ 201 (222)
+++.++.. +. ....+....+.+.++.+++....|..+. . |||||||++|||+|+ +|+|++|| |
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 55555422 11 1223334567889999998877777765 5 999999999999999 99999999 7
Q ss_pred CCCCCCCc
Q 027509 202 SGGDKIPR 209 (222)
Q Consensus 202 t~G~d~p~ 209 (222)
++|+|...
T Consensus 194 tsgLD~~~ 201 (617)
T TIGR00955 194 TSGLDSFM 201 (617)
T ss_pred CcchhHHH
Confidence 77887543
No 314
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1e-23 Score=173.47 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=108.6
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC--CCC-C---hHHHhhccEEecCchH-
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI--FTK-E---DGEFLMRNGALPEERI- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di--~~~-~---~~e~~~~ig~v~Q~~~- 138 (222)
....+.+++|+ +.|+++.|+||+|||||||+|.|+-+.-|. |+..+.++.. +.. . ..++|+++|+|||...
T Consensus 14 ~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~l 93 (242)
T COG4161 14 AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL 93 (242)
T ss_pred cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhcc
Confidence 34466789999 999999999999999999999999998887 9888876643 221 1 2345788999999754
Q ss_pred -------HHHHhcCCC--CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCC
Q 027509 139 -------RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKI 207 (222)
Q Consensus 139 -------~~i~~g~~~--~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~ 207 (222)
+|+.-..+. .....+...++.++|+++.+....|+++-. ||||+|||+|||||+ +|.|+++|||+---+
T Consensus 94 wphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaald 173 (242)
T COG4161 94 WPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred CchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccC
Confidence 232211111 111233446788899999999999999999 999999999999999 999999997776554
Q ss_pred C
Q 027509 208 P 208 (222)
Q Consensus 208 p 208 (222)
|
T Consensus 174 p 174 (242)
T COG4161 174 P 174 (242)
T ss_pred H
Confidence 4
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=8.8e-24 Score=202.35 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=99.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCch-H--------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-I-------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~-~-------- 138 (222)
.++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.+++ + .+++|+||++ .
T Consensus 338 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~ 406 (556)
T PRK11819 338 LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVW 406 (556)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEEEeCchhhcCCCCCHH
Confidence 478899999 999999999999999999999999999998 9998832 2 1589999985 2
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ...........+++.+++.. ..++.+.+ |||||||++|||||+ +|+||||| |+.|+|...+
T Consensus 407 e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 481 (556)
T PRK11819 407 EEISGGLDII-KVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETL 481 (556)
T ss_pred HHHHhhcccc-cccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 3333321110 00001122346788898864 46888899 999999999999999 99999999 6668886654
No 316
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=1e-23 Score=201.71 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=99.8
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.+++ ++ .|+|+||++.
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv 403 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTV 403 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEEEEeCCccccCCCCcH
Confidence 3578899999 999999999999999999999999999998 9998833 21 5899999752
Q ss_pred -HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 -RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 -~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.... ..........++++.+++.. ..++.+.+ ||||||||+|||||+ +|+||||| |+.|+|...+
T Consensus 404 ~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 479 (552)
T TIGR03719 404 WEEISGGLDII-QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETL 479 (552)
T ss_pred HHHHHhhcccc-ccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 3333322111 01111123446788888864 46888889 999999999999999 99999999 7778886554
No 317
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=1.5e-23 Score=200.56 Aligned_cols=130 Identities=16% Similarity=0.119 Sum_probs=97.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.+++ ...|+||||++.
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~v~Q~~~~~~~~tv~ 86 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGYLPQEPQLDPTKTVR 86 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEEEeccCCCCCCCcHH
Confidence 3578899999 999999999999999999999999999998 9998864 136899999864
Q ss_pred HHHHhcCCCC---------------cchHH----------------------HHHHHHHHHHhcCCcccccCcCCC-ChH
Q 027509 139 RAVETGGCPH---------------AAIRE----------------------DISINLGPLEELSNLFKADLLLCE-SGG 180 (222)
Q Consensus 139 ~~i~~g~~~~---------------~~~~~----------------------~~~~~~~~L~~l~l~~~~d~~~~e-SgG 180 (222)
+++.++.... ....+ ...++.++++.+++.. .++.+.+ |||
T Consensus 87 e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgG 165 (552)
T TIGR03719 87 ENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGG 165 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHH
Confidence 3443321100 00000 0123445667777643 5778888 999
Q ss_pred HHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 181 DNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 181 qkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
||||++|||||+ +|+||||| |++++|...+
T Consensus 166 qkqrv~la~al~~~p~lLLLDEPt~~LD~~~~ 197 (552)
T TIGR03719 166 ERRRVALCRLLLSKPDMLLLDEPTNHLDAESV 197 (552)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCChHHH
Confidence 999999999999 99999999 5667775443
No 318
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.90 E-value=1.2e-23 Score=219.70 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=104.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEe-eccCCCCChHHHhhccEEecCchH-------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~-g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++ +.++...+...+++.|+||+|++. +
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e 478 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence 578999999 999999999999999999999999999998 999995 678876667777889999999975 6
Q ss_pred HHHhcCCCCc-----------------------------------------chH-----------HHHHHHHHHHHhcCC
Q 027509 140 AVETGGCPHA-----------------------------------------AIR-----------EDISINLGPLEELSN 167 (222)
Q Consensus 140 ~i~~g~~~~~-----------------------------------------~~~-----------~~~~~~~~~L~~l~l 167 (222)
|+.++..... ... ...+.+.++++.+++
T Consensus 479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l 558 (1466)
T PTZ00265 479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI 558 (1466)
T ss_pred HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence 6766532100 000 001234445555544
Q ss_pred ccc-------c----cCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 168 LFK-------A----DLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 168 ~~~-------~----d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
... + ...... |||||||++|||||+ +|+||||| +|+++|.
T Consensus 559 ~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~ 612 (1466)
T PTZ00265 559 HDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN 612 (1466)
T ss_pred HHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 322 2 234455 999999999999999 99999999 5556664
No 319
>PLN03130 ABC transporter C family member; Provisional
Probab=99.90 E-value=1.5e-23 Score=220.72 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=104.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++||.+||+|++|||||||+++|+|+++|+ |+|.++|.++...+..++|++|++|||++. +
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHH
Confidence 4678999999 999999999999999999999999999998 999999999998888999999999999986 5
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecCC-CC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVSG-GD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t~-G~ 205 (222)
|+..+. .. . . +.+.++++..++. ..+|..+.+ |+|||||++|||||+ +|+|+||||++ .+
T Consensus 1332 NLd~~~-~~-t-d---eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaL 1405 (1622)
T PLN03130 1332 NLDPFN-EH-N-D---ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAV 1405 (1622)
T ss_pred HhCcCC-CC-C-H---HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 554432 11 1 1 1233333333332 234554543 999999999999999 99999999555 44
Q ss_pred C
Q 027509 206 K 206 (222)
Q Consensus 206 d 206 (222)
|
T Consensus 1406 D 1406 (1622)
T PLN03130 1406 D 1406 (1622)
T ss_pred C
Confidence 4
No 320
>PLN03232 ABC transporter C family member; Provisional
Probab=99.90 E-value=1.4e-23 Score=219.99 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=104.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++||.+||+|++|||||||+++|+|+++|+ |+|.++|.|+...+..++|++|++|||++. +
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHH
Confidence 4678999999 999999999999999999999999999998 999999999988888889999999999986 5
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcCC----C-ChHHHHHHHHHHHHc-CCCeEEEecCC-CC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLC----E-SGGDNLAANFSRELA-DYIIYIIDVSG-GD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~~----e-SgGqkQrv~iArAL~-~p~IlILD~t~-G~ 205 (222)
|+..+. . .. . +.+.++++..++. ..+|..+. . |||||||++|||||+ +|+|+||||++ .+
T Consensus 1329 NL~~~~-~-~s-d---eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaL 1402 (1495)
T PLN03232 1329 NIDPFS-E-HN-D---ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASV 1402 (1495)
T ss_pred HcCCCC-C-CC-H---HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 554432 1 11 1 1233344443332 23444443 3 999999999999999 99999999655 44
Q ss_pred C
Q 027509 206 K 206 (222)
Q Consensus 206 d 206 (222)
|
T Consensus 1403 D 1403 (1495)
T PLN03232 1403 D 1403 (1495)
T ss_pred C
Confidence 4
No 321
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.90 E-value=8.7e-24 Score=179.64 Aligned_cols=130 Identities=15% Similarity=-0.021 Sum_probs=89.9
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEE-EeeccCCCCChHHHhhccEEecC-chHHHHHhcCC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-AVTNDIFTKEDGEFLMRNGALPE-ERIRAVETGGC 146 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~-i~g~di~~~~~~e~~~~ig~v~Q-~~~~~i~~g~~ 146 (222)
++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|. +++..+.. .....+.+. ...+++.+...
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~------~~~~~l~~~ltv~enl~~~~~ 75 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPL------GANSFILPGLTGEENARMMAS 75 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceecc------ccccccCCcCcHHHHHHHHHH
Confidence 56789999 999999999999999999999999999998 9997 66654311 011122222 12255544211
Q ss_pred -CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEec-CCCCCCCc
Q 027509 147 -PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDV-SGGDKIPR 209 (222)
Q Consensus 147 -~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~-t~G~d~p~ 209 (222)
......+. ...+++.+++....++.+.+ |+|||||++|||||+ +|+++|||| +++.|...
T Consensus 76 ~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 76 LYGLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred HcCCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 11111111 11223445555667788888 999999999999999 999999996 57777544
No 322
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=4.9e-24 Score=186.73 Aligned_cols=141 Identities=17% Similarity=0.119 Sum_probs=109.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------- 138 (222)
+++++++|+ ++|+++|++|||||||||+||+|+|++.|+ |.|.++|.+.+. +..++.+.+++|+-...
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 477899999 999999999999999999999999999998 999999998864 45667778888754332
Q ss_pred HHHHh-cCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 139 RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 139 ~~i~~-g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
+-+.. .........+..++.....+.|+++..++..+.. |-|||+|+.||.||+ +|+|++|| ||-|+|+-.|.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~ 193 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQA 193 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHH
Confidence 00000 0000011122334555567788888888898989 999999999999999 99999999 77799976654
No 323
>PRK13409 putative ATPase RIL; Provisional
Probab=99.90 E-value=1.2e-23 Score=203.00 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=98.7
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HHH
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~i 141 (222)
+..++|+ .+||+++|+|||||||||||++|+|+++|+ |+|.++ + +++|+||++. +++
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eEEEecccccCCCCCcHHHHH
Confidence 6778899 999999999999999999999999999998 999875 1 4899999753 233
Q ss_pred HhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
.++.... . ....+.++|+.+++....++.+.+ ||||||||+|||||+ +|+||||| ||.|+|...+.
T Consensus 422 ~~~~~~~-~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~ 490 (590)
T PRK13409 422 RSITDDL-G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRL 490 (590)
T ss_pred HHHhhhc-C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 2221100 0 112356788999998888999999 999999999999999 99999999 77888866543
No 324
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.8e-23 Score=176.62 Aligned_cols=138 Identities=17% Similarity=0.076 Sum_probs=112.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc--CCC-CcEEEeeccCCCCChHHHh-hccEEecCchHH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIR---- 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll--~p~-G~I~i~g~di~~~~~~e~~-~~ig~v~Q~~~~---- 139 (222)
..++..+|++ ++||+.+|+||||||||||.++|+|.- +.+ |+|.++|.+|...++.|+. ..|...||.|.+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 3588899999 999999999999999999999999965 557 9999999999998887764 469999999972
Q ss_pred ----HHHhcCC-----CCcchHHHHHHHHHHHHhcCCcc-cccCcCCC--ChHHHHHHHHHHHHc-CCCeEEEec-CCCC
Q 027509 140 ----AVETGGC-----PHAAIREDISINLGPLEELSNLF-KADLLLCE--SGGDNLAANFSRELA-DYIIYIIDV-SGGD 205 (222)
Q Consensus 140 ----~i~~g~~-----~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e--SgGqkQrv~iArAL~-~p~IlILD~-t~G~ 205 (222)
++..... ... ..+....+.+.++.+++.. .+++.+.+ |||||+|..|+..++ +|++.|||| -+|+
T Consensus 97 ~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGL 175 (251)
T COG0396 97 TNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175 (251)
T ss_pred eHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCc
Confidence 2211100 001 2345567778899998876 78999999 999999999999999 999999995 5677
Q ss_pred CC
Q 027509 206 KI 207 (222)
Q Consensus 206 d~ 207 (222)
|+
T Consensus 176 DI 177 (251)
T COG0396 176 DI 177 (251)
T ss_pred cH
Confidence 74
No 325
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=2.9e-23 Score=183.98 Aligned_cols=128 Identities=17% Similarity=0.167 Sum_probs=88.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
..++++++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.+++ .++|++|++. +
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~e 116 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKE 116 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EEEEEeCcccccccCHHH
Confidence 3478899999 999999999999999999999999999998 9999876 3788888764 3
Q ss_pred HHHhcCCCCcch--HHHHHH--HHHHHHhcCCcc--cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAI--REDISI--NLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~--~~~~~~--~~~~L~~l~l~~--~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++.. .... .+.... ..+.+..+.... ..+..+.+ |+||+||++|||||+ +|+||||| |+.|+|...+
T Consensus 117 nl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~ 195 (282)
T cd03291 117 NIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 195 (282)
T ss_pred Hhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 3333211 1000 000000 011222221110 22334456 999999999999999 99999999 6668875443
No 326
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.3e-23 Score=194.49 Aligned_cols=136 Identities=19% Similarity=0.219 Sum_probs=107.7
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
..+++++.+|+ ++||-++|+|++|||||||+++|+|.+.|+ |+|.++|.++...+++.++..|++++|.+.
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr 429 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLR 429 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHH
Confidence 34688999999 999999999999999999999999999998 999999999988888888889999999765
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc-------cccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLF-------KADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-------~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+|+.+. .+.++..+ ..++++++++.+ .++..+.| ||||+||++|||+|+ +.+++||| ||+|
T Consensus 430 ~NL~lA-~~~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTeg 504 (573)
T COG4987 430 DNLRLA-NPDASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEG 504 (573)
T ss_pred HHHhhc-CCCCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCccc
Confidence 455444 33333222 223444444332 33344444 999999999999999 99999999 7888
Q ss_pred CCCC
Q 027509 205 DKIP 208 (222)
Q Consensus 205 ~d~p 208 (222)
+|.-
T Consensus 505 LD~~ 508 (573)
T COG4987 505 LDPI 508 (573)
T ss_pred CChh
Confidence 8853
No 327
>PTZ00243 ABC transporter; Provisional
Probab=99.89 E-value=2.5e-23 Score=218.46 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=104.9
Q ss_pred CCCC-CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---
Q 027509 65 FSRR-APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--- 138 (222)
Q Consensus 65 ~~~~-~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--- 138 (222)
|... .+++++++|+ ++||.+||+|++|||||||+++|+|+++|+ |+|.++|.|+...+..++|+.|+||||++.
T Consensus 1318 Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1318 YREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred eCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 4433 3478999999 999999999999999999999999999998 999999999988888899999999999986
Q ss_pred ----HHHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcCCC-----ChHHHHHHHHHHHHc-C-CCeEEEe
Q 027509 139 ----RAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCE-----SGGDNLAANFSRELA-D-YIIYIID 200 (222)
Q Consensus 139 ----~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~~e-----SgGqkQrv~iArAL~-~-p~IlILD 200 (222)
+|+.... ... .+.+.++++..++. ..+|..+.+ |+|||||++|||||+ + |+|||||
T Consensus 1398 gTIreNIdp~~--~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLD 1471 (1560)
T PTZ00243 1398 GTVRQNVDPFL--EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMD 1471 (1560)
T ss_pred ccHHHHhCccc--CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4553221 111 12344445544443 234544433 999999999999999 6 8999999
Q ss_pred cCCC
Q 027509 201 VSGG 204 (222)
Q Consensus 201 ~t~G 204 (222)
|++.
T Consensus 1472 EATS 1475 (1560)
T PTZ00243 1472 EATA 1475 (1560)
T ss_pred CCCc
Confidence 6554
No 328
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=8.5e-24 Score=204.16 Aligned_cols=143 Identities=17% Similarity=0.080 Sum_probs=102.0
Q ss_pred CCCCCCCcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEE-----------EeeccCCCCChHHH---hhc
Q 027509 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEF---LMR 129 (222)
Q Consensus 65 ~~~~~~~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~-----------i~g~di~~~~~~e~---~~~ 129 (222)
|..+...+.+++.-++|+++||+|||||||||||++|+|+++|+ |+|. ++|.++.... .++ ..+
T Consensus 83 yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~-~~~~~~~~~ 161 (590)
T PRK13409 83 YGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF-KKLYNGEIK 161 (590)
T ss_pred ecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHH-HHHhccCcc
Confidence 44333467778823899999999999999999999999999998 9997 7887764211 111 123
Q ss_pred cEEecCchHHHHHh--cC-CCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 130 NGALPEERIRAVET--GG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 130 ig~v~Q~~~~~i~~--g~-~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.+|.......+ +. .......+....+.++++.+++....++.+.+ ||||+||++||+||+ +|+||||| |++
T Consensus 162 ~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts 241 (590)
T PRK13409 162 VVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTS 241 (590)
T ss_pred eeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 56666643311111 00 00001112234567789999998888999999 999999999999999 99999999 677
Q ss_pred CCCCC
Q 027509 204 GDKIP 208 (222)
Q Consensus 204 G~d~p 208 (222)
++|..
T Consensus 242 ~LD~~ 246 (590)
T PRK13409 242 YLDIR 246 (590)
T ss_pred CCCHH
Confidence 77755
No 329
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-23 Score=174.89 Aligned_cols=137 Identities=17% Similarity=0.131 Sum_probs=103.5
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCch--------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-------- 137 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~-------- 137 (222)
.+.++.+++|+ .+||++.|.||||||||||||+|+|+++|+ |+|.+++..+... ...+.+.+-|+--.+
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~-~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc-hhhHHHHHHHhhccccccchhhH
Confidence 34677899999 999999999999999999999999999999 9999999887542 222333333332111
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 138 ~~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
.||+.|...-+-. .....+.++++.+++....|..+.. |-|||+||+|||-++ .++++||| |++.+|+
T Consensus 93 ~ENL~F~~~~~~~--~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk 163 (209)
T COG4133 93 LENLHFWQRFHGS--GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK 163 (209)
T ss_pred HHHHHHHHHHhCC--CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCH
Confidence 1454442111100 1234567799999999999999999 999999999999999 99999999 5566664
No 330
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.5e-23 Score=170.46 Aligned_cols=137 Identities=20% Similarity=0.183 Sum_probs=104.2
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEee-----ccCCCCChHHHh----hccEEecCchHH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT-----NDIFTKEDGEFL----MRNGALPEERIR 139 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g-----~di~~~~~~e~~----~~ig~v~Q~~~~ 139 (222)
.-.+++|+ .+||++||+|++||||||||+||++-+.|+ |+|.+.. .++..+..++++ ...|||-|+|..
T Consensus 21 gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~D 100 (258)
T COG4107 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRD 100 (258)
T ss_pred CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccc
Confidence 45689999 999999999999999999999999999998 9999876 345555555543 357999999984
Q ss_pred HHHhcCCCCcc------------hHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 140 AVETGGCPHAA------------IREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 140 ~i~~g~~~~~~------------~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
-+.+......+ .....+.+..+|+++.+. ...|-.+.+ |||||||+.|||-|+ .|+++++| ||+
T Consensus 101 GLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTG 180 (258)
T COG4107 101 GLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTG 180 (258)
T ss_pred cceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCC
Confidence 33321111000 012234566788888775 367888889 999999999999999 99999999 566
Q ss_pred CCCC
Q 027509 204 GDKI 207 (222)
Q Consensus 204 G~d~ 207 (222)
|+|+
T Consensus 181 GLDV 184 (258)
T COG4107 181 GLDV 184 (258)
T ss_pred Ccch
Confidence 6664
No 331
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=4.5e-24 Score=179.63 Aligned_cols=140 Identities=19% Similarity=0.115 Sum_probs=116.8
Q ss_pred CCCCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEee-ccCCCCChHHHh-hccEEecCch
Q 027509 62 PGYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT-NDIFTKEDGEFL-MRNGALPEER 137 (222)
Q Consensus 62 ~g~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g-~di~~~~~~e~~-~~ig~v~Q~~ 137 (222)
.|+|. ++++++|+ .+||.-+|||||||||||+|.+|+|..+|+ |++++.+ .++...+..++. ..||.-||.|
T Consensus 15 F~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~P 90 (249)
T COG4674 15 FGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP 90 (249)
T ss_pred Eccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCC
Confidence 46676 89999999 999999999999999999999999999999 9999999 899887776664 4799999988
Q ss_pred H--------HHHHhcCCCCcch---------HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEE
Q 027509 138 I--------RAVETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (222)
Q Consensus 138 ~--------~~i~~g~~~~~~~---------~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlI 198 (222)
. +|+++..+....+ .+...++.+.|+..++.+..+..... |-||||++.|.+.|+ +|++++
T Consensus 91 tVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLL 170 (249)
T COG4674 91 TVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLL 170 (249)
T ss_pred eehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEE
Confidence 6 5665543322221 23446788899999999999998888 999999999999999 999999
Q ss_pred EecC-CCC
Q 027509 199 IDVS-GGD 205 (222)
Q Consensus 199 LD~t-~G~ 205 (222)
+||| .|+
T Consensus 171 lDEPvAGM 178 (249)
T COG4674 171 LDEPVAGM 178 (249)
T ss_pred ecCccCCC
Confidence 9954 444
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.89 E-value=2.4e-23 Score=202.31 Aligned_cols=130 Identities=16% Similarity=0.177 Sum_probs=100.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.+ +..+ +|+|++|++.
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y~~q~~~~l~~~~tv 400 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAYFDQHRAELDPEKTV 400 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEEEeCcccccCCCCCH
Confidence 3477899999 999999999999999999999999999998 99987 4322 5899999642
Q ss_pred -HHHHhcCCCCcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 -RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 -~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++.++.. ..........+.++|..+++. ...++.+.+ ||||||||+|||||+ +|+||||| ||+++|+..+
T Consensus 401 ~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~ 476 (635)
T PRK11147 401 MDNLAEGKQ-EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476 (635)
T ss_pred HHHHHhhcc-cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 33333211 110011123456778888875 457888888 999999999999999 99999999 7788887654
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9.1e-24 Score=205.48 Aligned_cols=141 Identities=13% Similarity=0.014 Sum_probs=99.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC----CCCChHHHhhccEEecCchHHHHH
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI----FTKEDGEFLMRNGALPEERIRAVE 142 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di----~~~~~~e~~~~ig~v~Q~~~~~i~ 142 (222)
..++++++|+ .+|+++||+|||||||||||++|+|+++|+ |+|.+++... .+......+..++||+|.......
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~ 93 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ 93 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHH
Confidence 3478899999 999999999999999999999999999998 9999887521 110011112335555553321100
Q ss_pred h------cC-CC----C---------cchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEE
Q 027509 143 T------GG-CP----H---------AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (222)
Q Consensus 143 ~------g~-~~----~---------~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlIL 199 (222)
+ .. .. . ....+...++.++|+.+++. ...++.+.+ ||||||||+|||||+ +|+||||
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLL 173 (638)
T PRK10636 94 LEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLL 173 (638)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEE
Confidence 0 00 00 0 00011124566789999986 467888889 999999999999999 9999999
Q ss_pred e-cCCCCCCCc
Q 027509 200 D-VSGGDKIPR 209 (222)
Q Consensus 200 D-~t~G~d~p~ 209 (222)
| ||+++|...
T Consensus 174 DEPtn~LD~~~ 184 (638)
T PRK10636 174 DEPTNHLDLDA 184 (638)
T ss_pred cCCCCcCCHHH
Confidence 9 777887653
No 334
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.8e-23 Score=166.30 Aligned_cols=99 Identities=23% Similarity=0.340 Sum_probs=87.3
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
.++.+++|+ ++|++++|+|+||||||||+++|+|++++. |+|.+++.++......++++.++|+||
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------ 80 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ------------ 80 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee------------
Confidence 467889999 999999999999999999999999999998 999999988765445556678999988
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
. |+||+||++|||+|+ +|+++||| |+.|+|...
T Consensus 81 -------------------------l----S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~ 115 (157)
T cd00267 81 -------------------------L----SGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS 115 (157)
T ss_pred -------------------------C----CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 3 999999999999999 99999999 666888544
No 335
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.89 E-value=3.2e-23 Score=166.34 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=79.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
.++.+++|+ ++||+++|+||||||||||+++|+|+++|+ |+|.+++. ..++|+||
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~~------------ 70 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ------------ 70 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEEcc------------
Confidence 467889999 999999999999999999999999999998 99999873 36899987
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
. |+||+||++|||||+ +|+++||| |+.|+|...+
T Consensus 71 -------------------------l----S~G~~~rv~laral~~~p~illlDEP~~~LD~~~~ 106 (144)
T cd03221 71 -------------------------L----SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106 (144)
T ss_pred -------------------------C----CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 3 999999999999999 99999999 5567775443
No 336
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.89 E-value=3.8e-23 Score=216.90 Aligned_cols=132 Identities=19% Similarity=0.148 Sum_probs=103.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++||.+||+|++|||||||+++|++++.|+ |+|.++|.|+...+...+|++|++|||++. +
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~ 1378 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRM 1378 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHH
Confidence 3578999999 999999999999999999999999999998 999999999998888899999999999986 4
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecCC-CC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVSG-GD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t~-G~ 205 (222)
|+.... ... .+ .+.++++..++. ..+|..+.+ |+|||||++|||||+ +|+|+||||++ .+
T Consensus 1379 NLdp~~--~~s-de---ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSal 1452 (1522)
T TIGR00957 1379 NLDPFS--QYS-DE---EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452 (1522)
T ss_pred HcCccc--CCC-HH---HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 443211 111 11 223334433332 234555533 999999999999999 99999999555 44
Q ss_pred C
Q 027509 206 K 206 (222)
Q Consensus 206 d 206 (222)
|
T Consensus 1453 D 1453 (1522)
T TIGR00957 1453 D 1453 (1522)
T ss_pred C
Confidence 4
No 337
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.89 E-value=5.1e-23 Score=200.91 Aligned_cols=132 Identities=15% Similarity=0.067 Sum_probs=97.6
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|.++..++.+++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.+++ +++++||||++.
T Consensus 461 ~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~ 529 (659)
T TIGR00954 461 TPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLG 529 (659)
T ss_pred CCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCc
Confidence 43334678999999 999999999999999999999999999998 9987642 357999999974
Q ss_pred ---HHHHhcCCCCc--chHHHHHHHHHHHHhcCCcccccCc---------CCC-ChHHHHHHHHHHHHc-CCCeEEEe-c
Q 027509 139 ---RAVETGGCPHA--AIREDISINLGPLEELSNLFKADLL---------LCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (222)
Q Consensus 139 ---~~i~~g~~~~~--~~~~~~~~~~~~L~~l~l~~~~d~~---------~~e-SgGqkQrv~iArAL~-~p~IlILD-~ 201 (222)
+|+.++..... ......+.+.++++.+++....++. ..+ |||||||++|||||+ +|+++||| |
T Consensus 530 tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEp 609 (659)
T TIGR00954 530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDEC 609 (659)
T ss_pred CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 55554421100 0000123455677777776544432 245 999999999999999 99999999 6
Q ss_pred CCCCCC
Q 027509 202 SGGDKI 207 (222)
Q Consensus 202 t~G~d~ 207 (222)
++++|.
T Consensus 610 ts~LD~ 615 (659)
T TIGR00954 610 TSAVSV 615 (659)
T ss_pred ccCCCH
Confidence 666664
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=99.89 E-value=3.3e-23 Score=203.87 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=100.4
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHH--
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA-- 140 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~-- 140 (222)
|.++..++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.+++ +.+|+|++|++...
T Consensus 518 y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igyv~Q~~~~~l~ 586 (718)
T PLN03073 518 YPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAVFSQHHVDGLD 586 (718)
T ss_pred eCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEEEeccccccCC
Confidence 43334578899999 999999999999999999999999999998 9998753 13689999976311
Q ss_pred ----HH--hc-CCCCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 141 ----VE--TG-GCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 141 ----i~--~g-~~~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
.. +. ..+.. ....+..+|+.+++.. ..++.+.+ |||||||++|||||+ +|+||||| ||.++|...
T Consensus 587 ~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s 662 (718)
T PLN03073 587 LSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA 662 (718)
T ss_pred cchhHHHHHHHhcCCC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 10 00 01111 1234567889999863 56788888 999999999999999 99999999 777887654
No 339
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=3.8e-23 Score=196.29 Aligned_cols=134 Identities=16% Similarity=0.046 Sum_probs=99.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCch-HHHHHhcCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVETGGC 146 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~-~~~i~~g~~ 146 (222)
.++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.+... ....++.++.. .+++.+...
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i------~~~~~l~~~lTV~EnL~l~~~ 111 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALI------AISSGLNGQLTGIENIELKGL 111 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeE------EeccccCCCCcHHHHHHhhhh
Confidence 468899999 999999999999999999999999999998 999998865210 01122223322 255544221
Q ss_pred -CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 147 -PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 147 -~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
......+....+.++++.+++....++.+.+ |+|||||++|||||+ +|+||||| |+.|+|...
T Consensus 112 ~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 112 MMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178 (549)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 1111222234566788889988888888999 999999999999999 99999999 666788653
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3e-23 Score=201.83 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=99.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhc--
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG-- 144 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g-- 144 (222)
..++.+++|+ .+|++++|+|||||||||||++|+|+++|+ |+|.+++. .+++|++|+....+...
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEFLRADES 393 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhhCCccch
Confidence 3577899999 999999999999999999999999999998 99998631 26899999742111000
Q ss_pred CCC---CcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 145 GCP---HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 145 ~~~---~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
... ..........+..+|+.|++.. ..++.+.+ ||||||||+|||+|+ +|+||||| ||.++|+..+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~ 466 (638)
T PRK10636 394 PLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR 466 (638)
T ss_pred HHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 000 0000112245667889998853 57888888 999999999999999 99999999 7788887654
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=7e-23 Score=170.43 Aligned_cols=88 Identities=24% Similarity=0.177 Sum_probs=75.1
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~ 148 (222)
++++ +|+ ++|++++|+||||||||||+++|+|+++|+ |+|.+++. .++|++|++.
T Consensus 15 ~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~q~~~---------- 71 (177)
T cd03222 15 LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKPQYID---------- 71 (177)
T ss_pred EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEcccCC----------
Confidence 4544 477 999999999999999999999999999998 99999874 2688887531
Q ss_pred cchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 149 AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 149 ~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
. |+|||||++|||||+ +|+++||| |+.++|...
T Consensus 72 ------------------------L----SgGq~qrv~laral~~~p~lllLDEPts~LD~~~ 106 (177)
T cd03222 72 ------------------------L----SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ 106 (177)
T ss_pred ------------------------C----CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 3 999999999999999 99999999 556777543
No 342
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.88 E-value=7e-23 Score=213.37 Aligned_cols=138 Identities=13% Similarity=0.085 Sum_probs=110.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC---CC-CcEEEeeccCCCCChHHHhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~---p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~----- 138 (222)
..+++++++. ++|++++|+|||||||||||++|+|+++ ++ |+|.++|.++. ..+++.++||+|+..
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~ 851 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTS 851 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCC
Confidence 4578999999 9999999999999999999999999997 67 99999999873 245678999999754
Q ss_pred ---HHHHhcCC---CC-cchHHHHHHHHHHHHhcCCcccccCcCC----C-ChHHHHHHHHHHHHc-CCC-eEEEe-cCC
Q 027509 139 ---RAVETGGC---PH-AAIREDISINLGPLEELSNLFKADLLLC----E-SGGDNLAANFSRELA-DYI-IYIID-VSG 203 (222)
Q Consensus 139 ---~~i~~g~~---~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~----e-SgGqkQrv~iArAL~-~p~-IlILD-~t~ 203 (222)
+++.+... +. ....+..+.+.++++.+++....|+.+. . |+|||||++||+||+ +|+ |+||| ||+
T Consensus 852 Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTs 931 (1394)
T TIGR00956 852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTS 931 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCC
Confidence 45544321 11 1122333567889999999888888886 6 999999999999999 996 99999 777
Q ss_pred CCCCCcc
Q 027509 204 GDKIPRK 210 (222)
Q Consensus 204 G~d~p~K 210 (222)
|+|...+
T Consensus 932 gLD~~~~ 938 (1394)
T TIGR00956 932 GLDSQTA 938 (1394)
T ss_pred CCCHHHH
Confidence 8885443
No 343
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.6e-23 Score=193.82 Aligned_cols=143 Identities=20% Similarity=0.255 Sum_probs=106.9
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|..+.+.+.+++|. .+|++++|+||+|+||||+||+|.+++..+ |.|.++|+||.......+|+.||.|||+..
T Consensus 547 Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd 626 (790)
T KOG0056|consen 547 YDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND 626 (790)
T ss_pred cCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc
Confidence 56677889999999 999999999999999999999999999987 999999999977666778899999999976
Q ss_pred ---HHHHhcCCCCcchHHHHHHHH--HHH-HhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecCCC-C
Q 027509 139 ---RAVETGGCPHAAIREDISINL--GPL-EELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVSGG-D 205 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~~--~~L-~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t~G-~ 205 (222)
.|+.++. +.+.-.+..+.+. .+- ..+...+..+..+.| ||||||||+|||+++ +|.|++|||.++ +
T Consensus 627 TI~yNIryak-~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSAL 705 (790)
T KOG0056|consen 627 TILYNIRYAK-PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSAL 705 (790)
T ss_pred eeeeheeecC-CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhc
Confidence 3444442 2222222111111 111 122333444555554 999999999999999 999999996554 4
Q ss_pred CCC
Q 027509 206 KIP 208 (222)
Q Consensus 206 d~p 208 (222)
|.+
T Consensus 706 DT~ 708 (790)
T KOG0056|consen 706 DTN 708 (790)
T ss_pred CCc
Confidence 443
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.88 E-value=1.5e-22 Score=168.30 Aligned_cols=111 Identities=16% Similarity=0.095 Sum_probs=87.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
.+++.+++|+ ++|++++|+|||||||||||++|.+ ..|+|.+++... . ..+..++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~-~----~~~~~~~~~~q------------ 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLP-K----FSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCccc-c----cccccEEEEhH------------
Confidence 4578899999 9999999999999999999999853 349998876521 1 11235778766
Q ss_pred CcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-C--CCeEEEe-cCCCCCCCcc
Q 027509 148 HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D--YIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~--p~IlILD-~t~G~d~p~K 210 (222)
.+.++.+++.. ..+..+.+ |+|||||++|||||+ + |+++||| |+.++|...+
T Consensus 68 -----------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~ 125 (176)
T cd03238 68 -----------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDI 125 (176)
T ss_pred -----------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHH
Confidence 23677788765 37788888 999999999999999 9 9999999 6667775433
No 345
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2.4e-22 Score=171.30 Aligned_cols=141 Identities=14% Similarity=0.059 Sum_probs=109.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
.++++.++++ .+|+++.|+|.||||||||+++|+|-+.|+ |+|.++|.++..++...+...++.|||+|.
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 4677899999 999999999999999999999999999998 999999999988877776677899999986
Q ss_pred --HHHHhcCCC----Ccc---hHHHHHHHHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCC
Q 027509 139 --RAVETGGCP----HAA---IREDISINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGD 205 (222)
Q Consensus 139 --~~i~~g~~~----~~~---~~~~~~~~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~ 205 (222)
+|+.+..+. ... .....+...+.++.+ +++..++..+.- ||||||.++++.|.+ .|+|++|||-+--
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA 178 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence 444332110 011 112233445556655 445677777888 999999999999999 9999999976655
Q ss_pred CCCc
Q 027509 206 KIPR 209 (222)
Q Consensus 206 d~p~ 209 (222)
-+|.
T Consensus 179 LDPk 182 (263)
T COG1101 179 LDPK 182 (263)
T ss_pred CCcc
Confidence 5443
No 346
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.87 E-value=2.9e-22 Score=209.90 Aligned_cols=132 Identities=19% Similarity=0.209 Sum_probs=104.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH-------HH
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~ 140 (222)
.+++++++|+ ++||.+||+|++|||||||+++|+|++.++|+|.++|.++...+...+|++|+||||++. +|
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 5678999999 999999999999999999999999999745999999999988888889999999999986 44
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCc-------ccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEec-CCCCC
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDV-SGGDK 206 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~-------~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~-t~G~d 206 (222)
+.... .. ..+.+.++|+.+++. ..+|..+.+ |+|||||++|||||+ +|+|||||| |.++|
T Consensus 1312 Ldp~~----~~--tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD 1385 (1490)
T TIGR01271 1312 LDPYE----QW--SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385 (1490)
T ss_pred hCccc----CC--CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCC
Confidence 43221 11 112344455555442 234555543 999999999999999 999999995 44555
No 347
>PLN03140 ABC transporter G family member; Provisional
Probab=99.87 E-value=4.1e-22 Score=208.04 Aligned_cols=139 Identities=16% Similarity=0.084 Sum_probs=108.8
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC--C-CcEEEeeccCCCCChHHHhhccEEecCchH-----
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p--~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~----- 138 (222)
+..+++++++. ++|++++|+|||||||||||++|+|..++ . |+|.++|.++. ...+++.++||+|+..
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~---~~~~~~~igyv~Q~d~~~~~l 968 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---QETFARISGYCEQNDIHSPQV 968 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC---hHHhhhheEEEccccccCCCC
Confidence 34578999999 99999999999999999999999999874 4 99999998753 2345567999999854
Q ss_pred ---HHHHhcC---CCC-cchHHHHHHHHHHHHhcCCcccccCcC-----CC-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ---RAVETGG---CPH-AAIREDISINLGPLEELSNLFKADLLL-----CE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ---~~i~~g~---~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~-----~e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
+++.+.. .+. ....+..+.+.+.++.+++....+..+ .. |||||||++||++|+ +|+|+||| ||+
T Consensus 969 TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTs 1048 (1470)
T PLN03140 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1048 (1470)
T ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 4454432 111 111233356788999999987778876 35 999999999999999 99999999 777
Q ss_pred CCCCCc
Q 027509 204 GDKIPR 209 (222)
Q Consensus 204 G~d~p~ 209 (222)
|+|...
T Consensus 1049 gLD~~~ 1054 (1470)
T PLN03140 1049 GLDARA 1054 (1470)
T ss_pred CCCHHH
Confidence 888544
No 348
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1.8e-22 Score=164.23 Aligned_cols=132 Identities=16% Similarity=0.052 Sum_probs=106.6
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC--C--CcEEEeeccCCCCChHHHhhccEEecCchHH------
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD--K--YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------ 139 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p--~--G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~------ 139 (222)
++.++||+ .+|||+.|+||+|||||||+..+.|.+.+ + |++.++++++...+. .++.+|++||++..
T Consensus 17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~qRq~GiLFQD~lLFphlsV 94 (213)
T COG4136 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQRQIGILFQDALLFPHLSV 94 (213)
T ss_pred EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hhhheeeeeccccccccccc
Confidence 45678999 99999999999999999999999999987 2 999999999865433 35789999999862
Q ss_pred --HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 140 --AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 140 --~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
|+.+...+...-+..+..+..+|++.++....++.+.+ |||||-||++-|+|+ .|+.++||||.+
T Consensus 95 g~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 95 GQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 22222222222233345677799999999999999999 999999999999999 999999997754
No 349
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.8e-22 Score=167.08 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=104.1
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeec----cCCCCChHH---H-hhccEEecCch
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGE---F-LMRNGALPEER 137 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~----di~~~~~~e---~-~~~ig~v~Q~~ 137 (222)
+.+.+.+++|+ +.|||++|-||+|||||||||+|-+-+.|+ |+|++.-. |+...++.+ + ++.||||+|..
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 35678899999 999999999999999999999999999998 99998532 333333433 2 34699999975
Q ss_pred H-----HHHHhcCCCC----cchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 138 I-----RAVETGGCPH----AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 138 ~-----~~i~~g~~~~----~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
. ..+..-..|- ........++..+|.+|++.. ...+.+.+ ||||||||+|||.|+ +.+|++|| ||..
T Consensus 103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTas 182 (235)
T COG4778 103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182 (235)
T ss_pred HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccc
Confidence 4 1111111110 111223356777899999876 45777788 999999999999999 99999999 5566
Q ss_pred CCCC
Q 027509 205 DKIP 208 (222)
Q Consensus 205 ~d~p 208 (222)
+|..
T Consensus 183 LDa~ 186 (235)
T COG4778 183 LDAT 186 (235)
T ss_pred cccc
Confidence 6643
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=4.5e-22 Score=193.41 Aligned_cols=139 Identities=19% Similarity=0.122 Sum_probs=94.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC-CCCChHHHhhccEEecCchHH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLMRNGALPEERIR------ 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di-~~~~~~e~~~~ig~v~Q~~~~------ 139 (222)
..++.+++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.+++... ........+..+++++|....
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~ 95 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQA 95 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHH
Confidence 3478899999 999999999999999999999999999998 9999876321 000000001223444443210
Q ss_pred -------HHHh--cCCC----------------CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-
Q 027509 140 -------AVET--GGCP----------------HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA- 192 (222)
Q Consensus 140 -------~i~~--g~~~----------------~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~- 192 (222)
.+.. .... .....+...++.++++.+++. .++.+.+ ||||||||+|||||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~ 173 (635)
T PRK11147 96 EYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVS 173 (635)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhc
Confidence 0000 0000 000001124566788888875 3788888 999999999999999
Q ss_pred CCCeEEEe-cCCCCCCCc
Q 027509 193 DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 193 ~p~IlILD-~t~G~d~p~ 209 (222)
+|+||||| ||+++|...
T Consensus 174 ~P~lLLLDEPt~~LD~~~ 191 (635)
T PRK11147 174 NPDVLLLDEPTNHLDIET 191 (635)
T ss_pred CCCEEEEcCCCCccCHHH
Confidence 99999999 777887654
No 351
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=5.7e-22 Score=181.47 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=112.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC------CCcEEEeeccCCCCChHHHhh----ccEEecCch
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTKEDGEFLM----RNGALPEER 137 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p------~G~I~i~g~di~~~~~~e~~~----~ig~v~Q~~ 137 (222)
..++++++|+ .+||+++|+|++|||||-..+.|+++++. +|+|.|+|.++...+..+++. +|++|||+|
T Consensus 23 ~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEP 102 (534)
T COG4172 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP 102 (534)
T ss_pred eEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccc
Confidence 3477899999 99999999999999999999999999874 379999999998777766653 799999999
Q ss_pred HHH----------HHhcCCCC--cchHHHHHHHHHHHHhcCCcc---cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe
Q 027509 138 IRA----------VETGGCPH--AAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (222)
Q Consensus 138 ~~~----------i~~g~~~~--~~~~~~~~~~~~~L~~l~l~~---~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD 200 (222)
... +.-....| ...++...++.++|+.+++.. .++.++.+ ||||||||+||.||+ +|+++|.|
T Consensus 103 MtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIAD 182 (534)
T COG4172 103 MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIAD 182 (534)
T ss_pred ccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeec
Confidence 711 11011111 222344577889999999864 57899999 999999999999999 99999999
Q ss_pred -cCCCCCCC
Q 027509 201 -VSGGDKIP 208 (222)
Q Consensus 201 -~t~G~d~p 208 (222)
||+-+|+.
T Consensus 183 EPTTALDVt 191 (534)
T COG4172 183 EPTTALDVT 191 (534)
T ss_pred CCcchhhhh
Confidence 66777754
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.86 E-value=4.2e-22 Score=207.57 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=105.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc----CCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL----RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll----~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
..+++++++. ++||+++|+||||||||||||+|+|++ .|. |+|.++|.++... ....++.++|++|+..
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~-~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI-KKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHH-HhhcCceeEEeccccccCCC
Confidence 4578999999 999999999999999999999999986 355 9999999877432 1234556999999854
Q ss_pred ----HHHHhcCC---CC-----cchHHHHHH-HHHHHHhcCCcccccCc-----CCC-ChHHHHHHHHHHHHc-CCCeEE
Q 027509 139 ----RAVETGGC---PH-----AAIREDISI-NLGPLEELSNLFKADLL-----LCE-SGGDNLAANFSRELA-DYIIYI 198 (222)
Q Consensus 139 ----~~i~~g~~---~~-----~~~~~~~~~-~~~~L~~l~l~~~~d~~-----~~e-SgGqkQrv~iArAL~-~p~IlI 198 (222)
+++.+... +. ....+..+. +..+++.+++....+.. +.. ||||||||+||++|+ +|+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 44544321 11 111121223 35578899988766554 456 999999999999999 999999
Q ss_pred Ee-cCCCCCCCc
Q 027509 199 ID-VSGGDKIPR 209 (222)
Q Consensus 199 LD-~t~G~d~p~ 209 (222)
|| ||+|+|...
T Consensus 233 lDEPTsgLD~~~ 244 (1394)
T TIGR00956 233 WDNATRGLDSAT 244 (1394)
T ss_pred EeCCCCCcCHHH
Confidence 99 788888653
No 353
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=1.4e-21 Score=168.80 Aligned_cols=134 Identities=16% Similarity=0.028 Sum_probs=103.3
Q ss_pred CCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-HHHH
Q 027509 66 SRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVE 142 (222)
Q Consensus 66 ~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-~~i~ 142 (222)
.....++++++|+ .+||.+||+|+||||||||||+|+|+++|+ |+|.++|.-. . -+--..||-|+-.- +|+.
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~-~----li~lg~Gf~pelTGreNi~ 111 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA-P----LIELGAGFDPELTGRENIY 111 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe-h----hhhcccCCCcccchHHHHH
Confidence 3345678999999 999999999999999999999999999999 9999998632 1 11235676666432 5655
Q ss_pred hcC-CCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 143 TGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 143 ~g~-~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
+.+ ...+..++..+...+..+.-.+.+..+.++.+ |.||+-|+++|.|.. +|+|||+||--+
T Consensus 112 l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvla 176 (249)
T COG1134 112 LRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLA 176 (249)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhh
Confidence 432 23333444445666677766777889999999 999999999999999 999999996543
No 354
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.85 E-value=4.2e-21 Score=183.09 Aligned_cols=129 Identities=19% Similarity=0.156 Sum_probs=95.6
Q ss_pred CCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHH-----
Q 027509 67 RRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR----- 139 (222)
Q Consensus 67 ~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~----- 139 (222)
...+++++++|+ .+|+.+||||+||||||||||+|+|.+.|+ |+|..... .+++|++|++..
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEEeCCCCCcCCCcc
Confidence 345678899999 999999999999999999999999999998 99886542 257888887651
Q ss_pred ---HHHhcCCCCcch-------------------------------HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHH
Q 027509 140 ---AVETGGCPHAAI-------------------------------REDISINLGPLEELSNLFKADLLLCE-SGGDNLA 184 (222)
Q Consensus 140 ---~i~~g~~~~~~~-------------------------------~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQr 184 (222)
.+..+..+.... .+...++..+|..|++... ++.+.+ |||||.|
T Consensus 83 v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~R 161 (530)
T COG0488 83 VLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRR 161 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHH
Confidence 111111100000 0011334456777776655 888888 9999999
Q ss_pred HHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 185 ANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 185 v~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
|+||+||+ +|+|+||| ||+.+|+
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~ 186 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDL 186 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCH
Confidence 99999999 99999999 5556664
No 355
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.4e-21 Score=177.91 Aligned_cols=138 Identities=22% Similarity=0.259 Sum_probs=106.1
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|..+.+.+++++|+ +.|++++|+||+|+||||++++|.+++.++ |.|.++|+|+.......+++.||.|||+..
T Consensus 272 y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND 351 (497)
T COG5265 272 YDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351 (497)
T ss_pred ccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh
Confidence 66778899999999 999999999999999999999999999998 999999999966555667889999999876
Q ss_pred ---HHHHhcCCCCcchHHHH-----HHHHHHHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 139 ---RAVETGGCPHAAIREDI-----SINLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~-----~~~~~~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
.|+.+++. .++..+.. .+....++.+ ....+..+.| ||||||||+|||+++ +|+|++|||.++
T Consensus 352 ti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~l--P~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deats 428 (497)
T COG5265 352 TIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATS 428 (497)
T ss_pred hHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhC--chhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhh
Confidence 33444432 22222211 1122233332 3445566655 999999999999999 999999997665
Q ss_pred C
Q 027509 205 D 205 (222)
Q Consensus 205 ~ 205 (222)
-
T Consensus 429 a 429 (497)
T COG5265 429 A 429 (497)
T ss_pred H
Confidence 3
No 356
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.84 E-value=1.8e-21 Score=195.48 Aligned_cols=146 Identities=19% Similarity=0.114 Sum_probs=115.7
Q ss_pred CCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh-HHHhhccEEecCchHHH
Q 027509 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERIRA 140 (222)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~-~e~~~~ig~v~Q~~~~~ 140 (222)
.|..+..++++++|. ++|||+|++|+|||||||++++|+|..+|+ |++.+.|.++..... .+.++.+||.||+....
T Consensus 573 ~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~ 652 (885)
T KOG0059|consen 573 VYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALW 652 (885)
T ss_pred eecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhh
Confidence 344444477899999 999999999999999999999999999999 999999999865433 34678899999986522
Q ss_pred HHhcCCCC---------cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 141 VETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 141 i~~g~~~~---------~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
-.+.+..+ ....+..+.+...++.+++....++.+.. |||+|+|+++|.||+ +|++++|| |++|.|+.
T Consensus 653 ~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~ 732 (885)
T KOG0059|consen 653 EELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK 732 (885)
T ss_pred hhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence 11211111 11122334577789999999999999999 999999999999999 99999999 58899954
Q ss_pred c
Q 027509 209 R 209 (222)
Q Consensus 209 ~ 209 (222)
.
T Consensus 733 a 733 (885)
T KOG0059|consen 733 A 733 (885)
T ss_pred H
Confidence 3
No 357
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=1.2e-20 Score=182.97 Aligned_cols=136 Identities=21% Similarity=0.207 Sum_probs=110.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC---C-CcEEEeeccCCCCChHHHhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p---~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~----- 138 (222)
..++++++.. ++||+.||+||+||||||||++|+|.... . |+|.+||... +...+++.+|||.|+..
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhhhhheeEEEcccccccccc
Confidence 4578999999 99999999999999999999999998874 3 9999999544 35567788999999876
Q ss_pred ---HHHHhc---CCCC-cchHHHHHHHHHHHHhcCCcccccCcCC-----C-ChHHHHHHHHHHHHc-CCCeEEEe-cCC
Q 027509 139 ---RAVETG---GCPH-AAIREDISINLGPLEELSNLFKADLLLC-----E-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (222)
Q Consensus 139 ---~~i~~g---~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~-----e-SgGqkQrv~iArAL~-~p~IlILD-~t~ 203 (222)
|.+.+. ..+. ....+...++.+.+++|++....|.++. - |||||+||+||..|+ +|+|+++| ||+
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTS 199 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTS 199 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCC
Confidence 333222 1221 2334556788999999999988888885 3 999999999999999 99999999 777
Q ss_pred CCCC
Q 027509 204 GDKI 207 (222)
Q Consensus 204 G~d~ 207 (222)
|+|-
T Consensus 200 GLDS 203 (613)
T KOG0061|consen 200 GLDS 203 (613)
T ss_pred Ccch
Confidence 8873
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.84 E-value=1e-20 Score=198.33 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=92.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++| .|+|++|++. +
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHH
Confidence 3578899999 999999999999999999999999999998 9999876 4899999874 6
Q ss_pred HHHhcCCCCcchHHHH-H--HHHHHHHhcCCcc--cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 140 AVETGGCPHAAIREDI-S--INLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~-~--~~~~~L~~l~l~~--~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
|+.++........+.. . ...+.++.+.... ........ |||||||++|||||+ +|+||||| |+.++|...
T Consensus 506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~ 583 (1490)
T TIGR01271 506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583 (1490)
T ss_pred HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 7776642111111111 1 1112233322111 12333455 999999999999999 99999999 777777543
No 359
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.84 E-value=8.2e-21 Score=199.45 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=91.8
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+.+++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++| .|+|++|++. +
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~e 717 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRE 717 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHH
Confidence 4678999999 999999999999999999999999999998 9999875 4899999875 6
Q ss_pred HHHhcCCCCcchHHHHHHHHH---HHHhcCCc-----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 140 AVETGGCPHAAIREDISINLG---PLEELSNL-----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~---~L~~l~l~-----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
|+.++.... .+....+.+ +.+.+... ......... |||||||++|||||+ +|+||||| |++++|.
T Consensus 718 NI~~g~~~~---~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 718 NILFGKALN---EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred HhhcCCccC---HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 666653211 111222222 12222221 123344555 999999999999999 99999999 6666664
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=99.83 E-value=4.1e-21 Score=200.65 Aligned_cols=138 Identities=17% Similarity=0.105 Sum_probs=104.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC----CCcEEEeeccCCCCChHHHhhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p----~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~----- 138 (222)
..+++++++. ++|++++|+|||||||||||++|+|+++| +|+|.++|.++.... .++.++||+|+..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 4578899999 99999999999999999999999999987 499999998874321 2467999999854
Q ss_pred ---HHHHhcCCCC-----------cchHHH---------H---------------HHHHHHHHhcCCcccc-----cCcC
Q 027509 139 ---RAVETGGCPH-----------AAIRED---------I---------------SINLGPLEELSNLFKA-----DLLL 175 (222)
Q Consensus 139 ---~~i~~g~~~~-----------~~~~~~---------~---------------~~~~~~L~~l~l~~~~-----d~~~ 175 (222)
+++.+..... ...++. . ..+..+|+.+++.... +..+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 4454431110 000110 0 1235578889987644 4556
Q ss_pred CC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 176 CE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 176 ~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
.. ||||||||+||++|+ +|+|++|| |++|+|...
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t 371 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 371 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHH
Confidence 67 999999999999999 99999999 788888543
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=99.83 E-value=9.8e-21 Score=186.43 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=95.8
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc---CCC-CcEEEeeccCCCCC--h--------H---H-Hhhc
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL---RDK-YSLAAVTNDIFTKE--D--------G---E-FLMR 129 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll---~p~-G~I~i~g~di~~~~--~--------~---e-~~~~ 129 (222)
..++.+++|+ .+|+++||+|||||||||||++|+|.. .|+ |+|.+..+++...+ . . . +...
T Consensus 190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~ 269 (718)
T PLN03073 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEE 269 (718)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 3488999999 999999999999999999999999853 455 99988766542211 1 0 0 1223
Q ss_pred cEEecCchHHHHH------hcC----CCCcch----------------HHHHHHHHHHHHhcCCc-ccccCcCCC-ChHH
Q 027509 130 NGALPEERIRAVE------TGG----CPHAAI----------------REDISINLGPLEELSNL-FKADLLLCE-SGGD 181 (222)
Q Consensus 130 ig~v~Q~~~~~i~------~g~----~~~~~~----------------~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGq 181 (222)
+++++|.+..... ++. .+.... .....++.++|..+++. ...++.+.+ ||||
T Consensus 270 ~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~ 349 (718)
T PLN03073 270 AQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGW 349 (718)
T ss_pred HHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHH
Confidence 6667765431110 000 010000 01113445677778875 346778888 9999
Q ss_pred HHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 182 NLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 182 kQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
|||++|||||+ +|+||||| ||+++|...
T Consensus 350 k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~ 379 (718)
T PLN03073 350 RMRIALARALFIEPDLLLLDEPTNHLDLHA 379 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 99999999999 99999999 667777544
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.83 E-value=2.3e-20 Score=196.26 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=93.8
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.+. +.|+|+||++. +
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHH
Confidence 4578899999 999999999999999999999999999998 998752 46999999874 5
Q ss_pred HHHhcCCCCcc-hHHHH--HHHHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 140 AVETGGCPHAA-IREDI--SINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 140 ~i~~g~~~~~~-~~~~~--~~~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
|+.++...... ..+.. ....+.++.+ ++....+....+ |||||||++|||||+ +|+||||| |++++|..
T Consensus 740 nI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 740 NILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred HHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 66554221110 01111 1122234444 444445566677 999999999999999 99999999 66777743
No 363
>PLN03232 ABC transporter C family member; Provisional
Probab=99.82 E-value=2.2e-20 Score=196.00 Aligned_cols=123 Identities=21% Similarity=0.188 Sum_probs=90.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+.+++++|+ ++|++++|+||+|||||||+++|+|+++|+ |.+. .++..|+||+|++. +
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIre 697 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVRE 697 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccccccHHH
Confidence 4578999999 999999999999999999999999999997 8763 12457999999986 7
Q ss_pred HHHhcCCCCcchHHHHHHHHHHH---HhcC-CcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPL---EELS-NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L---~~l~-l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
|+.+|. +. . .+....+.+++ +++. +....+..+.+ |||||||++|||||. +|+||||| +++++|
T Consensus 698 NI~fg~-~~-~-~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 698 NILFGS-DF-E-SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred HhhcCC-cc-C-HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 888774 22 1 12222222211 1111 12233344443 999999999999999 99999999 666666
No 364
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.81 E-value=7.7e-20 Score=167.22 Aligned_cols=140 Identities=17% Similarity=0.073 Sum_probs=106.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
.-+.-+|++ ++||++-|+|.||||||||+++|+|+++|+ |+|.+||+++...+..+.|+-++.||.+...+-.+-+..
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 335668888 999999999999999999999999999998 999999999988888888888888887765433332222
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCC---ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCCc
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCE---SGGDNLAANFSRELA-DYIIYIIDVSGGDKIPR 209 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e---SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p~ 209 (222)
.....+.+...++.|+.-......|..+.. |.|||+|+++.-||+ +.+|+||||-.-|++|.
T Consensus 417 ~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPa 482 (546)
T COG4615 417 GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPA 482 (546)
T ss_pred cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChH
Confidence 222233344444444433333333444443 999999999999999 99999999998888773
No 365
>PLN03130 ABC transporter C family member; Provisional
Probab=99.81 E-value=6.7e-20 Score=193.30 Aligned_cols=120 Identities=22% Similarity=0.217 Sum_probs=89.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC--CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~--G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
.+.+++++|+ ++|++++|+||+|||||||+++|+|.++|+ |+|.+ +..|+||+|++.
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIr 696 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFNATVR 696 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccccCCCCHH
Confidence 4578999999 999999999999999999999999999985 68763 346999999986
Q ss_pred HHHHhcCCCCcchHHHHHHHHH------HHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 139 RAVETGGCPHAAIREDISINLG------PLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~------~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
+|+.+|.. . . .+....+.+ .++.+ ....+..+.+ |||||||++|||||. +|+||||| +++++
T Consensus 697 eNI~fg~~-~-d-~e~y~~vl~a~~L~~di~~L--P~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 697 DNILFGSP-F-D-PERYERAIDVTALQHDLDLL--PGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred HHHhCCCc-c-c-HHHHHHHHHHhCcHHHHHhC--CCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 78877743 2 1 122222222 12222 1223344433 999999999999999 99999999 66666
Q ss_pred C
Q 027509 206 K 206 (222)
Q Consensus 206 d 206 (222)
|
T Consensus 772 D 772 (1622)
T PLN03130 772 D 772 (1622)
T ss_pred C
Confidence 6
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.80 E-value=4.1e-20 Score=155.77 Aligned_cols=119 Identities=14% Similarity=0.059 Sum_probs=84.7
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC----------CcEEEeeccCCCCChHHHhhccEEecCchHHHHH
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK----------YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~----------G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~ 142 (222)
.++++ .+| +++|+|||||||||||++|++++.+. +.+.+.+.++.. ...++.++|+||++..+
T Consensus 15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred CeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc--
Confidence 46666 678 99999999999999999999997553 356666665532 12346799999987644
Q ss_pred hcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-----CCCeEEEe-cCCCCCCC
Q 027509 143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-----~p~IlILD-~t~G~d~p 208 (222)
++.. ...++.++++. ....+..+.+ |+|||||++||++|+ +|+++||| |+.|+|..
T Consensus 89 ~~~~-------~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~ 151 (197)
T cd03278 89 YSII-------SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA 151 (197)
T ss_pred eeEE-------ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH
Confidence 1110 11234445555 3445777788 999999999999984 56899999 55567644
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=4.9e-19 Score=181.96 Aligned_cols=142 Identities=20% Similarity=0.190 Sum_probs=107.2
Q ss_pred CCCCC-CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHH
Q 027509 64 YFSRR-APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA 140 (222)
Q Consensus 64 ~~~~~-~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~ 140 (222)
.|... .+++++++|. ++||.|||+|..|||||||+++|-++..|. |+|.++|.||....-.++|++++.+||+|..+
T Consensus 1147 RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLF 1226 (1381)
T KOG0054|consen 1147 RYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLF 1226 (1381)
T ss_pred EeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCcee
Confidence 34443 4567999999 999999999999999999999999999998 99999999999988899999999999999732
Q ss_pred ---HHhcCCCCcchHHHHHHHHHHHHhcCC-------cccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecC-C
Q 027509 141 ---VETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVS-G 203 (222)
Q Consensus 141 ---i~~g~~~~~~~~~~~~~~~~~L~~l~l-------~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t-~ 203 (222)
+.+...|..... | +..-++|+...+ ...+|..+.| |.||||.+++||||+ +.+|+||||. .
T Consensus 1227 sGTvR~NLDPf~e~s-D-~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATA 1304 (1381)
T KOG0054|consen 1227 SGTVRFNLDPFDEYS-D-DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATA 1304 (1381)
T ss_pred cCccccccCcccccC-H-HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccc
Confidence 111122322111 1 122223333322 2346666665 999999999999999 9999999954 4
Q ss_pred CCCC
Q 027509 204 GDKI 207 (222)
Q Consensus 204 G~d~ 207 (222)
..|.
T Consensus 1305 sVD~ 1308 (1381)
T KOG0054|consen 1305 SVDP 1308 (1381)
T ss_pred cCCh
Confidence 4543
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.78 E-value=3.5e-19 Score=169.92 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=98.3
Q ss_pred CCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHH
Q 027509 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141 (222)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i 141 (222)
.|.++..++.+++|. .+|+.+||+||||+|||||||+|+|.+.|. |+|.+... .++||+.|+.....
T Consensus 330 ~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~igyf~Q~~~~l~ 398 (530)
T COG0488 330 GYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIGYFDQHRDELD 398 (530)
T ss_pred ccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEEEEEehhhhcC
Confidence 454446788899999 999999999999999999999999999997 98886442 25899999864211
Q ss_pred H-hcCCCCc-chH-H-HHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecC-CCCCCCc
Q 027509 142 E-TGGCPHA-AIR-E-DISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVS-GGDKIPR 209 (222)
Q Consensus 142 ~-~g~~~~~-~~~-~-~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t-~G~d~p~ 209 (222)
. .....++ ... + ....+...|..|++.. ...+.+.. |||||.|+.||+.++ +|.||||||| .-+|+..
T Consensus 399 ~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s 474 (530)
T COG0488 399 PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474 (530)
T ss_pred ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHH
Confidence 0 0000000 000 0 1345667888888764 45666777 999999999999999 9999999955 4555543
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=4.6e-19 Score=151.99 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=79.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHH-HHHHcCcCCCCcEEEee----------ccCCCCChHHHh-hccEEecC
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALM-LALCKFLRDKYSLAAVT----------NDIFTKEDGEFL-MRNGALPE 135 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLL-k~L~Gll~p~G~I~i~g----------~di~~~~~~e~~-~~ig~v~Q 135 (222)
..++.+++|+ ++||+++|+||||||||||+ .+|.. .|++.+.. ..+...+....+ ....+..|
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAID 83 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH----HHHHHHhhcccchhhhhhcccCccccccccCCCceEEec
Confidence 4577899999 99999999999999999996 33321 12221100 000000000111 11222222
Q ss_pred chHH------H-------HHhcCCCCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CC--CeE
Q 027509 136 ERIR------A-------VETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY--IIY 197 (222)
Q Consensus 136 ~~~~------~-------i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p--~Il 197 (222)
++.. . ..+. ......+......+.|+.+++.. ..++.+.+ |+||+||++|||||+ +| +++
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~ll 161 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYL--RLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLY 161 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEE
Confidence 2110 0 0000 00001111222356788888876 47888999 999999999999999 87 599
Q ss_pred EEe-cCCCCCCCc
Q 027509 198 IID-VSGGDKIPR 209 (222)
Q Consensus 198 ILD-~t~G~d~p~ 209 (222)
||| |+.|+|...
T Consensus 162 llDEPt~gLD~~~ 174 (226)
T cd03270 162 VLDEPSIGLHPRD 174 (226)
T ss_pred EEeCCccCCCHHH
Confidence 999 566777543
No 370
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.77 E-value=1.3e-19 Score=152.04 Aligned_cols=131 Identities=52% Similarity=0.848 Sum_probs=111.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhc-CCCCcchHHHHHHHHH
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG-GCPHAAIREDISINLG 160 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g-~~~~~~~~~~~~~~~~ 160 (222)
-.+++.||.|||||||+..++..++...++.+...|+.+.+++++.++. +..+...+++| .| |. +..++.+
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~C-H~----da~m~~~ 85 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGC-HL----DASMNLE 85 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCcc-CC----cHHHHHH
Confidence 5899999999999999999999998778999999999887777776653 55566777888 55 73 6677788
Q ss_pred HHHhcCCccc-ccCcCCCChHHHHHHHHHHHHc-CCCeEEEecCCCCCCCccCCCceeecccc
Q 027509 161 PLEELSNLFK-ADLLLCESGGDNLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLL 221 (222)
Q Consensus 161 ~L~~l~l~~~-~d~~~~eSgGqkQrv~iArAL~-~p~IlILD~t~G~d~p~K~~~~~~~~~~~ 221 (222)
++++|..... +|.++.||+| +..+-.+-.|. .-.|+|+|+++|+|+|+|+|||++.|||+
T Consensus 86 ai~~l~~~~~~~Dll~iEs~G-NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~aDll 147 (202)
T COG0378 86 AIEELVLDFPDLDLLFIESVG-NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFKADLL 147 (202)
T ss_pred HHHHHhhcCCcCCEEEEecCc-ceecccCcchhhceEEEEEECCCCCCCcccCCCceeEeeEE
Confidence 8888766543 7999999999 88888888888 69999999999999999999999999986
No 371
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.76 E-value=2.8e-19 Score=151.74 Aligned_cols=145 Identities=18% Similarity=0.040 Sum_probs=87.6
Q ss_pred ccCCCCCCCCCCCcccCCCC--CCCcEEEEEcCCCChHHHHHHHHHcCc-CCC-CcEEEeeccCCCCChHHHhhccEEec
Q 027509 59 IYSPGYFSRRAPPILSRNFN--ERAFTVGIGGPVGTGKTALMLALCKFL-RDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (222)
Q Consensus 59 ~~~~g~~~~~~~~~~~~~~~--~~GeivgIiGpNGSGKSTLLk~L~Gll-~p~-G~I~i~g~di~~~~~~e~~~~ig~v~ 134 (222)
+++.++|.++ +.++|. .+|++++|+|||||||||||++|++.+ -+. +..... .........+....++++|
T Consensus 8 l~nf~~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~f 82 (213)
T cd03279 8 LKNFGPFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEVSFTF 82 (213)
T ss_pred EECCcCcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEEEEEE
Confidence 4566776632 456676 459999999999999999999999644 333 333322 1000111223345688998
Q ss_pred CchHHHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-C----------CCeEEEe-c
Q 027509 135 EERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D----------YIIYIID-V 201 (222)
Q Consensus 135 Q~~~~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~----------p~IlILD-~ 201 (222)
|.....+...........+..+.. .+....+....+..+.+ |+||+||++|||||+ . |+++||| |
T Consensus 83 ~~~~~~~~~~r~~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp 160 (213)
T cd03279 83 QLGGKKYRVERSRGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEG 160 (213)
T ss_pred EECCeEEEEEEecCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCC
Confidence 876321111111112111111111 23333344566788888 999999999999997 4 5799999 5
Q ss_pred CCCCCCCcc
Q 027509 202 SGGDKIPRK 210 (222)
Q Consensus 202 t~G~d~p~K 210 (222)
+.++|...+
T Consensus 161 ~~~lD~~~~ 169 (213)
T cd03279 161 FGTLDPEAL 169 (213)
T ss_pred cccCCHHHH
Confidence 567775433
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.76 E-value=3.6e-18 Score=146.60 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=80.2
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcC----------------cCCC-C--------cEEE
Q 027509 59 IYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF----------------LRDK-Y--------SLAA 113 (222)
Q Consensus 59 ~~~~g~~~~~~~~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gl----------------l~p~-G--------~I~i 113 (222)
+.+..+|.+... +..+ .+++++|+|||||||||||++|+++ +.+. | +|.+
T Consensus 6 ~~nfksy~~~~~-~~~~----~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~ 80 (243)
T cd03272 6 IQGFKSYKDQTV-IEPF----SPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIF 80 (243)
T ss_pred EeCccCcccCcc-cccC----CCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEE
Confidence 556667764322 1112 2789999999999999999999843 4443 4 4444
Q ss_pred eeccCC-C--CChHHHhhccEEecCchHHHHHhcCCCCcchHHHHHHHHHHHHh--------------------cCCccc
Q 027509 114 VTNDIF-T--KEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE--------------------LSNLFK 170 (222)
Q Consensus 114 ~g~di~-~--~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~~~~~L~~--------------------l~l~~~ 170 (222)
++.+-. . .....+++.+++++|+...+ . ..... + .+...+.. +.+...
T Consensus 81 ~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~----~-~~~t~-~---ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~ 151 (243)
T cd03272 81 DNSDNRFPIDKEEVRLRRTIGLKKDEYFLD----K-KNVTK-N---DVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQD 151 (243)
T ss_pred EcCCCccCCCCCEEEEEEEEECCCCEEEEC----C-eEcCH-H---HHHHHHHHcCCCCCCCcEEEEcCchHHhhhcccc
Confidence 442210 0 11123445678877753210 0 00010 0 11111222 222223
Q ss_pred ccCcCCC-ChHHHHHHHHHHHHc-----CCCeEEEe-cCCCCCCCcc
Q 027509 171 ADLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 171 ~d~~~~e-SgGqkQrv~iArAL~-----~p~IlILD-~t~G~d~p~K 210 (222)
.+..+.+ |+||+||++|||||+ +|+++||| |+.++|...+
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~ 198 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYR 198 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHH
Confidence 4566777 999999999999994 48999999 6677775433
No 373
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=1.3e-17 Score=171.65 Aligned_cols=120 Identities=23% Similarity=0.297 Sum_probs=89.5
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------HHH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~i 141 (222)
.+++++|. ++|+.++|+|+.|||||+||.+|+|-++.. |+|.++|. ++|+||.+- +|+
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNI 602 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENI 602 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhh
Confidence 68899999 999999999999999999999999999987 99998874 799999986 788
Q ss_pred HhcCCCCcchHHHHHHHHHH---HHhcCCccccc-CcCCC-----ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 142 ETGGCPHAAIREDISINLGP---LEELSNLFKAD-LLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~---L~~l~l~~~~d-~~~~e-----SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
.||..... +..+.+.++ .+++.+...-| ..++| |||||||+++|||+. +++||+|| |-+-.|
T Consensus 603 LFG~~~d~---~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVD 675 (1381)
T KOG0054|consen 603 LFGSPYDE---ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVD 675 (1381)
T ss_pred hcCccccH---HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhh
Confidence 88754322 222233222 12222221111 12222 999999999999999 99999999 544444
No 374
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.72 E-value=5.4e-18 Score=147.04 Aligned_cols=130 Identities=21% Similarity=0.188 Sum_probs=87.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC--CcEEEeec-cCCCCC-h-HHHhhccEEecCchHH---------------
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTN-DIFTKE-D-GEFLMRNGALPEERIR--------------- 139 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~--G~I~i~g~-di~~~~-~-~e~~~~ig~v~Q~~~~--------------- 139 (222)
...+++|+||||||||||+++|++++.++ +++.+.+. ++.... . ......+.++||++..
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 36789999999999999999999999875 57777665 332111 1 1223478999997421
Q ss_pred --HHHhcCCC-C-c-chHHHHHHHHHHHHhcCCc--------------------ccccCcCCC-ChHHHHHHHHHHHHc-
Q 027509 140 --AVETGGCP-H-A-AIREDISINLGPLEELSNL--------------------FKADLLLCE-SGGDNLAANFSRELA- 192 (222)
Q Consensus 140 --~i~~g~~~-~-~-~~~~~~~~~~~~L~~l~l~--------------------~~~d~~~~e-SgGqkQrv~iArAL~- 192 (222)
++..+... + . ......+.+.++|+.+++. ...+..+.+ |+|||||++|||||+
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 11111111 0 1 0112335677788888875 234567778 999999999999884
Q ss_pred ----CCCeEEEe-cCCCCCCCc
Q 027509 193 ----DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 193 ----~p~IlILD-~t~G~d~p~ 209 (222)
+|+++||| |+.++|...
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~ 205 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSH 205 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHH
Confidence 57999999 555777443
No 375
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.71 E-value=4.6e-17 Score=153.57 Aligned_cols=143 Identities=19% Similarity=0.203 Sum_probs=113.7
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH-HHhhccEEecCchH---------
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------- 138 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~-e~~~~ig~v~Q~~~--------- 138 (222)
.+.+++|+ .+|||+||.|--|||+|-|+++|.|+.++. |+|.++|+++...++. .++..|+|||.++-
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 35689999 999999999999999999999999988887 9999999988777665 45668999999875
Q ss_pred --HHHHhcCCC------CcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 --RAVETGGCP------HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 --~~i~~g~~~------~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+|+.+.... ....++..+.+.+..+.|.+.. ..+..+.+ |||.||||.|||.|+ +|+|+||| ||-|.|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 344332111 1122334456667788888764 46677888 999999999999999 99999999 888999
Q ss_pred CCccCCC
Q 027509 207 IPRKGGP 213 (222)
Q Consensus 207 ~p~K~~~ 213 (222)
+-.|..+
T Consensus 434 VGAK~eI 440 (500)
T COG1129 434 VGAKAEI 440 (500)
T ss_pred cchHHHH
Confidence 9888643
No 376
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.68 E-value=4.3e-17 Score=153.56 Aligned_cols=132 Identities=15% Similarity=0.154 Sum_probs=96.1
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHH-
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV- 141 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i- 141 (222)
|.+...+.++++|. +.++-++|+||||||||||||+++|.+.|+ |.|.-..... +++.-|...+.+
T Consensus 399 y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~-----------~~~y~Qh~~e~ld 467 (614)
T KOG0927|consen 399 YSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK-----------LPRYNQHLAEQLD 467 (614)
T ss_pred CCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc-----------chhhhhhhHhhcC
Confidence 45444677899999 999999999999999999999999999998 9876543322 122223222111
Q ss_pred ------H--hcCCCCcchHHHHHHHHHHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 142 ------E--TGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 142 ------~--~g~~~~~~~~~~~~~~~~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+ +..++. ......+..+|.++++... .+..+.. |.|||.||.+|+.++ .|.|+||| ||.++|++.
T Consensus 468 l~~s~le~~~~~~~~---~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~t 544 (614)
T KOG0927|consen 468 LDKSSLEFMMPKFPD---EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET 544 (614)
T ss_pred cchhHHHHHHHhccc---cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchh
Confidence 1 111111 1133456678999999854 4555566 999999999999999 99999999 888999886
Q ss_pred c
Q 027509 210 K 210 (222)
Q Consensus 210 K 210 (222)
+
T Consensus 545 i 545 (614)
T KOG0927|consen 545 I 545 (614)
T ss_pred H
Confidence 4
No 377
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.68 E-value=7.9e-17 Score=154.70 Aligned_cols=125 Identities=19% Similarity=0.085 Sum_probs=86.8
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
...++.++|. ++|+-+-|.||||||||||+|+|+|+.+-- |+|.+-. -.++-|+||.|+ +
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHH
Confidence 3578899999 999999999999999999999999999865 8766430 134688888887 3
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccc------cCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC-CCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKA------DLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG-DKI 207 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~------d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G-~d~ 207 (222)
.+.....+. .+ .-+...++|.++++.+.. +.--.. |+|||||+++||.|+ +|++++|||+++ +|.
T Consensus 475 ~l~YP~~~~-~~--~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 475 ALCYPNAAP-DF--SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HHhCCCCCC-CC--ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 332221111 11 112344455555554321 111223 999999999999999 999999996654 443
No 378
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.67 E-value=7.8e-18 Score=140.25 Aligned_cols=136 Identities=11% Similarity=0.062 Sum_probs=104.0
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcc---
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--- 150 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~--- 150 (222)
++.. ..||++-+||||||||||||-.++|+++.+|+|.+.|.++..++..++.+.-+|+.|.....+.+..+.+..
T Consensus 18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q 97 (248)
T COG4138 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ 97 (248)
T ss_pred cccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC
Confidence 3444 679999999999999999999999999989999999999988877888888888887544221121111111
Q ss_pred -hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc--CC------CeEEEe-cCCCCCCCcc
Q 027509 151 -IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA--DY------IIYIID-VSGGDKIPRK 210 (222)
Q Consensus 151 -~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~--~p------~IlILD-~t~G~d~p~K 210 (222)
.++....+..+...+++.+++.+.+.. ||||=|||-+|..++ .| +++|+| |..++|+.-|
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~ 168 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ 168 (248)
T ss_pred chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHH
Confidence 133345566677888888889898999 999999999998774 33 489999 6677776544
No 379
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.66 E-value=1.2e-16 Score=148.48 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=79.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------HHHHhcCCCCcc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHAA 150 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~i~~g~~~~~~ 150 (222)
..||++|++||||-||||++++|+|.++|+ |. ..+ -+++|-||-.. +.+.....+..
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~~- 429 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRSA- 429 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhhh-
Confidence 579999999999999999999999999998 76 111 13555555322 22221111100
Q ss_pred hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCC
Q 027509 151 IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSG 203 (222)
Q Consensus 151 ~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~ 203 (222)
+ ..-....++++-|+++..+++.+.+ ||||.|||+||.+|+ +++|||||||+
T Consensus 430 ~-~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPS 483 (591)
T COG1245 430 F-GSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPS 483 (591)
T ss_pred c-ccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCch
Confidence 0 0112334577888888899999999 999999999999999 99999999664
No 380
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.65 E-value=4.3e-16 Score=137.02 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=84.8
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHH-----cCc-----CCC-----------C-cEEEeeccCCCCChHHHh
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALC-----KFL-----RDK-----------Y-SLAAVTNDIFTKEDGEFL 127 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~-----Gll-----~p~-----------G-~I~i~g~di~~~~~~e~~ 127 (222)
-++++++. +.|.+++|+|++|||||||++.+. ..+ .|. . -|.++..+|.. +.+...
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~-~~rs~~ 88 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR-TPRSNP 88 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC-CCCCcH
Confidence 45678888 999999999999999999999663 111 011 1 24444444422 211111
Q ss_pred hccEEecCchH--------------HHHHhcCC-------CCcchHH---------HHHHHHHHHHhcCCcc-cccCcCC
Q 027509 128 MRNGALPEERI--------------RAVETGGC-------PHAAIRE---------DISINLGPLEELSNLF-KADLLLC 176 (222)
Q Consensus 128 ~~ig~v~Q~~~--------------~~i~~g~~-------~~~~~~~---------~~~~~~~~L~~l~l~~-~~d~~~~ 176 (222)
..+..+||+.. +.+..... ..+++.+ ......++|+.+++.. .+++.+.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~ 168 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT 168 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence 11122233211 11111100 0111111 1234566888899876 5788888
Q ss_pred C-ChHHHHHHHHHHHHc-C---CCeEEEe-cCCCCCCCcc
Q 027509 177 E-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 177 e-SgGqkQrv~iArAL~-~---p~IlILD-~t~G~d~p~K 210 (222)
+ |+||+||+.|||+|+ + |++|||| |++|+|...+
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~ 208 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDV 208 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHH
Confidence 8 999999999999999 6 6999999 7778875433
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.65 E-value=1.4e-17 Score=141.97 Aligned_cols=131 Identities=12% Similarity=0.064 Sum_probs=75.6
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH
Q 027509 59 IYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 59 ~~~~g~~~~~~~~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
+.+...|.+.. .+.++++ ++++|+|||||||||||++|+-+ .|.++. ....+++++++|+..
T Consensus 8 l~nfk~~~~~~-~l~~~~~----~i~~ivGpNGaGKSTll~~i~~~---------~G~~~~----~~~~~~i~~~~~~~~ 69 (212)
T cd03274 8 LENFKSYAGEQ-VIGPFHK----SFSAIVGPNGSGKSNVIDSMLFV---------FGFRAS----KMRQKKLSDLIHNSA 69 (212)
T ss_pred EECcccCCCCe-eeccCCC----CeEEEECCCCCCHHHHHHHHHHH---------hccCHH----HhhhhhHHHHhcCCC
Confidence 44566665433 3334555 89999999999999999999822 121110 001123455544422
Q ss_pred H--------------------HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-C---
Q 027509 139 R--------------------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D--- 193 (222)
Q Consensus 139 ~--------------------~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~--- 193 (222)
. .+...+..... ....-...++++.+++....++.+.. |+|||||++||||++ .
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~ 148 (212)
T cd03274 70 GHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDH-NRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYK 148 (212)
T ss_pred CCCCCceEEEEEEEEeCCCHHHHHHCCcCCCC-CceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccC
Confidence 0 00000000000 00000012344556666666777777 999999999999996 3
Q ss_pred -CCeEEEe-cCCCCCCC
Q 027509 194 -YIIYIID-VSGGDKIP 208 (222)
Q Consensus 194 -p~IlILD-~t~G~d~p 208 (222)
|+++||| |+.|+|..
T Consensus 149 ~p~ililDEPt~gLD~~ 165 (212)
T cd03274 149 PTPLYVMDEIDAALDFR 165 (212)
T ss_pred CCCEEEEcCCCcCCCHH
Confidence 7999999 66777754
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.65 E-value=1.3e-16 Score=135.05 Aligned_cols=124 Identities=19% Similarity=0.109 Sum_probs=74.4
Q ss_pred cCCCCCCCcEEEEEcCCCChHHHHHHHHH----cCcCCC-CcEEEeeccCCCCChHHHhhccEEecCch-HHHHHhcCCC
Q 027509 74 SRNFNERAFTVGIGGPVGTGKTALMLALC----KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVETGGCP 147 (222)
Q Consensus 74 ~~~~~~~GeivgIiGpNGSGKSTLLk~L~----Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~-~~~i~~g~~~ 147 (222)
.++|++ | +++|+|||||||||||++|+ |...++ +.+..+...+.. .+....++++||++ ...+... .
T Consensus 17 ~l~~~~-g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~--r 89 (204)
T cd03240 17 EIEFFS-P-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTIT--R 89 (204)
T ss_pred EEecCC-C-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEE--E
Confidence 345553 3 99999999999999999995 887776 655522222211 22345789999886 2111100 0
Q ss_pred CcchHHHHHHH-HHHHHhcCCcccccCcCCC-ChHHHHH------HHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 148 HAAIREDISIN-LGPLEELSNLFKADLLLCE-SGGDNLA------ANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 148 ~~~~~~~~~~~-~~~L~~l~l~~~~d~~~~e-SgGqkQr------v~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
...+.++.... .+.+ ...++..+.. |+||+|| ++|||||+ +|+++||| |+.++|...
T Consensus 90 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~ 156 (204)
T cd03240 90 SLAILENVIFCHQGES-----NWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN 156 (204)
T ss_pred EhhHhhceeeechHHH-----HHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH
Confidence 00111110000 0000 1112566667 9999996 78999999 99999999 555666543
No 383
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=1.4e-16 Score=161.91 Aligned_cols=138 Identities=17% Similarity=0.094 Sum_probs=108.0
Q ss_pred CCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC---CCcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 67 RRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 67 ~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p---~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
++..++++++=- .+|-+++|+|+|||||||||++|+|-..- +|+|.++|.+.. ..-++|.+|||-|+..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~---q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD---QETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc---hhhhccccceeecccccCcc
Confidence 345567777776 99999999999999999999999997654 399999998763 2567889999999876
Q ss_pred ----HHHHhc---CCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-----ChHHHHHHHHHHHHc-CC-CeEEEe-cC
Q 027509 139 ----RAVETG---GCPH-AAIREDISINLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DY-IIYIID-VS 202 (222)
Q Consensus 139 ----~~i~~g---~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p-~IlILD-~t 202 (222)
|-+.+. +.+. ....+..+.+.+.++.++++...|.++.. |..||+|+.||-.|+ +| .||+|| ||
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 333322 2222 22233447788899999998888877766 889999999999999 99 899999 77
Q ss_pred CCCCC
Q 027509 203 GGDKI 207 (222)
Q Consensus 203 ~G~d~ 207 (222)
+|+|-
T Consensus 959 SGLDs 963 (1391)
T KOG0065|consen 959 SGLDS 963 (1391)
T ss_pred CCccH
Confidence 78874
No 384
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.60 E-value=4.9e-16 Score=132.90 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=105.6
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-----CcEEEeeccCCCCChHHHhh----ccEEecCchHH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAVTNDIFTKEDGEFLM----RNGALPEERIR 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-----G~I~i~g~di~~~~~~e~~~----~ig~v~Q~~~~ 139 (222)
.++.+++++ .+|||-||+|++|||||-..++|||..+.. -+..+++.++....+.++++ .|+++||+|..
T Consensus 21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s 100 (330)
T COG4170 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence 378889999 999999999999999999999999998863 45667788887777766654 68899999871
Q ss_pred ----------H-HH-hcCCCCc-chHH----HHHHHHHHHHhcCCcc---cccCcCCC-ChHHHHHHHHHHHHc-CCCeE
Q 027509 140 ----------A-VE-TGGCPHA-AIRE----DISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (222)
Q Consensus 140 ----------~-i~-~g~~~~~-~~~~----~~~~~~~~L~~l~l~~---~~d~~~~e-SgGqkQrv~iArAL~-~p~Il 197 (222)
+ +. +....+. .+.+ ...++.++|.++++++ ....++.| .-|+.|+|+||.|++ +|.++
T Consensus 101 CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLL 180 (330)
T COG4170 101 CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceE
Confidence 1 11 1111111 1111 2256778899999875 45678888 999999999999999 99999
Q ss_pred EEecCCCCCCC
Q 027509 198 IIDVSGGDKIP 208 (222)
Q Consensus 198 ILD~t~G~d~p 208 (222)
|.|||+..-.|
T Consensus 181 IADEPTN~~e~ 191 (330)
T COG4170 181 IADEPTNSMEP 191 (330)
T ss_pred eccCCCcccCc
Confidence 99988776544
No 385
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.59 E-value=1.6e-15 Score=127.82 Aligned_cols=116 Identities=18% Similarity=0.032 Sum_probs=71.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeec---cCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHHHH
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN---DIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~---di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~~ 158 (222)
.+.+|+|||||||||||.+|+-.+..+-.....+. ++... ......|.++|++... ..+.........+
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~--~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~ 93 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKD--GESSAKITVTLKNQGL------DANPLCVLSQDMA 93 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhC--CCCeEEEEEEEEcCCc------cCCcCCHHHHHHH
Confidence 38899999999999999999865443210111111 11110 0112346666665321 1111111122345
Q ss_pred HHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHH----c-CCCeEEEe-cCCCCCCC
Q 027509 159 LGPLEELSNLFKADLLLCE-SGGDNLAANFSREL----A-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 159 ~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL----~-~p~IlILD-~t~G~d~p 208 (222)
.++|+. ....+..+.+ |+|||||++||+|| + +|+++||| |+.|+|..
T Consensus 94 ~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 94 RSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred HHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 556655 4456777888 99999999999999 7 99999999 66777754
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.56 E-value=5.3e-15 Score=128.23 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=72.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeec-cCCCC------ChHHHhhccEEecCchHHH-----HHhcCCC-
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN-DIFTK------EDGEFLMRNGALPEERIRA-----VETGGCP- 147 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~-di~~~------~~~e~~~~ig~v~Q~~~~~-----i~~g~~~- 147 (222)
.+++|+|||||||||||.+|++++.++ +++...+. ++... ...+..-.+.|..|+.... +.-+...
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 499999999999999999999998876 66654332 11110 1112222334443432210 0000000
Q ss_pred Cc-chHHHHHHHHHHHHhcCCccc----------------------ccCcCCC-ChHHHHHHHHHHHHc-C----CCeEE
Q 027509 148 HA-AIREDISINLGPLEELSNLFK----------------------ADLLLCE-SGGDNLAANFSRELA-D----YIIYI 198 (222)
Q Consensus 148 ~~-~~~~~~~~~~~~L~~l~l~~~----------------------~d~~~~e-SgGqkQrv~iArAL~-~----p~IlI 198 (222)
.. ........+.+.++.+++... .+..+.+ |+||+||++|||+|+ + |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 00 000112233456666665311 1223366 999999999999998 6 89999
Q ss_pred Ee-cCCCCCCC
Q 027509 199 ID-VSGGDKIP 208 (222)
Q Consensus 199 LD-~t~G~d~p 208 (222)
|| |+.++|..
T Consensus 183 lDEPt~~LD~~ 193 (247)
T cd03275 183 LDEVDAALDNT 193 (247)
T ss_pred EecccccCCHH
Confidence 99 56677653
No 387
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=138.28 Aligned_cols=128 Identities=20% Similarity=0.071 Sum_probs=85.8
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHH------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------ 139 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~------ 139 (222)
...++.+++|. ++|+.+-|+||||||||+|||+|.|+++-. |++..-...- + +.+-||||.|+.
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----~----~~lfflPQrPYmt~GTLR 518 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----P----KDLFFLPQRPYMTLGTLR 518 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC----C----CceEEecCCCCccccchh
Confidence 44567789999 999999999999999999999999999977 8887543221 1 458999999872
Q ss_pred -HHHhcCC---CCcchHHHHHHHHHHHHhcCCcc------ccc----Cc-CCC-ChHHHHHHHHHHHHc-CCCeEEEecC
Q 027509 140 -AVETGGC---PHAAIREDISINLGPLEELSNLF------KAD----LL-LCE-SGGDNLAANFSRELA-DYIIYIIDVS 202 (222)
Q Consensus 140 -~i~~g~~---~~~~~~~~~~~~~~~L~~l~l~~------~~d----~~-~~e-SgGqkQrv~iArAL~-~p~IlILD~t 202 (222)
++.+... ...... +-..+.+.|+.+.+.. ..| .- ... |+|||||+++||.+. +|++-||||+
T Consensus 519 dQvIYP~~~~~~~~~~~-~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 519 DQVIYPLKAEDMDSKSA-SDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred heeeccCccccccccCC-CHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 2211100 000000 0112233333333211 122 11 223 999999999999999 9999999987
Q ss_pred CC
Q 027509 203 GG 204 (222)
Q Consensus 203 ~G 204 (222)
+.
T Consensus 598 TS 599 (659)
T KOG0060|consen 598 TS 599 (659)
T ss_pred hh
Confidence 75
No 388
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=4.2e-15 Score=139.56 Aligned_cols=132 Identities=15% Similarity=0.078 Sum_probs=76.8
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeec--cCCCCChHHHhhccEEecCchH-HHHHh
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN--DIFTKEDGEFLMRNGALPEERI-RAVET 143 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~--di~~~~~~e~~~~ig~v~Q~~~-~~i~~ 143 (222)
...+++..++. ..|.-+||+|+||+|||||||+|+. |.|..... .+.+... +....+ ...+... .++.
T Consensus 92 ~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~veqE~~g~~t-~~~~~~-l~~D~~~~dfl~- 163 (582)
T KOG0062|consen 92 GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVEQEVRGDDT-EALQSV-LESDTERLDFLA- 163 (582)
T ss_pred chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----cCcCccCchhheeccch-HHHhhh-hhccHHHHHHHH-
Confidence 44577888999 9999999999999999999999998 22221111 1111000 000000 0000000 1110
Q ss_pred cCCCCcchH-HHHHHHHHHHHhcCCcccc-cCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC-CCCC
Q 027509 144 GGCPHAAIR-EDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG-DKIP 208 (222)
Q Consensus 144 g~~~~~~~~-~~~~~~~~~L~~l~l~~~~-d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G-~d~p 208 (222)
.......+ ...+...++|..|+..... .+.+.+ |||+|.|++|||||. +|+||+||||+. +|++
T Consensus 164 -~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~ 232 (582)
T KOG0062|consen 164 -EEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV 232 (582)
T ss_pred -hhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH
Confidence 00000011 1111222378888877543 455566 999999999999999 999999996654 4443
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.56 E-value=7.7e-15 Score=138.48 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=92.2
Q ss_pred CCCCccc-ccCCCCCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC---CcEEEeeccCCCCChHHH
Q 027509 52 APHSHEP-IYSPGYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK---YSLAAVTNDIFTKEDGEF 126 (222)
Q Consensus 52 ~~~~h~~-~~~~g~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~---G~I~i~g~di~~~~~~e~ 126 (222)
++.|.+. +++--....+..++.++.|. .+|+-+||+|+|||||||+|++|.+-..|. -.++.....+... +...
T Consensus 70 ~~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps-~~~a 148 (614)
T KOG0927|consen 70 HPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPS-EKQA 148 (614)
T ss_pred CcccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCc-hHHH
Confidence 4555554 33322111234467789999 999999999999999999999999988774 2344444444321 2111
Q ss_pred hhc-cEEecCchHH------HHHhcCCCC---cc---h---------HHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHH
Q 027509 127 LMR-NGALPEERIR------AVETGGCPH---AA---I---------REDISINLGPLEELSNL-FKADLLLCE-SGGDN 182 (222)
Q Consensus 127 ~~~-ig~v~Q~~~~------~i~~g~~~~---~~---~---------~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqk 182 (222)
... +-..+++... .+.. .+.. .. . .....++.++|..++.. ...++.+.. |||++
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~-~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQ-ACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHh-hccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence 111 1122222221 1111 0110 00 0 01112334455555543 356777777 99999
Q ss_pred HHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 183 LAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 183 Qrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+|++|||+|. +|.+++|| ||.++|.
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDl 254 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDL 254 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCH
Confidence 9999999999 99999999 6777774
No 390
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.55 E-value=1.7e-14 Score=134.89 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=110.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC-CCCChHHHh-hccEEecCchH-------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFL-MRNGALPEERI------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di-~~~~~~e~~-~~ig~v~Q~~~------- 138 (222)
..+.++||+ ..|||+||.|-.|-|-+.|+.+|+|+.++. |+|.++|.++ ...+..+++ ..++|||+++.
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~ 351 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence 456789999 999999999999999999999999999876 9999999997 444555554 47999999985
Q ss_pred ----HHHHhcCCCC--------cchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cC
Q 027509 139 ----RAVETGGCPH--------AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 139 ----~~i~~g~~~~--------~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t 202 (222)
+|+.++.... ..+.+....+.+++++|.... .....+.. |||++||+-+||.|. +|+++|+. ||
T Consensus 352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPT 431 (501)
T COG3845 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT 431 (501)
T ss_pred ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCC
Confidence 4554443221 223444567778899998763 45556677 999999999999999 99999999 99
Q ss_pred CCCCC
Q 027509 203 GGDKI 207 (222)
Q Consensus 203 ~G~d~ 207 (222)
-|+|+
T Consensus 432 rGLDv 436 (501)
T COG3845 432 RGLDV 436 (501)
T ss_pred ccccH
Confidence 99985
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.3e-14 Score=133.10 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=93.0
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHH
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~ 142 (222)
|....+++..++|- +--.-++|+||||.||||||++|.|-+.|+ |...-+ .+-+||+..|...+.+.
T Consensus 596 y~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG~FdQh~~E~L~ 664 (807)
T KOG0066|consen 596 YPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIGWFDQHANEALN 664 (807)
T ss_pred CCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeeechhhhhHHhhc
Confidence 55566788889998 888899999999999999999999999998 864321 23468887777665443
Q ss_pred hcCCC--Cc--chHHHHHHHHHHHHhcCCcccccCc-CCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 143 TGGCP--HA--AIREDISINLGPLEELSNLFKADLL-LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 143 ~g~~~--~~--~~~~~~~~~~~~L~~l~l~~~~d~~-~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
.--.| ++ .+.-....+...|-.|++....... +.. ||||+-||++|-..+ .|+|+||| ||..+|+-
T Consensus 665 ~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIE 738 (807)
T KOG0066|consen 665 GEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIE 738 (807)
T ss_pred cccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchh
Confidence 21111 00 0000123455677888876544332 333 999999999997666 99999999 66667753
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.50 E-value=5.8e-14 Score=130.73 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=83.4
Q ss_pred cccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhc-cEEecCchHH----------
Q 027509 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR-NGALPEERIR---------- 139 (222)
Q Consensus 72 ~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~-ig~v~Q~~~~---------- 139 (222)
+-++..-.+|.++||+|+||-||||.+++|+|.+.|. |+-. .+. . ..++.+. -|--.|+...
T Consensus 91 L~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~---~pp-~--wdeVi~~FrGtELq~YF~~l~~g~~r~v 164 (591)
T COG1245 91 LYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE---DPP-S--WDEVIKRFRGTELQNYFKKLYEGELRAV 164 (591)
T ss_pred EecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC---CCC-C--HHHHHHHhhhhHHHHHHHHHHcCCccee
Confidence 3345555789999999999999999999999999998 7621 111 1 1222211 1111111110
Q ss_pred ----HHHh-cCCCCcchHHHH------HHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 140 ----AVET-GGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 140 ----~i~~-g~~~~~~~~~~~------~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
++.. ...-.-.+.+.. -...+.++.|++...+++-+.+ |||+.||++||.+|+ ++++|+||||+.
T Consensus 165 ~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsS 242 (591)
T COG1245 165 HKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSS 242 (591)
T ss_pred cchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcc
Confidence 1110 000001122222 2345688999999999999999 999999999999999 999999997665
No 393
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.49 E-value=1.2e-14 Score=122.95 Aligned_cols=139 Identities=62% Similarity=1.039 Sum_probs=100.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHHHHHHHH
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~~~~~L 162 (222)
.++|+||+|||||||++.|++.+.+...+.+...++....+.++.++.++++|+....+..+++++...+.+.......|
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~L 82 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEAV 82 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHHH
Confidence 68999999999999999999998877557777788776666666677888888876555577787766555554444444
Q ss_pred HhcC-CcccccCcCCCChHHHHHHHHHHHHcCCCeEEEecCCCCCCCccCCCceeecccc
Q 027509 163 EELS-NLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLL 221 (222)
Q Consensus 163 ~~l~-l~~~~d~~~~eSgGqkQrv~iArAL~~p~IlILD~t~G~d~p~K~~~~~~~~~~~ 221 (222)
..+. .....|..+.|+.|-.+...+...+++-.|+++|.+.+++.+.+.+++|..+|++
T Consensus 83 ~~l~~~~~~~D~iiIEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~ 142 (199)
T TIGR00101 83 AEMEARFPPLEMVFIESGGDNLSATFSPELADLTIFVIDVAAGDKIPRKGGPGITRSDLL 142 (199)
T ss_pred HHHHhcCCCCCEEEEECCCCCcccccchhhhCcEEEEEEcchhhhhhhhhHhHhhhccEE
Confidence 4442 1235788888844422222222333466899999999999998888899988875
No 394
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.47 E-value=1.4e-14 Score=129.07 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=97.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~ 148 (222)
+..++..|. ..+.+++|+|+|||||||||+.|++.+.....+.+...++.+.++.++.+..+. +...+..|..++
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~----pvvqi~tG~~Ch 167 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT----PAIQVNTGKGCH 167 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCC----cEEEecCCCCCc
Confidence 334556677 789999999999999999999999998877555555666666555555444332 223344555555
Q ss_pred cchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEecCCCCCCCccCCCceeecccc
Q 027509 149 AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLL 221 (222)
Q Consensus 149 ~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD~t~G~d~p~K~~~~~~~~~~~ 221 (222)
.. ...+..+++.|.. ...+.++.|+.|.. ..-...-|. ..++.|+++++|+|+|.|+|.||+.+|++
T Consensus 168 l~----a~mv~~Al~~L~~-~~~d~liIEnvGnL-vcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIV 235 (290)
T PRK10463 168 LD----AQMIADAAPRLPL-DDNGILFIENVGNL-VCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLM 235 (290)
T ss_pred Cc----HHHHHHHHHHHhh-cCCcEEEEECCCCc-cCCCccchhhceeEEEEECccccccchhccchhhcCcEE
Confidence 42 3345556666654 34578888855531 111112355 67899999999999999999999999985
No 395
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.44 E-value=3.6e-13 Score=142.18 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=42.3
Q ss_pred HHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc----CCCeEEEe-cCCCCCCCc
Q 027509 160 GPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA----DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 160 ~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~----~p~IlILD-~t~G~d~p~ 209 (222)
++|+.+++... +++.+.+ |+||+||++|||||+ +|+||||| |++|+|...
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~ 847 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD 847 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH
Confidence 57788888765 7888888 999999999999994 89999999 777887543
No 396
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.42 E-value=4.6e-13 Score=126.53 Aligned_cols=130 Identities=17% Similarity=0.069 Sum_probs=83.0
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhc-
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG- 144 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g- 144 (222)
.+.++..++|. ++|--+-|+||||||||+|+|+|.|+++-. |... + .. ..+|.|+||.|+.-.-+-
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~-----~-P~-----~~~mFYIPQRPYms~gtlR 562 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLS-----I-PR-----PNNIFYIPQRPYMSGGTLR 562 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeee-----c-CC-----CcceEeccCCCccCcCccc
Confidence 35567889999 999999999999999999999999999864 4322 1 11 235999999987221000
Q ss_pred ---CCCCcchHHHH------HHHHHHHHhcCCcc----------cccCcCCCChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 145 ---GCPHAAIREDI------SINLGPLEELSNLF----------KADLLLCESGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 145 ---~~~~~~~~~~~------~~~~~~L~~l~l~~----------~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
.+|. ...+.. +....+|..+.++. ..|..=.-|||+|||+++||.+. .|+..+|||.+.
T Consensus 563 DQIIYPd-S~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTs 641 (728)
T KOG0064|consen 563 DQIIYPD-SSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTS 641 (728)
T ss_pred ceeecCC-cHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhc
Confidence 0111 000000 11122233222221 12221111999999999999999 999999998876
Q ss_pred CCCCc
Q 027509 205 DKIPR 209 (222)
Q Consensus 205 ~d~p~ 209 (222)
-=-+.
T Consensus 642 Avsid 646 (728)
T KOG0064|consen 642 AVSID 646 (728)
T ss_pred ccccc
Confidence 54433
No 397
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.41 E-value=1.1e-12 Score=132.61 Aligned_cols=52 Identities=23% Similarity=0.350 Sum_probs=42.6
Q ss_pred HHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CC---CeEEEe-cCCCCCCCcc
Q 027509 159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY---IIYIID-VSGGDKIPRK 210 (222)
Q Consensus 159 ~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p---~IlILD-~t~G~d~p~K 210 (222)
.+.|+.+++.. .+++.+.+ |+||+||+.||++|+ +| +||||| |++|+|...+
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~ 869 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDI 869 (943)
T ss_pred HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHH
Confidence 45677788865 46888888 999999999999999 88 999999 6667775443
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.36 E-value=6.5e-13 Score=111.65 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=62.5
Q ss_pred cccCCCC-CCC-cEEEEEcCCCChHHHHHHHHH-cCcCCC-Cc-EEEeeccCCCCChHHHhhccEEecCchHHHHHhcCC
Q 027509 72 ILSRNFN-ERA-FTVGIGGPVGTGKTALMLALC-KFLRDK-YS-LAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (222)
Q Consensus 72 ~~~~~~~-~~G-eivgIiGpNGSGKSTLLk~L~-Gll~p~-G~-I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~ 146 (222)
...++|+ .+| ++++|+|||||||||||++|+ ..+.+. |. +-... ...++|+.|.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~-----------~~~~~~~~~~---------- 75 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE-----------GSSLPVFENI---------- 75 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc-----------cccCcCccEE----------
Confidence 3456777 667 589999999999999999998 222121 21 10000 0112333222
Q ss_pred CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHcCCCeEEEe-cCCCCCCCc
Q 027509 147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~~p~IlILD-~t~G~d~p~ 209 (222)
+..++.....+..+.+ |+||+|++.|++++.+|+++|+| ++.|.|...
T Consensus 76 ---------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~ 125 (200)
T cd03280 76 ---------------FADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVE 125 (200)
T ss_pred ---------------EEecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHH
Confidence 1112222233444556 99999999999886699999999 555666443
No 399
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.35 E-value=1.9e-12 Score=110.52 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=90.2
Q ss_pred CCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHH
Q 027509 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141 (222)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i 141 (222)
.|....|.+.+.|++ +.|.-.-|+|.||||||||||+|+|---.. |.|.+.|.+.+....-+-.....|+-.+=....
T Consensus 22 ~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~ 101 (291)
T KOG2355|consen 22 KYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTV 101 (291)
T ss_pred ecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccc
Confidence 355556788889999 999999999999999999999999965544 899999988765322222234555533221111
Q ss_pred HhcC-CC---CcchHH--------HHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCC-CCC
Q 027509 142 ETGG-CP---HAAIRE--------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSG-GDK 206 (222)
Q Consensus 142 ~~g~-~~---~~~~~~--------~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~-G~d 206 (222)
.+.+ .| ...... +..+-.+++..|.+. +...... |-|||+||.|++.|+ ..+|++|||-+ -+|
T Consensus 102 ~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLD 179 (291)
T KOG2355|consen 102 GIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLD 179 (291)
T ss_pred cccccccccccccHHHHHhhccCCChhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehH
Confidence 0000 00 000000 112223344544432 3445556 999999999999999 88999999544 444
No 400
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=4.3e-12 Score=128.15 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=42.5
Q ss_pred HHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-C---CCeEEEe-cCCCCCCCcc
Q 027509 158 NLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 158 ~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~---p~IlILD-~t~G~d~p~K 210 (222)
..+.|+.+++.. .+++.+.+ |+||+||+.||++|+ + |+||||| |++|+|...+
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~ 867 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDI 867 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHH
Confidence 345677788765 46888888 999999999999999 5 8999999 6678876543
No 401
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6.3e-12 Score=118.38 Aligned_cols=119 Identities=14% Similarity=0.092 Sum_probs=86.4
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhc----
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG---- 144 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g---- 144 (222)
....++++ +.-.-++++|+||+||||+++++.+-+.|+ |.+.+.. +.+|+|.+|.-...+...
T Consensus 379 ~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri~~f~Qhhvd~l~~~v~~v 447 (582)
T KOG0062|consen 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRIKYFAQHHVDFLDKNVNAV 447 (582)
T ss_pred hhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cceecchhHhhhhHHHHHhHHH
Confidence 55667777 778889999999999999999999999987 8666443 356888888665332211
Q ss_pred -----CCCCcchHHHHHHHHHHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 145 -----GCPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 145 -----~~~~~~~~~~~~~~~~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
.+|.. .+ +...+.|..|++... ....+.. |||||-||+||.... +|.+||||||+.
T Consensus 448 d~~~~~~pG~-~~---ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN 511 (582)
T KOG0062|consen 448 DFMEKSFPGK-TE---EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN 511 (582)
T ss_pred HHHHHhCCCC-CH---HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCc
Confidence 11211 12 244557889998753 3333566 999999999998888 999999996654
No 402
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.26 E-value=7e-12 Score=116.00 Aligned_cols=126 Identities=20% Similarity=0.164 Sum_probs=85.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc--------CCC-CcEEEeeccCCCCChHHHhhccEEecCchH
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--------RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll--------~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
...+.++|+. ++|++++|+|++||||||||++|+|.. +|+ |.|.+-.+.+. +++|-+.-
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~E 464 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYE 464 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCcccc
Confidence 3456789999 999999999999999999999999964 455 66655433321 11121110
Q ss_pred HHHHhcC---CCCc-chHHHHHHHHHHHHhcCCcc--cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCC
Q 027509 139 RAVETGG---CPHA-AIREDISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKI 207 (222)
Q Consensus 139 ~~i~~g~---~~~~-~~~~~~~~~~~~L~~l~l~~--~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~ 207 (222)
. .++. ..+. ....|...+.++|.++++.+ ...+.+.+ |.||+.|+.||++++ .|.+++.|+....-+
T Consensus 465 p--~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD 539 (593)
T COG2401 465 P--EFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539 (593)
T ss_pred c--ccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcC
Confidence 0 0000 0000 01113455677888888765 45667777 999999999999999 999999998765443
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.25 E-value=6e-12 Score=128.67 Aligned_cols=134 Identities=19% Similarity=0.150 Sum_probs=101.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC----CCcEEEeeccCCCCChHHHhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p----~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------ 138 (222)
.++++.++. ++|+++-++||+||||||||++|+|-+.. .|+|.++|.+...... ++.++|++|.-.
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeE
Confidence 466788888 99999999999999999999999997764 2789999998754322 567899998765
Q ss_pred --HHHHhcCCCC--------cchHHHH-HHHHHHHHhcCCcccccCcCCC------ChHHHHHHHHHHHHc-CCCeEEEe
Q 027509 139 --RAVETGGCPH--------AAIREDI-SINLGPLEELSNLFKADLLLCE------SGGDNLAANFSRELA-DYIIYIID 200 (222)
Q Consensus 139 --~~i~~g~~~~--------~~~~~~~-~~~~~~L~~l~l~~~~d~~~~e------SgGqkQrv~iArAL~-~p~IlILD 200 (222)
+-+.+...+. ...++.. +....+++.+++....|.++.. |||||+||.++-+++ +++++.+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 2222221111 1111211 2566789999998877666543 999999999999999 99999999
Q ss_pred -cCCCCC
Q 027509 201 -VSGGDK 206 (222)
Q Consensus 201 -~t~G~d 206 (222)
.++|+|
T Consensus 286 e~t~GLD 292 (1391)
T KOG0065|consen 286 EITRGLD 292 (1391)
T ss_pred ccccccc
Confidence 778887
No 404
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.24 E-value=5.2e-12 Score=97.26 Aligned_cols=62 Identities=26% Similarity=0.174 Sum_probs=52.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCc
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~ 136 (222)
.++..++|+ ++|++++|+||||||||||+++|+ +|++.+++.++...+..+..+.++++||+
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~ 65 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL 65 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh
Confidence 467788999 899999999999999999999987 78899999998776655566667788776
No 405
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.20 E-value=1.6e-11 Score=104.85 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=29.4
Q ss_pred ccCcCCC-ChHHHHHHHHHHH----Hc-CCCeEEEe-cCCCCCCCc
Q 027509 171 ADLLLCE-SGGDNLAANFSRE----LA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 171 ~d~~~~e-SgGqkQrv~iArA----L~-~p~IlILD-~t~G~d~p~ 209 (222)
.+..+.+ |+||||++.++++ ++ +|+++|+| |+.|+|...
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~ 165 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTN 165 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHH
Confidence 3556667 9999999887644 46 99999999 556777543
No 406
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.20 E-value=6.5e-11 Score=98.39 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHH----c-CCCeEEEe-cCCCCCCCc
Q 027509 178 SGGDNLAANFSREL----A-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 178 SgGqkQrv~iArAL----~-~p~IlILD-~t~G~d~p~ 209 (222)
|+||+||++|||+| + +|+++|+| |+.++|...
T Consensus 96 S~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~ 133 (178)
T cd03239 96 SGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTN 133 (178)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHH
Confidence 99999999999998 3 89999999 555777543
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.17 E-value=1.8e-11 Score=105.19 Aligned_cols=95 Identities=17% Similarity=0.042 Sum_probs=66.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccE-EecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNG-ALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig-~v~Q~~~~~i~~g~~~ 147 (222)
.+.++++++ .++++++|+||||+||||||++|+-. .+..++| |||.+.. .++
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~---~~~--- 71 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSA---DIP--- 71 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccE---EEe---
Confidence 456888998 68999999999999999999999821 1233444 5555421 011
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHH--c-CCCeEEEecC
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSREL--A-DYIIYIIDVS 202 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL--~-~p~IlILD~t 202 (222)
.+.+++..+++.+ ..... |.|+++++.+++++ + +|+++||||+
T Consensus 72 ---------~~~~il~~~~l~d---~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp 118 (222)
T cd03285 72 ---------IVDCILARVGASD---SQLKGVSTFMAEMLETAAILKSATENSLIIIDEL 118 (222)
T ss_pred ---------ccceeEeeecccc---chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 1112344555442 22344 99999999999999 7 9999999976
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3e-11 Score=112.69 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=80.9
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcC---cCCCCcEEEeeccCCCCChHHH-------hhccEEecCchH-
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF---LRDKYSLAAVTNDIFTKEDGEF-------LMRNGALPEERI- 138 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gl---l~p~G~I~i~g~di~~~~~~e~-------~~~ig~v~Q~~~- 138 (222)
++.+.++. -.|.-+||+||||-||||||+.|+.- ++|.=.+++..+.+...+...+ .++..++-.+..
T Consensus 279 LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L 358 (807)
T KOG0066|consen 279 LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKL 358 (807)
T ss_pred eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455666 67999999999999999999999872 3344556666665532211111 112222211111
Q ss_pred -HHHHhcCCC---Cc----------chHHHHHHHHHHHHhcCCcccccCcCCC--ChHHHHHHHHHHHHc-CCCeEEEec
Q 027509 139 -RAVETGGCP---HA----------AIREDISINLGPLEELSNLFKADLLLCE--SGGDNLAANFSRELA-DYIIYIIDV 201 (222)
Q Consensus 139 -~~i~~g~~~---~~----------~~~~~~~~~~~~L~~l~l~~~~d~~~~e--SgGqkQrv~iArAL~-~p~IlILD~ 201 (222)
..++-|-.. .+ .......++..+|.-|+........+.+ |||+|.||+|||||. .|.+++||+
T Consensus 359 ~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDE 438 (807)
T KOG0066|consen 359 MSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDE 438 (807)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecC
Confidence 111111000 00 0000113455677778776555444555 999999999999999 999999995
Q ss_pred CC-CCCC
Q 027509 202 SG-GDKI 207 (222)
Q Consensus 202 t~-G~d~ 207 (222)
|+ -+|.
T Consensus 439 PTNHLDL 445 (807)
T KOG0066|consen 439 PTNHLDL 445 (807)
T ss_pred Ccccccc
Confidence 54 4443
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=4.2e-11 Score=101.74 Aligned_cols=101 Identities=19% Similarity=0.119 Sum_probs=65.4
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEE-ecCchHHHHHhcC
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGA-LPEERIRAVETGG 145 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~-v~Q~~~~~i~~g~ 145 (222)
+..+.++++|+ ..|++++|+||||+||||||++|+++.- +.++|+ +|-. ...+.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~--------------------la~~G~~vpa~---~~~l~- 70 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI--------------------MAQIGCFVPAE---YATLP- 70 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH--------------------HHHcCCCcchh---hcCcc-
Confidence 34567889999 7899999999999999999999998741 122222 1111 00000
Q ss_pred CCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 146 CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
...+++..++......+..++ |.|++|+. .+.+++ +|+++||||++.
T Consensus 71 -----------~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~ 119 (204)
T cd03282 71 -----------IFNRLLSRLSNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGR 119 (204)
T ss_pred -----------ChhheeEecCCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccC
Confidence 111133444444445555666 88888764 445677 999999997643
No 410
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.12 E-value=1.2e-10 Score=103.14 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=45.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC-hHHHhhccEEecCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEE 136 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~-~~e~~~~ig~v~Q~ 136 (222)
.-++|+||||||||||+++|+|++.|+ |+|.++|.++...+ ..++...++++||.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccc
Confidence 678999999999999999999999998 99999999886432 34555566777775
No 411
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.12 E-value=7.3e-11 Score=109.59 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=73.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC--CcEEEeeccCCCCChHHHhhccEEecCchH-------HHHHhcCCCCcc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHAA 150 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~--G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~i~~g~~~~~~ 150 (222)
..|++..+|+||.|||||+++++|.++|+ ++|-... ++|-||... ..+...-.. .
T Consensus 366 dSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln--------------VSykpqkispK~~~tvR~ll~~kIr--~ 429 (592)
T KOG0063|consen 366 DSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN--------------VSYKPQKISPKREGTVRQLLHTKIR--D 429 (592)
T ss_pred CceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc--------------eeccccccCccccchHHHHHHHHhH--h
Confidence 46899999999999999999999999997 3443322 333333211 111110000 0
Q ss_pred hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 151 IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 151 ~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
...+-+.+...++-|.++...|+-+.. |||++||+++|..|- .++||++|||.-
T Consensus 430 ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 430 AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 000113344566777777777887888 999999999998888 899999998764
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.03 E-value=2.1e-10 Score=96.91 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=29.5
Q ss_pred CCcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 70 ~~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
++.+++++.. |++++|+||||||||||||+|++...
T Consensus 15 ~v~n~i~l~~-g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 15 RVANDIDMEK-KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred eecceEEEcC-CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 3456666664 69999999999999999999998653
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.02 E-value=1.7e-10 Score=96.98 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=26.7
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
..+++ .+|++++|+|||||||||||++|++..
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 34555 568999999999999999999999643
No 414
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.98 E-value=7.4e-10 Score=90.21 Aligned_cols=87 Identities=23% Similarity=0.320 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEE-ecCchHHHHHhcCCCCcchHHHHHHH
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA-LPEERIRAVETGGCPHAAIREDISIN 158 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~-v~Q~~~~~i~~g~~~~~~~~~~~~~~ 158 (222)
+.++.|+|||||||||+|++|+-.+-.. +.+.. ..++ +.++ +++.. ..+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~----------~~g~~~~~~~-----------~~~------- 71 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV----------KAGCIVAAVS-----------AEL------- 71 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc----------cCCCcceeeE-----------EEE-------
Confidence 4799999999999999999988766543 43332 0000 1111 11110 000
Q ss_pred HHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-----CCCeEEEec-CCCCCCC
Q 027509 159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELA-----DYIIYIIDV-SGGDKIP 208 (222)
Q Consensus 159 ~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-----~p~IlILD~-t~G~d~p 208 (222)
+...... |+||+||++||++|+ +|+++|||| ..|.|..
T Consensus 72 --------i~~~~~l----S~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~ 115 (162)
T cd03227 72 --------IFTRLQL----SGGEKELSALALILALASLKPRPLYILDEIDRGLDPR 115 (162)
T ss_pred --------ehheeec----cccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHH
Confidence 0000012 999999999999997 469999995 5555544
No 415
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.95 E-value=4.9e-10 Score=105.77 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=52.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C-cEEEeeccCCCCChHHHhhccEEecCchH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G-~I~i~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
.++.+++++ ++||+++|+|||||||||||+ +++..|+ | +|.++|.++...+..++. .+-+|||...
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~-~LR~VFQ~fn 88 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAME-TLDEIFDGFN 88 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHH-HHHHHHHhhh
Confidence 356788999 999999999999999999999 6777776 6 799999999765443332 2227788765
No 416
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.94 E-value=3.8e-09 Score=92.52 Aligned_cols=128 Identities=16% Similarity=0.069 Sum_probs=71.6
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcE--EEeeccCCCCChHHHhhcc-----EEecCchH-HHHHh
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSL--AAVTNDIFTKEDGEFLMRN-----GALPEERI-RAVET 143 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I--~i~g~di~~~~~~e~~~~i-----g~v~Q~~~-~~i~~ 143 (222)
+..+. .+|+.++|+||+|+|||||++.|+..+... +.+ ++....-...+..++.+.+ ..-++++. ..+..
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~ 87 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQV 87 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHH
Confidence 44445 789999999999999999999999988764 322 2221111123455555544 22122221 00000
Q ss_pred -------------cCCCCcchHHHHHHHHHHHHhcCCcccccCcCCCChHH--------HHHHHHHHHHc-CCCeEEEec
Q 027509 144 -------------GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-DYIIYIIDV 201 (222)
Q Consensus 144 -------------g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGq--------kQrv~iArAL~-~p~IlILD~ 201 (222)
-+..-.-+-.++.+...+..++....... + |+|+ +||+++||++. +++|.+| .
T Consensus 88 ~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~--~--sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l-~ 162 (249)
T cd01128 88 AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKI--L--SGGVDANALHKPKRFFGAARNIEEGGSLTII-A 162 (249)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCC--C--CCCcChhhhhhhHHHHHHhcCCCCCCceEEe-e
Confidence 00000000111222222333333222111 1 9999 99999999998 9999999 7
Q ss_pred CCCCC
Q 027509 202 SGGDK 206 (222)
Q Consensus 202 t~G~d 206 (222)
|...|
T Consensus 163 T~~~d 167 (249)
T cd01128 163 TALVD 167 (249)
T ss_pred eheec
Confidence 77666
No 417
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=7e-10 Score=97.83 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHc-----CCCeEEEe-cCCCCCCC
Q 027509 178 SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 178 SgGqkQrv~iArAL~-----~p~IlILD-~t~G~d~p 208 (222)
|+||+||++||++++ +|+++||| |+.++|..
T Consensus 172 S~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~ 208 (276)
T cd03241 172 SGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGE 208 (276)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHH
Confidence 999999999998643 89999999 66677754
No 418
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.90 E-value=2.4e-09 Score=90.27 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHc-CCCeEEEecCC
Q 027509 178 SGGDNLAANFSRELA-DYIIYIIDVSG 203 (222)
Q Consensus 178 SgGqkQrv~iArAL~-~p~IlILD~t~ 203 (222)
.+-+++++.|||+++ +|+++++|||+
T Consensus 154 ~~v~~~f~~ia~~l~~~p~~~~ldEp~ 180 (215)
T PTZ00132 154 YNFEKPFLWLARRLTNDPNLVFVGAPA 180 (215)
T ss_pred CCHHHHHHHHHHHHhhcccceecCCcc
Confidence 344888999999999 99999999665
No 419
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=2.8e-09 Score=93.68 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHH---------c-CCCeEEEe-cCCCCCCCc
Q 027509 178 SGGDNLAANFSREL---------A-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 178 SgGqkQrv~iArAL---------~-~p~IlILD-~t~G~d~p~ 209 (222)
|.||+|++.||++| . +|+++||| |+.++|..+
T Consensus 185 S~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~ 227 (270)
T cd03242 185 SQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGR 227 (270)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHH
Confidence 99999999999987 4 99999999 667777554
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.87 E-value=3.9e-09 Score=90.06 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=60.0
Q ss_pred CcccCCCCCC-CcEEEEEcCCCChHHHHHHHHHc--CcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCK--FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 71 ~~~~~~~~~~-GeivgIiGpNGSGKSTLLk~L~G--ll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
+-|++.+... +.++.|+||||+|||||||.|+. ++...|...... ...++|..|.... ++ .
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-----------~~~~~~~d~i~~~---l~--~ 81 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-----------SATIGLVDKIFTR---MS--S 81 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-----------CcEEeeeeeeeee---eC--C
Confidence 4456666643 48999999999999999999984 343236533211 1235665553210 00 0
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEecC-CCCCC
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVS-GGDKI 207 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD~t-~G~d~ 207 (222)
... ..+.+ ++-.-+.||++++++++ ++.++||||+ .|.|.
T Consensus 82 ~~s----------i~~~~----------S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 82 RES----------VSSGQ----------SAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred ccC----------hhhcc----------chHHHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 000 00100 11234678899999999 9999999965 45543
No 421
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.81 E-value=1.2e-08 Score=108.43 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-C---CCeEEEe-cCCCCCC
Q 027509 157 INLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKI 207 (222)
Q Consensus 157 ~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~---p~IlILD-~t~G~d~ 207 (222)
..++.|.++++.+ .+.+...+ ||||.||+-||..|. . +.+|||| ||+|+..
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~ 1735 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDN 1735 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCH
Confidence 3455788888875 57788888 999999999999998 5 6899999 7777764
No 422
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.80 E-value=4.5e-09 Score=87.66 Aligned_cols=107 Identities=19% Similarity=0.255 Sum_probs=61.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCCh--HHHhhccEEecCchHHHHHhcCCCCcchHHHHHHHHH
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED--GEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~--~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~~~~ 160 (222)
++||+||+|||||||+++|++++ ..+.+.+...|...... .+......+.++ .+.. + +.....+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l-~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~----------~~~~-~--~~~~~~~ 66 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL-GNPKVVIISQDSYYKDLSHEELEERKNNNYD----------HPDA-F--DFDLLIS 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCCCeEEEEecccccccccccHHHhccCCCC----------CCCc-c--cHHHHHH
Confidence 58999999999999999999988 33566666665432111 111111111111 1111 1 1223334
Q ss_pred HHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCC
Q 027509 161 PLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDK 206 (222)
Q Consensus 161 ~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d 206 (222)
.|..+......+..... |.|++++..+ .+ .++++|+|.+....
T Consensus 67 ~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~ 111 (198)
T cd02023 67 HLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALY 111 (198)
T ss_pred HHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhcc
Confidence 55555444444555555 8888776554 45 88999999665543
No 423
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.75 E-value=1.3e-08 Score=100.61 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=38.7
Q ss_pred HHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CC---CeEEEe-cCCCCC
Q 027509 158 NLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY---IIYIID-VSGGDK 206 (222)
Q Consensus 158 ~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p---~IlILD-~t~G~d 206 (222)
.++.|.++++.. .+-+..-+ ||||.||+-||..|. .. .+|||| ||+|+-
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH 857 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH 857 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCC
Confidence 344677778765 46677777 999999999999998 44 799999 777764
No 424
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.73 E-value=1.7e-08 Score=83.71 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=43.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHH
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i 141 (222)
|++++|+||||||||||+++|++.+.+ .+.+.+..+...........+++++|++...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYITRPASAGSENHIALSEQEFFTRA 60 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECCCccchhHHhheeEcHHHHHHHH
Confidence 789999999999999999999998765 36666655543322333456888888866443
No 425
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.70 E-value=9.3e-09 Score=85.53 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=52.2
Q ss_pred EEEEEcCCCChHHHHHHHHHc-CcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHHHHHH
Q 027509 83 TVGIGGPVGTGKTALMLALCK-FLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~G-ll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~~~~ 160 (222)
++.|+||||+|||||||.|+- .+-.. |..... + ...++++. +
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a----------~-~~~~~~~d-------------------------~ 44 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA----------E-SAELPVFD-------------------------R 44 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee----------h-heEecccc-------------------------e
Confidence 468999999999999999984 22222 321100 0 01122211 1
Q ss_pred HHHhcCCcccccCcCCC-ChHHHHHHHHHHHHcCCCeEEEecC-CCCCCC
Q 027509 161 PLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVS-GGDKIP 208 (222)
Q Consensus 161 ~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~~p~IlILD~t-~G~d~p 208 (222)
.+..++.....+....+ |++++|...+++.+-+|+++|+||+ .|.|..
T Consensus 45 il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~ 94 (185)
T smart00534 45 IFTRIGASDSLAQGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTY 94 (185)
T ss_pred EEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHH
Confidence 22334444445555666 8888775555543229999999955 555543
No 426
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.70 E-value=3.7e-09 Score=85.41 Aligned_cols=136 Identities=20% Similarity=0.192 Sum_probs=76.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh-HHH-hhccE--EecCchHHHHHhcCCC-CcchHHHHH
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEF-LMRNG--ALPEERIRAVETGGCP-HAAIREDIS 156 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~-~e~-~~~ig--~v~Q~~~~~i~~g~~~-~~~~~~~~~ 156 (222)
+++++|++|||||||++.++..+.+. .++.+...|+..... ..+ ..++. -+.+.+ .+.+...+ .........
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 78 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDP--GVFIRSLATRGFLGGLSR 78 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCC--CceEEEcCCcCcccccch
Confidence 37899999999999999999988887 788888877633211 000 00000 000000 00000000 000000111
Q ss_pred HHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHcCCCeEEEecCCCCCCCccCCCceeecccc
Q 027509 157 INLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLL 221 (222)
Q Consensus 157 ~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~~p~IlILD~t~G~d~p~K~~~~~~~~~~~ 221 (222)
...+.++.+.. ...|..+.++.|-.+....+.+.++-.|++.-|..++..|.+..+||.++|++
T Consensus 79 ~~~~~~~~~~~-~~~D~iiIDtaG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~ 142 (148)
T cd03114 79 ATPEVIRVLDA-AGFDVIIVETVGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIV 142 (148)
T ss_pred hHHHHHHHHHh-cCCCEEEEECCccChhhhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEE
Confidence 12223333322 24566666644434444333344488899999999999999999999999986
No 427
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.68 E-value=1.5e-08 Score=94.41 Aligned_cols=124 Identities=13% Similarity=0.098 Sum_probs=74.9
Q ss_pred cCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhh-----c-cEEecCchH-HHHHhcC
Q 027509 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-----R-NGALPEERI-RAVETGG 145 (222)
Q Consensus 74 ~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~-----~-ig~v~Q~~~-~~i~~g~ 145 (222)
++..-.+|++.|++|-||-||||-+++++|-++|. |+-. + +. ...++.. . -+| |+... .++....
T Consensus 93 rlp~prpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~--pp---~w~~il~~frgselq~y-ftk~le~~lk~~~ 165 (592)
T KOG0063|consen 93 RLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-N--PP---DWQEILTYFRGSELQNY-FTKILEDNLKAII 165 (592)
T ss_pred cCCCCCcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-C--Cc---chHHHhhhhhhHHHhhh-hhhhccccccCcC
Confidence 33333679999999999999999999999999987 6521 0 00 0111110 0 001 11111 0000000
Q ss_pred -------CCC---cch------HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 146 -------CPH---AAI------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 146 -------~~~---~~~------~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
.|. ..+ +.+.....++++.+.+...+++-+.. |||+.||.+||.+.+ ..+++++||+++
T Consensus 166 kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 166 KPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 000 000 11112233456666666667777777 999999999999999 999999997665
No 428
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.67 E-value=6.3e-08 Score=87.60 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=45.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC------hHHHhhccEEecCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE------DGEFLMRNGALPEE 136 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~------~~e~~~~ig~v~Q~ 136 (222)
.++++++|+|||||||||++..|++.+.+. ++|.+.+.|..... ....+.++.+++|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~ 176 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQK 176 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeC
Confidence 569999999999999999999999999988 79999998874321 11223457777663
No 429
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.62 E-value=3.6e-08 Score=82.02 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=35.5
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEee
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g 115 (222)
+.+. +.|++++|+||||||||||+++|+++++++ |.|.+.+
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 3344 779999999999999999999999999988 7777755
No 430
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.62 E-value=2.7e-08 Score=99.36 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=58.3
Q ss_pred cCCCCCCCcEEEEEcCCCChHHHHHHHHHcC-cCCC-Cc-EEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcc
Q 027509 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKF-LRDK-YS-LAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA 150 (222)
Q Consensus 74 ~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gl-l~p~-G~-I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~ 150 (222)
++.+....++++|+||||+||||||++|+++ +.+. |. |-... ...++|+.|.
T Consensus 315 di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~-----------~~~~~~~d~i-------------- 369 (771)
T TIGR01069 315 TLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE-----------HSEIPYFEEI-------------- 369 (771)
T ss_pred eeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc-----------cccccchhhe--------------
Confidence 3333344489999999999999999999997 3333 31 11100 0112221111
Q ss_pred hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHcCCCeEEEecCC-CCCC
Q 027509 151 IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVSG-GDKI 207 (222)
Q Consensus 151 ~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~~p~IlILD~t~-G~d~ 207 (222)
+..++........+.+ |++|++++.|++++.++.++||||++ |.|.
T Consensus 370 -----------~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~ 417 (771)
T TIGR01069 370 -----------FADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDP 417 (771)
T ss_pred -----------eeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCH
Confidence 0011111112233455 99999999998776699999999655 5554
No 431
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.60 E-value=5.8e-08 Score=83.04 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=30.0
Q ss_pred CcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 71 ~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
..|+++++.+.++++|+||||||||||||+|+++.
T Consensus 20 v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPERQILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 55778888555999999999999999999998743
No 432
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.59 E-value=5.1e-07 Score=67.85 Aligned_cols=30 Identities=37% Similarity=0.368 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY 109 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~G 109 (222)
.+..+.|+||+|+|||||++.|+..+...+
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 367899999999999999999999888763
No 433
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.57 E-value=3.3e-08 Score=89.96 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=81.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC-------hHHHhhccEEecCchH-HHHHhcCCCCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------DGEFLMRNGALPEERI-RAVETGGCPHA 149 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~-------~~e~~~~ig~v~Q~~~-~~i~~g~~~~~ 149 (222)
.+..+++|+|++|||||||+..|...+... .+|.+...|+.... +..+...+ ..++. ....++.+++.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~---~~~~~~~~r~~~~~~~l 130 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERL---SRHPNAFIRPSPSSGTL 130 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhh---cCCCCeEEEecCCcccc
Confidence 567799999999999999999999998876 57888888875431 11111111 11111 00112223333
Q ss_pred chHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHcCCCeEEEecCCCCCCCc-cCCCceeeccc
Q 027509 150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR-KGGPGITQADL 220 (222)
Q Consensus 150 ~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~~p~IlILD~t~G~d~p~-K~~~~~~~~~~ 220 (222)
. .....+.++++.+. ....|..+.++.|-+|-...+..++|--+++++++.|++++. |.+. +..+||
T Consensus 131 ~--~~a~~~~~~~~~~~-~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi-~E~aDI 198 (332)
T PRK09435 131 G--GVARKTRETMLLCE-AAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGI-MELADL 198 (332)
T ss_pred c--chHHHHHHHHHHHh-ccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhh-hhhhhe
Confidence 2 12234444555544 234677777855555654444444588889999999999755 6543 333443
No 434
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.57 E-value=5.3e-08 Score=82.10 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
++|++++|+||||||||||+++|++++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999999876
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.56 E-value=7.9e-08 Score=91.37 Aligned_cols=45 Identities=27% Similarity=0.270 Sum_probs=34.5
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C--cEEEeeccC
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDI 118 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G--~I~i~g~di 118 (222)
..++. ++|.+++|+|||||||||++..|++.+... | +|.+...|.
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 34444 678999999999999999999999988654 4 455555443
No 436
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.53 E-value=1e-07 Score=79.10 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF 119 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~ 119 (222)
+|++++|+|+||||||||+++|++++.+ +.+++.++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccC
Confidence 5899999999999999999999999876 567776663
No 437
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.51 E-value=9.5e-08 Score=82.31 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=36.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHc-CcCCC-CcEE
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCK-FLRDK-YSLA 112 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~G-ll~p~-G~I~ 112 (222)
...++++|. .+|++++|+||||+||||||++|++ .+.+. |...
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v 64 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFV 64 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 456788888 8899999999999999999999999 55555 7544
No 438
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.51 E-value=7.1e-08 Score=81.51 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH
Q 027509 80 RAFTVGIGGPVGTGKTALMLALC 102 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~ 102 (222)
...+..|+||||||||||+.+|.
T Consensus 23 ~~~~~~i~G~NGsGKS~ileAi~ 45 (220)
T PF02463_consen 23 SPGLNVIVGPNGSGKSNILEAIE 45 (220)
T ss_dssp TSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHH
Confidence 46799999999999999999994
No 439
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.49 E-value=3.9e-07 Score=71.53 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=29.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di 118 (222)
++.|.||||+|||||++.+++...+. +.|.+...+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 47899999999999999999988766 6777666543
No 440
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.47 E-value=1.4e-07 Score=65.86 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=29.4
Q ss_pred cCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 74 ~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
.+.|.+.|.++.|+|||||||||||.+|.=++-+.
T Consensus 16 ~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 16 TIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred EEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 45556678899999999999999999999877654
No 441
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.47 E-value=1.5e-07 Score=88.69 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=48.8
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEee---ccCCCCChHH----HhhccEEecCch
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT---NDIFTKEDGE----FLMRNGALPEER 137 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g---~di~~~~~~e----~~~~ig~v~Q~~ 137 (222)
.+..++ . .+|++++|+||+||||||||++|+++.+|+ |.|.+.| .++....... +++.+++++|..
T Consensus 155 aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 155 VIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred Eeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence 343343 5 899999999999999999999999999998 8888764 4443222211 234689999854
No 442
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.45 E-value=2e-07 Score=78.17 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=44.8
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC--CcEEEeeccCCCCChHHHhhccEEecCchH
Q 027509 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 77 ~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~--G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
+..++.+++|+|+||||||||+++|.+.+.+. |.+.+++.++. ..+...++|.+|+..
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~----~~~~~~~~~~~~~~~ 79 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR----HGLCSDLGFSDADRK 79 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH----hhhhhcCCcCcccHH
Confidence 33679999999999999999999999988765 57888776552 122235788888765
No 443
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.45 E-value=3.4e-07 Score=74.96 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEE
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAA 113 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i 113 (222)
|++++|+||||||||||+++|+..+...|.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEE
Confidence 578999999999999999999998765555544
No 444
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.44 E-value=2.4e-07 Score=79.46 Aligned_cols=35 Identities=37% Similarity=0.488 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEE
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i 113 (222)
.+..++||+||||||||||+++|++++++. |.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v 66 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAI 66 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceE
Confidence 568899999999999999999999999987 77544
No 445
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.43 E-value=1.9e-07 Score=77.94 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999875
No 446
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.40 E-value=3.1e-07 Score=82.19 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=37.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC--CC-CcEEEeeccCCCCCh
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKED 123 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~--p~-G~I~i~g~di~~~~~ 123 (222)
+.-.++||.||||||||||+++|.+++. ++ |.|.+.+.|-+..+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~ 107 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPN 107 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccH
Confidence 3458999999999999999999999987 55 888888877665443
No 447
>PRK13695 putative NTPase; Provisional
Probab=98.39 E-value=1.4e-07 Score=77.38 Aligned_cols=102 Identities=23% Similarity=0.230 Sum_probs=55.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHHHHHHHH
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~~~~~L 162 (222)
.++|+|+||||||||++.|.+.+.+.| +.+.+.-. .+..+..+..++...+. ..+. ...+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G-~~~~g~~~--~~~~~~~~~~~~~~~~~----~~~~-------------~~~l 61 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEG-YKVGGFYT--EEVREGGKRIGFKIIDL----DTGE-------------EGIL 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEc--HHHHhcCCccceEEEEc----CCCC-------------eEEc
Confidence 479999999999999999988766544 22222110 00000111222221110 0000 0011
Q ss_pred HhcCC-c-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 163 EELSN-L-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 163 ~~l~l-~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
..++. . ....+.+.. |++++.++.+++..+ +|+++|+||++.
T Consensus 62 ~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~ 107 (174)
T PRK13695 62 ARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGK 107 (174)
T ss_pred cccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCc
Confidence 11111 0 111223334 999999999998888 999999998654
No 448
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.38 E-value=1.5e-06 Score=81.58 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=37.9
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
+..|. .+|+.++|+|+||+|||||+++|++..+++ |.|.+.|..
T Consensus 148 D~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer 193 (432)
T PRK06793 148 DSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER 193 (432)
T ss_pred eccceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC
Confidence 33577 999999999999999999999999999987 777766654
No 449
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.35 E-value=1.1e-06 Score=82.80 Aligned_cols=102 Identities=14% Similarity=0.187 Sum_probs=63.0
Q ss_pred CCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-C-CcEEEee---ccCCCCChHHHh---hccEEe-----cCchHH--
Q 027509 76 NFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVT---NDIFTKEDGEFL---MRNGAL-----PEERIR-- 139 (222)
Q Consensus 76 ~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-~-G~I~i~g---~di~~~~~~e~~---~~ig~v-----~Q~~~~-- 139 (222)
.|. .+|+.++|+|+||||||||+++|+++.++ + +.|.+.| .++......+++ .+++++ +|.+..
T Consensus 158 ~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~rl 237 (442)
T PRK06315 158 MLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRL 237 (442)
T ss_pred cccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHHHh
Confidence 477 99999999999999999999999998854 4 5666644 444222122221 235666 898862
Q ss_pred -----------HHHhcCCCCcchHHHHHHHHHHHHhcCCc-----ccccCcCCC
Q 027509 140 -----------AVETGGCPHAAIREDISINLGPLEELSNL-----FKADLLLCE 177 (222)
Q Consensus 140 -----------~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-----~~~d~~~~e 177 (222)
.+..-+..-....+...++.++++++++. .....++.+
T Consensus 238 np~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~ 291 (442)
T PRK06315 238 NAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSV 291 (442)
T ss_pred hHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCch
Confidence 11111111112244567788888888873 234455544
No 450
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.35 E-value=2e-07 Score=93.42 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=64.3
Q ss_pred CcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccE-EecCchHHHHHhcCCCCc
Q 027509 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNG-ALPEERIRAVETGGCPHA 149 (222)
Q Consensus 71 ~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig-~v~Q~~~~~i~~g~~~~~ 149 (222)
+-+++.+.....++.|+|||++||||+||.++...- ..++| +||-... ..++.+.
T Consensus 317 Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~--------------------maq~G~~vpa~~~--~~i~~~~-- 372 (782)
T PRK00409 317 VPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL--------------------MAKSGLPIPANEP--SEIPVFK-- 372 (782)
T ss_pred ECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHH--------------------HHHhCCCcccCCC--ccccccc--
Confidence 335566666688999999999999999999965321 11122 2222100 0001000
Q ss_pred chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHcCCCeEEEecCC-CCCC
Q 027509 150 AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVSG-GDKI 207 (222)
Q Consensus 150 ~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~~p~IlILD~t~-G~d~ 207 (222)
..+..++........+++ |++|+|++.|++++-+|.++||||++ |.|.
T Consensus 373 ----------~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp 422 (782)
T PRK00409 373 ----------EIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDP 422 (782)
T ss_pred ----------eEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCH
Confidence 011233333444556667 99999999999988889999999766 5553
No 451
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=6.6e-07 Score=89.03 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=37.2
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C--cEEEeeccC
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDI 118 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G--~I~i~g~di 118 (222)
+...++. ++|++++|+||||+||||++..|++.+... | +|.+...|.
T Consensus 175 l~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt 225 (767)
T PRK14723 175 LRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS 225 (767)
T ss_pred ccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc
Confidence 3345555 568999999999999999999999988644 5 677777664
No 452
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.32 E-value=3.6e-07 Score=85.84 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=46.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEE---eeccCCCCChHH------HhhccEEecCchH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGE------FLMRNGALPEERI 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i---~g~di~~~~~~e------~~~~ig~v~Q~~~ 138 (222)
.+++.+ |. .+|++++|+|+||||||||+++|+++..++ ..+.. .+.++....... .++.+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 355667 88 999999999999999999999999999887 43333 333332111111 1335788888753
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.31 E-value=1.6e-06 Score=74.79 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCChHHHH-HHHHHcCcCCC-CcEEEe
Q 027509 79 ERAFTVGIGGPVGTGKTAL-MLALCKFLRDK-YSLAAV 114 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTL-Lk~L~Gll~p~-G~I~i~ 114 (222)
++|+++.|+|+|||||||| ++++++++++. ..+++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 6799999999999999999 78999887665 444444
No 454
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.31 E-value=7.1e-07 Score=79.07 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=36.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCch
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~ 137 (222)
++||+|+||||||||+++|++++++.+...+...++......+ ++..|+.++++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~-r~~~g~~~~~p 54 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKG-RKETGITALDP 54 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHH-HHHhhcccccc
Confidence 5899999999999999999999998743223333443333322 34456555543
No 455
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.27 E-value=9.7e-07 Score=83.16 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=48.6
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC--------CChHHHhhccEEecC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--------KEDGEFLMRNGALPE 135 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~--------~~~~e~~~~ig~v~Q 135 (222)
+++.+ |. .+|++++|+|+||+|||||+++|+++..++ |.|.+.|..-.. .+...+++.+.++.+
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 45556 77 999999999999999999999999999998 998886654321 112224456788754
No 456
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.24 E-value=9.7e-07 Score=75.74 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=29.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCC--C-CcEEEeeccC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDI 118 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p--~-G~I~i~g~di 118 (222)
++||.|+||||||||+++|++++.+ . +.|.+...|-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~ 39 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDG 39 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCc
Confidence 6899999999999999999999874 3 6677644443
No 457
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.12 E-value=3e-06 Score=77.08 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=39.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
.+++.+ |. .+|++++|+|+||+|||||+++|+++..++ +.+.+.|..
T Consensus 58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 345555 77 999999999999999999999999999998 777776643
No 458
>PRK08149 ATP synthase SpaL; Validated
Probab=98.12 E-value=1.6e-06 Score=81.40 Aligned_cols=66 Identities=15% Similarity=0.054 Sum_probs=47.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC----CcEEEeeccCCCCChHH----HhhccEEecCc
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGE----FLMRNGALPEE 136 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~----G~I~i~g~di~~~~~~e----~~~~ig~v~Q~ 136 (222)
.+++.+ +. .+|++++|+|+||+|||||+++|+++..++ |.|...+.++....... .++++++|+..
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 345556 77 999999999999999999999999998875 55666666553321211 12466777653
No 459
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.12 E-value=8.2e-07 Score=79.40 Aligned_cols=49 Identities=31% Similarity=0.304 Sum_probs=41.5
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~ 119 (222)
++.++++. .++++++|+|++|||||||++.|+..+... .++.+...|+.
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 55677777 889999999999999999999999988776 57877777754
No 460
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.11 E-value=2.6e-06 Score=78.33 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=39.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC---CC-cEEEeeccCCCCChHHHhhccEEecCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD---KY-SLAAVTNDIFTKEDGEFLMRNGALPEE 136 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p---~G-~I~i~g~di~~~~~~e~~~~ig~v~Q~ 136 (222)
.++.++.|+||+||||||||++|++.+.+ .+ .|...+.++. .....+....++++|.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-~~~~~~~~~~~~v~Q~ 192 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-FVYDEIETISASVCQS 192 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-Eeccccccccceeeee
Confidence 57899999999999999999999998743 33 5555554442 2222333334666664
No 461
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.10 E-value=2.6e-06 Score=69.54 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
|++++|+||||||||||++.|++.+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 689999999999999999999997653
No 462
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.09 E-value=6.5e-06 Score=67.21 Aligned_cols=97 Identities=21% Similarity=0.131 Sum_probs=51.5
Q ss_pred EEEEEcCCCChHHHHHHHHHc-CcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHHHHHHH
Q 027509 83 TVGIGGPVGTGKTALMLALCK-FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP 161 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~G-ll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~~~~~ 161 (222)
++.|.||+|+|||||...++- ..+....+.+...+- ...++.+++ ..++ .+ . ..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~---~~~~~~~~~----------~~~g-~~---~--------~~ 55 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE---SPEELIENA----------ESLG-WD---L--------ER 55 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC---CHHHHHHHH----------HHcC-CC---h--------HH
Confidence 468999999999999876544 333223454444322 122222211 0111 11 0 11
Q ss_pred HHhcCCcccccCcCCC-ChHHHH-----HHHHHHH-Hc-CCCeEEEecCCC
Q 027509 162 LEELSNLFKADLLLCE-SGGDNL-----AANFSRE-LA-DYIIYIIDVSGG 204 (222)
Q Consensus 162 L~~l~l~~~~d~~~~e-SgGqkQ-----rv~iArA-L~-~p~IlILD~t~G 204 (222)
+...+.....+..+.+ |+|++| +..+.++ .. +|+++|+|+++.
T Consensus 56 l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~ 106 (187)
T cd01124 56 LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSG 106 (187)
T ss_pred HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHH
Confidence 2233333445566666 888877 2333333 34 899999996664
No 463
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.09 E-value=2.3e-06 Score=76.80 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEe
Q 027509 76 NFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV 114 (222)
Q Consensus 76 ~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~ 114 (222)
.+. ..++.++|+||+|||||||+++|++++++. +.+.+.
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 345 679999999999999999999999999887 655653
No 464
>PLN02796 D-glycerate 3-kinase
Probab=98.09 E-value=2.9e-06 Score=77.61 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=32.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCC----CcEEEeeccCC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIF 119 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~----G~I~i~g~di~ 119 (222)
-++||+|++|||||||+++|++++.+. |.|.+++..+.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 359999999999999999999999863 66788887664
No 465
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.07 E-value=4.8e-06 Score=70.01 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF 119 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~ 119 (222)
.++.+++|.|++|||||||++.|++.+. .+.+.+...|.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~-~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG-DESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-CCceEEEeCCcc
Confidence 4688999999999999999999999883 345555555443
No 466
>PRK01889 GTPase RsgA; Reviewed
Probab=98.07 E-value=5.3e-06 Score=76.11 Aligned_cols=55 Identities=22% Similarity=0.103 Sum_probs=42.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~ 136 (222)
.+|++++|+|+||+|||||+++|+|...+. |.|.+++..... ....+.+.+++|.
T Consensus 193 ~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~ 248 (356)
T PRK01889 193 SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSG 248 (356)
T ss_pred hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCC
Confidence 579999999999999999999999999987 999987653211 1123456666664
No 467
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.05 E-value=4.6e-06 Score=78.17 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=40.2
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di 118 (222)
+.+|. .+|+.++|+|+||+|||||+++|+++.+++ |.|.+.|...
T Consensus 132 D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 132 DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 46788 999999999999999999999999999998 8888887643
No 468
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.02 E-value=1.7e-05 Score=67.23 Aligned_cols=137 Identities=18% Similarity=0.120 Sum_probs=67.8
Q ss_pred CCCCCCCcccCC--CCCCCcEEEEEcCCCChHHHHHHHHHcCcCC--C-CcEEEee-ccCCCCChHHHhhccEEecCchH
Q 027509 65 FSRRAPPILSRN--FNERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVT-NDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 65 ~~~~~~~~~~~~--~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p--~-G~I~i~g-~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
|.-..|+...+- ++=+.-|+.|+|+||+||||||..|+-...- . |.=-+.+ .++. ...+...+-++--
T Consensus 19 Yp~slPa~r~l~~~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s---~s~l~~~~k~~~~--- 92 (233)
T COG3910 19 YPFSLPAFRHLEERLEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDAS---HSALVDYAKLHKR--- 92 (233)
T ss_pred CcccchHHHhhhhhccccCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccc---cchHHHhHHHhhc---
Confidence 343445554433 3345779999999999999999999765442 2 2211111 1111 0011000000000
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHcCCCeEEEecCCCCCCCcc
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELADYIIYIIDVSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~~p~IlILD~t~G~d~p~K 210 (222)
.....+.+.. .+..-.+...++++.-+. ....-+.. |-|+--..-+.+.+...-|||||||+.---|+|
T Consensus 93 ~k~~~g~FlR---AEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~R 163 (233)
T COG3910 93 KKPPIGFFLR---AESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSR 163 (233)
T ss_pred CCCCcceEEe---hhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHH
Confidence 0000000000 011111111333332111 12233344 999999888999988889999998887665554
No 469
>PRK14974 cell division protein FtsY; Provisional
Probab=98.02 E-value=4.4e-06 Score=76.27 Aligned_cols=41 Identities=27% Similarity=0.489 Sum_probs=34.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~ 119 (222)
.+..+++++|+||+||||++..|+..+... .+|.+...|..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 346899999999999999999999988776 57877776654
No 470
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=9.1e-06 Score=85.63 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=42.6
Q ss_pred CCCCCCCcEEEEEcCCCChHHHHHHHHH----cCcCCC--CcEEEeeccCCCCChHHHhhccEEecCc
Q 027509 75 RNFNERAFTVGIGGPVGTGKTALMLALC----KFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (222)
Q Consensus 75 ~~~~~~GeivgIiGpNGSGKSTLLk~L~----Gll~p~--G~I~i~g~di~~~~~~e~~~~ig~v~Q~ 136 (222)
+.|. ..+++|+|||||||||||.+|+ |.++|. |.+++.+..+... ...+..|.++|++
T Consensus 24 I~F~--~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~~~~a~V~l~F~~ 87 (1311)
T TIGR00606 24 IDFF--SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--TDVRAQIRLQFRD 87 (1311)
T ss_pred eecc--cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--HhhhheeEEEEEc
Confidence 4454 3599999999999999999995 999984 8888877655432 2344556776653
No 471
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.00 E-value=3.3e-06 Score=75.13 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEE
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i 113 (222)
++++++++|+||+|||||++.|+|...++ |.|..
T Consensus 160 ~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 160 KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred ccceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 36899999999999999999999998886 88765
No 472
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.00 E-value=8.1e-06 Score=76.64 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=40.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
.+++.+ |. .+|+.++|+|+||+||||||++|+++..++ +.+.+.|..
T Consensus 134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~ 182 (422)
T TIGR02546 134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER 182 (422)
T ss_pred eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence 355556 77 899999999999999999999999999998 777776543
No 473
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.00 E-value=7.5e-06 Score=77.22 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=39.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
.+++.+ |. .+|+.++|+|+||+||||||++|+++..++ +.+...|..
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 445455 77 999999999999999999999999999988 776666653
No 474
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.99 E-value=5.9e-06 Score=77.73 Aligned_cols=48 Identities=25% Similarity=0.280 Sum_probs=40.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
..++..+ |. .+|+.++|+|+||+||||||++|+++..++ +.+.+.|..
T Consensus 143 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 143 IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 3455555 77 999999999999999999999999999988 777666653
No 475
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.97 E-value=7.1e-06 Score=65.81 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcC----cCCC-C----cEEEeec
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKF----LRDK-Y----SLAAVTN 116 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gl----l~p~-G----~I~i~g~ 116 (222)
.+.-.++|+|+||||||||++.|++. +.|+ | .+.+.+.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~ 58 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGF 58 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCE
Confidence 34566999999999999999999997 4466 6 4554443
No 476
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=1.5e-05 Score=81.30 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=40.3
Q ss_pred HHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-CC--CeEEEe-cCCCCCCC
Q 027509 160 GPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIP 208 (222)
Q Consensus 160 ~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~p--~IlILD-~t~G~d~p 208 (222)
+.|..+++... +++.+.+ ||||+||+.||++|+ +| .+|||| |+.|+|..
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~ 523 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQR 523 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHH
Confidence 35677777654 6888999 999999999999999 75 899999 67777754
No 477
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.96 E-value=1e-05 Score=76.27 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=40.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
..++.+ |. .+|++++|+|+||+|||||+++|++...++ |.|.+.|..
T Consensus 152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 345556 77 899999999999999999999999999988 888877753
No 478
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.95 E-value=1.3e-05 Score=81.79 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=41.3
Q ss_pred HHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-CC--CeEEEe-cCCCCCCC
Q 027509 160 GPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIP 208 (222)
Q Consensus 160 ~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~p--~IlILD-~t~G~d~p 208 (222)
+.|+.+++... +++.+.+ |+||+||+.||++|+ +| .||||| |+.|+|..
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~ 525 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQR 525 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHH
Confidence 46788888755 7899999 999999999999999 76 999999 66677654
No 479
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=7.3e-06 Score=84.48 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=32.7
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCcEEEEEcCCCChHHHHHHHHH
Q 027509 59 IYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALC 102 (222)
Q Consensus 59 ~~~~g~~~~~~~~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~ 102 (222)
+.+.++|.+ ...++|+..+.+++|+|||||||||||.+||
T Consensus 8 l~nf~s~~~----~~~idF~~~~gl~~I~G~nGaGKSTildAI~ 47 (1042)
T TIGR00618 8 LKNFGSYKG----THTIDFTALGPIFLICGKTGAGKTTLLDAIT 47 (1042)
T ss_pred EeCeeccCC----CceeeecCCCCeEEEECCCCCCHHHHHHHHH
Confidence 567788873 2346787545999999999999999999999
No 480
>PRK00098 GTPase RsgA; Reviewed
Probab=97.94 E-value=6.3e-06 Score=73.73 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEE
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i 113 (222)
+|.+++|+|+||+|||||+++|++...+. |.|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 58899999999999999999999998876 88875
No 481
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.93 E-value=7e-06 Score=77.51 Aligned_cols=64 Identities=9% Similarity=0.106 Sum_probs=46.3
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC----CcEEEeeccCCCCChHHH----hhccEEecCchH
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEF----LMRNGALPEERI 138 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~----G~I~i~g~di~~~~~~e~----~~~ig~v~Q~~~ 138 (222)
+..|. .+|++++|+|+||+|||||+++|+++..++ |.|.+.+.++...- .+. .+..++|+|...
T Consensus 167 D~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~-~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 167 NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFI-ENILGAEGRARSVVIAAPA 239 (455)
T ss_pred eecccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHH-HhhcCcCCCceEEEEEECC
Confidence 44577 899999999999999999999999999886 66777776663210 011 134677776543
No 482
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.92 E-value=3e-05 Score=75.97 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC---------CcEEEeeccC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK---------YSLAAVTNDI 118 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~---------G~I~i~g~di 118 (222)
...+.+.|+||||+|||||+++|.++..+. .-|.+++..+
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 345679999999999999999999987543 3366666554
No 483
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.91 E-value=9.2e-06 Score=77.83 Aligned_cols=49 Identities=24% Similarity=0.217 Sum_probs=42.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di 118 (222)
.++..+++. ..|+.+.|+||||||||||+++|+|+++|. |.+.+....|
T Consensus 198 ~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 198 QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 355667888 889999999999999999999999999997 9888776555
No 484
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.91 E-value=1.2e-05 Score=75.40 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=40.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di 118 (222)
.+++.+ |. .+|++++|+|+||+|||||+++|++...++ |.|.+.|...
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 345555 77 999999999999999999999999999988 8888777544
No 485
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.87 E-value=1.1e-05 Score=65.93 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEee
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g 115 (222)
.+|++++|+|++||||||+.+.|++.+.+. +.+.+.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 479999999999999999999999998766 4565443
No 486
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.86 E-value=1.2e-05 Score=62.36 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHcC
Q 027509 84 VGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 84 vgIiGpNGSGKSTLLk~L~Gl 104 (222)
++|+|++|||||||++.|++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999997
No 487
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.85 E-value=6.7e-06 Score=69.39 Aligned_cols=128 Identities=30% Similarity=0.371 Sum_probs=65.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHHHHH
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL 159 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~~~ 159 (222)
.--+++|+|+.|||||||++.++..+...-++.+...+....-+.+..++.+. ....+..|..+... .. ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~----~~~~l~~gcic~~~-~~---~~~ 92 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGA----PAIQINTGKECHLD-AH---MVA 92 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCC----cEEEEcCCCcccCC-hH---HHH
Confidence 35678899999999999999998764432234443344321112222222221 00011112112121 11 122
Q ss_pred HHHHhcCCcccccCcCCC-Ch-HHHHHHHHHHHHc-CCCeEEEecCCCCCCCccCCCceeecc
Q 027509 160 GPLEELSNLFKADLLLCE-SG-GDNLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQAD 219 (222)
Q Consensus 160 ~~L~~l~l~~~~d~~~~e-Sg-GqkQrv~iArAL~-~p~IlILD~t~G~d~p~K~~~~~~~~~ 219 (222)
..++.+... ..|..+.| || -.. +..+ .+. .-.++++|.+.+++.+.+.+..+..++
T Consensus 93 ~~l~~~~~~-~~d~IiIEt~G~l~~-~~~~--~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~ 151 (207)
T TIGR00073 93 HALEDLPLD-DIDLLFIENVGNLVC-PADF--DLGEHMRVVLLSVTEGDDKPLKYPGMFKEAD 151 (207)
T ss_pred HHHHHhccC-CCCEEEEecCCCcCC-Cccc--ccccCeEEEEEecCcccchhhhhHhHHhhCC
Confidence 455555432 34888888 66 111 1111 233 556889999988887766654443333
No 488
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.85 E-value=1.6e-05 Score=66.96 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=30.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCC-C-CcEEEeeccC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDI 118 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p-~-G~I~i~g~di 118 (222)
++.|.||+||||||+++.|++.+.+ . +.|...+.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 6899999999999999999998875 3 6777766655
No 489
>PRK05922 type III secretion system ATPase; Validated
Probab=97.84 E-value=1.8e-05 Score=74.43 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=36.4
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeec
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN 116 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~ 116 (222)
..|. .+|+.++|+|+||+|||||+++|++..+++ |.+...|.
T Consensus 150 ~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGe 193 (434)
T PRK05922 150 AFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE 193 (434)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCC
Confidence 3466 999999999999999999999999999888 77766554
No 490
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.84 E-value=1.5e-05 Score=74.67 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=36.3
Q ss_pred CCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 76 NFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 76 ~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
.|. .+|++++|+|+||+||||||++|+++..++ +.+...|..
T Consensus 131 l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 131 LLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred eEEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 377 999999999999999999999999999988 666656543
No 491
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.82 E-value=1.6e-05 Score=84.26 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=32.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
.+++|+|+|||||||+|++|++++.+. |.+.+++.+
T Consensus 28 ~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred CeEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 599999999999999999999999887 888888654
No 492
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.82 E-value=1e-05 Score=66.06 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH---cCcCCC-CcEE
Q 027509 80 RAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLA 112 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~---Gll~p~-G~I~ 112 (222)
+..+++|+|++||||||+++.|+ |+...+ |.+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~ 38 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLL 38 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHH
Confidence 35689999999999999999999 766655 6544
No 493
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=1.3e-05 Score=75.18 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++|++++|+||||+|||||++.|++.+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999999853
No 494
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=1.6e-05 Score=73.50 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=36.3
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C--cEEEeeccCC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIF 119 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G--~I~i~g~di~ 119 (222)
.+...++. ++|.+++|+||||+||||++..|+..+... | +|.+...|..
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 34445444 789999999999999999999999865432 3 5666665553
No 495
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.81 E-value=1.2e-05 Score=65.79 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=31.1
Q ss_pred EcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCch
Q 027509 87 GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (222)
Q Consensus 87 iGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~ 137 (222)
+|++|||||||+++|++.+ |.+.+++..+. ......+...|+.+|+.
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~-~~~~~~~~~~g~~~~~~ 47 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLH-PRRNIEKMASGEPLNDD 47 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCeEEeCccCC-chhhhccccCCCCCChh
Confidence 6999999999999999987 56777774332 11111122356777663
No 496
>PRK07429 phosphoribulokinase; Provisional
Probab=97.80 E-value=2.7e-05 Score=70.88 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
+--++||.|++|||||||++.|++++.+.
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 45689999999999999999999999887
No 497
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.80 E-value=1.5e-05 Score=65.68 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCC--cEEEeeccC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDI 118 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G--~I~i~g~di 118 (222)
.+|++++|+|++|||||||.+.|.+.+...| .+.+++.++
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 6799999999999999999999999886543 456665444
No 498
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.79 E-value=1.7e-05 Score=74.39 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC----CcEEEeeccCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIF 119 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~----G~I~i~g~di~ 119 (222)
+--++||.|++|||||||++.|.+++++. +.|.+++..+.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt 254 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT 254 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence 34899999999999999999999998753 56777776653
No 499
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.78 E-value=2.1e-05 Score=64.39 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=25.7
Q ss_pred cccCCCCCCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 72 ~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
+..+++..+.-.++|+|++|||||||++.+++
T Consensus 10 ~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44566664444559999999999999999998
No 500
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.77 E-value=2.4e-05 Score=73.69 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=39.2
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di 118 (222)
.++.+ +. .+|++++|+|+||+|||||+++|++...++ +.|...|...
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGerg 195 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG 195 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccc
Confidence 34455 67 899999999999999999999999988776 7777777654
Done!