Query 027509
Match_columns 222
No_of_seqs 252 out of 2157
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 18:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 2.5E-33 8.5E-38 246.1 10.1 145 65-209 17-178 (275)
2 3tif_A Uncharacterized ABC tra 100.0 2.4E-32 8.2E-37 234.1 13.1 139 70-208 19-179 (235)
3 3tui_C Methionine import ATP-b 100.0 2.4E-32 8.1E-37 248.8 12.7 139 70-208 42-197 (366)
4 1z47_A CYSA, putative ABC-tran 100.0 8.5E-33 2.9E-37 250.8 9.2 146 64-211 23-182 (355)
5 1g6h_A High-affinity branched- 100.0 8.5E-32 2.9E-36 233.4 13.5 140 69-208 20-187 (257)
6 2olj_A Amino acid ABC transpor 100.0 5.8E-32 2E-36 235.9 12.5 141 69-209 37-194 (263)
7 1ji0_A ABC transporter; ATP bi 100.0 5.2E-32 1.8E-36 232.6 11.3 141 69-209 19-174 (240)
8 3fvq_A Fe(3+) IONS import ATP- 100.0 6E-32 2.1E-36 245.6 11.3 143 69-211 17-175 (359)
9 4g1u_C Hemin import ATP-bindin 100.0 8.6E-32 2.9E-36 235.0 11.3 139 69-208 24-181 (266)
10 2pcj_A ABC transporter, lipopr 100.0 8.2E-32 2.8E-36 229.1 10.9 140 69-208 17-174 (224)
11 2ihy_A ABC transporter, ATP-bi 100.0 1.6E-31 5.4E-36 234.9 12.5 141 69-209 34-196 (279)
12 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-31 5.1E-36 232.4 10.9 140 69-209 28-181 (256)
13 1b0u_A Histidine permease; ABC 100.0 1.8E-31 6.1E-36 232.3 11.2 140 69-208 19-187 (262)
14 1sgw_A Putative ABC transporte 100.0 2.1E-32 7.2E-37 232.1 5.3 134 70-210 23-169 (214)
15 3rlf_A Maltose/maltodextrin im 100.0 1.6E-31 5.5E-36 244.4 11.1 140 69-210 16-169 (381)
16 2ff7_A Alpha-hemolysin translo 100.0 1.1E-31 3.8E-36 231.7 9.0 136 68-208 21-179 (247)
17 1mv5_A LMRA, multidrug resista 100.0 3.6E-31 1.2E-35 227.5 11.9 139 69-211 15-176 (243)
18 2ixe_A Antigen peptide transpo 100.0 5.9E-31 2E-35 230.1 12.5 141 69-209 32-191 (271)
19 2yyz_A Sugar ABC transporter, 100.0 3.5E-31 1.2E-35 240.6 11.2 139 70-210 17-169 (359)
20 1oxx_K GLCV, glucose, ABC tran 100.0 2.9E-31 9.9E-36 240.5 9.5 141 71-211 20-177 (353)
21 2yz2_A Putative ABC transporte 100.0 5.2E-31 1.8E-35 229.6 10.2 137 70-209 21-173 (266)
22 1v43_A Sugar-binding transport 100.0 6.2E-31 2.1E-35 239.9 11.0 139 70-210 25-177 (372)
23 3nh6_A ATP-binding cassette SU 100.0 5E-31 1.7E-35 234.8 9.9 141 65-207 63-223 (306)
24 3d31_A Sulfate/molybdate ABC t 100.0 2.4E-31 8.1E-36 240.7 7.6 136 71-210 15-163 (348)
25 2onk_A Molybdate/tungstate ABC 100.0 1E-30 3.5E-35 225.0 10.8 135 71-209 14-161 (240)
26 2it1_A 362AA long hypothetical 100.0 4.2E-31 1.4E-35 240.2 8.7 140 69-210 16-169 (362)
27 2qi9_C Vitamin B12 import ATP- 100.0 1.2E-30 4.2E-35 225.8 10.9 135 70-208 14-167 (249)
28 1g29_1 MALK, maltose transport 100.0 7.8E-31 2.7E-35 239.2 8.1 140 70-211 17-176 (372)
29 2ghi_A Transport protein; mult 100.0 1.7E-29 5.7E-34 219.6 12.5 136 69-209 33-190 (260)
30 2zu0_C Probable ATP-dependent 100.0 2E-29 7E-34 219.8 12.0 141 69-209 33-199 (267)
31 2d2e_A SUFC protein; ABC-ATPas 100.0 1.2E-29 4.2E-34 219.0 9.6 140 69-208 16-177 (250)
32 2nq2_C Hypothetical ABC transp 100.0 1.5E-29 5.3E-34 219.1 9.9 128 69-209 18-163 (253)
33 3gd7_A Fusion complex of cysti 100.0 3.5E-29 1.2E-33 229.6 8.9 134 68-208 33-189 (390)
34 2cbz_A Multidrug resistance-as 100.0 1.1E-28 3.9E-33 211.5 10.4 127 69-208 18-161 (237)
35 3b5x_A Lipid A export ATP-bind 100.0 3E-28 1E-32 232.5 12.9 136 69-208 356-514 (582)
36 3b60_A Lipid A export ATP-bind 100.0 3.2E-28 1.1E-32 232.2 12.1 135 69-207 356-513 (582)
37 2pjz_A Hypothetical protein ST 100.0 5.5E-29 1.9E-33 217.1 6.2 132 70-209 19-163 (263)
38 2pze_A Cystic fibrosis transme 99.9 5.3E-28 1.8E-32 206.2 11.9 124 68-210 20-166 (229)
39 3qf4_B Uncharacterized ABC tra 99.9 6E-28 2E-32 231.3 10.9 138 65-207 364-524 (598)
40 4a82_A Cystic fibrosis transme 99.9 6.8E-28 2.3E-32 229.9 10.6 135 68-207 353-510 (578)
41 2yl4_A ATP-binding cassette SU 99.9 7.3E-28 2.5E-32 230.3 10.6 138 69-208 357-517 (595)
42 3qf4_A ABC transporter, ATP-bi 99.9 2E-27 6.9E-32 227.3 10.5 139 68-207 355-512 (587)
43 2bbs_A Cystic fibrosis transme 99.9 2.4E-26 8.1E-31 203.1 9.6 122 69-210 51-195 (290)
44 4f4c_A Multidrug resistance pr 99.9 1.1E-25 3.9E-30 231.9 11.4 135 69-206 1092-1249(1321)
45 3g5u_A MCG1178, multidrug resi 99.9 4.8E-25 1.6E-29 226.8 13.0 137 69-208 1046-1205(1284)
46 4f4c_A Multidrug resistance pr 99.9 8.7E-25 3E-29 225.3 13.5 135 68-207 430-587 (1321)
47 3g5u_A MCG1178, multidrug resi 99.9 3.9E-25 1.3E-29 227.4 10.6 137 69-206 403-558 (1284)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 1.5E-24 5.2E-29 205.7 7.7 141 64-208 30-192 (538)
49 3ozx_A RNAse L inhibitor; ATP 99.9 2.5E-24 8.6E-29 204.4 9.0 125 72-210 284-421 (538)
50 3bk7_A ABC transporter ATP-bin 99.9 1.2E-24 4E-29 209.3 4.9 123 71-209 371-506 (607)
51 1yqt_A RNAse L inhibitor; ATP- 99.9 5.5E-24 1.9E-28 201.9 9.1 123 72-210 302-437 (538)
52 3bk7_A ABC transporter ATP-bin 99.9 4.2E-24 1.4E-28 205.5 7.4 135 70-208 106-262 (607)
53 3j16_B RLI1P; ribosome recycli 99.9 7.5E-23 2.6E-27 196.8 10.7 139 70-208 92-255 (608)
54 3ozx_A RNAse L inhibitor; ATP 99.9 4.8E-23 1.6E-27 195.6 8.9 134 72-208 16-172 (538)
55 3j16_B RLI1P; ribosome recycli 99.9 1.3E-22 4.4E-27 195.2 10.7 124 71-210 362-503 (608)
56 2iw3_A Elongation factor 3A; a 99.9 6.7E-22 2.3E-26 198.3 8.4 47 69-115 686-734 (986)
57 3ux8_A Excinuclease ABC, A sub 99.8 8.8E-22 3E-26 190.4 7.3 138 68-209 30-239 (670)
58 3b85_A Phosphate starvation-in 99.8 1.4E-23 4.8E-28 176.9 -10.3 110 79-205 20-134 (208)
59 2iw3_A Elongation factor 3A; a 99.8 3.3E-20 1.1E-24 186.1 8.2 121 69-208 448-582 (986)
60 3ux8_A Excinuclease ABC, A sub 99.8 3.5E-20 1.2E-24 179.2 7.1 52 157-208 522-580 (670)
61 2npi_A Protein CLP1; CLP1-PCF1 99.8 3.3E-22 1.1E-26 186.7 -7.0 122 74-208 130-276 (460)
62 3b9q_A Chloroplast SRP recepto 99.8 4.1E-20 1.4E-24 163.8 1.7 127 73-207 91-235 (302)
63 2og2_A Putative signal recogni 99.7 2.2E-19 7.7E-24 162.9 2.6 126 74-207 149-292 (359)
64 4gp7_A Metallophosphoesterase; 99.7 9.2E-19 3.1E-23 141.8 3.6 111 75-206 2-115 (171)
65 3aez_A Pantothenate kinase; tr 99.7 1.5E-19 5E-24 160.9 -2.2 110 79-206 88-207 (312)
66 1ye8_A Protein THEP1, hypothet 99.7 9.4E-19 3.2E-23 143.7 2.7 100 83-204 2-112 (178)
67 4aby_A DNA repair protein RECN 99.7 2.9E-18 9.9E-23 155.4 5.7 66 71-137 50-156 (415)
68 2r6f_A Excinuclease ABC subuni 99.7 3.4E-18 1.2E-22 170.9 5.9 140 71-210 639-884 (972)
69 2vf7_A UVRA2, excinuclease ABC 99.7 2.1E-18 7.2E-23 171.0 3.0 55 156-210 708-769 (842)
70 1z6g_A Guanylate kinase; struc 99.7 1.1E-19 3.7E-24 153.0 -6.2 123 72-203 13-155 (218)
71 3sop_A Neuronal-specific septi 99.7 8.7E-20 3E-24 159.2 -7.1 114 82-206 3-127 (270)
72 2ygr_A Uvrabc system protein A 99.7 1.7E-17 5.7E-22 166.4 6.2 53 158-210 843-902 (993)
73 2pt7_A CAG-ALFA; ATPase, prote 99.6 2.4E-17 8.3E-22 147.4 2.1 89 71-204 160-251 (330)
74 2v9p_A Replication protein E1; 99.6 1.5E-17 5E-22 148.0 -0.2 114 70-212 114-231 (305)
75 1rj9_A FTSY, signal recognitio 99.6 3.1E-16 1.1E-20 139.0 7.9 121 80-206 101-235 (304)
76 3pih_A Uvrabc system protein A 99.6 1.5E-15 5.1E-20 151.8 12.7 54 156-209 783-843 (916)
77 1tq4_A IIGP1, interferon-induc 99.6 1.6E-18 5.6E-23 159.8 -8.5 129 70-210 37-202 (413)
78 2jeo_A Uridine-cytidine kinase 99.6 1.2E-17 4.2E-22 142.1 -3.6 116 71-202 14-142 (245)
79 1e69_A Chromosome segregation 99.6 1.1E-15 3.8E-20 135.4 8.4 37 171-207 213-256 (322)
80 1znw_A Guanylate kinase, GMP k 99.5 2.2E-16 7.6E-21 130.9 -4.3 59 77-139 15-75 (207)
81 2f1r_A Molybdopterin-guanine d 99.5 4.4E-17 1.5E-21 133.4 -9.8 107 82-197 3-125 (171)
82 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 1.6E-14 5.4E-19 130.6 5.9 38 172-209 274-320 (365)
83 1tf7_A KAIC; homohexamer, hexa 99.5 4.3E-14 1.5E-18 133.0 8.1 108 75-208 274-386 (525)
84 2rcn_A Probable GTPase ENGC; Y 99.5 3.6E-14 1.2E-18 128.7 6.6 113 74-192 208-329 (358)
85 2i3b_A HCR-ntpase, human cance 99.5 1.2E-15 4.1E-20 126.5 -3.2 103 81-205 1-117 (189)
86 1cr0_A DNA primase/helicase; R 99.5 3.9E-14 1.3E-18 123.0 5.7 126 70-204 23-158 (296)
87 2dpy_A FLII, flagellum-specifi 99.5 1.3E-14 4.6E-19 134.5 2.3 125 69-208 145-282 (438)
88 2eyu_A Twitching motility prot 99.5 5E-14 1.7E-18 122.1 5.7 90 71-203 16-108 (261)
89 3e70_C DPA, signal recognition 99.4 1E-13 3.5E-18 124.1 7.2 119 79-206 127-256 (328)
90 2yhs_A FTSY, cell division pro 99.4 4.9E-14 1.7E-18 132.6 4.2 65 73-137 284-356 (503)
91 3asz_A Uridine kinase; cytidin 99.4 1.8E-15 6.2E-20 124.7 -6.7 110 79-202 4-120 (211)
92 1zp6_A Hypothetical protein AT 99.3 1.7E-13 5.8E-18 110.8 1.3 107 79-197 7-131 (191)
93 1tf7_A KAIC; homohexamer, hexa 99.3 4.4E-13 1.5E-17 126.1 2.9 72 66-138 22-98 (525)
94 2obl_A ESCN; ATPase, hydrolase 99.3 5E-13 1.7E-17 120.4 3.0 48 69-117 59-108 (347)
95 1p9r_A General secretion pathw 99.3 2.4E-14 8.2E-19 132.1 -6.1 119 77-199 163-315 (418)
96 2yv5_A YJEQ protein; hydrolase 99.3 1.1E-13 3.6E-18 122.1 -1.7 107 79-189 163-300 (302)
97 2ehv_A Hypothetical protein PH 99.3 4.3E-13 1.5E-17 112.1 2.1 58 79-137 28-88 (251)
98 2o8b_B DNA mismatch repair pro 99.3 5.5E-13 1.9E-17 134.8 2.5 102 69-206 769-882 (1022)
99 1htw_A HI0065; nucleotide-bind 99.3 5.9E-13 2E-17 107.3 0.5 61 71-137 22-84 (158)
100 2gza_A Type IV secretion syste 99.3 2.3E-12 7.9E-17 116.2 4.0 63 73-137 166-231 (361)
101 1nlf_A Regulatory protein REPA 99.2 5.3E-12 1.8E-16 108.9 6.0 109 79-204 28-144 (279)
102 1pui_A ENGB, probable GTP-bind 99.2 1.2E-12 4.2E-17 106.6 1.4 128 77-206 21-182 (210)
103 3thx_B DNA mismatch repair pro 99.2 2.4E-12 8.4E-17 128.7 3.7 105 69-207 660-767 (918)
104 1ewq_A DNA mismatch repair pro 99.2 1.8E-12 6.1E-17 127.6 2.6 94 69-202 566-664 (765)
105 1lw7_A Transcriptional regulat 99.2 4.4E-13 1.5E-17 120.5 -3.4 112 73-201 159-285 (365)
106 1vma_A Cell division protein F 99.2 2.4E-11 8.1E-16 107.7 7.5 94 75-203 97-196 (306)
107 2qnr_A Septin-2, protein NEDD5 99.2 5.7E-14 2E-18 123.8 -9.4 113 83-206 20-142 (301)
108 3qkt_A DNA double-strand break 99.2 1.3E-11 4.5E-16 110.0 5.8 37 172-208 243-288 (339)
109 2w0m_A SSO2452; RECA, SSPF, un 99.2 5.7E-12 1.9E-16 103.6 3.1 118 71-205 11-135 (235)
110 3tr0_A Guanylate kinase, GMP k 99.2 9.2E-12 3.2E-16 101.4 4.2 60 76-138 1-61 (205)
111 3jvv_A Twitching mobility prot 99.2 1.2E-11 4E-16 111.8 5.2 84 79-204 121-207 (356)
112 3c8u_A Fructokinase; YP_612366 99.2 2.6E-13 8.7E-18 112.4 -6.0 41 78-118 19-63 (208)
113 4a74_A DNA repair and recombin 99.2 8.5E-12 2.9E-16 102.9 3.2 39 79-117 23-69 (231)
114 2ewv_A Twitching motility prot 99.2 1.8E-11 6.2E-16 111.0 5.1 83 79-203 134-219 (372)
115 2qm8_A GTPase/ATPase; G protei 99.1 3.4E-12 1.2E-16 114.2 -0.6 68 71-138 44-117 (337)
116 1s96_A Guanylate kinase, GMP k 99.1 1.3E-11 4.4E-16 104.3 2.8 57 79-139 14-73 (219)
117 1u0l_A Probable GTPase ENGC; p 99.1 2.7E-11 9.3E-16 106.4 3.4 60 79-138 167-230 (301)
118 3thx_A DNA mismatch repair pro 99.1 4.2E-11 1.4E-15 120.1 5.2 33 70-102 650-683 (934)
119 2kjq_A DNAA-related protein; s 99.1 7.6E-11 2.6E-15 93.6 5.5 39 80-118 35-75 (149)
120 2x8a_A Nuclear valosin-contain 99.1 2.2E-13 7.4E-18 118.5 -10.4 113 71-197 35-159 (274)
121 3szr_A Interferon-induced GTP- 99.1 1E-11 3.5E-16 119.2 -0.3 54 84-137 48-106 (608)
122 1nij_A Hypothetical protein YJ 99.1 4.1E-13 1.4E-17 119.0 -9.3 40 81-120 4-52 (318)
123 2o5v_A DNA replication and rep 99.1 6.3E-11 2.2E-15 107.2 4.1 31 72-103 17-48 (359)
124 2qag_B Septin-6, protein NEDD5 99.1 1.2E-11 4E-16 114.6 -0.8 60 72-138 30-92 (427)
125 3euj_A Chromosome partition pr 99.1 3.7E-11 1.3E-15 112.7 2.4 49 71-120 19-69 (483)
126 1udx_A The GTP-binding protein 99.0 1.1E-11 3.7E-16 114.3 -2.1 121 73-209 148-283 (416)
127 1wb9_A DNA mismatch repair pro 99.0 6.1E-11 2.1E-15 117.3 2.9 37 70-106 596-632 (800)
128 2bbw_A Adenylate kinase 4, AK4 99.0 1.3E-12 4.4E-17 110.7 -8.6 39 79-117 25-67 (246)
129 1pzn_A RAD51, DNA repair and r 99.0 8.4E-11 2.9E-15 105.6 2.6 103 75-205 124-243 (349)
130 4eun_A Thermoresistant glucoki 99.0 1.7E-10 5.8E-15 94.7 3.9 59 76-138 23-82 (200)
131 1odf_A YGR205W, hypothetical 3 99.0 3.4E-11 1.2E-15 105.8 -0.9 114 79-207 29-167 (290)
132 2qag_C Septin-7; cell cycle, c 99.0 4.3E-11 1.5E-15 110.4 -1.5 117 70-206 25-154 (418)
133 1qhl_A Protein (cell division 98.9 3.7E-11 1.3E-15 102.4 -2.4 55 82-136 28-91 (227)
134 1sq5_A Pantothenate kinase; P- 98.9 5.3E-10 1.8E-14 98.4 3.5 53 79-136 78-136 (308)
135 2cvh_A DNA repair and recombin 98.9 1.2E-09 4.2E-14 89.3 5.2 35 79-115 18-52 (220)
136 3lnc_A Guanylate kinase, GMP k 98.9 6.2E-10 2.1E-14 93.1 3.1 36 72-107 17-54 (231)
137 4e22_A Cytidylate kinase; P-lo 98.9 4.4E-10 1.5E-14 96.0 1.8 60 78-137 24-96 (252)
138 1lvg_A Guanylate kinase, GMP k 98.9 5.9E-10 2E-14 91.8 2.3 27 80-106 3-29 (198)
139 1iy2_A ATP-dependent metallopr 98.9 1.3E-11 4.5E-16 106.2 -8.0 63 71-136 64-127 (278)
140 1t9h_A YLOQ, probable GTPase E 98.9 3.5E-10 1.2E-14 100.4 0.8 60 77-137 168-232 (307)
141 1ls1_A Signal recognition part 98.8 9.2E-09 3.1E-13 90.3 9.6 46 73-119 91-137 (295)
142 3a00_A Guanylate kinase, GMP k 98.8 1E-09 3.5E-14 89.1 2.7 28 81-108 1-28 (186)
143 1n0w_A DNA repair protein RAD5 98.8 1.7E-09 5.7E-14 89.8 3.5 39 79-117 22-68 (243)
144 3uie_A Adenylyl-sulfate kinase 98.8 3.6E-09 1.2E-13 86.6 4.8 48 71-118 14-64 (200)
145 1oix_A RAS-related protein RAB 98.8 2.1E-10 7.2E-15 93.0 -3.2 37 81-117 29-77 (191)
146 1sxj_E Activator 1 40 kDa subu 98.8 2.4E-09 8.3E-14 94.1 3.3 54 82-137 37-92 (354)
147 3ec2_A DNA replication protein 98.7 1.3E-08 4.3E-13 81.7 6.2 34 75-108 31-65 (180)
148 2px0_A Flagellar biosynthesis 98.7 3.2E-08 1.1E-12 86.9 8.9 44 76-119 100-145 (296)
149 2j41_A Guanylate kinase; GMP, 98.7 7.4E-09 2.5E-13 84.0 3.5 56 79-138 4-61 (207)
150 2oap_1 GSPE-2, type II secreti 98.6 6.3E-09 2.2E-13 98.1 1.4 46 72-117 250-297 (511)
151 1in4_A RUVB, holliday junction 98.6 3.9E-10 1.3E-14 100.0 -6.8 55 82-137 52-112 (334)
152 3lda_A DNA repair protein RAD5 98.6 2.5E-08 8.6E-13 91.4 4.5 65 79-143 176-249 (400)
153 3pih_A Uvrabc system protein A 98.6 8.3E-09 2.9E-13 103.3 0.8 109 96-209 383-501 (916)
154 2bdt_A BH3686; alpha-beta prot 98.6 1.5E-08 5.2E-13 81.7 2.1 48 81-137 2-50 (189)
155 2dr3_A UPF0273 protein PH0284; 98.6 4.5E-08 1.5E-12 81.1 4.8 59 79-137 21-80 (247)
156 1kgd_A CASK, peripheral plasma 98.6 3.4E-08 1.2E-12 79.7 3.7 36 80-115 4-41 (180)
157 1rz3_A Hypothetical protein rb 98.5 3.6E-08 1.2E-12 80.9 3.7 44 79-122 20-64 (201)
158 1zu4_A FTSY; GTPase, signal re 98.5 8.6E-08 2.9E-12 85.2 4.5 48 73-120 96-145 (320)
159 2f9l_A RAB11B, member RAS onco 98.5 8.8E-09 3E-13 83.5 -1.9 23 83-105 7-29 (199)
160 2vp4_A Deoxynucleoside kinase; 98.5 8.2E-08 2.8E-12 80.5 3.7 37 79-118 18-54 (230)
161 3kta_A Chromosome segregation 98.4 6.7E-08 2.3E-12 77.3 2.9 36 74-110 19-56 (182)
162 1ixz_A ATP-dependent metallopr 98.4 1.8E-08 6.1E-13 85.0 -0.7 63 71-136 40-103 (254)
163 3ney_A 55 kDa erythrocyte memb 98.4 8.5E-08 2.9E-12 80.0 3.3 27 80-106 18-44 (197)
164 2vf7_A UVRA2, excinuclease ABC 98.4 9.1E-08 3.1E-12 95.1 3.8 118 90-208 271-415 (842)
165 3k1j_A LON protease, ATP-depen 98.4 3.3E-08 1.1E-12 94.4 0.4 64 70-138 48-114 (604)
166 1knq_A Gluconate kinase; ALFA/ 98.4 1.3E-07 4.3E-12 75.1 3.7 53 79-136 6-59 (175)
167 3tau_A Guanylate kinase, GMP k 98.4 1.5E-07 5.2E-12 77.6 4.1 36 79-114 6-43 (208)
168 2ffh_A Protein (FFH); SRP54, s 98.4 1.7E-07 5.9E-12 86.5 4.2 47 73-120 91-138 (425)
169 1cke_A CK, MSSA, protein (cyti 98.4 2.7E-08 9.4E-13 82.0 -1.4 56 81-136 5-73 (227)
170 3vaa_A Shikimate kinase, SK; s 98.3 1.7E-07 5.8E-12 76.5 2.8 36 70-105 13-49 (199)
171 3tqc_A Pantothenate kinase; bi 98.3 3.7E-07 1.2E-11 81.4 4.6 43 81-123 92-137 (321)
172 2r6a_A DNAB helicase, replicat 98.3 1.1E-06 3.8E-11 80.9 7.7 128 71-208 192-328 (454)
173 2www_A Methylmalonic aciduria 98.3 3.7E-07 1.3E-11 81.7 3.2 42 79-120 72-114 (349)
174 1f2t_B RAD50 ABC-ATPase; DNA d 98.2 6.1E-07 2.1E-11 71.3 3.8 39 171-209 51-98 (148)
175 2pez_A Bifunctional 3'-phospho 98.2 2E-07 6.7E-12 74.5 1.0 40 79-118 3-44 (179)
176 1kag_A SKI, shikimate kinase I 98.2 5.2E-07 1.8E-11 71.1 2.9 28 80-107 3-30 (173)
177 3cr8_A Sulfate adenylyltranfer 98.2 2.8E-07 9.7E-12 87.6 1.6 87 79-166 367-468 (552)
178 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1E-06 3.6E-11 80.5 4.6 37 79-115 18-67 (392)
179 2p67_A LAO/AO transport system 98.2 4.6E-07 1.6E-11 80.6 1.7 50 71-120 45-96 (341)
180 3kl4_A SRP54, signal recogniti 98.2 2.2E-07 7.6E-12 86.0 -0.5 43 78-120 94-137 (433)
181 3m6a_A ATP-dependent protease 98.1 8.8E-07 3E-11 83.7 2.0 44 73-116 100-144 (543)
182 2r6f_A Excinuclease ABC subuni 98.1 5.4E-06 1.8E-10 83.3 7.1 48 160-207 486-539 (972)
183 2zr9_A Protein RECA, recombina 98.0 3.2E-06 1.1E-10 75.8 4.8 39 79-117 59-98 (349)
184 2ygr_A Uvrabc system protein A 98.0 5.5E-06 1.9E-10 83.5 6.6 48 160-207 503-556 (993)
185 2qtf_A Protein HFLX, GTP-bindi 98.0 5.2E-06 1.8E-10 74.9 5.7 35 83-117 181-227 (364)
186 1w1w_A Structural maintenance 98.0 2.3E-06 8E-11 78.1 3.4 30 79-108 24-53 (430)
187 2qt1_A Nicotinamide riboside k 98.0 3.2E-06 1.1E-10 68.9 3.6 28 79-106 19-46 (207)
188 3nwj_A ATSK2; P loop, shikimat 98.0 5E-07 1.7E-11 77.6 -1.4 38 69-106 32-73 (250)
189 2ius_A DNA translocase FTSK; n 97.9 7.3E-07 2.5E-11 84.1 -1.4 44 76-119 161-208 (512)
190 2dhr_A FTSH; AAA+ protein, hex 97.9 4E-06 1.4E-10 78.8 3.6 63 71-136 55-118 (499)
191 3t34_A Dynamin-related protein 97.9 3.5E-05 1.2E-09 68.5 8.8 39 71-111 26-67 (360)
192 1svm_A Large T antigen; AAA+ f 97.9 2.6E-06 8.8E-11 77.4 1.4 127 71-204 158-312 (377)
193 1jjv_A Dephospho-COA kinase; P 97.9 6.6E-06 2.3E-10 66.9 3.4 29 83-115 4-32 (206)
194 2dy1_A Elongation factor G; tr 97.9 4.3E-06 1.5E-10 80.9 2.5 58 79-137 7-67 (665)
195 3kta_B Chromosome segregation 97.9 8.6E-06 2.9E-10 66.3 3.8 36 172-207 59-101 (173)
196 3hr8_A Protein RECA; alpha and 97.8 5.1E-06 1.8E-10 75.0 2.4 56 79-136 59-115 (356)
197 2yvu_A Probable adenylyl-sulfa 97.8 7.8E-06 2.7E-10 65.5 3.1 35 79-113 11-46 (186)
198 1m7g_A Adenylylsulfate kinase; 97.8 3.8E-06 1.3E-10 69.0 1.0 39 79-117 23-64 (211)
199 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 1E-05 3.4E-10 63.8 3.3 24 81-104 23-46 (149)
200 4ad8_A DNA repair protein RECN 97.8 3.4E-06 1.2E-10 78.9 0.5 33 178-210 399-435 (517)
201 2if2_A Dephospho-COA kinase; a 97.8 1.1E-05 3.6E-10 65.4 3.1 21 83-103 3-23 (204)
202 1j8m_F SRP54, signal recogniti 97.8 8.6E-06 2.9E-10 71.5 2.7 46 75-120 92-138 (297)
203 2qor_A Guanylate kinase; phosp 97.7 1.2E-05 4.2E-10 65.5 2.8 28 79-106 10-37 (204)
204 4a1f_A DNAB helicase, replicat 97.7 6.3E-05 2.2E-09 67.4 7.4 40 79-118 44-84 (338)
205 4eaq_A DTMP kinase, thymidylat 97.7 2.5E-05 8.6E-10 65.6 4.1 29 79-107 24-52 (229)
206 3t61_A Gluconokinase; PSI-biol 97.7 1.9E-05 6.4E-10 64.0 3.1 36 80-118 17-52 (202)
207 1mky_A Probable GTP-binding pr 97.7 1.1E-05 3.9E-10 73.8 1.9 38 81-118 180-230 (439)
208 2gj8_A MNME, tRNA modification 97.6 2.8E-05 9.7E-10 61.4 3.2 26 80-105 3-28 (172)
209 2e87_A Hypothetical protein PH 97.6 1.6E-05 5.3E-10 70.9 1.7 27 79-105 165-191 (357)
210 2ce7_A Cell division protein F 97.6 0.00011 3.7E-09 68.7 7.3 30 74-105 43-73 (476)
211 1ypw_A Transitional endoplasmi 97.6 1.7E-05 6E-10 78.2 1.6 60 76-136 232-292 (806)
212 3qks_A DNA double-strand break 97.6 3.6E-05 1.2E-09 63.4 3.3 23 81-103 23-45 (203)
213 3dm5_A SRP54, signal recogniti 97.5 2.6E-05 8.9E-10 72.3 2.4 42 79-120 98-140 (443)
214 2wji_A Ferrous iron transport 97.5 4.2E-05 1.4E-09 59.6 3.3 25 82-106 4-28 (165)
215 3cm0_A Adenylate kinase; ATP-b 97.5 3.7E-05 1.3E-09 61.1 2.9 25 80-104 3-27 (186)
216 4ad8_A DNA repair protein RECN 97.5 4.2E-05 1.4E-09 71.5 3.7 30 74-104 53-83 (517)
217 1y63_A LMAJ004144AAA protein; 97.5 5.3E-05 1.8E-09 60.8 3.8 30 75-104 3-33 (184)
218 1np6_A Molybdopterin-guanine d 97.5 4E-05 1.4E-09 62.2 2.9 28 81-108 6-33 (174)
219 1ega_A Protein (GTP-binding pr 97.5 4.1E-05 1.4E-09 66.8 2.6 27 79-105 6-32 (301)
220 1q3t_A Cytidylate kinase; nucl 97.5 6.6E-05 2.2E-09 62.6 3.6 27 79-105 14-40 (236)
221 3bh0_A DNAB-like replicative h 97.5 0.00016 5.5E-09 63.4 6.3 46 72-117 58-105 (315)
222 3kb2_A SPBC2 prophage-derived 97.4 6.6E-05 2.3E-09 58.4 3.2 24 83-106 3-26 (173)
223 2wjg_A FEOB, ferrous iron tran 97.4 7E-05 2.4E-09 58.9 3.3 23 82-104 8-30 (188)
224 2zej_A Dardarin, leucine-rich 97.4 7.1E-05 2.4E-09 59.4 3.0 23 83-105 4-26 (184)
225 2ohf_A Protein OLA1, GTP-bindi 97.4 8.9E-05 3E-09 67.8 3.7 26 79-104 20-45 (396)
226 1m2o_B GTP-binding protein SAR 97.4 8.4E-05 2.9E-09 59.4 3.2 33 71-103 13-45 (190)
227 1qhx_A CPT, protein (chloramph 97.4 0.00011 3.9E-09 57.7 3.7 26 81-106 3-28 (178)
228 3lw7_A Adenylate kinase relate 97.4 9.4E-05 3.2E-09 57.1 3.1 19 83-101 3-21 (179)
229 3lxx_A GTPase IMAP family memb 97.3 0.00011 3.8E-09 61.1 3.6 28 80-107 28-55 (239)
230 1kht_A Adenylate kinase; phosp 97.3 0.00012 4.3E-09 57.8 3.5 26 81-106 3-28 (192)
231 2p5t_B PEZT; postsegregational 97.3 9.1E-05 3.1E-09 62.7 2.8 39 79-118 30-68 (253)
232 3p32_A Probable GTPase RV1496/ 97.3 0.00014 4.9E-09 64.7 4.0 41 79-119 77-118 (355)
233 1vht_A Dephospho-COA kinase; s 97.3 0.00014 4.7E-09 59.5 3.5 23 81-103 4-26 (218)
234 2rhm_A Putative kinase; P-loop 97.3 0.00014 4.9E-09 57.7 3.4 26 80-105 4-29 (193)
235 1xjc_A MOBB protein homolog; s 97.3 0.00012 4.1E-09 59.4 2.8 34 82-115 5-39 (169)
236 1gtv_A TMK, thymidylate kinase 97.3 3.6E-05 1.2E-09 62.3 -0.3 26 83-108 2-27 (214)
237 4ag6_A VIRB4 ATPase, type IV s 97.3 0.00014 4.7E-09 65.2 3.4 36 80-115 34-70 (392)
238 1uf9_A TT1252 protein; P-loop, 97.3 0.00016 5.3E-09 57.9 3.4 34 79-116 6-39 (203)
239 2xau_A PRE-mRNA-splicing facto 97.2 0.00022 7.4E-09 70.2 5.0 29 175-203 188-218 (773)
240 2v54_A DTMP kinase, thymidylat 97.2 0.0002 6.8E-09 57.5 3.9 26 80-105 3-28 (204)
241 2jaq_A Deoxyguanosine kinase; 97.2 0.00016 5.4E-09 57.8 3.3 23 83-105 2-24 (205)
242 1ly1_A Polynucleotide kinase; 97.2 0.00017 5.7E-09 56.5 3.3 22 82-103 3-24 (181)
243 1f6b_A SAR1; gtpases, N-termin 97.2 7.1E-05 2.4E-09 60.4 1.1 33 71-103 15-47 (198)
244 1sxj_C Activator 1 40 kDa subu 97.2 7.8E-05 2.7E-09 65.4 1.4 45 71-115 33-81 (340)
245 2ze6_A Isopentenyl transferase 97.2 0.00017 5.7E-09 61.3 3.1 24 82-105 2-25 (253)
246 1via_A Shikimate kinase; struc 97.2 0.00016 5.5E-09 57.1 2.8 23 83-105 6-28 (175)
247 2c95_A Adenylate kinase 1; tra 97.2 0.00024 8.2E-09 56.5 3.6 27 79-105 7-33 (196)
248 2plr_A DTMP kinase, probable t 97.2 0.00023 7.7E-09 57.2 3.5 32 80-111 3-34 (213)
249 3ice_A Transcription terminati 97.1 0.00017 5.7E-09 66.3 2.7 33 74-106 166-199 (422)
250 3iij_A Coilin-interacting nucl 97.1 0.00023 7.7E-09 56.4 3.2 27 79-105 9-35 (180)
251 2wwf_A Thymidilate kinase, put 97.1 0.00025 8.5E-09 57.2 3.5 28 79-106 8-35 (212)
252 1tev_A UMP-CMP kinase; ploop, 97.1 0.00024 8.1E-09 56.2 3.3 25 81-105 3-27 (196)
253 1nn5_A Similar to deoxythymidy 97.1 0.00027 9.1E-09 57.1 3.6 28 79-106 7-34 (215)
254 3trf_A Shikimate kinase, SK; a 97.1 0.00027 9.3E-09 56.0 3.5 26 80-105 4-29 (185)
255 3auy_A DNA double-strand break 97.1 0.00022 7.5E-09 63.8 3.1 36 174-209 277-322 (371)
256 2ga8_A Hypothetical 39.9 kDa p 97.1 8.8E-05 3E-09 67.1 0.3 33 74-106 14-49 (359)
257 3k53_A Ferrous iron transport 97.1 0.00025 8.6E-09 60.3 3.1 24 83-106 5-28 (271)
258 1nks_A Adenylate kinase; therm 97.1 0.00027 9.3E-09 55.8 3.1 25 83-107 3-27 (194)
259 1ex7_A Guanylate kinase; subst 97.1 0.00026 8.9E-09 58.1 3.0 24 83-106 3-26 (186)
260 2lkc_A Translation initiation 97.1 0.00049 1.7E-08 53.3 4.5 28 77-104 4-31 (178)
261 3ake_A Cytidylate kinase; CMP 97.1 0.00022 7.4E-09 57.3 2.4 23 83-105 4-26 (208)
262 3r20_A Cytidylate kinase; stru 97.0 0.00022 7.5E-09 60.6 2.4 26 80-105 8-33 (233)
263 2z0h_A DTMP kinase, thymidylat 97.0 0.00034 1.2E-08 55.6 3.2 27 83-109 2-28 (197)
264 1gvn_B Zeta; postsegregational 97.0 0.0003 1E-08 61.0 3.0 36 79-115 31-66 (287)
265 3auy_A DNA double-strand break 97.0 0.0004 1.4E-08 62.1 3.8 21 82-102 26-46 (371)
266 1lv7_A FTSH; alpha/beta domain 97.0 0.00032 1.1E-08 58.7 2.9 35 83-118 47-81 (257)
267 4fcw_A Chaperone protein CLPB; 97.0 0.00042 1.4E-08 59.2 3.6 33 81-113 47-80 (311)
268 2vli_A Antibiotic resistance p 97.0 0.00029 9.8E-09 55.5 2.4 26 80-105 4-29 (183)
269 2bwj_A Adenylate kinase 5; pho 97.0 0.00043 1.5E-08 55.1 3.3 26 80-105 11-36 (199)
270 1w1w_A Structural maintenance 97.0 0.00055 1.9E-08 62.2 4.3 34 175-208 331-371 (430)
271 2fv8_A H6, RHO-related GTP-bin 96.9 0.00032 1.1E-08 56.6 2.4 32 74-105 17-49 (207)
272 2ged_A SR-beta, signal recogni 96.9 0.00041 1.4E-08 54.8 2.9 26 80-105 47-72 (193)
273 1ukz_A Uridylate kinase; trans 96.9 0.00057 1.9E-08 55.0 3.7 27 79-105 13-39 (203)
274 2pbr_A DTMP kinase, thymidylat 96.9 0.00047 1.6E-08 54.5 3.2 24 83-106 2-25 (195)
275 1aky_A Adenylate kinase; ATP:A 96.9 0.00055 1.9E-08 56.1 3.7 27 79-105 2-28 (220)
276 2nzj_A GTP-binding protein REM 96.9 0.00048 1.6E-08 53.0 3.1 23 83-105 6-28 (175)
277 1jal_A YCHF protein; nucleotid 96.9 0.00065 2.2E-08 61.4 4.3 23 81-103 2-24 (363)
278 2cdn_A Adenylate kinase; phosp 96.9 0.00061 2.1E-08 54.9 3.7 26 80-105 19-44 (201)
279 3fb4_A Adenylate kinase; psych 96.9 0.0005 1.7E-08 55.9 3.2 23 83-105 2-24 (216)
280 1qf9_A UMP/CMP kinase, protein 96.9 0.00049 1.7E-08 54.2 3.1 25 81-105 6-30 (194)
281 1zuh_A Shikimate kinase; alpha 96.9 0.00056 1.9E-08 53.5 3.4 25 81-105 7-31 (168)
282 1z2a_A RAS-related protein RAB 96.9 0.00049 1.7E-08 52.5 2.8 22 83-104 7-28 (168)
283 2erx_A GTP-binding protein DI- 96.9 0.00054 1.9E-08 52.4 3.1 22 83-104 5-26 (172)
284 1e6c_A Shikimate kinase; phosp 96.9 0.00049 1.7E-08 53.7 2.8 24 82-105 3-26 (173)
285 1zd8_A GTP:AMP phosphotransfer 96.9 0.00057 2E-08 56.3 3.4 26 80-105 6-31 (227)
286 3q72_A GTP-binding protein RAD 96.9 0.00044 1.5E-08 52.9 2.5 24 83-106 4-27 (166)
287 2w58_A DNAI, primosome compone 96.9 0.00059 2E-08 54.8 3.4 32 82-113 55-87 (202)
288 1kao_A RAP2A; GTP-binding prot 96.9 0.00052 1.8E-08 52.1 2.9 22 83-104 5-26 (167)
289 2dyk_A GTP-binding protein; GT 96.9 0.00053 1.8E-08 52.1 2.9 23 83-105 3-25 (161)
290 3v9p_A DTMP kinase, thymidylat 96.9 0.00048 1.6E-08 58.2 2.8 29 79-107 23-51 (227)
291 2ce2_X GTPase HRAS; signaling 96.8 0.00051 1.7E-08 51.9 2.7 23 83-105 5-27 (166)
292 2qag_A Septin-2, protein NEDD5 96.8 0.00045 1.5E-08 61.8 2.7 24 83-106 39-62 (361)
293 1u8z_A RAS-related protein RAL 96.8 0.00054 1.9E-08 52.0 2.8 22 83-104 6-27 (168)
294 1fnn_A CDC6P, cell division co 96.8 0.00054 1.8E-08 59.9 3.2 30 79-108 40-71 (389)
295 3q85_A GTP-binding protein REM 96.8 0.0006 2E-08 52.3 3.0 23 83-105 4-26 (169)
296 2pt5_A Shikimate kinase, SK; a 96.8 0.00064 2.2E-08 52.8 3.2 23 83-105 2-24 (168)
297 3dl0_A Adenylate kinase; phosp 96.8 0.00061 2.1E-08 55.5 3.2 23 83-105 2-24 (216)
298 1z0j_A RAB-22, RAS-related pro 96.8 0.00057 2E-08 52.2 2.9 23 83-105 8-30 (170)
299 1fzq_A ADP-ribosylation factor 96.8 0.00049 1.7E-08 54.4 2.5 26 79-104 14-39 (181)
300 3tw8_B RAS-related protein RAB 96.8 0.00054 1.8E-08 52.9 2.7 24 82-105 10-33 (181)
301 1zak_A Adenylate kinase; ATP:A 96.8 0.00061 2.1E-08 55.9 3.1 26 80-105 4-29 (222)
302 3b1v_A Ferrous iron uptake tra 96.8 0.00064 2.2E-08 58.6 3.3 24 82-105 4-27 (272)
303 1ek0_A Protein (GTP-binding pr 96.8 0.0006 2.1E-08 52.0 2.8 23 83-105 5-27 (170)
304 1ky3_A GTP-binding protein YPT 96.8 0.00061 2.1E-08 52.7 2.9 24 82-105 9-32 (182)
305 1z08_A RAS-related protein RAB 96.8 0.00062 2.1E-08 52.2 2.9 22 83-104 8-29 (170)
306 1g16_A RAS-related protein SEC 96.8 0.00058 2E-08 52.2 2.7 23 83-105 5-27 (170)
307 1c1y_A RAS-related protein RAP 96.8 0.00062 2.1E-08 51.9 2.8 22 83-104 5-26 (167)
308 2iyv_A Shikimate kinase, SK; t 96.8 0.00061 2.1E-08 54.0 2.9 24 82-105 3-26 (184)
309 1wms_A RAB-9, RAB9, RAS-relate 96.8 0.00063 2.2E-08 52.6 2.9 23 83-105 9-31 (177)
310 3cf0_A Transitional endoplasmi 96.8 0.00063 2.2E-08 58.9 3.2 36 79-115 47-82 (301)
311 2wsm_A Hydrogenase expression/ 96.8 0.00092 3.2E-08 54.2 4.0 39 80-118 29-67 (221)
312 1svi_A GTP-binding protein YSX 96.8 0.00059 2E-08 53.8 2.7 26 80-105 22-47 (195)
313 3bos_A Putative DNA replicatio 96.8 0.00086 2.9E-08 54.4 3.7 29 79-107 50-78 (242)
314 1moz_A ARL1, ADP-ribosylation 96.8 0.00051 1.7E-08 53.5 2.2 25 79-103 16-40 (183)
315 3pqc_A Probable GTP-binding pr 96.8 0.00061 2.1E-08 53.4 2.7 25 81-105 23-47 (195)
316 3clv_A RAB5 protein, putative; 96.8 0.00067 2.3E-08 53.1 2.9 24 81-104 7-30 (208)
317 2b6h_A ADP-ribosylation factor 96.8 0.00098 3.3E-08 53.2 3.9 27 77-103 25-51 (192)
318 2p5s_A RAS and EF-hand domain 96.8 0.00072 2.5E-08 54.0 3.1 27 79-105 26-52 (199)
319 2cxx_A Probable GTP-binding pr 96.8 0.00063 2.2E-08 53.2 2.7 23 83-105 3-25 (190)
320 2fn4_A P23, RAS-related protei 96.8 0.00066 2.3E-08 52.4 2.8 23 82-104 10-32 (181)
321 2qmh_A HPR kinase/phosphorylas 96.8 0.00058 2E-08 57.1 2.6 29 77-105 30-58 (205)
322 2qby_A CDC6 homolog 1, cell di 96.7 0.00068 2.3E-08 58.9 3.1 29 79-107 43-71 (386)
323 1r2q_A RAS-related protein RAB 96.7 0.00072 2.5E-08 51.6 2.8 22 83-104 8-29 (170)
324 1uj2_A Uridine-cytidine kinase 96.7 0.00081 2.8E-08 56.5 3.4 26 80-105 21-46 (252)
325 3bc1_A RAS-related protein RAB 96.7 0.00075 2.6E-08 52.6 2.8 23 82-104 12-34 (195)
326 2hxs_A RAB-26, RAS-related pro 96.7 0.00088 3E-08 51.8 3.1 24 82-105 7-30 (178)
327 3t1o_A Gliding protein MGLA; G 96.7 0.00082 2.8E-08 52.7 3.0 27 81-107 14-40 (198)
328 1upt_A ARL1, ADP-ribosylation 96.7 0.00079 2.7E-08 51.6 2.8 24 81-104 7-30 (171)
329 2oil_A CATX-8, RAS-related pro 96.7 0.00077 2.6E-08 53.3 2.8 23 82-104 26-48 (193)
330 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0009 3.1E-08 56.7 3.5 27 80-106 3-29 (260)
331 4dsu_A GTPase KRAS, isoform 2B 96.7 0.0008 2.7E-08 52.4 2.9 23 83-105 6-28 (189)
332 2a9k_A RAS-related protein RAL 96.7 0.00085 2.9E-08 52.1 2.8 23 82-104 19-41 (187)
333 2y8e_A RAB-protein 6, GH09086P 96.7 0.00083 2.8E-08 51.7 2.7 23 82-104 15-37 (179)
334 2qu8_A Putative nucleolar GTP- 96.7 0.0012 4E-08 54.2 3.7 25 80-104 28-52 (228)
335 1r8s_A ADP-ribosylation factor 96.7 0.0009 3.1E-08 51.0 2.8 21 83-103 2-22 (164)
336 2atv_A RERG, RAS-like estrogen 96.7 0.001 3.5E-08 52.8 3.3 26 79-104 26-51 (196)
337 3llm_A ATP-dependent RNA helic 96.7 0.0011 3.7E-08 55.1 3.5 25 79-103 74-98 (235)
338 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.7E-08 55.7 3.6 27 79-105 27-53 (243)
339 1z0f_A RAB14, member RAS oncog 96.7 0.0009 3.1E-08 51.5 2.8 24 82-105 16-39 (179)
340 2xb4_A Adenylate kinase; ATP-b 96.6 0.00099 3.4E-08 55.0 3.3 23 83-105 2-24 (223)
341 2g6b_A RAS-related protein RAB 96.6 0.00095 3.2E-08 51.7 2.8 25 81-105 10-34 (180)
342 3lxw_A GTPase IMAP family memb 96.6 0.00096 3.3E-08 56.2 3.0 25 81-105 21-45 (247)
343 3iev_A GTP-binding protein ERA 96.6 0.001 3.6E-08 57.9 3.3 25 80-104 9-33 (308)
344 2grj_A Dephospho-COA kinase; T 96.6 0.0011 3.8E-08 54.3 3.2 25 81-105 12-36 (192)
345 3con_A GTPase NRAS; structural 96.6 0.001 3.4E-08 52.3 2.8 23 82-104 22-44 (190)
346 2efe_B Small GTP-binding prote 96.6 0.001 3.5E-08 51.5 2.9 24 82-105 13-36 (181)
347 3b9p_A CG5977-PA, isoform A; A 96.6 0.0012 4.1E-08 56.2 3.5 28 79-106 52-79 (297)
348 2bme_A RAB4A, RAS-related prot 96.6 0.00097 3.3E-08 52.0 2.7 24 82-105 11-34 (186)
349 1jbk_A CLPB protein; beta barr 96.6 0.0014 4.9E-08 50.6 3.7 28 79-106 41-68 (195)
350 1nrj_B SR-beta, signal recogni 96.6 0.001 3.5E-08 53.7 2.8 25 81-105 12-36 (218)
351 3tkl_A RAS-related protein RAB 96.6 0.0011 3.7E-08 52.2 2.8 24 82-105 17-40 (196)
352 1ypw_A Transitional endoplasmi 96.6 0.00022 7.6E-09 70.3 -1.5 42 76-118 505-547 (806)
353 1a7j_A Phosphoribulokinase; tr 96.6 0.00062 2.1E-08 59.2 1.5 27 80-106 4-30 (290)
354 1wf3_A GTP-binding protein; GT 96.6 0.0012 4E-08 57.6 3.3 23 82-104 8-30 (301)
355 1vg8_A RAS-related protein RAB 96.5 0.0011 3.9E-08 52.6 2.9 25 81-105 8-32 (207)
356 2bov_A RAla, RAS-related prote 96.5 0.0011 3.9E-08 52.5 2.8 23 82-104 15-37 (206)
357 2f6r_A COA synthase, bifunctio 96.5 0.0012 4E-08 56.9 3.1 25 79-103 73-97 (281)
358 1ksh_A ARF-like protein 2; sma 96.5 0.0012 3.9E-08 51.8 2.8 27 79-105 16-42 (186)
359 2gf9_A RAS-related protein RAB 96.5 0.0012 4E-08 52.1 2.8 23 83-105 24-46 (189)
360 2gf0_A GTP-binding protein DI- 96.5 0.0011 3.9E-08 52.2 2.8 24 81-104 8-31 (199)
361 2fg5_A RAB-22B, RAS-related pr 96.5 0.0011 3.9E-08 52.5 2.8 24 82-105 24-47 (192)
362 1e4v_A Adenylate kinase; trans 96.5 0.0013 4.3E-08 53.7 3.1 23 83-105 2-24 (214)
363 3ihw_A Centg3; RAS, centaurin, 96.5 0.0012 4.1E-08 52.4 2.9 24 81-104 20-43 (184)
364 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0011 3.8E-08 52.1 2.7 23 82-104 8-30 (184)
365 3kkq_A RAS-related protein M-R 96.5 0.0012 4.1E-08 51.5 2.8 24 81-104 18-41 (183)
366 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0012 4.2E-08 51.2 2.8 22 83-104 7-28 (186)
367 3cbq_A GTP-binding protein REM 96.5 0.00091 3.1E-08 53.7 2.1 23 82-104 24-46 (195)
368 3be4_A Adenylate kinase; malar 96.5 0.0013 4.6E-08 53.8 3.2 26 80-105 4-29 (217)
369 3iby_A Ferrous iron transport 96.5 0.0013 4.5E-08 55.9 3.1 23 83-105 3-25 (256)
370 3umf_A Adenylate kinase; rossm 96.5 0.0016 5.3E-08 54.6 3.5 27 79-105 27-53 (217)
371 3th5_A RAS-related C3 botulinu 95.5 0.00043 1.5E-08 55.5 0.0 28 76-103 25-52 (204)
372 1zbd_A Rabphilin-3A; G protein 96.5 0.0014 4.8E-08 52.2 3.0 23 83-105 10-32 (203)
373 4edh_A DTMP kinase, thymidylat 96.5 0.0011 3.9E-08 55.1 2.5 31 79-109 4-34 (213)
374 2xtp_A GTPase IMAP family memb 96.5 0.0014 4.9E-08 54.8 3.2 26 80-105 21-46 (260)
375 1ltq_A Polynucleotide kinase; 96.5 0.0015 5E-08 55.9 3.3 22 82-103 3-24 (301)
376 3t5g_A GTP-binding protein RHE 96.5 0.0013 4.4E-08 51.2 2.7 21 83-103 8-28 (181)
377 1ak2_A Adenylate kinase isoenz 96.5 0.0018 6.3E-08 53.6 3.8 29 77-105 12-40 (233)
378 1z06_A RAS-related protein RAB 96.5 0.0014 4.7E-08 51.7 2.9 23 82-104 21-43 (189)
379 2hf9_A Probable hydrogenase ni 96.5 0.0019 6.5E-08 52.5 3.8 39 80-118 37-75 (226)
380 4dhe_A Probable GTP-binding pr 96.5 0.00077 2.6E-08 54.5 1.4 26 80-105 28-53 (223)
381 1x3s_A RAS-related protein RAB 96.5 0.0014 4.8E-08 51.4 2.8 24 82-105 16-39 (195)
382 3oes_A GTPase rhebl1; small GT 96.4 0.0013 4.6E-08 52.5 2.7 25 81-105 24-48 (201)
383 3zvl_A Bifunctional polynucleo 96.4 0.002 6.9E-08 58.6 4.2 30 76-105 252-282 (416)
384 2cjw_A GTP-binding protein GEM 96.4 0.0014 4.8E-08 52.4 2.8 22 82-103 7-28 (192)
385 2a5j_A RAS-related protein RAB 96.4 0.0014 4.9E-08 51.8 2.8 24 82-105 22-45 (191)
386 1zj6_A ADP-ribosylation factor 96.4 0.0016 5.5E-08 51.2 3.1 26 78-103 13-38 (187)
387 2dby_A GTP-binding protein; GD 96.4 0.0013 4.4E-08 59.4 2.8 22 83-104 3-24 (368)
388 3dz8_A RAS-related protein RAB 96.4 0.0014 4.7E-08 51.9 2.7 24 82-105 24-47 (191)
389 2il1_A RAB12; G-protein, GDP, 96.4 0.0014 4.6E-08 52.2 2.6 23 83-105 28-50 (192)
390 1l8q_A Chromosomal replication 96.4 0.0012 4.1E-08 57.2 2.5 29 80-108 36-64 (324)
391 1zd9_A ADP-ribosylation factor 96.4 0.0015 5.1E-08 51.6 2.8 24 81-104 22-45 (188)
392 4bas_A ADP-ribosylation factor 96.4 0.0014 4.8E-08 51.6 2.7 25 80-104 16-40 (199)
393 2o52_A RAS-related protein RAB 96.4 0.0015 5.2E-08 52.3 2.9 23 82-104 26-48 (200)
394 2h92_A Cytidylate kinase; ross 96.4 0.0013 4.5E-08 53.5 2.6 25 81-105 3-27 (219)
395 2h57_A ADP-ribosylation factor 96.4 0.0011 3.8E-08 52.3 2.1 26 80-105 20-45 (190)
396 3bwd_D RAC-like GTP-binding pr 96.4 0.002 6.9E-08 49.9 3.5 26 80-105 7-32 (182)
397 4gzl_A RAS-related C3 botulinu 96.4 0.0016 5.4E-08 52.4 3.0 26 78-103 27-52 (204)
398 3t5d_A Septin-7; GTP-binding p 96.4 0.0013 4.5E-08 56.0 2.6 22 83-104 10-31 (274)
399 3cph_A RAS-related protein SEC 96.4 0.0015 5.2E-08 52.1 2.8 25 80-104 19-43 (213)
400 1v5w_A DMC1, meiotic recombina 96.4 0.0018 6.2E-08 57.3 3.6 26 79-104 120-145 (343)
401 3c5c_A RAS-like protein 12; GD 96.4 0.0015 5.2E-08 51.8 2.8 24 81-104 21-44 (187)
402 2f7s_A C25KG, RAS-related prot 96.4 0.0017 5.8E-08 52.3 3.1 24 82-105 26-49 (217)
403 3a1s_A Iron(II) transport prot 96.4 0.0018 6E-08 55.1 3.3 24 82-105 6-29 (258)
404 2h17_A ADP-ribosylation factor 96.4 0.0014 4.7E-08 51.4 2.4 25 80-104 20-44 (181)
405 3reg_A RHO-like small GTPase; 96.4 0.0016 5.5E-08 51.5 2.8 25 81-105 23-47 (194)
406 2ew1_A RAS-related protein RAB 96.4 0.0015 5.2E-08 52.9 2.7 23 82-104 27-49 (201)
407 2bcg_Y Protein YP2, GTP-bindin 96.4 0.0016 5.3E-08 52.1 2.7 23 82-104 9-31 (206)
408 3i8s_A Ferrous iron transport 96.4 0.0018 6E-08 55.5 3.2 23 83-105 5-27 (274)
409 1jwy_B Dynamin A GTPase domain 96.4 0.0017 5.9E-08 55.7 3.1 25 81-105 24-48 (315)
410 1njg_A DNA polymerase III subu 96.4 0.0019 6.5E-08 51.6 3.2 25 82-106 46-70 (250)
411 2q3h_A RAS homolog gene family 96.3 0.0019 6.5E-08 51.3 3.0 26 79-104 18-43 (201)
412 2iwr_A Centaurin gamma 1; ANK 96.3 0.0013 4.4E-08 51.0 2.0 23 82-104 8-30 (178)
413 3q3j_B RHO-related GTP-binding 96.3 0.0019 6.7E-08 52.5 3.1 25 80-104 26-50 (214)
414 2q6t_A DNAB replication FORK h 96.3 0.015 5.1E-07 53.1 9.3 40 79-118 198-239 (444)
415 2p65_A Hypothetical protein PF 96.3 0.0019 6.4E-08 50.1 2.8 29 79-107 41-69 (187)
416 2j1l_A RHO-related GTP-binding 96.3 0.002 6.8E-08 52.3 3.0 24 81-104 34-57 (214)
417 2fh5_B SR-beta, signal recogni 96.3 0.002 6.7E-08 51.8 2.8 25 81-105 7-31 (214)
418 1gwn_A RHO-related GTP-binding 96.3 0.0019 6.4E-08 52.4 2.7 25 81-105 28-52 (205)
419 3llu_A RAS-related GTP-binding 96.3 0.0022 7.4E-08 51.1 3.0 27 80-106 19-45 (196)
420 2fu5_C RAS-related protein RAB 96.3 0.0013 4.4E-08 51.3 1.6 23 82-104 9-31 (183)
421 3lv8_A DTMP kinase, thymidylat 96.3 0.0025 8.4E-08 54.1 3.5 30 80-109 26-55 (236)
422 2ocp_A DGK, deoxyguanosine kin 96.3 0.0024 8.1E-08 53.1 3.3 27 80-106 1-27 (241)
423 3sr0_A Adenylate kinase; phosp 96.3 0.0023 7.9E-08 52.9 3.2 23 83-105 2-24 (206)
424 2gco_A H9, RHO-related GTP-bin 96.2 0.0021 7.1E-08 51.4 2.7 23 82-104 26-48 (201)
425 2v3c_C SRP54, signal recogniti 96.2 0.0011 3.9E-08 60.9 1.3 40 80-119 98-138 (432)
426 2atx_A Small GTP binding prote 96.2 0.0022 7.5E-08 50.6 2.8 23 82-104 19-41 (194)
427 4tmk_A Protein (thymidylate ki 96.2 0.0028 9.7E-08 52.7 3.5 30 80-109 2-31 (213)
428 2aka_B Dynamin-1; fusion prote 96.2 0.002 6.9E-08 54.6 2.7 26 81-106 26-51 (299)
429 3h4m_A Proteasome-activating n 96.2 0.0029 9.9E-08 53.4 3.5 28 79-106 49-76 (285)
430 2orw_A Thymidine kinase; TMTK, 96.2 0.0031 1.1E-07 51.0 3.5 23 80-102 2-24 (184)
431 2z43_A DNA repair and recombin 96.2 0.0027 9.1E-08 55.6 3.2 26 79-104 105-130 (324)
432 3d3q_A TRNA delta(2)-isopenten 96.2 0.0027 9.1E-08 56.9 3.2 25 82-106 8-32 (340)
433 1p5z_B DCK, deoxycytidine kina 96.1 0.0017 5.9E-08 54.7 1.9 28 79-106 22-49 (263)
434 2hup_A RAS-related protein RAB 96.1 0.0027 9.1E-08 51.0 2.8 24 82-105 30-53 (201)
435 3def_A T7I23.11 protein; chlor 96.1 0.0031 1.1E-07 53.3 3.2 25 81-105 36-60 (262)
436 2g3y_A GTP-binding protein GEM 96.1 0.0031 1.1E-07 52.0 3.1 23 82-104 38-60 (211)
437 1h65_A Chloroplast outer envel 96.1 0.0031 1.1E-07 53.4 3.1 24 82-105 40-63 (270)
438 3tmk_A Thymidylate kinase; pho 96.1 0.0039 1.3E-07 52.1 3.6 29 80-108 4-32 (216)
439 1yrb_A ATP(GTP)binding protein 96.0 0.0046 1.6E-07 51.4 4.0 38 80-118 13-51 (262)
440 3n70_A Transport activator; si 96.0 0.0075 2.6E-07 46.3 4.9 40 79-118 22-62 (145)
441 4djt_A GTP-binding nuclear pro 96.0 0.0013 4.4E-08 53.1 0.5 23 82-104 12-34 (218)
442 2yc2_C IFT27, small RAB-relate 96.0 0.0013 4.4E-08 52.1 0.5 24 81-104 20-43 (208)
443 3cnl_A YLQF, putative uncharac 96.0 0.0037 1.3E-07 53.5 3.5 26 82-107 100-125 (262)
444 3a8t_A Adenylate isopentenyltr 96.0 0.0042 1.4E-07 55.6 3.9 27 80-106 39-65 (339)
445 3cpj_B GTP-binding protein YPT 96.0 0.0032 1.1E-07 51.2 2.9 23 82-104 14-36 (223)
446 3ld9_A DTMP kinase, thymidylat 96.0 0.0042 1.4E-07 52.2 3.5 29 79-107 19-47 (223)
447 2x77_A ADP-ribosylation factor 96.0 0.0028 9.5E-08 49.8 2.3 25 79-103 20-44 (189)
448 3crm_A TRNA delta(2)-isopenten 96.0 0.0037 1.3E-07 55.6 3.3 25 82-106 6-30 (323)
449 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0047 1.6E-07 51.1 3.6 26 81-106 39-64 (262)
450 4dcu_A GTP-binding protein ENG 95.9 0.0031 1.1E-07 57.8 2.7 23 82-104 24-46 (456)
451 2j0v_A RAC-like GTP-binding pr 95.9 0.0035 1.2E-07 50.3 2.7 23 82-104 10-32 (212)
452 1sxj_D Activator 1 41 kDa subu 95.9 0.0034 1.2E-07 54.2 2.8 24 83-106 60-83 (353)
453 2z4s_A Chromosomal replication 95.9 0.0032 1.1E-07 57.6 2.8 25 81-105 130-154 (440)
454 3exa_A TRNA delta(2)-isopenten 95.9 0.0044 1.5E-07 55.1 3.4 26 81-106 3-28 (322)
455 2chg_A Replication factor C sm 95.9 0.0042 1.4E-07 49.1 3.0 23 83-105 40-62 (226)
456 2v1u_A Cell division control p 95.8 0.0042 1.4E-07 53.9 3.0 28 79-106 42-69 (387)
457 1sky_E F1-ATPase, F1-ATP synth 95.8 0.0049 1.7E-07 57.5 3.4 29 79-107 149-177 (473)
458 2zts_A Putative uncharacterize 95.8 0.0057 1.9E-07 50.0 3.4 39 79-117 28-68 (251)
459 3uk6_A RUVB-like 2; hexameric 95.8 0.0076 2.6E-07 52.6 4.4 39 80-118 69-108 (368)
460 3bgw_A DNAB-like replicative h 95.8 0.03 1E-06 51.4 8.6 40 79-118 195-235 (444)
461 4hlc_A DTMP kinase, thymidylat 95.8 0.0065 2.2E-07 50.1 3.6 32 81-112 2-33 (205)
462 1u94_A RECA protein, recombina 95.7 0.0045 1.6E-07 55.5 2.9 38 79-116 61-99 (356)
463 2i1q_A DNA repair and recombin 95.7 0.0048 1.7E-07 53.6 3.0 25 79-103 96-120 (322)
464 1ko7_A HPR kinase/phosphatase; 95.6 0.006 2.1E-07 54.0 3.2 36 79-114 142-182 (314)
465 2r62_A Cell division protease 95.6 0.0025 8.7E-08 53.3 0.8 22 84-105 47-68 (268)
466 3syl_A Protein CBBX; photosynt 95.6 0.0074 2.5E-07 51.3 3.7 27 79-105 65-91 (309)
467 3foz_A TRNA delta(2)-isopenten 95.6 0.0072 2.5E-07 53.6 3.5 26 81-106 10-35 (316)
468 1wxq_A GTP-binding protein; st 95.5 0.0066 2.3E-07 55.1 3.0 23 83-105 2-24 (397)
469 2j37_W Signal recognition part 95.5 0.0079 2.7E-07 56.5 3.6 41 79-119 99-140 (504)
470 3gmt_A Adenylate kinase; ssgci 95.5 0.0073 2.5E-07 51.2 3.0 23 83-105 10-32 (230)
471 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.012 4E-07 51.5 4.4 26 80-105 44-69 (322)
472 1d2n_A N-ethylmaleimide-sensit 95.4 0.0077 2.6E-07 50.7 3.0 26 80-105 63-88 (272)
473 2qby_B CDC6 homolog 3, cell di 95.4 0.0096 3.3E-07 51.9 3.7 27 79-105 43-69 (384)
474 2hjg_A GTP-binding protein ENG 95.4 0.0069 2.4E-07 55.1 2.8 23 83-105 5-27 (436)
475 1puj_A YLQF, conserved hypothe 95.4 0.0093 3.2E-07 51.5 3.4 27 80-106 119-145 (282)
476 3tqf_A HPR(Ser) kinase; transf 95.4 0.0087 3E-07 49.1 3.0 25 79-103 14-38 (181)
477 1ofh_A ATP-dependent HSL prote 95.4 0.0093 3.2E-07 50.4 3.4 27 80-106 49-75 (310)
478 3gj0_A GTP-binding nuclear pro 95.4 0.0053 1.8E-07 49.6 1.7 24 81-104 15-39 (221)
479 3t15_A Ribulose bisphosphate c 95.3 0.011 3.7E-07 51.0 3.6 26 81-106 36-61 (293)
480 2qen_A Walker-type ATPase; unk 95.3 0.011 3.8E-07 50.4 3.5 32 81-115 31-62 (350)
481 2bjv_A PSP operon transcriptio 95.2 0.018 6E-07 48.2 4.6 36 80-115 28-65 (265)
482 3r7w_A Gtpase1, GTP-binding pr 95.2 0.0099 3.4E-07 51.5 3.1 24 81-104 3-26 (307)
483 2b8t_A Thymidine kinase; deoxy 95.2 0.012 4E-07 49.5 3.4 36 79-114 10-46 (223)
484 3e1s_A Exodeoxyribonuclease V, 95.2 0.0086 2.9E-07 56.9 2.8 35 80-114 203-238 (574)
485 3hws_A ATP-dependent CLP prote 95.2 0.0088 3E-07 52.7 2.7 27 80-106 50-76 (363)
486 3eph_A TRNA isopentenyltransfe 95.2 0.0099 3.4E-07 54.5 3.1 24 82-105 3-26 (409)
487 2x2e_A Dynamin-1; nitration, h 95.1 0.0061 2.1E-07 53.9 1.6 24 82-105 32-55 (353)
488 2qgz_A Helicase loader, putati 95.1 0.013 4.5E-07 51.0 3.6 26 81-106 152-177 (308)
489 3d8b_A Fidgetin-like protein 1 95.1 0.014 4.7E-07 51.6 3.8 27 79-105 115-141 (357)
490 3geh_A MNME, tRNA modification 95.1 0.011 3.6E-07 54.8 3.0 24 81-104 224-247 (462)
491 2qpt_A EH domain-containing pr 95.1 0.01 3.5E-07 56.0 2.9 26 80-105 64-89 (550)
492 3pfi_A Holliday junction ATP-d 95.0 0.012 4E-07 50.9 3.0 25 82-106 56-80 (338)
493 2xxa_A Signal recognition part 95.0 0.02 6.9E-07 52.6 4.7 42 79-120 98-141 (433)
494 3l0i_B RAS-related protein RAB 95.0 0.0018 6.2E-08 51.6 -2.1 25 81-105 33-57 (199)
495 3eie_A Vacuolar protein sortin 95.0 0.015 5.1E-07 50.5 3.7 27 80-106 50-76 (322)
496 3pvs_A Replication-associated 95.0 0.01 3.5E-07 54.6 2.6 26 82-107 51-76 (447)
497 3co5_A Putative two-component 95.0 0.0067 2.3E-07 46.5 1.2 27 80-106 26-52 (143)
498 3sjy_A Translation initiation 95.0 0.013 4.5E-07 52.7 3.3 27 80-106 7-33 (403)
499 1tue_A Replication protein E1; 94.9 0.01 3.4E-07 49.9 2.1 28 79-106 56-83 (212)
500 1lnz_A SPO0B-associated GTP-bi 94.9 0.0088 3E-07 53.3 1.8 22 83-104 160-181 (342)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.5e-33 Score=246.10 Aligned_cols=145 Identities=17% Similarity=0.069 Sum_probs=116.5
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCC--ChHHHhhccEEecCchH--
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~-- 138 (222)
|.+...++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++... +..+++++||||||++.
T Consensus 17 y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~ 96 (275)
T 3gfo_A 17 YSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ 96 (275)
T ss_dssp CTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGT
T ss_pred ECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccc
Confidence 43334578999999 999999999999999999999999999998 9999999998421 22355678999999863
Q ss_pred -------HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 -------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 -------~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+++.++.... ....+..+++.++++.+++....++.+.+ ||||||||+|||||+ +|+||||| ||+|+|.
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~ 176 (275)
T 3gfo_A 97 LFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176 (275)
T ss_dssp CCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCH
T ss_pred cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 4444432211 12233446788899999999889999999 999999999999999 99999999 6677775
Q ss_pred Cc
Q 027509 208 PR 209 (222)
Q Consensus 208 p~ 209 (222)
..
T Consensus 177 ~~ 178 (275)
T 3gfo_A 177 MG 178 (275)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.98 E-value=2.4e-32 Score=234.13 Aligned_cols=139 Identities=19% Similarity=0.095 Sum_probs=112.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH----hhccEEecCchH-----
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI----- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~----~~~ig~v~Q~~~----- 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+. ++.++||||++.
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 478899999 999999999999999999999999999998 999999999876665442 346999999865
Q ss_pred ---HHHHhcCCC----CcchHHHHHHHHHHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 ---RAVETGGCP----HAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 ---~~i~~g~~~----~~~~~~~~~~~~~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+|+.++... .....+....+.++++.+++... .++++.+ ||||||||+|||||+ +|+|+||| |++|+|.
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 455443211 11223344667888999998765 4888999 999999999999999 99999999 6667774
Q ss_pred C
Q 027509 208 P 208 (222)
Q Consensus 208 p 208 (222)
.
T Consensus 179 ~ 179 (235)
T 3tif_A 179 K 179 (235)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=2.4e-32 Score=248.77 Aligned_cols=139 Identities=17% Similarity=0.096 Sum_probs=116.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---HhhccEEecCchH------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------ 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~~~~ig~v~Q~~~------ 138 (222)
.++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.++|.++...+..+ ++++||||||++.
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence 478899999 999999999999999999999999999999 99999999997766544 3568999999875
Q ss_pred --HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 --~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+|+.++... .....+..+++.++|+.+++....++++.+ ||||||||+|||||+ +|+||||| ||+++|..
T Consensus 122 V~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~ 197 (366)
T 3tui_C 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197 (366)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 455443211 112234456788899999999999999999 999999999999999 99999999 66677643
No 4
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=8.5e-33 Score=250.82 Aligned_cols=146 Identities=17% Similarity=0.123 Sum_probs=116.9
Q ss_pred CCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---
Q 027509 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--- 138 (222)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--- 138 (222)
+|.++..++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.++|.++..... .+++|+||||++.
T Consensus 23 ~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~ 100 (355)
T 1z47_A 23 IYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQ 100 (355)
T ss_dssp CCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECGGGCCCT
T ss_pred EEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEecCcccCC
Confidence 442234578899999 999999999999999999999999999998 999999998865433 3568999999864
Q ss_pred -----HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 -----RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 -----~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+|+.++... .....+..+++.++++.+++....++++.+ ||||||||+|||||+ +|+||||| |++++|...
T Consensus 101 ~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 180 (355)
T 1z47_A 101 HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180 (355)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 555543211 111223345678899999999889999999 999999999999999 99999999 667777654
Q ss_pred cC
Q 027509 210 KG 211 (222)
Q Consensus 210 K~ 211 (222)
+.
T Consensus 181 r~ 182 (355)
T 1z47_A 181 RR 182 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 5
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=8.5e-32 Score=233.37 Aligned_cols=140 Identities=19% Similarity=0.137 Sum_probs=114.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH-HHhhccEEecCchH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~-e~~~~ig~v~Q~~~------- 138 (222)
..++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.++|.++...+.. ..++.++||||++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV 99 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcH
Confidence 3478899999 999999999999999999999999999998 9999999988654433 34567999999864
Q ss_pred -HHHHhcCCC-C-------------cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-
Q 027509 139 -RAVETGGCP-H-------------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (222)
Q Consensus 139 -~~i~~g~~~-~-------------~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD- 200 (222)
+++.++... . ....+....+.++++.+++....++.+.+ ||||||||+|||||+ +|+|+|||
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE 179 (257)
T 1g6h_A 100 LENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179 (257)
T ss_dssp HHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred HHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 566554322 1 11123345678899999998888999999 999999999999999 99999999
Q ss_pred cCCCCCCC
Q 027509 201 VSGGDKIP 208 (222)
Q Consensus 201 ~t~G~d~p 208 (222)
|++|+|..
T Consensus 180 Pts~LD~~ 187 (257)
T 1g6h_A 180 PIAGVAPG 187 (257)
T ss_dssp TTTTCCHH
T ss_pred CccCCCHH
Confidence 67777754
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=5.8e-32 Score=235.93 Aligned_cols=141 Identities=14% Similarity=0.081 Sum_probs=113.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCC--CCChHHHhhccEEecCchH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI------ 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~--~~~~~e~~~~ig~v~Q~~~------ 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++. .....+++++|+||||++.
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 116 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMT 116 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSC
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCC
Confidence 3578899999 999999999999999999999999999998 99999999874 2233455678999999853
Q ss_pred --HHHHhcC--CCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 --RAVETGG--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 --~~i~~g~--~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++. .......+..+++.++++.+++....++.+.+ ||||||||+|||||+ +|+|+||| |++|+|...
T Consensus 117 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~ 194 (263)
T 2olj_A 117 VLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 194 (263)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 4554431 11111222345677899999998888999999 999999999999999 99999999 667777543
No 7
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=5.2e-32 Score=232.56 Aligned_cols=141 Identities=19% Similarity=0.119 Sum_probs=112.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH-------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~------- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++ +++++||||++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 98 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV 98 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcH
Confidence 3478899999 999999999999999999999999999998 999999999865555444 345999999864
Q ss_pred -HHHHhcCCCCcchHHHHHHHHHHHHhcC-CcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 -RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 -~~i~~g~~~~~~~~~~~~~~~~~L~~l~-l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++........+..+.+.++++.++ +....++.+.+ |||||||++|||||+ +|+|+||| |++|+|...
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 174 (240)
T 1ji0_A 99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174 (240)
T ss_dssp HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 5666653222111223345667788884 77778888999 999999999999999 99999999 666777543
No 8
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=6e-32 Score=245.59 Aligned_cols=143 Identities=22% Similarity=0.177 Sum_probs=117.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCC--ChHHHhhccEEecCchH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI------ 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~--~~~e~~~~ig~v~Q~~~------ 138 (222)
..++++++|+ ++||+++|+||||||||||||+|+|+++|+ |+|.++|.++... .....+++||||||++.
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~lt 96 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT 96 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCC
Confidence 4578899999 999999999999999999999999999998 9999999987321 11234568999999864
Q ss_pred --HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 139 --RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 139 --~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
+|+.++.... ....+..+++.++|+.+++....++++.+ ||||||||+|||||+ +|+||||| |++++|...+.
T Consensus 97 V~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~ 175 (359)
T 3fvq_A 97 VYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRR 175 (359)
T ss_dssp HHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 6777664322 12234456788899999999999999999 999999999999999 99999999 66777765443
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=8.6e-32 Score=234.97 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=117.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|+||++.
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVS 103 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHH
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHH
Confidence 4578899999 999999999999999999999999999998 999999999987777777788999999764
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-------CCCeEEEe-cCCCCCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-------~p~IlILD-~t~G~d~p 208 (222)
+++.++.... ...+..+.+.++++.+++....++.+.+ ||||||||+|||||+ +|+|+||| ||+|+|..
T Consensus 104 e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 104 EVIQMGRAPY-GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp HHHHGGGTTS-CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred HHHHhhhhhc-CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 5666654322 1122345677889999998888999999 999999999999998 79999999 66777754
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=8.2e-32 Score=229.15 Aligned_cols=140 Identities=19% Similarity=0.116 Sum_probs=112.1
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH---Hh-hccEEecCchH----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI---- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e---~~-~~ig~v~Q~~~---- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ ++ +.++||||++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE 96 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC
Confidence 3478899999 999999999999999999999999999998 99999999886544432 23 57999999864
Q ss_pred ----HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 ----~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+++.++... .....+..+.+.++++.+++....++.+.+ |||||||++|||||+ +|+|+||| |++|+|..
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (224)
T 2pcj_A 97 LTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174 (224)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHH
T ss_pred CCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 444432110 111123345677899999998888999999 999999999999999 99999999 66677754
No 11
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=1.6e-31 Score=234.90 Aligned_cols=141 Identities=15% Similarity=0.063 Sum_probs=113.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCC--CCChHHHhhccEEecCchH------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI------ 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~--~~~~~e~~~~ig~v~Q~~~------ 138 (222)
..++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.++|.++. ..+..++++.|+||||++.
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEG 113 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTT
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCC
Confidence 4578899999 999999999999999999999999999998 99999999885 4455566778999999753
Q ss_pred ----HHHHhcCCCCc-----chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 ----RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 ----~~i~~g~~~~~-----~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++.++..... ...+..+++.++++.+++....++.+.+ ||||||||+|||||+ +|+||||| |++|+|
T Consensus 114 ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD 193 (279)
T 2ihy_A 114 ERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193 (279)
T ss_dssp SBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred CCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 44544422110 1122345677889999998888999999 999999999999999 99999999 666777
Q ss_pred CCc
Q 027509 207 IPR 209 (222)
Q Consensus 207 ~p~ 209 (222)
...
T Consensus 194 ~~~ 196 (279)
T 2ihy_A 194 FIA 196 (279)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=1.5e-31 Score=232.42 Aligned_cols=140 Identities=18% Similarity=0.118 Sum_probs=112.9
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ...++++.|+||||++.
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~ 106 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGI 106 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTTSBHH
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCCCCCCCCcHH
Confidence 4578899999 999999999999999999999999999998 999999998854 34556678999999864
Q ss_pred HHHHhcCC-CCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ~~i~~g~~-~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++.. ......+....+.++++.+++....++.+.+ |||||||++|||||+ +|+||||| |++|+|...
T Consensus 107 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~ 181 (256)
T 1vpl_A 107 EYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181 (256)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHH
Confidence 44443211 0111122234667889999998888999999 999999999999999 99999999 666777543
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=1.8e-31 Score=232.25 Aligned_cols=140 Identities=12% Similarity=0.086 Sum_probs=112.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC----------CCh---HHHhhccEEe
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----------KED---GEFLMRNGAL 133 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~----------~~~---~e~~~~ig~v 133 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. .+. .++++.++||
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 98 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV 98 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEE
Confidence 3478899999 999999999999999999999999999998 999999998741 222 2346679999
Q ss_pred cCchH--------HHHHhcC--CCCcchHHHHHHHHHHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe
Q 027509 134 PEERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (222)
Q Consensus 134 ~Q~~~--------~~i~~g~--~~~~~~~~~~~~~~~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD 200 (222)
||++. +++.++. .......+...++.++++.+++... .++.+.+ ||||||||+|||||+ +|+|||||
T Consensus 99 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD 178 (262)
T 1b0u_A 99 FQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD 178 (262)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred ecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99853 4554431 1111112234567789999999888 8999999 999999999999999 99999999
Q ss_pred -cCCCCCCC
Q 027509 201 -VSGGDKIP 208 (222)
Q Consensus 201 -~t~G~d~p 208 (222)
|++|+|..
T Consensus 179 EPts~LD~~ 187 (262)
T 1b0u_A 179 EPTSALDPE 187 (262)
T ss_dssp STTTTSCHH
T ss_pred CCCccCCHH
Confidence 66677754
No 14
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.97 E-value=2.1e-32 Score=232.14 Aligned_cols=134 Identities=22% Similarity=0.204 Sum_probs=108.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++. ++++.++||||++. +
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCCcCCCCCCHHH
Confidence 578999999 999999999999999999999999999998 99999998874 24678999999864 4
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
++.++...... ......+.++++.+++... ++.+.+ |+|||||++|||||+ +|+|+||| |++|+|...+
T Consensus 98 nl~~~~~~~~~-~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~ 169 (214)
T 1sgw_A 98 YLKAVASLYGV-KVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169 (214)
T ss_dssp HHHHHHHHTTC-CCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTH
T ss_pred HHHHHHHhcCC-chHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 44332110000 0013456778899998877 888888 999999999999999 99999999 7777876554
No 15
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=1.6e-31 Score=244.42 Aligned_cols=140 Identities=15% Similarity=0.042 Sum_probs=115.6
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++||+++|+||||||||||||+|+|+++|+ |+|.++|.++...+.. +++|+||||++.
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVA 93 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTSCHH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCCCHH
Confidence 3478899999 999999999999999999999999999999 9999999998765443 467999999864
Q ss_pred HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+|+.++... .....+..+++.++++.+++....++++.+ ||||||||+|||||+ +|+||||| |++++|...+
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~ 169 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 455443211 112233446788899999999999999999 999999999999999 99999999 6677775543
No 16
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.97 E-value=1.1e-31 Score=231.71 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=106.0
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
+..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.|+||||++.
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 100 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 100 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHH
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHH
Confidence 34578999999 999999999999999999999999999998 999999999876666667778999999864
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCccc-----------ccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~-----------~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+|+.++. +... ...+.++++.+++... .+..+.+ |||||||++|||||+ +|+|+||| |+++
T Consensus 101 enl~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~ 175 (247)
T 2ff7_A 101 DNISLAN-PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 175 (247)
T ss_dssp HHHTTTC-TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSC
T ss_pred HHHhccC-CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 5555442 1111 1223344555554433 3344567 999999999999999 99999999 6777
Q ss_pred CCCC
Q 027509 205 DKIP 208 (222)
Q Consensus 205 ~d~p 208 (222)
+|..
T Consensus 176 LD~~ 179 (247)
T 2ff7_A 176 LDYE 179 (247)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 7754
No 17
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=3.6e-31 Score=227.53 Aligned_cols=139 Identities=13% Similarity=0.111 Sum_probs=108.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.++||||++. +
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 94 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE 94 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHH
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHH
Confidence 4578999999 999999999999999999999999999998 999999998865444455678999999864 4
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccC-----------cCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~-----------~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++..+... ...+.++++.+++....++ .+.+ |||||||++|||||+ +|+|+||| |++|+
T Consensus 95 nl~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~L 170 (243)
T 1mv5_A 95 NLTYGLEGDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASL 170 (243)
T ss_dssp HTTSCTTSCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSS
T ss_pred HHhhhccCCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 55444222111 1234556666666544433 3457 999999999999999 99999999 77788
Q ss_pred CCCccC
Q 027509 206 KIPRKG 211 (222)
Q Consensus 206 d~p~K~ 211 (222)
|...+.
T Consensus 171 D~~~~~ 176 (243)
T 1mv5_A 171 DSESES 176 (243)
T ss_dssp CSSSCC
T ss_pred CHHHHH
Confidence 876654
No 18
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=5.9e-31 Score=230.10 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=110.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.|+||||++. +
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 111 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE 111 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHH
Confidence 4578999999 999999999999999999999999999998 999999998865555566778999999864 5
Q ss_pred HHHhcCCCCcchHH---H--HHHHHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 140 AVETGGCPHAAIRE---D--ISINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 140 ~i~~g~~~~~~~~~---~--~~~~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
|+.++........+ . ...+.+.++.+ ++....++.+.+ |||||||++|||||+ +|+||||| |++|+|...
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~ 191 (271)
T 2ixe_A 112 NIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191 (271)
T ss_dssp HHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred HHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 66665322111011 1 11234566766 566667888888 999999999999999 99999999 777777543
No 19
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=3.5e-31 Score=240.56 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=114.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.++|.++...... +++|+||||++. +
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e 94 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFE 94 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCCCCTTSCHHH
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHH
Confidence 467899999 999999999999999999999999999998 9999999998654432 467999999864 6
Q ss_pred HHHhcCCCCcch-HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~~~~-~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
|+.++....... .+..+++.++++.+++....++++.+ ||||||||+|||||+ +|+|+||| |++++|...+
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 169 (359)
T 2yyz_A 95 NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169 (359)
T ss_dssp HHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 666653321111 12235678899999999889999999 999999999999999 99999999 6677776544
No 20
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=2.9e-31 Score=240.46 Aligned_cols=141 Identities=16% Similarity=0.065 Sum_probs=115.6
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC---hHHHhhccEEecCchH-------
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI------- 138 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~---~~e~~~~ig~v~Q~~~------- 138 (222)
++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.++|.++...+ ....+++|+||||++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 67899999 999999999999999999999999999998 99999998874310 1223568999999864
Q ss_pred -HHHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCccC
Q 027509 139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKG 211 (222)
Q Consensus 139 -~~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K~ 211 (222)
+|+.++.... ....+..+++.++++.+++....++++.+ ||||||||+|||||+ +|+||||| |++++|...+.
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~ 177 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 6666653321 12223346788899999999889999999 999999999999999 99999999 77778876554
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=5.2e-31 Score=229.64 Aligned_cols=137 Identities=13% Similarity=0.044 Sum_probs=111.4
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH---------
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------- 138 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. . ++++.++||||++.
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~--~-~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--Y-EIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH--H-HHGGGEEEECSSGGGGCCCSSHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch--H-HhhhhEEEEeccchhhcCCCcHH
Confidence 478899999 999999999999999999999999999998 999999988742 2 55678999999852
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCc--ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~--~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++........+...++.++++.+++. ...++.+.+ |||||||++|||||+ +|+|+||| |++|+|...
T Consensus 98 enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~ 173 (266)
T 2yz2_A 98 DEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173 (266)
T ss_dssp HHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHH
Confidence 556554321111111234567789999998 888999999 999999999999999 99999999 667777543
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=6.2e-31 Score=239.89 Aligned_cols=139 Identities=12% Similarity=-0.010 Sum_probs=113.0
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------H
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~ 139 (222)
.++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.++|.++...... +++|+||||++. +
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e 102 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYE 102 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHH
Confidence 467899999 999999999999999999999999999998 9999999998654432 467999999864 5
Q ss_pred HHHhcCCCC-cchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 140 ~i~~g~~~~-~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
|+.++.... ....+..+++.++++.+++....++++.+ ||||||||+|||||+ +|+||||| |++++|...+
T Consensus 103 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 177 (372)
T 1v43_A 103 NIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 177 (372)
T ss_dssp HHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 666653221 12223346788899999999899999999 999999999999999 99999999 6667776544
No 23
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=5e-31 Score=234.85 Aligned_cols=141 Identities=14% Similarity=0.243 Sum_probs=107.6
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|....+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++|+||||++.
T Consensus 63 y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 142 (306)
T 3nh6_A 63 YADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142 (306)
T ss_dssp SSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE
T ss_pred cCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcc
Confidence 43345678999999 999999999999999999999999999998 999999999988777888889999999875
Q ss_pred ---HHHHhcCCCCcchHHHHHHH------HHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 ---RAVETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~------~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+|+.++.... .. +....+ .+.+..+ ++.........+ |||||||++|||||+ +|+||||| ||++
T Consensus 143 Tv~eNi~~~~~~~-~~-~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~ 220 (306)
T 3nh6_A 143 TIADNIRYGRVTA-GN-DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSA 220 (306)
T ss_dssp EHHHHHHTTSTTC-CH-HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSC
T ss_pred cHHHHHHhhcccC-CH-HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 6777664321 11 111111 1122222 222233444556 999999999999999 99999999 6666
Q ss_pred CCC
Q 027509 205 DKI 207 (222)
Q Consensus 205 ~d~ 207 (222)
+|.
T Consensus 221 LD~ 223 (306)
T 3nh6_A 221 LDT 223 (306)
T ss_dssp CCH
T ss_pred CCH
Confidence 664
No 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=2.4e-31 Score=240.71 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=111.1
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~ 140 (222)
++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.++|.++..... .+++|+||||++. +|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCHHHH
Confidence 78899999 999999999999999999999999999998 999999999865333 3578999999853 44
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+.++.... ...+. +++.++++.+++....++++.+ ||||||||+|||||+ +|+||||| |++++|...+
T Consensus 93 l~~~~~~~-~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~ 163 (348)
T 3d31_A 93 LEFGMRMK-KIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ 163 (348)
T ss_dssp HHHHHHHH-CCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHH
T ss_pred HHHHHHHc-CCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 44431100 00001 4677889999999889999999 999999999999999 99999999 6677776544
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=1e-30 Score=225.04 Aligned_cols=135 Identities=18% Similarity=0.152 Sum_probs=110.3
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~ 140 (222)
.+++++|+ ++ ++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ..+++++||||++. ++
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHHHH
Confidence 37889999 89 999999999999999999999999998 99999999885422 23567999999864 55
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+.++.... ......+++.++++.+++....++.+.+ |||||||++|||||+ +|+|+||| |++|+|...
T Consensus 91 l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~ 161 (240)
T 2onk_A 91 IAYGLRNV-ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp HHTTCTTS-CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHHHHHc-CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 65543211 1222345677899999998888999999 999999999999999 99999999 667777543
No 26
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=4.2e-31 Score=240.22 Aligned_cols=140 Identities=13% Similarity=0.068 Sum_probs=114.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.++|.++...... +++|+||||++.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCCCCTTSCHH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcccCCCCCHH
Confidence 3478899999 999999999999999999999999999998 9999999998654432 467999999864
Q ss_pred HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+|+.++... .....+..+++.++++.+++....++++.+ ||||||||+|||||+ +|+|+||| |++++|...+
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 169 (362)
T 2it1_A 94 KNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR 169 (362)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 555554211 111122345678899999999889999999 999999999999999 99999999 6777776544
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=1.2e-30 Score=225.79 Aligned_cols=135 Identities=11% Similarity=0.073 Sum_probs=113.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH--------HH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~ 140 (222)
.++++++|+ ++|++++|+|||||||||||++|+|+++|+|+|.++|.++...+..+++++++||||++. ++
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 467899999 999999999999999999999999999888999999998865556667778999999864 55
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCC-------eEEEe-cCCCCCCC
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI-------IYIID-VSGGDKIP 208 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~-------IlILD-~t~G~d~p 208 (222)
+.++...... ...+.++++.+++....++.+.+ |||||||++|||||+ +|+ |+||| |++|+|..
T Consensus 94 l~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~ 167 (249)
T 2qi9_C 94 LTLHQHDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 167 (249)
T ss_dssp HHTTCSSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHH
T ss_pred HHHhhccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHH
Confidence 5554322211 34567789999998888999999 999999999999999 999 99999 66777754
No 28
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.96 E-value=7.8e-31 Score=239.16 Aligned_cols=140 Identities=11% Similarity=-0.018 Sum_probs=113.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC------CChHHHhhccEEecCchH---
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERI--- 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~------~~~~e~~~~ig~v~Q~~~--- 138 (222)
.++++++|+ ++|++++|+||||||||||||+|+|+++|+ |+|.++|.++.. ... .+++|+||||++.
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r~ig~v~Q~~~l~~ 94 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDRDIAMVFQSYALYP 94 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGSSEEEECSCCCCCT
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHCCEEEEeCCCccCC
Confidence 467899999 999999999999999999999999999998 999999988743 222 2467999999854
Q ss_pred -----HHHHhcCCC-CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 -----RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 -----~~i~~g~~~-~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+|+.++... .....+..+++.++++.+++....++++.+ ||||||||+|||||+ +|+||||| |++++|...
T Consensus 95 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 174 (372)
T 1g29_1 95 HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174 (372)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 555554211 111122345678899999999889999999 999999999999999 99999999 666777654
Q ss_pred cC
Q 027509 210 KG 211 (222)
Q Consensus 210 K~ 211 (222)
+.
T Consensus 175 r~ 176 (372)
T 1g29_1 175 RV 176 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 29
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.96 E-value=1.7e-29 Score=219.58 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=104.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH-------HH
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~ 140 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+|+|.++|.++...+..++++.|+||||++. +|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 112 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYN 112 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHH
Confidence 3578899999 999999999999999999999999999877999999998865555666778999999864 56
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCccc-----------ccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~-----------~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+.++... .. . ..+.++++.+++... .++.+.+ |||||||++|||||+ +|+||||| |++++|
T Consensus 113 l~~~~~~-~~-~---~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 187 (260)
T 2ghi_A 113 ILYGKLD-AT-D---EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187 (260)
T ss_dssp HHTTCTT-CC-H---HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC
T ss_pred HhccCCC-CC-H---HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 6654321 11 1 123334444443221 2345667 999999999999999 99999999 667777
Q ss_pred CCc
Q 027509 207 IPR 209 (222)
Q Consensus 207 ~p~ 209 (222)
...
T Consensus 188 ~~~ 190 (260)
T 2ghi_A 188 SKT 190 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.96 E-value=2e-29 Score=219.80 Aligned_cols=141 Identities=13% Similarity=0.013 Sum_probs=108.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc--CCC-CcEEEeeccCCCCChHHH-hhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll--~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~----- 138 (222)
..++++++|+ ++|++++|+||||||||||||+|+|++ +|+ |+|.++|.++...+..++ ++.++||||++.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~ 112 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGV 112 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccc
Confidence 4578899999 999999999999999999999999994 677 999999998865444443 346999999863
Q ss_pred ---HHHHhcC--------CCCcchHHHHHHHHHHHHhcCCc-ccccCcCC-C-ChHHHHHHHHHHHHc-CCCeEEEe-cC
Q 027509 139 ---RAVETGG--------CPHAAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 139 ---~~i~~g~--------~~~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~-e-SgGqkQrv~iArAL~-~p~IlILD-~t 202 (222)
+++.+.. .+.....+....+.++++.+++. ...++.+. + |||||||++|||||+ +|+||||| |+
T Consensus 113 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPt 192 (267)
T 2zu0_C 113 SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 192 (267)
T ss_dssp BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 3332211 11111122235677889999986 46788876 5 999999999999999 99999999 66
Q ss_pred CCCCCCc
Q 027509 203 GGDKIPR 209 (222)
Q Consensus 203 ~G~d~p~ 209 (222)
+|+|...
T Consensus 193 s~LD~~~ 199 (267)
T 2zu0_C 193 SGLDIDA 199 (267)
T ss_dssp TTCCHHH
T ss_pred CCCCHHH
Confidence 7777543
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.96 E-value=1.2e-29 Score=218.96 Aligned_cols=140 Identities=16% Similarity=0.059 Sum_probs=106.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcC--cCCC-CcEEEeeccCCCCChHHH-hhccEEecCchH-----
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI----- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gl--l~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~~----- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+ ++|+ |+|.++|.++...+..+. +..++|+||++.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 3478899999 99999999999999999999999998 7787 999999999865554444 345899999864
Q ss_pred ---HHHHhcCCC--C--cchHHHHHHHHHHHHhcCC-cccccCcCCC--ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 139 ---RAVETGGCP--H--AAIREDISINLGPLEELSN-LFKADLLLCE--SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 139 ---~~i~~g~~~--~--~~~~~~~~~~~~~L~~l~l-~~~~d~~~~e--SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
+++.++... . ....+....+.++++.+++ ....++.+.+ |||||||++|||||+ +|+|+||| |++|+|
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 175 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175 (250)
T ss_dssp BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 344332100 0 1112233566778999998 4667887775 999999999999999 99999999 777777
Q ss_pred CC
Q 027509 207 IP 208 (222)
Q Consensus 207 ~p 208 (222)
..
T Consensus 176 ~~ 177 (250)
T 2d2e_A 176 ID 177 (250)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 32
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=1.5e-29 Score=219.12 Aligned_cols=128 Identities=19% Similarity=0.226 Sum_probs=104.7
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------- 138 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|. +++.++||||++.
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEcCCCccCCCCCHH
Confidence 3578899999 999999999999999999999999999998 9998 1356999999764
Q ss_pred HHHHhcCCCCc-----chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 139 RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 139 ~~i~~g~~~~~-----~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+++.++..... ...+...++.++++.+++....++.+.+ |||||||++|||||+ +|+|+||| |++|+|...
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 163 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN 163 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHH
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 56655432110 1123345677899999998888999999 999999999999999 99999999 666777543
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.5e-29 Score=229.60 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=109.3
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
...++++++|+ ++||+++|+|||||||||||++|+|+++ + |+|.++|.++...+..+++++|+||||++.
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~ 111 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFR 111 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHH
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHH
Confidence 35678999999 9999999999999999999999999998 6 999999999987777777889999999864
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCC-----------C-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLC-----------E-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~-----------e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+|+.+... . ..+.+.++++.+++....++++. + ||||||||+|||||+ +|+||||| |+++
T Consensus 112 enl~~~~~---~---~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~ 185 (390)
T 3gd7_A 112 KNLDPNAA---H---SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185 (390)
T ss_dssp HHHCTTCC---S---CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHH
T ss_pred HHhhhccc---c---CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 34432111 1 12345678888888776676664 2 999999999999999 99999999 5667
Q ss_pred CCCC
Q 027509 205 DKIP 208 (222)
Q Consensus 205 ~d~p 208 (222)
+|..
T Consensus 186 LD~~ 189 (390)
T 3gd7_A 186 LDPV 189 (390)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 7643
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=211.49 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=94.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++| .++||||++. +
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~~~~~tv~e 84 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQAWIQNDSLRE 84 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEECSSCCCCSEEHHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEcCCCcCCCcCHHH
Confidence 4578899999 999999999999999999999999999998 9999987 3899999864 5
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCc-----ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNL-----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-----~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
|+.++........+......+.++.+++. ...++.+.+ |||||||++|||||+ +|+|+||| |++++|..
T Consensus 85 nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 85 NILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred HhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 66654321111111111111122233321 124667778 999999999999999 99999999 66677754
No 35
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=3e-28 Score=232.46 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=107.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++++||||++. +
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 435 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIAN 435 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHH
Confidence 4678999999 999999999999999999999999999998 999999999877666777889999999975 5
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccC-----------cCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~-----------~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++..+... .+.+.++++.+++....++ ...+ |||||||++|||||+ +|+|+||| ||+++
T Consensus 436 ni~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~L 511 (582)
T 3b5x_A 436 NIAYAAEGEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511 (582)
T ss_pred HHhccCCCCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 66665322221 1234455555555433332 3356 999999999999999 99999999 66666
Q ss_pred CCC
Q 027509 206 KIP 208 (222)
Q Consensus 206 d~p 208 (222)
|..
T Consensus 512 D~~ 514 (582)
T 3b5x_A 512 DTE 514 (582)
T ss_pred CHH
Confidence 643
No 36
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.95 E-value=3.2e-28 Score=232.25 Aligned_cols=135 Identities=14% Similarity=0.096 Sum_probs=107.3
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++++||||++. +
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 435 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN 435 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHH
Confidence 5678999999 999999999999999999999999999998 999999999977667777889999999875 6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCccc-----------ccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~-----------~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++..+... .+.+.++++.+++... ......+ |||||||++|||||+ +|+|+||| ||+++
T Consensus 436 ni~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~L 511 (582)
T 3b60_A 436 NIAYARTEEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511 (582)
T ss_dssp HHHTTTTSCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSC
T ss_pred HHhccCCCCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccC
Confidence 77775422221 1234445555554332 2333456 999999999999999 99999999 56666
Q ss_pred CC
Q 027509 206 KI 207 (222)
Q Consensus 206 d~ 207 (222)
|.
T Consensus 512 D~ 513 (582)
T 3b60_A 512 DT 513 (582)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=5.5e-29 Score=217.11 Aligned_cols=132 Identities=23% Similarity=0.128 Sum_probs=105.7
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccE-EecCchH------HH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG-ALPEERI------RA 140 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig-~v~Q~~~------~~ 140 (222)
.++++++|+ + |++++|+|||||||||||++|+|++ |+ |+|.++|.++... .. +++++ ||||++. ++
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l~~tv~en 93 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEIGVTVNDI 93 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCTTSBHHHH
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCccCCcHHHH
Confidence 467899999 9 9999999999999999999999999 98 9999999887532 22 56799 9999863 33
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+.++.... . .....+.++++.+++. ...++.+.+ |+|||||++|||||+ +|+|+||| |++++|...
T Consensus 94 l~~~~~~~-~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 163 (263)
T 2pjz_A 94 VYLYEELK-G--LDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163 (263)
T ss_dssp HHHHHHHT-C--CCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHH
T ss_pred HHHhhhhc-c--hHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHH
Confidence 33321000 0 0123567789999998 888999999 999999999999999 99999999 667777543
No 38
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=5.3e-28 Score=206.21 Aligned_cols=124 Identities=18% Similarity=0.158 Sum_probs=92.3
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
+.+++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++| +++|+||++.
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~q~~~~~~~tv~ 86 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGTIK 86 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEECSSCCCCSBCHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEecCCcccCCCHH
Confidence 34578999999 999999999999999999999999999998 9999987 3899999764
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc-----------cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-----------~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+|+.++... .. . ...+.++.+++.. ..+..+.+ |||||||++|||||+ +|+|+||| |++|
T Consensus 87 enl~~~~~~-~~--~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~ 160 (229)
T 2pze_A 87 ENIIFGVSY-DE--Y---RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 160 (229)
T ss_dssp HHHHTTSCC-CH--H---HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred HHhhccCCc-Ch--H---HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccC
Confidence 566554221 11 0 1111222222221 12334567 999999999999999 99999999 6777
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 161 LD~~~~ 166 (229)
T 2pze_A 161 LDVLTE 166 (229)
T ss_dssp SCHHHH
T ss_pred CCHHHH
Confidence 775443
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=6e-28 Score=231.25 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=107.6
Q ss_pred CCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH----
Q 027509 65 FSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (222)
Q Consensus 65 ~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~---- 138 (222)
|.+..+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++++||||++.
T Consensus 364 y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 443 (598)
T 3qf4_B 364 YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST 443 (598)
T ss_dssp SSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS
T ss_pred CCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc
Confidence 44455688999999 999999999999999999999999999998 999999999987777888889999999875
Q ss_pred ---HHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcC-----------CC-ChHHHHHHHHHHHHc-CCCeEEEe-c
Q 027509 139 ---RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLL-----------CE-SGGDNLAANFSRELA-DYIIYIID-V 201 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~-----------~e-SgGqkQrv~iArAL~-~p~IlILD-~ 201 (222)
+|+.++... ... +.+.++++.+++....+.++ .+ |||||||++|||||+ +|+|+||| |
T Consensus 444 tv~eni~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEp 518 (598)
T 3qf4_B 444 TVKENLKYGNPG-ATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEA 518 (598)
T ss_dssp BHHHHHHSSSTT-CCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred cHHHHHhcCCCC-CCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 677665321 111 12233444444433333322 45 999999999999999 99999999 5
Q ss_pred CCCCCC
Q 027509 202 SGGDKI 207 (222)
Q Consensus 202 t~G~d~ 207 (222)
|+++|.
T Consensus 519 ts~LD~ 524 (598)
T 3qf4_B 519 TSNVDT 524 (598)
T ss_dssp CTTCCH
T ss_pred ccCCCH
Confidence 566663
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.95 E-value=6.8e-28 Score=229.90 Aligned_cols=135 Identities=19% Similarity=0.185 Sum_probs=105.6
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
..+++++++|+ ++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++++||||++.
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 432 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVK 432 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHH
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHH
Confidence 34678999999 999999999999999999999999999998 999999999987777888889999999875
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCcc-----------cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-----------~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+|+.++... ... +.+.++++..++.. .......+ |||||||++|||||+ +|+|+||| ||++
T Consensus 433 eni~~~~~~-~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~ 507 (578)
T 4a82_A 433 ENILLGRPT-ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507 (578)
T ss_dssp HHHGGGCSS-CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHhcCCCC-CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 677665322 211 12223333333322 22233345 999999999999999 99999999 6666
Q ss_pred CCC
Q 027509 205 DKI 207 (222)
Q Consensus 205 ~d~ 207 (222)
+|.
T Consensus 508 LD~ 510 (578)
T 4a82_A 508 LDL 510 (578)
T ss_dssp CCH
T ss_pred CCH
Confidence 664
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.95 E-value=7.3e-28 Score=230.26 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=107.5
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++++||||++. +
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 436 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 436 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHH
Confidence 3578999999 999999999999999999999999999998 999999999977667777889999999875 6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcc-------cccCcC----CC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLF-------KADLLL----CE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~-------~~d~~~----~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++....... ..+.+.++++.+++.. ..+..+ .+ |||||||++|||||+ +|+|+||| ||+++
T Consensus 437 ni~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~L 514 (595)
T 2yl4_A 437 NIAYGADDPSSV--TAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 514 (595)
T ss_dssp HHHTTSSSTTTS--CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSC
T ss_pred HHhhcCCCcccc--CHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCC
Confidence 777654221001 1123445555555432 233333 56 999999999999999 99999999 66666
Q ss_pred CCC
Q 027509 206 KIP 208 (222)
Q Consensus 206 d~p 208 (222)
|..
T Consensus 515 D~~ 517 (595)
T 2yl4_A 515 DAE 517 (595)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=2e-27 Score=227.27 Aligned_cols=139 Identities=19% Similarity=0.194 Sum_probs=107.0
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
..+++++++|+ ++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++++||||++.
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~ 434 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIK 434 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHH
Confidence 45688999999 999999999999999999999999999998 999999999987777888889999999975
Q ss_pred HHHHhcCCCCcchHHHHHH-----HHHHHHhc--CCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 139 RAVETGGCPHAAIREDISI-----NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~-----~~~~L~~l--~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
+|+.++... ....+..+. ..+.++.+ ++....+....+ |||||||++|||||+ +|+|+||| ||+++|.
T Consensus 435 eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~ 512 (587)
T 3qf4_A 435 ENLKWGRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512 (587)
T ss_dssp HHHTTTCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCH
T ss_pred HHHhccCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 677665322 221111111 11223332 333344555667 999999999999999 99999999 5556663
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.93 E-value=2.4e-26 Score=203.06 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=88.8
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
..++++++|+ ++|++++|+|||||||||||++|+|+++|+ |+|.++| +|+||||++. +
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCCCCSSBHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCccCcccHHH
Confidence 3578899999 999999999999999999999999999998 9999876 3899999764 4
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCccc-----------ccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~-----------~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+. +. .. . .. ...+.++.+++... .+..+.+ |||||||++|||||+ +|+|+||| |++|+
T Consensus 118 nl~-~~-~~-~-~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~L 190 (290)
T 2bbs_A 118 NII-GV-SY-D-EY---RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (290)
T ss_dssp HHH-TT-CC-C-HH---HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred Hhh-Cc-cc-c-hH---HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccC
Confidence 554 22 11 1 00 11122233332211 2233467 999999999999999 99999999 66677
Q ss_pred CCCcc
Q 027509 206 KIPRK 210 (222)
Q Consensus 206 d~p~K 210 (222)
|...+
T Consensus 191 D~~~~ 195 (290)
T 2bbs_A 191 DVLTE 195 (290)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 75433
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.92 E-value=1.1e-25 Score=231.92 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=109.4
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++||.+||+||+|||||||+++|+|++.|+ |+|.++|.|+...+...+|++|++|||++. +
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1171 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAE 1171 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHH
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHH
Confidence 3578999999 999999999999999999999999999998 999999999999889999999999999986 7
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCC-------cccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEecCC-CC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIIDVSG-GD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l-------~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD~t~-G~ 205 (222)
|+.+|..+.....+ .+.++++..++ ...+|..+.+ |||||||++|||||+ +|+|+||||++ .+
T Consensus 1172 NI~~gld~~~~sd~---ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaL 1248 (1321)
T 4f4c_A 1172 NIIYGLDPSSVTMA---QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248 (1321)
T ss_dssp HHSSSSCTTTSCHH---HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCST
T ss_pred HHhccCCCCCCCHH---HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccC
Confidence 88777544221112 23334443333 2345666654 999999999999999 99999999655 45
Q ss_pred C
Q 027509 206 K 206 (222)
Q Consensus 206 d 206 (222)
|
T Consensus 1249 D 1249 (1321)
T 4f4c_A 1249 D 1249 (1321)
T ss_dssp T
T ss_pred C
Confidence 4
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=4.8e-25 Score=226.77 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=105.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++||++||+||||||||||+++|+|+++|+ |+|.++|.++...+...++++++||||++. +
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 1125 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHH
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHH
Confidence 3578999999 999999999999999999999999999998 999999999988888888889999999985 6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCC-------cccccCcC----CC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSN-------LFKADLLL----CE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l-------~~~~d~~~----~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~ 205 (222)
|+.++........+. +.++++..++ ...++..+ .+ |||||||++|||||+ +|+|+||| ||.++
T Consensus 1126 Ni~~~~~~~~~~~~~---i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~l 1202 (1284)
T 3g5u_A 1126 NIAYGDNSRVVSYEE---IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202 (1284)
T ss_dssp HHTCCCSSCCCCHHH---HHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSC
T ss_pred HHhccCCCCCCCHHH---HHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 666654321111111 1122222222 12233333 34 999999999999999 99999999 66677
Q ss_pred CCC
Q 027509 206 KIP 208 (222)
Q Consensus 206 d~p 208 (222)
|..
T Consensus 1203 D~~ 1205 (1284)
T 3g5u_A 1203 DTE 1205 (1284)
T ss_dssp CHH
T ss_pred CHH
Confidence 743
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.91 E-value=8.7e-25 Score=225.32 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=108.3
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~------- 138 (222)
..+.++++||+ ++|++++|+||+|||||||+++|+|+++|+ |+|.++|.++...+...++++|+||+|++.
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~ 509 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIE 509 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchh
Confidence 35678999999 999999999999999999999999999999 999999999999888999999999999986
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcC-------CcccccCcCCC-----ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~-------l~~~~d~~~~e-----SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
+|+.+|.. .... + .+.++++..+ +....+..+.+ |||||||++|||||+ +|+||||| +|+.
T Consensus 510 eNI~~g~~-~~~~-~---~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSa 584 (1321)
T 4f4c_A 510 ENISLGKE-GITR-E---EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSA 584 (1321)
T ss_dssp HHHHTTCT-TCCH-H---HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHhhhcc-cchH-H---HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccccc
Confidence 88888743 2222 2 2222222222 12334555544 999999999999999 99999999 5555
Q ss_pred CCC
Q 027509 205 DKI 207 (222)
Q Consensus 205 ~d~ 207 (222)
+|.
T Consensus 585 LD~ 587 (1321)
T 4f4c_A 585 LDA 587 (1321)
T ss_dssp SCT
T ss_pred CCH
Confidence 664
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=3.9e-25 Score=227.40 Aligned_cols=137 Identities=16% Similarity=0.145 Sum_probs=105.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------H
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~ 139 (222)
.+++++++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++|+||||++. +
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 482 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAE 482 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHH
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHH
Confidence 4678999999 999999999999999999999999999998 999999999988888888889999999985 7
Q ss_pred HHHhcCCCCcchHHHHHH-----HHHHHHhcCC--cccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCC
Q 027509 140 AVETGGCPHAAIREDISI-----NLGPLEELSN--LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~-----~~~~L~~l~l--~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d 206 (222)
|+.++... ....+..+. ..+.++.+.. .........+ |||||||++|||||+ +|+|+||| ||+++|
T Consensus 483 Ni~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD 558 (1284)
T 3g5u_A 483 NIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558 (1284)
T ss_dssp HHHHHCSS-CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSC
T ss_pred HHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 77776432 221111111 1223333321 1122333445 999999999999999 99999999 555555
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=1.5e-24 Score=205.73 Aligned_cols=141 Identities=18% Similarity=0.094 Sum_probs=99.0
Q ss_pred CCCCCCCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcE---------EEeeccCCCCChHH--Hhhcc
Q 027509 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSL---------AAVTNDIFTKEDGE--FLMRN 130 (222)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I---------~i~g~di~~~~~~e--~~~~i 130 (222)
+|.++...+.+++ + ++||+++|+||||||||||||+|+|+++|+ |++ .++|.++....... ....+
T Consensus 30 ~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 108 (538)
T 1yqt_A 30 RYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRP 108 (538)
T ss_dssp ECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCC
T ss_pred EECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhh
Confidence 3443334667788 7 999999999999999999999999999998 985 23333321000001 12357
Q ss_pred EEecCchHHHHHhcCCCCcchHHHH------HHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-c
Q 027509 131 GALPEERIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (222)
Q Consensus 131 g~v~Q~~~~~i~~g~~~~~~~~~~~------~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~ 201 (222)
++++|......... . ..+.+.. .++.++|+.+++....++.+.+ ||||||||+|||||+ +|+||||| |
T Consensus 109 ~~~~q~~~~~~~~~--~-~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEP 185 (538)
T 1yqt_A 109 VVKPQYVDLIPKAV--K-GKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEP 185 (538)
T ss_dssp EEECSCGGGSGGGC--C-SBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred hhhhhhhhhcchhh--h-ccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 88888743211110 0 0122211 2466789999998888999999 999999999999999 99999999 6
Q ss_pred CCCCCCC
Q 027509 202 SGGDKIP 208 (222)
Q Consensus 202 t~G~d~p 208 (222)
|+++|..
T Consensus 186 Ts~LD~~ 192 (538)
T 1yqt_A 186 SSYLDIR 192 (538)
T ss_dssp TTTCCHH
T ss_pred cccCCHH
Confidence 6677754
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=2.5e-24 Score=204.41 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=96.2
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HHH
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~i 141 (222)
+...+|+ .+||++||+||||||||||+++|+|+++|+ |+|.+++ +.++|+||+.. +++
T Consensus 284 l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEEECSSCCCCCSSBHHHHH
T ss_pred EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEeechhcccccCCCHHHHH
Confidence 3445777 899999999999999999999999999998 9998643 24678887643 333
Q ss_pred HhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
......... .....+.++++.+++....++.+.+ ||||||||+|||||+ +|+||||| ||+|+|+..+
T Consensus 352 ~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 421 (538)
T 3ozx_A 352 ENASKDALS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421 (538)
T ss_dssp HHHCSSTTC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred HHhhhhccc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 332111110 0112456678888988888999999 999999999999999 99999999 7788886543
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.90 E-value=1.2e-24 Score=209.34 Aligned_cols=123 Identities=18% Similarity=0.129 Sum_probs=95.5
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH--------HH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------~~ 140 (222)
.+...+|+ .+||+++|+|||||||||||++|+|+++|+ |+|.+ ..+++|+||++. ++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHHH
Confidence 34566777 899999999999999999999999999998 99875 136899999863 11
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCc
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~ 209 (222)
+..... ........+.++|+.+++....++.+.+ ||||||||+|||||+ +|+||||| ||.|+|...
T Consensus 438 ~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 438 LSKIDS---SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHH---HHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HHhhhc---cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 111000 0001123456788999998888999999 999999999999999 99999999 777888653
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=5.5e-24 Score=201.91 Aligned_cols=123 Identities=19% Similarity=0.145 Sum_probs=95.0
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHH--------HH
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------AV 141 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~--------~i 141 (222)
+...+|+ .+||+++|+|||||||||||++|+|+++|+ |+|.+ ...|+|+||++.. ++
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCCCCcHHHHH
Confidence 4556677 899999999999999999999999999998 99874 1358999998631 11
Q ss_pred HhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
...... .......+.++++.+++....++.+.+ ||||||||+|||||+ +|+||||| ||.|+|+..+
T Consensus 369 ~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~ 437 (538)
T 1yqt_A 369 SKIDAS---KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437 (538)
T ss_dssp HHHHHH---HHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred Hhhhcc---CCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 100000 000123456678888888788899999 999999999999999 99999999 7778886543
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=4.2e-24 Score=205.47 Aligned_cols=135 Identities=22% Similarity=0.134 Sum_probs=97.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcE---------EEeeccCCCCChH--HHhhccEEecCc
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSL---------AAVTNDIFTKEDG--EFLMRNGALPEE 136 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I---------~i~g~di~~~~~~--e~~~~ig~v~Q~ 136 (222)
..+.+++ + ++||+++|+|||||||||||++|+|+++|+ |++ .++|.++...... .....+++++|.
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 3667788 7 899999999999999999999999999998 985 2334332110001 112357888886
Q ss_pred hHHHHHhcCCCCcchHHHH------HHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCC
Q 027509 137 RIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (222)
Q Consensus 137 ~~~~i~~g~~~~~~~~~~~------~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~ 207 (222)
....... .. ..+.+.. .++.++|+.+++....++.+.+ ||||||||+|||||+ +|+||||| ||+++|.
T Consensus 185 ~~~~~~~--~~-~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~ 261 (607)
T 3bk7_A 185 VDLLPKA--VK-GKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 261 (607)
T ss_dssp GGGGGGT--CC-SBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCH
T ss_pred hhhchhh--cc-ccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 4321111 00 0222211 2456789999998889999999 999999999999999 99999999 6677775
Q ss_pred C
Q 027509 208 P 208 (222)
Q Consensus 208 p 208 (222)
.
T Consensus 262 ~ 262 (607)
T 3bk7_A 262 R 262 (607)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.5e-23 Score=196.83 Aligned_cols=139 Identities=12% Similarity=-0.024 Sum_probs=89.3
Q ss_pred CCcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEE-----------EeeccCCCCChHHHhhcc--EEecC
Q 027509 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFLMRN--GALPE 135 (222)
Q Consensus 70 ~~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~-----------i~g~di~~~~~~e~~~~i--g~v~Q 135 (222)
..+..++.-.+|+++||+|||||||||||++|+|+++|+ |+|. +.|.++...........+ .+.+|
T Consensus 92 ~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (608)
T 3j16_B 92 FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ 171 (608)
T ss_dssp CEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECC
T ss_pred eeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchh
Confidence 344455544889999999999999999999999999998 9873 111111000000001111 12223
Q ss_pred chHHHHHhcCCCCcchHH--------HHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCC
Q 027509 136 ERIRAVETGGCPHAAIRE--------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (222)
Q Consensus 136 ~~~~~i~~g~~~~~~~~~--------~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G 204 (222)
...........+...+.+ ....+.++++.+++....++.+.+ ||||||||+|||||+ +|+||||| ||++
T Consensus 172 ~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~ 251 (608)
T 3j16_B 172 YVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY 251 (608)
T ss_dssp CTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTT
T ss_pred hhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccC
Confidence 211100000000001110 124567789999999899999999 999999999999999 99999999 6667
Q ss_pred CCCC
Q 027509 205 DKIP 208 (222)
Q Consensus 205 ~d~p 208 (222)
+|..
T Consensus 252 LD~~ 255 (608)
T 3j16_B 252 LDVK 255 (608)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 7743
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.88 E-value=4.8e-23 Score=195.62 Aligned_cols=134 Identities=15% Similarity=0.011 Sum_probs=90.9
Q ss_pred cccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcE-----------EEeeccCCCCChHHHhh--ccEEecCch
Q 027509 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSL-----------AAVTNDIFTKEDGEFLM--RNGALPEER 137 (222)
Q Consensus 72 ~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I-----------~i~g~di~~~~~~e~~~--~ig~v~Q~~ 137 (222)
+-++..-++||++||+||||||||||||+|+|+++|+ |+| .+.+.++.......... .+...+|..
T Consensus 16 l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 95 (538)
T 3ozx_A 16 LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYV 95 (538)
T ss_dssp EECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCT
T ss_pred ecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchh
Confidence 4456666899999999999999999999999999998 987 34444432100000111 223333332
Q ss_pred HHHHHhcCCCCcchHHH------HHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 138 IRAVETGGCPHAAIRED------ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 138 ~~~i~~g~~~~~~~~~~------~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
.....+ ....+.+. ...+.++++.+++....++.+.+ ||||||||+|||||+ +|+||||| ||+++|..
T Consensus 96 ~~~~~~---~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~ 172 (538)
T 3ozx_A 96 EYASKF---LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR 172 (538)
T ss_dssp TGGGTT---CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred hhhhhh---ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 110000 00111111 12456788999998889999999 999999999999999 99999999 56677753
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.3e-22 Score=195.21 Aligned_cols=124 Identities=19% Similarity=0.076 Sum_probs=93.7
Q ss_pred CcccCCCC-CCC-----cEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-----
Q 027509 71 PILSRNFN-ERA-----FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (222)
Q Consensus 71 ~~~~~~~~-~~G-----eivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~----- 138 (222)
.+.+++|+ .+| |+++|+|||||||||||++|+|+++|+ |+. +. ...++|+||+..
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCCCS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccCCc
Confidence 45667777 666 889999999999999999999999998 862 21 235889988743
Q ss_pred ---HHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCCcc
Q 027509 139 ---RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 139 ---~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p~K 210 (222)
+++......... ....+.++++.+++....++.+.+ ||||||||+|||||+ +|+||||| ||+|+|...+
T Consensus 429 tv~e~~~~~~~~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 503 (608)
T 3j16_B 429 TVRQLFFKKIRGQFL---NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQR 503 (608)
T ss_dssp BHHHHHHHHCSSTTT---SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHH
T ss_pred cHHHHHHHHhhcccc---cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHH
Confidence 222211111110 123455688889998889999999 999999999999999 99999999 7778885433
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=6.7e-22 Score=198.29 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=44.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEee
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g 115 (222)
.+++++++|+ .+|++++|+||||||||||||+|+|+++|+ |+|.+++
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 4578899999 999999999999999999999999999998 9999875
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.84 E-value=8.8e-22 Score=190.43 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=81.7
Q ss_pred CCCCcccCCCC-CCCcEEEEEcCCCChHHHHH---------------------HHHHcCcCCC-CcEE-------Eeecc
Q 027509 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALM---------------------LALCKFLRDK-YSLA-------AVTND 117 (222)
Q Consensus 68 ~~~~~~~~~~~-~~GeivgIiGpNGSGKSTLL---------------------k~L~Gll~p~-G~I~-------i~g~d 117 (222)
+..++++++|+ ++|++++|+||||||||||+ +++.++..|+ |.|. +++.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34578999999 99999999999999999998 8888888886 5544 33333
Q ss_pred CCCCChHHHhhccEEecCchH---------------------------HHHHhcCCCCcc-h-H-------HHHHHHHHH
Q 027509 118 IFTKEDGEFLMRNGALPEERI---------------------------RAVETGGCPHAA-I-R-------EDISINLGP 161 (222)
Q Consensus 118 i~~~~~~e~~~~ig~v~Q~~~---------------------------~~i~~g~~~~~~-~-~-------~~~~~~~~~ 161 (222)
+.. ..++.+++|+|.+. +++.+....... . . +......+.
T Consensus 110 ~~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 110 TSR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF 185 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred hhc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence 211 12334555555322 111111000000 0 0 000112235
Q ss_pred HHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-CCC--eEEEe-cCCCCCCCc
Q 027509 162 LEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYI--IYIID-VSGGDKIPR 209 (222)
Q Consensus 162 L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~p~--IlILD-~t~G~d~p~ 209 (222)
++.+++... .++.+.+ ||||||||+|||||+ +|+ ||||| ||+|+|...
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~ 239 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD 239 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGG
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHH
Confidence 778887654 6888888 999999999999999 888 99999 677777543
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.82 E-value=1.4e-23 Score=176.89 Aligned_cols=110 Identities=18% Similarity=0.106 Sum_probs=69.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHH-HhcCCCCcchH--HH
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ETGGCPHAAIR--ED 154 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i-~~g~~~~~~~~--~~ 154 (222)
++|++++|+|||||||||||++|+|+ +|+ |+|... ++. .+..+.++.++|+||++.+++ .+......... ..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~--~~~-~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~ 95 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI--ILT-RPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVE 95 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE--EEE-ECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE--Eec-CCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999999999999 887 998532 221 111234567999999875555 22100000000 00
Q ss_pred HHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEecCCCC
Q 027509 155 ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSGGD 205 (222)
Q Consensus 155 ~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD~t~G~ 205 (222)
...+.++++. + .|||||++|||||+ +|+|||||||+.-
T Consensus 96 ~~~~~~~l~~-g------------lGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 96 PEVIPKLMEA-G------------IVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp TTHHHHHHHT-T------------SEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHHh-C------------CchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 1122333333 2 29999999999999 9999999976653
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.80 E-value=3.3e-20 Score=186.10 Aligned_cols=121 Identities=18% Similarity=0.122 Sum_probs=90.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH---------
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~--------- 138 (222)
..++++++|+ .+|++++|+||||||||||||+|+| |.| .|.+.. . ..+++|++|+..
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~----~--~~~~~~v~q~~~~~~~~ltv~ 514 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQ----E--ECRTVYVEHDIDGTHSDTSVL 514 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCT----T--TSCEEETTCCCCCCCTTSBHH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCccc----c--ceeEEEEcccccccccCCcHH
Confidence 3578899999 9999999999999999999999995 332 222221 0 124678887631
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCc-ccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~-~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
+++.+ .. ... ..++.++|+.+++. ...++.+.+ |||||||++|||||+ +|+||||| |++++|..
T Consensus 515 e~l~~-~~--~~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~ 582 (986)
T 2iw3_A 515 DFVFE-SG--VGT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTV 582 (986)
T ss_dssp HHHHT-TC--SSC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHH
T ss_pred HHHHH-hh--cCH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 33332 11 111 34567789999984 567888888 999999999999999 99999999 66777754
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.80 E-value=3.5e-20 Score=179.24 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CC---CeEEEe-cCCCCCCC
Q 027509 157 INLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY---IIYIID-VSGGDKIP 208 (222)
Q Consensus 157 ~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p---~IlILD-~t~G~d~p 208 (222)
...+.++.+++.. ..++.+.+ ||||||||+|||||+ +| +||||| ||+|+|..
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~ 580 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD 580 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHH
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHH
Confidence 4556777888754 46788888 999999999999998 76 599999 66777743
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.3e-22 Score=186.71 Aligned_cols=122 Identities=16% Similarity=-0.038 Sum_probs=89.1
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C-c-EEEeeccCCCCChHHHhhccEEecCchH-----------
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-S-LAAVTNDIFTKEDGEFLMRNGALPEERI----------- 138 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G-~-I~i~g~di~~~~~~e~~~~ig~v~Q~~~----------- 138 (222)
+++|+ ++|++++|+||||||||||+|+|+|+++|+ | + |.+++ + .++.++|+||+..
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccchhhcccccccchh
Confidence 46777 899999999999999999999999999998 9 8 99987 2 1467899999762
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHH--Hc-CCCe----EEEec-CCC-CCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRE--LA-DYII----YIIDV-SGG-DKIP 208 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArA--L~-~p~I----lILD~-t~G-~d~p 208 (222)
+++ ++....... .....+.++++.+++....+ +.+ |+|||||++|||| |+ +|+| +|||| |+. +|..
T Consensus 201 eni-~~~~~~~~~-~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~ 276 (460)
T 2npi_A 201 LPT-WGQSLTSGA-TLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN 276 (460)
T ss_dssp CTT-CSCBCBSSC-CSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS
T ss_pred hhh-cccccccCc-chHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh
Confidence 122 221110000 00112334566777766554 556 9999999999999 99 9999 99998 555 5654
No 62
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=4.1e-20 Score=163.82 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=89.0
Q ss_pred ccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh----HHH--hhccEEecCchHHHHHhc
Q 027509 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERIRAVETG 144 (222)
Q Consensus 73 ~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~----~e~--~~~ig~v~Q~~~~~i~~g 144 (222)
..++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.+++.++..... ... +.+++|++|++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-----~ 165 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-----K 165 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-------C
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-----c
Confidence 357787 889999999999999999999999999998 999999998754211 112 347999999753 0
Q ss_pred CCCCcchHHHHHHHH------HHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCC--eEEEecCCCCCC
Q 027509 145 GCPHAAIREDISINL------GPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI--IYIIDVSGGDKI 207 (222)
Q Consensus 145 ~~~~~~~~~~~~~~~------~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~--IlILD~t~G~d~ 207 (222)
..+...+.+...... .+++.+++....+.++.+ | +||++|||||+ +|+ ++|||+++|+|.
T Consensus 166 ~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDptsglD~ 235 (302)
T 3b9q_A 166 AKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNM 235 (302)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEEGGGGGGG
T ss_pred cCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEeCCCCcCH
Confidence 111111122211110 123444544444555666 7 89999999999 999 999999999874
No 63
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.75 E-value=2.2e-19 Score=162.88 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=89.1
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh----HH--HhhccEEecCchHHHHHhcC
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GE--FLMRNGALPEERIRAVETGG 145 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~----~e--~~~~ig~v~Q~~~~~i~~g~ 145 (222)
.++|+ ++|++++|+||||||||||+++|+|+++|+ |+|.+++.|+..... .. .+.+++|++|++.. .
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-----~ 223 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-----A 223 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-----C
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-----c
Confidence 46787 889999999999999999999999999998 999999998754211 11 13479999997420 1
Q ss_pred CCCcchHHHHHHHH------HHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCC--eEEEecCCCCCC
Q 027509 146 CPHAAIREDISINL------GPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI--IYIIDVSGGDKI 207 (222)
Q Consensus 146 ~~~~~~~~~~~~~~------~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~--IlILD~t~G~d~ 207 (222)
.+...+.+...... .+++.+++....+.++.+ | +||++|||||+ +|+ ++|||+++|+|.
T Consensus 224 ~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDpttglD~ 292 (359)
T 2og2_A 224 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNM 292 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEGGGGGGG
T ss_pred ChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCCCCCH
Confidence 11111111111110 123444554444555666 7 89999999999 999 999999999884
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.73 E-value=9.2e-19 Score=141.80 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=68.1
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHH
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRE 153 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~ 153 (222)
++|+ ++|++++|+||||||||||++++.+ |...+.. ..+ .++++|++......+ ...+
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-----~~~~~~~--------d~~---~g~~~~~~~~~~~~~-----~~~~ 60 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFK-----PTEVISS--------DFC---RGLMSDDENDQTVTG-----AAFD 60 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSC-----GGGEEEH--------HHH---HHHHCSSTTCGGGHH-----HHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHcc-----CCeEEcc--------HHH---HHHhcCcccchhhHH-----HHHH
Confidence 5778 8999999999999999999999653 2111111 111 256666643110000 0111
Q ss_pred HHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEecCC-CCC
Q 027509 154 DISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSG-GDK 206 (222)
Q Consensus 154 ~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD~t~-G~d 206 (222)
............+.....+.....|+|||||++|||||+ +|++++||||+ ++|
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld 115 (171)
T 4gp7_A 61 VLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQ 115 (171)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHH
Confidence 111122222333444444544444999999999999999 99999999665 444
No 65
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.72 E-value=1.5e-19 Score=160.91 Aligned_cols=110 Identities=11% Similarity=-0.042 Sum_probs=77.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH-------HHHHhcCCCCcc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHAA 150 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~i~~g~~~~~~ 150 (222)
++|+++||+||||||||||+++|+|+++|. |. .++++|+|+.. +++.+.......
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFP 150 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCC
Confidence 789999999999999999999999999986 52 24566666543 222111000000
Q ss_pred hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCC
Q 027509 151 IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDK 206 (222)
Q Consensus 151 ~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d 206 (222)
...+...+.+.|+.++ ....+..+.+ |+||+||+++|++++ +|+|||||++....
T Consensus 151 ~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~ 207 (312)
T 3aez_A 151 ESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQ 207 (312)
T ss_dssp GGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTC
T ss_pred hHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccC
Confidence 0112344556677666 3334456667 999999999999999 99999999876664
No 66
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.72 E-value=9.4e-19 Score=143.71 Aligned_cols=100 Identities=19% Similarity=0.021 Sum_probs=66.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHHHHHHHH
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~~~~~L 162 (222)
.++|+||||||||||+++|+|++. |.++|.+.......+.+++++|++|+.. + .... +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~-----~-~~~~------------~ 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTE-----G-KKKI------------F 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETT-----C-CEEE------------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCc-----H-HHHH------------H
Confidence 689999999999999999999985 4455543311111134567999999751 1 0000 0
Q ss_pred HhcCC--cccccCcCCC-ChHHHHHHHHHHH-----Hc-CCCeEEEec--CCC
Q 027509 163 EELSN--LFKADLLLCE-SGGDNLAANFSRE-----LA-DYIIYIIDV--SGG 204 (222)
Q Consensus 163 ~~l~l--~~~~d~~~~e-SgGqkQrv~iArA-----L~-~p~IlILD~--t~G 204 (222)
..+.. ....++++.+ |+|||||++||+| |+ +|+|+|||| |+.
T Consensus 60 ~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~ 112 (178)
T 1ye8_A 60 SSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME 112 (178)
T ss_dssp EETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG
T ss_pred HhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcc
Confidence 01111 1245667777 9999999999996 88 999999999 544
No 67
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.72 E-value=2.9e-18 Score=155.45 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=51.6
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC--------------------------------------CC-Cc
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR--------------------------------------DK-YS 110 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~--------------------------------------p~-G~ 110 (222)
.+.+++|+ .+| +++|+|||||||||||++|++++. +. ++
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 56778888 889 999999999999999999977764 33 77
Q ss_pred EEEeeccCCCCChHHHhhc-cEEecCch
Q 027509 111 LAAVTNDIFTKEDGEFLMR-NGALPEER 137 (222)
Q Consensus 111 I~i~g~di~~~~~~e~~~~-ig~v~Q~~ 137 (222)
|.++|.++......++... +.++||+.
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~ 156 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHS 156 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTC
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcc
Confidence 9999988753333444444 78999974
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.71 E-value=3.4e-18 Score=170.92 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=93.2
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHH-cCc----C---CC-Cc-------------EEEeeccCCCC---ChH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALC-KFL----R---DK-YS-------------LAAVTNDIFTK---EDG 124 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~-Gll----~---p~-G~-------------I~i~g~di~~~---~~~ 124 (222)
.+.+++|+ +.|++++|+|+||||||||+++|+ |.+ . +. |. |.+++.++... ++.
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 57789999 999999999999999999999864 322 1 12 32 56666665311 111
Q ss_pred -------HH---------hhccEEecCchHHHHHhcCCC-----------------------------------------
Q 027509 125 -------EF---------LMRNGALPEERIRAVETGGCP----------------------------------------- 147 (222)
Q Consensus 125 -------e~---------~~~ig~v~Q~~~~~i~~g~~~----------------------------------------- 147 (222)
.+ .+.+||++|.+..|..-|.|+
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 01 134677777543322111111
Q ss_pred -------CcchHH---------HHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CC---CeEEEe-cCCC
Q 027509 148 -------HAAIRE---------DISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY---IIYIID-VSGG 204 (222)
Q Consensus 148 -------~~~~~~---------~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p---~IlILD-~t~G 204 (222)
.+.+.+ ......++|+.+++.. .+++.+.+ ||||||||+||++|+ +| +||||| ||+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsG 878 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG 878 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTT
T ss_pred CCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 001111 1223467889999876 67888888 999999999999999 75 899999 7888
Q ss_pred CCCCcc
Q 027509 205 DKIPRK 210 (222)
Q Consensus 205 ~d~p~K 210 (222)
+|...+
T Consensus 879 LD~~~~ 884 (972)
T 2r6f_A 879 LHVDDI 884 (972)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 886543
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.70 E-value=2.1e-18 Score=170.99 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-C---CCeEEEe-cCCCCCCCcc
Q 027509 156 SINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 156 ~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~---p~IlILD-~t~G~d~p~K 210 (222)
..+.++|+.+++.. .+++.+.+ ||||||||.|||+|+ + |+||||| ||+|+|...+
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~ 769 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADV 769 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHH
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHH
Confidence 35677899999876 46788888 999999999999999 7 6999999 7888886543
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.70 E-value=1.1e-19 Score=152.96 Aligned_cols=123 Identities=11% Similarity=-0.055 Sum_probs=77.7
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCCh-HHHhhccEEecCchHHHHHhc-----
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETG----- 144 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~-~e~~~~ig~v~Q~~~~~i~~g----- 144 (222)
+.+++|+ ++|++++|+||||||||||+++|+|++ | |+|.+ +.++.+... ...+..++|+||++..+..+.
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDF 89 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccch
Confidence 4578999 999999999999999999999999998 6 99998 776644322 123457999999876332210
Q ss_pred ----CC-CCc-chHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHH-----HHHHc-CCCeEEEecCC
Q 027509 145 ----GC-PHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANF-----SRELA-DYIIYIIDVSG 203 (222)
Q Consensus 145 ----~~-~~~-~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~i-----ArAL~-~p~IlILD~t~ 203 (222)
.. ... ... ...+.++++...+. .++ .+ ||||+||++| +|+|+ +|++++||++.
T Consensus 90 l~~~~~~~~~~g~~--~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~ 155 (218)
T 1z6g_A 90 LEYDNYANNFYGTL--KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRL 155 (218)
T ss_dssp EEEEEETTEEEEEE--HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHH
T ss_pred hhhhhcccccCCCc--HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHH
Confidence 00 000 011 12344455543221 122 34 9999999999 88888 89999999543
No 71
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.70 E-value=8.7e-20 Score=159.17 Aligned_cols=114 Identities=17% Similarity=0.036 Sum_probs=64.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHH--------HHHhcCCCCcchH
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------AVETGGCPHAAIR 152 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~--------~i~~g~~~~~~~~ 152 (222)
..++|+|||||||||||++|+|++.|+ |+|.++|.++... ..++.++|++|+... ++.++......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-- 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-- 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCT--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccH--
Confidence 468999999999999999999999998 9999999877321 234679999998642 11222111100
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHcCCCeEEEecC-CCCC
Q 027509 153 EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVS-GGDK 206 (222)
Q Consensus 153 ~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~~p~IlILD~t-~G~d 206 (222)
+....+.+.+. ....+.++.+ |+||+||+++|||++. +|+|||| .|++
T Consensus 78 ~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~--lllldep~~gL~ 127 (270)
T 3sop_A 78 NCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC--LYFISPTGHSLR 127 (270)
T ss_dssp TCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE--EEEECCCSSSCC
T ss_pred HHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee--eEEEecCCCcCC
Confidence 00011112221 2223444455 9999999999998775 9999977 5665
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.68 E-value=1.7e-17 Score=166.38 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=44.7
Q ss_pred HHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CC---CeEEEe-cCCCCCCCcc
Q 027509 158 NLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY---IIYIID-VSGGDKIPRK 210 (222)
Q Consensus 158 ~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p---~IlILD-~t~G~d~p~K 210 (222)
..++|+.+++.. ..++.+.+ ||||||||+||++|+ +| +||||| ||+|+|...+
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~ 902 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDI 902 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHH
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHH
Confidence 456888998876 67888888 999999999999999 75 899999 8888886543
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.64 E-value=2.4e-17 Score=147.44 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=72.2
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~ 148 (222)
++..++|. ++|++++|+|||||||||||++|+|+++|+ |.|.+++.+..... ..+..++++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--~~~~~i~~~~g------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--HHKNYTQLFFG------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--SCSSEEEEECB-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--cchhEEEEEeC-------------
Confidence 45677888 899999999999999999999999999998 99999986432111 11233444420
Q ss_pred cchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 149 AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 149 ~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
+||+||++|||||. +|+++||||+++
T Consensus 225 ------------------------------gg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 225 ------------------------------GNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp ------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred ------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 79999999999999 999999999987
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.64 E-value=1.5e-17 Score=147.97 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=76.1
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhh-ccEEecCchHHHHHhcCCC
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEERIRAVETGGCP 147 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~-~ig~v~Q~~~~~i~~g~~~ 147 (222)
+++++++|+ ++|++++|+||||||||||+++|+|++ .|+|..........-...++. ++.+.++
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~~~~~------------ 179 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAALVDD------------ 179 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCEEEEE------------
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhccCcc------------
Confidence 467788999 999999999999999999999999999 898865432111000111222 3444321
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCCccCC
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIPRKGG 212 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p~K~~ 212 (222)
.. + .+.+.++.+ +...++ ... ||||||| ||||+ +|+||| |+++|...+.-
T Consensus 180 -~~--~---~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl---Ts~LD~~~~~~ 231 (305)
T 2v9p_A 180 -AT--H---ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV---TSNIDVQAEDR 231 (305)
T ss_dssp -EC--H---HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE---EESSCSTTCGG
T ss_pred -cc--H---HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---ECCCCHHHHHH
Confidence 01 0 222344442 233344 456 9999999 99999 999999 89998765543
No 75
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.63 E-value=3.1e-16 Score=139.04 Aligned_cols=121 Identities=10% Similarity=0.066 Sum_probs=79.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh-HH-----HhhccEEecCchHHHHHhcCCCCcchH
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GE-----FLMRNGALPEERIRAVETGGCPHAAIR 152 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~-~e-----~~~~ig~v~Q~~~~~i~~g~~~~~~~~ 152 (222)
+|++++|+||||||||||+++|+|+++|+ |+|.+.+.|+..... .+ .+.+++|++|++. ..+...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~------~~p~~~v~ 174 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG------TDSAALAY 174 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT------CCHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC------CCHHHHHH
Confidence 79999999999999999999999999998 999999999865321 11 1346899999752 11211112
Q ss_pred HHHHHHHH-HHHh--cCCcccccCcCCC-ChHHHHHHHHHHHHc-CCC--eEEEecCCCCC
Q 027509 153 EDISINLG-PLEE--LSNLFKADLLLCE-SGGDNLAANFSRELA-DYI--IYIIDVSGGDK 206 (222)
Q Consensus 153 ~~~~~~~~-~L~~--l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~--IlILD~t~G~d 206 (222)
+....... ..+. +......+..... +...+||++|||||+ +|+ +++||++++.+
T Consensus 175 ~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~ 235 (304)
T 1rj9_A 175 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN 235 (304)
T ss_dssp HHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH
T ss_pred HHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH
Confidence 22211110 0000 1111111111111 556689999999999 998 78899988865
No 76
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.62 E-value=1.5e-15 Score=151.80 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-CC---CeEEEe-cCCCCCCCc
Q 027509 156 SINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY---IIYIID-VSGGDKIPR 209 (222)
Q Consensus 156 ~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~p---~IlILD-~t~G~d~p~ 209 (222)
....+.|+.+++.. .+++.+.+ ||||||||+|||||+ +| +||||| ||+|+|...
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~ 843 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFED 843 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHH
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHH
Confidence 35567888888865 45778888 999999999999998 65 699999 778887543
No 77
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.62 E-value=1.6e-18 Score=159.84 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=86.1
Q ss_pred CCcccCCCC-CCCc--------------------EEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHh
Q 027509 70 PPILSRNFN-ERAF--------------------TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL 127 (222)
Q Consensus 70 ~~~~~~~~~-~~Ge--------------------ivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~ 127 (222)
.++++++|+ ++|+ +++|+||||||||||||+|+|+++|+ |+|.+++.++.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------- 108 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------- 108 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------------
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc--------
Confidence 356788998 8999 99999999999999999999999998 99998886542
Q ss_pred hccEEecCchHH-HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCCChH--HHHHHHHHHHHc-----------C
Q 027509 128 MRNGALPEERIR-AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG--DNLAANFSRELA-----------D 193 (222)
Q Consensus 128 ~~ig~v~Q~~~~-~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgG--qkQrv~iArAL~-----------~ 193 (222)
+.++++|.+.. ++.+.-.+... .....+.++++.+++... +..+.-|+| |+||+.||++|+ +
T Consensus 109 -~~~~v~q~~~~~~ltv~D~~g~~--~~~~~~~~~L~~~~L~~~-~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 109 -MERHPYKHPNIPNVVFWDLPGIG--STNFPPDTYLEKMKFYEY-DFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp -CCCEEEECSSCTTEEEEECCCGG--GSSCCHHHHHHHTTGGGC-SEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred -eeEEeccccccCCeeehHhhccc--chHHHHHHHHHHcCCCcc-CCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEec
Confidence 12678876421 11110001100 001234557777776543 222213888 999999999996 4
Q ss_pred CCeEEEe-cCCCCCCCcc
Q 027509 194 YIIYIID-VSGGDKIPRK 210 (222)
Q Consensus 194 p~IlILD-~t~G~d~p~K 210 (222)
|++++|| |+.|+|...+
T Consensus 185 pdlllLDEPtsgLD~~~~ 202 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFDK 202 (413)
T ss_dssp HHHHHHHHHTTCCTTCCH
T ss_pred CcccccCcccccCCHHHH
Confidence 6788899 6778886543
No 78
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.61 E-value=1.2e-17 Score=142.10 Aligned_cols=116 Identities=11% Similarity=0.085 Sum_probs=70.7
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH-------HHHH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVE 142 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~-------~~i~ 142 (222)
++++++|+ ++|+++||+||||||||||+++|++++ |.+.++ ..++.++|++|+.. +++.
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~~~~ 80 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE----------QRQRKVVILSQDRFYKVLTAEQKAK 80 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC----------GGGCSEEEEEGGGGBCCCCHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc----------ccCCceEEEeCCcCccccCHhHhhh
Confidence 78899999 999999999999999999999999977 443322 23456888888743 1222
Q ss_pred h--cCCCCcc-hHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecC
Q 027509 143 T--GGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVS 202 (222)
Q Consensus 143 ~--g~~~~~~-~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t 202 (222)
+ +...... ...+...+.+.|+.+ ....+..+.+ |+||+||+.+ ++++ +|+++|||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 81 ALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred hhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCc
Confidence 1 1111000 001122334445543 2344566677 9999999988 5777 9999999964
No 79
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.60 E-value=1.1e-15 Score=135.37 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=29.7
Q ss_pred ccCcCCC-ChHHHHHHHHHHHHc-----CCCeEEEe-cCCCCCC
Q 027509 171 ADLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKI 207 (222)
Q Consensus 171 ~d~~~~e-SgGqkQrv~iArAL~-----~p~IlILD-~t~G~d~ 207 (222)
.+..+.+ |+|||||++||+||+ +|+||||| |+.++|.
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~ 256 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD 256 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCH
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCH
Confidence 4556667 999999999999984 68999999 5556654
No 80
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.51 E-value=2.2e-16 Score=130.91 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=40.4
Q ss_pred CC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCCh-HHHhhccEEecCchHH
Q 027509 77 FN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIR 139 (222)
Q Consensus 77 ~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~-~e~~~~ig~v~Q~~~~ 139 (222)
.+ ++|++++|+||||||||||+++|+|+++. |.+.+ ++..... ...++.++|+||++..
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~ 75 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSV-SATTRAPRPGEVDGVDYHFIDPTR 75 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECC-CEESSCCCTTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcc-cccccCCcccccCCCeeEecCHHH
Confidence 45 78999999999999999999999999863 33332 2211111 1224679999998764
No 81
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.49 E-value=4.4e-17 Score=133.38 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=67.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCC----CcEEEeeccCCCCC---hHHHh-hccE----EecCchHHHHHhcCCCCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKE---DGEFL-MRNG----ALPEERIRAVETGGCPHA 149 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~----G~I~i~g~di~~~~---~~e~~-~~ig----~v~Q~~~~~i~~g~~~~~ 149 (222)
++++|+|+||||||||+++|+++++|+ |.|.+++.++...+ ...++ +.++ +++|++..+ +. . .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~--~-~ 77 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IR--R-V 77 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EE--E-C
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Ee--c-C
Confidence 689999999999999999999999874 88999998865433 22344 3577 778875422 10 0 0
Q ss_pred chHHHHHHHHHHHHh-cCCcccccCcCCC--ChHHHHHHHHHHHHc-CCCeE
Q 027509 150 AIREDISINLGPLEE-LSNLFKADLLLCE--SGGDNLAANFSRELA-DYIIY 197 (222)
Q Consensus 150 ~~~~~~~~~~~~L~~-l~l~~~~d~~~~e--SgGqkQrv~iArAL~-~p~Il 197 (222)
. .+....+.+.++. +. .+|..+.| |+||+||++||||++ +|+++
T Consensus 78 ~-~~~~a~l~~~i~~~l~---g~dt~i~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 78 S-EEEGNDLDWIYERYLS---DYDLVITEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp C-HHHHTCHHHHHHHHTT---TCSEEEEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred C-hhhhhCHHHHHHhhCC---CCCEEEECCcCCCCCcEEEEEecccCCCccC
Confidence 0 1111122334444 32 35666666 999999999999999 88774
No 82
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.49 E-value=1.6e-14 Score=130.62 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=31.7
Q ss_pred cCcCCC-ChHHHHHHHHHHHHc-------CCCeEEEe-cCCCCCCCc
Q 027509 172 DLLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 172 d~~~~e-SgGqkQrv~iArAL~-------~p~IlILD-~t~G~d~p~ 209 (222)
++.+.+ |||||||++|||||+ +|+||||| |++|+|...
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~ 320 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTEN 320 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHH
Confidence 456777 999999999999998 89999999 666777543
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.48 E-value=4.3e-14 Score=133.02 Aligned_cols=108 Identities=15% Similarity=-0.010 Sum_probs=75.3
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCc--EEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcch
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYS--LAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~--I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~ 151 (222)
+... .+|++++|+||||||||||+++|+++..++|. +++...+. ...+..++ ..++ ...
T Consensus 274 L~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~----~~~l~~~~----------~~~g----~~~ 335 (525)
T 1tf7_A 274 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES----RAQLLRNA----------YSWG----MDF 335 (525)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC----HHHHHHHH----------HTTS----CCH
T ss_pred hCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC----HHHHHHHH----------HHcC----CCH
Confidence 3456 89999999999999999999999999888754 33333221 11111110 0111 111
Q ss_pred HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCC
Q 027509 152 REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIP 208 (222)
Q Consensus 152 ~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p 208 (222)
. .+..+++....+..+.+ |+||+||+.+|++++ +|+++|+|++.++|..
T Consensus 336 ~--------~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~ 386 (525)
T 1tf7_A 336 E--------EMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG 386 (525)
T ss_dssp H--------HHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS
T ss_pred H--------HHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh
Confidence 1 12234555556677777 999999999999999 9999999999999875
No 84
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.47 E-value=3.6e-14 Score=128.69 Aligned_cols=113 Identities=15% Similarity=-0.024 Sum_probs=74.6
Q ss_pred cCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcC-CC-CcEEEe-eccCCCCChHHHhhccEEecCchH-----HHHHhcC
Q 027509 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAV-TNDIFTKEDGEFLMRNGALPEERI-----RAVETGG 145 (222)
Q Consensus 74 ~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~-p~-G~I~i~-g~di~~~~~~e~~~~ig~v~Q~~~-----~~i~~g~ 145 (222)
.+++..+|++++|+||||||||||+++|+|++. ++ |.|.+. |....+ ...+.++++||+.. ...+++.
T Consensus 208 ~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 208 PLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp HHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred HHHHhcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHhhh
Confidence 334445799999999999999999999999999 87 999886 544321 22456899998753 1122221
Q ss_pred CCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc
Q 027509 146 CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA 192 (222)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~ 192 (222)
......+....+.++++.+++....+..+.+ | ||+||++||++++
T Consensus 284 -~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 284 -WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp -CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred -cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 1222223334566778888887778888888 9 9999999999886
No 85
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.47 E-value=1.2e-15 Score=126.49 Aligned_cols=103 Identities=18% Similarity=0.087 Sum_probs=71.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHHHHH
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL 159 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~~~ 159 (222)
|++++|+||||||||||+++|+|+++ + | |.++|.++.. ....+++++|++|+.. +....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~--~~~~~~~ig~~~~~~~-----g~~~~----------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE--VRQGGRRIGFDVVTLS-----GTRGP----------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE--EETTSSEEEEEEEETT-----SCEEE-----------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch--hHhhhceEEEEEEecc-----cceeh-----------
Confidence 78999999999999999999999999 7 9 9999887633 2234678999999741 10000
Q ss_pred HHHHhcCC-------cccccCcCCC-ChHHHHHH-HHHH---HHc-CCCeEEEecCCCC
Q 027509 160 GPLEELSN-------LFKADLLLCE-SGGDNLAA-NFSR---ELA-DYIIYIIDVSGGD 205 (222)
Q Consensus 160 ~~L~~l~l-------~~~~d~~~~e-SgGqkQrv-~iAr---AL~-~p~IlILD~t~G~ 205 (222)
+..+.. ......+... |+||++++ ++++ |++ +|+|+||||++-.
T Consensus 61 --l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~ 117 (189)
T 2i3b_A 61 --LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKM 117 (189)
T ss_dssp --EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTT
T ss_pred --hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCcc
Confidence 011111 0123334445 89999887 4444 577 9999999995443
No 86
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.46 E-value=3.9e-14 Score=123.04 Aligned_cols=126 Identities=7% Similarity=-0.127 Sum_probs=77.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C-cEEEeeccCCCCChHHHhhccEEecCchH----HHHH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERI----RAVE 142 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G-~I~i~g~di~~~~~~e~~~~ig~v~Q~~~----~~i~ 142 (222)
..++++++. .+|++++|+||||||||||+++|++.+.++ | .|.+.+.+. ...++++++.++++... .++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~~~~~~l~ 99 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRLRQSDSLK 99 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCChhhccccc
Confidence 367778888 999999999999999999999999999887 7 888777654 23444444443333211 1111
Q ss_pred hcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHH-HHHHHHHHHHc-CCCeEEEecCCC
Q 027509 143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGD-NLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGq-kQrv~iArAL~-~p~IlILD~t~G 204 (222)
.+. ....+....+.++++...+ .....+.. |.++ +|++. |++++ +|+++|+|+++.
T Consensus 100 ~~~---~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~ 158 (296)
T 1cr0_A 100 REI---IENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISI 158 (296)
T ss_dssp HHH---HHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-
T ss_pred cCC---CCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccc
Confidence 110 0000111222233332222 12223344 8888 56666 88899 999999997766
No 87
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.45 E-value=1.3e-14 Score=134.49 Aligned_cols=125 Identities=10% Similarity=0.067 Sum_probs=79.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeec---cCCCC-----ChHHHhhccEEecCchH
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTK-----EDGEFLMRNGALPEERI 138 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~---di~~~-----~~~e~~~~ig~v~Q~~~ 138 (222)
..+++++ |. .+|++++|+|||||||||||++|+|+++|+ |.|.++|. ++... ....+++.++|++|...
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~ 223 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADV 223 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTS
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCC
Confidence 4466777 88 999999999999999999999999999998 99999997 44211 11234567999998521
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHhcC--CcccccCcCCC-ChHHHHHHHHHHHHcCCCeEEEecCCCCCCC
Q 027509 139 RAVETGGCPHAAIREDISINLGPLEELS--NLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVSGGDKIP 208 (222)
Q Consensus 139 ~~i~~g~~~~~~~~~~~~~~~~~L~~l~--l~~~~d~~~~e-SgGqkQrv~iArAL~~p~IlILD~t~G~d~p 208 (222)
... ++..+.+......+.+...+ ....++. +.. |+|| ||++|| +.+|++ ++|+|..
T Consensus 224 ~~~-----~~~~v~~~~~~~ae~~~~~~~~v~~~ld~-l~~lS~g~-qrvslA--l~~p~~-----t~glD~~ 282 (438)
T 2dpy_A 224 SPL-----LRMQGAAYATRIAEDFRDRGQHVLLIMDS-LTRYAMAQ-REIALA--IGEPPA-----TKGYPPS 282 (438)
T ss_dssp CHH-----HHHHHHHHHHHHHHHHHTTTCEEEEEEEC-HHHHHHHH-HHHHHH--TTCCCC-----SSSCCTT
T ss_pred CHH-----HHHHHHHHHHHHHHHHHhCCCCHHHHHHh-HHHHHHHH-HHHHHH--hCCCcc-----cccCCHH
Confidence 100 01111111111111111111 0112232 333 9999 999998 338888 7787754
No 88
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.45 E-value=5e-14 Score=122.11 Aligned_cols=90 Identities=13% Similarity=0.252 Sum_probs=65.3
Q ss_pred CcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCC--CCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCC
Q 027509 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (222)
Q Consensus 71 ~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p--~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~ 148 (222)
++.+++ .++|++++|+|||||||||||++|+|+++| +|+|.+++.++.... ...+++++|.
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~------------ 78 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR------------ 78 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE------------
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH------------
Confidence 555566 578999999999999999999999999987 399999997763211 1112333221
Q ss_pred cchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEecCC
Q 027509 149 AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSG 203 (222)
Q Consensus 149 ~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD~t~ 203 (222)
.+++.. ...+++||++|+ +|+++|+||++
T Consensus 79 ---------------~~gl~~-----------~~l~~~la~aL~~~p~illlDEp~ 108 (261)
T 2eyu_A 79 ---------------EVGEDT-----------KSFADALRAALREDPDVIFVGEMR 108 (261)
T ss_dssp ---------------EBTTTB-----------SCHHHHHHHHHHHCCSEEEESCCC
T ss_pred ---------------HhCCCH-----------HHHHHHHHHHHhhCCCEEEeCCCC
Confidence 122111 123899999999 99999999998
No 89
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.44 E-value=1e-13 Score=124.08 Aligned_cols=119 Identities=17% Similarity=0.218 Sum_probs=76.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHH----Hhh--ccEEecCchHHHHHhcCCCCcch
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLM--RNGALPEERIRAVETGGCPHAAI 151 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e----~~~--~ig~v~Q~~~~~i~~g~~~~~~~ 151 (222)
++|++++|+||||||||||+++|+|+++|+ |+|.+.+.+++.....+ ..+ .+.+++|... ..+...+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~------~~p~~~v 200 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG------ADPAAVA 200 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT------CCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc------CCHHHHH
Confidence 679999999999999999999999999998 99999999987654433 122 3558887632 1222222
Q ss_pred HHHHHHHHHHHHhcCCcccccCcCC---CChHHHHHHHHHHHHc-CCCeEEEecCCCCC
Q 027509 152 REDISINLGPLEELSNLFKADLLLC---ESGGDNLAANFSRELA-DYIIYIIDVSGGDK 206 (222)
Q Consensus 152 ~~~~~~~~~~L~~l~l~~~~d~~~~---eSgGqkQrv~iArAL~-~p~IlILD~t~G~d 206 (222)
++....... ..... ...|..-. ...=+++...++|++. ++++++||+++|.+
T Consensus 201 ~e~l~~~~~--~~~d~-vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~ 256 (328)
T 3e70_C 201 YDAIQHAKA--RGIDV-VLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA 256 (328)
T ss_dssp HHHHHHHHH--HTCSE-EEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH
T ss_pred HHHHHHHHh--ccchh-hHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH
Confidence 222211111 11110 01111111 1223455566899999 99999999998875
No 90
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.43 E-value=4.9e-14 Score=132.62 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=53.4
Q ss_pred ccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh------HHHhhccEEecCch
Q 027509 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED------GEFLMRNGALPEER 137 (222)
Q Consensus 73 ~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~------~e~~~~ig~v~Q~~ 137 (222)
.+++|+ .+|++++|+|+||||||||+++|+|+++++ |+|.+++.++..... ...+++|+|++|..
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~ 356 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT 356 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc
Confidence 467888 889999999999999999999999999988 999999888753211 11356799999974
No 91
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.40 E-value=1.8e-15 Score=124.69 Aligned_cols=110 Identities=19% Similarity=0.266 Sum_probs=64.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcC-CCCcchHHHHHH
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISI 157 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~-~~~~~~~~~~~~ 157 (222)
++|++++|+||||||||||+++|+|++.| .|.+...+....+... . ...++..+.. .+... +...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--~i~~v~~d~~~~~~~~----~-----~~~~~~~~~~~~~~~~---~~~~ 69 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE--RVALLPMDHYYKDLGH----L-----PLEERLRVNYDHPDAF---DLAL 69 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG--GEEEEEGGGCBCCCTT----S-----CHHHHHHSCTTSGGGB---CHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEecCccccCccc----c-----cHHHhcCCCCCChhhh---hHHH
Confidence 57999999999999999999999999875 3443333221110000 0 0001111111 11111 1223
Q ss_pred HHHHHHhcCCcccccCcCCC-ChHHH----HHHHHHHHHc-CCCeEEEecC
Q 027509 158 NLGPLEELSNLFKADLLLCE-SGGDN----LAANFSRELA-DYIIYIIDVS 202 (222)
Q Consensus 158 ~~~~L~~l~l~~~~d~~~~e-SgGqk----Qrv~iArAL~-~p~IlILD~t 202 (222)
+.+.++.+++....+..+.+ |+|++ ||++++++++ +|+++++|++
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~ 120 (211)
T 3asz_A 70 YLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKE 120 (211)
T ss_dssp HHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHH
T ss_pred HHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHH
Confidence 44455666555444455555 88864 6788899998 9999999854
No 92
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.33 E-value=1.7e-13 Score=110.79 Aligned_cols=107 Identities=14% Similarity=-0.020 Sum_probs=65.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHHH
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISI 157 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~~ 157 (222)
++|++++|+||||||||||+++|++. ++ |.|.+++.++.... ...+.++|++|...... .+.+....
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~~~~--------~v~~~l~~ 74 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQQNR--------MIMQIAAD 74 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHHHHH--------HHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhhhhH--------HHHHHHHH
Confidence 67999999999999999999999998 55 89999886652111 01234677887543110 01111100
Q ss_pred HHH-HH------------HhcCCcccc--cCcCCC-ChHHHHHHHHHHHHc-CCCeE
Q 027509 158 NLG-PL------------EELSNLFKA--DLLLCE-SGGDNLAANFSRELA-DYIIY 197 (222)
Q Consensus 158 ~~~-~L------------~~l~l~~~~--d~~~~e-SgGqkQrv~iArAL~-~p~Il 197 (222)
... .. ..+.+.... +..+.. |+|++|++.++|++. +|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 75 VAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp HHHHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred HHHHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 000 00 001111111 223445 999999999999999 88876
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.31 E-value=4.4e-13 Score=126.15 Aligned_cols=72 Identities=10% Similarity=-0.011 Sum_probs=58.3
Q ss_pred CCCCCCcccCCC-C-CCCcEEEEEcCCCChHHHHHHH--HHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchH
Q 027509 66 SRRAPPILSRNF-N-ERAFTVGIGGPVGTGKTALMLA--LCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 66 ~~~~~~~~~~~~-~-~~GeivgIiGpNGSGKSTLLk~--L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
....+.+.+++| . ++|++++|+||||||||||+++ ++|+++|+ |.|++.+.+. .....+.++.+||+||++.
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence 334557889999 8 9999999999999999999999 78999977 9999999873 2222344567999999865
No 94
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.31 E-value=5e-13 Score=120.42 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=43.0
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
..+++.+ |. .+|++++|+|||||||||||++|+|++.|+ |.|.+.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 3466777 88 999999999999999999999999999998 999888854
No 95
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.30 E-value=2.4e-14 Score=132.12 Aligned_cols=119 Identities=15% Similarity=0.062 Sum_probs=74.6
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC----hHHHhhccEEec---------CchH----
Q 027509 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALP---------EERI---- 138 (222)
Q Consensus 77 ~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~----~~e~~~~ig~v~---------Q~~~---- 138 (222)
+..+|++++|+|||||||||||++|++++.++ |+|.+.+.++.... ..++...+++.| |++.
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~v 242 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMV 242 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEE
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEE
Confidence 44689999999999999999999999999987 99999998774211 011223344433 4332
Q ss_pred ----------HHHHhcCCCCc---ch-HHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEE
Q 027509 139 ----------RAVETGGCPHA---AI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (222)
Q Consensus 139 ----------~~i~~g~~~~~---~~-~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlIL 199 (222)
.++.....-+. .+ ..+...+...|..+++.... ++.. |+||+|| |||+|+ +|++..-
T Consensus 243 gEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 243 GEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp SCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred cCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 12221100000 00 00111233356667765432 4455 9999999 999999 9998753
No 96
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.30 E-value=1.1e-13 Score=122.10 Aligned_cols=107 Identities=14% Similarity=0.056 Sum_probs=70.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEE---eeccCCCCChHHHh-hccEEecCchH------------HHH
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFL-MRNGALPEERI------------RAV 141 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i---~g~di~~~~~~e~~-~~ig~v~Q~~~------------~~i 141 (222)
..|++++|+||||||||||+|+|+ +++|+ |+|.+ .|.+++... ..+. +.++||+|.|. +++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~l 240 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKPREV 240 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCGGGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCHHHH
Confidence 579999999999999999999999 99987 99999 888775432 2222 36899998762 122
Q ss_pred --Hhc----------CCCCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHH
Q 027509 142 --ETG----------GCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSR 189 (222)
Q Consensus 142 --~~g----------~~~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iAr 189 (222)
.+. .|.+. .+....+.++|+.+++.. ..++++.. |+.++++++|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~--~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHT--NEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSS--SCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCC--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 01010 111235677899999875 67777777 877677788886
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.30 E-value=4.3e-13 Score=112.06 Aligned_cols=58 Identities=17% Similarity=0.064 Sum_probs=41.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHH--cCcCCC-CcEEEeeccCCCCChHHHhhccEEecCch
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALC--KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~--Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~ 137 (222)
++|++++|+||||||||||+++|+ +++.+. +.+.+.+.+. .....+..+.+++++|+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 88 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFGWDFEKY 88 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTTCCHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC-HHHHHHHHHHcCCChHHH
Confidence 889999999999999999999999 664554 6666665433 111223345678887764
No 98
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.29 E-value=5.5e-13 Score=134.75 Aligned_cols=102 Identities=17% Similarity=0.036 Sum_probs=66.8
Q ss_pred CCCcccCCCC-CC-------CcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccE-EecCchHH
Q 027509 69 APPILSRNFN-ER-------AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNG-ALPEERIR 139 (222)
Q Consensus 69 ~~~~~~~~~~-~~-------GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig-~v~Q~~~~ 139 (222)
..++++++|. ++ |++++|+||||||||||||+| |++.+ ..++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC-
Confidence 4577888988 55 899999999999999999999 98752 23455 8998753
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecC-CCCC
Q 027509 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVS-GGDK 206 (222)
Q Consensus 140 ~i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t-~G~d 206 (222)
.++..... +..+++.........+ |++|++ +++|++++ +|+++||||+ .|.|
T Consensus 828 --~l~v~d~I------------~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd 882 (1022)
T 2o8b_B 828 --RLTPIDRV------------FTRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTA 882 (1022)
T ss_dssp --EECCCSBE------------EEECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSC
T ss_pred --CCCHHHHH------------HHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCC
Confidence 12222111 1223333322233344 666654 99999999 9999999966 4555
No 99
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.26 E-value=5.9e-13 Score=107.34 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=49.2
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCch
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~ 137 (222)
+++.++|+ ++|++++|+||||||||||+|+|+|++ |+ |+|.+.|.++.. ..+. . .++||++
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~--~~~~-~--~~~~q~~ 84 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE--EYNI-A--GKMIYHF 84 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE--EEEE-T--TEEEEEE
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee--eccC-C--Ccceecc
Confidence 56678899 999999999999999999999999999 77 999999987742 1111 1 2678864
No 100
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.25 E-value=2.3e-12 Score=116.24 Aligned_cols=63 Identities=16% Similarity=-0.001 Sum_probs=49.2
Q ss_pred ccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEec-Cch
Q 027509 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP-EER 137 (222)
Q Consensus 73 ~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~-Q~~ 137 (222)
..++|. ++|++++|+||||||||||+++|+++++|+ |.|.+++..- ......+..++|++ |+.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e--~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE--LFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC--CCCTTCSSEEEEECC---
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc--cCccccCCEEEEeecCcc
Confidence 677888 899999999999999999999999999998 9999987532 11222345688998 653
No 101
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.25 E-value=5.3e-12 Score=108.91 Aligned_cols=109 Identities=15% Similarity=-0.005 Sum_probs=69.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCc-hHHHH-----HhcCCCCcchH
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE-RIRAV-----ETGGCPHAAIR 152 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~-~~~~i-----~~g~~~~~~~~ 152 (222)
++|++++|+||||||||||++.|++.+. .|.+. .|..+.. ...+.|+..+ ....+ .++.. ..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~-~g~~~~~------~~~v~~~~~e~~~~~~~~r~~~~g~~--~~-- 95 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDL-LEVGELP------TGPVIYLPAEDPPTAIHHRLHALGAH--LS-- 95 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCT-TCCCCCC------CCCEEEEESSSCHHHHHHHHHHHHTT--SC--
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCc-CCCccCC------CccEEEEECCCCHHHHHHHHHHHHhh--cC--
Confidence 6899999999999999999999999664 34442 2332211 1235555432 22111 11111 00
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 153 EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 153 ~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
.....++++.+.+....+..+.. |+||+|++ ++++ +|+++|||+++.
T Consensus 96 --~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~ 144 (279)
T 1nlf_A 96 --AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRR 144 (279)
T ss_dssp --HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGG
T ss_pred --hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHH
Confidence 11233456677666666777777 99997754 6888 999999997665
No 102
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.24 E-value=1.2e-12 Score=106.64 Aligned_cols=128 Identities=11% Similarity=-0.006 Sum_probs=65.8
Q ss_pred CC-CCCcEEEEEcCCCChHHHHHHHHHcCc-----CCC-CcEEEee-------ccC---CCCC--------hHHHhhccE
Q 027509 77 FN-ERAFTVGIGGPVGTGKTALMLALCKFL-----RDK-YSLAAVT-------NDI---FTKE--------DGEFLMRNG 131 (222)
Q Consensus 77 ~~-~~GeivgIiGpNGSGKSTLLk~L~Gll-----~p~-G~I~i~g-------~di---~~~~--------~~e~~~~ig 131 (222)
|. .+|+.++|+|+||||||||+++|+|.. .|+ |.+.+.+ ..+ .... ...+++.++
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 77 889999999999999999999999988 666 7654322 111 0000 011111122
Q ss_pred EecCchH--HHH--HhcCCCCcchHHHHHHHHHHHHhcCCccc-ccCcCCC-ChHHHHH-HHHHHHHc-CCCeEEEe-cC
Q 027509 132 ALPEERI--RAV--ETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLA-ANFSRELA-DYIIYIID-VS 202 (222)
Q Consensus 132 ~v~Q~~~--~~i--~~g~~~~~~~~~~~~~~~~~L~~l~l~~~-~d~~~~e-SgGqkQr-v~iArAL~-~p~IlILD-~t 202 (222)
+++|... ..+ ..-...... .....+.+.+...++... ....+.. |+||+|+ +.++++++ +|.++++| ++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 2222100 000 000000011 111233444555554432 2333445 9999999 89999999 88888888 55
Q ss_pred CCCC
Q 027509 203 GGDK 206 (222)
Q Consensus 203 ~G~d 206 (222)
++.+
T Consensus 179 Sal~ 182 (210)
T 1pui_A 179 SSLK 182 (210)
T ss_dssp BTTT
T ss_pred eecC
Confidence 5554
No 103
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.24 E-value=2.4e-12 Score=128.74 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=63.2
Q ss_pred CCCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 69 ~~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
..+.++++|+ ++|++++|+||||||||||||+|+++.... +.-.++|+... .++...
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-------------------q~g~~vpa~~~---~i~~~d 717 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-------------------QIGSYVPAEEA---TIGIVD 717 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------HHTCCBSSSEE---EEECCS
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------hcCccccchhh---hhhHHH
Confidence 3467899999 889999999999999999999998653210 00112222110 001000
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHcCCCeEEEec-CCCCCC
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDV-SGGDKI 207 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~~p~IlILD~-t~G~d~ 207 (222)
.++..+++.......+.+ |+||+|++.|++++.+|+|+|||| +.|.|.
T Consensus 718 ------------~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 718 ------------GIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTST 767 (918)
T ss_dssp ------------EEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCH
T ss_pred ------------HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Confidence 012233333334445566 999999999999833999999994 556664
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.23 E-value=1.8e-12 Score=127.60 Aligned_cols=94 Identities=13% Similarity=-0.028 Sum_probs=66.0
Q ss_pred CCCcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcC-CC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCC
Q 027509 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (222)
Q Consensus 69 ~~~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~-p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~ 146 (222)
..++++++|+ |++++|+||||||||||||+|+|+.. ++ |.+. . . .+..+++++|- +
T Consensus 566 ~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-------p---a-~~~~i~~v~~i------~--- 623 (765)
T 1ewq_A 566 EFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-------P---A-EEAHLPLFDGI------Y--- 623 (765)
T ss_dssp CCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-------S---S-SEEEECCCSEE------E---
T ss_pred ceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-------e---h-hccceeeHHHh------h---
Confidence 3467888888 99999999999999999999999874 45 7532 0 0 12356776651 1
Q ss_pred CCcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHH--c-CCCeEEEecC
Q 027509 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL--A-DYIIYIIDVS 202 (222)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL--~-~p~IlILD~t 202 (222)
+.....++. ....|.+|++++.++++| + +|+++|||||
T Consensus 624 ~~~~~~d~l------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 624 TRIGASDDL------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp EECCC------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred ccCCHHHHH------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 111111110 011289999999999999 8 9999999986
No 105
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.20 E-value=4.4e-13 Score=120.46 Aligned_cols=112 Identities=11% Similarity=-0.031 Sum_probs=66.0
Q ss_pred ccCCCC-CC--CcEEEEEcCCCChHHHHHHHHHcCcCCC-----CcEEEe----eccCCCCChHHHhhccEEecCchHHH
Q 027509 73 LSRNFN-ER--AFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAV----TNDIFTKEDGEFLMRNGALPEERIRA 140 (222)
Q Consensus 73 ~~~~~~-~~--GeivgIiGpNGSGKSTLLk~L~Gll~p~-----G~I~i~----g~di~~~~~~e~~~~ig~v~Q~~~~~ 140 (222)
..+++. .+ ++.++|+||||||||||+++|+|++.|+ |+|.++ +.++ .....++ ..|++++|++...
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDY 236 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHH
Confidence 457777 78 9999999999999999999999999873 677653 3332 2222223 3466666654311
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHH-c-CCCeEEEec
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSREL-A-DYIIYIIDV 201 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL-~-~p~IlILD~ 201 (222)
......... .+. ....+..+.. |+|++|+..+++++ . +|+++||||
T Consensus 237 -~~t~~~nl~-------------~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE 285 (365)
T 1lw7_A 237 -AVRHSHKIA-------------FID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLK 285 (365)
T ss_dssp -HHHHCSSEE-------------EES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEE
T ss_pred -HHhccCCEE-------------EEe-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECC
Confidence 100000000 000 0001111112 55667777777766 3 899999996
No 106
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.19 E-value=2.4e-11 Score=107.75 Aligned_cols=94 Identities=28% Similarity=0.288 Sum_probs=68.4
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchH
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR 152 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~ 152 (222)
+++. .++++++|+|||||||||++..|++++.++ ++|.+.+.|+.. .. ++ +
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~~-------a~-----e------------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--AA-------AI-----E------------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--HH-------HH-----H-------------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--HH-------HH-----H-------------
Confidence 4555 679999999999999999999999999987 799998887632 11 00 0
Q ss_pred HHHHHHHHHHHhcCCcccccCcCCCChHHHHHH---HHHHHHc-CCCeEEEecCC
Q 027509 153 EDISINLGPLEELSNLFKADLLLCESGGDNLAA---NFSRELA-DYIIYIIDVSG 203 (222)
Q Consensus 153 ~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv---~iArAL~-~p~IlILD~t~ 203 (222)
+...+++.+++.... ..|+|+.+++ +|++++. +|+++|+|+++
T Consensus 150 ----qL~~~~~~~gl~~~~----~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 150 ----QLKIWGERVGATVIS----HSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp ----HHHHHHHHHTCEEEC----CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred ----HHHHHHHHcCCcEEe----cCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 111233444443221 1288899988 8888898 99999999775
No 107
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.19 E-value=5.7e-14 Score=123.78 Aligned_cols=113 Identities=19% Similarity=0.094 Sum_probs=52.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC-cCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHH-----hcCCCCcchHHHH
Q 027509 83 TVGIGGPVGTGKTALMLALCKF-LRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE-----TGGCPHAAIREDI 155 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl-l~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~-----~g~~~~~~~~~~~ 155 (222)
.++|+|||||||||||++|+|. +.|+ | |.+.+.++.. ..+ .+.+++++|....... +.+... ... ..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~--t~~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~-~~~-~~ 93 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER--TVQ-IEASTVEIEERGVKLRLTVVDTPGYGD-AIN-CR 93 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC--cce-EeeEEEEecCCCcccCcchhhhhhhhh-hcC-cH
Confidence 3699999999999999999997 7777 8 8877776532 112 3457888886431111 111100 000 00
Q ss_pred HHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHcCCCeEEEecCC--CCC
Q 027509 156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVSG--GDK 206 (222)
Q Consensus 156 ~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~~p~IlILD~t~--G~d 206 (222)
......++.+ ....+.++.+ |+|||||+.+|||++ ++++|+|+ |+|
T Consensus 94 e~~~~l~~~l--~~~~~~~~~~~sgg~rqrv~~ara~~---ll~ldePt~~~Ld 142 (301)
T 2qnr_A 94 DCFKTIISYI--DEQFERYLHDESGLNRRHIIDNRVHC---CFYFISPFGHGLK 142 (301)
T ss_dssp --CTTHHHHH--HHHHHHHHHHHTSSCCTTCCCCCCCE---EEEEECSSSSSCC
T ss_pred HHHHHHHHHH--HHHHHHHHHHhCHHhhhhhhhhhhhh---eeeeecCcccCCC
Confidence 0000111111 1223455666 999999998888876 88888764 355
No 108
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.19 E-value=1.3e-11 Score=109.97 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=30.2
Q ss_pred cCcCCC-ChHHHH------HHHHHHHHc-CCCeEEEe-cCCCCCCC
Q 027509 172 DLLLCE-SGGDNL------AANFSRELA-DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 172 d~~~~e-SgGqkQ------rv~iArAL~-~p~IlILD-~t~G~d~p 208 (222)
++.+.+ |+|||| |+++|++|+ +|++|||| |+.++|..
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~ 288 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEE 288 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHH
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHH
Confidence 456777 999999 677888888 99999999 66677753
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.19 E-value=5.7e-12 Score=103.62 Aligned_cols=118 Identities=15% Similarity=0.008 Sum_probs=70.3
Q ss_pred CcccCCC-C-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCC
Q 027509 71 PILSRNF-N-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (222)
Q Consensus 71 ~~~~~~~-~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~ 147 (222)
.++.+.+ . ++|++++|+||||||||||+++|++.+.++ |.|.+.+.+.......+....+++.+|..... .+....
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 89 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLIIID 89 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEEEe
Confidence 4555655 4 789999999999999999999999988776 88888876552111111122344444432110 000000
Q ss_pred CcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCC--eEEEecCCCC
Q 027509 148 HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI--IYIIDVSGGD 205 (222)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~--IlILD~t~G~ 205 (222)
.. ...+. ....... |.++.++...+.+.. +|+ ++|+|+++..
T Consensus 90 ~~------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 90 AL------------MKEKE----DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp CC------------C--------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred cc------------ccccC----ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 00 00000 0111123 888888777776666 999 9999977743
No 110
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.19 E-value=9.2e-12 Score=101.40 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=43.6
Q ss_pred CCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH
Q 027509 76 NFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 76 ~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
|++ .+|++++|+||||||||||+++|+++++ .+.+.+..+........+..++|+||++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDET 61 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHH
Confidence 345 6899999999999999999999999974 46666655443222223457899999876
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.18 E-value=1.2e-11 Score=111.84 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=57.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC--CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHH
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS 156 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~--G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~ 156 (222)
.++++++|+|||||||||||++|+|++.++ |.|...+.++... .....++++|... +. ....
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~----~~~~~~~v~q~~~-----~~-~~~~------ 184 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV----HESKKCLVNQREV-----HR-DTLG------ 184 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSSSEEEEEEB-----TT-TBSC------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh----hhccccceeeeee-----cc-ccCC------
Confidence 678899999999999999999999999875 5665555444211 1123445554321 00 0011
Q ss_pred HHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEecCCC
Q 027509 157 INLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSGG 204 (222)
Q Consensus 157 ~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD~t~G 204 (222)
..+ +||+||. +|+++|+||++.
T Consensus 185 ----------------------~~~----~La~aL~~~PdvillDEp~d 207 (356)
T 3jvv_A 185 ----------------------FSE----ALRSALREDPDIILVGEMRD 207 (356)
T ss_dssp ----------------------HHH----HHHHHTTSCCSEEEESCCCS
T ss_pred ----------------------HHH----HHHHHhhhCcCEEecCCCCC
Confidence 110 8999999 999999999973
No 112
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.17 E-value=2.6e-13 Score=112.45 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=34.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHcCcCC---C-CcEEEeeccC
Q 027509 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDI 118 (222)
Q Consensus 78 ~~~GeivgIiGpNGSGKSTLLk~L~Gll~p---~-G~I~i~g~di 118 (222)
.++|++++|+||||||||||+++|+|+++| + |.|.+++..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 467999999999999999999999999985 4 6677666554
No 113
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.17 E-value=8.5e-12 Score=102.89 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC-------C-CcEEEeecc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-------K-YSLAAVTND 117 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p-------~-G~I~i~g~d 117 (222)
++|++++|+||||||||||+++|+|++.+ . +.|++++.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 78999999999999999999999996554 2 356666654
No 114
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.16 E-value=1.8e-11 Score=110.95 Aligned_cols=83 Identities=14% Similarity=0.293 Sum_probs=62.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC--CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcchHHHHH
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS 156 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~--G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~~~~~~~ 156 (222)
++|++++|+|||||||||||++|++++.|+ |+|.+.+.++.. ..+..+++++|..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~----~~~~~~~~v~Q~~------------------- 190 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY----VFKHKKSIVNQRE------------------- 190 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS----CCCCSSSEEEEEE-------------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh----hhccCceEEEeee-------------------
Confidence 689999999999999999999999999874 999888866531 2345678888741
Q ss_pred HHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCCeEEEecCC
Q 027509 157 INLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSG 203 (222)
Q Consensus 157 ~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~IlILD~t~ 203 (222)
+++.. . + .+.+|+++|. +|+++|+||+.
T Consensus 191 --------~g~~~--~-----~----~~~~l~~~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 191 --------VGEDT--K-----S----FADALRAALREDPDVIFVGEMR 219 (372)
T ss_dssp --------BTTTB--S-----C----SHHHHHHHTTSCCSEEEESCCC
T ss_pred --------cCCCH--H-----H----HHHHHHHHhhhCcCEEEECCCC
Confidence 11110 0 0 0458888888 99999999887
No 115
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.14 E-value=3.4e-12 Score=114.19 Aligned_cols=68 Identities=26% Similarity=0.193 Sum_probs=55.9
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCCh----HHHhhccEEecCchH
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERI 138 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~----~e~~~~ig~v~Q~~~ 138 (222)
++.+++|. .+|++++|+||||||||||+++|+|++.|+ |+|.+.+.++..... ...++++++++|++.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 56778898 899999999999999999999999999998 999999988753221 123567899998653
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.13 E-value=1.3e-11 Score=104.27 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=46.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC--C-CcEEEeeccCCCCChHHHhhccEEecCchHH
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR 139 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p--~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~ 139 (222)
++|++++|+||||||||||+++|+|+++| . |.|.+.+.+... ..+..++|+||++..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~ 73 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDE 73 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHH
Confidence 68999999999999999999999999986 4 888888765522 124578999998753
No 117
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.10 E-value=2.7e-11 Score=106.42 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=40.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEE---eeccCCCCChHHHhhccEEecCchH
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i---~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
..|++++|+|||||||||||++|+|+++|+ |+|.+ .|.+++........+.++||+|.+.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCS
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 579999999999999999999999999998 99999 8887754321111236899999873
No 118
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.10 E-value=4.2e-11 Score=120.08 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=30.2
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALC 102 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~ 102 (222)
.+.++++|. ++|++++|+||||||||||||+|+
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 467889999 789999999999999999999993
No 119
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.09 E-value=7.6e-11 Score=93.62 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCCC--cEEEeeccC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDI 118 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~G--~I~i~g~di 118 (222)
+|++++|+||||||||||+++|++.+.+.| .+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 899999999999999999999999988776 666666554
No 120
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.09 E-value=2.2e-13 Score=118.51 Aligned_cols=113 Identities=18% Similarity=0.091 Sum_probs=73.7
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHH---------H
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIR---------A 140 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~---------~ 140 (222)
++.++++. ++| ++|+||||||||||+++|++.+.+ +.|.+++.++......+..++++++||.... +
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~De 111 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDE 111 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeeh
Confidence 44567888 677 999999999999999999998766 6889999888655445556678888876421 1
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeE
Q 027509 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (222)
Q Consensus 141 i~~g~~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~Il 197 (222)
+.... ..+.. .. ... .....+.++.+ ||||+|++.|++|+. +|+++
T Consensus 112 id~~~----~~r~~-~~----~~~--~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 112 VDALC----PRRSD-RE----TGA--SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp CTTTC----C----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhh----cccCC-Cc----chH--HHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 11100 00100 00 000 11233445556 889999988888888 78764
No 121
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.08 E-value=1e-11 Score=119.22 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=37.3
Q ss_pred EEEEcCCCChHHHHHHHHHcCcCC-C-CcEEEeeccCCCC---ChHHHhhccEEecCch
Q 027509 84 VGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTK---EDGEFLMRNGALPEER 137 (222)
Q Consensus 84 vgIiGpNGSGKSTLLk~L~Gll~p-~-G~I~i~g~di~~~---~~~e~~~~ig~v~Q~~ 137 (222)
++|+|||||||||||++|+|++.| + |.|+++|.++... ...++++.++|+||++
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 106 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI 106 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Confidence 999999999999999999999988 5 9999999875211 1234567899999974
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.08 E-value=4.1e-13 Score=118.96 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc--------CCC-CcEEEeeccCCC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL--------RDK-YSLAAVTNDIFT 120 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll--------~p~-G~I~i~g~di~~ 120 (222)
-++++|+|+|||||||||++|+++. .++ |+|.+++.++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC
Confidence 4689999999999999999999987 677 999999988754
No 123
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.06 E-value=6.3e-11 Score=107.24 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.8
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
+..++|+ .+| +++|+|||||||||||++|++
T Consensus 17 ~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 17 LAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3456667 667 999999999999999999997
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=1.2e-11 Score=114.55 Aligned_cols=60 Identities=22% Similarity=0.091 Sum_probs=41.0
Q ss_pred cccCCCC-CCCcE--EEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH
Q 027509 72 ILSRNFN-ERAFT--VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 72 ~~~~~~~-~~Gei--vgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
+.+++|+ ++|++ ++|+|||||||||||++|+|+.- +|.++........++.++|++|+..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-------~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-------EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCEEEEEEEEEEC--
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-------cCCcCCCCCccceEeeEEEEeecCc
Confidence 8889999 99999 99999999999999999999841 2222211111223457899999754
No 125
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.05 E-value=3.7e-11 Score=112.71 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=45.1
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~ 120 (222)
++.+++|+ ++ ++++|+|||||||||||++|+|+++|+ |+|.++|.++..
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 56788999 78 999999999999999999999999998 999999988754
No 126
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.03 E-value=1.1e-11 Score=114.32 Aligned_cols=121 Identities=13% Similarity=0.035 Sum_probs=69.8
Q ss_pred ccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCch-H--HHHHhcCC-C
Q 027509 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER-I--RAVETGGC-P 147 (222)
Q Consensus 73 ~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~-~--~~i~~g~~-~ 147 (222)
.+++|+ +.+++++|+|+|||||||||++|++..+ .+.+.+..+. ...+++|+++. . ....+.+. .
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----~i~~~~ftTl-----~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----KIAPYPFTTL-----SPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----EECCCTTCSS-----CCEEEEEECSSSCEEEEEECCCCCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----cccCccccee-----cceeeEEEecCcceEEEEecccccc
Confidence 467788 8899999999999999999999999843 2222222221 12345554432 0 00011111 0
Q ss_pred ----Ccch-HHHHHH---HHHHHHhcCCcccccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecCCCCCCCc
Q 027509 148 ----HAAI-REDISI---NLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIPR 209 (222)
Q Consensus 148 ----~~~~-~~~~~~---~~~~L~~l~l~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t~G~d~p~ 209 (222)
...+ ...... +..++..+++. +..+.+ |+|++|++.++++|+ .|.|+|+ +.+|.+.
T Consensus 218 ~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl---NKlDl~~ 283 (416)
T 1udx_A 218 GASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL---NKVDLLE 283 (416)
T ss_dssp CGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE---ECCTTSC
T ss_pred chhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE---ECCChhh
Confidence 0001 011110 11112222222 344445 999999999999999 9999999 7777653
No 127
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.03 E-value=6.1e-11 Score=117.25 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=33.1
Q ss_pred CCcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 70 ~~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.++++++|+++|++++|+||||||||||||+|+|+..
T Consensus 596 ~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 596 FIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeeecccccCCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 4678888888899999999999999999999999753
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.01 E-value=1.3e-12 Score=110.69 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHH---cCcCCC-CcEEEeecc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLAAVTND 117 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~---Gll~p~-G~I~i~g~d 117 (222)
.++++++|+||||||||||+++|+ |+..++ |+|.+++.+
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 357999999999999999999999 999988 998887654
No 129
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.01 E-value=8.4e-11 Score=105.63 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=68.0
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc--CCC-----Cc-EEEeeccCCCCChHHHhhccEEecCchHHHHHhcC
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-----YS-LAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG 145 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll--~p~-----G~-I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~ 145 (222)
+.+. ++|++++|+||||||||||+++|++.+ +|+ |+ |++++.+.. . ++++++++|.. +.
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~----~~~i~~i~q~~------~~ 191 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNR------GL 191 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--C----HHHHHHHHHTT------TC
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--C----HHHHHHHHHHc------CC
Confidence 3567 899999999999999999999999987 443 46 788776542 1 23455555542 11
Q ss_pred CCCcchHHHHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc--------CCCeEEEecCCCC
Q 027509 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA--------DYIIYIIDVSGGD 205 (222)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~--------~p~IlILD~t~G~ 205 (222)
. . . ..++.+.+.. ...|.+++|++.++++++ +|+++|+|+++..
T Consensus 192 ~----~--~-----~v~~ni~~~~-----~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 192 D----P--D-----EVLKHIYVAR-----AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp C----H--H-----HHGGGEEEEE-----CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred C----H--H-----HHhhCEEEEe-----cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 0 0 0 1222221111 011678899999999887 4899999966554
No 130
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.00 E-value=1.7e-10 Score=94.65 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=43.5
Q ss_pred CCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchH
Q 027509 76 NFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 76 ~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
.++ .+|++++|+||||||||||+++|++.+ |.+.+++.++.. .....+..+++++|+..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~-~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHS-PENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSC-HHHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEccccccc-HHHHHHHhcCCCCCCcc
Confidence 344 689999999999999999999999987 889999887742 11122335788888754
No 131
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.99 E-value=3.4e-11 Score=105.84 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=66.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCC----cEEEeeccCCCCChHHHhhccEEecCchHHHHHhc----------
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY----SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG---------- 144 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G----~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g---------- 144 (222)
.++.+++|+|++|||||||+++|++++.+.| .+.+...|-+..+..+ + .++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~-~-----------~~l~~~~~~~~l~~~~ 96 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHED-Q-----------LKLNEQFKNNKLLQGR 96 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHH-H-----------HHHHHHTTTCGGGSSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHH-H-----------HHHhccccccchhhhc
Confidence 5689999999999999999999999997643 2333233222221111 1 222211
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCc------c--cccCcCCC-ChHHHHHHHHHHHHc-CCCeEEEecC-CCCCC
Q 027509 145 GCPHAAIREDISINLGPLEELSNL------F--KADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVS-GGDKI 207 (222)
Q Consensus 145 ~~~~~~~~~~~~~~~~~L~~l~l~------~--~~d~~~~e-SgGqkQrv~iArAL~-~p~IlILD~t-~G~d~ 207 (222)
+.+... +.....+.++.+... . ....+-.. ||||+||+.+|++.+ +|+|+|+|+. .+.|.
T Consensus 97 g~p~a~---d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~ 167 (290)
T 1odf_A 97 GLPGTH---DMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP 167 (290)
T ss_dssp CSTTSB---CHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred cCcchh---HHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCc
Confidence 112211 122334445554322 1 12223344 999999999985454 9999999965 55664
No 132
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.96 E-value=4.3e-11 Score=110.40 Aligned_cols=117 Identities=14% Similarity=-0.016 Sum_probs=56.7
Q ss_pred CCcccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCC
Q 027509 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (222)
Q Consensus 70 ~~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~ 148 (222)
.++.+++|+ ++|+|+|||||||||++|+|+..+. |. .+..+... .......+++++|+......+.....
T Consensus 25 ~vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~-~t~~~~~i~~v~q~~~~~~~Ltv~Dt 95 (418)
T 2qag_C 25 SVKRGFEFT-----LMVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIK-KTVQVEQSKVLIKEGGVQLLLTIVDT 95 (418)
T ss_dssp TCC-CCCEE-----EEEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC------CCEEEEEECC------CEEEEEEEC
T ss_pred EEecCCCEE-----EEEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCc-cceeeeeEEEEEecCCcccceeeeec
Confidence 455555554 6999999999999999999998754 41 12111100 00112357888776432111110000
Q ss_pred cchHH------HHHHHHHHHHhcCCcccccCcCCCChHHHHHHHHHHHHc-CCC---eEEEecCC--CCC
Q 027509 149 AAIRE------DISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYI---IYIIDVSG--GDK 206 (222)
Q Consensus 149 ~~~~~------~~~~~~~~L~~l~l~~~~d~~~~eSgGqkQrv~iArAL~-~p~---IlILD~t~--G~d 206 (222)
..+.. ....+.+.++. .+ +.+++|++.|||+++ +|+ ++++|+|+ |++
T Consensus 96 ~g~~~~~~~~~~~~~i~~~i~~-----~~------~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~ 154 (418)
T 2qag_C 96 PGFGDAVDNSNCWQPVIDYIDS-----KF------EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK 154 (418)
T ss_dssp C-----------CHHHHHHHHH-----HH------HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC
T ss_pred hhhhhhccchhhHHHHHHHHHH-----HH------HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC
Confidence 00000 00111111111 01 445678899999999 999 89999775 554
No 133
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.94 E-value=3.7e-11 Score=102.40 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=37.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChH--------HHhhccEEecCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG--------EFLMRNGALPEE 136 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~--------e~~~~ig~v~Q~ 136 (222)
++++|+|||||||||||++|+|++.|+ |.|.+++.++....+. .++.+++|++|+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 899999999999999999999999998 9999999887432211 124578999975
No 134
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.90 E-value=5.3e-10 Score=98.39 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=42.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC--CC-CcEEE---eeccCCCCChHHHhhccEEecCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAA---VTNDIFTKEDGEFLMRNGALPEE 136 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~--p~-G~I~i---~g~di~~~~~~e~~~~ig~v~Q~ 136 (222)
.+|+++||+||||||||||+++|+|++. |+ |+|.+ ++... .. ..++.++++ |.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~---~~-~~~~~~~~v-q~ 136 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH---PN-QVLKERGLM-KK 136 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC---CH-HHHHHHTCT-TC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC---cH-HHHHhCCEe-ec
Confidence 6799999999999999999999999988 87 99999 66553 22 334557777 54
No 135
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.89 E-value=1.2e-09 Score=89.34 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEee
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g 115 (222)
++|++++|+||||||||||++.|++ .+.+.+.+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~ 52 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVD 52 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEE
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEE
Confidence 7899999999999999999999999 3344444433
No 136
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.88 E-value=6.2e-10 Score=93.08 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=21.9
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHH-cCcCC
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALC-KFLRD 107 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~-Gll~p 107 (222)
...++|+ ++|++++|+||||||||||+++|+ +++++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4578898 899999999999999999999999 99843
No 137
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.87 E-value=4.4e-10 Score=96.03 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=49.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHH---cCcCCC-CcEE--------EeeccCCC-CChHHHhhccEEecCch
Q 027509 78 NERAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLA--------AVTNDIFT-KEDGEFLMRNGALPEER 137 (222)
Q Consensus 78 ~~~GeivgIiGpNGSGKSTLLk~L~---Gll~p~-G~I~--------i~g~di~~-~~~~e~~~~ig~v~Q~~ 137 (222)
..+|++++|+||||||||||+++|+ |+..++ |.|. .+|.++.. ....++++.++++||..
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 3789999999999999999999999 998888 9988 77877733 33456777899998653
No 138
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.86 E-value=5.9e-10 Score=91.81 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+|++++|+||||||||||+++|+|+++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 689999999999999999999999875
No 139
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.86 E-value=1.3e-11 Score=106.22 Aligned_cols=63 Identities=25% Similarity=0.151 Sum_probs=44.3
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCc
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~ 136 (222)
.+.++++. ++| +.|+||||||||||+++|++.+. .+.|.+++.++......+..+.++++||.
T Consensus 64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 127 (278)
T 1iy2_A 64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFET 127 (278)
T ss_dssp HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567777 667 99999999999999999999875 57888888665322222223345555554
No 140
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.86 E-value=3.5e-10 Score=100.41 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=34.5
Q ss_pred CC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEE---eeccCCCCChHHHhhccEEecCch
Q 027509 77 FN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEER 137 (222)
Q Consensus 77 ~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i---~g~di~~~~~~e~~~~ig~v~Q~~ 137 (222)
++ .+|++++|+||||||||||+|+|+|+++++ |.|.+ .|..++... ..+...++|++|.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtp 232 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTP 232 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCC
Confidence 44 679999999999999999999999999987 99998 777664321 11122379998875
No 141
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.85 E-value=9.2e-09 Score=90.27 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=41.2
Q ss_pred ccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCC
Q 027509 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (222)
Q Consensus 73 ~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~ 119 (222)
..++|+ ++++++|+|+||+||||++..|++++.+. |+|.+.+.|+.
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 456777 89999999999999999999999999987 89999998874
No 142
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.83 E-value=1e-09 Score=89.09 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
|++++|+||||||||||+++|++++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5789999999999999999999999855
No 143
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.81 E-value=1.7e-09 Score=89.81 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHc--CcCC-----C-CcEEEeecc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCK--FLRD-----K-YSLAAVTND 117 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~G--ll~p-----~-G~I~i~g~d 117 (222)
++|++++|+||||||||||++.|++ ++++ . +.+++.+.+
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 6899999999999999999999999 5654 4 667777654
No 144
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.79 E-value=3.6e-09 Score=86.63 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=39.7
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcE--EEeeccC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSL--AAVTNDI 118 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I--~i~g~di 118 (222)
...+..+. .+|++++|+||||||||||+++|++.+...|.+ ++++.++
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 33455555 789999999999999999999999998844887 8887765
No 145
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.77 E-value=2.1e-10 Score=93.03 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCC-----------C-CcEEEeecc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRD-----------K-YSLAAVTND 117 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p-----------~-G~I~i~g~d 117 (222)
--.++|+|+||||||||+++|++...+ . |.|.+++.+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 357999999999999999999998764 3 566666654
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=2.4e-09 Score=94.11 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=31.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHc-CcCCC-CcEEEeeccCCCCChHHHhhccEEecCch
Q 027509 82 FTVGIGGPVGTGKTALMLALCK-FLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~G-ll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~ 137 (222)
..+.|.||||+|||||+++|++ ++.++ |.|.+++.++.. +...+..+++++|..
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~--~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT--ASNRKLELNVVSSPY 92 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc--cccccceeeeecccc
Confidence 3399999999999999999999 77887 999998876532 222245678887764
No 147
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.74 E-value=1.3e-08 Score=81.67 Aligned_cols=34 Identities=38% Similarity=0.486 Sum_probs=29.7
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
.+|. .+|+.++|+||||||||||+++|++.+.++
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 65 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK 65 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3566 679999999999999999999999988754
No 148
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.72 E-value=3.2e-08 Score=86.94 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=37.9
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C-cEEEeeccCC
Q 027509 76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIF 119 (222)
Q Consensus 76 ~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G-~I~i~g~di~ 119 (222)
.|..+|++++|+|||||||||++..|++.+.++ | +|.+.+.|..
T Consensus 100 ~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 100 QEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred cccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 345679999999999999999999999999874 7 7888887763
No 149
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.69 E-value=7.4e-09 Score=83.99 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=39.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C-cEEEeeccCCCCChHHHhhccEEecCchH
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G-~I~i~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
.+|++++|+||||||||||+++|++++.|+ | .+....... .. ....+++|+||++.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~---~~-~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQM---RE-GEVDGVDYFFKTRD 61 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCC---CT-TCCBTTTBEECCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCC---CC-CccCCCceEEcCHH
Confidence 579999999999999999999999999766 5 332222111 01 11234788888765
No 150
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.62 E-value=6.3e-09 Score=98.10 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=40.6
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
+..+++. ++|++++|+|||||||||||++|+|+++|+ |.|.+.+..
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 3456677 889999999999999999999999999998 999988764
No 151
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.61 E-value=3.9e-10 Score=99.99 Aligned_cols=55 Identities=20% Similarity=0.093 Sum_probs=37.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc----CCC-CcEEEeeccCCCCChHHH-hhccEEecCch
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL----RDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEER 137 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll----~p~-G~I~i~g~di~~~~~~e~-~~~ig~v~Q~~ 137 (222)
+.++|+||||+|||||+++|++.+ .++ |.+.+.+.++... .... ...|.|++|..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~-~~~~~~~~v~~iDE~~ 112 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI-LTSLERGDVLFIDEIH 112 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH-HHHCCTTCEEEEETGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH-HHHccCCCEEEEcchh
Confidence 789999999999999999999988 444 6655544443110 0011 24578888754
No 152
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.59 E-value=2.5e-08 Score=91.36 Aligned_cols=65 Identities=22% Similarity=0.153 Sum_probs=43.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHH--HcCcCCC-C-----cEEEeeccCCCC-ChHHHhhccEEecCchHHHHHh
Q 027509 79 ERAFTVGIGGPVGTGKTALMLAL--CKFLRDK-Y-----SLAAVTNDIFTK-EDGEFLMRNGALPEERIRAVET 143 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L--~Gll~p~-G-----~I~i~g~di~~~-~~~e~~~~ig~v~Q~~~~~i~~ 143 (222)
++|+++.|+||||||||||++.| +++++++ | .|++++.+.... ...++.+++++.+|...+++.+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~ 249 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAY 249 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEE
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEE
Confidence 68999999999999999999954 5666653 3 677777654221 1123445678877754444433
No 153
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.58 E-value=8.3e-09 Score=103.28 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=66.9
Q ss_pred HHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCchHHHHHhcCCCCcc---hHHHHHHHHHHHHhcCCcc-c
Q 027509 96 ALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA---IREDISINLGPLEELSNLF-K 170 (222)
Q Consensus 96 TLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~~i~~g~~~~~~---~~~~~~~~~~~L~~l~l~~-~ 170 (222)
|+..|....++|. +.|.++|.+|.......+...+.|+.+- .+....... ..+......+.|..+++.. .
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~ 457 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNL-----NLTEREREIVGELLKEIEKRLEFLVDVGLEYLT 457 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSC-----CCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCB
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhc-----cCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccc
Confidence 3445556678888 9999999887321111111122221110 011111111 1122344566788899875 4
Q ss_pred ccCcCCC-ChHHHHHHHHHHHHc-CCC--eEEEe-cCCCCCCCc
Q 027509 171 ADLLLCE-SGGDNLAANFSRELA-DYI--IYIID-VSGGDKIPR 209 (222)
Q Consensus 171 ~d~~~~e-SgGqkQrv~iArAL~-~p~--IlILD-~t~G~d~p~ 209 (222)
+++.+.+ ||||+|||+|||||+ +|+ ||||| ||+|+|...
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~ 501 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRD 501 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGG
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHH
Confidence 6888999 999999999999999 777 99999 666776543
No 154
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.57 E-value=1.5e-08 Score=81.69 Aligned_cols=48 Identities=23% Similarity=0.168 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCch
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~ 137 (222)
|++++|+||||||||||+++|++ +. |.+.+++.++.. ...+++++|..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~------~~~~~~~~~~~ 50 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH------MVVGGYRPPWE 50 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT------TCCTTCCCGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh------hhccccccCcc
Confidence 68999999999999999999997 44 889988865522 12356666643
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.56 E-value=4.5e-08 Score=81.12 Aligned_cols=59 Identities=17% Similarity=0.018 Sum_probs=38.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHH-HcCcCCCCcEEEeeccCCCCChHHHhhccEEecCch
Q 027509 79 ERAFTVGIGGPVGTGKTALMLAL-CKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L-~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~ 137 (222)
++|+++.|+||||||||||+..+ ....+..+.+.+...+.......+....+++.+|+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHH
Confidence 78999999999999999996555 445544556666554432211122234567766654
No 156
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.55 E-value=3.4e-08 Score=79.67 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCC-C-CcEEEee
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVT 115 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p-~-G~I~i~g 115 (222)
+|++++|+||||||||||+++|++++++ . +.|.+.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~tt 41 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 41 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccC
Confidence 5899999999999999999999998875 3 6665543
No 157
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.54 E-value=3.6e-08 Score=80.94 Aligned_cols=44 Identities=30% Similarity=0.377 Sum_probs=38.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE 122 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~ 122 (222)
.++++++|+|+||||||||+++|++++.+. |.|.+.+.+.....
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 679999999999999999999999999876 88988887765443
No 158
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.47 E-value=8.6e-08 Score=85.19 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=43.2
Q ss_pred ccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC
Q 027509 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (222)
Q Consensus 73 ~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~ 120 (222)
.+++|. .++++++|+|+|||||||++..|++.+.+. ++|.+.+.|+..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 467887 889999999999999999999999999887 899999988753
No 159
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.47 E-value=8.8e-09 Score=83.47 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|+||||||||+++|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999975
No 160
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.45 E-value=8.2e-08 Score=80.46 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=33.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di 118 (222)
++|++++|.|+||||||||+++|+++ .|.|.+.+.++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~ 54 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPV 54 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCH
Confidence 78999999999999999999999998 67898887764
No 161
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.45 E-value=6.7e-08 Score=77.26 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=29.7
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-Cc
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YS 110 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~ 110 (222)
.++|. .+| +++|+||||||||||+++|++++.++ +.
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 34455 456 99999999999999999999988775 54
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.44 E-value=1.8e-08 Score=85.04 Aligned_cols=63 Identities=25% Similarity=0.151 Sum_probs=43.5
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCc
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~ 136 (222)
.+.++++. ++| +.|+||||||||||+++|++.+. .+.|.+++.++......+..+.++++||.
T Consensus 40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (254)
T 1ixz_A 40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFET 103 (254)
T ss_dssp HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567777 667 99999999999999999999874 57888887665322122222344445543
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.44 E-value=8.5e-08 Score=79.96 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+|++++|+||||||||||+++|++.++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 699999999999999999999999875
No 164
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.43 E-value=9.1e-08 Score=95.08 Aligned_cols=118 Identities=17% Similarity=0.097 Sum_probs=69.6
Q ss_pred CCChHHHHHHHHHcCcCC---------C-CcEEEeeccCCC---CChHHHhhccEEecCchHHH----HHhcCCCCcc--
Q 027509 90 VGTGKTALMLALCKFLRD---------K-YSLAAVTNDIFT---KEDGEFLMRNGALPEERIRA----VETGGCPHAA-- 150 (222)
Q Consensus 90 NGSGKSTLLk~L~Gll~p---------~-G~I~i~g~di~~---~~~~e~~~~ig~v~Q~~~~~----i~~g~~~~~~-- 150 (222)
+-.||++|.+.+.....| . |.|.++|.+|.. +...+....+.-+||.+... ..+.. ....
T Consensus 271 ~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~ 349 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIAL 349 (842)
T ss_dssp CHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHHH
T ss_pred CHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHHH
Confidence 346899999988875544 3 567888877643 22222222222222211000 00000 0000
Q ss_pred --hHHHHHHHHHHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-CC--CeEEEe-cCCCCCCC
Q 027509 151 --IREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIP 208 (222)
Q Consensus 151 --~~~~~~~~~~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~p--~IlILD-~t~G~d~p 208 (222)
+.+.+....+.|..+++... +++.+.+ ||||+|||+||++|+ +| .||||| ||+++|..
T Consensus 350 ~~i~~ei~~rl~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~ 415 (842)
T 2vf7_A 350 QRMAADLVKRLDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPA 415 (842)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGG
T ss_pred HHHHHHHHHHHHHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHH
Confidence 11222233346888998754 7898999 999999999999999 88 599999 66677643
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.42 E-value=3.3e-08 Score=94.43 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=49.9
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC--CcEEEeeccCCCCChHHHhhccEEecCchH
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~--G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~ 138 (222)
.++..+++. ..|+.+.|+||||+|||||+++|++++.+. +.+.+.+...... ...+.++|+...
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~ 114 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQG 114 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchH
Confidence 355667777 889999999999999999999999999876 6777777665322 235788877653
No 166
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.41 E-value=1.3e-07 Score=75.15 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=39.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhh-ccEEecCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEE 136 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~-~ig~v~Q~ 136 (222)
.+|++++|+|+||||||||+++|++.+ |.+.+++.++.. ...+.+ .+++.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 468999999999999999999999876 778888876642 222222 35666665
No 167
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.41 E-value=1.5e-07 Score=77.63 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC--CcEEEe
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAV 114 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~--G~I~i~ 114 (222)
++|++++|+||||||||||+++|++.+++. +.+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~ 43 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMT 43 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecc
Confidence 579999999999999999999999999873 444433
No 168
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.38 E-value=1.7e-07 Score=86.50 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=41.4
Q ss_pred ccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC
Q 027509 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (222)
Q Consensus 73 ~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~ 120 (222)
..++|+ ++++++|+|+|||||||++..|++.+.+. ++|.+.+.|+..
T Consensus 91 ~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred ccccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 346666 89999999999999999999999999988 899999988753
No 169
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.36 E-value=2.7e-08 Score=82.00 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc---CCC-CcEEE--------eeccCCC-CChHHHhhccEEecCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL---RDK-YSLAA--------VTNDIFT-KEDGEFLMRNGALPEE 136 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll---~p~-G~I~i--------~g~di~~-~~~~e~~~~ig~v~Q~ 136 (222)
+.+++|+||+||||||++++|++.+ .++ |.|.. .|.++.. ....++++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 5689999999999999999999876 455 77766 4554421 1123455678888775
No 170
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=1.7e-07 Score=76.53 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=24.8
Q ss_pred CCcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 70 ~~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+.+++++|+ .++.+++|+|++||||||+.+.|+..+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356789999 899999999999999999999999866
No 171
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.31 E-value=3.7e-07 Score=81.40 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcC--CC-CcEEEeeccCCCCCh
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKED 123 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~--p~-G~I~i~g~di~~~~~ 123 (222)
-.++||+||||||||||+++|++++. ++ |.|.+...|.+....
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~ 137 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSN 137 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccch
Confidence 34999999999999999999999987 45 788877776654433
No 172
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.30 E-value=1.1e-06 Score=80.95 Aligned_cols=128 Identities=18% Similarity=0.081 Sum_probs=74.9
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCC-CC-cEEEeeccCCCCChHHHhhcc-EEecCchHHHHHhcCC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIFTKEDGEFLMRN-GALPEERIRAVETGGC 146 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p-~G-~I~i~g~di~~~~~~e~~~~i-g~v~Q~~~~~i~~g~~ 146 (222)
.++.+..- .+|+++.|.|++|+|||||+..|+....+ .| .|.+...+.. ..++..++ +....-....+..+..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s---~~~l~~r~~~~~~~~~~~~l~~g~l 268 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS---AQQLVMRMLCAEGNINAQNLRTGKL 268 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC---HHHHHHHHHHHHHTCCHHHHHTSCC
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHHHHcCCCHHHHhcCCC
Confidence 34445444 88999999999999999999999997766 45 7888876653 33333322 1111111122233321
Q ss_pred CCcchHHHHHHHHHHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc---CCCeEEEecCCCCCCC
Q 027509 147 PHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA---DYIIYIIDVSGGDKIP 208 (222)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~---~p~IlILD~t~G~d~p 208 (222)
. .++...+.+++..+.... ..+. ... |.++.+ +.+|+++ +|+++|+|...-...+
T Consensus 269 ---~-~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 269 ---T-PEDWGKLTMAMGSLSNAGIYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp ---C-HHHHHHHHHHHHHHHSSCEEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred ---C-HHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 1 223334444555543222 1222 223 777665 5566664 7999999977766544
No 173
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.25 E-value=3.7e-07 Score=81.69 Aligned_cols=42 Identities=31% Similarity=0.547 Sum_probs=36.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~ 120 (222)
.++.+++|+|++||||||||+.|++.+.++ ++|.+.+.++..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 348899999999999999999999998887 899999988754
No 174
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.24 E-value=6.1e-07 Score=71.32 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=32.1
Q ss_pred ccCcCCC-ChHHHHHHHHH------HHHc-CCCeEEEe-cCCCCCCCc
Q 027509 171 ADLLLCE-SGGDNLAANFS------RELA-DYIIYIID-VSGGDKIPR 209 (222)
Q Consensus 171 ~d~~~~e-SgGqkQrv~iA------rAL~-~p~IlILD-~t~G~d~p~ 209 (222)
.++.+.+ |||||||++|| |||+ +|+++||| |++|+|...
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~ 98 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER 98 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHH
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHH
Confidence 4566777 99999999876 8999 99999999 677777543
No 175
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.24 E-value=2e-07 Score=74.53 Aligned_cols=40 Identities=30% Similarity=0.348 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCC--cEEEeeccC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDI 118 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G--~I~i~g~di 118 (222)
.+|++++|+|++||||||++++|++.+++.| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4689999999999999999999999887665 555665444
No 176
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.21 E-value=5.2e-07 Score=71.15 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
.+.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3678999999999999999999998753
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.21 E-value=2.8e-07 Score=87.63 Aligned_cols=87 Identities=20% Similarity=0.144 Sum_probs=53.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C-cEE-EeeccCCC-------CChH---HHhhccEEecCchHH--HHHh
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLA-AVTNDIFT-------KEDG---EFLMRNGALPEERIR--AVET 143 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G-~I~-i~g~di~~-------~~~~---e~~~~ig~v~Q~~~~--~i~~ 143 (222)
.+|++++|+|+||||||||+++|++++.++ | .|. +++.++.. .... +..+++++++|+... ++.+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi 446 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAI 446 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 689999999999999999999999999987 5 685 66654311 1111 123456777765321 1111
Q ss_pred cCCCCcchHHHHHHHHHHHHhcC
Q 027509 144 GGCPHAAIREDISINLGPLEELS 166 (222)
Q Consensus 144 g~~~~~~~~~~~~~~~~~L~~l~ 166 (222)
... ..........+.++++.++
T Consensus 447 ~~~-~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 447 CAP-IAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp ECC-CCCCHHHHHHHHHHHHTTS
T ss_pred Eec-CCccHHHHHHHHHHHHHcC
Confidence 111 0111334456667777766
No 178
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.18 E-value=1e-06 Score=80.47 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHc------------CcCCC-CcEEEee
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCK------------FLRDK-YSLAAVT 115 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~G------------ll~p~-G~I~i~g 115 (222)
.+|..++|+|+||||||||+++|+| .+.|+ |.|.+.+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 6799999999999999999999999 55677 8888765
No 179
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.16 E-value=4.6e-07 Score=80.63 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=42.3
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~ 120 (222)
++.++++. .++.+++|+|+||||||||++.|++.+.+. ++|.+.+.++..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 34456776 889999999999999999999999999887 889988887743
No 180
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.15 E-value=2.2e-07 Score=85.99 Aligned_cols=43 Identities=26% Similarity=0.493 Sum_probs=37.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC
Q 027509 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (222)
Q Consensus 78 ~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~ 120 (222)
..++.+++|+|+|||||||++..|+..+.+. ++|.+.+.|+..
T Consensus 94 ~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 94 TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 3468999999999999999999999999887 799998888743
No 181
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.08 E-value=8.8e-07 Score=83.74 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=36.7
Q ss_pred ccCCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeec
Q 027509 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN 116 (222)
Q Consensus 73 ~~~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~ 116 (222)
..+++.-+|++++|+||||+|||||+++|++.+.+. +.|.+.+.
T Consensus 100 ~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 100 QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 445555679999999999999999999999999877 88776663
No 182
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.05 E-value=5.4e-06 Score=83.33 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=40.6
Q ss_pred HHHHhcCCcc-cccCcCCC-ChHHHHHHHHHHHHc-C--CCeEEEe-cCCCCCC
Q 027509 160 GPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D--YIIYIID-VSGGDKI 207 (222)
Q Consensus 160 ~~L~~l~l~~-~~d~~~~e-SgGqkQrv~iArAL~-~--p~IlILD-~t~G~d~ 207 (222)
+.|..+++.. .+++.+.+ ||||+||++||++|+ + |.||||| ||.|+|.
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp 539 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 539 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCG
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCH
Confidence 4688889875 47899999 999999999999999 7 4899999 6666664
No 183
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.04 E-value=3.2e-06 Score=75.85 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
++|+++.|.||||||||||+..++...... +.+.+...+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 689999999999999999988888755444 666655543
No 184
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.03 E-value=5.5e-06 Score=83.46 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=40.0
Q ss_pred HHHHhcCCccc-ccCcCCC-ChHHHHHHHHHHHHc-C--CCeEEEe-cCCCCCC
Q 027509 160 GPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-D--YIIYIID-VSGGDKI 207 (222)
Q Consensus 160 ~~L~~l~l~~~-~d~~~~e-SgGqkQrv~iArAL~-~--p~IlILD-~t~G~d~ 207 (222)
+.|..+++... +++.+.+ ||||+||++||++|+ + |.||||| ||.|+|.
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp 556 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQ 556 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCH
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCH
Confidence 45788888754 7888999 999999999999999 7 5899999 5566653
No 185
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.02 E-value=5.2e-06 Score=74.86 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=27.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcC-----------CC-CcEEEeecc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLR-----------DK-YSLAAVTND 117 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~-----------p~-G~I~i~g~d 117 (222)
+++|+|++||||||||++|++... +. +.|.+++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 499999999999999999999765 34 666666644
No 186
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.02 E-value=2.3e-06 Score=78.06 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
..+++++|+|||||||||||++|++++.++
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 458999999999999999999999987763
No 187
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.00 E-value=3.2e-06 Score=68.90 Aligned_cols=28 Identities=39% Similarity=0.623 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+++.+++|+|++|||||||+++|++.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999999999874
No 188
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.99 E-value=5e-07 Score=77.62 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCCcccCCCC-CC---CcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 69 APPILSRNFN-ER---AFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 69 ~~~~~~~~~~-~~---GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
..++.+++|+ .+ |++++|+|++||||||+.++|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4577889999 77 99999999999999999999998653
No 189
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.94 E-value=7.3e-07 Score=84.13 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=35.4
Q ss_pred CCC-CCCcEEEEEcCCCChHHHHHHHHHc--CcCCC-CcEEEeeccCC
Q 027509 76 NFN-ERAFTVGIGGPVGTGKTALMLALCK--FLRDK-YSLAAVTNDIF 119 (222)
Q Consensus 76 ~~~-~~GeivgIiGpNGSGKSTLLk~L~G--ll~p~-G~I~i~g~di~ 119 (222)
.++ .++..+.|.|++||||||+|++|.. +++.+ +.+.+...|..
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 344 5688999999999999999999886 45566 88888877764
No 190
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.94 E-value=4e-06 Score=78.78 Aligned_cols=63 Identities=25% Similarity=0.151 Sum_probs=44.0
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCc
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~ 136 (222)
.+.++++. ++| +.|+||||+|||||+++|++.+. .+.|.+++.++.........+++..+||.
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq~ 118 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFET 118 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTTT
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHHH
Confidence 34556677 667 99999999999999999999764 47788888776443222223334445554
No 191
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.90 E-value=3.5e-05 Score=68.51 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=27.6
Q ss_pred CcccCCCCCCCcEEEEEcCCCChHHHHHHHHHc--CcCCC-CcE
Q 027509 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCK--FLRDK-YSL 111 (222)
Q Consensus 71 ~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~G--ll~p~-G~I 111 (222)
.+.+++++-+ .++|+|++||||||||+.|+| +++.. |.+
T Consensus 26 ~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 26 ALPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp CC----CCCC--EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred ccccccccCC--EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 5556667733 899999999999999999999 44444 544
No 192
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.90 E-value=2.6e-06 Score=77.42 Aligned_cols=127 Identities=12% Similarity=0.007 Sum_probs=70.6
Q ss_pred CcccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCchHH---HHHhcCC
Q 027509 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIR---AVETGGC 146 (222)
Q Consensus 71 ~~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~~~~---~i~~g~~ 146 (222)
++.++++. ++|++++|+||||||||||+++|++.+ .|.+.... +.. . .....++++||.... .+.....
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~~--~~~-~--~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKALNVN--LPL-D--RLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEECCS--SCT-T--THHHHHGGGTTCSCEEETTCCCSTT
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEEEe--ccc-h--hHHHHHHHhcchhHHHHHHHHHHHH
Confidence 44566778 899999999999999999999999964 36655421 111 1 112246777776531 1111000
Q ss_pred -C-Cc---chHHHHHHHHHHHHh---cC------------C-cccccCcCCC-ChHHHHHHHHHHHHc-CCCeEE-EecC
Q 027509 147 -P-HA---AIREDISINLGPLEE---LS------------N-LFKADLLLCE-SGGDNLAANFSRELA-DYIIYI-IDVS 202 (222)
Q Consensus 147 -~-~~---~~~~~~~~~~~~L~~---l~------------l-~~~~d~~~~e-SgGqkQrv~iArAL~-~p~IlI-LD~t 202 (222)
. .. ........+...+.- +. + ....+..... ++|+++|+..+++++ .|++++ ||++
T Consensus 231 ~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~ 310 (377)
T 1svm_A 231 ESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERS 310 (377)
T ss_dssp TTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTC
T ss_pred HHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCC
Confidence 0 00 000011122233320 00 0 1123444445 899999988877777 777766 7855
Q ss_pred CC
Q 027509 203 GG 204 (222)
Q Consensus 203 ~G 204 (222)
..
T Consensus 311 ~~ 312 (377)
T 1svm_A 311 EF 312 (377)
T ss_dssp TH
T ss_pred HH
Confidence 43
No 193
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.87 E-value=6.6e-06 Score=66.86 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCCCcEEEee
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g 115 (222)
+++|+|+|||||||+.++|+++ |...++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC----CCcccch
Confidence 7999999999999999999983 4444444
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.87 E-value=4.3e-06 Score=80.91 Aligned_cols=58 Identities=21% Similarity=0.082 Sum_probs=45.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC--C-CcEEEeeccCCCCChHHHhhccEEecCch
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p--~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~~ 137 (222)
+++..++|+|++|||||||++.|++...+ . |+| .++..+......++.+.+.+.+|..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~ 67 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVA 67 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecce
Confidence 67899999999999999999999976554 3 887 5666666666667677777776643
No 195
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.86 E-value=8.6e-06 Score=66.25 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=29.0
Q ss_pred cCcCCC-ChHHHHHHHHHHHHc-C----CCeEEEe-cCCCCCC
Q 027509 172 DLLLCE-SGGDNLAANFSRELA-D----YIIYIID-VSGGDKI 207 (222)
Q Consensus 172 d~~~~e-SgGqkQrv~iArAL~-~----p~IlILD-~t~G~d~ 207 (222)
.+.+.. |||||||++|||+|+ . |+++||| |+.++|.
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~ 101 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDD 101 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCH
Confidence 344555 999999999999997 4 6999999 6667764
No 196
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.84 E-value=5.1e-06 Score=74.97 Aligned_cols=56 Identities=21% Similarity=0.105 Sum_probs=40.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCCCChHHHhhccEEecCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~~~~~e~~~~ig~v~Q~ 136 (222)
++|+++.|+||||||||||+..++..+.+. |.+.+...+-.. ...+.+++++.+|+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DPVYAKNLGVDLKS 115 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHHHHHHHTCCGGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--chHHHHHcCCchhh
Confidence 689999999999999999999999988776 766554433221 22345567776654
No 197
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.83 E-value=7.8e-06 Score=65.49 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEE
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i 113 (222)
.+|.++.|+|++||||||+++.|+..+.+. +.+.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 46 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 679999999999999999999999988776 56543
No 198
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.82 E-value=3.8e-06 Score=69.00 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C--cEEEeecc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTND 117 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G--~I~i~g~d 117 (222)
.+|.+++|+|++||||||+++.|.+.+.+. | .+.+++..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 679999999999999999999999998865 7 66666543
No 199
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.81 E-value=1e-05 Score=63.79 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
..+.+|+|||||||||||.+|+-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 359999999999999999999853
No 200
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.80 E-value=3.4e-06 Score=78.93 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHc-CC--CeEEEe-cCCCCCCCcc
Q 027509 178 SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIPRK 210 (222)
Q Consensus 178 SgGqkQrv~iArAL~-~p--~IlILD-~t~G~d~p~K 210 (222)
||||+|||+|||+|+ +| ++|||| |+.|+|...+
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~ 435 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAA 435 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHH
Confidence 999999999999999 99 999999 7778886543
No 201
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.78 E-value=1.1e-05 Score=65.43 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 027509 83 TVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~G 103 (222)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 202
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.78 E-value=8.6e-06 Score=71.47 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=40.2
Q ss_pred CCCCCCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC
Q 027509 75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (222)
Q Consensus 75 ~~~~~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~ 120 (222)
++|+.++++++|+|+||+||||++..|++.+.+. ++|.+.+.|+..
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5666449999999999999999999999999887 799999988753
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.73 E-value=1.2e-05 Score=65.54 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.+|.+++|+||+|||||||++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4688999999999999999999998764
No 204
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.72 E-value=6.3e-05 Score=67.36 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di 118 (222)
.+|+++.|.|++|+|||||+..|+...... +.|.+...+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 789999999999999999999888765444 5677766554
No 205
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.69 E-value=2.5e-05 Score=65.64 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
.+|.+++|.|++||||||+++.|+..+.+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 47999999999999999999999998876
No 206
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.68 E-value=1.9e-05 Score=64.05 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di 118 (222)
...+++|+|++|||||||.+.|+..+ |.+.+++.++
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d~~ 52 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGDAL 52 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCCcC
Confidence 35689999999999999999999876 4455555444
No 207
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.67 E-value=1.1e-05 Score=73.80 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcC------------CC-CcEEEeeccC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLR------------DK-YSLAAVTNDI 118 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~------------p~-G~I~i~g~di 118 (222)
.-.++|+|+||||||||++.|+|... +. |.+.++|.++
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 34799999999999999999999853 33 6777777643
No 208
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.61 E-value=2.8e-05 Score=61.39 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++..++|+|++|+|||||++.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999864
No 209
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.61 E-value=1.6e-05 Score=70.91 Aligned_cols=27 Identities=33% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
...-.++|+|++|+|||||++.|++..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999999865
No 210
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.59 E-value=0.00011 Score=68.65 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=24.1
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+.+. ++| +.|+||+|+|||||+++|++..
T Consensus 43 ~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 43 RIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp TTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 34455 445 8899999999999999999844
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.56 E-value=1.7e-05 Score=78.24 Aligned_cols=60 Identities=23% Similarity=0.154 Sum_probs=41.0
Q ss_pred CCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccCCCCChHHHhhccEEecCc
Q 027509 76 NFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (222)
Q Consensus 76 ~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di~~~~~~e~~~~ig~v~Q~ 136 (222)
+|. .+++.+.|+||||||||||+++|++.+... .+.+++.++......+....+..+||.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-~i~v~~~~l~~~~~g~~~~~l~~vf~~ 292 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-FFLINGPEIMSKLAGESESNLRKAFEE 292 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-EEEEEHHHHSSSSTTHHHHHHHHHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-EEEEEchHhhhhhhhhHHHHHHHHHHH
Confidence 345 778999999999999999999999987543 366777665443333333334444444
No 212
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.56 E-value=3.6e-05 Score=63.41 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~G 103 (222)
..+.+|+|||||||||||.+|+-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35999999999999999999864
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.54 E-value=2.6e-05 Score=72.34 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=35.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~~ 120 (222)
.+..++.|+|++||||||++..|+..+... .+|.+...|...
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 457899999999999999999999988877 578887777643
No 214
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.54 E-value=4.2e-05 Score=59.64 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
..++|+|++|+|||||++.|++...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3689999999999999999999643
No 215
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.54 E-value=3.7e-05 Score=61.05 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
+|.+++|+|++||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999853
No 216
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.54 E-value=4.2e-05 Score=71.50 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.2
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.+++. .+| +.+|+|+|||||||||.+|+.+
T Consensus 53 ~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 45556 556 9999999999999999999665
No 217
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.53 E-value=5.3e-05 Score=60.80 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=24.8
Q ss_pred CCCC-CCCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 75 ~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.++. .++.+++|+|++||||||+.++|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4566 67899999999999999999999876
No 218
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.52 E-value=4e-05 Score=62.19 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
-.+++|+|++|||||||++.|++.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 4689999999999999999999987654
No 219
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.48 E-value=4.1e-05 Score=66.83 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+..+++|+|++|||||||++.|+|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 345689999999999999999999963
No 220
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.46 E-value=6.6e-05 Score=62.62 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++.+++|+|++||||||+.++|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999999743
No 221
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.46 E-value=0.00016 Score=63.39 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=33.2
Q ss_pred cccCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeecc
Q 027509 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (222)
Q Consensus 72 ~~~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~d 117 (222)
++.+.-- .+|+++.|.|++|+|||||+..++.-.... ..+.+...+
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 4344333 789999999999999999998887644333 456666544
No 222
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.44 E-value=6.6e-05 Score=58.40 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999987653
No 223
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.44 E-value=7e-05 Score=58.94 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-.++|+|++|+|||||++.|++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999984
No 224
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.41 E-value=7.1e-05 Score=59.37 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 225
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.38 E-value=8.9e-05 Score=67.82 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
..+..++|+|+||+|||||+++|++.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 56788999999999999999999997
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.38 E-value=8.4e-05 Score=59.45 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=20.9
Q ss_pred CcccCCCCCCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 71 ~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
++..+++..+.-.++|+|++|+|||||++.+++
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 445677775556889999999999999999998
No 227
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.36 E-value=0.00011 Score=57.74 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998664
No 228
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.36 E-value=9.4e-05 Score=57.11 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 027509 83 TVGIGGPVGTGKTALMLAL 101 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L 101 (222)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 229
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.35 E-value=0.00011 Score=61.09 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
+--.++|+|++|+|||||++.|+|....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 3456999999999999999999996554
No 230
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.32 E-value=0.00012 Score=57.78 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988654
No 231
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.32 E-value=9.1e-05 Score=62.65 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di 118 (222)
.++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHH
Confidence 5688999999999999999999998764 23455565443
No 232
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.31 E-value=0.00014 Score=64.72 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~ 119 (222)
.+..+++|+|+.|+|||||++.|+..+... -+|.+...|+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPS 118 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 456689999999999999999999887665 47777776653
No 233
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.29 E-value=0.00014 Score=59.53 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~G 103 (222)
+-+++|+|++||||||++++|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 234
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.28 E-value=0.00014 Score=57.71 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56799999999999999999998754
No 235
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.27 E-value=0.00012 Score=59.39 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=27.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCCC-cEEEee
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVT 115 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~G-~I~i~g 115 (222)
.+++|+|++|||||||+..|+..++..| +|.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 5799999999999999999999887653 555443
No 236
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.26 E-value=3.6e-05 Score=62.34 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
+++|.|++|||||||++.|+..+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 78999999999999999999887654
No 237
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.26 E-value=0.00014 Score=65.23 Aligned_cols=36 Identities=14% Similarity=-0.045 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEee
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g 115 (222)
.+.-+.|+|++|||||||++.|+..+.+. +.|.+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 57779999999999999999999977776 6777754
No 238
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.25 E-value=0.00016 Score=57.94 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeec
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN 116 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~ 116 (222)
.+..+++|+|++||||||+.+.|+.. |...++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~~~id~d 39 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----GYPVLDLD 39 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEEEHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----CCEEEccc
Confidence 45678999999999999999999986 54555443
No 239
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.25 E-value=0.00022 Score=70.18 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=25.3
Q ss_pred CCC-ChHHHHHHHHHHHHc-CCCeEEEecCC
Q 027509 175 LCE-SGGDNLAANFSRELA-DYIIYIIDVSG 203 (222)
Q Consensus 175 ~~e-SgGqkQrv~iArAL~-~p~IlILD~t~ 203 (222)
+.. |.|+.+|..++++++ ++.++|+||+-
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAH 218 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGG
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCcc
Confidence 444 899999999999888 99999999885
No 240
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.24 E-value=0.0002 Score=57.47 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+|-+++|+|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999877
No 241
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.24 E-value=0.00016 Score=57.77 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999844
No 242
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.23 E-value=0.00017 Score=56.51 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHc
Q 027509 82 FTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~G 103 (222)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 243
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.23 E-value=7.1e-05 Score=60.40 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=27.2
Q ss_pred CcccCCCCCCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 71 ~~~~~~~~~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
++..+++..+.-.++|+|++|+|||||++.+++
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 556677774444689999999999999999987
No 244
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=7.8e-05 Score=65.40 Aligned_cols=45 Identities=29% Similarity=0.325 Sum_probs=33.3
Q ss_pred CcccCCCC-CCCcE--EEEEcCCCChHHHHHHHHHcCcCCC-CcEEEee
Q 027509 71 PILSRNFN-ERAFT--VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (222)
Q Consensus 71 ~~~~~~~~-~~Gei--vgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g 115 (222)
++..+... ..|++ +.|.||+|+|||||++++++.+.+. +.+.+.+
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 33444444 66777 9999999999999999999987665 5444433
No 245
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.20 E-value=0.00017 Score=61.32 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+++|+||+|||||||.+.|+..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
No 246
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.19 E-value=0.00016 Score=57.11 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998755
No 247
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.16 E-value=0.00024 Score=56.50 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998644
No 248
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.16 E-value=0.00023 Score=57.19 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCCCcE
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSL 111 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I 111 (222)
++.+++|.|+.||||||+.+.|+..+...|.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 34 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV 34 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence 46789999999999999999999876554534
No 249
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.15 E-value=0.00017 Score=66.30 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=30.2
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
++.+. .+|+.++|+||+|+|||||++.|++.+.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 67777 8999999999999999999999999764
No 250
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.14 E-value=0.00023 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++.++.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998543
No 251
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.14 E-value=0.00025 Score=57.24 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999987554
No 252
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.14 E-value=0.00024 Score=56.19 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987643
No 253
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.13 E-value=0.00027 Score=57.07 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999997553
No 254
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.12 E-value=0.00027 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998654
No 255
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.11 E-value=0.00022 Score=63.80 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=28.2
Q ss_pred cCCC-ChHHHHHH------HHHHHHc-C-CCeEEEe-cCCCCCCCc
Q 027509 174 LLCE-SGGDNLAA------NFSRELA-D-YIIYIID-VSGGDKIPR 209 (222)
Q Consensus 174 ~~~e-SgGqkQrv------~iArAL~-~-p~IlILD-~t~G~d~p~ 209 (222)
.+.. |+||+||+ ++|++|+ + |+++||| |++|+|..+
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~ 322 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR 322 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence 3456 99999988 5678888 8 9999999 666777443
No 256
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.09 E-value=8.8e-05 Score=67.06 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=27.0
Q ss_pred cCCCC-CCCcE--EEEEcCCCChHHHHHHHHHcCcC
Q 027509 74 SRNFN-ERAFT--VGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 74 ~~~~~-~~Gei--vgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.+++. ++|++ ++|+|++|||||||.++|++.+.
T Consensus 14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34444 66777 99999999999999999998653
No 257
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.08 E-value=0.00025 Score=60.33 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999754
No 258
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.08 E-value=0.00027 Score=55.77 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
++.|.|++||||||+.+.|+..+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999986653
No 259
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.08 E-value=0.00026 Score=58.08 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.+.|+||+|||||||++.|+...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999986543
No 260
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.07 E-value=0.00049 Score=53.26 Aligned_cols=28 Identities=39% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 77 FNERAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 77 ~~~~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
+.++...++|+|+.|+|||||++.+++-
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456778999999999999999999873
No 261
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.06 E-value=0.00022 Score=57.31 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+++|.|++||||||+.++|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998855
No 262
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.05 E-value=0.00022 Score=60.60 Aligned_cols=26 Identities=35% Similarity=0.675 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+.-+++|+||+||||||+.++|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999543
No 263
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.02 E-value=0.00034 Score=55.63 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=23.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCCC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDKY 109 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~G 109 (222)
+++|.|+.||||||+.+.|...+...|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 689999999999999999998764433
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.01 E-value=0.0003 Score=60.95 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEee
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g 115 (222)
.++.++.|+||+|||||||.+.|+..+. .+.+.++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEec
Confidence 4688999999999999999999987542 23455543
No 265
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.00 E-value=0.0004 Score=62.06 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=20.1
Q ss_pred cEEEEEcCCCChHHHHHHHHH
Q 027509 82 FTVGIGGPVGTGKTALMLALC 102 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~ 102 (222)
.+++|+|||||||||||.+|+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999987
No 266
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.98 E-value=0.00032 Score=58.74 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=27.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di 118 (222)
-+.|.||+|+|||||+++|++.+... -+.+++.++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~-~~~i~~~~~ 81 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP-FFTISGSDF 81 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC-EEEECSCSS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC-EEEEeHHHH
Confidence 38899999999999999999976422 355565554
No 267
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.98 E-value=0.00042 Score=59.18 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEE
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i 113 (222)
...+.|.||+|+|||||+++|+..+... +.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~ 80 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR 80 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEE
Confidence 4689999999999999999999988776 54443
No 268
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.98 E-value=0.00029 Score=55.54 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=18.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998644
No 269
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.97 E-value=0.00043 Score=55.13 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+.+++|+|+.||||||+.+.|+..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998755
No 270
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.95 E-value=0.00055 Score=62.24 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=28.0
Q ss_pred CCC-ChHHHHHHHHHHHHc-----CCCeEEEe-cCCCCCCC
Q 027509 175 LCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIP 208 (222)
Q Consensus 175 ~~e-SgGqkQrv~iArAL~-----~p~IlILD-~t~G~d~p 208 (222)
+.. |+||||+++||++|+ +|+++||| |+.++|..
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~ 371 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDIT 371 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHH
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHH
Confidence 445 999999999999998 48999999 66666643
No 271
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.94 E-value=0.00032 Score=56.59 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=24.5
Q ss_pred cCCCC-CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 74 ~~~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++.|. ..---++|+|+.|+|||||++.+++-.
T Consensus 17 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 17 NLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp --CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 34444 445579999999999999999999843
No 272
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00041 Score=54.79 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+.-.++|+|+.|||||||++.|++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999864
No 273
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.92 E-value=0.00057 Score=55.00 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+..+++|+|+.||||||+.+.|+..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
No 274
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.92 E-value=0.00047 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988664
No 275
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.92 E-value=0.00055 Score=56.06 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998754
No 276
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.91 E-value=0.00048 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.+++-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999999854
No 277
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.91 E-value=0.00065 Score=61.38 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~G 103 (222)
+..++|+|.+|+|||||+++|++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45699999999999999999998
No 278
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.90 E-value=0.00061 Score=54.91 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
No 279
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.90 E-value=0.0005 Score=55.88 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997644
No 280
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.89 E-value=0.00049 Score=54.23 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
..+++|+|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998644
No 281
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.89 E-value=0.00056 Score=53.47 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998754
No 282
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.88 E-value=0.00049 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-++|+|+.|+|||||++.+++-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 283
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.00054 Score=52.36 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-++|+|+.|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999983
No 284
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.87 E-value=0.00049 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 285
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.87 E-value=0.00057 Score=56.32 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++.+++|+|+.||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998644
No 286
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.87 E-value=0.00044 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
-++|+|+.|+|||||++.+++...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 489999999999999999988543
No 287
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.86 E-value=0.00059 Score=54.84 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEE
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i 113 (222)
..+.|.||+|+|||||+++|+..+... ..+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~ 87 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 789999999999999999999977655 44443
No 288
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.86 E-value=0.00052 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-++|+|+.|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 289
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.86 E-value=0.00053 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|+.|+|||||++.+++-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 290
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.85 E-value=0.00048 Score=58.16 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
.+|.++.|.|+.||||||+++.|+..+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36999999999999999999999987753
No 291
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.85 E-value=0.00051 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|+.|+|||||++.+++-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 292
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.84 E-value=0.00045 Score=61.84 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.++|+|++|+|||||++.|++...
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999987643
No 293
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.84 E-value=0.00054 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-++|+|+.|+|||||++.+++-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 294
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.84 E-value=0.00054 Score=59.93 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.1
Q ss_pred CCCc--EEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 79 ERAF--TVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 79 ~~Ge--ivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
..+. .+.|.||+|+|||||++.+++.+.+.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 3456 89999999999999999999988764
No 295
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.84 E-value=0.0006 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37999999999999999998643
No 296
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.83 E-value=0.00064 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 297
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.83 E-value=0.00061 Score=55.45 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997644
No 298
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.83 E-value=0.00057 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.+++-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 299
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.82 E-value=0.00049 Score=54.38 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.+.-.++|+|++|+|||||++.+++-
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999986
No 300
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.82 E-value=0.00054 Score=52.95 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.|++-.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 301
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.82 E-value=0.00061 Score=55.87 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
No 302
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.81 E-value=0.00064 Score=58.56 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-.++|+|++|||||||++.|+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999999964
No 303
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.81 E-value=0.0006 Score=51.99 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.+++-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 304
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.80 E-value=0.00061 Score=52.67 Aligned_cols=24 Identities=38% Similarity=0.355 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-.++|+|+.|||||||++.+++-.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999998754
No 305
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.80 E-value=0.00062 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-++|+|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
No 306
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.80 E-value=0.00058 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.+++-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 307
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.80 E-value=0.00062 Score=51.90 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-++|+|+.|+|||||++.+++-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 308
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.80 E-value=0.00061 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 309
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.79 E-value=0.00063 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.+++-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
No 310
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.79 E-value=0.00063 Score=58.85 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEee
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g 115 (222)
..+..+.|.||+|+|||||+++|++.+. ...+.+++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~~ 82 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKG 82 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEECH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEEh
Confidence 5678899999999999999999998653 23444444
No 311
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.00092 Score=54.16 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di 118 (222)
+-..++|+|+.|||||||++.|++.+....++.+...+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~ 67 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV 67 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC
Confidence 456899999999999999999998654334454444443
No 312
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.78 E-value=0.00059 Score=53.80 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+--.++|+|+.|+|||||++.|++-.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999999853
No 313
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.77 E-value=0.00086 Score=54.35 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
..+..+.|.||+|+|||||++.|+..+..
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999886553
No 314
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.77 E-value=0.00051 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
.+.-.++|+|++|+|||||++.+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999985
No 315
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.77 E-value=0.00061 Score=53.39 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--.++|+|+.|||||||++.|++-.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3469999999999999999999864
No 316
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.77 E-value=0.00067 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.--++|+|+.|+|||||++.|++-
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999986
No 317
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.76 E-value=0.00098 Score=53.20 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.5
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 77 FNERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 77 ~~~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
+..+.-.++|+|+.|+|||||++.+++
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 345667799999999999999999976
No 318
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.76 E-value=0.00072 Score=54.02 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++---++|+|+.|+|||||++.+++-.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 445679999999999999999998753
No 319
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.76 E-value=0.00063 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.+++-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999854
No 320
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.76 E-value=0.00066 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 321
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.75 E-value=0.00058 Score=57.14 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 77 FNERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 77 ~~~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
..-.|..+.|+||+|||||||...|+...
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 33568899999999999999999998743
No 322
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.00068 Score=58.89 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
..+..+.|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55889999999999999999999997754
No 323
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.74 E-value=0.00072 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-++|+|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999973
No 324
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.74 E-value=0.00081 Score=56.51 Aligned_cols=26 Identities=23% Similarity=0.623 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+-.+++|.|+.||||||+.+.|...+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998743
No 325
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.72 E-value=0.00075 Score=52.63 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999974
No 326
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.71 E-value=0.00088 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.+++-.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 358999999999999999999743
No 327
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.70 E-value=0.00082 Score=52.66 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
---++|+|+.|+|||||++.|.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 345899999999999999999986543
No 328
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.70 E-value=0.00079 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.-.++|+|+.|+|||||++.+++-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999863
No 329
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.70 E-value=0.00077 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.|++-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999984
No 330
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.70 E-value=0.0009 Score=56.72 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998654
No 331
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.70 E-value=0.0008 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.|++-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
No 332
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.67 E-value=0.00085 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.|++-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45999999999999999999874
No 333
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.66 E-value=0.00083 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 334
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.66 E-value=0.0012 Score=54.18 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
+.-.++|+|+.|+|||||++.|++-
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999885
No 335
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.66 E-value=0.0009 Score=51.03 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 027509 83 TVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~G 103 (222)
-++|+|+.|+|||||++.+++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999986
No 336
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.001 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.+.--++|+|+.|+|||||++.+++-
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34556999999999999999999874
No 337
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.66 E-value=0.0011 Score=55.09 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
.+|+.+.|.||+||||||++.+++-
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 4689999999999999998887653
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.66 E-value=0.0011 Score=55.73 Aligned_cols=27 Identities=26% Similarity=0.107 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++-+++|+||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998644
No 339
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.65 E-value=0.0009 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.+++-.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999999754
No 340
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.65 E-value=0.00099 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998654
No 341
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.00095 Score=51.70 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
---++|+|+.|+|||||++.+++-.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998743
No 342
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.62 E-value=0.00096 Score=56.19 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.-.++|+|.+|+|||||++.|+|.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 3458999999999999999999854
No 343
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.61 E-value=0.001 Score=57.93 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
+--+++|+|.+|||||||++.|+|.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999995
No 344
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.61 E-value=0.0011 Score=54.28 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-.+++|+|+.||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998753
No 345
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.60 E-value=0.001 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-.++|+|+.|+|||||++.|++-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999874
No 346
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.60 E-value=0.001 Score=51.52 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.+++-.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 347
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.60 E-value=0.0012 Score=56.20 Aligned_cols=28 Identities=32% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.++..+.|.||+|+|||||+++|++.+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999998653
No 348
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.60 E-value=0.00097 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.+++-.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998743
No 349
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.60 E-value=0.0014 Score=50.60 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.....+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999988653
No 350
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.58 E-value=0.001 Score=53.66 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--.++|+|+.|+|||||++.|++-.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999999854
No 351
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.57 E-value=0.0011 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.|++-.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999999843
No 352
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.56 E-value=0.00022 Score=70.34 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=31.7
Q ss_pred CCC-CCCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccC
Q 027509 76 NFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (222)
Q Consensus 76 ~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di 118 (222)
.+. .++..+.|.||||+|||||+++|++.+.. ..+.+++.++
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-~~i~v~~~~l 547 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISIKGPEL 547 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-CCCCCCCSSS
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-CEEEEechHh
Confidence 344 57888999999999999999999998753 3344455444
No 353
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.56 E-value=0.00062 Score=59.20 Aligned_cols=27 Identities=15% Similarity=0.397 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+.-+++|.|++||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987554
No 354
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.56 E-value=0.0012 Score=57.65 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
..++|+|.+|+|||||++.|+|.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999985
No 355
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.55 E-value=0.0011 Score=52.62 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--.++|+|+.|+|||||++.|++-.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998754
No 356
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.55 E-value=0.0011 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 357
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.54 E-value=0.0012 Score=56.91 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
.+..+++|+|+.||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999984
No 358
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.54 E-value=0.0012 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+.-.++|+|+.|+|||||++.+++-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456779999999999999999999743
No 359
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.54 E-value=0.0012 Score=52.14 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.+++-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 360
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.0011 Score=52.20 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.--++|+|+.|+|||||++.|++-
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346999999999999999999873
No 361
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.0011 Score=52.53 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.+++-.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 359999999999999999998743
No 362
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.53 E-value=0.0013 Score=53.74 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998744
No 363
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.53 E-value=0.0012 Score=52.43 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
---++|+|++|+|||||++.+++-
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999766653
No 364
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.53 E-value=0.0011 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 365
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.53 E-value=0.0012 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
---++|+|+.|+|||||++.+++-
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999974
No 366
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.52 E-value=0.0012 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-++|+|+.|+|||||++.+++-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 367
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.52 E-value=0.00091 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-.++|+|++|+|||||++.+++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999764
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.52 E-value=0.0013 Score=53.84 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++-++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998754
No 369
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.50 E-value=0.0013 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.211 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|.+|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999963
No 370
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.50 E-value=0.0016 Score=54.64 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+..++.|+||+||||+|..+.|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 371
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.50 E-value=0.00043 Score=55.46 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCCCCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 76 NFNERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 76 ~~~~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
.+..+.--++|+|+.|+|||||++.+++
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3345566799999999999999988876
No 372
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.49 E-value=0.0014 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 373
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.48 E-value=0.0011 Score=55.06 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY 109 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~G 109 (222)
.+|.++.|.|+.||||||+++.|+..+...|
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999998877654
No 374
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.48 E-value=0.0014 Score=54.83 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+--.++|+|+.|||||||++.|++-.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999853
No 375
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.48 E-value=0.0015 Score=55.88 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHc
Q 027509 82 FTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~G 103 (222)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 376
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.47 E-value=0.0013 Score=51.17 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 027509 83 TVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~G 103 (222)
.++|+|+.|+|||||++.+++
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 377
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.47 E-value=0.0018 Score=53.58 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 77 FNERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 77 ~~~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+..++.++.|+|+.||||||+.+.|+..+
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33567789999999999999999998755
No 378
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.47 E-value=0.0014 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.480 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999863
No 379
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.47 E-value=0.0019 Score=52.45 Aligned_cols=39 Identities=33% Similarity=0.602 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEeeccC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g~di 118 (222)
+-..++|+|..|+|||||++.++.-......+...+.+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~ 75 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV 75 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEET
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCC
Confidence 456899999999999999999998654333343333333
No 380
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.46 E-value=0.00077 Score=54.52 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
..-.++|+|+.|+|||||++.|++-.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999864
No 381
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0014 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-.++|+|+.|+|||||++.|++-.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 382
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.45 E-value=0.0013 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.052 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.--++|+|+.|+|||||++.+++-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4469999999999999999999854
No 383
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.45 E-value=0.002 Score=58.59 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=25.5
Q ss_pred CCC-CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 76 NFN-ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 76 ~~~-~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+. .+..++.|+|++||||||+.+.|+..+
T Consensus 252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 344 668999999999999999999998644
No 384
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.45 E-value=0.0014 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHc
Q 027509 82 FTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~G 103 (222)
-.++|+|++|+|||||++.+++
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999996
No 385
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.45 E-value=0.0014 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.+++-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999743
No 386
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0016 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 78 NERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 78 ~~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
..+.-.++|+|+.|+|||||++.+++
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 35567799999999999999999995
No 387
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.44 E-value=0.0013 Score=59.38 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.++|+|++|+|||||+++|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 388
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0014 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.+++-.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 459999999999999999999844
No 389
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.43 E-value=0.0014 Score=52.17 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-++|+|+.|+|||||++.|++-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999743
No 390
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.43 E-value=0.0012 Score=57.17 Aligned_cols=29 Identities=34% Similarity=0.318 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
.+..+.|.||+|+|||||+++|+..+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35679999999999999999999977543
No 391
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.43 E-value=0.0015 Score=51.65 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.--++|+|+.|+|||||++.+++-
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 446999999999999999999963
No 392
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.43 E-value=0.0014 Score=51.64 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
..-.++|+|+.|+|||||++.+++-
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999983
No 393
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.43 E-value=0.0015 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 394
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.43 E-value=0.0013 Score=53.46 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 395
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.42 E-value=0.0011 Score=52.28 Aligned_cols=26 Identities=23% Similarity=0.116 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+.-.++|+|+.|+|||||++.+++..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34569999999999999999999865
No 396
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.41 E-value=0.002 Score=49.89 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+---++|+|+.|+|||||++.+++-.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998743
No 397
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.41 E-value=0.0016 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=21.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 78 NERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 78 ~~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
..+.--++|+|+.|+|||||++.+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 35567799999999999999999985
No 398
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.41 E-value=0.0013 Score=55.98 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.++|+|++|+|||||++.|++.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998774
No 399
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.41 E-value=0.0015 Score=52.10 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
..--++|+|+.|+|||||++.+++-
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 400
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.41 E-value=0.0018 Score=57.33 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
++|+++.|.||+|||||||+..|+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999998884
No 401
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.41 E-value=0.0015 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.--++|+|+.|+|||||++.+++-
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345999999999999999998864
No 402
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.40 E-value=0.0017 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.|++-.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999754
No 403
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.40 E-value=0.0018 Score=55.10 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-.++|+|++|||||||++.|+|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999854
No 404
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.39 E-value=0.0014 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
+.-.++|+|+.|+|||||++.+++-
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999974
No 405
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.39 E-value=0.0016 Score=51.51 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.--++|+|+.|+|||||++.+++-.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3469999999999999999999853
No 406
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0015 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|++|+|||||++.+++-
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999998864
No 407
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.38 E-value=0.0016 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.|++-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 408
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.37 E-value=0.0018 Score=55.45 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 409
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.37 E-value=0.0017 Score=55.69 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--.++|+|+.|||||||++.|+|.-
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 3469999999999999999999964
No 410
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.37 E-value=0.0019 Score=51.57 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
..+.|.||+|+|||||++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999987654
No 411
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.35 E-value=0.0019 Score=51.29 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.+.--++|+|+.|+|||||++.+++-
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34556999999999999999999874
No 412
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.34 E-value=0.0013 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 413
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.34 E-value=0.0019 Score=52.49 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
..--++|+|+.|+|||||++.+++-
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 4556999999999999999999874
No 414
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.33 E-value=0.015 Score=53.07 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC-CC-cEEEeeccC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDI 118 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p-~G-~I~i~g~di 118 (222)
.+|+++.|.|++|+|||||+..|+..... .| .+.+...+.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 78999999999999999999988875543 33 566655443
No 415
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.31 E-value=0.0019 Score=50.06 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
.....+.|.||.|+|||||++.++..+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34667899999999999999999987643
No 416
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.30 E-value=0.002 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--.++|+|+.|+|||||++.+++-
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999973
No 417
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.29 E-value=0.002 Score=51.80 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--.++|+|+.|+|||||++.+++-.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999998743
No 418
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.28 E-value=0.0019 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.--++|+|+.|+|||||++.+++-.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999999999853
No 419
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.28 E-value=0.0022 Score=51.12 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+---++|+|+.|+|||||++.+.+-..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345699999999999999999998543
No 420
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.28 E-value=0.0013 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=9.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 421
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.27 E-value=0.0025 Score=54.06 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY 109 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~G 109 (222)
+|.++.|.|++||||||+++.|+..+...|
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998776553
No 422
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.27 E-value=0.0024 Score=53.12 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
++.+++|.|+.||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997653
No 423
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.26 E-value=0.0023 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
++.|+||+||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 424
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.23 E-value=0.0021 Score=51.43 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999974
No 425
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.23 E-value=0.0011 Score=60.91 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~ 119 (222)
+..+++|+|++|+|||||+..|++.+... .+|.+...|..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 34699999999999999999999988766 57888777654
No 426
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.22 E-value=0.0022 Score=50.60 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999974
No 427
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.21 E-value=0.0028 Score=52.72 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY 109 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~G 109 (222)
+|.++.|.|+.||||||+++.|...+...|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999999999877654
No 428
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.21 E-value=0.002 Score=54.64 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
--.++|+|..|+|||||++.|+|...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 44799999999999999999999643
No 429
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.20 E-value=0.0029 Score=53.37 Aligned_cols=28 Identities=36% Similarity=0.356 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
....-+.|.||+|+|||||+++|+..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456699999999999999999998664
No 430
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.17 E-value=0.0031 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH
Q 027509 80 RAFTVGIGGPVGTGKTALMLALC 102 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~ 102 (222)
+|.++.|.||.||||||++.-++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999974444
No 431
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.15 E-value=0.0027 Score=55.63 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
++|+++.|.||+|||||||+..++..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 78999999999999999999988874
No 432
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.15 E-value=0.0027 Score=56.88 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998654
No 433
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.15 E-value=0.0017 Score=54.73 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.++.+++|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6788999999999999999999988764
No 434
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.11 E-value=0.0027 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--++|+|+.|+|||||++.+++-.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC
Confidence 459999999999999999998743
No 435
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.09 E-value=0.0031 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
--.++|+|..|+|||||++.|++-.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999854
No 436
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.08 E-value=0.0031 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-.++|+|++|+|||||++.+++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999974
No 437
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.07 E-value=0.0031 Score=53.40 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-.++|+|+.|+|||||++.|++-.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 438
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.06 E-value=0.0039 Score=52.13 Aligned_cols=29 Identities=34% Similarity=0.243 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~ 108 (222)
+|.++.|.|+.||||||+++.|...+...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 68999999999999999999999987653
No 439
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.04 E-value=0.0046 Score=51.39 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di 118 (222)
+.-++.++|..|+|||||+..|+..+. . .++.+...|.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 357899999999999999999998776 6 4777766655
No 440
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.04 E-value=0.0075 Score=46.29 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di 118 (222)
..+.-+-|.||+|+|||+|.++|....... +.+.++...+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~ 62 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP 62 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCC
Confidence 345568999999999999999999876554 3322655544
No 441
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.04 E-value=0.0013 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.|++-
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 442
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.03 E-value=0.0013 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=5.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
.--++|+|+.|+|||||++.+++-
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999876
No 443
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.03 E-value=0.0037 Score=53.46 Aligned_cols=26 Identities=27% Similarity=0.148 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
..++|+|.+|+|||||++.|++....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 58999999999999999999996653
No 444
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.03 E-value=0.0042 Score=55.63 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 467999999999999999999998664
No 445
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0032 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 446
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.99 E-value=0.0042 Score=52.23 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
.+|.++.|.|+.||||||+++.|...+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999987766
No 447
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.98 E-value=0.0028 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
++.--++|+|+.|+|||||++.+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4566799999999999999999975
No 448
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.97 E-value=0.0037 Score=55.56 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.++.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998653
No 449
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.95 E-value=0.0047 Score=51.13 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
..-+.|.||+|+|||||+++|+..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999988543
No 450
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.94 E-value=0.0031 Score=57.79 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-.++|+|.+|+|||||++.|+|-
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999984
No 451
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.94 E-value=0.0035 Score=50.26 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gl 104 (222)
--++|+|+.|+|||||++.+++-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999863
No 452
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.94 E-value=0.0034 Score=54.21 Aligned_cols=24 Identities=50% Similarity=0.575 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcCcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
.+.|.||+|+|||||+++|+..+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999764
No 453
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.93 E-value=0.0032 Score=57.62 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
...+.|.||+|+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999866
No 454
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.90 E-value=0.0044 Score=55.11 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
..+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999987653
No 455
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0042 Score=49.06 Aligned_cols=23 Identities=48% Similarity=0.647 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998754
No 456
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.83 E-value=0.0042 Score=53.93 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
..+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5577899999999999999999998764
No 457
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.80 E-value=0.0049 Score=57.50 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
-+|+.++|+|++|+|||||++.|+.....
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 67999999999999999999999886553
No 458
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.77 E-value=0.0057 Score=49.98 Aligned_cols=39 Identities=26% Similarity=0.132 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHc--CcCCCCcEEEeecc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCK--FLRDKYSLAAVTND 117 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~G--ll~p~G~I~i~g~d 117 (222)
++|+++.|.|++|+|||||+.-++- .......+.+...+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 6899999999999999999876542 33222456555543
No 459
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.77 E-value=0.0076 Score=52.58 Aligned_cols=39 Identities=31% Similarity=0.351 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di 118 (222)
++..+.|.||+|+|||||++.++..+... ..+.+.+..+
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 35789999999999999999999987654 4455555443
No 460
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.77 E-value=0.03 Score=51.41 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di 118 (222)
.+|+++.|.|++|+|||||+..++.-.... ..+.+...+.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 789999999999999999988877644333 4677666554
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.76 E-value=0.0065 Score=50.08 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCCCCcEE
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLA 112 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~ 112 (222)
|.+++|=|+-||||||+++.|+..+.....+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~ 33 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 33 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 56899999999999999999998775433443
No 462
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.75 E-value=0.0045 Score=55.45 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeec
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN 116 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~ 116 (222)
++|+++.|.|++|+|||||...++...... +.+.+...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 689999999999999999998888755444 45555443
No 463
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.74 E-value=0.0048 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
++|+++.|.||+|+|||||+..++-
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999998875
No 464
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.65 E-value=0.006 Score=54.02 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHc----CcCCC-CcEEEe
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCK----FLRDK-YSLAAV 114 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~G----ll~p~-G~I~i~ 114 (222)
-.|..+.|+|++|+|||||...|.. ++..+ ..|...
T Consensus 142 ~~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~ 182 (314)
T 1ko7_A 142 VYGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREI 182 (314)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEc
Confidence 3588999999999999999999987 55444 444443
No 465
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.64 E-value=0.0025 Score=53.33 Aligned_cols=22 Identities=45% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHcCc
Q 027509 84 VGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 84 vgIiGpNGSGKSTLLk~L~Gll 105 (222)
+.|.||+|+|||||+++|+..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999999743
No 466
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.63 E-value=0.0074 Score=51.33 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
..+..+.|.||+|+|||||+++|+..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999888765
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.60 E-value=0.0072 Score=53.60 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
..+++|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 56899999999999999999987543
No 468
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.49 E-value=0.0066 Score=55.09 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|.+++|||||++.|++.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 469
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.48 E-value=0.0079 Score=56.46 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEeeccCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~g~di~ 119 (222)
.+..+++|+|++|||||||+..|+..+... -++.+...|+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 456799999999999999999999766654 35777776664
No 470
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.48 E-value=0.0073 Score=51.17 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-+||+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
No 471
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.012 Score=51.52 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
+..-+.|.||+|+|||||+++|+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44668999999999999999999866
No 472
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.42 E-value=0.0077 Score=50.69 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
....+.|.||+|+|||||+++|+..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45578899999999999999999864
No 473
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.40 E-value=0.0096 Score=51.94 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.....+.|.||.|+|||||++.++..+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999999865
No 474
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.39 E-value=0.0069 Score=55.14 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCc
Q 027509 83 TVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.++|+|.+|+|||||++.|+|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 475
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.38 E-value=0.0093 Score=51.51 Aligned_cols=27 Identities=33% Similarity=0.242 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+.-.++|+|.+|+|||||++.|+|...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 445799999999999999999999653
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.38 E-value=0.0087 Score=49.05 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCK 103 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~G 103 (222)
-.|.-+.|.|++|+|||||...|..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4578899999999999999988865
No 477
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.38 E-value=0.0093 Score=50.37 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
...-+.|.||+|+|||||+++|+..+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999998663
No 478
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.36 E-value=0.0053 Score=49.65 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCChHHHHHHH-HHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLA-LCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~-L~Gl 104 (222)
--.++|+|+.|+|||||++. +.+.
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34599999999999999998 5553
No 479
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.32 E-value=0.011 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
...+.|.||+|+|||+|.++|+..+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45677889999999999999998663
No 480
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.26 E-value=0.011 Score=50.45 Aligned_cols=32 Identities=16% Similarity=-0.029 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcCCCCcEEEee
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~p~G~I~i~g 115 (222)
|.++.|.||.|+|||||++.++... +.++++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~---~~~~~~~ 62 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER---PGILIDC 62 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS---SEEEEEH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc---CcEEEEe
Confidence 5899999999999999999998654 3444443
No 481
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.22 E-value=0.018 Score=48.19 Aligned_cols=36 Identities=22% Similarity=0.036 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC-C-cEEEee
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVT 115 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G-~I~i~g 115 (222)
.+.-+.|.||+|+|||+|++.|+...... . -+.++.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 34668899999999999999999877644 3 344543
No 482
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.21 E-value=0.0099 Score=51.55 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
+--++|+|+.|+|||||++.+++-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998875
No 483
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.20 E-value=0.012 Score=49.50 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEe
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV 114 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~ 114 (222)
.+|.++.|.|+.|+||||++..++.-+... .++.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 679999999999999999877666655444 356555
No 484
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.19 E-value=0.0086 Score=56.88 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcCCC-CcEEEe
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV 114 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G~I~i~ 114 (222)
...++.|.|++|+||||+++.|...+... .+|.+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 46899999999999999999999877654 456554
No 485
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.19 E-value=0.0088 Score=52.71 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
....+.|.||+|+|||||.++|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 455699999999999999999998763
No 486
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.18 E-value=0.0099 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.+++|+||+|||||||.+.|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 487
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.15 E-value=0.0061 Score=53.87 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCc
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll 105 (222)
-.++|+|..++|||||++.|+|.-
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999964
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.12 E-value=0.013 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+.-+.|.||+|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998665
No 489
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.11 E-value=0.014 Score=51.64 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.....+.|.||+|+|||||+++|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 446679999999999999999998865
No 490
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.08 E-value=0.011 Score=54.84 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcC
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gl 104 (222)
+-.++|+|++|+|||||++.|++-
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445999999999999999999984
No 491
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.05 E-value=0.01 Score=56.05 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
.--.++|+|..|+|||||++.|+|.-
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999999953
No 492
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.03 E-value=0.012 Score=50.93 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
..+.|.||+|+|||||++.|+..+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999987543
No 493
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.02 E-value=0.02 Score=52.56 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=34.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcCCC-C-cEEEeeccCCC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFT 120 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~p~-G-~I~i~g~di~~ 120 (222)
.+..+++|+|++|+||||+.-.|+..+... | +|.+...|...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 456799999999999999999999877654 4 78887777643
No 494
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.02 E-value=0.0018 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHcCc
Q 027509 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (222)
Q Consensus 81 GeivgIiGpNGSGKSTLLk~L~Gll 105 (222)
---++|+|+.|+|||||++.|++-.
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998743
No 495
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.02 E-value=0.015 Score=50.48 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+..-+.|.||+|+|||+|+++|+..+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 345699999999999999999987643
No 496
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.99 E-value=0.01 Score=54.62 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHcCcCC
Q 027509 82 FTVGIGGPVGTGKTALMLALCKFLRD 107 (222)
Q Consensus 82 eivgIiGpNGSGKSTLLk~L~Gll~p 107 (222)
..+.|.||+|+|||||+++|+..+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35899999999999999999987654
No 497
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.98 E-value=0.0067 Score=46.53 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
...-+.|.||+|+|||+|.+.|.....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 345588999999999999999987654
No 498
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.97 E-value=0.013 Score=52.68 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 80 ~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
+--.++|+|..|+|||||++.|++...
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc
Confidence 345799999999999999999999543
No 499
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.90 E-value=0.01 Score=49.86 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHcCcC
Q 027509 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (222)
Q Consensus 79 ~~GeivgIiGpNGSGKSTLLk~L~Gll~ 106 (222)
++...+.|.||+|+||||+..+|+..+.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455799999999999999999998774
No 500
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.89 E-value=0.0088 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 027509 83 TVGIGGPVGTGKTALMLALCKF 104 (222)
Q Consensus 83 ivgIiGpNGSGKSTLLk~L~Gl 104 (222)
-|+|+|.++|||||||+.|++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcC
Confidence 3899999999999999999975
Done!