BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027511
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAF 62
V + ++ GDGP+ + ++ + ++DRV LG V +L + L S E+F
Sbjct: 240 VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLG--KQDNVAELLAMSDLMLLLSEKESF 297
Query: 63 CIAILEAASCGLLTVSTRVGGVPEVLPD-DMVVLAEPDPGDMVLAIRKAISLL 114
+ +LEA +CG+ + TRVGG+PEV+ D L E GD +AI LL
Sbjct: 298 GLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCE--VGDTTGVADQAIQLL 348
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAF 62
V + ++ GDGP+ + ++ + ++DRV LG V +L + L S E+F
Sbjct: 260 VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLG--KQDNVAELLAMSDLMLLLSEKESF 317
Query: 63 CIAILEAASCGLLTVSTRVGGVPEVLP-DDMVVLAEPDPGDMVLAIRKAISLL 114
+ +LEA +CG+ + TRVGG+PEV+ D L E GD +AI LL
Sbjct: 318 GLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCE--VGDTTGVADQAIQLL 368
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 4 KVRFIVGGDGPKRVR--LEEMREKH-SLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTE 60
++RFI+ G G + + EKH +++ EML VR + S + S E
Sbjct: 285 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEML---SREFVRELYGSVDFVIIPSYFE 341
Query: 61 AFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLPKIDP 119
F + LEA G + +++ VGG+ +++ ++ +L + DPG++ AI KA+ L + D
Sbjct: 342 PFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALE-LSRSDL 400
Query: 120 QVMHERMKK---LYNWHDVAKRTEIVY----DRALE 148
E KK ++W A+R Y DRA +
Sbjct: 401 SKFRENCKKRAMSFSWEKSAERYVKAYTGSIDRAFD 436
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 4 KVRFIVGGDGPKRVR--LEEMREKH-SLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTE 60
++RFI+ G G + + EKH +++ EML VR + S + S E
Sbjct: 286 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEML---SREFVRELYGSVDFVIIPSYFE 342
Query: 61 AFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLPKIDP 119
F + LEA G + +++ VGG+ +++ ++ +L + DPG++ AI KA+ L + D
Sbjct: 343 PFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALE-LSRSDL 401
Query: 120 QVMHERMKK---LYNWHDVAKRTEIVY----DRALE 148
E KK ++W A+R Y DRA +
Sbjct: 402 SKFRENCKKRAMSFSWEKSAERYVKAYTGSIDRAFD 437
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 4 KVRFIVGGDGPKRVR--LEEMREKH-SLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTE 60
++RFI+ G G + + EKH +++ EML VR + S + S E
Sbjct: 285 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEML---SREFVRELYGSVDFVIIPSYFE 341
Query: 61 AFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLPKIDP 119
F + LEA G + +++ VGG+ +++ ++ +L + DPG++ AI KA+ L + D
Sbjct: 342 PFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALE-LSRSDL 400
Query: 120 QVMHERMKK---LYNWHDVAKRTEIVY 143
E KK ++W A+R Y
Sbjct: 401 SKFRENCKKRAMSFSWEKSAERYVKAY 427
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 4 KVRFIVGGDGPKRVR--LEEMREKH-SLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTE 60
++RFI+ G G + + EKH +++ EML VR + S + S E
Sbjct: 70 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEML---SREFVRELYGSVDFVIIPSYFE 126
Query: 61 AFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLPKIDP 119
F + LEA G + +++ VGG+ +++ ++ +L + DPG++ AI KA+ L + D
Sbjct: 127 PFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALE-LSRSDL 185
Query: 120 QVMHERMKK 128
E KK
Sbjct: 186 SKFRENCKK 194
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 4 KVRFIV--GGDGPKRV--RLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLT 59
+R I+ G GP M E+ ++ R+ L P +++ +V + I S
Sbjct: 256 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFN 315
Query: 60 EAFCIAILEAASCGLLTVSTRVGGVP 85
E+F + +EA + G ++ RVGG+P
Sbjct: 316 ESFGLVAMEAQASGTPVIAARVGGLP 341
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 21/162 (12%)
Query: 4 KVRFIV--GGDGPKRV--RLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLT 59
+R I+ G GP M E+ ++ R+ L P +++ +V + I S
Sbjct: 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFN 335
Query: 60 EAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRK---AISLLPK 116
E+F + +EA + G ++ RVGG+P + +AE + G +V A +L
Sbjct: 336 ESFGLVAMEAQASGTPVIAARVGGLP-------IAVAEGETGLLVDGHSPHAWADALATL 388
Query: 117 IDPQVMHERM-------KKLYNWHDVAKRTEIVYDRALECPN 151
+D RM + ++W A + +Y+ A+ N
Sbjct: 389 LDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANEN 430
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 53 FLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLA-EPDPGDMVLAIRKAI 111
F+ +L EAF + ++EA +CGL T +T GG E++ +P GD
Sbjct: 668 FVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADF 727
Query: 112 SLLPKIDPQVMHE-------RMKKLYNWHDVAKR 138
K DP E R+++ Y W ++R
Sbjct: 728 FTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQR 761
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 34.7 bits (78), Expect = 0.042, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 53 FLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVL 88
F+ +L EAF + ++EA +CGL T +T GG E++
Sbjct: 668 FVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEII 703
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 28 LQDRVEMLGAVPHAQVRSVLISGHIFLNSSLT-------EAFCIAILEAASCGLLTVSTR 80
+ V+ LG + + + + L + IF + T E I LEA +CG+ ++
Sbjct: 251 VSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGT 310
Query: 81 VGGVPEVL 88
GG PE +
Sbjct: 311 SGGAPETV 318
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 28 LQDRVEMLGAVPHAQVRSVLISGHIFLNSSLT-------EAFCIAILEAASCGLLTVSTR 80
+ V+ LG + + + + L + IF + T E I LEA +CG+ ++
Sbjct: 251 VSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGT 310
Query: 81 VGGVPEVL 88
GG PE +
Sbjct: 311 SGGAPETV 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,501,079
Number of Sequences: 62578
Number of extensions: 242662
Number of successful extensions: 597
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 14
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)