Query 027511
Match_columns 222
No_of_seqs 219 out of 2773
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 11:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1111 N-acetylglucosaminyltr 100.0 6.2E-42 1.3E-46 283.9 15.2 200 1-202 223-422 (426)
2 cd03796 GT1_PIG-A_like This fa 100.0 1.8E-32 3.9E-37 239.7 16.4 174 2-175 222-397 (398)
3 PRK15427 colanic acid biosynth 100.0 2.2E-27 4.7E-32 208.5 15.4 144 2-145 251-405 (406)
4 TIGR03088 stp2 sugar transfera 99.9 1.1E-25 2.4E-30 194.7 14.2 142 3-146 228-373 (374)
5 PLN02949 transferase, transfer 99.9 2.7E-25 5.9E-30 197.6 16.2 147 2-149 301-460 (463)
6 PRK15490 Vi polysaccharide bio 99.9 2E-25 4.4E-30 198.7 15.2 142 2-145 427-575 (578)
7 PRK15484 lipopolysaccharide 1, 99.9 5.8E-25 1.3E-29 191.5 16.0 144 2-147 222-379 (380)
8 TIGR03449 mycothiol_MshA UDP-N 99.9 1.6E-24 3.4E-29 189.5 16.0 146 2-148 248-404 (405)
9 PLN02871 UDP-sulfoquinovose:DA 99.9 9.8E-25 2.1E-29 194.7 14.1 144 2-150 288-439 (465)
10 PRK15179 Vi polysaccharide bio 99.9 2E-24 4.3E-29 199.0 15.1 141 2-144 546-692 (694)
11 TIGR02472 sucr_P_syn_N sucrose 99.9 1.7E-24 3.8E-29 191.8 13.7 136 8-143 284-438 (439)
12 TIGR02918 accessory Sec system 99.9 1.9E-24 4.1E-29 193.9 13.6 140 2-145 348-499 (500)
13 cd05844 GT1_like_7 Glycosyltra 99.9 3.2E-24 6.8E-29 184.3 14.2 140 2-141 217-366 (367)
14 cd03805 GT1_ALG2_like This fam 99.9 4.3E-24 9.3E-29 185.5 14.2 137 3-139 244-392 (392)
15 PRK09922 UDP-D-galactose:(gluc 99.9 1.5E-23 3.3E-28 181.1 17.5 145 3-148 209-358 (359)
16 cd03792 GT1_Trehalose_phosphor 99.9 5.4E-24 1.2E-28 184.4 14.6 144 2-145 219-371 (372)
17 cd03802 GT1_AviGT4_like This f 99.9 1.4E-23 3E-28 177.9 16.0 139 2-144 195-335 (335)
18 PRK10307 putative glycosyl tra 99.9 1.1E-23 2.4E-28 184.9 15.6 146 2-149 257-411 (412)
19 TIGR02468 sucrsPsyn_pln sucros 99.9 1.1E-23 2.4E-28 198.4 15.4 146 3-150 511-675 (1050)
20 cd03818 GT1_ExpC_like This fam 99.9 7.6E-24 1.7E-28 185.1 13.5 139 2-140 241-395 (396)
21 cd03813 GT1_like_3 This family 99.9 5.4E-24 1.2E-28 190.5 12.8 140 2-144 322-475 (475)
22 cd04962 GT1_like_5 This family 99.9 1.9E-23 4E-28 179.8 14.6 141 3-145 226-370 (371)
23 cd03806 GT1_ALG11_like This fa 99.9 1.3E-23 2.9E-28 185.2 13.7 135 3-137 272-418 (419)
24 cd04946 GT1_AmsK_like This fam 99.9 1.6E-23 3.4E-28 184.1 13.5 137 4-140 263-406 (407)
25 cd04951 GT1_WbdM_like This fam 99.9 5E-23 1.1E-27 175.7 15.4 141 2-144 217-359 (360)
26 TIGR02470 sucr_synth sucrose s 99.9 2.4E-23 5.3E-28 192.4 14.1 141 3-143 580-745 (784)
27 PLN00142 sucrose synthase 99.9 4.7E-23 1E-27 190.7 14.5 142 2-143 602-768 (815)
28 cd04955 GT1_like_6 This family 99.9 6.6E-23 1.4E-27 175.4 13.9 139 4-144 221-363 (363)
29 PLN02939 transferase, transfer 99.9 1.8E-22 4E-27 188.0 16.5 144 3-149 807-970 (977)
30 PLN02846 digalactosyldiacylgly 99.9 1.8E-22 3.9E-27 178.2 15.7 135 2-145 257-391 (462)
31 cd03821 GT1_Bme6_like This fam 99.9 1.2E-22 2.6E-27 172.4 13.6 139 2-140 232-374 (375)
32 PRK14098 glycogen synthase; Pr 99.9 1.9E-22 4E-27 180.9 15.3 144 3-148 335-488 (489)
33 TIGR02149 glgA_Coryne glycogen 99.9 1.9E-22 4.2E-27 174.9 14.5 145 3-147 228-388 (388)
34 PLN02316 synthase/transferase 99.9 4.5E-22 9.8E-27 187.9 16.7 145 3-147 868-1035(1036)
35 cd03800 GT1_Sucrose_synthase T 99.9 2.1E-22 4.6E-27 174.4 13.4 139 2-140 249-397 (398)
36 cd03799 GT1_amsK_like This is 99.9 2.6E-22 5.7E-27 171.0 13.6 137 2-138 208-354 (355)
37 cd03807 GT1_WbnK_like This fam 99.9 4E-22 8.7E-27 168.6 13.8 141 2-144 222-365 (365)
38 cd03801 GT1_YqgM_like This fam 99.9 3.9E-22 8.5E-27 167.9 13.7 143 2-144 228-374 (374)
39 PRK00654 glgA glycogen synthas 99.9 6.7E-22 1.5E-26 176.6 15.8 143 3-148 310-465 (466)
40 PHA01630 putative group 1 glyc 99.9 7.4E-22 1.6E-26 168.9 14.3 135 2-145 171-330 (331)
41 cd04949 GT1_gtfA_like This fam 99.9 1.9E-22 4.2E-27 174.2 10.8 135 2-139 233-372 (372)
42 cd03798 GT1_wlbH_like This fam 99.9 9.9E-22 2.2E-26 166.2 14.3 144 2-145 231-376 (377)
43 cd03816 GT1_ALG1_like This fam 99.9 8.9E-22 1.9E-26 173.4 14.3 135 2-138 267-409 (415)
44 cd03825 GT1_wcfI_like This fam 99.9 9.9E-22 2.1E-26 168.0 13.9 137 2-145 223-364 (365)
45 cd03795 GT1_like_4 This family 99.9 6.8E-22 1.5E-26 168.6 12.6 133 4-136 218-357 (357)
46 PRK14099 glycogen synthase; Pr 99.9 1.1E-21 2.4E-26 175.7 14.3 141 3-150 323-483 (485)
47 cd03822 GT1_ecORF704_like This 99.9 1.1E-21 2.3E-26 167.1 13.5 141 2-144 214-366 (366)
48 PRK10125 putative glycosyl tra 99.9 9.1E-22 2E-26 172.8 13.1 131 3-145 270-404 (405)
49 cd03812 GT1_CapH_like This fam 99.9 1.1E-21 2.4E-26 167.6 13.0 112 2-115 221-333 (358)
50 PLN02501 digalactosyldiacylgly 99.9 2.8E-21 6E-26 174.8 15.5 133 2-143 575-707 (794)
51 cd03804 GT1_wbaZ_like This fam 99.9 3.3E-21 7.2E-26 165.4 15.1 127 5-139 222-350 (351)
52 cd03814 GT1_like_2 This family 99.9 1.8E-21 3.9E-26 165.4 13.2 135 3-144 226-364 (364)
53 TIGR03087 stp1 sugar transfera 99.9 2E-21 4.3E-26 170.0 13.4 136 2-144 257-395 (397)
54 TIGR02095 glgA glycogen/starch 99.9 1.8E-21 3.8E-26 174.1 13.3 139 4-145 320-472 (473)
55 cd03817 GT1_UGDG_like This fam 99.9 5.2E-21 1.1E-25 162.5 13.9 140 2-145 231-373 (374)
56 cd03808 GT1_cap1E_like This fa 99.9 4.2E-21 9.2E-26 161.7 13.0 137 2-140 217-358 (359)
57 cd03820 GT1_amsD_like This fam 99.9 5.9E-21 1.3E-25 160.2 13.2 136 2-140 207-347 (348)
58 PF00534 Glycos_transf_1: Glyc 99.9 3.3E-21 7.2E-26 149.3 9.6 123 2-124 45-171 (172)
59 PLN02275 transferase, transfer 99.8 9.7E-21 2.1E-25 164.5 12.9 109 2-111 259-371 (371)
60 PHA01633 putative glycosyl tra 99.8 3E-20 6.5E-25 158.4 15.5 128 4-140 183-334 (335)
61 cd03791 GT1_Glycogen_synthase_ 99.8 1.4E-20 3E-25 168.2 13.8 139 4-144 325-475 (476)
62 cd03819 GT1_WavL_like This fam 99.8 1.3E-20 2.7E-25 160.9 11.8 132 2-135 214-355 (355)
63 KOG0853 Glycosyltransferase [C 99.8 2.8E-20 6E-25 163.1 13.1 150 2-151 307-473 (495)
64 cd03809 GT1_mtfB_like This fam 99.8 1.6E-20 3.5E-25 159.8 10.6 137 3-140 225-364 (365)
65 cd03794 GT1_wbuB_like This fam 99.8 5.4E-20 1.2E-24 156.7 13.4 136 3-139 249-393 (394)
66 cd03823 GT1_ExpE7_like This fa 99.8 4.7E-20 1E-24 156.2 12.9 135 3-144 219-358 (359)
67 cd03811 GT1_WabH_like This fam 99.8 3.8E-19 8.3E-24 149.2 12.0 128 2-131 218-352 (353)
68 cd04950 GT1_like_1 Glycosyltra 99.7 2.8E-17 6.1E-22 142.9 13.1 137 2-145 230-371 (373)
69 TIGR02400 trehalose_OtsA alpha 99.7 9.6E-17 2.1E-21 142.7 13.9 136 5-143 295-454 (456)
70 COG0438 RfaG Glycosyltransfera 99.7 3E-16 6.5E-21 130.5 15.8 145 4-148 230-379 (381)
71 PRK05749 3-deoxy-D-manno-octul 99.7 3.6E-17 7.8E-22 144.4 10.1 143 2-148 260-422 (425)
72 cd03788 GT1_TPS Trehalose-6-Ph 99.7 1.2E-16 2.5E-21 142.6 10.6 135 5-142 300-458 (460)
73 KOG1387 Glycosyltransferase [C 99.6 9.9E-15 2.1E-19 121.8 13.5 148 3-150 304-463 (465)
74 cd01635 Glycosyltransferase_GT 99.6 6.7E-15 1.5E-19 117.1 11.5 95 2-96 133-228 (229)
75 PLN03063 alpha,alpha-trehalose 99.6 5.4E-15 1.2E-19 139.2 12.3 137 11-148 326-480 (797)
76 PF13692 Glyco_trans_1_4: Glyc 99.6 1.6E-15 3.4E-20 112.9 6.5 102 2-113 32-135 (135)
77 cd03793 GT1_Glycogen_synthase_ 99.6 3.8E-15 8.3E-20 133.4 8.6 109 40-148 465-589 (590)
78 PRK14501 putative bifunctional 99.6 6.7E-15 1.4E-19 138.0 10.2 141 4-148 300-465 (726)
79 TIGR03713 acc_sec_asp1 accesso 99.5 7.9E-14 1.7E-18 125.7 11.9 138 1-143 348-519 (519)
80 PRK13609 diacylglycerol glucos 99.5 1E-13 2.2E-18 120.6 11.4 136 2-146 228-372 (380)
81 PRK09814 beta-1,6-galactofuran 99.5 6.8E-14 1.5E-18 120.0 9.5 115 2-126 188-313 (333)
82 COG0297 GlgA Glycogen synthase 99.5 7E-13 1.5E-17 117.9 15.9 145 5-151 324-483 (487)
83 PF13524 Glyco_trans_1_2: Glyc 99.5 4.7E-14 1E-18 98.5 6.3 89 52-140 1-91 (92)
84 PRK13608 diacylglycerol glucos 99.5 3.2E-13 7E-18 118.2 12.1 138 2-148 229-374 (391)
85 TIGR00236 wecB UDP-N-acetylglu 99.5 6E-13 1.3E-17 115.2 11.2 108 2-115 228-336 (365)
86 PLN02605 monogalactosyldiacylg 99.4 1E-12 2.2E-17 114.7 11.7 127 3-141 240-377 (382)
87 cd03785 GT1_MurG MurG is an N- 99.4 1.3E-12 2.8E-17 112.0 8.9 123 3-135 210-347 (350)
88 PRK00726 murG undecaprenyldiph 99.3 9.4E-12 2E-16 107.3 11.4 129 5-144 214-356 (357)
89 TIGR02398 gluc_glyc_Psyn gluco 99.3 2.6E-11 5.7E-16 108.2 14.3 135 4-141 320-478 (487)
90 KOG2941 Beta-1,4-mannosyltrans 99.3 2.2E-11 4.8E-16 102.0 10.8 113 2-114 291-406 (444)
91 TIGR01133 murG undecaprenyldip 99.3 1E-11 2.2E-16 106.4 8.1 113 4-125 209-335 (348)
92 PRK00025 lpxB lipid-A-disaccha 99.2 6.2E-11 1.3E-15 103.0 11.1 103 2-115 218-343 (380)
93 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 1.6E-10 3.5E-15 99.6 12.6 107 4-115 231-339 (363)
94 TIGR02919 accessory Sec system 99.2 2E-10 4.3E-15 101.7 12.1 109 1-115 303-413 (438)
95 PLN03064 alpha,alpha-trehalose 99.1 9.4E-10 2E-14 104.5 13.9 144 2-147 392-563 (934)
96 TIGR02094 more_P_ylases alpha- 99.0 7.4E-09 1.6E-13 95.0 13.4 140 3-143 423-598 (601)
97 PF05693 Glycogen_syn: Glycoge 98.8 9.9E-09 2.1E-13 92.4 7.0 137 16-152 423-588 (633)
98 TIGR00215 lpxB lipid-A-disacch 98.8 1.3E-07 2.9E-12 82.8 12.3 104 2-114 223-348 (385)
99 cd04299 GT1_Glycogen_Phosphory 98.6 7.7E-07 1.7E-11 83.7 12.2 140 4-144 513-688 (778)
100 PF13844 Glyco_transf_41: Glyc 98.6 5E-07 1.1E-11 80.2 10.2 144 2-146 312-467 (468)
101 PF00982 Glyco_transf_20: Glyc 98.3 1.6E-05 3.5E-10 71.3 14.1 110 32-142 355-471 (474)
102 TIGR03568 NeuC_NnaA UDP-N-acet 98.1 3.5E-05 7.6E-10 67.1 11.2 77 29-112 261-338 (365)
103 COG3914 Spy Predicted O-linked 98.1 3.6E-05 7.9E-10 69.0 11.1 146 2-148 457-616 (620)
104 TIGR01426 MGT glycosyltransfer 98.1 2.6E-05 5.6E-10 68.2 9.7 108 28-142 273-389 (392)
105 COG1519 KdtA 3-deoxy-D-manno-o 98.1 2E-05 4.3E-10 68.5 8.3 126 1-128 257-403 (419)
106 PRK10117 trehalose-6-phosphate 98.0 8.8E-05 1.9E-09 66.3 12.5 114 32-148 333-456 (474)
107 COG4641 Uncharacterized protei 97.9 2.4E-05 5.2E-10 67.0 5.5 118 31-148 238-364 (373)
108 TIGR03492 conserved hypothetic 97.8 0.00022 4.9E-09 62.7 11.1 106 3-115 237-366 (396)
109 cd03784 GT1_Gtf_like This fami 97.7 0.00015 3.3E-09 63.4 7.6 78 29-113 287-372 (401)
110 PLN02205 alpha,alpha-trehalose 97.7 0.00066 1.4E-08 65.1 12.2 112 32-146 417-552 (854)
111 PF02350 Epimerase_2: UDP-N-ac 97.6 0.00079 1.7E-08 58.2 11.2 102 3-113 213-318 (346)
112 KOG3742 Glycogen synthase [Car 97.6 4.1E-05 9E-10 66.8 3.0 117 41-157 492-624 (692)
113 TIGR03590 PseG pseudaminic aci 97.5 0.0005 1.1E-08 57.6 8.5 63 9-81 205-268 (279)
114 COG0707 MurG UDP-N-acetylgluco 97.5 0.00075 1.6E-08 58.6 9.7 91 16-115 224-326 (357)
115 COG0380 OtsA Trehalose-6-phosp 97.5 0.0017 3.8E-08 58.1 11.4 109 32-143 361-477 (486)
116 COG1819 Glycosyl transferases, 97.2 0.001 2.2E-08 58.8 7.4 108 27-141 281-397 (406)
117 TIGR00661 MJ1255 conserved hyp 97.0 0.0058 1.3E-07 52.1 9.4 80 29-114 228-315 (321)
118 PF13528 Glyco_trans_1_3: Glyc 97.0 0.0045 9.8E-08 52.3 8.4 75 30-109 232-316 (318)
119 PF04101 Glyco_tran_28_C: Glyc 96.9 7.5E-05 1.6E-09 57.5 -2.4 80 30-115 55-146 (167)
120 PHA03392 egt ecdysteroid UDP-g 96.8 0.0026 5.6E-08 57.9 5.9 82 27-115 343-434 (507)
121 PRK02797 4-alpha-L-fucosyltran 96.8 0.04 8.6E-07 46.6 12.4 136 3-149 174-320 (322)
122 COG0058 GlgP Glucan phosphoryl 96.8 0.0096 2.1E-07 55.8 9.5 98 2-99 521-630 (750)
123 PRK12446 undecaprenyldiphospho 96.7 0.012 2.7E-07 50.9 9.3 70 41-114 244-326 (352)
124 PF10087 DUF2325: Uncharacteri 96.3 0.015 3.2E-07 40.7 6.1 79 7-87 2-89 (97)
125 COG0381 WecB UDP-N-acetylgluco 96.3 0.06 1.3E-06 46.8 10.7 135 3-147 236-372 (383)
126 PF02684 LpxB: Lipid-A-disacch 96.2 0.043 9.4E-07 47.9 9.4 106 1-115 215-342 (373)
127 PF15024 Glyco_transf_18: Glyc 96.0 0.059 1.3E-06 49.0 9.6 108 29-145 321-455 (559)
128 PF00201 UDPGT: UDP-glucoronos 95.9 0.011 2.3E-07 53.4 4.5 92 30-131 323-424 (500)
129 PF07429 Glyco_transf_56: 4-al 95.7 0.26 5.7E-06 42.4 11.7 110 3-113 213-333 (360)
130 cd03789 GT1_LPS_heptosyltransf 95.5 0.083 1.8E-06 43.9 8.3 75 4-83 153-227 (279)
131 COG0763 LpxB Lipid A disacchar 95.4 0.099 2.1E-06 45.4 8.2 105 1-114 219-345 (381)
132 PLN02670 transferase, transfer 95.4 0.057 1.2E-06 48.7 7.1 110 32-146 341-466 (472)
133 TIGR02093 P_ylase glycogen/sta 95.4 0.053 1.1E-06 51.4 7.1 102 4-105 566-686 (794)
134 PLN03004 UDP-glycosyltransfera 95.3 0.036 7.7E-07 49.7 5.7 79 30-113 334-424 (451)
135 PLN02410 UDP-glucoronosyl/UDP- 95.3 0.051 1.1E-06 48.7 6.6 78 30-114 324-411 (451)
136 PLN02562 UDP-glycosyltransfera 95.2 0.032 6.9E-07 50.0 5.0 80 30-114 328-414 (448)
137 PRK14986 glycogen phosphorylas 95.2 0.094 2E-06 50.0 8.1 75 31-105 623-702 (815)
138 PF00343 Phosphorylase: Carboh 94.8 0.14 3.1E-06 48.1 8.1 100 4-103 483-601 (713)
139 PF01113 DapB_N: Dihydrodipico 94.6 0.085 1.8E-06 38.6 5.1 78 5-85 1-103 (124)
140 cd04300 GT1_Glycogen_Phosphory 94.3 0.14 2.9E-06 48.9 7.0 75 31-105 610-689 (797)
141 PRK14985 maltodextrin phosphor 94.2 0.16 3.4E-06 48.3 7.0 75 31-105 609-688 (798)
142 PLN02173 UDP-glucosyl transfer 94.1 0.14 3E-06 46.0 6.3 80 30-114 317-409 (449)
143 PLN03007 UDP-glucosyltransfera 94.0 0.31 6.8E-06 44.1 8.5 80 30-114 345-441 (482)
144 TIGR02193 heptsyl_trn_I lipopo 93.7 1.2 2.5E-05 37.7 11.1 100 4-111 211-319 (319)
145 PLN02555 limonoid glucosyltran 93.7 0.24 5.3E-06 44.8 7.1 80 30-114 337-430 (480)
146 PLN02448 UDP-glycosyltransfera 93.4 0.3 6.5E-06 43.9 7.3 78 30-114 323-416 (459)
147 PLN02764 glycosyltransferase f 93.4 0.41 9E-06 43.0 8.0 76 32-114 319-408 (453)
148 PLN02554 UDP-glycosyltransfera 93.2 0.17 3.8E-06 45.7 5.4 76 30-112 342-439 (481)
149 PLN02208 glycosyltransferase f 93.2 0.39 8.5E-06 43.0 7.6 79 31-114 312-402 (442)
150 PRK10916 ADP-heptose:LPS hepto 92.9 0.62 1.4E-05 40.1 8.3 72 4-80 213-287 (348)
151 TIGR02201 heptsyl_trn_III lipo 92.9 0.72 1.6E-05 39.6 8.6 72 4-80 213-286 (344)
152 PRK10422 lipopolysaccharide co 92.8 0.75 1.6E-05 39.7 8.5 72 4-80 215-288 (352)
153 TIGR02195 heptsyl_trn_II lipop 92.7 0.74 1.6E-05 39.3 8.5 71 4-80 207-277 (334)
154 PLN02210 UDP-glucosyl transfer 92.6 0.44 9.4E-06 42.9 7.1 77 31-114 325-416 (456)
155 PLN02863 UDP-glucoronosyl/UDP- 92.6 0.56 1.2E-05 42.5 7.8 75 31-112 344-432 (477)
156 PLN02207 UDP-glycosyltransfera 92.6 0.34 7.5E-06 43.7 6.4 76 30-112 332-425 (468)
157 PLN00414 glycosyltransferase f 92.5 0.49 1.1E-05 42.5 7.2 76 32-114 314-403 (446)
158 PLN02152 indole-3-acetate beta 92.5 0.37 8.1E-06 43.3 6.4 80 29-113 326-417 (455)
159 PF04464 Glyphos_transf: CDP-G 92.4 0.54 1.2E-05 40.7 7.3 80 28-115 250-338 (369)
160 PF04007 DUF354: Protein of un 91.9 2.2 4.7E-05 36.9 10.2 64 45-113 244-310 (335)
161 PLN02992 coniferyl-alcohol glu 91.8 0.73 1.6E-05 41.8 7.5 79 31-114 339-428 (481)
162 PRK10964 ADP-heptose:LPS hepto 91.5 2.6 5.6E-05 35.8 10.3 70 4-81 210-280 (322)
163 COG4671 Predicted glycosyl tra 91.2 2.7 5.9E-05 36.4 9.7 103 7-115 254-367 (400)
164 PRK10017 colanic acid biosynth 90.9 4.1 8.9E-05 36.4 11.3 95 16-115 293-394 (426)
165 PLN02167 UDP-glycosyltransfera 90.8 0.83 1.8E-05 41.3 6.8 52 62-113 367-434 (475)
166 PRK01021 lpxB lipid-A-disaccha 90.1 3.4 7.3E-05 38.5 10.1 69 3-80 445-514 (608)
167 COG3980 spsG Spore coat polysa 89.9 1.5 3.1E-05 36.9 6.9 54 13-76 196-249 (318)
168 COG0859 RfaF ADP-heptose:LPS h 89.7 1.9 4.1E-05 37.0 7.9 70 5-81 209-278 (334)
169 PF01075 Glyco_transf_9: Glyco 89.4 2.3 5E-05 34.4 7.9 70 5-80 138-209 (247)
170 KOG4626 O-linked N-acetylgluco 89.4 1.4 3E-05 41.0 6.9 146 2-148 786-943 (966)
171 PF03016 Exostosin: Exostosin 87.7 1 2.2E-05 37.6 4.9 57 39-95 226-285 (302)
172 PLN02534 UDP-glycosyltransfera 87.5 4.3 9.3E-05 37.0 9.0 78 30-112 344-443 (491)
173 KOG1021 Acetylglucosaminyltran 86.8 8.3 0.00018 34.8 10.4 106 7-113 293-409 (464)
174 PLN00164 glucosyltransferase; 86.5 2.7 5.9E-05 38.1 7.1 52 63-114 367-432 (480)
175 PF02826 2-Hacid_dh_C: D-isome 81.2 14 0.0003 28.6 8.3 80 4-85 36-132 (178)
176 PF11071 DUF2872: Protein of u 80.9 12 0.00025 27.7 7.0 95 14-111 9-140 (141)
177 PF06258 Mito_fiss_Elm1: Mitoc 80.7 14 0.0003 31.6 8.7 51 30-83 209-259 (311)
178 PRK00048 dihydrodipicolinate r 80.6 8.4 0.00018 31.8 7.2 77 5-84 2-95 (257)
179 PRK06718 precorrin-2 dehydroge 80.0 28 0.00061 27.6 12.2 85 4-90 10-111 (202)
180 PRK14089 ipid-A-disaccharide s 79.5 4.6 0.0001 35.0 5.5 33 43-80 229-261 (347)
181 KOG1050 Trehalose-6-phosphate 79.3 17 0.00036 34.9 9.4 84 32-115 355-442 (732)
182 PF00389 2-Hacid_dh: D-isomer 79.0 22 0.00048 25.8 8.9 66 17-87 9-74 (133)
183 COG1817 Uncharacterized protei 78.8 23 0.0005 30.3 9.1 93 17-115 207-316 (346)
184 PRK05562 precorrin-2 dehydroge 78.7 34 0.00073 27.8 12.6 85 4-90 25-127 (223)
185 PF05159 Capsule_synth: Capsul 78.1 4.8 0.0001 33.3 5.1 36 41-81 191-226 (269)
186 PLN03015 UDP-glucosyl transfer 78.1 4.9 0.00011 36.4 5.4 76 32-112 337-425 (470)
187 PRK05395 3-dehydroquinate dehy 77.7 28 0.0006 26.3 9.2 94 17-112 33-141 (146)
188 PF03435 Saccharop_dh: Sacchar 77.3 16 0.00036 31.8 8.4 74 2-79 20-97 (386)
189 cd05565 PTS_IIB_lactose PTS_II 77.3 13 0.00027 26.1 6.2 71 7-80 4-79 (99)
190 PTZ00182 3-methyl-2-oxobutanat 76.1 14 0.0003 32.2 7.5 105 4-110 233-354 (355)
191 cd05564 PTS_IIB_chitobiose_lic 75.7 13 0.00028 25.7 6.0 72 7-81 3-79 (96)
192 PF12738 PTCB-BRCT: twin BRCT 74.7 12 0.00027 23.3 5.2 60 6-80 2-62 (63)
193 PRK08410 2-hydroxyacid dehydro 73.7 31 0.00066 29.4 8.9 81 4-86 145-238 (311)
194 PTZ00408 NAD-dependent deacety 73.4 50 0.0011 27.1 10.1 79 28-108 149-232 (242)
195 TIGR02853 spore_dpaA dipicolin 73.2 26 0.00057 29.4 8.3 72 4-77 151-237 (287)
196 TIGR00036 dapB dihydrodipicoli 72.4 12 0.00025 31.1 6.0 75 5-82 2-101 (266)
197 KOG1192 UDP-glucuronosyl and U 71.6 11 0.00024 33.8 6.1 82 30-115 335-424 (496)
198 TIGR01088 aroQ 3-dehydroquinat 71.5 41 0.00088 25.2 9.3 94 17-112 31-139 (141)
199 PF04230 PS_pyruv_trans: Polys 71.5 33 0.00072 27.3 8.4 45 32-81 240-284 (286)
200 PRK06932 glycerate dehydrogena 71.4 32 0.0007 29.3 8.5 81 4-86 147-239 (314)
201 PLN02928 oxidoreductase family 71.4 29 0.00063 30.1 8.3 80 4-85 159-267 (347)
202 PRK06487 glycerate dehydrogena 71.4 28 0.00061 29.7 8.2 80 5-86 149-239 (317)
203 TIGR03609 S_layer_CsaB polysac 70.9 28 0.0006 29.1 8.0 37 38-79 239-275 (298)
204 COG0111 SerA Phosphoglycerate 70.8 45 0.00098 28.6 9.3 81 4-86 142-239 (324)
205 PF13407 Peripla_BP_4: Peripla 70.6 53 0.0011 26.2 9.9 66 17-82 18-89 (257)
206 TIGR00853 pts-lac PTS system, 70.4 19 0.00042 24.9 5.8 72 7-82 7-84 (95)
207 PF00205 TPP_enzyme_M: Thiamin 70.3 9.1 0.0002 28.0 4.4 50 7-56 15-84 (137)
208 PRK13015 3-dehydroquinate dehy 69.6 46 0.001 25.1 9.2 94 17-112 33-141 (146)
209 cd00027 BRCT Breast Cancer Sup 69.6 23 0.00049 21.5 6.2 63 4-80 1-65 (72)
210 cd05312 NAD_bind_1_malic_enz N 69.5 40 0.00086 28.4 8.4 36 42-77 96-136 (279)
211 PRK00676 hemA glutamyl-tRNA re 68.9 54 0.0012 28.4 9.3 137 3-147 173-320 (338)
212 TIGR00518 alaDH alanine dehydr 68.8 49 0.0011 28.9 9.3 85 3-89 166-278 (370)
213 COG0373 HemA Glutamyl-tRNA red 68.1 54 0.0012 29.3 9.3 86 4-90 178-282 (414)
214 PRK13940 glutamyl-tRNA reducta 67.5 64 0.0014 28.7 9.8 103 3-108 180-301 (414)
215 PF10093 DUF2331: Uncharacteri 67.3 10 0.00022 33.2 4.6 43 31-79 245-288 (374)
216 COG3660 Predicted nucleoside-d 65.9 36 0.00078 28.6 7.2 39 41-82 236-274 (329)
217 COG3473 Maleate cis-trans isom 65.7 15 0.00032 29.6 4.8 55 27-82 153-213 (238)
218 PF11167 DUF2953: Protein of u 65.0 7.2 0.00016 23.7 2.5 15 191-205 36-50 (53)
219 PRK15438 erythronate-4-phospha 64.8 38 0.00083 29.8 7.8 81 4-86 116-213 (378)
220 PF04312 DUF460: Protein of un 64.8 22 0.00047 26.5 5.3 37 53-89 56-93 (138)
221 COG2099 CobK Precorrin-6x redu 64.7 81 0.0018 26.2 9.1 79 30-111 45-128 (257)
222 PRK05447 1-deoxy-D-xylulose 5- 64.6 43 0.00094 29.5 8.0 75 5-80 28-122 (385)
223 PRK06719 precorrin-2 dehydroge 63.2 54 0.0012 24.8 7.5 82 4-87 13-108 (157)
224 cd01408 SIRT1 SIRT1: Eukaryoti 62.9 66 0.0014 26.2 8.4 76 29-104 151-232 (235)
225 PRK11790 D-3-phosphoglycerate 62.8 63 0.0014 28.7 8.9 81 4-86 151-245 (409)
226 PRK15409 bifunctional glyoxyla 62.1 61 0.0013 27.8 8.4 80 5-86 146-242 (323)
227 cd01080 NAD_bind_m-THF_DH_Cycl 62.0 35 0.00077 26.3 6.3 55 3-60 43-98 (168)
228 PRK07574 formate dehydrogenase 61.4 58 0.0012 28.8 8.3 81 4-86 192-290 (385)
229 PRK12862 malic enzyme; Reviewe 61.3 62 0.0013 31.3 9.0 83 3-86 192-297 (763)
230 PRK13304 L-aspartate dehydroge 61.0 40 0.00087 27.9 7.0 44 41-84 53-96 (265)
231 PLN02683 pyruvate dehydrogenas 60.9 37 0.0008 29.6 7.0 106 6-113 230-352 (356)
232 PRK15469 ghrA bifunctional gly 60.1 60 0.0013 27.7 8.0 81 4-86 136-232 (312)
233 cd00762 NAD_bind_malic_enz NAD 59.9 68 0.0015 26.6 7.9 39 42-80 97-140 (254)
234 PRK09212 pyruvate dehydrogenas 59.5 54 0.0012 28.1 7.7 107 5-113 202-325 (327)
235 PRK08306 dipicolinate synthase 59.4 43 0.00093 28.3 7.0 79 4-84 152-247 (296)
236 PF00533 BRCT: BRCA1 C Terminu 58.9 12 0.00025 24.0 2.8 66 2-80 6-72 (78)
237 PF03447 NAD_binding_3: Homose 58.7 6.6 0.00014 27.9 1.7 44 42-85 50-95 (117)
238 PRK08328 hypothetical protein; 58.3 64 0.0014 26.1 7.6 52 35-87 104-157 (231)
239 PRK00257 erythronate-4-phospha 57.4 63 0.0014 28.5 7.8 81 4-86 116-213 (381)
240 PRK08366 vorA 2-ketoisovalerat 57.1 78 0.0017 28.0 8.4 70 3-72 258-336 (390)
241 PF13241 NAD_binding_7: Putati 56.9 17 0.00036 25.4 3.5 84 3-88 6-100 (103)
242 TIGR03682 arCOG04112 arCOG0411 56.8 18 0.0004 30.8 4.3 58 17-79 232-289 (308)
243 PF03568 Peptidase_C50: Peptid 55.8 31 0.00067 30.3 5.7 20 59-79 354-373 (383)
244 TIGR03837 efp_adjacent_2 conse 54.9 20 0.00043 31.4 4.1 44 31-80 243-287 (371)
245 TIGR01470 cysG_Nterm siroheme 53.6 1.1E+02 0.0024 24.2 12.1 85 4-90 9-111 (205)
246 PRK13243 glyoxylate reductase; 53.3 61 0.0013 27.8 7.0 81 4-86 150-246 (333)
247 KOG3079 Uridylate kinase/adeny 52.8 58 0.0013 25.7 6.1 61 2-76 7-68 (195)
248 PF10649 DUF2478: Protein of u 52.8 31 0.00067 26.5 4.5 39 43-81 86-131 (159)
249 COG2247 LytB Putative cell wal 52.8 1.1E+02 0.0023 26.4 8.0 77 2-81 75-163 (337)
250 PF00852 Glyco_transf_10: Glyc 52.7 19 0.0004 31.2 3.8 97 16-115 191-300 (349)
251 PLN02306 hydroxypyruvate reduc 52.6 1.4E+02 0.0031 26.3 9.3 81 4-86 165-278 (386)
252 PRK09590 celB cellobiose phosp 52.3 70 0.0015 22.5 6.0 71 7-80 5-82 (104)
253 PRK13302 putative L-aspartate 51.8 75 0.0016 26.4 7.1 42 41-82 59-100 (271)
254 PF11238 DUF3039: Protein of u 50.9 13 0.00028 23.3 1.8 16 64-79 15-30 (58)
255 COG0757 AroQ 3-dehydroquinate 50.4 1E+02 0.0022 23.1 6.7 94 17-112 32-140 (146)
256 COG1154 Dxs Deoxyxylulose-5-ph 50.2 66 0.0014 30.1 6.9 108 6-113 503-624 (627)
257 CHL00144 odpB pyruvate dehydro 50.1 92 0.002 26.7 7.6 106 6-113 203-325 (327)
258 TIGR02130 dapB_plant dihydrodi 49.8 1.6E+02 0.0034 24.8 9.0 60 40-99 58-124 (275)
259 TIGR00272 DPH2 diphthamide bio 49.4 30 0.00065 31.6 4.7 60 17-80 301-360 (496)
260 PF01220 DHquinase_II: Dehydro 48.7 49 0.0011 24.8 4.9 93 17-111 32-139 (140)
261 PRK07232 bifunctional malic en 48.7 1.2E+02 0.0025 29.4 8.6 76 3-79 184-282 (752)
262 PF13263 PHP_C: PHP-associated 48.5 8.7 0.00019 23.7 0.8 43 66-108 8-52 (56)
263 COG3414 SgaB Phosphotransferas 48.0 47 0.001 23.0 4.5 49 7-58 5-58 (93)
264 PRK12861 malic enzyme; Reviewe 47.8 98 0.0021 30.0 7.9 76 3-79 188-286 (764)
265 cd05213 NAD_bind_Glutamyl_tRNA 47.0 1.8E+02 0.0039 24.6 9.8 105 3-108 177-301 (311)
266 TIGR01035 hemA glutamyl-tRNA r 46.8 2.1E+02 0.0045 25.4 12.9 86 3-89 179-284 (417)
267 smart00292 BRCT breast cancer 46.7 48 0.001 20.5 4.3 67 2-80 3-71 (80)
268 PRK00045 hemA glutamyl-tRNA re 46.6 1.6E+02 0.0034 26.2 8.8 86 3-89 181-287 (423)
269 PRK08367 porA pyruvate ferredo 46.6 1.9E+02 0.0041 25.6 9.1 101 3-112 260-374 (394)
270 KOG3349 Predicted glycosyltran 46.5 41 0.00088 25.7 4.2 38 40-81 71-108 (170)
271 COG3613 Nucleoside 2-deoxyribo 46.1 75 0.0016 24.7 5.7 80 3-82 3-107 (172)
272 TIGR00725 conserved hypothetic 45.9 1.3E+02 0.0028 22.8 8.5 46 40-87 82-130 (159)
273 KOG0069 Glyoxylate/hydroxypyru 45.9 82 0.0018 27.3 6.5 80 5-86 163-259 (336)
274 cd00466 DHQase_II Dehydroquina 45.3 1.3E+02 0.0028 22.6 9.1 94 17-112 31-139 (140)
275 PRK08605 D-lactate dehydrogena 45.2 1.4E+02 0.003 25.6 8.0 81 4-86 146-242 (332)
276 COG1570 XseA Exonuclease VII, 45.1 2E+02 0.0043 26.0 8.9 60 11-70 102-185 (440)
277 COG4394 Uncharacterized protei 45.1 88 0.0019 26.7 6.3 46 31-81 239-284 (370)
278 PRK06436 glycerate dehydrogena 45.0 1.2E+02 0.0026 25.7 7.4 80 4-85 122-214 (303)
279 smart00672 CAP10 Putative lipo 44.9 1.1E+02 0.0024 25.2 7.1 84 62-145 157-248 (256)
280 PF01262 AlaDh_PNT_C: Alanine 44.2 37 0.0008 25.9 3.9 89 3-91 19-152 (168)
281 TIGR02536 eut_hyp ethanolamine 43.1 1.5E+02 0.0032 23.8 7.2 37 46-82 50-99 (207)
282 COG1052 LdhA Lactate dehydroge 42.9 2.2E+02 0.0047 24.5 9.6 80 5-86 147-242 (324)
283 PRK14138 NAD-dependent deacety 42.9 1.9E+02 0.004 23.7 9.5 79 29-109 154-239 (244)
284 cd01409 SIRT4 SIRT4: Eukaryoti 42.8 1.1E+02 0.0024 25.3 6.7 55 30-84 181-242 (260)
285 PRK12480 D-lactate dehydrogena 42.7 1.2E+02 0.0026 26.1 7.1 81 4-86 146-240 (330)
286 PRK00124 hypothetical protein; 42.7 60 0.0013 24.7 4.7 88 6-95 2-90 (151)
287 COG0673 MviM Predicted dehydro 41.5 1.1E+02 0.0025 25.6 6.9 38 40-78 56-96 (342)
288 PF03949 Malic_M: Malic enzyme 40.7 1.5E+02 0.0033 24.6 7.1 78 3-80 24-140 (255)
289 cd01410 SIRT7 SIRT7: Eukaryoti 40.6 1.4E+02 0.0029 23.8 6.7 55 28-82 130-191 (206)
290 PRK08374 homoserine dehydrogen 40.5 1.4E+02 0.003 25.7 7.3 44 42-85 82-127 (336)
291 PRK08223 hypothetical protein; 40.3 1.4E+02 0.0031 25.2 7.1 68 17-84 84-155 (287)
292 PF10727 Rossmann-like: Rossma 40.3 43 0.00093 24.5 3.5 67 2-71 8-89 (127)
293 TIGR02990 ectoine_eutA ectoine 40.3 67 0.0015 26.3 5.0 47 35-82 162-215 (239)
294 cd01967 Nitrogenase_MoFe_alpha 40.1 1.1E+02 0.0024 26.8 6.7 92 6-113 162-258 (406)
295 COG1879 RbsB ABC-type sugar tr 40.1 1.1E+02 0.0023 25.6 6.5 70 17-86 53-129 (322)
296 PF01012 ETF: Electron transfe 40.0 1.4E+02 0.003 22.4 6.5 74 4-78 34-119 (164)
297 TIGR01327 PGDH D-3-phosphoglyc 40.0 2.2E+02 0.0047 26.2 8.8 81 4-86 138-235 (525)
298 PF14851 FAM176: FAM176 family 39.4 1.3E+02 0.0027 23.0 6.0 44 135-183 4-47 (153)
299 PRK13303 L-aspartate dehydroge 38.8 99 0.0021 25.6 5.9 37 48-84 60-96 (265)
300 PF00899 ThiF: ThiF family; I 38.7 1.3E+02 0.0027 21.8 5.9 69 16-84 58-128 (135)
301 PLN03139 formate dehydrogenase 38.7 1.9E+02 0.0042 25.5 7.9 81 4-86 199-297 (386)
302 TIGR00730 conserved hypothetic 38.1 1.9E+02 0.0041 22.4 7.2 73 34-109 82-177 (178)
303 PRK08883 ribulose-phosphate 3- 37.9 2.1E+02 0.0046 23.0 8.0 48 17-64 96-143 (220)
304 PRK13581 D-3-phosphoglycerate 37.7 2.4E+02 0.0052 26.0 8.7 81 4-86 140-236 (526)
305 cd05566 PTS_IIB_galactitol PTS 37.7 1.2E+02 0.0025 20.2 5.2 51 7-60 4-59 (89)
306 PRK14619 NAD(P)H-dependent gly 37.7 2.1E+02 0.0046 24.0 7.9 55 4-60 4-58 (308)
307 COG2327 WcaK Polysaccharide py 37.5 2.9E+02 0.0064 24.4 10.1 98 12-114 248-351 (385)
308 cd01492 Aos1_SUMO Ubiquitin ac 37.5 1.7E+02 0.0038 22.9 6.9 71 17-88 78-150 (197)
309 PF07643 DUF1598: Protein of u 37.4 87 0.0019 21.3 4.3 36 16-52 30-65 (84)
310 TIGR00322 diphth2_R diphthamid 37.3 46 0.001 28.7 3.8 59 17-79 252-310 (332)
311 PRK11199 tyrA bifunctional cho 37.3 1.7E+02 0.0036 25.6 7.3 50 5-56 99-149 (374)
312 TIGR01278 DPOR_BchB light-inde 37.0 91 0.002 28.6 5.8 70 6-78 160-238 (511)
313 TIGR03336 IOR_alpha indolepyru 36.3 3.4E+02 0.0074 25.4 9.6 101 4-110 230-335 (595)
314 KOG2741 Dimeric dihydrodiol de 36.2 1.6E+02 0.0035 25.6 6.8 59 14-78 41-101 (351)
315 PRK14852 hypothetical protein; 36.2 2.2E+02 0.0049 28.5 8.5 70 17-86 389-462 (989)
316 KOG0832 Mitochondrial/chloropl 35.7 1.1E+02 0.0024 25.1 5.3 37 51-88 175-212 (251)
317 TIGR02355 moeB molybdopterin s 35.5 2.2E+02 0.0047 23.2 7.3 68 17-84 81-150 (240)
318 PRK09622 porA pyruvate flavodo 35.4 3E+02 0.0065 24.4 8.7 101 3-112 266-382 (407)
319 PF01408 GFO_IDH_MocA: Oxidore 35.4 1.5E+02 0.0033 20.5 8.4 39 42-80 53-93 (120)
320 PRK06019 phosphoribosylaminoim 35.4 2.4E+02 0.0052 24.4 8.1 61 6-70 4-82 (372)
321 TIGR00715 precor6x_red precorr 34.8 2.6E+02 0.0057 23.1 8.4 84 22-111 166-255 (256)
322 PRK04207 glyceraldehyde-3-phos 34.8 2E+02 0.0044 24.7 7.4 39 42-80 71-109 (341)
323 TIGR02322 phosphon_PhnN phosph 34.7 2E+02 0.0043 21.7 10.3 102 7-108 4-129 (179)
324 TIGR03693 ocin_ThiF_like putat 34.3 1.8E+02 0.0038 27.5 7.1 65 18-82 173-243 (637)
325 PF13689 DUF4154: Domain of un 34.2 1.9E+02 0.0041 21.3 7.0 68 3-77 26-95 (145)
326 COG2984 ABC-type uncharacteriz 34.0 85 0.0018 27.0 4.7 64 17-82 178-248 (322)
327 PRK05690 molybdopterin biosynt 33.8 2.6E+02 0.0057 22.8 7.7 68 18-85 90-159 (245)
328 TIGR01319 glmL_fam conserved h 33.6 1.4E+02 0.0029 27.2 6.1 52 2-53 120-176 (463)
329 cd05014 SIS_Kpsf KpsF-like pro 33.5 1.6E+02 0.0035 20.7 5.7 73 6-80 2-81 (128)
330 cd01425 RPS2 Ribosomal protein 33.4 2.4E+02 0.0051 22.1 7.3 30 49-79 127-156 (193)
331 PF01488 Shikimate_DH: Shikima 33.3 1.1E+02 0.0025 22.2 4.9 66 17-87 47-114 (135)
332 COG1634 Uncharacterized Rossma 33.3 2.5E+02 0.0054 23.0 7.0 75 6-90 54-131 (232)
333 COG1830 FbaB DhnA-type fructos 33.0 70 0.0015 26.7 4.0 61 50-113 180-259 (265)
334 PRK13845 putative glycerol-3-p 32.8 60 0.0013 29.1 3.8 69 1-71 273-343 (437)
335 cd01020 TroA_b Metal binding p 32.6 2.8E+02 0.0061 22.7 10.6 75 39-114 42-118 (264)
336 PRK04020 rps2P 30S ribosomal p 32.4 2.6E+02 0.0057 22.3 7.7 25 63-87 127-152 (204)
337 TIGR00243 Dxr 1-deoxy-D-xylulo 32.4 2.6E+02 0.0056 24.8 7.5 75 5-80 28-124 (389)
338 COG0281 SfcA Malic enzyme [Ene 32.3 3.8E+02 0.0082 24.1 9.2 87 2-89 197-308 (432)
339 PF02302 PTS_IIB: PTS system, 31.9 1.5E+02 0.0033 19.5 6.8 52 7-61 3-59 (90)
340 COG1519 KdtA 3-deoxy-D-manno-o 31.9 3.1E+02 0.0067 24.6 8.0 77 2-81 76-154 (419)
341 KOG2648 Diphthamide biosynthes 31.6 82 0.0018 28.3 4.4 58 17-78 286-343 (453)
342 COG1618 Predicted nucleotide k 31.3 2E+02 0.0043 22.5 5.9 72 42-113 93-177 (179)
343 PF02670 DXP_reductoisom: 1-de 31.3 2.1E+02 0.0046 21.0 6.8 43 4-47 24-66 (129)
344 PTZ00187 succinyl-CoA syntheta 31.1 2.8E+02 0.0061 23.8 7.5 12 72-83 139-150 (317)
345 COG1887 TagB Putative glycosyl 31.1 1.6E+02 0.0035 26.0 6.2 71 40-115 277-355 (388)
346 PRK10637 cysG siroheme synthas 30.6 4E+02 0.0087 23.9 12.3 84 4-90 12-114 (457)
347 PLN02819 lysine-ketoglutarate 30.6 3.1E+02 0.0068 27.7 8.6 43 38-80 637-679 (1042)
348 cd06295 PBP1_CelR Ligand bindi 30.5 2.8E+02 0.0061 22.1 10.1 65 17-82 30-96 (275)
349 PTZ00075 Adenosylhomocysteinas 30.4 3.3E+02 0.0072 24.9 8.1 77 4-82 254-343 (476)
350 PF14359 DUF4406: Domain of un 30.3 97 0.0021 21.3 3.8 33 45-77 55-90 (92)
351 PRK13125 trpA tryptophan synth 30.0 97 0.0021 25.2 4.4 47 17-63 119-165 (244)
352 cd00757 ThiF_MoeB_HesA_family 30.0 2.8E+02 0.0062 22.1 7.2 68 17-84 78-147 (228)
353 PLN02696 1-deoxy-D-xylulose-5- 30.0 3.6E+02 0.0077 24.5 8.2 40 41-80 139-180 (454)
354 cd01078 NAD_bind_H4MPT_DH NADP 30.0 2.6E+02 0.0056 21.5 7.7 25 38-62 86-110 (194)
355 TIGR00561 pntA NAD(P) transhyd 29.4 4.6E+02 0.0099 24.2 9.4 49 43-91 241-297 (511)
356 PLN03129 NADP-dependent malic 29.4 4.1E+02 0.0089 25.0 8.6 37 42-78 392-433 (581)
357 PRK14350 ligA NAD-dependent DN 29.3 2.1E+02 0.0045 27.4 6.9 59 5-78 597-657 (669)
358 COG0289 DapB Dihydrodipicolina 29.3 2.2E+02 0.0048 23.8 6.3 81 4-87 2-107 (266)
359 PF09949 DUF2183: Uncharacteri 28.8 1.2E+02 0.0026 21.2 4.1 25 2-26 62-88 (100)
360 TIGR00236 wecB UDP-N-acetylglu 28.7 3.6E+02 0.0079 22.9 8.3 77 3-80 27-117 (365)
361 cd04795 SIS SIS domain. SIS (S 28.5 1.1E+02 0.0023 19.8 3.8 69 8-78 2-79 (87)
362 cd01574 PBP1_LacI Ligand-bindi 28.5 3E+02 0.0064 21.7 10.1 65 17-82 19-88 (264)
363 PRK10310 PTS system galactitol 28.4 1.5E+02 0.0032 20.3 4.5 49 7-58 6-59 (94)
364 COG0062 Uncharacterized conser 28.4 3.1E+02 0.0067 21.9 7.0 36 47-82 117-160 (203)
365 TIGR02356 adenyl_thiF thiazole 28.3 2.9E+02 0.0064 21.6 7.5 67 18-84 79-147 (202)
366 PRK10834 vancomycin high tempe 28.2 2E+02 0.0042 23.7 5.8 78 3-80 81-168 (239)
367 COG0036 Rpe Pentose-5-phosphat 28.1 1.8E+02 0.0039 23.6 5.4 51 13-63 95-145 (220)
368 cd01981 Pchlide_reductase_B Pc 28.0 2.3E+02 0.0049 25.2 6.8 71 6-79 164-243 (430)
369 PLN02494 adenosylhomocysteinas 27.9 3.8E+02 0.0083 24.5 8.1 74 4-79 254-340 (477)
370 PF05686 Glyco_transf_90: Glyc 27.8 1E+02 0.0022 27.3 4.4 84 62-145 226-317 (395)
371 PF01866 Diphthamide_syn: Puta 27.8 58 0.0013 27.6 2.8 59 17-79 229-287 (307)
372 PF07085 DRTGG: DRTGG domain; 27.7 1.6E+02 0.0036 20.2 4.8 51 30-82 41-94 (105)
373 TIGR01283 nifE nitrogenase mol 27.6 1.5E+02 0.0033 26.6 5.6 70 6-78 199-273 (456)
374 TIGR01921 DAP-DH diaminopimela 27.6 3.3E+02 0.0071 23.5 7.3 74 4-80 3-91 (324)
375 PLN02225 1-deoxy-D-xylulose-5- 27.5 1.9E+02 0.0041 27.8 6.3 105 6-112 569-691 (701)
376 PF05014 Nuc_deoxyrib_tr: Nucl 27.4 84 0.0018 22.0 3.2 39 44-82 56-98 (113)
377 PRK00945 acetyl-CoA decarbonyl 27.4 3E+02 0.0064 21.4 10.0 105 7-113 38-170 (171)
378 PRK02910 light-independent pro 27.3 1.6E+02 0.0036 27.0 5.8 71 6-79 160-239 (519)
379 COG4370 Uncharacterized protei 27.3 91 0.002 26.9 3.8 85 39-128 301-396 (412)
380 PRK14851 hypothetical protein; 26.9 4.2E+02 0.0091 25.4 8.5 67 17-83 100-170 (679)
381 TIGR01161 purK phosphoribosyla 26.9 3.2E+02 0.007 23.3 7.4 22 7-28 2-23 (352)
382 cd00316 Oxidoreductase_nitroge 26.7 1.9E+02 0.004 25.1 5.9 72 6-80 154-231 (399)
383 PRK12464 1-deoxy-D-xylulose 5- 26.6 3.2E+02 0.0069 24.2 7.1 75 5-80 23-117 (383)
384 PRK10017 colanic acid biosynth 26.1 3.5E+02 0.0075 24.2 7.5 41 41-81 109-156 (426)
385 TIGR01361 DAHP_synth_Bsub phos 25.9 3.4E+02 0.0074 22.4 7.0 78 18-113 80-158 (260)
386 PRK08762 molybdopterin biosynt 25.9 2.9E+02 0.0062 24.1 6.9 69 17-85 192-262 (376)
387 PF02571 CbiJ: Precorrin-6x re 25.9 3.3E+02 0.0071 22.4 6.8 54 32-85 175-231 (249)
388 PF04577 DUF563: Protein of un 25.4 2.8E+02 0.0061 21.2 6.3 39 17-57 122-160 (206)
389 COG2085 Predicted dinucleotide 25.4 3.6E+02 0.0079 21.7 7.4 104 6-113 3-124 (211)
390 cd07197 nitrilase Nitrilase su 25.3 3.4E+02 0.0074 21.4 7.7 51 48-98 158-215 (253)
391 cd01485 E1-1_like Ubiquitin ac 25.1 3.4E+02 0.0073 21.3 7.0 69 18-86 79-151 (198)
392 COG0158 Fbp Fructose-1,6-bisph 25.1 2E+02 0.0044 24.6 5.4 44 32-76 233-287 (326)
393 PRK06546 pyruvate dehydrogenas 25.1 5.1E+02 0.011 24.0 8.7 101 7-113 205-324 (578)
394 TIGR03646 YtoQ_fam YtoQ family 25.0 1.2E+02 0.0027 22.5 3.7 103 6-111 2-143 (144)
395 cd05311 NAD_bind_2_malic_enz N 24.8 3.7E+02 0.008 21.6 9.0 75 3-78 24-125 (226)
396 PRK06111 acetyl-CoA carboxylas 24.8 4.9E+02 0.011 23.0 8.5 23 6-28 4-26 (450)
397 cd07579 nitrilase_1_R2 Second 24.7 2.7E+02 0.0057 23.1 6.2 38 47-84 150-212 (279)
398 PLN02582 1-deoxy-D-xylulose-5- 24.6 3.7E+02 0.008 25.8 7.7 107 6-112 545-667 (677)
399 COG2893 ManX Phosphotransferas 24.5 1.1E+02 0.0023 23.0 3.4 41 5-45 2-43 (143)
400 PRK06843 inosine 5-monophospha 24.3 1.8E+02 0.0038 26.0 5.2 63 51-113 14-90 (404)
401 PRK07878 molybdopterin biosynt 24.3 3.9E+02 0.0084 23.5 7.5 70 17-86 99-170 (392)
402 TIGR00486 YbgI_SA1388 dinuclea 24.2 4E+02 0.0086 21.7 7.3 26 50-78 189-214 (249)
403 cd01982 Chlide_reductase_Z Chl 24.2 2.4E+02 0.0051 25.2 6.0 71 6-81 157-234 (412)
404 PF14737 DUF4470: Domain of un 24.1 1.7E+02 0.0037 20.1 4.3 27 3-29 23-49 (100)
405 PRK06270 homoserine dehydrogen 24.1 3.4E+02 0.0074 23.3 7.0 42 42-83 80-128 (341)
406 cd01971 Nitrogenase_VnfN_like 24.1 3.7E+02 0.0081 23.8 7.4 83 15-113 174-260 (427)
407 PF00391 PEP-utilizers: PEP-ut 24.1 2.2E+02 0.0047 18.7 6.6 65 30-96 11-75 (80)
408 PRK10840 transcriptional regul 24.0 3.4E+02 0.0074 20.9 11.6 109 3-114 2-127 (216)
409 PRK07688 thiamine/molybdopteri 24.0 3.5E+02 0.0076 23.3 7.0 64 18-81 84-149 (339)
410 COG1671 Uncharacterized protei 23.6 1.5E+02 0.0033 22.4 4.0 85 7-95 4-89 (150)
411 PF01118 Semialdhyde_dh: Semia 23.6 2.6E+02 0.0057 19.7 5.3 32 47-78 64-95 (121)
412 CHL00099 ilvB acetohydroxyacid 23.5 5.6E+02 0.012 23.8 8.7 105 7-113 221-348 (585)
413 PRK05476 S-adenosyl-L-homocyst 23.4 4E+02 0.0086 23.9 7.3 74 3-78 211-297 (425)
414 cd07575 Xc-1258_like Xanthomon 23.4 2.9E+02 0.0064 22.2 6.2 45 41-85 146-196 (252)
415 PF01936 NYN: NYN domain; Int 23.2 2.2E+02 0.0047 20.4 4.9 48 4-55 97-144 (146)
416 PRK08057 cobalt-precorrin-6x r 23.2 4.3E+02 0.0092 21.7 7.2 75 31-111 170-247 (248)
417 PRK07119 2-ketoisovalerate fer 23.1 5E+02 0.011 22.5 9.3 58 3-60 245-308 (352)
418 cd07586 nitrilase_8 Uncharacte 23.1 4.1E+02 0.0088 21.5 7.2 39 46-84 156-207 (269)
419 TIGR01851 argC_other N-acetyl- 23.0 3.1E+02 0.0066 23.5 6.3 106 6-112 3-129 (310)
420 cd01750 GATase1_CobQ Type 1 gl 23.0 3.3E+02 0.0071 21.2 6.2 66 7-80 3-79 (194)
421 COG0327 Uncharacterized conser 22.8 3.4E+02 0.0073 22.3 6.4 68 8-80 173-245 (250)
422 PRK00286 xseA exodeoxyribonucl 22.8 5.5E+02 0.012 22.8 9.2 62 9-70 100-185 (438)
423 PF03575 Peptidase_S51: Peptid 22.7 1.9E+02 0.0042 21.5 4.6 65 17-83 3-79 (154)
424 cd06312 PBP1_ABC_sugar_binding 22.6 4E+02 0.0086 21.2 10.5 92 17-111 20-119 (271)
425 PRK14192 bifunctional 5,10-met 22.6 2.8E+02 0.006 23.3 5.9 69 4-77 159-228 (283)
426 TIGR01012 Sa_S2_E_A ribosomal 22.5 3.5E+02 0.0075 21.5 6.1 38 49-87 108-146 (196)
427 PRK13397 3-deoxy-7-phosphohept 22.5 4.5E+02 0.0097 21.8 7.1 79 17-113 69-148 (250)
428 COG1701 Uncharacterized protei 22.4 4.3E+02 0.0093 21.5 8.4 90 48-144 152-243 (256)
429 PRK08818 prephenate dehydrogen 22.1 4.5E+02 0.0098 23.1 7.3 53 4-57 4-59 (370)
430 PF04392 ABC_sub_bind: ABC tra 21.8 1.8E+02 0.004 24.1 4.8 90 17-112 150-250 (294)
431 PRK08306 dipicolinate synthase 21.8 4.7E+02 0.01 21.9 7.3 72 5-78 3-99 (296)
432 TIGR03394 indol_phenyl_DC indo 21.5 2.1E+02 0.0046 26.2 5.5 49 7-55 205-274 (535)
433 cd05710 SIS_1 A subgroup of th 21.3 94 0.002 22.1 2.5 69 6-78 1-79 (120)
434 PRK15424 propionate catabolism 21.2 5.6E+02 0.012 23.8 8.0 86 27-113 105-195 (538)
435 cd06268 PBP1_ABC_transporter_L 21.1 4.2E+02 0.0091 20.9 7.2 39 44-82 60-99 (298)
436 CHL00076 chlB photochlorophyll 21.1 4.3E+02 0.0093 24.3 7.3 62 15-79 181-244 (513)
437 PRK05583 ribosomal protein L7A 21.0 3E+02 0.0066 19.2 6.2 63 4-70 33-98 (104)
438 PRK13846 putative glycerol-3-p 21.0 1E+02 0.0022 26.5 3.0 70 1-72 174-245 (316)
439 PF02504 FA_synthesis: Fatty a 20.9 29 0.00063 29.8 -0.3 68 2-71 172-241 (323)
440 PF11784 DUF3320: Protein of u 20.9 2.1E+02 0.0045 17.3 3.8 42 99-140 9-50 (52)
441 cd07572 nit Nit1, Nit 2, and r 20.8 4.5E+02 0.0097 21.1 7.5 54 48-101 168-230 (265)
442 PRK01368 murD UDP-N-acetylmura 20.7 5.1E+02 0.011 23.3 7.6 74 2-78 4-92 (454)
443 COG0026 PurK Phosphoribosylami 20.7 4.9E+02 0.011 22.9 7.1 64 6-73 3-84 (375)
444 PRK01231 ppnK inorganic polyph 20.7 4.5E+02 0.0098 22.2 6.9 34 71-113 84-118 (295)
445 PRK07979 acetolactate synthase 20.6 2.3E+02 0.005 26.2 5.5 49 7-55 210-278 (574)
446 TIGR03855 NAD_NadX aspartate d 20.6 4.6E+02 0.01 21.2 7.1 71 5-85 2-73 (229)
447 cd05017 SIS_PGI_PMI_1 The memb 20.5 2.4E+02 0.0052 19.8 4.6 79 6-88 1-86 (119)
448 PRK08057 cobalt-precorrin-6x r 20.5 4.9E+02 0.011 21.4 9.9 76 33-110 46-127 (248)
449 PLN02929 NADH kinase 20.4 2.8E+02 0.0061 23.6 5.5 66 44-113 59-137 (301)
450 PRK13761 hypothetical protein; 20.2 4.9E+02 0.011 21.3 8.7 93 47-146 148-242 (248)
451 COG1736 DPH2 Diphthamide synth 20.1 2E+02 0.0044 25.0 4.7 60 17-80 257-316 (347)
452 cd01965 Nitrogenase_MoFe_beta_ 20.1 5.9E+02 0.013 22.5 7.9 63 15-80 170-252 (428)
No 1
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=6.2e-42 Score=283.92 Aligned_cols=200 Identities=58% Similarity=0.912 Sum_probs=189.6
Q ss_pred CCCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 1 MRVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 1 ~~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
++|+++|+|+||||++..++++.+++.++++|.++|.+++++++++|.+.|+|++||.+|+||++++|||+||+|||+|+
T Consensus 223 ~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTr 302 (426)
T KOG1111|consen 223 KHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTR 302 (426)
T ss_pred cCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEee
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCceEEeCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCccHHHHHHh
Q 027511 81 VGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVYDRALECPNQNLVERLSR 160 (222)
Q Consensus 81 ~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (222)
+||++|+++++...+..++++++++++++++...+.. ..+.++++++.|+|++++++++++|.++......+..+++..
T Consensus 303 VGGIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~~~~-p~~~h~~v~~~y~w~dVa~rTekvy~r~~~t~~~~~~~r~~~ 381 (426)
T KOG1111|consen 303 VGGIPEVLPEDMITLGEPGPDDLVGAVEKAITKLRTL-PLEFHDRVKKMYSWKDVAERTEKVYDRAATTSIRNEQDRLKI 381 (426)
T ss_pred cCCccccCCccceeccCCChHHHHHHHHHHHHHhccC-chhHHHHHHHhccHHHHHHHHHHHHHHHhhccCcCHHHHHHH
Confidence 9999999999966678889999999999999886522 578899999999999999999999999999999999999998
Q ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCC
Q 027511 161 YLSCGAWAGKLFCLVMIIDYLLWRFLELWKPAEDIEEVPDIV 202 (222)
Q Consensus 161 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 202 (222)
++..|.+ |+++.++..+.|++++.++|++|+.+++++||+.
T Consensus 382 ~~~~g~~-g~~~~v~~~i~~ll~~Ll~l~~p~~~v~~a~~~~ 422 (426)
T KOG1111|consen 382 WLYRGVG-GKLFHVLGPINYLLKRLLELPEPRGNVEIAPDVQ 422 (426)
T ss_pred HhhccCC-ceEEEEehHHHHHHHHHhcccCcccccccCcccc
Confidence 8888776 8899999999999999999999999999999993
No 2
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.8e-32 Score=239.69 Aligned_cols=174 Identities=69% Similarity=1.145 Sum_probs=163.5
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.|+++|+|+|+|+..+.++++++++++.++|.|+|+++++++..+|+.+|++++||..|+||++++|||+||+|||+++.
T Consensus 222 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~ 301 (398)
T cd03796 222 HPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRV 301 (398)
T ss_pred CCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCccHHHHHH
Q 027511 82 GGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALECPNQNLVERLS 159 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (222)
||.+|++.++..++..+|+++++++|.+++++.. ..+..++++++.+.|||+.+++++.++|+++++.+.....+++.
T Consensus 302 gg~~e~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~~~~~~~~~~~ 381 (398)
T cd03796 302 GGIPEVLPPDMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQTPNLSLLERLK 381 (398)
T ss_pred CCchhheeCCceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCcchHHhhh
Confidence 9999999988777888899999999999998755 34678888999999999999999999999999888888899999
Q ss_pred hHhhcCchHHHHHHHH
Q 027511 160 RYLSCGAWAGKLFCLV 175 (222)
Q Consensus 160 ~~~~~g~~~~~~~~~~ 175 (222)
+||+||+++|++|+++
T Consensus 382 ~~~~~~~~~~~~~~~~ 397 (398)
T cd03796 382 RYYSCGPIAGKIFCLL 397 (398)
T ss_pred hhcccCcccceeEEee
Confidence 9999999999998875
No 3
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.95 E-value=2.2e-27 Score=208.47 Aligned_cols=144 Identities=26% Similarity=0.347 Sum_probs=134.9
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCC------ccccHHHHHHHHhCCc
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLT------EAFCIAILEAASCGLL 75 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~------E~~g~~ilEAma~G~P 75 (222)
.|+++++|+|+|+.+++++++++++++.++|.|+|+++++++.++|+.||++|+||.. |+||++++|||+||+|
T Consensus 251 ~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~P 330 (406)
T PRK15427 251 GVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIP 330 (406)
T ss_pred CCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCC
Confidence 5789999999999999999999999999999999999999999999999999999984 9999999999999999
Q ss_pred EEEeCCCCccccccCCceEEeCC--CHHHHHHHHHHHHh-cCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 76 TVSTRVGGVPEVLPDDMVVLAEP--DPGDMVLAIRKAIS-LLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 76 vVa~~~gg~~e~i~~~~~g~~~~--~~~~la~~i~~ll~-~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
||+|+.||.+|++.++.+|+..+ |+++++++|.++++ +++ ..++.++++++.++|+|+.+++++.++|++
T Consensus 331 VI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 331 VVSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred EEEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999999998875443 89999999999999 776 678999999999999999999999999975
No 4
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.93 E-value=1.1e-25 Score=194.67 Aligned_cols=142 Identities=24% Similarity=0.349 Sum_probs=130.7
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
|+++|+++|+|+.++++++.++++++.++|.|+|. .+++..+|+++|++|+||..|+||++++|||+||+|||+++.|
T Consensus 228 ~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~ 305 (374)
T TIGR03088 228 ERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGE--RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVG 305 (374)
T ss_pred cceEEEEecCCchHHHHHHHHHHcCCcceEEEcCC--cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCC
Confidence 47999999999999999999999999999999996 5789999999999999999999999999999999999999999
Q ss_pred CccccccCCceEEeC--CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 027511 83 GVPEVLPDDMVVLAE--PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRA 146 (222)
Q Consensus 83 g~~e~i~~~~~g~~~--~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 146 (222)
|.+|++.++.+|+.. .|+++++++|.+++++++ ..++.++++.+.++|+|+.+++++.++|+++
T Consensus 306 g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 306 GNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQL 373 (374)
T ss_pred CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 999999998776543 389999999999998866 5677888999999999999999999999876
No 5
>PLN02949 transferase, transferring glycosyl groups
Probab=99.93 E-value=2.7e-25 Score=197.63 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=130.2
Q ss_pred CCceEEEEEcCCcc------HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCc
Q 027511 2 RVKVRFIVGGDGPK------RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLL 75 (222)
Q Consensus 2 ~p~~~lvi~G~g~~------~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~P 75 (222)
.|+++|+|+|+++. .+++++++++++++++|.|+|+++.+++..+|++|+++++||..|+||++++|||+||+|
T Consensus 301 ~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~P 380 (463)
T PLN02949 301 VPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAV 380 (463)
T ss_pred CCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCc
Confidence 47899999998742 257888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcc-ccccC---CceEEeCCCHHHHHHHHHHHHhcC-C--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 76 TVSTRVGGVP-EVLPD---DMVVLAEPDPGDMVLAIRKAISLL-P--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 76 vVa~~~gg~~-e~i~~---~~~g~~~~~~~~la~~i~~ll~~~-~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
||+++.||+. |++.+ +.+|+..+|+++++++|.++++++ + ..++.++++++ ++|||+.+.+++.+.|+++++
T Consensus 381 VIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 381 PIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAAARKRA-NRFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred EEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHh
Confidence 9999999975 67665 557888889999999999999853 3 56788888888 569999999999999998876
Q ss_pred C
Q 027511 149 C 149 (222)
Q Consensus 149 ~ 149 (222)
+
T Consensus 460 ~ 460 (463)
T PLN02949 460 S 460 (463)
T ss_pred h
Confidence 4
No 6
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.93 E-value=2e-25 Score=198.69 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=125.5
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.|+++|+|+|+|+.+++++++++++++.++|.|+|+ .+++..+|+.+|+||+||.+|+||++++|||+||+|||+++.
T Consensus 427 ~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~--~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdv 504 (578)
T PRK15490 427 HPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGA--SRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPA 504 (578)
T ss_pred CCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCC--hhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCC
Confidence 589999999999999999999999999999999999 478999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCC--CHHHHHHHHH---HHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLAEP--DPGDMVLAIR---KAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~--~~~~la~~i~---~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
||.+|++.++.+|+..+ |++++++++. .+.+... ..++.++++++.++|||+.++++|.++|.+
T Consensus 505 GG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 505 GGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred CCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 99999999998887644 6677777663 3333333 346788999999999999999999999975
No 7
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.93 E-value=5.8e-25 Score=191.51 Aligned_cols=144 Identities=20% Similarity=0.358 Sum_probs=126.4
Q ss_pred CCceEEEEEcCCccH---------HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC-CccccHHHHHHHH
Q 027511 2 RVKVRFIVGGDGPKR---------VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL-TEAFCIAILEAAS 71 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~---------~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~-~E~~g~~ilEAma 71 (222)
+|+++|+|+|+|+.. +++++++++++ ++|.|+|+++.+++..+|+.||++|+||. .|+||++++|||+
T Consensus 222 ~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 222 HSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHH
Confidence 689999999987532 24555555554 57999999999999999999999999997 5999999999999
Q ss_pred hCCcEEEeCCCCccccccCCceEE-e-CC-CHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 027511 72 CGLLTVSTRVGGVPEVLPDDMVVL-A-EP-DPGDMVLAIRKAISLLP-KIDPQVMHERMKKLYNWHDVAKRTEIVYDRAL 147 (222)
Q Consensus 72 ~G~PvVa~~~gg~~e~i~~~~~g~-~-~~-~~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 147 (222)
||+|||+++.||.+|++.++.+|+ . .+ |+++++++|.+++++++ ..++.++++.+.++|+|+.++++++++|++..
T Consensus 300 ~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 300 AGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred cCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998875 3 33 89999999999999877 66888899999999999999999999998754
No 8
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.92 E-value=1.6e-24 Score=189.49 Aligned_cols=146 Identities=26% Similarity=0.362 Sum_probs=129.8
Q ss_pred CCc--eEEEEEcC----C-ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCC
Q 027511 2 RVK--VRFIVGGD----G-PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGL 74 (222)
Q Consensus 2 ~p~--~~lvi~G~----g-~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~ 74 (222)
+|+ ++|+|+|+ | +..++++++++++++.++|.|+|+++++++..+|+.||++++||..|+||++++|||++|+
T Consensus 248 ~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~ 327 (405)
T TIGR03449 248 DPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGT 327 (405)
T ss_pred CCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC
Confidence 355 89999995 4 5567899999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCccccccCCceEEeCC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 75 LTVSTRVGGVPEVLPDDMVVLAEP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 75 PvVa~~~gg~~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
|||+++.||.+|++.++.+|+..+ |+++++++|.+++++++ ..++.++++.+ ++|||+.+++++.++|.+++.
T Consensus 328 Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~-~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 328 PVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHA-AGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred CEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999988776543 89999999999998866 55666777665 679999999999999998763
No 9
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.92 E-value=9.8e-25 Score=194.70 Aligned_cols=144 Identities=22% Similarity=0.360 Sum_probs=128.9
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.|+++|+|+|+|+.+++++++++. .+|.|+|+++++++..+|+.||++|+||..|+||++++|||+||+|||+++.
T Consensus 288 ~~~~~l~ivG~G~~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~ 363 (465)
T PLN02871 288 LPGARLAFVGDGPYREELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARA 363 (465)
T ss_pred CCCcEEEEEeCChHHHHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCC
Confidence 478999999999999888888764 3699999999999999999999999999999999999999999999999999
Q ss_pred CCccccccC---CceEEeC--CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHH-HHHHHhcCC
Q 027511 82 GGVPEVLPD---DMVVLAE--PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEI-VYDRALECP 150 (222)
Q Consensus 82 gg~~e~i~~---~~~g~~~--~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~-~~~~~~~~~ 150 (222)
||..|++.+ +.+|+.. .|+++++++|.++++++. ..++.++++.+ +.|+|+.+++++.+ +|+.++...
T Consensus 364 gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~-~~fsw~~~a~~l~~~~Y~~~~~~~ 439 (465)
T PLN02871 364 GGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEV-EKWDWRAATRKLRNEQYSAAIWFW 439 (465)
T ss_pred CCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 7777653 389999999999999876 56777888776 57999999999998 799988753
No 10
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.92 E-value=2e-24 Score=199.01 Aligned_cols=141 Identities=22% Similarity=0.280 Sum_probs=128.5
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+|+++|+|+|+|+.++.++++++++++.++|.|+|+. +++..+|+.+|++|+||.+|+||++++|||+||+|||+|+.
T Consensus 546 ~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~--~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~ 623 (694)
T PRK15179 546 HPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLS--RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLA 623 (694)
T ss_pred CcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCc--chHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECC
Confidence 6899999999999999999999999999999999996 57999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCC--C--HHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLAEP--D--PGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~--~--~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
||++|++.++.+|+..+ | +++++++|.+++.+.. ..+..++++++.++|||+.+++++.++|+
T Consensus 624 gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 624 GGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred CChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999998886544 4 4689999999887654 45677888899999999999999999995
No 11
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.92 E-value=1.7e-24 Score=191.84 Aligned_cols=136 Identities=23% Similarity=0.295 Sum_probs=120.8
Q ss_pred EEEcCCccHH-----------HHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhc----cEEEEcCCCccccHHHHHHHHh
Q 027511 8 IVGGDGPKRV-----------RLEEMREKHSLQDRVEMLGAVPHAQVRSVLISG----HIFLNSSLTEAFCIAILEAASC 72 (222)
Q Consensus 8 vi~G~g~~~~-----------~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~a----dv~v~~s~~E~~g~~ilEAma~ 72 (222)
+|+|+|+... .+.++++++++.++|.|+|+++.+++..+|+.| |+||+||..|+||++++|||||
T Consensus 284 li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~ 363 (439)
T TIGR02472 284 LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAAC 363 (439)
T ss_pred EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHh
Confidence 3678876532 245567888999999999999999999999987 9999999999999999999999
Q ss_pred CCcEEEeCCCCccccccCCceEEeC--CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027511 73 GLLTVSTRVGGVPEVLPDDMVVLAE--PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVY 143 (222)
Q Consensus 73 G~PvVa~~~gg~~e~i~~~~~g~~~--~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 143 (222)
|+|||+|+.||++|++.++.+|+.. .|+++++++|.++++++. ..++.++++++.++|||+.+++++.+++
T Consensus 364 G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 364 GLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999998777643 389999999999999876 6788999999999999999999999876
No 12
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.92 E-value=1.9e-24 Score=193.89 Aligned_cols=140 Identities=16% Similarity=0.241 Sum_probs=124.1
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.|+++|+|+|+|+..+.++++++++++.++|.|+|.. ++..+++.||++|+||..|+||++++||||||+|||++++
T Consensus 348 ~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv 424 (500)
T TIGR02918 348 VPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDV 424 (500)
T ss_pred CCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecC
Confidence 6899999999999999999999999999999999974 6889999999999999999999999999999999999998
Q ss_pred C-CccccccCCceEEeCC------C----HHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 82 G-GVPEVLPDDMVVLAEP------D----PGDMVLAIRKAISLLP-KIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 82 g-g~~e~i~~~~~g~~~~------~----~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
+ |.+|++.++.+|+..+ | +++++++|.+++++.. ..++.++++. .+.|||+.+++++.+++++
T Consensus 425 ~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~-a~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 425 NYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNSNDIDAFHEYSYQI-AEGFLTANIIEKWKKLVRE 499 (500)
T ss_pred CCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhChHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhh
Confidence 6 8999999998886543 2 7889999999995333 5667777764 5779999999999999875
No 13
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.92 E-value=3.2e-24 Score=184.31 Aligned_cols=140 Identities=29% Similarity=0.452 Sum_probs=128.6
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC------CccccHHHHHHHHhCCc
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL------TEAFCIAILEAASCGLL 75 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~------~E~~g~~ilEAma~G~P 75 (222)
.|+++|+|+|+|+..++++++++++++.++|.|+|.++++++..+|+.+|++++||. .|+||++++|||+||+|
T Consensus 217 ~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~P 296 (367)
T cd05844 217 VPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVP 296 (367)
T ss_pred CCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCC
Confidence 579999999999988999999999999999999999999999999999999999997 59999999999999999
Q ss_pred EEEeCCCCccccccCCceEEeC--CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHH
Q 027511 76 TVSTRVGGVPEVLPDDMVVLAE--PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEI 141 (222)
Q Consensus 76 vVa~~~gg~~e~i~~~~~g~~~--~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~ 141 (222)
||+++.++..|++.++.+|+.. .|+++++++|.+++++++ ..++.++++.+.+.|||+.+++++.+
T Consensus 297 vI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 297 VVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred EEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 9999999999999988777554 389999999999999876 56778889999999999999999875
No 14
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.91 E-value=4.3e-24 Score=185.48 Aligned_cols=137 Identities=25% Similarity=0.312 Sum_probs=125.8
Q ss_pred CceEEEEEcCCccH--------HHHHHHHHH-cCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhC
Q 027511 3 VKVRFIVGGDGPKR--------VRLEEMREK-HSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCG 73 (222)
Q Consensus 3 p~~~lvi~G~g~~~--------~~l~~~~~~-~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G 73 (222)
|+++|+++|+|+.+ +++++++++ +++.++|.|+|+++.+++..+|+.||++++||..|+||++++|||+||
T Consensus 244 ~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G 323 (392)
T cd03805 244 KNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAG 323 (392)
T ss_pred cCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcC
Confidence 79999999998753 788888998 899999999999999999999999999999999999999999999999
Q ss_pred CcEEEeCCCCccccccCCceEE-eCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHH
Q 027511 74 LLTVSTRVGGVPEVLPDDMVVL-AEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRT 139 (222)
Q Consensus 74 ~PvVa~~~gg~~e~i~~~~~g~-~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~ 139 (222)
+|||+++.||..|++.++.+|+ ..+|+++++++|.+++++++ ..++.++++.+.++|+|+.+++++
T Consensus 324 ~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 324 KPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred CCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9999999999999999987775 45599999999999999886 678889999999999999998763
No 15
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.91 E-value=1.5e-23 Score=181.05 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=129.0
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCC--hhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVP--HAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~--~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
++++|+|+|+|+.++.++++++++++.++|.|+|+++ .+++.++|..+|++|+||..|+||++++||||||+|||+++
T Consensus 209 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~ 288 (359)
T PRK09922 209 GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSD 288 (359)
T ss_pred CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeC
Confidence 4789999999999999999999999999999999884 48899999999999999999999999999999999999999
Q ss_pred -CCCccccccCCceEEe--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 81 -VGGVPEVLPDDMVVLA--EPDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 81 -~gg~~e~i~~~~~g~~--~~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
.||..|++.++.+|+. ..|+++++++|.+++++++.. ...+......+|+-+.+.+++.+.|..+.+
T Consensus 289 ~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 289 CMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKY-QHDAIPNSIERFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred CCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 8999999999887754 348999999999999998733 345555566789999999999999998764
No 16
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.91 E-value=5.4e-24 Score=184.44 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=128.7
Q ss_pred CCceEEEEEcCCccH-----HHHHHHHHHcCCCCcEEEeCCC--ChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCC
Q 027511 2 RVKVRFIVGGDGPKR-----VRLEEMREKHSLQDRVEMLGAV--PHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGL 74 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~-----~~l~~~~~~~~l~~~V~~~g~v--~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~ 74 (222)
.|+++|+|+|+|+.. +.++++.+..++.++|.|+|.. +.+++..+|+.+|++++||..|+||++++|||+||+
T Consensus 219 ~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~ 298 (372)
T cd03792 219 VPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGK 298 (372)
T ss_pred CCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCC
Confidence 478999999998642 2355556567778889999986 889999999999999999999999999999999999
Q ss_pred cEEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 75 LTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 75 PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
|||+++.||..+++.++.+|+..+++++++.+|.+++++++ ..++.++++.+.+.|+|+.+++++.++|++
T Consensus 299 Pvv~s~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 299 PVIAGPVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred CEEEcCCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999888889999999999998766 677888899999999999999999999975
No 17
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.91 E-value=1.4e-23 Score=177.88 Aligned_cols=139 Identities=21% Similarity=0.288 Sum_probs=123.8
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcC-CCCcEEEeCCCChhHHHHHHHhccEEEEcCC-CccccHHHHHHHHhCCcEEEe
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHS-LQDRVEMLGAVPHAQVRSVLISGHIFLNSSL-TEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~-l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~-~E~~g~~ilEAma~G~PvVa~ 79 (222)
.++++|+|+|+|+....+........ +.++|.|+|+++++++..+++.+|++++||. .|+||++++||||||+|||++
T Consensus 195 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~ 274 (335)
T cd03802 195 RAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAF 274 (335)
T ss_pred hcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEe
Confidence 35789999999988877777666554 5689999999999999999999999999998 599999999999999999999
Q ss_pred CCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 80 RVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 80 ~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
+.||..|++.++.+|+..+++++++++|.++.+. ...++++.+.++|||+.+++++.++|+
T Consensus 275 ~~~~~~e~i~~~~~g~l~~~~~~l~~~l~~l~~~----~~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 275 RRGAVPEVVEDGVTGFLVDSVEELAAAVARADRL----DRAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred CCCCchhheeCCCcEEEeCCHHHHHHHHHHHhcc----HHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999998888777799999999998754 356778888999999999999999984
No 18
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.91 E-value=1.1e-23 Score=184.88 Aligned_cols=146 Identities=18% Similarity=0.184 Sum_probs=130.0
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCcc----ccHHHHHHHHhCCcEE
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEA----FCIAILEAASCGLLTV 77 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~----~g~~ilEAma~G~PvV 77 (222)
.|+++|+|+|+|+.+++++++++++++. +|.|+|+++++++..+|++||+++.||..|+ +|.+++|||+||+|||
T Consensus 257 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi 335 (412)
T PRK10307 257 RPDLIFVICGQGGGKARLEKMAQCRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVV 335 (412)
T ss_pred CCCeEEEEECCChhHHHHHHHHHHcCCC-ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEE
Confidence 4789999999999999999999999986 7999999999999999999999999999888 6788999999999999
Q ss_pred EeCCCC--ccccccCCceEEeC-CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Q 027511 78 STRVGG--VPEVLPDDMVVLAE-PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALEC 149 (222)
Q Consensus 78 a~~~gg--~~e~i~~~~~g~~~-~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 149 (222)
+++.|| ..+++. +.+.+.. .|+++++++|.++++++. ..++.++++.+.++|||+.+++++.++|++++.+
T Consensus 336 ~s~~~g~~~~~~i~-~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 336 ATAEPGTELGQLVE-GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred EEeCCCchHHHHHh-CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 999876 458887 3333333 489999999999998876 6788999999999999999999999999998764
No 19
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.91 E-value=1.1e-23 Score=198.41 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=127.7
Q ss_pred CceEEEEEcCCcc-----------HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhc----cEEEEcCCCccccHHHH
Q 027511 3 VKVRFIVGGDGPK-----------RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISG----HIFLNSSLTEAFCIAIL 67 (222)
Q Consensus 3 p~~~lvi~G~g~~-----------~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~a----dv~v~~s~~E~~g~~il 67 (222)
+++. +|+|+|+. ...++.+++++++.++|.|+|+++++++..+|+.| |+||+||.+|+||++++
T Consensus 511 ~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlL 589 (1050)
T TIGR02468 511 ANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLI 589 (1050)
T ss_pred CCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHH
Confidence 4665 45676653 24577889999999999999999999999999988 69999999999999999
Q ss_pred HHHHhCCcEEEeCCCCccccccCCceEEeC-C-CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027511 68 EAASCGLLTVSTRVGGVPEVLPDDMVVLAE-P-DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVY 143 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~~e~i~~~~~g~~~-~-~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 143 (222)
||||||+|||+|+.||+.|++.++.+|+.. + |+++|+++|.++++++. ..++.++++++. .|+|+.+++++.+.|
T Consensus 590 EAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~-~FSWe~ia~~yl~~i 668 (1050)
T TIGR02468 590 EAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLKNIH-LFSWPEHCKTYLSRI 668 (1050)
T ss_pred HHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHH
Confidence 999999999999999999999998877543 3 89999999999999877 677888888875 699999999999999
Q ss_pred HHHhcCC
Q 027511 144 DRALECP 150 (222)
Q Consensus 144 ~~~~~~~ 150 (222)
..+...+
T Consensus 669 ~~~~~~~ 675 (1050)
T TIGR02468 669 ASCRPRH 675 (1050)
T ss_pred HHHhccC
Confidence 9887654
No 20
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.91 E-value=7.6e-24 Score=185.09 Aligned_cols=139 Identities=20% Similarity=0.220 Sum_probs=119.3
Q ss_pred CCceEEEEEcCCcc---------HHHHHHHHHHcCC---CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHH
Q 027511 2 RVKVRFIVGGDGPK---------RVRLEEMREKHSL---QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEA 69 (222)
Q Consensus 2 ~p~~~lvi~G~g~~---------~~~l~~~~~~~~l---~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEA 69 (222)
.|+++|+|+|++.. ....+++.++++. .++|.|+|+++++++..+|+.||++++||..|++|++++||
T Consensus 241 ~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEA 320 (396)
T cd03818 241 RPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEA 320 (396)
T ss_pred CCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHH
Confidence 58999999997421 1123334444432 47899999999999999999999999999999999999999
Q ss_pred HHhCCcEEEeCCCCccccccCCceEEeCC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHH
Q 027511 70 ASCGLLTVSTRVGGVPEVLPDDMVVLAEP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTE 140 (222)
Q Consensus 70 ma~G~PvVa~~~gg~~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~ 140 (222)
||||+|||+++.||..|++.++.+|+..+ |+++++++|.+++++++ ..++.++++++.++|+|+.+++++.
T Consensus 321 mA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 321 MACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 99999999999999999999988776544 89999999999999876 6788999999999999999998875
No 21
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.91 E-value=5.4e-24 Score=190.46 Aligned_cols=140 Identities=21% Similarity=0.245 Sum_probs=126.1
Q ss_pred CCceEEEEEcCCc----cHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEE
Q 027511 2 RVKVRFIVGGDGP----KRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTV 77 (222)
Q Consensus 2 ~p~~~lvi~G~g~----~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvV 77 (222)
.|+++|+|+|+|+ ..++++++++++++.++|.|+| .+++.++|+++|++|+||..|+||++++||||||+|||
T Consensus 322 ~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVV 398 (475)
T cd03813 322 IPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVV 398 (475)
T ss_pred CCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEE
Confidence 5899999999884 2467788899999999999999 57899999999999999999999999999999999999
Q ss_pred EeCCCCccccccC------CceEEe-C-CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 78 STRVGGVPEVLPD------DMVVLA-E-PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 78 a~~~gg~~e~i~~------~~~g~~-~-~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
+|+.|+..|++.+ +.+|+. . .|+++++++|.+++++++ ..++.++++++.+.|+|+.+++++.++|+
T Consensus 399 atd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 399 ATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred ECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999998 445543 3 389999999999999876 77889999999999999999999999984
No 22
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.91 E-value=1.9e-23 Score=179.78 Aligned_cols=141 Identities=28% Similarity=0.414 Sum_probs=129.4
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
++++++++|+|+..+.+++++++++++++|.|+|.. +++..+|+.+|++|+||..|+||++++|||+||+|||+++.|
T Consensus 226 ~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~ 303 (371)
T cd04962 226 VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAG 303 (371)
T ss_pred CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCC
Confidence 468999999999999999999999999999999985 679999999999999999999999999999999999999999
Q ss_pred CccccccCCceEEeCC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 83 GVPEVLPDDMVVLAEP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 83 g~~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
+.+|++.++.+|+..+ |+++++++|.++++++. ..++.++++.+.+.|+|+.+++++.++|++
T Consensus 304 ~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 304 GIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALYRR 370 (371)
T ss_pred CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999987776544 89999999999998876 567888888888999999999999999975
No 23
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.91 E-value=1.3e-23 Score=185.19 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=119.0
Q ss_pred CceEEEEEcCCc------cHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcE
Q 027511 3 VKVRFIVGGDGP------KRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLT 76 (222)
Q Consensus 3 p~~~lvi~G~g~------~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~Pv 76 (222)
++++|+|+|+|. ..++++++++++++.++|.|+|.++++++..+|+.||++|+||..|+||++++|||+||+||
T Consensus 272 ~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pv 351 (419)
T cd03806 272 EKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIP 351 (419)
T ss_pred CceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcE
Confidence 469999999874 34678889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCc-ccccc---CCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHH
Q 027511 77 VSTRVGGV-PEVLP---DDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAK 137 (222)
Q Consensus 77 Va~~~gg~-~e~i~---~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~ 137 (222)
|+++.||. .|++. ++.+|+..+|+++++++|.++++++. +.++.++++.+.++|||+.+.+
T Consensus 352 Ia~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 352 LAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred EEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 99999875 57777 78888887899999999999999765 4445777777889999998754
No 24
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.90 E-value=1.6e-23 Score=184.06 Aligned_cols=137 Identities=23% Similarity=0.356 Sum_probs=124.9
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHh--ccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLIS--GHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~--adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+++++++|+|+..+.+++++++++..++|.|+|+++++++..+++. +|++++||..|++|++++|||+||+|||+|++
T Consensus 263 ~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v 342 (407)
T cd04946 263 KIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV 342 (407)
T ss_pred eEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC
Confidence 5678899999999999999988888889999999999999999976 78999999999999999999999999999999
Q ss_pred CCccccccCCceEEe-CC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLA-EP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTE 140 (222)
Q Consensus 82 gg~~e~i~~~~~g~~-~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~ 140 (222)
||.+|++.++.+|+. ++ |+++++++|.+++++++ ..++.++++.+.++|+|+...+++.
T Consensus 343 gg~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 343 GGTPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred CCcHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 999999999977653 32 78999999999999776 7789999999999999999998874
No 25
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.90 E-value=5e-23 Score=175.74 Aligned_cols=141 Identities=26% Similarity=0.445 Sum_probs=126.1
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+|+++|+|+|+|+..+++++.++++++.++|.|+|.+ +++..+|+.||++++||..|+||++++|||++|+|||+++.
T Consensus 217 ~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~ 294 (360)
T cd04951 217 YLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDA 294 (360)
T ss_pred CCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecC
Confidence 5789999999999999999999999998999999985 68999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
|+..|++.+.+..+...|+++++++|.+++++.. .....+++..+.+.|+|+.+++++.++|+
T Consensus 295 ~~~~e~i~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 295 GGVREVVGDSGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred CChhhEecCCceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 9999999986666666799999999999996544 33344447788899999999999999996
No 26
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.90 E-value=2.4e-23 Score=192.36 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=120.0
Q ss_pred CceEEEEEcCCcc------------HHHHHHHHHHcCCCCcEEEeCCC-ChhHHHHHHH----hccEEEEcCCCccccHH
Q 027511 3 VKVRFIVGGDGPK------------RVRLEEMREKHSLQDRVEMLGAV-PHAQVRSVLI----SGHIFLNSSLTEAFCIA 65 (222)
Q Consensus 3 p~~~lvi~G~g~~------------~~~l~~~~~~~~l~~~V~~~g~v-~~~~~~~ll~----~adv~v~~s~~E~~g~~ 65 (222)
++++|+|+|+++. ..++.++++++++.++|.|+|.. +..+...+++ ++|+||+||.+|+||++
T Consensus 580 ~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLv 659 (784)
T TIGR02470 580 ELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLT 659 (784)
T ss_pred CCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHH
Confidence 4688999997642 24567788999999999999985 5566666665 35799999999999999
Q ss_pred HHHHHHhCCcEEEeCCCCccccccCCceEEeCC--CHHHHHHHHHHHHh----cCC--CCCHHHHHHHHHhcCCHHHHHH
Q 027511 66 ILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP--DPGDMVLAIRKAIS----LLP--KIDPQVMHERMKKLYNWHDVAK 137 (222)
Q Consensus 66 ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~--~~~~la~~i~~ll~----~~~--~~~~~~~~~~~~~~fs~~~~~~ 137 (222)
++|||+||+|||+|++||+.|++.++.+|+..+ |+++++++|.++++ ++. +.++.++++++.++|||+.+++
T Consensus 660 vLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~ 739 (784)
T TIGR02470 660 VLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSE 739 (784)
T ss_pred HHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999998886543 89999999999874 444 6788889999999999999999
Q ss_pred HHHHHH
Q 027511 138 RTEIVY 143 (222)
Q Consensus 138 ~~~~~~ 143 (222)
++.++.
T Consensus 740 ~ll~l~ 745 (784)
T TIGR02470 740 RLLTLA 745 (784)
T ss_pred HHHHHH
Confidence 999876
No 27
>PLN00142 sucrose synthase
Probab=99.90 E-value=4.7e-23 Score=190.66 Aligned_cols=142 Identities=22% Similarity=0.301 Sum_probs=120.4
Q ss_pred CCceEEEEEcCCc------cH------HHHHHHHHHcCCCCcEEEeCCC----ChhHHHHHHHh-ccEEEEcCCCccccH
Q 027511 2 RVKVRFIVGGDGP------KR------VRLEEMREKHSLQDRVEMLGAV----PHAQVRSVLIS-GHIFLNSSLTEAFCI 64 (222)
Q Consensus 2 ~p~~~lvi~G~g~------~~------~~l~~~~~~~~l~~~V~~~g~v----~~~~~~~ll~~-adv~v~~s~~E~~g~ 64 (222)
.++++|+|+|+|. .. ..+.++++++++.++|.|+|.. +.+++..+++. +|+||+||.+|+||+
T Consensus 602 ~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGL 681 (815)
T PLN00142 602 RELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGL 681 (815)
T ss_pred CCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCH
Confidence 3578999999872 11 3466788999999999999854 34677777774 799999999999999
Q ss_pred HHHHHHHhCCcEEEeCCCCccccccCCceEEeCC--CHHHHHHHHHHHH----hcCC--CCCHHHHHHHHHhcCCHHHHH
Q 027511 65 AILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP--DPGDMVLAIRKAI----SLLP--KIDPQVMHERMKKLYNWHDVA 136 (222)
Q Consensus 65 ~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~--~~~~la~~i~~ll----~~~~--~~~~~~~~~~~~~~fs~~~~~ 136 (222)
+++||||||+|||+|+.||+.|++.++.+|+..+ |+++++++|.+++ .++. ..++.++++++.++|||+.++
T Consensus 682 vvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A 761 (815)
T PLN00142 682 TVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYA 761 (815)
T ss_pred HHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999998886543 8999999998766 3444 678889999999999999999
Q ss_pred HHHHHHH
Q 027511 137 KRTEIVY 143 (222)
Q Consensus 137 ~~~~~~~ 143 (222)
+++.++.
T Consensus 762 ~rll~L~ 768 (815)
T PLN00142 762 ERLLTLG 768 (815)
T ss_pred HHHHHHH
Confidence 9999876
No 28
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.90 E-value=6.6e-23 Score=175.37 Aligned_cols=139 Identities=16% Similarity=0.260 Sum_probs=122.2
Q ss_pred ceEEEEEcCCccHHHHHHHHH-HcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCC-ccccHHHHHHHHhCCcEEEeCC
Q 027511 4 KVRFIVGGDGPKRVRLEEMRE-KHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLT-EAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~-~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~-E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+++|+++|+|+....+.+.++ ++++.++|+|+|+++++++.++++++|+++.||.. |+||++++|||+||+|||+++.
T Consensus 221 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~ 300 (363)
T cd04955 221 GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDN 300 (363)
T ss_pred CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecC
Confidence 689999999876666666555 67888999999999999999999999999999998 9999999999999999999999
Q ss_pred CCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
|+..|++.++..++..+++ ++++|.++++++. ..++.++++.+.+.|||+.+++++.++|+
T Consensus 301 ~~~~e~~~~~g~~~~~~~~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 301 PFNREVLGDKAIYFKVGDD--LASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred CccceeecCCeeEecCchH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999885444444343 9999999999876 66788889999999999999999999884
No 29
>PLN02939 transferase, transferring glycosyl groups
Probab=99.89 E-value=1.8e-22 Score=188.00 Aligned_cols=144 Identities=18% Similarity=0.308 Sum_probs=122.2
Q ss_pred CceEEEEEcCCccH---HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 3 VKVRFIVGGDGPKR---VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 3 p~~~lvi~G~g~~~---~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
++++|+|+|+|+.. .+++++++++++.++|.|+|.++......+|+.+|+||+||.+|+||++++|||+||+|+|++
T Consensus 807 ~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs 886 (977)
T PLN02939 807 LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVR 886 (977)
T ss_pred cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEe
Confidence 47899999999753 678888999999899999999987778899999999999999999999999999999999999
Q ss_pred CCCCccccccC---------CceEEe--CCCHHHHHHHHHHHHhc----CC--CCCHHHHHHHHHhcCCHHHHHHHHHHH
Q 027511 80 RVGGVPEVLPD---------DMVVLA--EPDPGDMVLAIRKAISL----LP--KIDPQVMHERMKKLYNWHDVAKRTEIV 142 (222)
Q Consensus 80 ~~gg~~e~i~~---------~~~g~~--~~~~~~la~~i~~ll~~----~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~ 142 (222)
++||+.|+|.+ +.+||. +.|+++++++|.+++.. +. ..++ .+...+.|||+.++++|+++
T Consensus 887 ~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~---~~am~~dFSWe~~A~qYeeL 963 (977)
T PLN02939 887 KTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLV---QKDMNIDFSWDSSASQYEEL 963 (977)
T ss_pred cCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHH---HHHHHhcCCHHHHHHHHHHH
Confidence 99999999865 356654 34999999999998863 22 2222 23345789999999999999
Q ss_pred HHHHhcC
Q 027511 143 YDRALEC 149 (222)
Q Consensus 143 ~~~~~~~ 149 (222)
|++++..
T Consensus 964 Y~~ll~~ 970 (977)
T PLN02939 964 YQRAVAR 970 (977)
T ss_pred HHHHHHh
Confidence 9998754
No 30
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.89 E-value=1.8e-22 Score=178.24 Aligned_cols=135 Identities=21% Similarity=0.212 Sum_probs=116.8
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.|+++|+|+|+|+.+++++++++++++..++ |.|.... .+++..+|+||+||.+|+||++++||||||+|||+++.
T Consensus 257 ~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~v-f~G~~~~---~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~ 332 (462)
T PLN02846 257 LSGLEVDLYGSGEDSDEVKAAAEKLELDVRV-YPGRDHA---DPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 332 (462)
T ss_pred CCCeEEEEECCCccHHHHHHHHHhcCCcEEE-ECCCCCH---HHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecC
Confidence 5789999999999999999999999886544 7887533 37999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
++ .+++.++.+++..+|++++++++.+++.++..... ....+.|||+..++++.++|+-
T Consensus 333 ~~-~~~v~~~~ng~~~~~~~~~a~ai~~~l~~~~~~~~----~~a~~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 333 PS-NEFFKQFPNCRTYDDGKGFVRATLKALAEEPAPLT----DAQRHELSWEAATERFLRVADL 391 (462)
T ss_pred CC-cceeecCCceEecCCHHHHHHHHHHHHccCchhHH----HHHHHhCCHHHHHHHHHHHhcc
Confidence 98 59999999998889999999999999986432222 2234689999999999999974
No 31
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.89 E-value=1.2e-22 Score=172.39 Aligned_cols=139 Identities=21% Similarity=0.319 Sum_probs=123.2
Q ss_pred CCceEEEEEcCCcc--HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 2 RVKVRFIVGGDGPK--RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 2 ~p~~~lvi~G~g~~--~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
+|+++|+++|.++. ...++.+++++++.++|.|+|+++++++..+|++||++++||..|+||++++|||+||+|||++
T Consensus 232 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~ 311 (375)
T cd03821 232 FPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTT 311 (375)
T ss_pred cCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEc
Confidence 58999999997643 3555666688999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHH
Q 027511 80 RVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTE 140 (222)
Q Consensus 80 ~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~ 140 (222)
+.||..+++.++...+..+++++++++|.+++++++ ..++.++++.+.++|+|+.+++++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 312 DKVPWQELIEYGCGWVVDDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred CCCCHHHHhhcCceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 999999999994444555677999999999999876 6778888888899999999999875
No 32
>PRK14098 glycogen synthase; Provisional
Probab=99.89 E-value=1.9e-22 Score=180.90 Aligned_cols=144 Identities=19% Similarity=0.327 Sum_probs=120.3
Q ss_pred CceEEEEEcCCcc--HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 3 VKVRFIVGGDGPK--RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 3 p~~~lvi~G~g~~--~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
++++|+|+|+|+. .+.++++++++ +++|.|+|.++.+++..+|+.||++|+||..|+||++.+|||+||+|+|+++
T Consensus 335 ~~~~lvivG~G~~~~~~~l~~l~~~~--~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~ 412 (489)
T PRK14098 335 LDIQLVICGSGDKEYEKRFQDFAEEH--PEQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYA 412 (489)
T ss_pred cCcEEEEEeCCCHHHHHHHHHHHHHC--CCCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEec
Confidence 4789999999974 47888888876 4789999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccC----CceEEeC--CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 81 VGGVPEVLPD----DMVVLAE--PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 81 ~gg~~e~i~~----~~~g~~~--~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
+||+.|++.+ +.+|+.. .|+++++++|.++++... .......++...+.|||+.+++++.++|+++++
T Consensus 413 ~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 413 GGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVLEAMERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred CCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc
Confidence 9999998864 4566543 389999999999875422 222333334456789999999999999998864
No 33
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.89 E-value=1.9e-22 Score=174.89 Aligned_cols=145 Identities=21% Similarity=0.374 Sum_probs=122.9
Q ss_pred CceEEEEEcCCccH----HHHHHHHHHcCC-CCcEEEe-CCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcE
Q 027511 3 VKVRFIVGGDGPKR----VRLEEMREKHSL-QDRVEML-GAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLT 76 (222)
Q Consensus 3 p~~~lvi~G~g~~~----~~l~~~~~~~~l-~~~V~~~-g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~Pv 76 (222)
++++++++|+|+.. +++++.+..++. .++|.++ |.++.+++..+|+.||++|+||..|+||++++|||+||+||
T Consensus 228 ~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~Pv 307 (388)
T TIGR02149 228 KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPV 307 (388)
T ss_pred hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCE
Confidence 46788998877654 345555555554 2357764 67899999999999999999999999999999999999999
Q ss_pred EEeCCCCccccccCCceEEeCC--CH------HHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 027511 77 VSTRVGGVPEVLPDDMVVLAEP--DP------GDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRA 146 (222)
Q Consensus 77 Va~~~gg~~e~i~~~~~g~~~~--~~------~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 146 (222)
|+++.||.+|++.++.+|+..+ |+ ++++++|.+++++++ ..++.++++.+.++|||+.+++++.++|+++
T Consensus 308 I~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 308 VASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKV 387 (388)
T ss_pred EEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 9999999999999987776543 66 899999999999876 6678889999999999999999999999876
Q ss_pred h
Q 027511 147 L 147 (222)
Q Consensus 147 ~ 147 (222)
+
T Consensus 388 ~ 388 (388)
T TIGR02149 388 L 388 (388)
T ss_pred C
Confidence 3
No 34
>PLN02316 synthase/transferase
Probab=99.89 E-value=4.5e-22 Score=187.91 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=123.9
Q ss_pred CceEEEEEcCCcc---HHHHHHHHHHcCC--CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEE
Q 027511 3 VKVRFIVGGDGPK---RVRLEEMREKHSL--QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTV 77 (222)
Q Consensus 3 p~~~lvi~G~g~~---~~~l~~~~~~~~l--~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvV 77 (222)
++++|+|+|+|+. ...++++++++++ +++|.|.|..+......+|+.||+||+||.+|+||++.+|||+||+|+|
T Consensus 868 ~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppV 947 (1036)
T PLN02316 868 RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPV 947 (1036)
T ss_pred cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeE
Confidence 4789999999975 4678888888865 6789998887555556899999999999999999999999999999999
Q ss_pred EeCCCCccccccCC-------------ceEEeCC--CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCHHHHHHHH
Q 027511 78 STRVGGVPEVLPDD-------------MVVLAEP--DPGDMVLAIRKAISLLP---KIDPQVMHERMKKLYNWHDVAKRT 139 (222)
Q Consensus 78 a~~~gg~~e~i~~~-------------~~g~~~~--~~~~la~~i~~ll~~~~---~~~~~~~~~~~~~~fs~~~~~~~~ 139 (222)
++++||++|+|.++ .+||..+ |+++++.+|.+++.... ..+...+++.+.+.|||+.++++|
T Consensus 948 vs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y 1027 (1036)
T PLN02316 948 VRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDY 1027 (1036)
T ss_pred EEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 99999999999874 4676544 89999999999998742 345667777788899999999999
Q ss_pred HHHHHHHh
Q 027511 140 EIVYDRAL 147 (222)
Q Consensus 140 ~~~~~~~~ 147 (222)
+++|+.+.
T Consensus 1028 ~~LY~~a~ 1035 (1036)
T PLN02316 1028 MELYHSAR 1035 (1036)
T ss_pred HHHHHHHh
Confidence 99999875
No 35
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.89 E-value=2.1e-22 Score=174.45 Aligned_cols=139 Identities=27% Similarity=0.462 Sum_probs=124.8
Q ss_pred CCceEEEEEcCCccH------HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCc
Q 027511 2 RVKVRFIVGGDGPKR------VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLL 75 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~------~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~P 75 (222)
.|+++|+++|+++.. ..++.+++++++.++|.|+|+++.+++..+++.||++++||..|+||++++|||+||+|
T Consensus 249 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~P 328 (398)
T cd03800 249 RERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLP 328 (398)
T ss_pred CCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCC
Confidence 478999999987542 44577888889989999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccccccCCceEEeCC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHH
Q 027511 76 TVSTRVGGVPEVLPDDMVVLAEP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTE 140 (222)
Q Consensus 76 vVa~~~gg~~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~ 140 (222)
||+++.+|..|++.++.+|+..+ |+++++++|.+++++++ ..++.++++.+.+.|||+.+++++.
T Consensus 329 vi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 329 VVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred EEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 99999999999999987776543 89999999999999876 6688889999999999999999875
No 36
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.88 E-value=2.6e-22 Score=170.99 Aligned_cols=137 Identities=31% Similarity=0.490 Sum_probs=126.6
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCC------ccccHHHHHHHHhCCc
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLT------EAFCIAILEAASCGLL 75 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~------E~~g~~ilEAma~G~P 75 (222)
.|+++|+++|+|+...++++.++++++.++|.++|+++.+++..+|++||++++||.. |+||++++|||+||+|
T Consensus 208 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~P 287 (355)
T cd03799 208 GIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLP 287 (355)
T ss_pred CCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred EEEeCCCCccccccCCceEEe-CC-CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHH
Q 027511 76 TVSTRVGGVPEVLPDDMVVLA-EP-DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKR 138 (222)
Q Consensus 76 vVa~~~gg~~e~i~~~~~g~~-~~-~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~ 138 (222)
||+++.|+..+++.++.+|+. .+ |+++++++|.++++++. ..++.++++.+.+.|+|+.++++
T Consensus 288 vi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 288 VISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred EEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999999999999999866654 33 89999999999999877 67788899999999999998875
No 37
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.88 E-value=4e-22 Score=168.59 Aligned_cols=141 Identities=29% Similarity=0.443 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCccHHHHHHHHH-HcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMRE-KHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~-~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+|+++|+++|.++.....+.... ++++.++|.++|.. +++..+|+.||++++||..|++|++++|||+||+|||+++
T Consensus 222 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~ 299 (365)
T cd03807 222 FPNARLLLVGDGPDRANLELLALKELGLEDKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATD 299 (365)
T ss_pred CCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcC
Confidence 57899999999998888888887 88899999999974 7899999999999999999999999999999999999999
Q ss_pred CCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 81 VGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 81 ~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
.|+..|++.+.+..+...|+++++++|.+++++++ ..++.++++.+.++|||+.+++++.++|+
T Consensus 300 ~~~~~e~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 300 VGDNAELVGDTGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred CCChHHHhhcCCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999983333445589999999999999876 66788899999999999999999999884
No 38
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.88 E-value=3.9e-22 Score=167.94 Aligned_cols=143 Identities=36% Similarity=0.575 Sum_probs=130.7
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+|+++|+++|+++....+++.+++++..++|.++|+++.+++..+|++||++++|+..|++|++++|||++|+|||+++.
T Consensus 228 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~ 307 (374)
T cd03801 228 YPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV 307 (374)
T ss_pred cCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCC
Confidence 47899999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLAEP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
++..|++.++..|+..+ |+++++++|.+++++++ ..+..++++.+.+.|+|+.+++++.++|+
T Consensus 308 ~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 308 GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTEEVYY 374 (374)
T ss_pred CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhC
Confidence 99999999777765433 68999999999999877 66777788889999999999999998873
No 39
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.88 E-value=6.7e-22 Score=176.56 Aligned_cols=143 Identities=20% Similarity=0.314 Sum_probs=115.8
Q ss_pred CceEEEEEcCCcc--HHHHHHHHHHcCCCCcEEE-eCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 3 VKVRFIVGGDGPK--RVRLEEMREKHSLQDRVEM-LGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 3 p~~~lvi~G~g~~--~~~l~~~~~~~~l~~~V~~-~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
++++|+|+|+|+. .+++++++++++ +++.+ .|+ +.+.+..+|+.||++|+||.+|+||++++|||+||+|||++
T Consensus 310 ~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~ 386 (466)
T PRK00654 310 QGGQLVLLGTGDPELEEAFRALAARYP--GKVGVQIGY-DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVR 386 (466)
T ss_pred cCCEEEEEecCcHHHHHHHHHHHHHCC--CcEEEEEeC-CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEe
Confidence 3789999999864 467888888876 45665 555 66677899999999999999999999999999999999999
Q ss_pred CCCCccccccCC------ceEEeC--CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 80 RVGGVPEVLPDD------MVVLAE--PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 80 ~~gg~~e~i~~~------~~g~~~--~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
++||+.|++.++ .+|+.. .|+++++++|.++++... ........+..++.|||+.+++++.++|+++++
T Consensus 387 ~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 387 RTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAMAQDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred CCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Confidence 999999999887 667543 389999999999987432 112222233345789999999999999998764
No 40
>PHA01630 putative group 1 glycosyl transferase
Probab=99.88 E-value=7.4e-22 Score=168.93 Aligned_cols=135 Identities=21% Similarity=0.268 Sum_probs=111.5
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.++++++|+|++.....+ .++.+ +.|.++++++..+|+.||++++||..|+||++++||||||+|||+|+.
T Consensus 171 ~~~~~llivG~~~~~~~l------~~~~~---~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~ 241 (331)
T PHA01630 171 GYDFYFLIKSSNMLDPRL------FGLNG---VKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEK 241 (331)
T ss_pred CCCEEEEEEeCcccchhh------ccccc---eeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCC
Confidence 478999999976543321 12222 356789999999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEe---------------------CCCHHHHHHHHHHHHhcC--C--CCCHHHHHHHHHhcCCHHHHH
Q 027511 82 GGVPEVLPDDMVVLA---------------------EPDPGDMVLAIRKAISLL--P--KIDPQVMHERMKKLYNWHDVA 136 (222)
Q Consensus 82 gg~~e~i~~~~~g~~---------------------~~~~~~la~~i~~ll~~~--~--~~~~~~~~~~~~~~fs~~~~~ 136 (222)
||..|++.++.+|+. ++|.+++++++.+++.++ + +.+..++.....++|||+.++
T Consensus 242 gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia 321 (331)
T PHA01630 242 GAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIA 321 (331)
T ss_pred CCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999998865432 458899999999999875 2 455666777788999999999
Q ss_pred HHHHHHHHH
Q 027511 137 KRTEIVYDR 145 (222)
Q Consensus 137 ~~~~~~~~~ 145 (222)
++++++|++
T Consensus 322 ~k~~~l~~~ 330 (331)
T PHA01630 322 KMWEKILEK 330 (331)
T ss_pred HHHHHHHhc
Confidence 999999964
No 41
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.88 E-value=1.9e-22 Score=174.18 Aligned_cols=135 Identities=23% Similarity=0.255 Sum_probs=122.3
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+|+++|+|+|.|+....+.++++++++.++|.|.|+ .+++..+|+.||++|+||..|+||++++|||+||+|||+++.
T Consensus 233 ~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~ 310 (372)
T cd04949 233 VPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGY--TRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDV 310 (372)
T ss_pred CCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCC--CCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecC
Confidence 689999999999999999999999999999999995 578999999999999999999999999999999999999998
Q ss_pred C-CccccccCCceEEeCC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHH
Q 027511 82 G-GVPEVLPDDMVVLAEP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRT 139 (222)
Q Consensus 82 g-g~~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~ 139 (222)
+ |..+++.++.+|+..+ |+++++++|.+++++++ ..++.++++. .++|||+.++++|
T Consensus 311 ~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~-~~~~s~~~~~~~w 372 (372)
T cd04949 311 NYGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYEN-AERYSEENVWEKW 372 (372)
T ss_pred CCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHhhHHHHHhcC
Confidence 7 8999999988886655 89999999999999876 6677777777 6789999998764
No 42
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.88 E-value=9.9e-22 Score=166.15 Aligned_cols=144 Identities=35% Similarity=0.576 Sum_probs=132.5
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+|+++++++|.++....+++.++++++.++|.++|+++++++..++++||++++|+..|++|++++|||++|+|||+++.
T Consensus 231 ~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~ 310 (377)
T cd03798 231 RPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDV 310 (377)
T ss_pred CCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEe--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLA--EPDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 82 gg~~e~i~~~~~g~~--~~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
|+..+++.++..|+. ..|+++++++|.++++++...+..++++.+.+.|+|+.+++++.++|++
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 311 GGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWLRLGRAARRRVAERFSWENVAERLLELYRE 376 (377)
T ss_pred CChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHHHHhHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999987643 3489999999999998865456788888999999999999999999875
No 43
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.88 E-value=8.9e-22 Score=173.38 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=114.6
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC---CccccHHHHHHHHhCCcEEE
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL---TEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~---~E~~g~~ilEAma~G~PvVa 78 (222)
+|+++|+|+|+|+.+++++++++++++.+.+.+.|+++.+++..+|+.||+++.++. .|++|++++||||||+|||+
T Consensus 267 ~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~ 346 (415)
T cd03816 267 LPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA 346 (415)
T ss_pred CCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEE
Confidence 478999999999999999999999999765555678999999999999999986432 47899999999999999999
Q ss_pred eCCCCccccccCCceEEeCCCHHHHHHHHHHHHhc---CC--CCCHHHHHHHHHhcCCHHHHHHH
Q 027511 79 TRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISL---LP--KIDPQVMHERMKKLYNWHDVAKR 138 (222)
Q Consensus 79 ~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~---~~--~~~~~~~~~~~~~~fs~~~~~~~ 138 (222)
++.||.+|++.++.+|+..+|+++++++|.+++++ ++ ..++.++++.. .++|+....+
T Consensus 347 s~~~~~~eiv~~~~~G~lv~d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~--~~~~~~~~~~ 409 (415)
T cd03816 347 LDFKCIDELVKHGENGLVFGDSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES--ELRWDENWDR 409 (415)
T ss_pred eCCCCHHHHhcCCCCEEEECCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh--hcCHHHHHHH
Confidence 99999999999998888778999999999999998 54 55666666554 4555554443
No 44
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.87 E-value=9.9e-22 Score=168.05 Aligned_cols=137 Identities=21% Similarity=0.324 Sum_probs=121.6
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCC-hhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVP-HAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~-~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
.++++++++|+++..... ++.++|.++|+++ .+++..+|+.||++++||..|+||++++|||+||+|||+++
T Consensus 223 ~~~~~~~i~G~~~~~~~~-------~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~ 295 (365)
T cd03825 223 KDDIELVVFGASDPEIPP-------DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFD 295 (365)
T ss_pred CCCeEEEEeCCCchhhhc-------cCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEec
Confidence 478999999988654321 4567899999998 78899999999999999999999999999999999999999
Q ss_pred CCCccccccCCceEEeCC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 81 VGGVPEVLPDDMVVLAEP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 81 ~gg~~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
.|+..|++.++.+|+..+ |+++++++|.+++++++ ..++.++++.+.+.|||+.+++++.++|++
T Consensus 296 ~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 296 VGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred CCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 999999999987765443 79999999999999876 667888888999999999999999999976
No 45
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.87 E-value=6.8e-22 Score=168.58 Aligned_cols=133 Identities=25% Similarity=0.370 Sum_probs=121.8
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC--CccccHHHHHHHHhCCcEEEeCC
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL--TEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+++|+|+|+|+....++++++++++.++|.|+|+++++++..++++||++++||. .|+||++++|||+||+|||+++.
T Consensus 218 ~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~ 297 (357)
T cd03795 218 DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEI 297 (357)
T ss_pred CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCC
Confidence 6899999999999999999989999999999999999999999999999999986 69999999999999999999999
Q ss_pred CCccccccC-CceEEeC--CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHH
Q 027511 82 GGVPEVLPD-DMVVLAE--PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVA 136 (222)
Q Consensus 82 gg~~e~i~~-~~~g~~~--~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~ 136 (222)
|+..+.+.+ +.+|+.. .|+++++++|.+++++++ ..++.++++.+.++|||+.++
T Consensus 298 ~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 298 GTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred CCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 999998886 6666543 389999999999999877 778899999999999999863
No 46
>PRK14099 glycogen synthase; Provisional
Probab=99.87 E-value=1.1e-21 Score=175.73 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=113.7
Q ss_pred CceEEEEEcCCcc--HHHHHHHHHHcCCCCcE-EEeCCCChhHHHHHH-HhccEEEEcCCCccccHHHHHHHHhCCcEEE
Q 027511 3 VKVRFIVGGDGPK--RVRLEEMREKHSLQDRV-EMLGAVPHAQVRSVL-ISGHIFLNSSLTEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 3 p~~~lvi~G~g~~--~~~l~~~~~~~~l~~~V-~~~g~v~~~~~~~ll-~~adv~v~~s~~E~~g~~ilEAma~G~PvVa 78 (222)
++++|+|+|+|+. .+++++++++++ +++ .|+|+ ++++..++ +.||+||+||.+|+||++.+|||+||+|+|+
T Consensus 323 ~~~~lvivG~G~~~~~~~l~~l~~~~~--~~v~~~~G~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv 398 (485)
T PRK14099 323 EGAQLALLGSGDAELEARFRAAAQAYP--GQIGVVIGY--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV 398 (485)
T ss_pred cCcEEEEEecCCHHHHHHHHHHHHHCC--CCEEEEeCC--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE
Confidence 4689999999863 577888887764 455 68998 68888887 4699999999999999999999999999999
Q ss_pred eCCCCccccccCC---------ceEEeC--CCHHHHHHHHHH---HHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHH
Q 027511 79 TRVGGVPEVLPDD---------MVVLAE--PDPGDMVLAIRK---AISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIV 142 (222)
Q Consensus 79 ~~~gg~~e~i~~~---------~~g~~~--~~~~~la~~i~~---ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~ 142 (222)
+++||++|++.++ .+|+.. .|+++++++|.+ +++++. +.++.++ ..+.|||+.++++++++
T Consensus 399 s~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~~---~~~~fSw~~~a~~y~~l 475 (485)
T PRK14099 399 ARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVAWRRLQRNG---MTTDVSWRNPAQHYAAL 475 (485)
T ss_pred eCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHh---hhhcCChHHHHHHHHHH
Confidence 9999999999765 456543 389999999998 444443 3334333 35789999999999999
Q ss_pred HHHHhcCC
Q 027511 143 YDRALECP 150 (222)
Q Consensus 143 ~~~~~~~~ 150 (222)
|++++...
T Consensus 476 Y~~l~~~~ 483 (485)
T PRK14099 476 YRSLVAER 483 (485)
T ss_pred HHHHHhhh
Confidence 99987643
No 47
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.87 E-value=1.1e-21 Score=167.11 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=120.0
Q ss_pred CCceEEEEEcCCccHHHHHH-----HHHHcCCCCcEEEeCC-CChhHHHHHHHhccEEEEcCCCc--cccHHHHHHHHhC
Q 027511 2 RVKVRFIVGGDGPKRVRLEE-----MREKHSLQDRVEMLGA-VPHAQVRSVLISGHIFLNSSLTE--AFCIAILEAASCG 73 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~-----~~~~~~l~~~V~~~g~-v~~~~~~~ll~~adv~v~~s~~E--~~g~~ilEAma~G 73 (222)
+|+++|+++|+++....... +++++++.++|.|+|. ++.+++..+|+.+|++++||..| ++|++++|||+||
T Consensus 214 ~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G 293 (366)
T cd03822 214 HPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFG 293 (366)
T ss_pred CCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcC
Confidence 57999999998865543332 3788899999999987 99999999999999999999999 9999999999999
Q ss_pred CcEEEeCCCCccccccCCceEE-eC-CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 74 LLTVSTRVGGVPEVLPDDMVVL-AE-PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 74 ~PvVa~~~gg~~e~i~~~~~g~-~~-~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
+|||+++.|+ .+.+.++.+|+ .. .|+++++++|.++++++. ..++.++++.+.+ |||+.+++++.++|+
T Consensus 294 ~PvI~~~~~~-~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 294 KPVISTPVGH-AEEVLDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERYLRLLA 366 (366)
T ss_pred CCEEecCCCC-hheeeeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhC
Confidence 9999999999 66665555544 33 379999999999999866 6677888888877 999999999999873
No 48
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.87 E-value=9.1e-22 Score=172.78 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=105.8
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC-ChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV-PHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v-~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
++++|+|+|+|+... .++|.++|.. +.+++..+|+++|+||+||..|+||++++||||||+|||+|++
T Consensus 270 ~~~~L~ivG~g~~~~-----------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~ 338 (405)
T PRK10125 270 DKIELHTFGKFSPFT-----------AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHS 338 (405)
T ss_pred CCeEEEEEcCCCccc-----------ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCC
Confidence 578899999875321 2468889987 5678999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEE-eCC-CHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVL-AEP-DPGDMVLAIRKAISLLP-KIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 82 gg~~e~i~~~~~g~-~~~-~~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
||++|++.+. +|+ +++ |+++|++.+...+.+.. .....++++++.+.||++.++++|.++|++
T Consensus 339 gG~~Eiv~~~-~G~lv~~~d~~~La~~~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 339 DAAREVLQKS-GGKTVSEEEVLQLAQLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred CChHHhEeCC-cEEEECCCCHHHHHhccCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999876 454 444 89999986543332211 112356888889999999999999999975
No 49
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.87 E-value=1.1e-21 Score=167.63 Aligned_cols=112 Identities=23% Similarity=0.264 Sum_probs=104.7
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+|+++++|+|+|+..+.+++.++++++.++|.|+|. .+++..+|+.||++|+||..|+||++++||||+|+|||+++.
T Consensus 221 ~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~ 298 (358)
T cd03812 221 NPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDT 298 (358)
T ss_pred CCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcC
Confidence 589999999999999999999999999999999999 688999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCC-CHHHHHHHHHHHHhcCC
Q 027511 82 GGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP 115 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~-~~~~la~~i~~ll~~~~ 115 (222)
||..|++.++..++..+ ++++++++|.+++++++
T Consensus 299 ~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 299 ITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDR 333 (358)
T ss_pred CchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcc
Confidence 99999999976666655 57999999999999988
No 50
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.87 E-value=2.8e-21 Score=174.75 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=114.2
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.|+++|+|+|+|+.+++++++++++++ +|.|+|.. ++...+|+.+|+||+||.+|+||++++||||||+|||+++.
T Consensus 575 ~pnvrLvIVGDGP~reeLe~la~eLgL--~V~FLG~~--dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~ 650 (794)
T PLN02501 575 LDGFNLDVFGNGEDAHEVQRAAKRLDL--NLNFLKGR--DHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADH 650 (794)
T ss_pred CCCeEEEEEcCCccHHHHHHHHHHcCC--EEEecCCC--CCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecC
Confidence 578999999999999999999999887 48999985 55678999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVY 143 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 143 (222)
+|. +++.++.+++...|+++++++|.++++++...... .....|||+.+++++.+.-
T Consensus 651 pG~-e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~----~a~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 651 PSN-EFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTP----EQRYNLSWEAATQRFMEYS 707 (794)
T ss_pred CCC-ceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHH----HHHhhCCHHHHHHHHHHhh
Confidence 985 44667788888889999999999999986521111 1244899999999998865
No 51
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.87 E-value=3.3e-21 Score=165.36 Aligned_cols=127 Identities=23% Similarity=0.329 Sum_probs=110.6
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCc
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGV 84 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~ 84 (222)
++|+|+|+|+..+++++ +..++|.|+|+++++++..+|++||++++||. |+||++++|||+||+|||+++.||.
T Consensus 222 ~~l~ivG~g~~~~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~ 295 (351)
T cd03804 222 KRLVVIGDGPELDRLRA-----KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGGA 295 (351)
T ss_pred CcEEEEECChhHHHHHh-----hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCCCCC
Confidence 78999999988777666 45689999999999999999999999999999 9999999999999999999999999
Q ss_pred cccccCCceEEeC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHH
Q 027511 85 PEVLPDDMVVLAE--PDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRT 139 (222)
Q Consensus 85 ~e~i~~~~~g~~~--~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 139 (222)
.|++.++.+|+.. .|+++++++|.+++++++ ....+.++++ +.|+|+++.+++
T Consensus 296 ~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 350 (351)
T cd03804 296 LETVIDGVTGILFEEQTVESLAAAVERFEKNED-FDPQAIRAHA-ERFSESRFREKI 350 (351)
T ss_pred cceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcc-cCHHHHHHHH-HhcCHHHHHHHh
Confidence 9999998777543 388999999999999875 3455566555 569999998875
No 52
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.87 E-value=1.8e-21 Score=165.38 Aligned_cols=135 Identities=24% Similarity=0.369 Sum_probs=119.4
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
|+++|+++|+|+....++ +..++|.|+|+++.+++..+|+.||++++||..|+||++++|||+||+|||+++.+
T Consensus 226 ~~~~l~i~G~~~~~~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~ 299 (364)
T cd03814 226 PPVRLVIVGDGPARARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAG 299 (364)
T ss_pred CCceEEEEeCCchHHHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCC
Confidence 689999999998776665 45678999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCceEEeCC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 83 GVPEVLPDDMVVLAEP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 83 g~~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
+..|++.++.+|+..+ |.++++++|.+++.+++ ..+..++++.+ +.|+|+.+.+++.++|+
T Consensus 300 ~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 300 GPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEA-ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred CchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHhhC
Confidence 9999999977775433 77889999999999877 56667777766 77999999999999873
No 53
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.87 E-value=2e-21 Score=169.98 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=112.1
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC-CccccHHHHHHHHhCCcEEEeC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL-TEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~-~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+|+++|+|+|+|+.. ++ ++++..++|.|+|+++ ++..+|++||++|+||. .|++|++++|||+||+|||+|+
T Consensus 257 ~p~~~l~ivG~g~~~-~~----~~l~~~~~V~~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~ 329 (397)
T TIGR03087 257 RPAAEFYIVGAKPSP-AV----RALAALPGVTVTGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASP 329 (397)
T ss_pred CCCcEEEEECCCChH-HH----HHhccCCCeEEeeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecC
Confidence 589999999999753 33 3344457899999985 68999999999999997 5999999999999999999999
Q ss_pred CCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 81 VGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 81 ~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
.++.......+.+.++..|+++++++|.++++++. ..++.++++.+.++|||+.++++++++|+
T Consensus 330 ~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 330 EAAEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred cccccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 76432222233334455799999999999999876 67889999999999999999999999874
No 54
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.87 E-value=1.8e-21 Score=174.11 Aligned_cols=139 Identities=20% Similarity=0.289 Sum_probs=115.5
Q ss_pred ceEEEEEcCCc--cHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 4 KVRFIVGGDGP--KRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 4 ~~~lvi~G~g~--~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+++|+|+|+|+ ..+++++++++++ +++.+.+..+.+++..+|++||++++||..|+||++++|||+||+|||+++.
T Consensus 320 ~~~lvi~G~g~~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~ 397 (473)
T TIGR02095 320 GGQLVVLGTGDPELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRT 397 (473)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccC
Confidence 58999999995 4567778877654 5788888888888999999999999999999999999999999999999999
Q ss_pred CCccccccCC------ceEEeC--CCHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDD------MVVLAE--PDPGDMVLAIRKAIS----LLPKIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 82 gg~~e~i~~~------~~g~~~--~~~~~la~~i~~ll~----~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
||+.|++.++ .+|+.. .|+++++++|.++++ ++. ...+.+.+...+.|||+.+++++.++|++
T Consensus 398 gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~-~~~~~~~~~~~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 398 GGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPS-LWEALQKNAMSQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred CCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 9999999987 677543 389999999999988 333 11122222335789999999999999986
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.86 E-value=5.2e-21 Score=162.52 Aligned_cols=140 Identities=26% Similarity=0.417 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.++++|+++|+|+..+.++++++++++.++|.++|+++++++..+|++||++++|+..|++|++++|||+||+|||+++.
T Consensus 231 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~ 310 (374)
T cd03817 231 EPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDA 310 (374)
T ss_pred CCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCC-CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~-~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
|+..|++.++.+|+..+ +.++++++|.++++++. +.++.++++.+.+.+ +.++++++|++
T Consensus 311 ~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 373 (374)
T cd03817 311 PGLPDLVADGENGFLFPPGDEALAEALLRLLQDPELRRRLSKNAEESAEKFS----FAKKVEKLYEE 373 (374)
T ss_pred CChhhheecCceeEEeCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc
Confidence 99999999987775544 33399999999999877 466667776665544 66677777654
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.86 E-value=4.2e-21 Score=161.75 Aligned_cols=137 Identities=26% Similarity=0.316 Sum_probs=121.7
Q ss_pred CCceEEEEEcCCccHHHHHHH-HHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEM-REKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~-~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+|+++|+++|.++........ +.+.+..++|.|+|+ .+++..+|++||++++||..|++|++++|||+||+|||+++
T Consensus 217 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~ 294 (359)
T cd03808 217 GPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATD 294 (359)
T ss_pred CCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeec--cccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEec
Confidence 589999999998877666554 677788889999999 68899999999999999999999999999999999999999
Q ss_pred CCCccccccCCceEEeCC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHH
Q 027511 81 VGGVPEVLPDDMVVLAEP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTE 140 (222)
Q Consensus 81 ~gg~~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~ 140 (222)
.++..|++.++.+|+..+ |+++++++|.+++.+++ ..++.++++.+.++|+|+.+++++.
T Consensus 295 ~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 295 VPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred CCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 999999999887775443 79999999999998877 6677888999899999999998875
No 57
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.86 E-value=5.9e-21 Score=160.18 Aligned_cols=136 Identities=24% Similarity=0.316 Sum_probs=118.2
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.|+++|+|+|+|+....++++++++++.++|.+.|. .+++..+|++||++++||..|++|++++|||+||+|||+++.
T Consensus 207 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~ 284 (348)
T cd03820 207 HPDWKLRIVGDGPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDC 284 (348)
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecC
Confidence 689999999999999999999999999999999998 689999999999999999999999999999999999999997
Q ss_pred C-CccccccCCceEEeC--CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHH
Q 027511 82 G-GVPEVLPDDMVVLAE--PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTE 140 (222)
Q Consensus 82 g-g~~e~i~~~~~g~~~--~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~ 140 (222)
+ +..+++.++.+|+.. .|+++++++|.+++++++ ..++.++ ....+.|+|+.+++++.
T Consensus 285 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 285 PTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANA-RESAERFSIENIIKQWE 347 (348)
T ss_pred CCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHH-HHHHHHhCHHHHHHHhc
Confidence 5 566677776466433 378999999999999877 4556666 45567899999998875
No 58
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.85 E-value=3.3e-21 Score=149.33 Aligned_cols=123 Identities=25% Similarity=0.431 Sum_probs=107.3
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.++++++|+|+++....+...++.+++.+++.|+|.++.+++..+|+.+|++|+||..|+||.+++|||+||+|||+++.
T Consensus 45 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~ 124 (172)
T PF00534_consen 45 NPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDI 124 (172)
T ss_dssp HTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESS
T ss_pred CCCeEEEEEcccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccceeeccc
Confidence 47899999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEe--CCCHHHHHHHHHHHHhcCC--CCCHHHHHH
Q 027511 82 GGVPEVLPDDMVVLA--EPDPGDMVLAIRKAISLLP--KIDPQVMHE 124 (222)
Q Consensus 82 gg~~e~i~~~~~g~~--~~~~~~la~~i~~ll~~~~--~~~~~~~~~ 124 (222)
|+..|++.++.+|+. ..|+++++++|.+++++++ ..++.++++
T Consensus 125 ~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 125 GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 999999999986644 3388999999999999865 344444443
No 59
>PLN02275 transferase, transferring glycosyl groups
Probab=99.85 E-value=9.7e-21 Score=164.47 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=99.3
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeC-CCChhHHHHHHHhccEEEEcCC---CccccHHHHHHHHhCCcEE
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLG-AVPHAQVRSVLISGHIFLNSSL---TEAFCIAILEAASCGLLTV 77 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g-~v~~~~~~~ll~~adv~v~~s~---~E~~g~~ilEAma~G~PvV 77 (222)
+|+++|+|+|+|+.+++++++++++++.+ |.|.+ +++++++..+|+.||++|.|+. .|++|++++||||||+|||
T Consensus 259 ~~~i~l~ivG~G~~~~~l~~~~~~~~l~~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVV 337 (371)
T PLN02275 259 YPRLLFIITGKGPQKAMYEEKISRLNLRH-VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVC 337 (371)
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHcCCCc-eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEE
Confidence 48999999999999999999999999976 77765 6999999999999999997632 4889999999999999999
Q ss_pred EeCCCCccccccCCceEEeCCCHHHHHHHHHHHH
Q 027511 78 STRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAI 111 (222)
Q Consensus 78 a~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll 111 (222)
+++.||.+|++.++.+|+..+++++++++|.+++
T Consensus 338 a~~~gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 338 AVSYSCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred EecCCChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 9999999999999999988889999999998764
No 60
>PHA01633 putative glycosyl transferase group 1
Probab=99.85 E-value=3e-20 Score=158.38 Aligned_cols=128 Identities=17% Similarity=0.142 Sum_probs=103.0
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEe---CCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEML---GAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~---g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+++++++|++ ..++++++++|.|+ |.++.+++..+|++||++|+||..|+||++++|||+||+|||+++
T Consensus 183 ~i~l~ivG~~--------~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~ 254 (335)
T PHA01633 183 KIHFFVISHK--------QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQL 254 (335)
T ss_pred cEEEEEEcHH--------HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEcc
Confidence 4678888742 23556788899998 566789999999999999999999999999999999999999999
Q ss_pred CCCccccccC------------------CceEEe--CCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCHHHHHHHH
Q 027511 81 VGGVPEVLPD------------------DMVVLA--EPDPGDMVLAIRKAISLLP-KIDPQVMHERMKKLYNWHDVAKRT 139 (222)
Q Consensus 81 ~gg~~e~i~~------------------~~~g~~--~~~~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~fs~~~~~~~~ 139 (222)
.||++|++.+ ++.|+. ..|+++++++|.++++..+ ..++.+++ ...+.|+|+.+.+++
T Consensus 255 ~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~~~~~~~~~~-~~a~~f~~~~~~~~~ 333 (335)
T PHA01633 255 MPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQDREERSMKLK-ELAKKYDIRNLYTRF 333 (335)
T ss_pred CCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccChhhhhHHHH-HHHHhcCHHHHHHHh
Confidence 9999997552 123444 3499999999999987755 33344454 556779999999988
Q ss_pred H
Q 027511 140 E 140 (222)
Q Consensus 140 ~ 140 (222)
+
T Consensus 334 ~ 334 (335)
T PHA01633 334 L 334 (335)
T ss_pred h
Confidence 6
No 61
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.85 E-value=1.4e-20 Score=168.17 Aligned_cols=139 Identities=19% Similarity=0.279 Sum_probs=115.0
Q ss_pred ceEEEEEcCCcc--HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 4 KVRFIVGGDGPK--RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 4 ~~~lvi~G~g~~--~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+++|+|+|+|+. .+.++++++++ .+++.+++..+.+++..+++.||++++||..|+||++++|||+||+|||+++.
T Consensus 325 ~~~lvi~G~g~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~ 402 (476)
T cd03791 325 GGQLVILGSGDPEYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRAT 402 (476)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcC
Confidence 489999998864 35666666665 56788877777888899999999999999999999999999999999999999
Q ss_pred CCccccccCCc------eEEeC--CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDM------VVLAE--PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 82 gg~~e~i~~~~------~g~~~--~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
||+.|++.++. +|+.. .|+++++++|.++++... ......+++...+.|||+.+++++.++|+
T Consensus 403 gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 403 GGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMAQDFSWDRSAKEYLELYR 475 (476)
T ss_pred CCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhccCCChHHHHHHHHHHHh
Confidence 99999999976 66543 389999999999997643 33334445555678999999999999996
No 62
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.84 E-value=1.3e-20 Score=160.94 Aligned_cols=132 Identities=22% Similarity=0.297 Sum_probs=113.7
Q ss_pred CCceEEEEEcCCccHH----HHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcC-CCccccHHHHHHHHhCCcE
Q 027511 2 RVKVRFIVGGDGPKRV----RLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSS-LTEAFCIAILEAASCGLLT 76 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~----~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s-~~E~~g~~ilEAma~G~Pv 76 (222)
.++++++|+|.|+... .+.+.++++++.++|.|+|+ .+++..+|++||++++|| ..|+||++++|||+||+||
T Consensus 214 ~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~Pv 291 (355)
T cd03819 214 DPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPV 291 (355)
T ss_pred CCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCE
Confidence 4789999999886543 34556778888889999999 689999999999999999 7999999999999999999
Q ss_pred EEeCCCCccccccCCceEEeC--CCHHHHHHHHHHHHh-cCC--CCCHHHHHHHHHhcCCHHHH
Q 027511 77 VSTRVGGVPEVLPDDMVVLAE--PDPGDMVLAIRKAIS-LLP--KIDPQVMHERMKKLYNWHDV 135 (222)
Q Consensus 77 Va~~~gg~~e~i~~~~~g~~~--~~~~~la~~i~~ll~-~~~--~~~~~~~~~~~~~~fs~~~~ 135 (222)
|+++.|+..|++.++.+|+.. .|+++++++|..++. +++ ..++.++++.+.++|+|+.+
T Consensus 292 I~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 292 IASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred EEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 999999999999998666543 489999999976665 444 67889999999999999864
No 63
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.84 E-value=2.8e-20 Score=163.13 Aligned_cols=150 Identities=21% Similarity=0.256 Sum_probs=129.3
Q ss_pred CCceEEEEEcCC--c--------cHHHHHHHHHHcCC-CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHH
Q 027511 2 RVKVRFIVGGDG--P--------KRVRLEEMREKHSL-QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAA 70 (222)
Q Consensus 2 ~p~~~lvi~G~g--~--------~~~~l~~~~~~~~l-~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAm 70 (222)
.++.+++++|+- + ..+++.++++++++ .+.|.|+...++.+...+++.+.+.++++..|+||++++|||
T Consensus 307 ~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAM 386 (495)
T KOG0853|consen 307 ISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAM 386 (495)
T ss_pred CCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHH
Confidence 367788899821 1 12677788999988 477888899988999999999999888777799999999999
Q ss_pred HhCCcEEEeCCCCccccccCCceEEe-CCCHH---HHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 71 SCGLLTVSTRVGGVPEVLPDDMVVLA-EPDPG---DMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 71 a~G~PvVa~~~gg~~e~i~~~~~g~~-~~~~~---~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
+||+|||||+.||+.|++.++.+||. +|+.+ .+++++.++..++. .+++.++++++.++|+|+.+.+++.++..
T Consensus 387 a~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 387 ACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERIASVLG 466 (495)
T ss_pred hcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Confidence 99999999999999999999999864 45665 69999999999998 88999999999999999999999999998
Q ss_pred HHhcCCC
Q 027511 145 RALECPN 151 (222)
Q Consensus 145 ~~~~~~~ 151 (222)
.....+.
T Consensus 467 ~~~~~~~ 473 (495)
T KOG0853|consen 467 KYLQWEK 473 (495)
T ss_pred hcCCccc
Confidence 7765443
No 64
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.83 E-value=1.6e-20 Score=159.80 Aligned_cols=137 Identities=23% Similarity=0.357 Sum_probs=116.5
Q ss_pred CceEEEEEcCCccH-HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 3 VKVRFIVGGDGPKR-VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 3 p~~~lvi~G~g~~~-~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
++++|+++|.++.. ....+..++.+..++|.++|+++.+++..+++++|++++||..|++|++++|||++|+|||+++.
T Consensus 225 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 304 (365)
T cd03809 225 PDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNI 304 (365)
T ss_pred CCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCC
Confidence 46899999976443 33444446788889999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTE 140 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~ 140 (222)
|+..|++.++...+...|+++++++|.+++++++ ..++.+++ ...+.|+|+.+++++.
T Consensus 305 ~~~~e~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 305 SSLPEVAGDAALYFDPLDPEALAAAIERLLEDPALREELRERGL-ARAKRFSWEKTARRTL 364 (365)
T ss_pred CCccceecCceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHhCCHHHHHHHHh
Confidence 9999999776655666689999999999998877 45556665 5567899999999875
No 65
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.83 E-value=5.4e-20 Score=156.65 Aligned_cols=136 Identities=21% Similarity=0.299 Sum_probs=121.3
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccc-----cHHHHHHHHhCCcEE
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAF-----CIAILEAASCGLLTV 77 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~-----g~~ilEAma~G~PvV 77 (222)
|+++|+++|+|+....+.+.+...++ ++|.++|+++++++..+|+.||++++|+..|++ +++++|||+||+|||
T Consensus 249 ~~~~l~i~G~~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi 327 (394)
T cd03794 249 PDIRFLIVGDGPEKEELKELAKALGL-DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVL 327 (394)
T ss_pred CCeEEEEeCCcccHHHHHHHHHHcCC-CcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEE
Confidence 58999999999999888888777666 579999999999999999999999999998875 888999999999999
Q ss_pred EeCCCCccccccCCceEEeC--CCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHH
Q 027511 78 STRVGGVPEVLPDDMVVLAE--PDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRT 139 (222)
Q Consensus 78 a~~~gg~~e~i~~~~~g~~~--~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~ 139 (222)
+++.++..+++.++.+|+.. .|+++++++|.++++++. ..++.++++.+.+.|+|+.+++++
T Consensus 328 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 328 ASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred EecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 99999999999987666443 389999999999998876 677888999999899999999876
No 66
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.83 E-value=4.7e-20 Score=156.21 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=112.4
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC-CccccHHHHHHHHhCCcEEEeCC
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL-TEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~-~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
++++|+++|.++......... +..++|.++|+++.+++..++++||++++||. .|++|++++|||+||+|||+++.
T Consensus 219 ~~~~l~i~G~~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~ 295 (359)
T cd03823 219 GDIELVIVGNGLELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDI 295 (359)
T ss_pred cCcEEEEEcCchhhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCC
Confidence 589999999987766554443 56678999999999999999999999999998 79999999999999999999999
Q ss_pred CCccccccCCceEEe--CCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 82 GGVPEVLPDDMVVLA--EPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 82 gg~~e~i~~~~~g~~--~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
|+..|++.++.+|+. ..|+++++++|.++++++. ..++.+++ +.++.+.+++++.++|+
T Consensus 296 ~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 358 (359)
T cd03823 296 GGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIE----PPRSIEDQAEEYLKLYR 358 (359)
T ss_pred CCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHH----HhhhHHHHHHHHHHHhh
Confidence 999999999866643 3378999999999999765 33344443 33444889999988885
No 67
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.80 E-value=3.8e-19 Score=149.24 Aligned_cols=128 Identities=30% Similarity=0.378 Sum_probs=107.0
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.++++|+++|.|+....++++++++++.++|.++|++ +++..+++.||++++||..|++|++++|||++|+|||+++.
T Consensus 218 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~ 295 (353)
T cd03811 218 GPDARLVILGDGPLREELEALAKELGLADRVHFLGFQ--SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDC 295 (353)
T ss_pred CCCceEEEEcCCccHHHHHHHHHhcCCCccEEEeccc--CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCC
Confidence 4689999999999999999999999999999999995 57889999999999999999999999999999999999999
Q ss_pred CCccccccCCceEEeCC--CHHHH---HHHHHHHHhcCC--CCCHHHHHHHHHhcCC
Q 027511 82 GGVPEVLPDDMVVLAEP--DPGDM---VLAIRKAISLLP--KIDPQVMHERMKKLYN 131 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~--~~~~l---a~~i~~ll~~~~--~~~~~~~~~~~~~~fs 131 (222)
|+..|++.++.+|+..+ +++++ ++++..+.++++ ..++.++++.+.++|+
T Consensus 296 ~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 296 PGPREILEDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred CChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 99999999998776443 67777 455555555544 3344446666666664
No 68
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.74 E-value=2.8e-17 Score=142.86 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCC-----ccccHHHHHHHHhCCcE
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLT-----EAFCIAILEAASCGLLT 76 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~-----E~~g~~ilEAma~G~Pv 76 (222)
+|+++|+++|+|+.......+ ...+||+|+|.++++++..+++.+|+++.|+.. +++|++++||||||+||
T Consensus 230 ~p~~~~vliG~~~~~~~~~~~----~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PV 305 (373)
T cd04950 230 RPDWSFVLIGPVDVSIDPSAL----LRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPV 305 (373)
T ss_pred CCCCEEEEECCCcCccChhHh----ccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCE
Confidence 689999999988333222221 224689999999999999999999999999863 46899999999999999
Q ss_pred EEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 77 VSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 77 Va~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
|+++.++..+... ...+..+|+++++++|.+++............+ ..+.|||+..++++.+.+.+
T Consensus 306 Vat~~~~~~~~~~--~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 306 VATPLPEVRRYED--EVVLIADDPEEFVAAIEKALLEDGPARERRRLR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred EecCcHHHHhhcC--cEEEeCCCHHHHHHHHHHHHhcCCchHHHHHHH-HHHHCCHHHHHHHHHHHHHh
Confidence 9998765544321 234556689999999999877654222222222 67889999999999966543
No 69
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.72 E-value=9.6e-17 Score=142.71 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=106.6
Q ss_pred eEEEEE-----cCCccHHHHHHHHHHc--------CC---CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHH
Q 027511 5 VRFIVG-----GDGPKRVRLEEMREKH--------SL---QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE 68 (222)
Q Consensus 5 ~~lvi~-----G~g~~~~~l~~~~~~~--------~l---~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE 68 (222)
+.|+++ |+++.+..+++.++++ +. .+.+.+.|.++.+++..+|+.||++|.||..|+||++++|
T Consensus 295 v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lE 374 (456)
T TIGR02400 295 VVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKE 374 (456)
T ss_pred eEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHH
Confidence 567777 4556666676666554 11 1234456788999999999999999999999999999999
Q ss_pred HHHhCCc----EEEeCCCCccccccCCceEEeCC-CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCHHHHHHHHH
Q 027511 69 AASCGLL----TVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP---KIDPQVMHERMKKLYNWHDVAKRTE 140 (222)
Q Consensus 69 Ama~G~P----vVa~~~gg~~e~i~~~~~g~~~~-~~~~la~~i~~ll~~~~---~~~~~~~~~~~~~~fs~~~~~~~~~ 140 (222)
|||||+| +|+|+.+|..+.+. + ..+++| |+++++++|.++++++. +....+.++++.+ |++...++++.
T Consensus 375 amA~g~P~~g~vVlS~~~G~~~~l~-~-gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-~~~~~W~~~~l 451 (456)
T TIGR02400 375 YVAAQDPKDGVLILSEFAGAAQELN-G-ALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRK-NDVQRWREDFL 451 (456)
T ss_pred HHHhcCCCCceEEEeCCCCChHHhC-C-cEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHH
Confidence 9999999 99999998888885 3 334445 99999999999999765 4556666777654 99999999877
Q ss_pred HHH
Q 027511 141 IVY 143 (222)
Q Consensus 141 ~~~ 143 (222)
+-+
T Consensus 452 ~~l 454 (456)
T TIGR02400 452 SDL 454 (456)
T ss_pred HHh
Confidence 543
No 70
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=3e-16 Score=130.48 Aligned_cols=145 Identities=30% Similarity=0.569 Sum_probs=123.9
Q ss_pred ceEEEEEcCCcc-HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 4 KVRFIVGGDGPK-RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 4 ~~~lvi~G~g~~-~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
+++++++|.++. ...+..++++++..++|.|+|.++.+++..+++.+|++++||..|+||++++|||++|+|||+++.+
T Consensus 230 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~ 309 (381)
T COG0438 230 DIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG 309 (381)
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCC
Confidence 478999999887 3677778888888889999999987888889999999999999999999999999999999999999
Q ss_pred CccccccCCceE-EeCC-CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 83 GVPEVLPDDMVV-LAEP-DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 83 g~~e~i~~~~~g-~~~~-~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
+..+++.++..| +..+ +.+++++++..++++.. +......++.+...|+|+.+.+++.+++.....
T Consensus 310 ~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 310 GIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred ChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 999999998533 3443 58999999999998874 334444566666899999999999999987754
No 71
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.71 E-value=3.6e-17 Score=144.37 Aligned_cols=143 Identities=17% Similarity=0.113 Sum_probs=111.0
Q ss_pred CCceEEEEEcCCccH-HHHHHHHHHcCCCCcEEEeCCC------------ChhHHHHHHHhccEE-EEcCCCccccHHHH
Q 027511 2 RVKVRFIVGGDGPKR-VRLEEMREKHSLQDRVEMLGAV------------PHAQVRSVLISGHIF-LNSSLTEAFCIAIL 67 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~-~~l~~~~~~~~l~~~V~~~g~v------------~~~~~~~ll~~adv~-v~~s~~E~~g~~il 67 (222)
+|+++|+|+|+|+.+ ++++++++++++.. +.+.|.. +.+++..+|+.||++ +.+|..|++|.+++
T Consensus 260 ~~~~~liivG~g~~r~~~l~~~~~~~gl~~-~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~l 338 (425)
T PRK05749 260 FPNLLLILVPRHPERFKEVEELLKKAGLSY-VRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPL 338 (425)
T ss_pred CCCcEEEEcCCChhhHHHHHHHHHhCCCcE-EEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHH
Confidence 689999999999987 78999999988752 3333311 146899999999995 55777899999999
Q ss_pred HHHHhCCcEEEeCC-CCcccccc---CCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHH
Q 027511 68 EAASCGLLTVSTRV-GGVPEVLP---DDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEI 141 (222)
Q Consensus 68 EAma~G~PvVa~~~-gg~~e~i~---~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~ 141 (222)
|||+||+|||+++. ++..|+.. +++.++...|+++++++|.+++++++ ..++.++++.+.++. ..++++.+
T Consensus 339 EAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~---~~~~~~~~ 415 (425)
T PRK05749 339 EPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQNQ---GALQRTLQ 415 (425)
T ss_pred HHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCc---cHHHHHHH
Confidence 99999999998764 55555543 34445566799999999999999876 678888888887763 56677777
Q ss_pred HHHHHhc
Q 027511 142 VYDRALE 148 (222)
Q Consensus 142 ~~~~~~~ 148 (222)
++...+.
T Consensus 416 ~l~~~l~ 422 (425)
T PRK05749 416 LLEPYLP 422 (425)
T ss_pred HHHHhcc
Confidence 7776544
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.69 E-value=1.2e-16 Score=142.62 Aligned_cols=135 Identities=15% Similarity=0.182 Sum_probs=101.6
Q ss_pred eEEEEEcC-----CccHHHHHHHHH----HcC-------CCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHH
Q 027511 5 VRFIVGGD-----GPKRVRLEEMRE----KHS-------LQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE 68 (222)
Q Consensus 5 ~~lvi~G~-----g~~~~~l~~~~~----~~~-------l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE 68 (222)
++|+++|. |+...++++.++ +.+ ..+.+.+.|.++.+++..+|+.||++|+||..|+||++++|
T Consensus 300 v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lE 379 (460)
T cd03788 300 VVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKE 379 (460)
T ss_pred EEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccce
Confidence 67888864 344444444433 322 22333456889999999999999999999999999999999
Q ss_pred HHHhCCc----EEEeCCCCccccccCCceEEeCC-CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCHHHHHHHHH
Q 027511 69 AASCGLL----TVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP---KIDPQVMHERMKKLYNWHDVAKRTE 140 (222)
Q Consensus 69 Ama~G~P----vVa~~~gg~~e~i~~~~~g~~~~-~~~~la~~i~~ll~~~~---~~~~~~~~~~~~~~fs~~~~~~~~~ 140 (222)
||+||+| ||+++.+|..+.. .+. .++.| |+++++++|.++++++. +.+..++++.+ ..|+++..++++.
T Consensus 380 Ama~g~p~~g~vV~S~~~G~~~~~-~~g-~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v-~~~~~~~w~~~~l 456 (460)
T cd03788 380 YVACQDDDPGVLILSEFAGAAEEL-SGA-LLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYV-RTHDVQAWANSFL 456 (460)
T ss_pred eEEEecCCCceEEEeccccchhhc-CCC-EEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence 9999999 9999988888773 222 34444 99999999999999864 44555566665 5699999998876
Q ss_pred HH
Q 027511 141 IV 142 (222)
Q Consensus 141 ~~ 142 (222)
+-
T Consensus 457 ~~ 458 (460)
T cd03788 457 DD 458 (460)
T ss_pred Hh
Confidence 53
No 73
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.62 E-value=9.9e-15 Score=121.78 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=125.2
Q ss_pred CceEEEEEcCCc---cH---HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcE
Q 027511 3 VKVRFIVGGDGP---KR---VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLT 76 (222)
Q Consensus 3 p~~~lvi~G~g~---~~---~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~Pv 76 (222)
++++|+++|+-. +. +.++.+++++.++++|.|.-.+|.+++..+|+.|.+.|++...|+||+.++|+||+|+-+
T Consensus 304 ~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIp 383 (465)
T KOG1387|consen 304 SPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIP 383 (465)
T ss_pred CCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceE
Confidence 678999999532 22 456677899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcc-ccccCC---ceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Q 027511 77 VSTRVGGVP-EVLPDD---MVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALECP 150 (222)
Q Consensus 77 Va~~~gg~~-e~i~~~---~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 150 (222)
|+.+.||+. +++.+. .+||..++.++.++++.+++.... +.++++..+....+|+-..+.+.+.+.+..++.++
T Consensus 384 i~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 384 IVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred EEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhccc
Confidence 999998764 555543 568999999999999999998644 55566666666678999999999999998887654
No 74
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.61 E-value=6.7e-15 Score=117.07 Aligned_cols=95 Identities=37% Similarity=0.667 Sum_probs=84.3
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC-ChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV-PHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v-~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
.|+++++++|.+........++.+++..++|.++|.+ +.+++..++++||++++||..|++|++++|||+||+|+|+++
T Consensus 133 ~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~ 212 (229)
T cd01635 133 GPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATD 212 (229)
T ss_pred CCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcC
Confidence 4799999999998888888777888888999999998 455666666669999999999999999999999999999999
Q ss_pred CCCccccccCCceEEe
Q 027511 81 VGGVPEVLPDDMVVLA 96 (222)
Q Consensus 81 ~gg~~e~i~~~~~g~~ 96 (222)
.++..|++.++.+|+.
T Consensus 213 ~~~~~e~i~~~~~g~~ 228 (229)
T cd01635 213 VGGPPEIVEDGLTGLL 228 (229)
T ss_pred CCCcceEEECCCceEE
Confidence 9999999988877764
No 75
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.61 E-value=5.4e-15 Score=139.18 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=106.3
Q ss_pred cCCccHHHHHHHHHHcC--CCCc--------EE-EeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCc----
Q 027511 11 GDGPKRVRLEEMREKHS--LQDR--------VE-MLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLL---- 75 (222)
Q Consensus 11 G~g~~~~~l~~~~~~~~--l~~~--------V~-~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~P---- 75 (222)
|+++.++++++.++++. +..+ |+ +.+.++.+++..+|+.||+||+||..|++|++++||||||+|
T Consensus 326 ~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gv 405 (797)
T PLN03063 326 NDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGV 405 (797)
T ss_pred CchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCC
Confidence 35566677777776653 2221 33 345889999999999999999999999999999999999999
Q ss_pred EEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 76 TVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP---KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 76 vVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~---~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
+|.|..+|..+.+..+...+.+.|+++++++|.++++.+. +......++++ ..++|...++.+.+.++++..
T Consensus 406 lVlSe~~G~~~~l~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v-~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 406 LVLSEFAGAGQSLGAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQYV-KTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred EEeeCCcCchhhhcCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-hhCCHHHHHHHHHHHHHHHhh
Confidence 9999999999987444333334499999999999999654 33344455554 569999999999998887764
No 76
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.60 E-value=1.6e-15 Score=112.85 Aligned_cols=102 Identities=25% Similarity=0.407 Sum_probs=74.0
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC-CccccHHHHHHHHhCCcEEEeC
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL-TEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~-~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+|+++|+|+|.++. +++++ ..++|+++|++ +++.++++++|+++.|+. .++++.+++|||++|+|||+++
T Consensus 32 ~p~~~l~i~G~~~~--~l~~~-----~~~~v~~~g~~--~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~ 102 (135)
T PF13692_consen 32 HPDIELIIIGNGPD--ELKRL-----RRPNVRFHGFV--EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASD 102 (135)
T ss_dssp STTEEEEEECESS---HHCCH-----HHCTEEEE-S---HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEH
T ss_pred CcCEEEEEEeCCHH--HHHHh-----cCCCEEEcCCH--HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECC
Confidence 68999999999876 24444 23589999999 689999999999999986 6789999999999999999999
Q ss_pred CCCcccccc-CCceEEeCCCHHHHHHHHHHHHhc
Q 027511 81 VGGVPEVLP-DDMVVLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 81 ~gg~~e~i~-~~~~g~~~~~~~~la~~i~~ll~~ 113 (222)
. +..++.. ++..++...|+++++++|.++++|
T Consensus 103 ~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 103 N-GAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp H-HCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred c-chhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 9 5666665 344455667999999999999875
No 77
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.59 E-value=3.8e-15 Score=133.41 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=85.6
Q ss_pred hhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCc----cccccCC--ceEEeC--------CCHHHHHH
Q 027511 40 HAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGV----PEVLPDD--MVVLAE--------PDPGDMVL 105 (222)
Q Consensus 40 ~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~----~e~i~~~--~~g~~~--------~~~~~la~ 105 (222)
..++.++++.||++|+||.+|+||++++||||||+|||+|+.+|+ .|++.++ .++++. .+++++++
T Consensus 465 g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 465 GLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred CcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999 5555543 233443 14688888
Q ss_pred HHHHHHhcCC-CCCH-HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 106 AIRKAISLLP-KIDP-QVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 106 ~i~~ll~~~~-~~~~-~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
+|.++++.+. +.+. ....++..+.|+|+.++..|.+.|+-++.
T Consensus 545 ~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 545 YMYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 8888885543 2222 23344677889999999999999988764
No 78
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.58 E-value=6.7e-15 Score=138.01 Aligned_cols=141 Identities=21% Similarity=0.315 Sum_probs=109.0
Q ss_pred ceEEEEEc----CC-ccHHHHHHHHHHc--------C---CCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHH
Q 027511 4 KVRFIVGG----DG-PKRVRLEEMREKH--------S---LQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAIL 67 (222)
Q Consensus 4 ~~~lvi~G----~g-~~~~~l~~~~~~~--------~---l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~il 67 (222)
+++|+++| +| +.+.++++.++++ + ....+.+.|.++.+++..+|+.||+++.||..|+||++++
T Consensus 300 ~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~ 379 (726)
T PRK14501 300 KVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAK 379 (726)
T ss_pred CEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccc
Confidence 37888887 33 4444555544432 1 1223557899999999999999999999999999999999
Q ss_pred HHHHh-----CCcEEEeCCCCccccccCCceEEeCC-CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCHHHHHHH
Q 027511 68 EAASC-----GLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP---KIDPQVMHERMKKLYNWHDVAKR 138 (222)
Q Consensus 68 EAma~-----G~PvVa~~~gg~~e~i~~~~~g~~~~-~~~~la~~i~~ll~~~~---~~~~~~~~~~~~~~fs~~~~~~~ 138 (222)
|||+| |.||++...|+..++.. ..+++| |+++++++|.+++.++. .....++++.+ ..|||+..+++
T Consensus 380 Eama~~~~~~g~~vls~~~G~~~~l~~---~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v-~~~~~~~w~~~ 455 (726)
T PRK14501 380 EYVASRTDGDGVLILSEMAGAAAELAE---ALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERL-RRYDVHKWASD 455 (726)
T ss_pred eEEEEcCCCCceEEEecccchhHHhCc---CeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 99999 55777877888888752 234455 99999999999998764 33445667776 57999999999
Q ss_pred HHHHHHHHhc
Q 027511 139 TEIVYDRALE 148 (222)
Q Consensus 139 ~~~~~~~~~~ 148 (222)
+.+.|+++..
T Consensus 456 ~l~~l~~~~~ 465 (726)
T PRK14501 456 FLDELREAAE 465 (726)
T ss_pred HHHHHHHHHh
Confidence 9999998854
No 79
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.53 E-value=7.9e-14 Score=125.72 Aligned_cols=138 Identities=10% Similarity=0.084 Sum_probs=119.6
Q ss_pred CCCceEEEEEcCCccH---HHHHHHHHHcCCC-----------------------------CcEEEeCCCChhHHHHHHH
Q 027511 1 MRVKVRFIVGGDGPKR---VRLEEMREKHSLQ-----------------------------DRVEMLGAVPHAQVRSVLI 48 (222)
Q Consensus 1 ~~p~~~lvi~G~g~~~---~~l~~~~~~~~l~-----------------------------~~V~~~g~v~~~~~~~ll~ 48 (222)
++|+++|.+.|.|... ..++++++++++. ++|.|.|..+..++.+.|.
T Consensus 348 ~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~ 427 (519)
T TIGR03713 348 KNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTLTNEEDLISALD 427 (519)
T ss_pred hCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEecCCHHHHHHHHh
Confidence 4799999999976533 6777777777666 7999999988889999999
Q ss_pred hccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHH
Q 027511 49 SGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERM 126 (222)
Q Consensus 49 ~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~ 126 (222)
.+.++|.+|..|+|+ +.+||++.|+|+| .-|..++|.++.+|++.+|..++++++..++.++. +.....+.+.+
T Consensus 428 ~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~li~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~ 503 (519)
T TIGR03713 428 KLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYIIDDISELLKALDYYLDNLKNWNYSLAYSIKLI 503 (519)
T ss_pred hheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEEeCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999 55678999999999988999999999999999986 55666666555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 027511 127 KKLYNWHDVAKRTEIVY 143 (222)
Q Consensus 127 ~~~fs~~~~~~~~~~~~ 143 (222)
+.||-+.+.+++.+++
T Consensus 504 -~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 504 -DDYSSENIIERLNELI 519 (519)
T ss_pred -HHhhHHHHHHHHHhhC
Confidence 7799999999988753
No 80
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.52 E-value=1e-13 Score=120.60 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=101.7
Q ss_pred CCceEEEEE-cCC-ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 2 RVKVRFIVG-GDG-PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 2 ~p~~~lvi~-G~g-~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
.|+++++++ |.+ +.++.+++++++++ ++|+|+|++ +++..+|+.||++|. ++.|++++|||+||+|||++
T Consensus 228 ~~~~~~viv~G~~~~~~~~l~~~~~~~~--~~v~~~g~~--~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~ 299 (380)
T PRK13609 228 VPDLQVVVVCGKNEALKQSLEDLQETNP--DALKVFGYV--ENIDELFRVTSCMIT----KPGGITLSEAAALGVPVILY 299 (380)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHhcCC--CcEEEEech--hhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEEC
Confidence 368898876 433 34577777776654 689999997 568999999999984 56699999999999999997
Q ss_pred C-CCCcc----ccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 027511 80 R-VGGVP----EVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRA 146 (222)
Q Consensus 80 ~-~gg~~----e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 146 (222)
+ .+|.. +++.+.+.++...|+++++++|.+++++++ ..++.+++ ...+.++++.+++.+.+.+...
T Consensus 300 ~~~~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~-~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 300 KPVPGQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMK-SLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred CCCCCcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHH-HhCCCchHHHHHHHHHHhhhhh
Confidence 6 45432 244444555667799999999999999876 44444444 3456689999999988877543
No 81
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.51 E-value=6.8e-14 Score=119.96 Aligned_cols=115 Identities=8% Similarity=-0.015 Sum_probs=90.8
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC-----------CccccHHHHHHH
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL-----------TEAFCIAILEAA 70 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~-----------~E~~g~~ilEAm 70 (222)
.|+++|+|+|+|+... ...++|.|+|+++.+++..+|+. ++.+.+.. .-.+|.++.|+|
T Consensus 188 ~~~~~l~i~G~g~~~~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ym 257 (333)
T PRK09814 188 SQGIKLTVFGPNPEDL---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYL 257 (333)
T ss_pred CCCCeEEEECCCcccc---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHH
Confidence 4789999999998654 34578999999999999999998 65443321 236789999999
Q ss_pred HhCCcEEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 027511 71 SCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLPKIDPQVMHERM 126 (222)
Q Consensus 71 a~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~~~~~~~~~~~~ 126 (222)
|||+|||+++.++..+++.++..|++.++.+++++++.++.+.....++.++++..
T Consensus 258 A~G~PVI~~~~~~~~~~V~~~~~G~~v~~~~el~~~l~~~~~~~~~~m~~n~~~~~ 313 (333)
T PRK09814 258 AAGLPVIVWSKAAIADFIVENGLGFVVDSLEELPEIIDNITEEEYQEMVENVKKIS 313 (333)
T ss_pred HCCCCEEECCCccHHHHHHhCCceEEeCCHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888899999998864322144555555443
No 82
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=7e-13 Score=117.89 Aligned_cols=145 Identities=20% Similarity=0.279 Sum_probs=115.3
Q ss_pred eEEEEEcCCcc--HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 5 VRFIVGGDGPK--RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 5 ~~lvi~G~g~~--~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
++++|.|.|+. ...+..+++++. +++...-..+..-...++..+|+++.||++|+||++-++||.+|+++|+..+|
T Consensus 324 ~~~vilG~gd~~le~~~~~la~~~~--~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tG 401 (487)
T COG0297 324 WQLVLLGTGDPELEEALRALASRHP--GRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETG 401 (487)
T ss_pred ceEEEEecCcHHHHHHHHHHHHhcC--ceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccC
Confidence 78999999832 245555666654 36777666667778899999999999999999999999999999999999999
Q ss_pred CccccccC--------CceE--EeCCCHHHHHHHHHHHHhcCC-CCC--HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Q 027511 83 GVPEVLPD--------DMVV--LAEPDPGDMVLAIRKAISLLP-KID--PQVMHERMKKLYNWHDVAKRTEIVYDRALEC 149 (222)
Q Consensus 83 g~~e~i~~--------~~~g--~~~~~~~~la~~i~~ll~~~~-~~~--~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 149 (222)
|++|+|.+ ..+| |..+++++++.+|.+++.-.. ..+ ..-........|+|+..+.++.++|+.+++.
T Consensus 402 GLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~~~~~ 481 (487)
T COG0297 402 GLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYKPLLSK 481 (487)
T ss_pred CccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHHHHhcc
Confidence 99999986 2445 566699999999999998765 333 2222233335899999999999999999875
Q ss_pred CC
Q 027511 150 PN 151 (222)
Q Consensus 150 ~~ 151 (222)
+.
T Consensus 482 ~~ 483 (487)
T COG0297 482 PF 483 (487)
T ss_pred cc
Confidence 43
No 83
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.50 E-value=4.7e-14 Score=98.55 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=82.7
Q ss_pred EEEEcCCCccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhc
Q 027511 52 IFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKL 129 (222)
Q Consensus 52 v~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~ 129 (222)
++++|+...+++.+++|+||||+|||+.+.+++.+++.++..++...|++++.+++..+++++. +.+..++++.+.++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKR 80 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999888877799999999999999987 78899999999999
Q ss_pred CCHHHHHHHHH
Q 027511 130 YNWHDVAKRTE 140 (222)
Q Consensus 130 fs~~~~~~~~~ 140 (222)
|+|+..++++.
T Consensus 81 ~t~~~~~~~il 91 (92)
T PF13524_consen 81 HTWEHRAEQIL 91 (92)
T ss_pred CCHHHHHHHHH
Confidence 99999999875
No 84
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.49 E-value=3.2e-13 Score=118.20 Aligned_cols=138 Identities=10% Similarity=0.084 Sum_probs=102.4
Q ss_pred CCceEEEEE-cCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 2 RVKVRFIVG-GDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 2 ~p~~~lvi~-G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
.++++++++ |.+. +..+++.+.++..++|.++|++ +++.++|+.||++|. ++.|+++.|||++|+|+|+++
T Consensus 229 ~~~~~~vvv~G~~~--~l~~~l~~~~~~~~~v~~~G~~--~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~ 300 (391)
T PRK13608 229 SANAQVVMICGKSK--ELKRSLTAKFKSNENVLILGYT--KHMNEWMASSQLMIT----KPGGITISEGLARCIPMIFLN 300 (391)
T ss_pred CCCceEEEEcCCCH--HHHHHHHHHhccCCCeEEEecc--chHHHHHHhhhEEEe----CCchHHHHHHHHhCCCEEECC
Confidence 367888666 4432 2233344444555689999997 689999999999995 457899999999999999986
Q ss_pred C-CC----ccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 81 V-GG----VPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 81 ~-gg----~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
. +| ...++.+.+.++...|+++++++|.+++++++ ..++.++++. .+.|+++.+++.+.+++..+.+
T Consensus 301 ~~pgqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~-~~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 301 PAPGQELENALYFEEKGFGKIADTPEEAIKIVASLTNGNEQLTNMISTMEQD-KIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred CCCCcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhhhhhh
Confidence 4 33 22244455667777899999999999998876 4566666654 4569999999999998875543
No 85
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.45 E-value=6e-13 Score=115.22 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=86.9
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe-C
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST-R 80 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~-~ 80 (222)
+|++++++.|.+.. ...+.+.+.++..++|.|+|.++..++..+++.+|+++.+| |..++|||+||+|||++ +
T Consensus 228 ~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~~~ 301 (365)
T TIGR00236 228 FEDVQIVYPVHLNP-VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLVLRD 301 (365)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEECCC
Confidence 57889988864322 22223444456667899999999999999999999999877 56789999999999995 7
Q ss_pred CCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC
Q 027511 81 VGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP 115 (222)
Q Consensus 81 ~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~ 115 (222)
.|+.+|++..+.++++..|++++++++.++++++.
T Consensus 302 ~~~~~e~~~~g~~~lv~~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 302 TTERPETVEAGTNKLVGTDKENITKAAKRLLTDPD 336 (365)
T ss_pred CCCChHHHhcCceEEeCCCHHHHHHHHHHHHhChH
Confidence 78899999877777776799999999999998754
No 86
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.44 E-value=1e-12 Score=114.69 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=88.1
Q ss_pred CceE-EEEEcCCcc-HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 3 VKVR-FIVGGDGPK-RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 3 p~~~-lvi~G~g~~-~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
++.+ ++++|+++. ++.+++. ....+|.|+|++ +++.++|+.||++|.++ .|++++|||+||+|+|+++
T Consensus 240 ~~~~~~vi~G~~~~~~~~L~~~----~~~~~v~~~G~~--~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~PvI~~~ 309 (382)
T PLN02605 240 PIGQVVVICGRNKKLQSKLESR----DWKIPVKVRGFV--TNMEEWMGACDCIITKA----GPGTIAEALIRGLPIILNG 309 (382)
T ss_pred CCceEEEEECCCHHHHHHHHhh----cccCCeEEEecc--ccHHHHHHhCCEEEECC----CcchHHHHHHcCCCEEEec
Confidence 5565 667787632 3334332 334579999998 57999999999999754 4789999999999999998
Q ss_pred C------CCccccccCCceEEeCCCHHHHHHHHHHHHhc-CC--CCCHHHHHHHHHhcCCHHHHHHHHHH
Q 027511 81 V------GGVPEVLPDDMVVLAEPDPGDMVLAIRKAISL-LP--KIDPQVMHERMKKLYNWHDVAKRTEI 141 (222)
Q Consensus 81 ~------gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~-~~--~~~~~~~~~~~~~~fs~~~~~~~~~~ 141 (222)
. |+. +.+.+++.++...|+++++++|.+++++ ++ +.++.++++. ....+.+.+++.+.+
T Consensus 310 ~~pgqe~gn~-~~i~~~g~g~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~-~~~~a~~~i~~~l~~ 377 (382)
T PLN02605 310 YIPGQEEGNV-PYVVDNGFGAFSESPKEIARIVAEWFGDKSDELEAMSENALKL-ARPEAVFDIVHDLHE 377 (382)
T ss_pred CCCccchhhH-HHHHhCCceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCchHHHHHHHHHH
Confidence 4 444 3344455566668999999999999987 44 3444444433 344555666655543
No 87
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.39 E-value=1.3e-12 Score=112.00 Aligned_cols=123 Identities=11% Similarity=0.103 Sum_probs=89.3
Q ss_pred CceE-EEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 3 VKVR-FIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 3 p~~~-lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
++++ ++++|+| ..+++++.++++ .++|.+.|++ +++..+|+.||++|.++. +++++|||++|+|||+++.
T Consensus 210 ~~~~~~~i~G~g-~~~~l~~~~~~~--~~~v~~~g~~--~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~ 280 (350)
T cd03785 210 KRLQVIHQTGKG-DLEEVKKAYEEL--GVNYEVFPFI--DDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPL 280 (350)
T ss_pred cCeEEEEEcCCc-cHHHHHHHHhcc--CCCeEEeehh--hhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeec
Confidence 4555 4577888 667888888776 4789999997 899999999999998662 6899999999999999876
Q ss_pred CC--------ccccccCCceEEe-CC---CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHH
Q 027511 82 GG--------VPEVLPDDMVVLA-EP---DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDV 135 (222)
Q Consensus 82 gg--------~~e~i~~~~~g~~-~~---~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~ 135 (222)
++ ..+.+.++..|+. .+ |+++++++|.+++++++ +.++.++++.+ +.+.-+++
T Consensus 281 ~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~i 347 (350)
T cd03785 281 PYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLA-RPDAAERI 347 (350)
T ss_pred CCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 54 2355555555543 32 79999999999998755 44455554443 23443333
No 88
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.34 E-value=9.4e-12 Score=107.29 Aligned_cols=129 Identities=12% Similarity=0.107 Sum_probs=96.5
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCc
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGV 84 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~ 84 (222)
..++++|+|+. +.+.+..+ +++. |.+.|++ +++.++|+.||+++.++. +++++|||++|+|+|++..++.
T Consensus 214 ~~~~~~G~g~~-~~~~~~~~-~~~~--v~~~g~~--~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~~~~~~ 283 (357)
T PRK00726 214 QVIHQTGKGDL-EEVRAAYA-AGIN--AEVVPFI--DDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILVPLPHA 283 (357)
T ss_pred EEEEEcCCCcH-HHHHHHhh-cCCc--EEEeehH--hhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEecCCCC
Confidence 45778899875 44444445 6663 9999997 789999999999998662 6899999999999999876532
Q ss_pred --------cccccCCceEE-eCC-C--HHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 027511 85 --------PEVLPDDMVVL-AEP-D--PGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 85 --------~e~i~~~~~g~-~~~-~--~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 144 (222)
.+.+.++..|+ +.+ | +++++++|.++++++. +.++.++++. .+.++.+.+++.+.++.+
T Consensus 284 ~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 284 ADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARAL-GKPDAAERLADLIEELAR 356 (357)
T ss_pred CcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHhh
Confidence 24555555554 333 4 8999999999999876 4556666555 467888888888777653
No 89
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.34 E-value=2.6e-11 Score=108.19 Aligned_cols=135 Identities=15% Similarity=0.172 Sum_probs=102.5
Q ss_pred ceEEEEEcCCc---------cHHHHHHHHHHc-------CCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHH
Q 027511 4 KVRFIVGGDGP---------KRVRLEEMREKH-------SLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAIL 67 (222)
Q Consensus 4 ~~~lvi~G~g~---------~~~~l~~~~~~~-------~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~il 67 (222)
+++|+++|.+. .+.++++++.+. +..+.+.+.+.++.+++..+|+.||+++.||..|+++++..
T Consensus 320 kv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~ 399 (487)
T TIGR02398 320 KVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAK 399 (487)
T ss_pred ceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchh
Confidence 47899998652 234555555553 44566788999999999999999999999999999999999
Q ss_pred HHHHhCC----cEEEeCCCCccccccCCceEEeCC-CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCHHHHHHHH
Q 027511 68 EAASCGL----LTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP---KIDPQVMHERMKKLYNWHDVAKRT 139 (222)
Q Consensus 68 EAma~G~----PvVa~~~gg~~e~i~~~~~g~~~~-~~~~la~~i~~ll~~~~---~~~~~~~~~~~~~~fs~~~~~~~~ 139 (222)
|+++|+. |+|.|..+|..+.+. +. .++.| |+++++++|.++++.+. +......++.+ ..++....++.+
T Consensus 400 Eyva~~~~~~GvLILSefaGaa~~l~-~A-llVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v-~~~d~~~W~~~f 476 (487)
T TIGR02398 400 EYVAAQGLLDGVLVLSEFAGAAVELK-GA-LLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAV-NYYDVQRWADEF 476 (487)
T ss_pred hHHhhhcCCCCCEEEeccccchhhcC-CC-EEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHH
Confidence 9999998 999999999998884 33 45555 99999999999999876 22233333333 335665555555
Q ss_pred HH
Q 027511 140 EI 141 (222)
Q Consensus 140 ~~ 141 (222)
.+
T Consensus 477 l~ 478 (487)
T TIGR02398 477 LA 478 (487)
T ss_pred HH
Confidence 44
No 90
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.2e-11 Score=101.96 Aligned_cols=113 Identities=13% Similarity=0.162 Sum_probs=101.7
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEE--cCC-CccccHHHHHHHHhCCcEEE
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLN--SSL-TEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~--~s~-~E~~g~~ilEAma~G~PvVa 78 (222)
.|++-++|.|.||.++.+.+.++++.++..-....+++.+|++.++.+||+.|+ +|. .=-.||+++...-||+||+|
T Consensus 291 lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA 370 (444)
T KOG2941|consen 291 LPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 370 (444)
T ss_pred CCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceee
Confidence 588889999999999999999999999753344899999999999999999875 443 34579999999999999999
Q ss_pred eCCCCccccccCCceEEeCCCHHHHHHHHHHHHhcC
Q 027511 79 TRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLL 114 (222)
Q Consensus 79 ~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~ 114 (222)
-+...+.|++.++.+|++..|.+++++.+..+.++-
T Consensus 371 ~~fkcl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~f 406 (444)
T KOG2941|consen 371 VNFKCLDELVKHGENGLVFEDSEELAEQLQMLFKNF 406 (444)
T ss_pred ecchhHHHHHhcCCCceEeccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999963
No 91
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.28 E-value=1e-11 Score=106.35 Aligned_cols=113 Identities=10% Similarity=0.140 Sum_probs=81.4
Q ss_pred ceEEE-EEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 4 KVRFI-VGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 4 ~~~lv-i~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
+++++ ++|++ ..+.+++.++++++.+.+.|. .+ ++..+|+.||++|.++ .+++++|||++|+|+|+++.+
T Consensus 209 ~~~~~~~~g~~-~~~~l~~~~~~~~l~~~v~~~---~~-~~~~~l~~ad~~v~~~----g~~~l~Ea~~~g~Pvv~~~~~ 279 (348)
T TIGR01133 209 GIQIVHQTGKN-DLEKVKNVYQELGIEAIVTFI---DE-NMAAAYAAADLVISRA----GASTVAELAAAGVPAILIPYP 279 (348)
T ss_pred CcEEEEECCcc-hHHHHHHHHhhCCceEEecCc---cc-CHHHHHHhCCEEEECC----ChhHHHHHHHcCCCEEEeeCC
Confidence 35554 44555 447888888888876555555 23 8999999999999764 278999999999999998875
Q ss_pred C-------ccccccCCceEEeCC--C--HHHHHHHHHHHHhcCC--CCCHHHHHHH
Q 027511 83 G-------VPEVLPDDMVVLAEP--D--PGDMVLAIRKAISLLP--KIDPQVMHER 125 (222)
Q Consensus 83 g-------~~e~i~~~~~g~~~~--~--~~~la~~i~~ll~~~~--~~~~~~~~~~ 125 (222)
+ ..+++.++.+|+..+ | +++++++|.+++++++ +.++.++++.
T Consensus 280 ~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01133 280 YAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKL 335 (348)
T ss_pred CCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 4 234677776665433 4 9999999999998865 3444444433
No 92
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.24 E-value=6.2e-11 Score=102.96 Aligned_cols=103 Identities=20% Similarity=0.222 Sum_probs=81.0
Q ss_pred CCceEEEEEcC-CccHHHHHHHHHHc-CCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 2 RVKVRFIVGGD-GPKRVRLEEMREKH-SLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 2 ~p~~~lvi~G~-g~~~~~l~~~~~~~-~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
+|+++++++|+ +..+++++++++++ ++. +.+.. +++..+|+.||++|.+| |.+.+|||++|+|+|+.
T Consensus 218 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--v~~~~----~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~ 286 (380)
T PRK00025 218 YPDLRFVLPLVNPKRREQIEEALAEYAGLE--VTLLD----GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVG 286 (380)
T ss_pred CCCeEEEEecCChhhHHHHHHHHhhcCCCC--eEEEc----ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEE
Confidence 57899999976 66667788888776 553 55533 47999999999999987 78888999999999976
Q ss_pred -----------------CCCCccccccCCce--EEeC--CCHHHHHHHHHHHHhcCC
Q 027511 80 -----------------RVGGVPEVLPDDMV--VLAE--PDPGDMVLAIRKAISLLP 115 (222)
Q Consensus 80 -----------------~~gg~~e~i~~~~~--g~~~--~~~~~la~~i~~ll~~~~ 115 (222)
+.+++++++.++.. ++.. .|++++++.+.+++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~ 343 (380)
T PRK00025 287 YKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGA 343 (380)
T ss_pred EccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHH
Confidence 45667777777643 2433 378999999999999876
No 93
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.22 E-value=1.6e-10 Score=99.56 Aligned_cols=107 Identities=21% Similarity=0.166 Sum_probs=89.3
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCC-CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC-
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSL-QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV- 81 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l-~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~- 81 (222)
++.+++.|+++.+..+++.++++++ .++|.|+|....+++..+|+.||++|.+|. | ...|||++|+|+|+++.
T Consensus 231 ~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~~~~~ 305 (363)
T cd03786 231 DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVPVLNLRDR 305 (363)
T ss_pred CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCCEEeeCCC
Confidence 4677777888878899998888876 678999998888999999999999999985 4 47899999999999874
Q ss_pred CCccccccCCceEEeCCCHHHHHHHHHHHHhcCC
Q 027511 82 GGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP 115 (222)
Q Consensus 82 gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~ 115 (222)
+..++.+..+.+.....|+++++++|.++++++.
T Consensus 306 ~~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~~~~ 339 (363)
T cd03786 306 TERPETVESGTNVLVGTDPEAILAAIEKLLSDEF 339 (363)
T ss_pred CccchhhheeeEEecCCCHHHHHHHHHHHhcCch
Confidence 5566777777665555579999999999998865
No 94
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.20 E-value=2e-10 Score=101.70 Aligned_cols=109 Identities=10% Similarity=0.174 Sum_probs=89.5
Q ss_pred CCCceEEEEEcCCcc-HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 1 MRVKVRFIVGGDGPK-RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 1 ~~p~~~lvi~G~g~~-~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
+.|+++|.| |.+.. ...|.++ +++ ++|+..+.+...++.+++..||+++.+|..|++++++.||++.|+|+++.
T Consensus 303 ~lPd~~f~I-ga~te~s~kL~~L-~~y---~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~af 377 (438)
T TIGR02919 303 ALPDYHFHI-AALTEMSSKLMSL-DKY---DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGF 377 (438)
T ss_pred hCCCcEEEE-EecCcccHHHHHH-Hhc---CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEE
Confidence 369999999 65544 6788888 766 34555555545689999999999999999999999999999999999998
Q ss_pred CCC-CccccccCCceEEeCCCHHHHHHHHHHHHhcCC
Q 027511 80 RVG-GVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP 115 (222)
Q Consensus 80 ~~g-g~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~ 115 (222)
+.. |..+++.+ +..+...++++++++|.+++.++.
T Consensus 378 d~t~~~~~~i~~-g~l~~~~~~~~m~~~i~~lL~d~~ 413 (438)
T TIGR02919 378 EETAHNRDFIAS-ENIFEHNEVDQLISKLKDLLNDPN 413 (438)
T ss_pred ecccCCcccccC-CceecCCCHHHHHHHHHHHhcCHH
Confidence 874 56677777 344666799999999999998875
No 95
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.13 E-value=9.4e-10 Score=104.46 Aligned_cols=144 Identities=11% Similarity=0.150 Sum_probs=103.3
Q ss_pred CCceE--EEEE-------cCCccHHHHHHHHHH--------cCCCC--cEEE-eCCCChhHHHHHHHhccEEEEcCCCcc
Q 027511 2 RVKVR--FIVG-------GDGPKRVRLEEMREK--------HSLQD--RVEM-LGAVPHAQVRSVLISGHIFLNSSLTEA 61 (222)
Q Consensus 2 ~p~~~--lvi~-------G~g~~~~~l~~~~~~--------~~l~~--~V~~-~g~v~~~~~~~ll~~adv~v~~s~~E~ 61 (222)
+|+++ ++++ |+++.++.++..+.+ ++..+ -|.+ ...++.+++..+|+.||++|.||..|+
T Consensus 392 ~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDG 471 (934)
T PLN03064 392 NPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDG 471 (934)
T ss_pred CccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccc
Confidence 56654 5555 566666665544432 22211 1443 556899999999999999999999999
Q ss_pred ccHHHHHHHHhCC----cEEEeCCCCccccccCCceEEeCC-CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCHH
Q 027511 62 FCIAILEAASCGL----LTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLLP---KIDPQVMHERMKKLYNWH 133 (222)
Q Consensus 62 ~g~~ilEAma~G~----PvVa~~~gg~~e~i~~~~~g~~~~-~~~~la~~i~~ll~~~~---~~~~~~~~~~~~~~fs~~ 133 (222)
+++++.|+|+|+. ++|.+..+|..+.+..+.. ++.| |+++++++|.+++..+. .......++.+ ..+++.
T Consensus 472 mNLva~Eyva~~~~~~GvLILSEfaGaa~~L~~~Al-lVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V-~~~d~~ 549 (934)
T PLN03064 472 MNLVSYEFVACQDSKKGVLILSEFAGAAQSLGAGAI-LVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHV-TTHTAQ 549 (934)
T ss_pred cCchHHHHHHhhcCCCCCeEEeCCCchHHHhCCceE-EECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc-ccCCHH
Confidence 9999999999944 4444888888888844443 4555 99999999999999655 33444555555 558999
Q ss_pred HHHHHHHHHHHHHh
Q 027511 134 DVAKRTEIVYDRAL 147 (222)
Q Consensus 134 ~~~~~~~~~~~~~~ 147 (222)
..++.+.+-+..+.
T Consensus 550 ~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 550 EWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998777666654
No 96
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.99 E-value=7.4e-09 Score=95.00 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=107.7
Q ss_pred CceEEEEEcCCcc--------HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEE-cCC-CccccHHHHHHHHh
Q 027511 3 VKVRFIVGGDGPK--------RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLN-SSL-TEAFCIAILEAASC 72 (222)
Q Consensus 3 p~~~lvi~G~g~~--------~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~-~s~-~E~~g~~ilEAma~ 72 (222)
.+++|+++|.|.. ...+.+++++...+++|.|+...+.+--..++..+|++++ ||. +|++|++=+=||..
T Consensus 423 ~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~n 502 (601)
T TIGR02094 423 RPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMN 502 (601)
T ss_pred CCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHc
Confidence 3689999998863 3455555655446779999888877777888999999999 999 99999999999999
Q ss_pred CCcEEEeCCCCccccccCCceEEeC--------------CCHHHHHHHHHHHH-hcC----CC----CCHHHHHHHHHh-
Q 027511 73 GLLTVSTRVGGVPEVLPDDMVVLAE--------------PDPGDMVLAIRKAI-SLL----PK----IDPQVMHERMKK- 128 (222)
Q Consensus 73 G~PvVa~~~gg~~e~i~~~~~g~~~--------------~~~~~la~~i~~ll-~~~----~~----~~~~~~~~~~~~- 128 (222)
|.+.+++.-|...|.. ++.+||.. .|.+++.++|++.+ ... .. ......++.+..
T Consensus 503 GgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~ 581 (601)
T TIGR02094 503 GVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATI 581 (601)
T ss_pred CCceeecccCcccccC-CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhcc
Confidence 9999999999888887 45566532 47789999998877 321 11 123333444444
Q ss_pred --cCCHHHHHHHHHHHH
Q 027511 129 --LYNWHDVAKRTEIVY 143 (222)
Q Consensus 129 --~fs~~~~~~~~~~~~ 143 (222)
.|||++++++|.+.|
T Consensus 582 ~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 582 APRFSTNRMVREYVDKF 598 (601)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 799999999999987
No 97
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=98.81 E-value=9.9e-09 Score=92.38 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCCC----Cc--EEEeCCC-C------hhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 16 RVRLEEMREKHSLQ----DR--VEMLGAV-P------HAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 16 ~~~l~~~~~~~~l~----~~--V~~~g~v-~------~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
.+.+...+++.++. ++ |+|++.. + .=++.++++.+|+.|+||.+|.+|.+++|+.++|+|.|+|+..
T Consensus 423 ~DpILn~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLs 502 (633)
T PF05693_consen 423 NDPILNMIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLS 502 (633)
T ss_dssp T-HHHHHHHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTB
T ss_pred cCHHHHHHHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccch
Confidence 34555666666653 33 5555422 2 3568999999999999999999999999999999999999998
Q ss_pred CccccccCC-------ceEEeCC---CHHHHHHHHH----HHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 027511 83 GVPEVLPDD-------MVVLAEP---DPGDMVLAIR----KAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRA 146 (222)
Q Consensus 83 g~~e~i~~~-------~~g~~~~---~~~~la~~i~----~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 146 (222)
|+.-.+.+. +..++.. +.++.++.|. +.....+ +...++..+++.+..+|+.+...|.+.|+.+
T Consensus 503 GFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~A 582 (633)
T PF05693_consen 503 GFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLA 582 (633)
T ss_dssp HHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 877665543 2223333 4455444444 4444433 3445566677888999999999999999998
Q ss_pred hcCCCc
Q 027511 147 LECPNQ 152 (222)
Q Consensus 147 ~~~~~~ 152 (222)
+....+
T Consensus 583 L~~a~p 588 (633)
T PF05693_consen 583 LRRAYP 588 (633)
T ss_dssp HHHHSH
T ss_pred HHhcCc
Confidence 875443
No 98
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.75 E-value=1.3e-07 Score=82.75 Aligned_cols=104 Identities=16% Similarity=0.228 Sum_probs=71.6
Q ss_pred CCceEEEEE-cCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 2 RVKVRFIVG-GDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 2 ~p~~~lvi~-G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+|++++++. +++.....++++.++++...+|.+.+. +...+|+.||++|.+| |.+.+|+|++|+|+|...
T Consensus 223 ~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~y 293 (385)
T TIGR00215 223 EPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG----DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGY 293 (385)
T ss_pred CCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc----hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEE
Confidence 578888665 455566777777777766667776653 4567999999999999 777789999999999763
Q ss_pred -CCCcc----------------ccccCCceE--EeCC--CHHHHHHHHHHHHhcC
Q 027511 81 -VGGVP----------------EVLPDDMVV--LAEP--DPGDMVLAIRKAISLL 114 (222)
Q Consensus 81 -~gg~~----------------e~i~~~~~g--~~~~--~~~~la~~i~~ll~~~ 114 (222)
.+.+. .++.+.... +... +++.+++.+.++++++
T Consensus 294 k~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 294 RMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred cCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 22221 222222211 2212 6788999999998876
No 99
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.57 E-value=7.7e-07 Score=83.67 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=105.6
Q ss_pred ceEEEEEcCCccH--------HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC--CccccHHHHHHHHhC
Q 027511 4 KVRFIVGGDGPKR--------VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL--TEAFCIAILEAASCG 73 (222)
Q Consensus 4 ~~~lvi~G~g~~~--------~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~ilEAma~G 73 (222)
.++|+++|.+... +.+.+++++....++|.|+...+-+--..++..+|++++||+ .|++|++=+=||.-|
T Consensus 513 pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG 592 (778)
T cd04299 513 PVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNG 592 (778)
T ss_pred CeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcC
Confidence 5899999976422 234444554456679999888877777888999999999999 999999999999999
Q ss_pred CcEEEeCCCCccccccCCceEEeCC--------------CHHHHHHHHHHHHh----cC------C--CCCHHHHHHHHH
Q 027511 74 LLTVSTRVGGVPEVLPDDMVVLAEP--------------DPGDMVLAIRKAIS----LL------P--KIDPQVMHERMK 127 (222)
Q Consensus 74 ~PvVa~~~gg~~e~i~~~~~g~~~~--------------~~~~la~~i~~ll~----~~------~--~~~~~~~~~~~~ 127 (222)
.+-+++--|...|-. ++.+||.-+ +.++|.+.|++.+- +. . ..++.++...+.
T Consensus 593 ~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~ 671 (778)
T cd04299 593 GLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLG 671 (778)
T ss_pred CeeeecccCcccccc-CCCCceEeCCCccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999987 677776443 34667777765444 21 1 234444444555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 027511 128 KLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 128 ~~fs~~~~~~~~~~~~~ 144 (222)
..|||++|+++|.+-|.
T Consensus 672 p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 672 PRFSAERMVREYVERFY 688 (778)
T ss_pred cCCCHHHHHHHHHHHhH
Confidence 59999999999987654
No 100
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.56 E-value=5e-07 Score=80.19 Aligned_cols=144 Identities=14% Similarity=0.088 Sum_probs=94.9
Q ss_pred CCceEEEEEcCC-ccHHHHHHHHHHcCCC-CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 2 RVKVRFIVGGDG-PKRVRLEEMREKHSLQ-DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 2 ~p~~~lvi~G~g-~~~~~l~~~~~~~~l~-~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
.|+.+|++.... .....+++.++++|+. +|+.|.+..+.++....++.+|+++-|.-+ +-+.+.+||+++|+|||+-
T Consensus 312 vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~-nG~TTt~dALwmGVPvVTl 390 (468)
T PF13844_consen 312 VPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPY-NGGTTTLDALWMGVPVVTL 390 (468)
T ss_dssp STTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB-
T ss_pred CCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCC-CCcHHHHHHHHcCCCEEec
Confidence 588999887533 3456788888889885 789999999999998999999999988543 3478899999999999987
Q ss_pred CCCCccccccC------CceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHH--hcCCHHHHHHHHHHHHHHH
Q 027511 80 RVGGVPEVLPD------DMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMK--KLYNWHDVAKRTEIVYDRA 146 (222)
Q Consensus 80 ~~gg~~e~i~~------~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~--~~fs~~~~~~~~~~~~~~~ 146 (222)
....+..=+.. |..-++..|.++.++.-.++..+++ +...++.+++.. .-|+-..+++.+++.|+.+
T Consensus 391 ~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 391 PGETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp --SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 65443332211 1223677889999999999999877 444444444443 3599999999999999875
No 101
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.33 E-value=1.6e-05 Score=71.34 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=70.6
Q ss_pred EEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCc----EEEeCCCCccccccCCceEEeCCCHHHHHHHH
Q 027511 32 VEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLL----TVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAI 107 (222)
Q Consensus 32 V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~P----vVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i 107 (222)
+.+.+.++.+++..+|+.||+++.||.-+|..++..|+.+|..+ +|.|...|..+.+.++...+-+-|++++|++|
T Consensus 355 ~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~~al~VNP~d~~~~A~ai 434 (474)
T PF00982_consen 355 IYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSEAALLVNPWDIEEVADAI 434 (474)
T ss_dssp EEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TTS-EEE-TT-HHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCCccEEECCCChHHHHHHH
Confidence 34466799999999999999999999999999999999999876 77888888899988887656555999999999
Q ss_pred HHHHhcCC---CCCHHHHHHHHHhcCCHHHHHHHHHHH
Q 027511 108 RKAISLLP---KIDPQVMHERMKKLYNWHDVAKRTEIV 142 (222)
Q Consensus 108 ~~ll~~~~---~~~~~~~~~~~~~~fs~~~~~~~~~~~ 142 (222)
.++++.+. +......++.+ ..++....++.+.+-
T Consensus 435 ~~AL~M~~~Er~~r~~~~~~~v-~~~~~~~W~~~~l~~ 471 (474)
T PF00982_consen 435 HEALTMPPEERKERHARLREYV-REHDVQWWAESFLRD 471 (474)
T ss_dssp HHHHT--HHHHHHHHHHHHHHH-HHT-HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHh-HhCCHHHHHHHHHHH
Confidence 99999865 12222333333 335655555555443
No 102
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.11 E-value=3.5e-05 Score=67.08 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=62.8
Q ss_pred CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCccccccCCceEE-eCCCHHHHHHHH
Q 027511 29 QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVL-AEPDPGDMVLAI 107 (222)
Q Consensus 29 ~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~-~~~~~~~la~~i 107 (222)
.++|.+.+.++..++..+++.|+++|--| .|. +.||+++|+|||+ .|.-+|.+..+.+.+ +..|++++.+++
T Consensus 261 ~~~v~l~~~l~~~~~l~Ll~~a~~vitdS----Sgg-i~EA~~lg~Pvv~--l~~R~e~~~~g~nvl~vg~~~~~I~~a~ 333 (365)
T TIGR03568 261 HPNFRLFKSLGQERYLSLLKNADAVIGNS----SSG-IIEAPSFGVPTIN--IGTRQKGRLRADSVIDVDPDKEEIVKAI 333 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCCEEEEcC----hhH-HHhhhhcCCCEEe--ecCCchhhhhcCeEEEeCCCHHHHHHHH
Confidence 36799999999999999999999999333 233 3899999999994 467888888787766 655999999999
Q ss_pred HHHHh
Q 027511 108 RKAIS 112 (222)
Q Consensus 108 ~~ll~ 112 (222)
.++++
T Consensus 334 ~~~~~ 338 (365)
T TIGR03568 334 EKLLD 338 (365)
T ss_pred HHHhC
Confidence 98543
No 103
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3.6e-05 Score=69.01 Aligned_cols=146 Identities=13% Similarity=0.144 Sum_probs=99.4
Q ss_pred CCceEEEEEcCCccH---HHHHHHHHHcCC-CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEE
Q 027511 2 RVKVRFIVGGDGPKR---VRLEEMREKHSL-QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTV 77 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~---~~l~~~~~~~~l-~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvV 77 (222)
-|+-.|++.|.|++. ..+++++++.|+ .+|++|++..++++...-|.-||+++-|.=+-+ ..+.+||+.+|+|||
T Consensus 457 vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g-~TTa~daLwm~vPVl 535 (620)
T COG3914 457 VPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGG-HTTASDALWMGVPVL 535 (620)
T ss_pred CCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCCC-ccchHHHHHhcCcee
Confidence 478888888876554 678888999988 469999999999999999999999997655433 568899999999999
Q ss_pred EeCCCCccc-----ccc-CCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHh--cCCHHHHHHHHHHHHHHHh
Q 027511 78 STRVGGVPE-----VLP-DDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKK--LYNWHDVAKRTEIVYDRAL 147 (222)
Q Consensus 78 a~~~gg~~e-----~i~-~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~--~fs~~~~~~~~~~~~~~~~ 147 (222)
+--...+.. ++. -|..-++..+.++.++.-..+-++.. .....+-.....+ -|+.+.++++++++|..+.
T Consensus 536 T~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~ 615 (620)
T COG3914 536 TRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMW 615 (620)
T ss_pred eeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHH
Confidence 643322111 111 11222445566666665555555542 1222222222222 6999999999999999876
Q ss_pred c
Q 027511 148 E 148 (222)
Q Consensus 148 ~ 148 (222)
+
T Consensus 616 ~ 616 (620)
T COG3914 616 S 616 (620)
T ss_pred H
Confidence 5
No 104
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.07 E-value=2.6e-05 Score=68.21 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=70.3
Q ss_pred CCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcc----ccccCCceE-EeCC---C
Q 027511 28 LQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVP----EVLPDDMVV-LAEP---D 99 (222)
Q Consensus 28 l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~----e~i~~~~~g-~~~~---~ 99 (222)
++++|.+.+++++. .+|..+|++|..+- ..++.||+++|+|+|.....+-. ..+.+.+.+ .... +
T Consensus 273 ~~~~v~~~~~~p~~---~ll~~~~~~I~hgG----~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~ 345 (392)
T TIGR01426 273 LPPNVEVRQWVPQL---EILKKADAFITHGG----MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVT 345 (392)
T ss_pred CCCCeEEeCCCCHH---HHHhhCCEEEECCC----chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCC
Confidence 45789999999764 67899999995443 35789999999999986554322 223332333 2222 6
Q ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCHHHHHHHHHHH
Q 027511 100 PGDMVLAIRKAISLLP-KIDPQVMHERMKKLYNWHDVAKRTEIV 142 (222)
Q Consensus 100 ~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~fs~~~~~~~~~~~ 142 (222)
+++++++|.+++++++ +......++.+...-..+..++.++++
T Consensus 346 ~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 346 AEKLREAVLAVLSDPRYAERLRKMRAEIREAGGARRAADEIEGF 389 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 7899999999998765 333344444555555555555555443
No 105
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=2e-05 Score=68.53 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=93.7
Q ss_pred CCCceEEEEEcCCccH-HHHHHHHHHcCCC-------------CcEEEeCCCChhHHHHHHHhccE-EEEcCCCccccHH
Q 027511 1 MRVKVRFIVGGDGPKR-VRLEEMREKHSLQ-------------DRVEMLGAVPHAQVRSVLISGHI-FLNSSLTEAFCIA 65 (222)
Q Consensus 1 ~~p~~~lvi~G~g~~~-~~l~~~~~~~~l~-------------~~V~~~g~v~~~~~~~ll~~adv-~v~~s~~E~~g~~ 65 (222)
++||..++++=.-|.+ +.+++++++.|+. .+|.+...+ -++..+|.-+|+ ||--|..+.-|--
T Consensus 257 ~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGSlv~~GGHN 334 (419)
T COG1519 257 QFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM--GELGLLYGIADIAFVGGSLVPIGGHN 334 (419)
T ss_pred hCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH--hHHHHHHhhccEEEECCcccCCCCCC
Confidence 4688999999988777 6888888888762 245555554 789999999999 6777888888899
Q ss_pred HHHHHHhCCcEEEe----CCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHh
Q 027511 66 ILEAASCGLLTVST----RVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHERMKK 128 (222)
Q Consensus 66 ilEAma~G~PvVa~----~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~ 128 (222)
++|++++|+|||.- |...+.+-+...+.++...|.+.++.++..+..++. ..++.++...+.+
T Consensus 335 ~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 335 PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999953 334444445555666777778888888888887744 4455555555544
No 106
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.05 E-value=8.8e-05 Score=66.29 Aligned_cols=114 Identities=10% Similarity=0.100 Sum_probs=88.7
Q ss_pred EEE-eCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCC-----cEEEeCCCCccccccCCceEEeCC-CHHHHH
Q 027511 32 VEM-LGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGL-----LTVSTRVGGVPEVLPDDMVVLAEP-DPGDMV 104 (222)
Q Consensus 32 V~~-~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~-----PvVa~~~gg~~e~i~~~~~g~~~~-~~~~la 104 (222)
|.+ ...++.+++..+|+.||+.+.||.-+|..++..|+.+|-. ++|-|...|..+.+. + ..++.| |.++++
T Consensus 333 v~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~-~-AllVNP~d~~~~A 410 (474)
T PRK10117 333 LYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT-S-ALIVNPYDRDEVA 410 (474)
T ss_pred EEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccchHHHhC-C-CeEECCCCHHHHH
Confidence 444 5678999999999999999999999999999999999965 377888888887774 3 445656 999999
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 105 LAIRKAISLLP---KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 105 ~~i~~ll~~~~---~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
++|.+++..+. +......++.+ ..++....++.+.+-+..+..
T Consensus 411 ~Ai~~AL~Mp~~Er~~R~~~l~~~v-~~~dv~~W~~~fL~~L~~~~~ 456 (474)
T PRK10117 411 AALDRALTMPLAERISRHAEMLDVI-VKNDINHWQECFISDLKQIVP 456 (474)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh-hhCCHHHHHHHHHHHHHHhhh
Confidence 99999999876 22333344444 447888888877777766543
No 107
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=2.4e-05 Score=66.95 Aligned_cols=118 Identities=13% Similarity=0.099 Sum_probs=101.1
Q ss_pred cEEEeCCCCh-hHHHHHHHhccEEEEcCC---Ccc---ccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHHH
Q 027511 31 RVEMLGAVPH-AQVRSVLISGHIFLNSSL---TEA---FCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDM 103 (222)
Q Consensus 31 ~V~~~g~v~~-~~~~~ll~~adv~v~~s~---~E~---~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~l 103 (222)
++...|+++. ..+...++..+++++-++ .++ +.+.+.|+|+||.|.++....++..++.++...+...|..++
T Consensus 238 ~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~d~kdl 317 (373)
T COG4641 238 NVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQDSKDL 317 (373)
T ss_pred hhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEecCHHHH
Confidence 5667777766 778888888899887655 222 489999999999999999999999999999998999999999
Q ss_pred HHHHHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 027511 104 VLAIRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 104 a~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
.+.+..++..+. +++.+.+.+++...|+.+.-...+.+...++..
T Consensus 318 ~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI~~ 364 (373)
T COG4641 318 KEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIASINI 364 (373)
T ss_pred HHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999985 778899999999999999988888888877543
No 108
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=97.82 E-value=0.00022 Score=62.72 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=71.5
Q ss_pred CceEEEEEc-CCccHHHHHHHHHHcCCC--------------CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHH
Q 027511 3 VKVRFIVGG-DGPKRVRLEEMREKHSLQ--------------DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAIL 67 (222)
Q Consensus 3 p~~~lvi~G-~g~~~~~l~~~~~~~~l~--------------~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~il 67 (222)
|+++|++.- ++...+.+++..++.+.. +++.+..+ ..++..+|+.||++|..|- .+-.
T Consensus 237 ~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~ADlvI~rSG-----t~T~ 309 (396)
T TIGR03492 237 QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG--RGAFAEILHWADLGIAMAG-----TATE 309 (396)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEec--hHhHHHHHHhCCEEEECcC-----HHHH
Confidence 567776543 455667777776655543 23555555 3678999999999998753 4559
Q ss_pred HHHHhCCcEEEeCCCCcc---ccccC-----Cc-eEEeCCCHHHHHHHHHHHHhcCC
Q 027511 68 EAASCGLLTVSTRVGGVP---EVLPD-----DM-VVLAEPDPGDMVLAIRKAISLLP 115 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~~---e~i~~-----~~-~g~~~~~~~~la~~i~~ll~~~~ 115 (222)
|++++|+|+|.....+.. .+... +. ..+...+++.+++++.+++++++
T Consensus 310 E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 310 QAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPE 366 (396)
T ss_pred HHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHH
Confidence 999999999987743321 12222 22 23445578999999999998754
No 109
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.67 E-value=0.00015 Score=63.40 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=56.4
Q ss_pred CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccCCceEEe-CC---CH
Q 027511 29 QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPDDMVVLA-EP---DP 100 (222)
Q Consensus 29 ~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~~~~g~~-~~---~~ 100 (222)
+++|.+.+++++. .+|..||++| +.+-..++.||+++|+|+|.....+ ..+.+...+.|.. .. ++
T Consensus 287 ~~~v~~~~~~p~~---~ll~~~d~~I----~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~ 359 (401)
T cd03784 287 PDNVRVVDFVPHD---WLLPRCAAVV----HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTA 359 (401)
T ss_pred CCceEEeCCCCHH---HHhhhhheee----ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCH
Confidence 4689999998754 5688899999 4444689999999999999876654 2223333333332 22 67
Q ss_pred HHHHHHHHHHHhc
Q 027511 101 GDMVLAIRKAISL 113 (222)
Q Consensus 101 ~~la~~i~~ll~~ 113 (222)
+++.+++.+++++
T Consensus 360 ~~l~~al~~~l~~ 372 (401)
T cd03784 360 ERLAAALRRLLDP 372 (401)
T ss_pred HHHHHHHHHHhCH
Confidence 9999999999875
No 110
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.66 E-value=0.00066 Score=65.13 Aligned_cols=112 Identities=9% Similarity=0.073 Sum_probs=83.1
Q ss_pred EEE-eCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCC-------------------cEEEeCCCCccccccCC
Q 027511 32 VEM-LGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGL-------------------LTVSTRVGGVPEVLPDD 91 (222)
Q Consensus 32 V~~-~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~-------------------PvVa~~~gg~~e~i~~~ 91 (222)
|.+ ...++.+++..+|+.||+++.|+.-++..++..|+.+|.. .+|.|...|....+. +
T Consensus 417 v~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~-~ 495 (854)
T PLN02205 417 IVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS-G 495 (854)
T ss_pred EEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC-c
Confidence 555 4778999999999999999999999999999999999854 255666655555553 4
Q ss_pred ceEEeCC-CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 027511 92 MVVLAEP-DPGDMVLAIRKAISLLP---KIDPQVMHERMKKLYNWHDVAKRTEIVYDRA 146 (222)
Q Consensus 92 ~~g~~~~-~~~~la~~i~~ll~~~~---~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 146 (222)
. ..+.| |.++++++|.+++..+. +....+.++.+ ..++....++.+..-++.+
T Consensus 496 A-i~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v-~~~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 496 A-IRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYV-STHDVGYWARSFLQDLERT 552 (854)
T ss_pred C-eEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHH
Confidence 3 35555 99999999999999876 22333444444 4467777777766655554
No 111
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.62 E-value=0.00079 Score=58.25 Aligned_cols=102 Identities=25% Similarity=0.224 Sum_probs=69.8
Q ss_pred CceEEEEEcC--CccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHH-HHHHhCCcEEEe
Q 027511 3 VKVRFIVGGD--GPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAIL-EAASCGLLTVST 79 (222)
Q Consensus 3 p~~~lvi~G~--g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~il-EAma~G~PvVa~ 79 (222)
+++.+++... -.....+.+..+++ +++.+...++..++..+++.|+++|- .. | .+. ||.++|+|||.-
T Consensus 213 ~~~~vi~~~hn~p~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvg----dS-s-GI~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 213 QNVPVIFPLHNNPRGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVG----DS-S-GIQEEAPSLGKPVVNI 283 (346)
T ss_dssp TTEEEEEE--S-HHHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEE----SS-H-HHHHHGGGGT--EEEC
T ss_pred CCCcEEEEecCCchHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEE----cC-c-cHHHHHHHhCCeEEEe
Confidence 4566777764 22334555555544 38999999999999999999999973 22 3 556 999999999987
Q ss_pred -CCCCccccccCCceEEeCCCHHHHHHHHHHHHhc
Q 027511 80 -RVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 80 -~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~ 113 (222)
+.|.-++....+.+.++..|++++.+++.+++.+
T Consensus 284 R~~geRqe~r~~~~nvlv~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 284 RDSGERQEGRERGSNVLVGTDPEAIIQAIEKALSD 318 (346)
T ss_dssp SSS-S-HHHHHTTSEEEETSSHHHHHHHHHHHHH-
T ss_pred cCCCCCHHHHhhcceEEeCCCHHHHHHHHHHHHhC
Confidence 5677778888887777777999999999999976
No 112
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=4.1e-05 Score=66.83 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=84.5
Q ss_pred hHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcccc----ccCC---ceEE-----eCC--CHHHHHHH
Q 027511 41 AQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEV----LPDD---MVVL-----AEP--DPGDMVLA 106 (222)
Q Consensus 41 ~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~----i~~~---~~g~-----~~~--~~~~la~~ 106 (222)
=|+.+..+.|++.|+||.+|.+|.++.|.-.+|+|-|+||.+|+.-+ +.+. +..+ ..+ +.+++++-
T Consensus 492 lDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~ 571 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASF 571 (692)
T ss_pred CCHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHH
Confidence 47889999999999999999999999999999999999999876543 4333 2222 222 45777777
Q ss_pred HHHHHhcCC--CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCccHHHH
Q 027511 107 IRKAISLLP--KIDPQVMHERMKKLYNWHDVAKRTEIVYDRALECPNQNLVER 157 (222)
Q Consensus 107 i~~ll~~~~--~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (222)
|.......+ +...++.-++...-.+|..+..-|.+.-.-++++.-+.....
T Consensus 572 m~~F~~qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL~r~~Pd~f~~ 624 (692)
T KOG3742|consen 572 MYEFCKQSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLALSRAYPDQFDE 624 (692)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHHHhhCcHHHHH
Confidence 777776654 334445556777788898888888777666666544443333
No 113
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.53 E-value=0.0005 Score=57.65 Aligned_cols=63 Identities=13% Similarity=0.213 Sum_probs=50.0
Q ss_pred EEcCC-ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 9 VGGDG-PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 9 i~G~g-~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
++|.+ +..+++++..+.. .++.+++++ +++..+|..||++|.+ .|.++.|++++|+|+|.-..
T Consensus 205 v~G~~~~~~~~l~~~~~~~---~~i~~~~~~--~~m~~lm~~aDl~Is~-----~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 205 VTGSSNPNLDELKKFAKEY---PNIILFIDV--ENMAELMNEADLAIGA-----AGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred EECCCCcCHHHHHHHHHhC---CCEEEEeCH--HHHHHHHHHCCEEEEC-----CchHHHHHHHcCCCEEEEEe
Confidence 55654 5566777776653 478899885 7899999999999973 56899999999999997654
No 114
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=0.00075 Score=58.57 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCc--------ccc
Q 027511 16 RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGV--------PEV 87 (222)
Q Consensus 16 ~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~--------~e~ 87 (222)
.+.+.+...+++. +...+++ +++..+|+.||+.| +-+-++++.|..++|+|.|--..+.- ...
T Consensus 224 ~~~~~~~~~~~~~---~~v~~f~--~dm~~~~~~ADLvI----sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~ 294 (357)
T COG0707 224 LEELKSAYNELGV---VRVLPFI--DDMAALLAAADLVI----SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKF 294 (357)
T ss_pred HHHHHHHHhhcCc---EEEeeHH--hhHHHHHHhccEEE----eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHH
Confidence 4455554444443 7788885 77999999999999 55568999999999999995544322 223
Q ss_pred ccCCceEE--eCC--CHHHHHHHHHHHHhcCC
Q 027511 88 LPDDMVVL--AEP--DPGDMVLAIRKAISLLP 115 (222)
Q Consensus 88 i~~~~~g~--~~~--~~~~la~~i~~ll~~~~ 115 (222)
+.+...+. ..+ +++++.+.|.+++++++
T Consensus 295 l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~ 326 (357)
T COG0707 295 LEKAGAALVIRQSELTPEKLAELILRLLSNPE 326 (357)
T ss_pred HHhCCCEEEeccccCCHHHHHHHHHHHhcCHH
Confidence 33333333 223 47899999999998855
No 115
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.0017 Score=58.06 Aligned_cols=109 Identities=11% Similarity=0.163 Sum_probs=79.1
Q ss_pred EEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCC----cEEEeCCCCccccccCCceEEeCC-CHHHHHHH
Q 027511 32 VEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGL----LTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLA 106 (222)
Q Consensus 32 V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~----PvVa~~~gg~~e~i~~~~~g~~~~-~~~~la~~ 106 (222)
..+.-.++.+++..+++.||+++.+|.-++..++..|+.+|-- |.|-|...|....+.+ ..++.| |.++++++
T Consensus 361 ~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~--AliVNP~d~~~va~a 438 (486)
T COG0380 361 HYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD--ALIVNPWDTKEVADA 438 (486)
T ss_pred EEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc--CEeECCCChHHHHHH
Confidence 3446678999999999999999999999999999999999843 6777777777777766 345555 99999999
Q ss_pred HHHHHhcCC--CC-CHHHHHHHHHhcCCHHHHHHHHHHHH
Q 027511 107 IRKAISLLP--KI-DPQVMHERMKKLYNWHDVAKRTEIVY 143 (222)
Q Consensus 107 i~~ll~~~~--~~-~~~~~~~~~~~~fs~~~~~~~~~~~~ 143 (222)
|.+++..+. +. ......+.+ ..++....+..+.+-+
T Consensus 439 i~~AL~m~~eEr~~r~~~~~~~v-~~~d~~~W~~~fl~~l 477 (486)
T COG0380 439 IKRALTMSLEERKERHEKLLKQV-LTHDVARWANSFLDDL 477 (486)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 999999865 21 222222222 3355555555544433
No 116
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.25 E-value=0.001 Score=58.77 Aligned_cols=108 Identities=17% Similarity=0.101 Sum_probs=69.6
Q ss_pred CCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccCCceEEe----CC
Q 027511 27 SLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPDDMVVLA----EP 98 (222)
Q Consensus 27 ~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~~~~g~~----~~ 98 (222)
++++++...+++|+.+ ++.+||++|+ -+-..++.||+..|+|+|+-..+. ..+-+.+-+.|.. .-
T Consensus 281 ~~p~n~~v~~~~p~~~---~l~~ad~vI~----hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l 353 (406)
T COG1819 281 NVPDNVIVADYVPQLE---LLPRADAVIH----HGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEEL 353 (406)
T ss_pred cCCCceEEecCCCHHH---HhhhcCEEEe----cCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccC
Confidence 3456888888887665 8999999994 334557889999999999765542 2333444444422 23
Q ss_pred CHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhcCCHHHHHHHHHH
Q 027511 99 DPGDMVLAIRKAISLLP-KIDPQVMHERMKKLYNWHDVAKRTEI 141 (222)
Q Consensus 99 ~~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~fs~~~~~~~~~~ 141 (222)
+++.++++|++++.+.. +....+..+..++.-....+++.+++
T Consensus 354 ~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~~g~~~~a~~le~ 397 (406)
T COG1819 354 TEERLRAAVNEVLADDSYRRAAERLAEEFKEEDGPAKAADLLEE 397 (406)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 78999999999999865 33333344444444443334443333
No 117
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.99 E-value=0.0058 Score=52.08 Aligned_cols=80 Identities=18% Similarity=0.105 Sum_probs=53.3
Q ss_pred CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcccc------ccCCceEE-eCC-CH
Q 027511 29 QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEV------LPDDMVVL-AEP-DP 100 (222)
Q Consensus 29 ~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~------i~~~~~g~-~~~-~~ 100 (222)
.+++.+.++.+ +++.++|..||++|.-+- ..++.||+++|+|+|.....+..|. +.+.+.+. ... +.
T Consensus 228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~~~G----~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~ 302 (321)
T TIGR00661 228 NENVEIRRITT-DNFKELIKNAELVITHGG----FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL 302 (321)
T ss_pred CCCEEEEECCh-HHHHHHHHhCCEEEECCC----hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH
Confidence 45777777765 689999999999997553 3468999999999998877654442 33333333 322 33
Q ss_pred HHHHHHHHHHHhcC
Q 027511 101 GDMVLAIRKAISLL 114 (222)
Q Consensus 101 ~~la~~i~~ll~~~ 114 (222)
++.+++...+.++
T Consensus 303 -~~~~~~~~~~~~~ 315 (321)
T TIGR00661 303 -RLLEAILDIRNMK 315 (321)
T ss_pred -HHHHHHHhccccc
Confidence 5555555544443
No 118
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=96.95 E-value=0.0045 Score=52.30 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=50.5
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcccc------ccCCceEEeCC----C
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEV------LPDDMVVLAEP----D 99 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~------i~~~~~g~~~~----~ 99 (222)
++|.+.++. ..++.++|..||++|..+- -.++.||+++|+|+|.-...+..|- +...+.+...+ +
T Consensus 232 ~ni~~~~~~-~~~~~~~m~~ad~vIs~~G----~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~ 306 (318)
T PF13528_consen 232 GNIHVRPFS-TPDFAELMAAADLVISKGG----YTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLT 306 (318)
T ss_pred CCEEEeecC-hHHHHHHHHhCCEEEECCC----HHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCC
Confidence 355555442 3789999999999995432 3468999999999998777655443 22333343322 6
Q ss_pred HHHHHHHHHH
Q 027511 100 PGDMVLAIRK 109 (222)
Q Consensus 100 ~~~la~~i~~ 109 (222)
++.+.+.|++
T Consensus 307 ~~~l~~~l~~ 316 (318)
T PF13528_consen 307 PERLAEFLER 316 (318)
T ss_pred HHHHHHHHhc
Confidence 7888887765
No 119
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=96.95 E-value=7.5e-05 Score=57.49 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=52.2
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcc--c------cc-cCCceE-EeCC-
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVP--E------VL-PDDMVV-LAEP- 98 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~--e------~i-~~~~~g-~~~~- 98 (222)
.+|.+.+++ +++..+|+.||+.| +-+-+.++.|++++|+|.|.-...+.. + .+ ..+... +...
T Consensus 55 ~~v~~~~~~--~~m~~~m~~aDlvI----s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFV--DNMAELMAAADLVI----SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSS--SSHHHHHHHHSEEE----ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEech--hhHHHHHHHcCEEE----eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 578899996 56999999999998 445568999999999999865444311 1 12 222211 2222
Q ss_pred -CHHHHHHHHHHHHhcCC
Q 027511 99 -DPGDMVLAIRKAISLLP 115 (222)
Q Consensus 99 -~~~~la~~i~~ll~~~~ 115 (222)
+++.|.++|..++.++.
T Consensus 129 ~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPE 146 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH
T ss_pred CCHHHHHHHHHHHHcCcH
Confidence 46889999998887744
No 120
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.79 E-value=0.0026 Score=57.85 Aligned_cols=82 Identities=20% Similarity=0.107 Sum_probs=57.2
Q ss_pred CCCCcEEEeCCCChhHHHHHH--HhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccCCceEE-eCC-
Q 027511 27 SLQDRVEMLGAVPHAQVRSVL--ISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPDDMVVL-AEP- 98 (222)
Q Consensus 27 ~l~~~V~~~g~v~~~~~~~ll--~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~~~~g~-~~~- 98 (222)
++++||.+.+++|+. ++| .++++|| +-+-..++.||+.+|+|+|+-...+ ....+...+.|. ...
T Consensus 343 ~~p~Nv~i~~w~Pq~---~lL~hp~v~~fI----tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~ 415 (507)
T PHA03392 343 NLPANVLTQKWFPQR---AVLKHKNVKAFV----TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTV 415 (507)
T ss_pred cCCCceEEecCCCHH---HHhcCCCCCEEE----ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccC
Confidence 345788888998875 456 4578888 5555678999999999999765532 222233333333 222
Q ss_pred --CHHHHHHHHHHHHhcCC
Q 027511 99 --DPGDMVLAIRKAISLLP 115 (222)
Q Consensus 99 --~~~~la~~i~~ll~~~~ 115 (222)
+.+++.++|.++++++.
T Consensus 416 ~~t~~~l~~ai~~vl~~~~ 434 (507)
T PHA03392 416 TVSAAQLVLAIVDVIENPK 434 (507)
T ss_pred CcCHHHHHHHHHHHhCCHH
Confidence 77999999999998865
No 121
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=96.79 E-value=0.04 Score=46.63 Aligned_cols=136 Identities=11% Similarity=-0.029 Sum_probs=89.4
Q ss_pred CceEEEEE-cC--C--ccHHHHHHHHHHcCCCCcEEE-eCCCChhHHHHHHHhccEEEEcCC-CccccHHHHHHHHhCCc
Q 027511 3 VKVRFIVG-GD--G--PKRVRLEEMREKHSLQDRVEM-LGAVPHAQVRSVLISGHIFLNSSL-TEAFCIAILEAASCGLL 75 (222)
Q Consensus 3 p~~~lvi~-G~--g--~~~~~l~~~~~~~~l~~~V~~-~g~v~~~~~~~ll~~adv~v~~s~-~E~~g~~ilEAma~G~P 75 (222)
.++++++- |- | ...+++++..+++--.+++.. ...++-+|+.++++++|+.++-.. -.+.|+. .-.+..|+|
T Consensus 174 ~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl-~lLi~~G~~ 252 (322)
T PRK02797 174 DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTL-CLLIQLGKP 252 (322)
T ss_pred CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHH-HHHHHCCCc
Confidence 45666655 22 2 233566666666655466766 567799999999999999887654 6888854 457899999
Q ss_pred EEEe-CCCCccccccCCceEE-eCC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Q 027511 76 TVST-RVGGVPEVLPDDMVVL-AEP--DPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVYDRALEC 149 (222)
Q Consensus 76 vVa~-~~gg~~e~i~~~~~g~-~~~--~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 149 (222)
|+-+ ++.-..++...+...+ ... |...+.++=+++....+ +.+. |+-+.+.+.+.++++.+..+
T Consensus 253 v~l~r~n~fwqdl~e~gv~Vlf~~d~L~~~~v~e~~rql~~~dk--------~~I~--Ff~pn~~~~W~~~l~~~~g~ 320 (322)
T PRK02797 253 VVLSRDNPFWQDLTEQGLPVLFTGDDLDEDIVREAQRQLASVDK--------NIIA--FFSPNYLQGWRNALAIAAGE 320 (322)
T ss_pred EEEecCCchHHHHHhCCCeEEecCCcccHHHHHHHHHHHHhhCc--------ceee--ecCHhHHHHHHHHHHHhhCC
Confidence 9966 5566667766675553 333 44455444333333211 1222 99999999999999877654
No 122
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.0096 Score=55.82 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCceEEEEEcCC-ccH---H----HHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC--CccccHHHHHHHH
Q 027511 2 RVKVRFIVGGDG-PKR---V----RLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL--TEAFCIAILEAAS 71 (222)
Q Consensus 2 ~p~~~lvi~G~g-~~~---~----~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~ilEAma 71 (222)
.|.++++++|.. |.. + .+...++..+...+|.|+...+-+-...++.++||-.+.|+ .|+.|+.=+=+|.
T Consensus 521 ~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~al 600 (750)
T COG0058 521 VPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAAL 600 (750)
T ss_pred CCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHh
Confidence 477888899943 221 2 22333444444567999999887778889999999998887 7999999999999
Q ss_pred hCCcEEEeCCCCcccccc--CCceEEeCCC
Q 027511 72 CGLLTVSTRVGGVPEVLP--DDMVVLAEPD 99 (222)
Q Consensus 72 ~G~PvVa~~~gg~~e~i~--~~~~g~~~~~ 99 (222)
-|.+.|+|--|...|+.. .+.++|..++
T Consensus 601 NGaltigtlDGanvEi~e~vg~~N~~~fG~ 630 (750)
T COG0058 601 NGALTLGTLDGANVEIYEHVGGENGWIFGE 630 (750)
T ss_pred cCCceeeccccHHHHHHHhcCCCceEEeCC
Confidence 999999999999999996 6777777663
No 123
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=96.70 E-value=0.012 Score=50.91 Aligned_cols=70 Identities=7% Similarity=-0.007 Sum_probs=49.0
Q ss_pred hHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC-Cc---cc-----cccCCceE-EeC-C--CHHHHHHHH
Q 027511 41 AQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG-GV---PE-----VLPDDMVV-LAE-P--DPGDMVLAI 107 (222)
Q Consensus 41 ~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g-g~---~e-----~i~~~~~g-~~~-~--~~~~la~~i 107 (222)
+++..+|..||++| +-+-++++.|++++|+|.|..... .. .+ .+.+.+.+ ... . +++.+.+.+
T Consensus 244 ~~m~~~~~~adlvI----sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l 319 (352)
T PRK12446 244 GELPDILAITDFVI----SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHV 319 (352)
T ss_pred hhHHHHHHhCCEEE----ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHH
Confidence 57899999999998 445588999999999999977432 11 11 22233323 222 2 678999999
Q ss_pred HHHHhcC
Q 027511 108 RKAISLL 114 (222)
Q Consensus 108 ~~ll~~~ 114 (222)
.++++++
T Consensus 320 ~~ll~~~ 326 (352)
T PRK12446 320 EELSHNN 326 (352)
T ss_pred HHHHcCH
Confidence 9998764
No 124
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.32 E-value=0.015 Score=40.73 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=55.9
Q ss_pred EEEEcC-CccHHHHHHHHHHcCCCCcEEEe---CCCChhH--HHHHHHhccEEEEcCC---CccccHHHHHHHHhCCcEE
Q 027511 7 FIVGGD-GPKRVRLEEMREKHSLQDRVEML---GAVPHAQ--VRSVLISGHIFLNSSL---TEAFCIAILEAASCGLLTV 77 (222)
Q Consensus 7 lvi~G~-g~~~~~l~~~~~~~~l~~~V~~~---g~v~~~~--~~~ll~~adv~v~~s~---~E~~g~~ilEAma~G~PvV 77 (222)
++|+|+ ......+++.++++|.. ..++ +...... ++..+.++|+.|.+.. ....-.+--+|-..|+|++
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~--~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGK--LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCE--EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEE
Confidence 455554 57888999999999874 4555 5554555 8999999999876655 2334445566778899999
Q ss_pred EeCCCCcccc
Q 027511 78 STRVGGVPEV 87 (222)
Q Consensus 78 a~~~gg~~e~ 87 (222)
.++..|...+
T Consensus 80 ~~~~~~~~~l 89 (97)
T PF10087_consen 80 YSRSRGVSSL 89 (97)
T ss_pred EECCCCHHHH
Confidence 9987665443
No 125
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.30 E-value=0.06 Score=46.82 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=93.1
Q ss_pred CceEEEEEcCCccHHHHHHHH-HHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC-
Q 027511 3 VKVRFIVGGDGPKRVRLEEMR-EKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR- 80 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~-~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~- 80 (222)
|++.++.-=. .+..+++.. +.++..++|.++..+...+...++..|.+.+- .. |.-.=||-..|+||+.-+
T Consensus 236 ~~~~viyp~H--~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~ilt----DS-GgiqEEAp~lg~Pvl~lR~ 308 (383)
T COG0381 236 PDVIVIYPVH--PRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILT----DS-GGIQEEAPSLGKPVLVLRD 308 (383)
T ss_pred CCceEEEeCC--CChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEe----cC-CchhhhHHhcCCcEEeecc
Confidence 4444444332 124444444 56666678999999999999999999977662 22 445679999999999655
Q ss_pred CCCccccccCCceEEeCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 027511 81 VGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVYDRAL 147 (222)
Q Consensus 81 ~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 147 (222)
...-+|.+..+.+.++..+.+.+.+++..++++++ ..+....+...|.-....+++.+++..-.
T Consensus 309 ~TERPE~v~agt~~lvg~~~~~i~~~~~~ll~~~~---~~~~m~~~~npYgdg~as~rIv~~l~~~~ 372 (383)
T COG0381 309 TTERPEGVEAGTNILVGTDEENILDAATELLEDEE---FYERMSNAKNPYGDGNASERIVEILLNYF 372 (383)
T ss_pred CCCCccceecCceEEeCccHHHHHHHHHHHhhChH---HHHHHhcccCCCcCcchHHHHHHHHHHHh
Confidence 45788888888888888899999999999999854 11111233445665556666666665443
No 126
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.17 E-value=0.043 Score=47.94 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=66.6
Q ss_pred CCCceEEEEEcCCccHHH-HHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 1 MRVKVRFIVGGDGPKRVR-LEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 1 ~~p~~~lvi~G~g~~~~~-l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
++|+++|++........+ +++..........+... ..+..++|+.||+.+.+| |++-+|++..|+|.|..
T Consensus 215 ~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~ 285 (373)
T PF02684_consen 215 QRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVII----EGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVA 285 (373)
T ss_pred hCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEc----CCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEE
Confidence 468999998875444433 55555555443333322 256778999999987665 78999999999999965
Q ss_pred CCCC-----------------ccccccCCceE--Ee--CCCHHHHHHHHHHHHhcCC
Q 027511 80 RVGG-----------------VPEVLPDDMVV--LA--EPDPGDMVLAIRKAISLLP 115 (222)
Q Consensus 80 ~~gg-----------------~~e~i~~~~~g--~~--~~~~~~la~~i~~ll~~~~ 115 (222)
.-.. ++.++-+.... +. .-+++.+++++..++++.+
T Consensus 286 Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~ 342 (373)
T PF02684_consen 286 YKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPE 342 (373)
T ss_pred EcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHH
Confidence 4322 22222222111 11 1268888888888888753
No 127
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=96.02 E-value=0.059 Score=49.00 Aligned_cols=108 Identities=14% Similarity=0.202 Sum_probs=78.1
Q ss_pred CCcEEEeCCCChhHHHHHHHhccEEEEcCC-CccccHHHHHHHHhCCcEEEeCCCCcc---------------cc-----
Q 027511 29 QDRVEMLGAVPHAQVRSVLISGHIFLNSSL-TEAFCIAILEAASCGLLTVSTRVGGVP---------------EV----- 87 (222)
Q Consensus 29 ~~~V~~~g~v~~~~~~~ll~~adv~v~~s~-~E~~g~~ilEAma~G~PvVa~~~gg~~---------------e~----- 87 (222)
+.-|.-+|.++.+++..+|+.+.+||-... +| |-+++||+|.|+|.|-+...... ++
T Consensus 321 P~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhP 398 (559)
T PF15024_consen 321 PSFVKNHGILSGDEFQQLLRKAKVFIGLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHP 398 (559)
T ss_pred chhhhhcCcCCHHHHHHHHHhhhEeeecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCCh
Confidence 445777999999999999999999996655 45 45899999999999976653222 11
Q ss_pred -----ccCCceE-EeCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 027511 88 -----LPDDMVV-LAEPDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVYDR 145 (222)
Q Consensus 88 -----i~~~~~g-~~~~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 145 (222)
+.+-... +...|.+++.++|.+++..+-. ..+--.|+-+-|.+|+..+++.
T Consensus 399 Y~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~v~-------Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 399 YAEEFIGEPHVYTVDINNSTEVEAAVKAILATPVE-------PYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred HHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcCCC-------CcCCcccCHHHHHHHHHHHHHh
Confidence 1111112 2334889999999999988431 1333678999999999888765
No 128
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=95.86 E-value=0.011 Score=53.43 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=53.7
Q ss_pred CcEEEeCCCChhHHHHHHHhc--cEEEEcCCCccccHHHHHHHHhCCcEEEeCC-CC---ccccccCCceE-EeCC---C
Q 027511 30 DRVEMLGAVPHAQVRSVLISG--HIFLNSSLTEAFCIAILEAASCGLLTVSTRV-GG---VPEVLPDDMVV-LAEP---D 99 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~a--dv~v~~s~~E~~g~~ilEAma~G~PvVa~~~-gg---~~e~i~~~~~g-~~~~---~ 99 (222)
+++....|+|+. ++|+.. ++|| +-+-..++.||+.+|+|+|+-.. |. ....+.+.+.| .... +
T Consensus 323 ~n~~~~~W~PQ~---~lL~hp~v~~fi----tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~ 395 (500)
T PF00201_consen 323 KNVLIVKWLPQN---DLLAHPRVKLFI----THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLT 395 (500)
T ss_dssp TTEEEESS--HH---HHHTSTTEEEEE----ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-S
T ss_pred ceEEEeccccch---hhhhcccceeee----eccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCc
Confidence 567888888875 446544 4455 45556799999999999998654 22 22233333333 3322 6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Q 027511 100 PGDMVLAIRKAISLLPKIDPQVMHERMKKLYN 131 (222)
Q Consensus 100 ~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs 131 (222)
.+++.++|.++++++. -.+..+++++.|.
T Consensus 396 ~~~l~~ai~~vl~~~~---y~~~a~~ls~~~~ 424 (500)
T PF00201_consen 396 EEELRAAIREVLENPS---YKENAKRLSSLFR 424 (500)
T ss_dssp HHHHHHHHHHHHHSHH---HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhhH---HHHHHHHHHHHHh
Confidence 7999999999999853 3344444555554
No 129
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=95.68 E-value=0.26 Score=42.37 Aligned_cols=110 Identities=13% Similarity=0.041 Sum_probs=73.8
Q ss_pred CceEEEEE-cCCc----cHHHHHHHHHHcCCCCcEEE-eCCCChhHHHHHHHhccEEEEcCC-CccccHHHHHHHHhCCc
Q 027511 3 VKVRFIVG-GDGP----KRVRLEEMREKHSLQDRVEM-LGAVPHAQVRSVLISGHIFLNSSL-TEAFCIAILEAASCGLL 75 (222)
Q Consensus 3 p~~~lvi~-G~g~----~~~~l~~~~~~~~l~~~V~~-~g~v~~~~~~~ll~~adv~v~~s~-~E~~g~~ilEAma~G~P 75 (222)
.++++++- |-|. ..+++++.++++--.+++.. ..++|-+|+.+++++||+.++... -.+.| .+.=.+.+|+|
T Consensus 213 ~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiG-nI~lLl~~G~~ 291 (360)
T PF07429_consen 213 DDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIG-NICLLLQLGKK 291 (360)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHh-HHHHHHHcCCe
Confidence 35666554 3332 33556666666644457776 568899999999999999998876 67777 45568999999
Q ss_pred EEEeCCCCccccccCCc-eE-EeCC--CHHHHHHHHHHHHhc
Q 027511 76 TVSTRVGGVPEVLPDDM-VV-LAEP--DPGDMVLAIRKAISL 113 (222)
Q Consensus 76 vVa~~~gg~~e~i~~~~-~g-~~~~--~~~~la~~i~~ll~~ 113 (222)
|+-+....+-..+.+.. .. +..+ |.+.+.++=+++...
T Consensus 292 v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~ 333 (360)
T PF07429_consen 292 VFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLANV 333 (360)
T ss_pred EEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhhC
Confidence 99877665555554443 23 3323 566677766666654
No 130
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.52 E-value=0.083 Score=43.94 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=54.8
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG 83 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg 83 (222)
++++++.|...+.+..+++.+..+....+.+.|..+-.++..+++.||++|.+.. | .+.-|.+.|+|+|+--.+.
T Consensus 153 ~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds----g-~~HlA~a~~~p~i~l~g~~ 227 (279)
T cd03789 153 GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDS----G-PMHLAAALGTPTVALFGPT 227 (279)
T ss_pred CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCC----H-HHHHHHHcCCCEEEEECCC
Confidence 5788999977776777776665533334556788788999999999999997642 3 4455679999999754433
No 131
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=95.36 E-value=0.099 Score=45.43 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=59.3
Q ss_pred CCCceEEEEEcCCccHHHHHHHHH-HcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 1 MRVKVRFIVGGDGPKRVRLEEMRE-KHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 1 ~~p~~~lvi~G~g~~~~~l~~~~~-~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
++|+.+|++--.....+.++.... .......+.+ ...+..+.+..||+.+..| |++.+|+|.+|+|.|.+
T Consensus 219 ~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~ 289 (381)
T COG0763 219 RYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLIL----IDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVA 289 (381)
T ss_pred hCCCceEEEecCcHHHHHHHHHHhhccccCceEEe----cCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEE
Confidence 357777777665444333333322 2221111222 2356777888888876544 78999999999999854
Q ss_pred C-CCC----------------ccccccCCceE--Ee--CCCHHHHHHHHHHHHhcC
Q 027511 80 R-VGG----------------VPEVLPDDMVV--LA--EPDPGDMVLAIRKAISLL 114 (222)
Q Consensus 80 ~-~gg----------------~~e~i~~~~~g--~~--~~~~~~la~~i~~ll~~~ 114 (222)
- ... ++.++-+.... +. .-.++.+++++..++.+.
T Consensus 290 Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~ 345 (381)
T COG0763 290 YKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNG 345 (381)
T ss_pred EeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcCh
Confidence 3 322 22222222110 11 115788888888888775
No 132
>PLN02670 transferase, transferring glycosyl groups
Probab=95.36 E-value=0.057 Score=48.70 Aligned_cols=110 Identities=12% Similarity=0.034 Sum_probs=61.5
Q ss_pred EEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccCCceEEeC--------CC
Q 027511 32 VEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPDDMVVLAE--------PD 99 (222)
Q Consensus 32 V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~~~~g~~~--------~~ 99 (222)
+.+.+|+|+.+ +|+...+..+- +.+-.++++||+++|+|+|+....+ ....+...+.|+.. -+
T Consensus 341 ~vv~~W~PQ~~---IL~H~~v~~Fv--tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQVK---ILSHESVGGFL--THCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCHHH---HhcCcccceee--ecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 44556776654 44444442211 3344578999999999999865432 33333333444321 15
Q ss_pred HHHHHHHHHHHHhcCC----CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 027511 100 PGDMVLAIRKAISLLP----KIDPQVMHERMKKLYNWHDVAKRTEIVYDRA 146 (222)
Q Consensus 100 ~~~la~~i~~ll~~~~----~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 146 (222)
.+++.+++.+++.+++ +....+.++.++..=+...+++.+.+.+.+.
T Consensus 416 ~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 416 SDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 7999999999997653 2222333333334444455555555554443
No 133
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=95.35 E-value=0.053 Score=51.44 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=77.8
Q ss_pred ceEEEEEcCC-cc---HHHHHHHHHHcC--------CCC--cEEEeCCCChhHHHHHHHhccEEEEcCC--CccccHHHH
Q 027511 4 KVRFIVGGDG-PK---RVRLEEMREKHS--------LQD--RVEMLGAVPHAQVRSVLISGHIFLNSSL--TEAFCIAIL 67 (222)
Q Consensus 4 ~~~lvi~G~g-~~---~~~l~~~~~~~~--------l~~--~V~~~g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~il 67 (222)
...++++|.. |. .+.+.+++.... ..+ +|.|+....-+--..++.++|+..+.|. .|+.|+.=+
T Consensus 566 P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnM 645 (794)
T TIGR02093 566 PRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNM 645 (794)
T ss_pred CeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchh
Confidence 4578999942 21 233333333322 334 7999999888888899999999998887 899999999
Q ss_pred HHHHhCCcEEEeCCCCccccccC--CceEEeCC-CHHHHHH
Q 027511 68 EAASCGLLTVSTRVGGVPEVLPD--DMVVLAEP-DPGDMVL 105 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~~e~i~~--~~~g~~~~-~~~~la~ 105 (222)
=+|.-|.+.++|--|...|+..+ +.++|..+ +.+++.+
T Consensus 646 K~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~ 686 (794)
T TIGR02093 646 KFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEA 686 (794)
T ss_pred HHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHHHHHH
Confidence 99999999999999999999976 67778777 5555554
No 134
>PLN03004 UDP-glycosyltransferase
Probab=95.33 E-value=0.036 Score=49.74 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=52.5
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC----CCccccccC-CceEE-eC------
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV----GGVPEVLPD-DMVVL-AE------ 97 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~----gg~~e~i~~-~~~g~-~~------ 97 (222)
.++.+.+|+|+.+ +|+.+++..+- +.+--++++||+++|+|+|+... ......+.+ -+.|+ ..
T Consensus 334 ~g~~v~~W~PQ~~---iL~H~~v~~Fv--TH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVVKSWAPQVP---VLNHKAVGGFV--THCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEEEeeCCHHH---HhCCCccceEe--ccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCc
Confidence 4677888988775 66777773222 34445789999999999997554 334444432 13332 21
Q ss_pred CCHHHHHHHHHHHHhc
Q 027511 98 PDPGDMVLAIRKAISL 113 (222)
Q Consensus 98 ~~~~~la~~i~~ll~~ 113 (222)
-+.+++++++++++.+
T Consensus 409 ~~~e~l~~av~~vm~~ 424 (451)
T PLN03004 409 VSSTEVEKRVQEIIGE 424 (451)
T ss_pred cCHHHHHHHHHHHhcC
Confidence 2679999999999875
No 135
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.30 E-value=0.051 Score=48.75 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=51.0
Q ss_pred CcEEEeCCCChhHHHHHHHhccE--EEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccCC-ceEEeC---CC
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHI--FLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPDD-MVVLAE---PD 99 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv--~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~~-~~g~~~---~~ 99 (222)
+|....+|+|+.+ +|....+ || +.+--++++||+++|+|+|+....+ ....+.+. +.|+.. -+
T Consensus 324 ~~g~v~~w~PQ~~---iL~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~ 396 (451)
T PLN02410 324 GRGYIVKWAPQKE---VLSHPAVGGFW----SHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLD 396 (451)
T ss_pred CCeEEEccCCHHH---HhCCCccCeee----ecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCccc
Confidence 5666778887765 4555444 54 3344568999999999999765432 33333322 333322 27
Q ss_pred HHHHHHHHHHHHhcC
Q 027511 100 PGDMVLAIRKAISLL 114 (222)
Q Consensus 100 ~~~la~~i~~ll~~~ 114 (222)
.+++++++++++.++
T Consensus 397 ~~~v~~av~~lm~~~ 411 (451)
T PLN02410 397 RGAVERAVKRLMVEE 411 (451)
T ss_pred HHHHHHHHHHHHcCC
Confidence 799999999999764
No 136
>PLN02562 UDP-glycosyltransferase
Probab=95.20 E-value=0.032 Score=50.01 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=48.3
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC----CccccccCC-ceEEe--CCCHHH
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG----GVPEVLPDD-MVVLA--EPDPGD 102 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g----g~~e~i~~~-~~g~~--~~~~~~ 102 (222)
+|+.+.+++|+.+ +|....+..+- +.+--++++||+++|+|+|+.... .....+.+. ..++. ..+.++
T Consensus 328 ~~~~v~~w~PQ~~---iL~h~~v~~fv--tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~ 402 (448)
T PLN02562 328 KQGKVVSWAPQLE---VLKHQAVGCYL--THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKE 402 (448)
T ss_pred cCEEEEecCCHHH---HhCCCccceEE--ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHH
Confidence 4555666666554 34444432221 334457889999999999975543 333344332 22332 237799
Q ss_pred HHHHHHHHHhcC
Q 027511 103 MVLAIRKAISLL 114 (222)
Q Consensus 103 la~~i~~ll~~~ 114 (222)
+.+++++++.++
T Consensus 403 l~~~v~~~l~~~ 414 (448)
T PLN02562 403 VEEGLRKVMEDS 414 (448)
T ss_pred HHHHHHHHhCCH
Confidence 999999999763
No 137
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.16 E-value=0.094 Score=49.96 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=65.3
Q ss_pred cEEEeCCCChhHHHHHHHhccEEEEcCC--CccccHHHHHHHHhCCcEEEeCCCCccccccC--CceEEeCC-CHHHHHH
Q 027511 31 RVEMLGAVPHAQVRSVLISGHIFLNSSL--TEAFCIAILEAASCGLLTVSTRVGGVPEVLPD--DMVVLAEP-DPGDMVL 105 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~--~~~g~~~~-~~~~la~ 105 (222)
+|.|+....-+--..++.++|+..+.|. .|+.|+.=+=+|.-|.+.++|--|...|+..+ +.++|..+ +.+++.+
T Consensus 623 kVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~ev~~ 702 (815)
T PRK14986 623 KVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVEA 702 (815)
T ss_pred eEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHHHHH
Confidence 7999999888888889999999999888 89999999999999999999999999999986 67788776 5555544
No 138
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=94.79 E-value=0.14 Score=48.09 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=64.7
Q ss_pred ceEEEEEcCC-ccH---HHHHHHHHHc--------CCCC--cEEEeCCCChhHHHHHHHhccEEEEcCC--CccccHHHH
Q 027511 4 KVRFIVGGDG-PKR---VRLEEMREKH--------SLQD--RVEMLGAVPHAQVRSVLISGHIFLNSSL--TEAFCIAIL 67 (222)
Q Consensus 4 ~~~lvi~G~g-~~~---~~l~~~~~~~--------~l~~--~V~~~g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~il 67 (222)
.++++++|.. |.. +++.+++.+. .+.+ +|.|+....-+-...++.++||..+.|+ .|+.|+.-+
T Consensus 483 Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgM 562 (713)
T PF00343_consen 483 PVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGM 562 (713)
T ss_dssp -EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHH
T ss_pred CeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcc
Confidence 4789999943 211 3333333221 2334 7999999888888889999999999888 899999999
Q ss_pred HHHHhCCcEEEeCCCCccccccC--CceEEeCC-CHHHH
Q 027511 68 EAASCGLLTVSTRVGGVPEVLPD--DMVVLAEP-DPGDM 103 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~~e~i~~--~~~g~~~~-~~~~l 103 (222)
=+|.-|.+.+++--|...|+... ..++|..+ +.+++
T Consensus 563 K~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~ev 601 (713)
T PF00343_consen 563 KAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEEV 601 (713)
T ss_dssp HHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHHH
T ss_pred hhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHHH
Confidence 99999999999999999998753 23445444 44443
No 139
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.57 E-value=0.085 Score=38.60 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=55.2
Q ss_pred eEEEEEcC-CccHHHHHHHHHHcCCCCcEEEeCCCC------------------------hhHHHHHHHhccEEEEcCCC
Q 027511 5 VRFIVGGD-GPKRVRLEEMREKHSLQDRVEMLGAVP------------------------HAQVRSVLISGHIFLNSSLT 59 (222)
Q Consensus 5 ~~lvi~G~-g~~~~~l~~~~~~~~l~~~V~~~g~v~------------------------~~~~~~ll~~adv~v~~s~~ 59 (222)
+++.|.|. |.+-..+.+.+.+. +.+.+.|.+. .+++.+++..+|+.|--|..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~---~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p 77 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES---PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNP 77 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS---TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhc---CCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCCh
Confidence 57899997 98888888888763 2344444432 15689999999999988877
Q ss_pred ccccHHHHHHHHhCCcEEEeCCCCcc
Q 027511 60 EAFCIAILEAASCGLLTVSTRVGGVP 85 (222)
Q Consensus 60 E~~g~~ilEAma~G~PvVa~~~gg~~ 85 (222)
+..--.+-.++.+|+|+|....|...
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGFSD 103 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSSHH
T ss_pred HHhHHHHHHHHhCCCCEEEECCCCCH
Confidence 77766777888999999987777643
No 140
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.33 E-value=0.14 Score=48.86 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=64.8
Q ss_pred cEEEeCCCChhHHHHHHHhccEEEEcCC--CccccHHHHHHHHhCCcEEEeCCCCccccccC--CceEEeCC-CHHHHHH
Q 027511 31 RVEMLGAVPHAQVRSVLISGHIFLNSSL--TEAFCIAILEAASCGLLTVSTRVGGVPEVLPD--DMVVLAEP-DPGDMVL 105 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~--~~~g~~~~-~~~~la~ 105 (222)
+|.|+....-+--..++.+||+..+.|. .|+.|+.=+=+|.-|.+.++|--|...|+..+ +.++|..+ +.+++.+
T Consensus 610 kVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~ 689 (797)
T cd04300 610 KVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEA 689 (797)
T ss_pred EEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHHHHH
Confidence 7999999888888899999999998887 89999999999999999999999999999886 67777776 5555443
No 141
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=94.19 E-value=0.16 Score=48.34 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=64.5
Q ss_pred cEEEeCCCChhHHHHHHHhccEEEEcCC--CccccHHHHHHHHhCCcEEEeCCCCccccccC--CceEEeCC-CHHHHHH
Q 027511 31 RVEMLGAVPHAQVRSVLISGHIFLNSSL--TEAFCIAILEAASCGLLTVSTRVGGVPEVLPD--DMVVLAEP-DPGDMVL 105 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~--~~~g~~~~-~~~~la~ 105 (222)
+|.|+....-+-...++.++|+..+.|. .|+.|+.=+=+|.-|.+.++|--|...|+..+ +.++|..+ +.+++.+
T Consensus 609 kVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~ev~~ 688 (798)
T PRK14985 609 KVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQVKA 688 (798)
T ss_pred eEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHHHHHH
Confidence 7999999888888899999999999888 89999999999999999999999999999875 66777776 5555444
No 142
>PLN02173 UDP-glucosyl transferase family protein
Probab=94.10 E-value=0.14 Score=45.98 Aligned_cols=80 Identities=19% Similarity=0.111 Sum_probs=50.4
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccCC-ceE--EeC-----
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPDD-MVV--LAE----- 97 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~~-~~g--~~~----- 97 (222)
+++.+.+|+|+.+ +|....+..+- +.+-.++++||+++|+|+|+...-+ ....+.+. ..| +..
T Consensus 317 ~~~~i~~W~PQ~~---iL~H~~v~~Fv--tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSPQLQ---VLSNKAIGCFM--THCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCCHHH---HhCCCccceEE--ecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 4577778887654 55555533222 3344579999999999999865432 33344332 222 211
Q ss_pred -CCHHHHHHHHHHHHhcC
Q 027511 98 -PDPGDMVLAIRKAISLL 114 (222)
Q Consensus 98 -~~~~~la~~i~~ll~~~ 114 (222)
-+.+++.+++++++.++
T Consensus 392 ~~~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGE 409 (449)
T ss_pred cccHHHHHHHHHHHhcCC
Confidence 15799999999999764
No 143
>PLN03007 UDP-glucosyltransferase family protein
Probab=94.03 E-value=0.31 Score=44.11 Aligned_cols=80 Identities=19% Similarity=0.122 Sum_probs=48.7
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccC---CceEE-------
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPD---DMVVL------- 95 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~---~~~g~------- 95 (222)
.++...+|+|+. ++|..+++..+- +.+--++++||+++|+|+|+....+ ....+.+ -+.++
T Consensus 345 ~g~~v~~w~PQ~---~iL~h~~v~~fv--tH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~ 419 (482)
T PLN03007 345 KGLIIRGWAPQV---LILDHQATGGFV--THCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVK 419 (482)
T ss_pred CCEEEecCCCHH---HHhccCccceee--ecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccc
Confidence 356667777764 456665552222 3334578999999999999866432 2222211 11112
Q ss_pred -eCC--CHHHHHHHHHHHHhcC
Q 027511 96 -AEP--DPGDMVLAIRKAISLL 114 (222)
Q Consensus 96 -~~~--~~~~la~~i~~ll~~~ 114 (222)
..+ +.+++.+++++++.++
T Consensus 420 ~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 420 VKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cccCcccHHHHHHHHHHHhcCc
Confidence 112 6799999999999775
No 144
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.72 E-value=1.2 Score=37.73 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=61.0
Q ss_pred ceEEEEEcCCcc-HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 4 KVRFIVGGDGPK-RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 4 ~~~lvi~G~g~~-~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
+.++++.|+++. ++..+++.+..+ +..+.|..+-.++..++++|+++|..-. ..+-=|.|.|+|+|+--.+
T Consensus 211 ~~~~vl~~g~~~e~~~~~~i~~~~~---~~~l~g~~sL~el~ali~~a~l~I~~DS-----gp~HlAaa~g~P~i~lfg~ 282 (319)
T TIGR02193 211 GLQIVLPWGNDAEKQRAERIAEALP---GAVVLPKMSLAEVAALLAGADAVVGVDT-----GLTHLAAALDKPTVTLYGA 282 (319)
T ss_pred CCeEEEeCCCHHHHHHHHHHHhhCC---CCeecCCCCHHHHHHHHHcCCEEEeCCC-----hHHHHHHHcCCCEEEEECC
Confidence 467777754443 344555555433 2356788888999999999999996543 2556678999999974432
Q ss_pred Cccccc-c--CCceEE-----eCCCHHHHHHHHHHHH
Q 027511 83 GVPEVL-P--DDMVVL-----AEPDPGDMVLAIRKAI 111 (222)
Q Consensus 83 g~~e~i-~--~~~~g~-----~~~~~~~la~~i~~ll 111 (222)
..+... + .....+ ..-+++++.+++.+++
T Consensus 283 t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 283 TDPGRTGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred CCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 222211 1 111112 2226788888877653
No 145
>PLN02555 limonoid glucosyltransferase
Probab=93.65 E-value=0.24 Score=44.80 Aligned_cols=80 Identities=19% Similarity=0.071 Sum_probs=48.5
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccCC-ceEEeC-------
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPDD-MVVLAE------- 97 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~~-~~g~~~------- 97 (222)
+++.+.+|+|+.++... .+..+|| +.+-.++++||+++|+|+|+...-+ ....+.+. +.|+..
T Consensus 337 ~~g~v~~W~PQ~~iL~H-~~v~~Fv----tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~ 411 (480)
T PLN02555 337 DKGKIVQWCPQEKVLAH-PSVACFV----THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAEN 411 (480)
T ss_pred CceEEEecCCHHHHhCC-CccCeEE----ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCcccc
Confidence 45666677766542211 3344454 4444578999999999999765432 22233332 333222
Q ss_pred --CCHHHHHHHHHHHHhcC
Q 027511 98 --PDPGDMVLAIRKAISLL 114 (222)
Q Consensus 98 --~~~~~la~~i~~ll~~~ 114 (222)
-+.+++.+++.+++.++
T Consensus 412 ~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 412 KLITREEVAECLLEATVGE 430 (480)
T ss_pred CcCcHHHHHHHHHHHhcCc
Confidence 15689999999999754
No 146
>PLN02448 UDP-glycosyltransferase family protein
Probab=93.45 E-value=0.3 Score=43.93 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=49.1
Q ss_pred CcEEEeCCCChhHHHHHHHhccE--EEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccCC---ceEEe----
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHI--FLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPDD---MVVLA---- 96 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv--~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~~---~~g~~---- 96 (222)
+++.+.+++|+.+ +|...++ || +.+-.++++||+++|+|+|+-...+ ....+.+. +.++.
T Consensus 323 ~~~~v~~w~pQ~~---iL~h~~v~~fv----tHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~ 395 (459)
T PLN02448 323 DMGLVVPWCDQLK---VLCHSSVGGFW----THCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVG 395 (459)
T ss_pred CCEEEeccCCHHH---HhccCccceEE----ecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccc
Confidence 3566667776554 3444444 43 4444578999999999999766543 33334332 22232
Q ss_pred ---CCCHHHHHHHHHHHHhcC
Q 027511 97 ---EPDPGDMVLAIRKAISLL 114 (222)
Q Consensus 97 ---~~~~~~la~~i~~ll~~~ 114 (222)
..+.+++.+++++++.++
T Consensus 396 ~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 396 EETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred cCCcCcHHHHHHHHHHHhcCC
Confidence 126799999999999764
No 147
>PLN02764 glycosyltransferase family protein
Probab=93.41 E-value=0.41 Score=42.99 Aligned_cols=76 Identities=17% Similarity=0.037 Sum_probs=49.0
Q ss_pred EEEeCCCChhHHHHHHHhc--cEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccC-CceEEeC-------
Q 027511 32 VEMLGAVPHAQVRSVLISG--HIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPD-DMVVLAE------- 97 (222)
Q Consensus 32 V~~~g~v~~~~~~~ll~~a--dv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~-~~~g~~~------- 97 (222)
+...+|+|+.+ +|+.. .+|| +.+-.++++||+++|+|+|+....+ ....+.+ -+.|+..
T Consensus 319 ~v~~~W~PQ~~---vL~h~~v~~Fv----tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~ 391 (453)
T PLN02764 319 VVWGGWVQQPL---ILSHPSVGCFV----SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGW 391 (453)
T ss_pred cEEeCCCCHHH---HhcCcccCeEE----ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCc
Confidence 44557777765 34443 3354 4455678999999999999866533 3334432 2333321
Q ss_pred CCHHHHHHHHHHHHhcC
Q 027511 98 PDPGDMVLAIRKAISLL 114 (222)
Q Consensus 98 ~~~~~la~~i~~ll~~~ 114 (222)
-+.+++.+++++++.+.
T Consensus 392 ~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 392 FSKESLRDAINSVMKRD 408 (453)
T ss_pred cCHHHHHHHHHHHhcCC
Confidence 26799999999999764
No 148
>PLN02554 UDP-glycosyltransferase family protein
Probab=93.21 E-value=0.17 Score=45.73 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=43.9
Q ss_pred CcEEEeCCCChhHHHHHHH--hccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----cc-ccccCCceEEe------
Q 027511 30 DRVEMLGAVPHAQVRSVLI--SGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VP-EVLPDDMVVLA------ 96 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~--~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~-e~i~~~~~g~~------ 96 (222)
+|+.+.+|+|+.+ +|+ +..+|| +.+--++++||+.+|+|+|+....+ .. ..+..-+.|+.
T Consensus 342 ~~g~v~~W~PQ~~---iL~H~~v~~Fv----tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~ 414 (481)
T PLN02554 342 DIGKVIGWAPQVA---VLAKPAIGGFV----THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWR 414 (481)
T ss_pred cCceEEeeCCHHH---HhCCcccCccc----ccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccc
Confidence 3444556665543 332 223343 3344568999999999999865432 22 12222222221
Q ss_pred ---------CCCHHHHHHHHHHHHh
Q 027511 97 ---------EPDPGDMVLAIRKAIS 112 (222)
Q Consensus 97 ---------~~~~~~la~~i~~ll~ 112 (222)
.-+.+++.++|++++.
T Consensus 415 ~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 415 GDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred ccccccccCeEcHHHHHHHHHHHhc
Confidence 1167899999999985
No 149
>PLN02208 glycosyltransferase family protein
Probab=93.19 E-value=0.39 Score=43.02 Aligned_cols=79 Identities=14% Similarity=-0.049 Sum_probs=48.9
Q ss_pred cEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccC-CceEEeC-------C
Q 027511 31 RVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPD-DMVVLAE-------P 98 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~-~~~g~~~-------~ 98 (222)
++.+.+|+|+.+ +|+...+..+- +.+--++++||+++|+|+|+...-+ ....+.+ -+.|+.. -
T Consensus 312 g~~v~~W~PQ~~---iL~H~~v~~Fv--tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 386 (442)
T PLN02208 312 GVVWGGWVQQPL---ILDHPSIGCFV--NHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWF 386 (442)
T ss_pred CcEeeccCCHHH---HhcCCccCeEE--ccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcC
Confidence 455667777665 44444442222 3344578999999999999865432 3333333 2333322 2
Q ss_pred CHHHHHHHHHHHHhcC
Q 027511 99 DPGDMVLAIRKAISLL 114 (222)
Q Consensus 99 ~~~~la~~i~~ll~~~ 114 (222)
+.+++.++|.++++++
T Consensus 387 ~~~~l~~ai~~~m~~~ 402 (442)
T PLN02208 387 SKESLSNAIKSVMDKD 402 (442)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 6689999999999764
No 150
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=92.93 E-value=0.62 Score=40.06 Aligned_cols=72 Identities=10% Similarity=0.025 Sum_probs=51.9
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCC--Cc-EEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQ--DR-VEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~--~~-V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
++++++.|+..+++..++..+..+.. .+ +.+.|..+-.++..+++.|+++|..-. ..+-=|.|.|+|+|+--
T Consensus 213 ~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT-----Gp~HlAaA~g~P~valf 287 (348)
T PRK10916 213 GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS-----GLMHVAAALNRPLVALY 287 (348)
T ss_pred CCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHhCCEEEecCC-----hHHHHHHHhCCCEEEEE
Confidence 56788888766666666665554321 12 456788888999999999999995443 25567889999999643
No 151
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=92.88 E-value=0.72 Score=39.55 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=50.0
Q ss_pred ceEEEEEcCCc--cHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 4 KVRFIVGGDGP--KRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 4 ~~~lvi~G~g~--~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+.++++.|+.. .++..++..+..+.+..+.+.|..+-.++..+++.|+++|.... ..+-=|.|.|+|+|+--
T Consensus 213 ~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DS-----Gp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 213 GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDS-----VPMHMAAALGTPLVALF 286 (344)
T ss_pred CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCC-----HHHHHHHHcCCCEEEEE
Confidence 46788888543 22334555444443333557888889999999999999996532 35667889999999743
No 152
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=92.75 E-value=0.75 Score=39.67 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=49.3
Q ss_pred ceEEEEEcCCcc--HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 4 KVRFIVGGDGPK--RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 4 ~~~lvi~G~g~~--~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+.++++.|+... .+..+++.+.......+.+.|..+-.++..+++.|+++|.... ..+-=|.|.|+|+|+--
T Consensus 215 ~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDS-----Gp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 215 GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDS-----APAHIAAAVNTPLICLF 288 (352)
T ss_pred CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCC-----HHHHHHHHcCCCEEEEE
Confidence 567788775322 2333455544333334567898899999999999999995443 35566889999999644
No 153
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.75 E-value=0.74 Score=39.26 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=51.5
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+.++++.|+..+++..+++.+..+ ...+-+.|..+-.++..+++.||++|..-. ..+-=|.|.|+|+|+--
T Consensus 207 ~~~ivl~G~~~e~~~~~~i~~~~~-~~~~~l~g~~sL~el~ali~~a~l~I~~DS-----Gp~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 207 GYQVVLFGSAKDHPAGNEIEALLP-GELRNLAGETSLDEAVDLIALAKAVVTNDS-----GLMHVAAALNRPLVALY 277 (334)
T ss_pred CCEEEEEEChhhHHHHHHHHHhCC-cccccCCCCCCHHHHHHHHHhCCEEEeeCC-----HHHHHHHHcCCCEEEEE
Confidence 467888887766666666655432 122346788888999999999999996543 25566889999999643
No 154
>PLN02210 UDP-glucosyl transferase
Probab=92.62 E-value=0.44 Score=42.90 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=48.1
Q ss_pred cEEEeCCCChhHHHHHHHhcc--EEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccC-CceEEeC------
Q 027511 31 RVEMLGAVPHAQVRSVLISGH--IFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPD-DMVVLAE------ 97 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~ad--v~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~-~~~g~~~------ 97 (222)
+..+.+++|+.+ +|+.+. +|| +.+--++++||+++|+|+|+-...+ ....+.+ -+.|+..
T Consensus 325 ~g~v~~w~PQ~~---iL~h~~vg~Fi----tH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~ 397 (456)
T PLN02210 325 QGVVLEWSPQEK---ILSHMAISCFV----THCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVD 397 (456)
T ss_pred CeEEEecCCHHH---HhcCcCcCeEE----eeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccC
Confidence 344567777654 566665 444 3333468899999999999865532 3333333 2333221
Q ss_pred --CCHHHHHHHHHHHHhcC
Q 027511 98 --PDPGDMVLAIRKAISLL 114 (222)
Q Consensus 98 --~~~~~la~~i~~ll~~~ 114 (222)
-+.+++.+++++++.++
T Consensus 398 ~~~~~~~l~~av~~~m~~~ 416 (456)
T PLN02210 398 GELKVEEVERCIEAVTEGP 416 (456)
T ss_pred CcCCHHHHHHHHHHHhcCc
Confidence 26789999999999763
No 155
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=92.60 E-value=0.56 Score=42.45 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=45.6
Q ss_pred cEEEeCCCChhHHHHHHHh--ccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC----CccccccCC-ceEEeC------
Q 027511 31 RVEMLGAVPHAQVRSVLIS--GHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG----GVPEVLPDD-MVVLAE------ 97 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~--adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g----g~~e~i~~~-~~g~~~------ 97 (222)
++.+.+|+|+.+ +|.. ..+|| +.+-.++++||+++|+|+|+.... .....+.+. +.|+..
T Consensus 344 g~~v~~w~PQ~~---vL~h~~v~~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~ 416 (477)
T PLN02863 344 GLVIRGWAPQVA---ILSHRAVGAFL----THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADT 416 (477)
T ss_pred CEEecCCCCHHH---HhcCCCcCeEE----ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCC
Confidence 466667777643 4544 34454 344456899999999999975542 233333222 333221
Q ss_pred -CCHHHHHHHHHHHHh
Q 027511 98 -PDPGDMVLAIRKAIS 112 (222)
Q Consensus 98 -~~~~~la~~i~~ll~ 112 (222)
.+.+++.+++.+++.
T Consensus 417 ~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 417 VPDSDELARVFMESVS 432 (477)
T ss_pred CcCHHHHHHHHHHHhh
Confidence 156888888888773
No 156
>PLN02207 UDP-glycosyltransferase
Probab=92.59 E-value=0.34 Score=43.69 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=45.6
Q ss_pred CcEEEeCCCChhHHHHHHHhccE--EEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccC-CceEEe------
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHI--FLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPD-DMVVLA------ 96 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv--~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~-~~~g~~------ 96 (222)
+++.+.+|+|+.++ |+...+ || +.+--++++||+++|+|+|+....+ ...++.+ -+.|+.
T Consensus 332 ~~g~i~~W~PQ~~I---L~H~~vg~Fv----TH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~ 404 (468)
T PLN02207 332 GRGMICGWSPQVEI---LAHKAVGGFV----SHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYR 404 (468)
T ss_pred CCeEEEEeCCHHHH---hcccccceee----ecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccc
Confidence 44555677766553 333333 43 3333468899999999999765432 3333222 233331
Q ss_pred -----CCCHHHHHHHHHHHHh
Q 027511 97 -----EPDPGDMVLAIRKAIS 112 (222)
Q Consensus 97 -----~~~~~~la~~i~~ll~ 112 (222)
.-+.+++.++|++++.
T Consensus 405 ~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 405 VHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cccCCcccHHHHHHHHHHHHh
Confidence 1156899999999996
No 157
>PLN00414 glycosyltransferase family protein
Probab=92.51 E-value=0.49 Score=42.46 Aligned_cols=76 Identities=11% Similarity=-0.003 Sum_probs=48.5
Q ss_pred EEEeCCCChhHHHHHHHhc--cEEEEcCCCccccHHHHHHHHhCCcEEEeCCC----Ccccccc-CCceEEeC-------
Q 027511 32 VEMLGAVPHAQVRSVLISG--HIFLNSSLTEAFCIAILEAASCGLLTVSTRVG----GVPEVLP-DDMVVLAE------- 97 (222)
Q Consensus 32 V~~~g~v~~~~~~~ll~~a--dv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g----g~~e~i~-~~~~g~~~------- 97 (222)
..+.+|+|+.+ +|+.. +.|| +.+-.++++||+++|+|+|+.... .....+. .-+.|+..
T Consensus 314 ~vv~~w~PQ~~---vL~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 314 IVWEGWVEQPL---ILSHPSVGCFV----NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eEEeccCCHHH---HhcCCccceEE----ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 44557777665 44444 3454 444567899999999999986543 2333442 22333221
Q ss_pred CCHHHHHHHHHHHHhcC
Q 027511 98 PDPGDMVLAIRKAISLL 114 (222)
Q Consensus 98 ~~~~~la~~i~~ll~~~ 114 (222)
-+.+++.+++++++.++
T Consensus 387 ~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 387 FSKESLRDTVKSVMDKD 403 (446)
T ss_pred cCHHHHHHHHHHHhcCC
Confidence 26799999999999764
No 158
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=92.48 E-value=0.37 Score=43.33 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=50.0
Q ss_pred CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC----CccccccC---CceEEe---C-
Q 027511 29 QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG----GVPEVLPD---DMVVLA---E- 97 (222)
Q Consensus 29 ~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g----g~~e~i~~---~~~g~~---~- 97 (222)
.++..+.+|+|+.+ +|....+..+- +.+-.++++||+.+|+|+|+-... .....+.+ .+.++. .
T Consensus 326 ~~~g~v~~W~PQ~~---iL~h~~vg~fv--tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 326 EEVGMIVSWCSQIE---VLRHRAVGCFV--THCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred cCCeEEEeeCCHHH---HhCCcccceEE--eeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCC
Confidence 35666678887654 55566553322 334456889999999999976542 23333333 122232 1
Q ss_pred -CCHHHHHHHHHHHHhc
Q 027511 98 -PDPGDMVLAIRKAISL 113 (222)
Q Consensus 98 -~~~~~la~~i~~ll~~ 113 (222)
-+.+++.+++.+++++
T Consensus 401 ~~~~e~l~~av~~vm~~ 417 (455)
T PLN02152 401 LVERGEIRRCLEAVMEE 417 (455)
T ss_pred cCcHHHHHHHHHHHHhh
Confidence 1679999999999975
No 159
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=92.42 E-value=0.54 Score=40.73 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=48.7
Q ss_pred CCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEE--eCCC-------CccccccCCceEEeCC
Q 027511 28 LQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVS--TRVG-------GVPEVLPDDMVVLAEP 98 (222)
Q Consensus 28 l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa--~~~g-------g~~e~i~~~~~g~~~~ 98 (222)
..++|.+... ..++.+++..||++| ++- +.+++|++.+++|||- .|.. ...+ ..+...|-...
T Consensus 250 ~~~~i~~~~~--~~~~~~ll~~aDiLI----TDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~~ 321 (369)
T PF04464_consen 250 DNSNIIFVSD--NEDIYDLLAAADILI----TDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIVY 321 (369)
T ss_dssp -TTTEEE-TT---S-HHHHHHT-SEEE----ESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EES
T ss_pred cCCcEEECCC--CCCHHHHHHhcCEEE----Eec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCceeC
Confidence 3456777665 458999999999998 443 4488999999999994 3432 1222 12223344456
Q ss_pred CHHHHHHHHHHHHhcCC
Q 027511 99 DPGDMVLAIRKAISLLP 115 (222)
Q Consensus 99 ~~~~la~~i~~ll~~~~ 115 (222)
+.++|.++|..++++..
T Consensus 322 ~~~eL~~~i~~~~~~~~ 338 (369)
T PF04464_consen 322 NFEELIEAIENIIENPD 338 (369)
T ss_dssp SHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHhhhhCCH
Confidence 88999999999887643
No 160
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=91.92 E-value=2.2 Score=36.86 Aligned_cols=64 Identities=22% Similarity=0.246 Sum_probs=43.2
Q ss_pred HHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC---ccccccCCceEEeCCCHHHHHHHHHHHHhc
Q 027511 45 SVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG---VPEVLPDDMVVLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 45 ~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg---~~e~i~~~~~g~~~~~~~~la~~i~~ll~~ 113 (222)
+++.-||++| .+.|+-..||+..|+|.|++..|- ..+++.+.+..+-..|++++.+.+.+....
T Consensus 244 ~Ll~~a~l~I-----g~ggTMa~EAA~LGtPaIs~~~g~~~~vd~~L~~~Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 244 DLLYYADLVI-----GGGGTMAREAALLGTPAISCFPGKLLAVDKYLIEKGLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred HHHHhcCEEE-----eCCcHHHHHHHHhCCCEEEecCCcchhHHHHHHHCCCeEecCCHHHHHHHHHHhhhc
Confidence 4555555555 233567789999999999987653 334444554567778999998866665543
No 161
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=91.85 E-value=0.73 Score=41.77 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=51.5
Q ss_pred cEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----cccccc-CCceEEeC------CC
Q 027511 31 RVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLP-DDMVVLAE------PD 99 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~-~~~~g~~~------~~ 99 (222)
++.+.+|+|+.+ +|....+..+- +.+-.++++||+.+|+|+|+....+ ....+. .-+.|+.. -+
T Consensus 339 g~vv~~W~PQ~~---iL~h~~vg~Fi--tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 339 GFVVPSWAPQAE---ILAHQAVGGFL--THCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413 (481)
T ss_pred CEEEeecCCHHH---HhCCcccCeeE--ecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCccc
Confidence 578889998775 45555552221 4444578999999999999866532 333442 32333221 16
Q ss_pred HHHHHHHHHHHHhcC
Q 027511 100 PGDMVLAIRKAISLL 114 (222)
Q Consensus 100 ~~~la~~i~~ll~~~ 114 (222)
.+++.++|.+++.++
T Consensus 414 ~~~l~~av~~vm~~~ 428 (481)
T PLN02992 414 RSKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHHHHhcCC
Confidence 689999999999764
No 162
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=91.46 E-value=2.6 Score=35.76 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=48.6
Q ss_pred ceEEEEE-cCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 4 KVRFIVG-GDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 4 ~~~lvi~-G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+.++++. |...+++..+++.+.. .++.+.|..+-.++..+++.||++|.... ..+-=|.|+|+|+|+--.
T Consensus 210 ~~~ivl~~G~~~e~~~~~~i~~~~---~~~~l~g~~sL~elaali~~a~l~I~nDS-----Gp~HlA~A~g~p~valfG 280 (322)
T PRK10964 210 GLRIKLPWGAEHEEQRAKRLAEGF---PYVEVLPKLSLEQVARVLAGAKAVVSVDT-----GLSHLTAALDRPNITLYG 280 (322)
T ss_pred CCeEEEeCCCHHHHHHHHHHHccC---CcceecCCCCHHHHHHHHHhCCEEEecCC-----cHHHHHHHhCCCEEEEEC
Confidence 4567775 5434444555554422 34667788899999999999999996543 255678899999996443
No 163
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=91.16 E-value=2.7 Score=36.42 Aligned_cols=103 Identities=15% Similarity=0.175 Sum_probs=60.1
Q ss_pred EEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCccc
Q 027511 7 FIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 7 lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e 86 (222)
+++.|......+..++.......++|.+..+ .+++..++..|+..|.-+-+ ++..|-+++|+|.+.-..+...|
T Consensus 254 ~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f--~~~~~~ll~gA~~vVSm~GY----NTvCeILs~~k~aLivPr~~p~e 327 (400)
T COG4671 254 LIVTGPFMPEAQRQKLLASAPKRPHISIFEF--RNDFESLLAGARLVVSMGGY----NTVCEILSFGKPALIVPRAAPRE 327 (400)
T ss_pred EEEeCCCCCHHHHHHHHHhcccCCCeEEEEh--hhhHHHHHHhhheeeecccc----hhhhHHHhCCCceEEeccCCCcH
Confidence 4444544444444444444443445666666 46666777777776654433 35569999999998665544433
Q ss_pred -cc-cC------CceEEeCC---CHHHHHHHHHHHHhcCC
Q 027511 87 -VL-PD------DMVVLAEP---DPGDMVLAIRKAISLLP 115 (222)
Q Consensus 87 -~i-~~------~~~g~~~~---~~~~la~~i~~ll~~~~ 115 (222)
.+ .. |-..+..| +++.++++|..++..|.
T Consensus 328 EQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~ 367 (400)
T COG4671 328 EQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPS 367 (400)
T ss_pred HHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCC
Confidence 11 11 11123333 67999999999998654
No 164
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=90.95 E-value=4.1 Score=36.38 Aligned_cols=95 Identities=13% Similarity=0.204 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCCcEEE-eCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC----CccccccC
Q 027511 16 RVRLEEMREKHSLQDRVEM-LGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG----GVPEVLPD 90 (222)
Q Consensus 16 ~~~l~~~~~~~~l~~~V~~-~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g----g~~e~i~~ 90 (222)
+...+++.+.+.-++++++ .+..+..++..+++++|++|..-.+ +++=|++.|+|+|+-... ++-+.+.-
T Consensus 293 ~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH-----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~ 367 (426)
T PRK10017 293 RMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH-----SAIISMNFGTPAIAINYEHKSAGIMQQLGL 367 (426)
T ss_pred HHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch-----HHHHHHHcCCCEEEeeehHHHHHHHHHcCC
Confidence 3344556666554444443 4445567888999999998865443 567899999999975542 23333322
Q ss_pred CceEE-eC-CCHHHHHHHHHHHHhcCC
Q 027511 91 DMVVL-AE-PDPGDMVLAIRKAISLLP 115 (222)
Q Consensus 91 ~~~g~-~~-~~~~~la~~i~~ll~~~~ 115 (222)
..... .. -+++++.+.+.+++++.+
T Consensus 368 ~~~~~~~~~l~~~~Li~~v~~~~~~r~ 394 (426)
T PRK10017 368 PEMAIDIRHLLDGSLQAMVADTLGQLP 394 (426)
T ss_pred ccEEechhhCCHHHHHHHHHHHHhCHH
Confidence 22211 12 267899999999998754
No 165
>PLN02167 UDP-glycosyltransferase family protein
Probab=90.79 E-value=0.83 Score=41.32 Aligned_cols=52 Identities=10% Similarity=-0.006 Sum_probs=33.4
Q ss_pred ccHHHHHHHHhCCcEEEeCCCC----cccc-ccCCceEEeC-----------CCHHHHHHHHHHHHhc
Q 027511 62 FCIAILEAASCGLLTVSTRVGG----VPEV-LPDDMVVLAE-----------PDPGDMVLAIRKAISL 113 (222)
Q Consensus 62 ~g~~ilEAma~G~PvVa~~~gg----~~e~-i~~~~~g~~~-----------~~~~~la~~i~~ll~~ 113 (222)
--++++||+++|+|+|+....+ .... +..-+.|+.. -+.+++++++.+++.+
T Consensus 367 G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~ 434 (475)
T PLN02167 367 GWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDG 434 (475)
T ss_pred CcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcC
Confidence 3458899999999999765432 2212 2222333211 1578999999999865
No 166
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=90.07 E-value=3.4 Score=38.47 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=42.7
Q ss_pred CceEEEEEcCCcc-HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 3 VKVRFIVGGDGPK-RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 3 p~~~lvi~G~g~~-~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
++.++++....+. ++.+++..++.+. -.+.+... ++-.+++++||+.+.+| |++-+|++.+|+|.|..-
T Consensus 445 ~~l~fvvp~a~~~~~~~i~~~~~~~~~-~~~~ii~~---~~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~Y 514 (608)
T PRK01021 445 STHQLLVSSANPKYDHLILEVLQQEGC-LHSHIVPS---QFRYELMRECDCALAKC-----GTIVLETALNQTPTIVTC 514 (608)
T ss_pred cCeEEEEecCchhhHHHHHHHHhhcCC-CCeEEecC---cchHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEEE
Confidence 3566766543322 3555555543331 02333321 12368999999988765 789999999999999643
No 167
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.88 E-value=1.5 Score=36.89 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=39.5
Q ss_pred CccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcE
Q 027511 13 GPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLT 76 (222)
Q Consensus 13 g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~Pv 76 (222)
.|....+...++++ +++.++-. .+++..+|..||+.+.. -|.++.||...|+|.
T Consensus 196 ~p~l~~l~k~~~~~---~~i~~~~~--~~dma~LMke~d~aI~A-----aGstlyEa~~lgvP~ 249 (318)
T COG3980 196 NPTLKNLRKRAEKY---PNINLYID--TNDMAELMKEADLAISA-----AGSTLYEALLLGVPS 249 (318)
T ss_pred CcchhHHHHHHhhC---CCeeeEec--chhHHHHHHhcchheec-----cchHHHHHHHhcCCc
Confidence 34445555555543 56766554 58899999999998743 478999999999993
No 168
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.67 E-value=1.9 Score=37.05 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=53.0
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.++++.|+..+.+..+++.+.+.. .+.+.|..+-.++..++..||++|.+.. ..+-=|.|.|+|+|+--.
T Consensus 209 ~~Vvl~g~~~e~e~~~~i~~~~~~--~~~l~~k~sL~e~~~li~~a~l~I~~DS-----g~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 209 YQVVLFGGPDEEERAEEIAKGLPN--AVILAGKTSLEELAALIAGADLVIGNDS-----GPMHLAAALGTPTIALYG 278 (334)
T ss_pred CEEEEecChHHHHHHHHHHHhcCC--ccccCCCCCHHHHHHHHhcCCEEEccCC-----hHHHHHHHcCCCEEEEEC
Confidence 578888877666677777776543 2338899999999999999999886544 245568899999997543
No 169
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=89.42 E-value=2.3 Score=34.36 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=44.3
Q ss_pred eEEEEEcCCcc--HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 5 VRFIVGGDGPK--RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 5 ~~lvi~G~g~~--~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
.++++.|...+ .+..+++.+.... ..+.+.|..+-.++..+++.||++|.+-. ..+-=|.|.|+|+|+--
T Consensus 138 ~~vvl~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~e~~ali~~a~~~I~~Dt-----g~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 138 YRVVLLGGPEEQEKEIADQIAAGLQN-PVINLAGKTSLRELAALISRADLVIGNDT-----GPMHLAAALGTPTVALF 209 (247)
T ss_dssp -EEEE--SSHHHHHHHHHHHHTTHTT-TTEEETTTS-HHHHHHHHHTSSEEEEESS-----HHHHHHHHTT--EEEEE
T ss_pred ceEEEEccchHHHHHHHHHHHHhccc-ceEeecCCCCHHHHHHHHhcCCEEEecCC-----hHHHHHHHHhCCEEEEe
Confidence 57888887655 2333334333221 25788898899999999999999996543 35566889999999753
No 170
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.35 E-value=1.4 Score=41.00 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=90.6
Q ss_pred CCceEEEEEcC-CccHHHHHHHHHHcCC-CCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 2 RVKVRFIVGGD-GPKRVRLEEMREKHSL-QDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 2 ~p~~~lvi~G~-g~~~~~l~~~~~~~~l-~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
.|+-.|.+.-- .--...++..++..|+ +++|.|.+-...+|--+-.+-+|+.+-|...-+-- +-.|.++.|+|+|+-
T Consensus 786 VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhT-Tg~dvLw~GvPmVTm 864 (966)
T KOG4626|consen 786 VPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHT-TGMDVLWAGVPMVTM 864 (966)
T ss_pred CCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCcc-cchhhhccCCceeec
Confidence 35555555431 1112567778888888 46899988877788777888899998877743322 335778999999965
Q ss_pred CCCCccc------cccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHH--HHhcCCHHHHHHHHHHHHHHHhc
Q 027511 80 RVGGVPE------VLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHER--MKKLYNWHDVAKRTEIVYDRALE 148 (222)
Q Consensus 80 ~~gg~~e------~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~--~~~~fs~~~~~~~~~~~~~~~~~ 148 (222)
....... +..-|..-++..+.++..+.-.++-.+.+ .....+.++. -..-|+-...+..++..|..+.+
T Consensus 865 pge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~ 943 (966)
T KOG4626|consen 865 PGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWK 943 (966)
T ss_pred ccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHH
Confidence 4322211 11112222455677777777666666544 2222222221 12368999999999999987754
No 171
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=87.67 E-value=1 Score=37.55 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=41.5
Q ss_pred ChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhC-CcEEEeCC--CCccccccCCceEE
Q 027511 39 PHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCG-LLTVSTRV--GGVPEVLPDDMVVL 95 (222)
Q Consensus 39 ~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G-~PvVa~~~--gg~~e~i~~~~~g~ 95 (222)
...+..+.|+++...+.|.-...+...++|||++| +|||.++. -.+.+++.=....+
T Consensus 226 ~~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv 285 (302)
T PF03016_consen 226 SPSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSV 285 (302)
T ss_pred cchHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEE
Confidence 35678999999999999888777999999999999 57776653 23444553333333
No 172
>PLN02534 UDP-glycosyltransferase
Probab=87.51 E-value=4.3 Score=36.97 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=47.9
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccccCC-ceEEe--------
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVLPDD-MVVLA-------- 96 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i~~~-~~g~~-------- 96 (222)
.++.+.|++|+.+ ++...++..+- +.+-.++++||+++|+|+|+....+ ....+.+. ..|+.
T Consensus 344 ~g~~v~~w~pq~~---iL~h~~v~~fv--tH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~ 418 (491)
T PLN02534 344 RGLLIKGWAPQVL---ILSHPAIGGFL--THCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVR 418 (491)
T ss_pred CCeeccCCCCHHH---HhcCCccceEE--ecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccc
Confidence 4566778888744 56666662221 4455678999999999999866532 11112111 11110
Q ss_pred ---------CCCHHHHHHHHHHHHh
Q 027511 97 ---------EPDPGDMVLAIRKAIS 112 (222)
Q Consensus 97 ---------~~~~~~la~~i~~ll~ 112 (222)
.-+.+++++++++++.
T Consensus 419 ~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 419 WGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccccccCccCHHHHHHHHHHHhc
Confidence 1256899999999986
No 173
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=86.79 E-value=8.3 Score=34.83 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=66.4
Q ss_pred EEEEcC---CccHHHHHHHHHH-cCCCCcEEE-eCCCC---hhHHHHHHHhccEEEEcCCCccccHHHHHHHHhC-CcEE
Q 027511 7 FIVGGD---GPKRVRLEEMREK-HSLQDRVEM-LGAVP---HAQVRSVLISGHIFLNSSLTEAFCIAILEAASCG-LLTV 77 (222)
Q Consensus 7 lvi~G~---g~~~~~l~~~~~~-~~l~~~V~~-~g~v~---~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G-~PvV 77 (222)
+.++|. |..+..+.++.++ .+...-+.+ .|..+ ...+.+.++++..-++|.-.+...-.++||+..| +|||
T Consensus 293 ~~F~G~~~~~~iR~~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPVi 372 (464)
T KOG1021|consen 293 AFFAGAPAGGQIRSILLDLWKKDPDTEVFVNCPRGKVSCDRPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVI 372 (464)
T ss_pred EEEeccccCCcHHHHHHHHhhcCcCccccccCCCCccccCCcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEE
Confidence 344553 4566777777766 111112222 22222 4778999999999999999998888999999999 5888
Q ss_pred EeCC--CCccccccCCceEEeCCCHHHHHHHHHHHHhc
Q 027511 78 STRV--GGVPEVLPDDMVVLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 78 a~~~--gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~ 113 (222)
.++. ..+.+++.-....+..+ .+++-+.|.+.+..
T Consensus 373 isd~~~lpf~~~~d~~~fSV~v~-~~~v~~~~~~iL~~ 409 (464)
T KOG1021|consen 373 ISDGIQLPFGDVLDWTEFSVFVP-EKDVPELIKNILLS 409 (464)
T ss_pred EcCCcccCcCCCccceEEEEEEE-HHHhhhHHHHHHHh
Confidence 8775 34444444444444444 45555544555543
No 174
>PLN00164 glucosyltransferase; Provisional
Probab=86.54 E-value=2.7 Score=38.10 Aligned_cols=52 Identities=17% Similarity=0.038 Sum_probs=34.4
Q ss_pred cHHHHHHHHhCCcEEEeCC----CCcccccc-CCceEEeC---------CCHHHHHHHHHHHHhcC
Q 027511 63 CIAILEAASCGLLTVSTRV----GGVPEVLP-DDMVVLAE---------PDPGDMVLAIRKAISLL 114 (222)
Q Consensus 63 g~~ilEAma~G~PvVa~~~----gg~~e~i~-~~~~g~~~---------~~~~~la~~i~~ll~~~ 114 (222)
-++++||+++|+|+|+... .-....+. .-+.|+.. -+.+++.++|.+++.++
T Consensus 367 wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~ 432 (480)
T PLN00164 367 WNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGG 432 (480)
T ss_pred cchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCC
Confidence 4688999999999997554 22333332 22333321 15689999999999753
No 175
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=81.22 E-value=14 Score=28.59 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=58.3
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCCh------------hHHHHHHHhccEEEE-cCC----CccccHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPH------------AQVRSVLISGHIFLN-SSL----TEAFCIAI 66 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~------------~~~~~ll~~adv~v~-~s~----~E~~g~~i 66 (222)
+-++-|+|-|.--..+.++++.+|. +|.....-.. .++.+++++||++++ .+. ..-++-..
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~ 113 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGM--RVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEF 113 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCc--eeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeee
Confidence 5578999999999999999998886 4665444322 457889999999764 232 23467888
Q ss_pred HHHHHhCCcEEEeCCCCcc
Q 027511 67 LEAASCGLLTVSTRVGGVP 85 (222)
Q Consensus 67 lEAma~G~PvVa~~~gg~~ 85 (222)
++.|--|.-+|.+..|++.
T Consensus 114 l~~mk~ga~lvN~aRG~~v 132 (178)
T PF02826_consen 114 LAKMKPGAVLVNVARGELV 132 (178)
T ss_dssp HHTSTTTEEEEESSSGGGB
T ss_pred eeccccceEEEeccchhhh
Confidence 9999999988887777654
No 176
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=80.87 E-value=12 Score=27.72 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHHcCCCCcEEEeCCCChhH------------------------------HHHHHHhccEEEEc--CCCcc
Q 027511 14 PKRVRLEEMREKHSLQDRVEMLGAVPHAQ------------------------------VRSVLISGHIFLNS--SLTEA 61 (222)
Q Consensus 14 ~~~~~l~~~~~~~~l~~~V~~~g~v~~~~------------------------------~~~ll~~adv~v~~--s~~E~ 61 (222)
+-|+++++.++..+|+ |.|.+.+.+.+ -+.++..||+.|.- -.+.-
T Consensus 9 dWRe~I~~ga~~~~L~--v~F~~PvtdH~~SD~~G~~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFGekYKQ 86 (141)
T PF11071_consen 9 DWREEIKEGAKAAGLP--VEFTSPVTDHEASDDCGVDILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFGEKYKQ 86 (141)
T ss_pred hHHHHHHHHHHHcCCC--eEEecCCCCchhhhhhhHHHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEechHHHH
Confidence 4678889989888885 77777664321 23567888887642 22222
Q ss_pred ccHHH---HHHHHhCCcEEEeCCCCccccccCC--ceEEeCCCHHHHHHHHHHHH
Q 027511 62 FCIAI---LEAASCGLLTVSTRVGGVPEVLPDD--MVVLAEPDPGDMVLAIRKAI 111 (222)
Q Consensus 62 ~g~~i---lEAma~G~PvVa~~~gg~~e~i~~~--~~g~~~~~~~~la~~i~~ll 111 (222)
+. +. -=|.|.|+|.|.-.-.....-+++- .......++++.++.+..++
T Consensus 87 WN-aAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 87 WN-AAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HH-HHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 22 22 2356899999987655444333322 22345567888888887765
No 177
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=80.72 E-value=14 Score=31.57 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=37.3
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG 83 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg 83 (222)
+.+.+...-+..=+..+|..||.++.|...- .=+.||++.|+||..-...+
T Consensus 209 ~~~~~~~~~~~nPy~~~La~ad~i~VT~DSv---SMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 209 PGVYIWDGTGENPYLGFLAAADAIVVTEDSV---SMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CceEEecCCCCCcHHHHHHhCCEEEEcCccH---HHHHHHHHcCCCEEEecCCC
Confidence 4564555555556888999999998776532 24679999999999877664
No 178
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=80.64 E-value=8.4 Score=31.79 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=51.8
Q ss_pred eEEEEEcC-CccHHHHHHHHHHcCCCCcEEEeC----------------CCChhHHHHHHHhccEEEEcCCCccccHHHH
Q 027511 5 VRFIVGGD-GPKRVRLEEMREKHSLQDRVEMLG----------------AVPHAQVRSVLISGHIFLNSSLTEAFCIAIL 67 (222)
Q Consensus 5 ~~lvi~G~-g~~~~~l~~~~~~~~l~~~V~~~g----------------~v~~~~~~~ll~~adv~v~~s~~E~~g~~il 67 (222)
+++.|+|. |..-..+.+.+.+.. ++.+.+ ....+++..++..+|+.+..+..+...-.+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~---~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~ 78 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAE---DLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLENLE 78 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCC---CCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHHHHH
Confidence 57889996 877666666655431 122222 1123567777878999997777666666778
Q ss_pred HHHHhCCcEEEeCCCCc
Q 027511 68 EAASCGLLTVSTRVGGV 84 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~ 84 (222)
.|+..|+|+|....|-.
T Consensus 79 ~al~~G~~vvigttG~s 95 (257)
T PRK00048 79 FALEHGKPLVIGTTGFT 95 (257)
T ss_pred HHHHcCCCEEEECCCCC
Confidence 89999999997654433
No 179
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=80.03 E-value=28 Score=27.61 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=52.3
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHH-----------------HHHhccEEEEcCCCccccHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRS-----------------VLISGHIFLNSSLTEAFCIAI 66 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~-----------------ll~~adv~v~~s~~E~~g~~i 66 (222)
+-+++|+|.|..-...-+...+.+ .+|+....-..+++.+ .+..+|+++.++..+.....+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~i 87 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQV 87 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHHH
Confidence 457889998876654444444444 3466554332233333 345567777776666666777
Q ss_pred HHHHHhCCcEEEeCCCCccccccC
Q 027511 67 LEAASCGLLTVSTRVGGVPEVLPD 90 (222)
Q Consensus 67 lEAma~G~PvVa~~~gg~~e~i~~ 90 (222)
.+....|.+|-..+.....+++-+
T Consensus 88 ~~~a~~~~lvn~~d~~~~~~f~~P 111 (202)
T PRK06718 88 KEDLPENALFNVITDAESGNVVFP 111 (202)
T ss_pred HHHHHhCCcEEECCCCccCeEEEe
Confidence 777778888888777666555443
No 180
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=79.54 E-value=4.6 Score=35.03 Aligned_cols=33 Identities=27% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 43 VRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 43 ~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
..++|+.||+.+..| |.+-+|++.+|+|.|...
T Consensus 229 ~~~~m~~aDlal~~S-----GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 229 THKALLEAEFAFICS-----GTATLEAALIGTPFVLAY 261 (347)
T ss_pred HHHHHHhhhHHHhcC-----cHHHHHHHHhCCCEEEEE
Confidence 346777788776554 677789999999999744
No 181
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=79.34 E-value=17 Score=34.89 Aligned_cols=84 Identities=18% Similarity=0.267 Sum_probs=72.8
Q ss_pred EEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhC----CcEEEeCCCCccccccCCceEEeCCCHHHHHHHH
Q 027511 32 VEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCG----LLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAI 107 (222)
Q Consensus 32 V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G----~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i 107 (222)
+.++..++..++.+++.-+|+.+..+.-++..++.+|...|. .+.|.+..-|-.+.+.++...+.+-+.+.++..|
T Consensus 355 ~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d~aivvnpw~~~~~~~~i 434 (732)
T KOG1050|consen 355 HSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLEDAAIVVNPWDGDEFAILI 434 (732)
T ss_pred EEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccccccCEEECCcchHHHHHHH
Confidence 345778899999999999999999999999999999999885 5677888888888888887766666899999999
Q ss_pred HHHHhcCC
Q 027511 108 RKAISLLP 115 (222)
Q Consensus 108 ~~ll~~~~ 115 (222)
..++..+.
T Consensus 435 ~~al~~s~ 442 (732)
T KOG1050|consen 435 SKALTMSD 442 (732)
T ss_pred HHHhhcCH
Confidence 99999866
No 182
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=79.01 E-value=22 Score=25.80 Aligned_cols=66 Identities=24% Similarity=0.227 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcccc
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEV 87 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~ 87 (222)
++..+..++ +. .|.+....+.+++...+..+|+++..+.. .+.-.+++++ -++-.|++...|...+
T Consensus 9 ~~~~~~l~~-~~--~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~i 74 (133)
T PF00389_consen 9 DEEIERLEE-GF--EVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVDNI 74 (133)
T ss_dssp HHHHHHHHH-TS--EEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCTTB
T ss_pred HHHHHHHHC-Cc--eEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccCcc
Confidence 444455555 44 58898988999999999999999975554 5778888888 8999999988888654
No 183
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.83 E-value=23 Score=30.34 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC--------------CccccHHHHHHHHhCCcEEEeCCC
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL--------------TEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~--------------~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
..+....++++ +.+.+. ..+..+++...+..+.|-. ..+-|.-.-||+..|+|.|++.-|
T Consensus 207 ~~li~~l~k~g----iV~ipr--~~~~~eife~~~n~i~pk~~vD~l~Llyya~lvig~ggTMarEaAlLGtpaIs~~pG 280 (346)
T COG1817 207 PDLIKELKKYG----IVLIPR--EKEQAEIFEGYRNIIIPKKAVDTLSLLYYATLVIGAGGTMAREAALLGTPAISCYPG 280 (346)
T ss_pred HHHHHHHHhCc----EEEecC--chhHHHHHhhhccccCCcccccHHHHHhhhheeecCCchHHHHHHHhCCceEEecCC
Confidence 33444444444 334444 3455566666665543221 234466678999999999998854
Q ss_pred ---CccccccCCceEEeCCCHHHHHHHHHHHHhcCC
Q 027511 83 ---GVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP 115 (222)
Q Consensus 83 ---g~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~ 115 (222)
+..+.+.+.+..+-..|+.+..+...+.+..++
T Consensus 281 kll~vdk~lie~G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 281 KLLAVDKYLIEKGLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred ccccccHHHHhcCceeecCCHHHHHHHHHHHhhchh
Confidence 344455555555555677666666666665543
No 184
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=78.70 E-value=34 Score=27.78 Aligned_cols=85 Identities=12% Similarity=0.026 Sum_probs=48.4
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHH-----------------HHhccEEEEcCCCccccHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSV-----------------LISGHIFLNSSLTEAFCIAI 66 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~l-----------------l~~adv~v~~s~~E~~g~~i 66 (222)
+-+++++|+|.....-....-+.+ .+|+....--.+++..+ +..+++.+.++..+...-.+
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I 102 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKI 102 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHH
Confidence 567899998865533222222233 45666544334455443 34556555555555555555
Q ss_pred HHH-HHhCCcEEEeCCCCccccccC
Q 027511 67 LEA-ASCGLLTVSTRVGGVPEVLPD 90 (222)
Q Consensus 67 lEA-ma~G~PvVa~~~gg~~e~i~~ 90 (222)
.+. -+.|.+|...+.....+++-+
T Consensus 103 ~~~a~~~~~lvn~vd~p~~~dFi~P 127 (223)
T PRK05562 103 RKHCDRLYKLYIDCSDYKKGLCIIP 127 (223)
T ss_pred HHHHHHcCCeEEEcCCcccCeEEee
Confidence 544 466999998877666665443
No 185
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=78.12 E-value=4.8 Score=33.26 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=27.4
Q ss_pred hHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 41 AQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 41 ~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
-...+++..||.++--+ +.+-+||+.+|+||++-..
T Consensus 191 ~~~~~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 191 VNLYELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred CCHHHHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecC
Confidence 45778888888876332 4588999999999998544
No 186
>PLN03015 UDP-glucosyl transferase
Probab=78.09 E-value=4.9 Score=36.37 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=44.2
Q ss_pred EEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----ccccc-cCCceEEeC--------C
Q 027511 32 VEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEVL-PDDMVVLAE--------P 98 (222)
Q Consensus 32 V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~i-~~~~~g~~~--------~ 98 (222)
+.+.+|+|+.++ |....+..+- +..--++.+||+++|+|+|+....+ ....+ ..-+.|+.. -
T Consensus 337 l~v~~W~PQ~~v---L~h~~vg~fv--tH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQVEI---LSHRSIGGFL--SHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCHHHH---hccCccCeEE--ecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 455677776654 3333332211 3334468899999999999866532 22222 121233221 1
Q ss_pred CHHHHHHHHHHHHh
Q 027511 99 DPGDMVLAIRKAIS 112 (222)
Q Consensus 99 ~~~~la~~i~~ll~ 112 (222)
+.+++.+++++++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 55899999999985
No 187
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=77.69 E-value=28 Score=26.27 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhcc-----EEEEcCCCccccHHHHHHH-HhCCcEE---EeCCCCcc--
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGH-----IFLNSSLTEAFCIAILEAA-SCGLLTV---STRVGGVP-- 85 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~ad-----v~v~~s~~E~~g~~ilEAm-a~G~PvV---a~~~gg~~-- 85 (222)
+.+++.++++++ .+.|.-+=...++-+.++++. +.++|.-+.+.++++.+|+ +.++|+| -||.-.-.
T Consensus 33 ~~~~~~a~~~g~--~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~f 110 (146)
T PRK05395 33 ALLEEEAAELGV--ELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAREEF 110 (146)
T ss_pred HHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccc
Confidence 344444555565 477877766778888887763 5789999999999999998 4789999 34433222
Q ss_pred ---ccccCCceEEeCC-CHHHHHHHHHHHHh
Q 027511 86 ---EVLPDDMVVLAEP-DPGDMVLAIRKAIS 112 (222)
Q Consensus 86 ---e~i~~~~~g~~~~-~~~~la~~i~~ll~ 112 (222)
.++.+-..|.... ..+...-++..+++
T Consensus 111 R~~S~is~~a~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK05395 111 RHHSYISDVAVGVICGFGADGYLLALEALAE 141 (146)
T ss_pred cccccccccceEEEeeCCHHhHHHHHHHHHH
Confidence 2344455566555 56666666666654
No 188
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=77.34 E-value=16 Score=31.76 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=45.7
Q ss_pred CCce-EEEEEcCCccHHHHHHHHHHcCCCCcEEE--eCCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEE
Q 027511 2 RVKV-RFIVGGDGPKRVRLEEMREKHSLQDRVEM--LGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTV 77 (222)
Q Consensus 2 ~p~~-~lvi~G~g~~~~~l~~~~~~~~l~~~V~~--~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvV 77 (222)
+++. +++++|. ..+.+++++++.. ..++.+ ...-+.+++.++++.+|++|++.-.- ++..+++ |+..|++.|
T Consensus 20 ~~~~~~v~va~r--~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yv 95 (386)
T PF03435_consen 20 RGPFEEVTVADR--NPEKAERLAEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYV 95 (386)
T ss_dssp TTCE-EEEEEES--SHHHHHHHHT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEE
T ss_pred CCCCCcEEEEEC--CHHHHHHHHhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCee
Confidence 3444 7888886 4456666665532 233443 44445677999999999999877544 5555555 567899999
Q ss_pred Ee
Q 027511 78 ST 79 (222)
Q Consensus 78 a~ 79 (222)
-+
T Consensus 96 D~ 97 (386)
T PF03435_consen 96 DT 97 (386)
T ss_dssp ES
T ss_pred cc
Confidence 73
No 189
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=77.31 E-value=13 Score=26.14 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=47.3
Q ss_pred EEEEcCCccH----HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeC
Q 027511 7 FIVGGDGPKR----VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTR 80 (222)
Q Consensus 7 lvi~G~g~~~----~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~ 80 (222)
++++|.|... +.+++.+++.|++ +.+. ..+..++...+..+|+++.++-.-..=-.+-| +-..|+||..-+
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~--~~i~-a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVP--LEAA-AGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCc--EEEE-EeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 4555666444 6777888888885 4332 44568888999999999887775443333433 345688998765
No 190
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=76.11 E-value=14 Score=32.23 Aligned_cols=105 Identities=13% Similarity=0.033 Sum_probs=66.7
Q ss_pred ceEEEEEcCCccHHHHHHHHHHc---CCCCc---EEEeCCCChhHHHHHHHhccEEEEc---CCCccccHHHHHHHHhC-
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKH---SLQDR---VEMLGAVPHAQVRSVLISGHIFLNS---SLTEAFCIAILEAASCG- 73 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~---~l~~~---V~~~g~v~~~~~~~ll~~adv~v~~---s~~E~~g~~ilEAma~G- 73 (222)
+-.++|++.|.......+.++.+ ++.-. +.++-.++.+.+.+.+++++-+|.. ...-++|-.+.|.++-.
T Consensus 233 G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~ 312 (355)
T PTZ00182 233 GKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDC 312 (355)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhh
Confidence 34577888887776666666554 44332 4456667778888888888765543 33567888888888654
Q ss_pred -----CcEEEeCCCCccccccCCc--eEEeCCCHHHHHHHHHHH
Q 027511 74 -----LLTVSTRVGGVPEVLPDDM--VVLAEPDPGDMVLAIRKA 110 (222)
Q Consensus 74 -----~PvVa~~~gg~~e~i~~~~--~g~~~~~~~~la~~i~~l 110 (222)
.|+. +.|.....++... -....++.+.+.+++.++
T Consensus 313 ~~~l~~pv~--ri~~~d~~~p~~~~le~~~~~~~~~i~~~~~~~ 354 (355)
T PTZ00182 313 FLYLEAPIK--RVCGADTPFPYAKNLEPAYLPDKEKVVEAAKRV 354 (355)
T ss_pred hhhcCCCeE--EeCCCCccCCCChHHHHHhCCCHHHHHHHHHHh
Confidence 3554 3344334444332 224567889999888765
No 191
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=75.73 E-value=13 Score=25.71 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=45.8
Q ss_pred EEEEcCCccH----HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeCC
Q 027511 7 FIVGGDGPKR----VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTRV 81 (222)
Q Consensus 7 lvi~G~g~~~----~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~~ 81 (222)
+++.|.|-.. +.+++.+++++++-.|.-.+. .++.......|+++.++.....=-.+-| +.-.++||..-+.
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~---~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPE---SELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecH---HHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcCh
Confidence 4666766433 567777888888644544443 6677778889998887764332223333 3457889887554
No 192
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=74.75 E-value=12 Score=23.27 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=39.3
Q ss_pred EEEEEc-CCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 6 RFIVGG-DGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 6 ~lvi~G-~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
.+.+.| .++++..+.++++.+|- .+.+.++. ....+|. .+..|-+.--|...|+|||..+
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg----~~~~~lt~--------~~THLI~---~~~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGG----KYSKDLTK--------KTTHLIC---SSPEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT-----EEESSSST--------T-SEEEE---ES--HHHHHHHHHCTSEEEEHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCC----EEeccccC--------CceEEEE---eCCCcHHHHHHHHCCCcEECCC
Confidence 455666 55668889999988763 45566533 3344444 5556788889999999999764
No 193
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=73.69 E-value=31 Score=29.38 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=58.9
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC--------ChhHHHHHHHhccEEEE-cCC-Cc---cccHHHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV--------PHAQVRSVLISGHIFLN-SSL-TE---AFCIAILEAA 70 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v--------~~~~~~~ll~~adv~v~-~s~-~E---~~g~~ilEAm 70 (222)
+-.+-|+|-|.--..+.++++.+|. +|...... ...++.++++.||+++. .+. .| -++-..++.|
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fgm--~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~M 222 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFGA--KVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLL 222 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCC--EEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhC
Confidence 3467899999888888888887775 46554321 23468999999999653 333 33 3688899999
Q ss_pred HhCCcEEEeCCCCccc
Q 027511 71 SCGLLTVSTRVGGVPE 86 (222)
Q Consensus 71 a~G~PvVa~~~gg~~e 86 (222)
--|.-+|.+..|++.+
T Consensus 223 k~~a~lIN~aRG~vVD 238 (311)
T PRK08410 223 KDGAILINVGRGGIVN 238 (311)
T ss_pred CCCeEEEECCCccccC
Confidence 9999999888876653
No 194
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=73.45 E-value=50 Score=27.10 Aligned_cols=79 Identities=14% Similarity=0.070 Sum_probs=48.9
Q ss_pred CCCcEEEeCC--CChhHHHHHHHhccEEEE--cCC-CccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHH
Q 027511 28 LQDRVEMLGA--VPHAQVRSVLISGHIFLN--SSL-TEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGD 102 (222)
Q Consensus 28 l~~~V~~~g~--v~~~~~~~ll~~adv~v~--~s~-~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~ 102 (222)
+.++|.+.|. ++.+++.+.+..+|++|. ||. ......-+.+|-..|.|+|.-|.+..... +....+...+..+
T Consensus 149 lrP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~--~~~~~~i~g~~~~ 226 (242)
T PTZ00408 149 LRPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNY--SQFDESIYGKASV 226 (242)
T ss_pred CCCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCC--ccCCEEEECCHHH
Confidence 5567888887 466778888999999764 444 24444445678889999987776642211 1122233345555
Q ss_pred HHHHHH
Q 027511 103 MVLAIR 108 (222)
Q Consensus 103 la~~i~ 108 (222)
....+.
T Consensus 227 ~l~~l~ 232 (242)
T PTZ00408 227 IVPAWV 232 (242)
T ss_pred HHHHHH
Confidence 555443
No 195
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=73.22 E-value=26 Score=29.43 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=47.0
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC---------------ChhHHHHHHHhccEEEEcCCCccccHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV---------------PHAQVRSVLISGHIFLNSSLTEAFCIAILE 68 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v---------------~~~~~~~ll~~adv~v~~s~~E~~g~~ilE 68 (222)
+-++.|+|.|..-..+......+|. +|.....- +.+++.+++.++|+++++.-..-+.-..++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~--~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~ 228 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGA--RVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLS 228 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHHh
Confidence 4578899988877777777777774 46554332 223567788899999986543333444566
Q ss_pred HHHhCCcEE
Q 027511 69 AASCGLLTV 77 (222)
Q Consensus 69 Ama~G~PvV 77 (222)
.|.-|.-+|
T Consensus 229 ~~k~~aliI 237 (287)
T TIGR02853 229 KLPKHAVII 237 (287)
T ss_pred cCCCCeEEE
Confidence 666665555
No 196
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=72.44 E-value=12 Score=31.13 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=49.4
Q ss_pred eEEEEEc-CCccHHHHHHHHHHcCCCCcEEEeCCCC------------------------hhHHHHHHHhccEEEEcCCC
Q 027511 5 VRFIVGG-DGPKRVRLEEMREKHSLQDRVEMLGAVP------------------------HAQVRSVLISGHIFLNSSLT 59 (222)
Q Consensus 5 ~~lvi~G-~g~~~~~l~~~~~~~~l~~~V~~~g~v~------------------------~~~~~~ll~~adv~v~~s~~ 59 (222)
+++.|+| .|..-..+.+.+.+.. .+.+.+-++ .+++..+...+|+.|-.+..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~---~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE---GLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC---CCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence 5788999 6877777776665431 122222111 12333443457999988887
Q ss_pred ccccHHHHHHHHhCCcEEEeCCC
Q 027511 60 EAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 60 E~~g~~ilEAma~G~PvVa~~~g 82 (222)
+..--.+..|+..|+|+|+...|
T Consensus 79 ~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEECCC
Confidence 87777889999999999975555
No 197
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=71.64 E-value=11 Score=33.82 Aligned_cols=82 Identities=13% Similarity=0.066 Sum_probs=46.5
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC-CC---Ccccccc-CCceEEeCC---CHH
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR-VG---GVPEVLP-DDMVVLAEP---DPG 101 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~-~g---g~~e~i~-~~~~g~~~~---~~~ 101 (222)
++|...+|+|+.++. +....+..+-+ +-|+ .+++|++.+|+|+|+.. .| -....+. .+..++... +..
T Consensus 335 ~nV~~~~W~PQ~~ll--l~H~~v~~FvT-HgG~-nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~ 410 (496)
T KOG1192|consen 335 GNVVLSKWAPQNDLL--LDHPAVGGFVT-HGGW-NSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSE 410 (496)
T ss_pred CceEEecCCCcHHHh--cCCCcCcEEEE-CCcc-cHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcH
Confidence 468888999888766 22221222111 2233 35599999999999533 33 2223333 334444333 233
Q ss_pred HHHHHHHHHHhcCC
Q 027511 102 DMVLAIRKAISLLP 115 (222)
Q Consensus 102 ~la~~i~~ll~~~~ 115 (222)
++.+++..++.+++
T Consensus 411 ~~~~~~~~il~~~~ 424 (496)
T KOG1192|consen 411 ELLEAIKEILENEE 424 (496)
T ss_pred HHHHHHHHHHcChH
Confidence 37888888887754
No 198
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=71.47 E-value=41 Score=25.25 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhc----c-EEEEcCCCccccHHHHHHH-HhCCcEE---EeCCCCc---
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISG----H-IFLNSSLTEAFCIAILEAA-SCGLLTV---STRVGGV--- 84 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~a----d-v~v~~s~~E~~g~~ilEAm-a~G~PvV---a~~~gg~--- 84 (222)
+.+++.++++++ .+.|.-+=...++-+.++++ | +.++|.-+.+.++++.+|+ +.++|+| -||.-.-
T Consensus 31 ~~~~~~a~~~g~--~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aRE~f 108 (141)
T TIGR01088 31 EIIETFAAQLNV--ELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAREEF 108 (141)
T ss_pred HHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccc
Confidence 344455555565 47787776677888888776 2 5789999999999999997 5789999 3443222
Q ss_pred c--ccccCCceEEeCC-CHHHHHHHHHHHHh
Q 027511 85 P--EVLPDDMVVLAEP-DPGDMVLAIRKAIS 112 (222)
Q Consensus 85 ~--e~i~~~~~g~~~~-~~~~la~~i~~ll~ 112 (222)
+ .++.+-..|.... .++...-++..+++
T Consensus 109 R~~S~is~~~~G~I~G~G~~gY~lAl~a~~~ 139 (141)
T TIGR01088 109 RHHSYTAPVAGGVIVGLGAQGYLLALRYLVE 139 (141)
T ss_pred cccccccccceEEEeecCHHHHHHHHHHHHH
Confidence 1 3444445565555 56666666666554
No 199
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=71.45 E-value=33 Score=27.28 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=35.7
Q ss_pred EEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 32 VEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 32 V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
.......+..++..++++++++|....+ ..+=|+++|+|+|+-..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~Is~RlH-----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 240 IIIDYSLSPDELLELISQADLVISMRLH-----GAILALSLGVPVIAISY 284 (286)
T ss_pred eEecCCCCHHHHHHHHhcCCEEEecCCH-----HHHHHHHcCCCEEEEec
Confidence 4445666889999999999999977664 45678999999997553
No 200
>PRK06932 glycerate dehydrogenase; Provisional
Probab=71.44 E-value=32 Score=29.31 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=59.1
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCC-------hhHHHHHHHhccEEEE-cCC-Ccc---ccHHHHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVP-------HAQVRSVLISGHIFLN-SSL-TEA---FCIAILEAAS 71 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~-------~~~~~~ll~~adv~v~-~s~-~E~---~g~~ilEAma 71 (222)
.-++-|+|-|.--.++.++++.+|. +|......+ ..++.++++.||+++. .+. .++ ++-..++.|-
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~--~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk 224 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGM--KVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMK 224 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCC--EEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCC
Confidence 3478899999888888888887776 465544321 2357899999999763 333 233 6788899999
Q ss_pred hCCcEEEeCCCCccc
Q 027511 72 CGLLTVSTRVGGVPE 86 (222)
Q Consensus 72 ~G~PvVa~~~gg~~e 86 (222)
-|.-+|.+..|++.+
T Consensus 225 ~ga~lIN~aRG~~Vd 239 (314)
T PRK06932 225 PTAFLINTGRGPLVD 239 (314)
T ss_pred CCeEEEECCCccccC
Confidence 999999888887554
No 201
>PLN02928 oxidoreductase family protein
Probab=71.42 E-value=29 Score=30.07 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=57.0
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC------------------------ChhHHHHHHHhccEEEE-cCC
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV------------------------PHAQVRSVLISGHIFLN-SSL 58 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v------------------------~~~~~~~ll~~adv~v~-~s~ 58 (222)
+-++.|+|-|..-..+.+.+..+|. +|.....- +..++.+++++||+++. .+.
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPl 236 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTL 236 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCC
Confidence 3478899999888888888887775 45543321 23467899999999765 222
Q ss_pred -Cc---cccHHHHHHHHhCCcEEEeCCCCcc
Q 027511 59 -TE---AFCIAILEAASCGLLTVSTRVGGVP 85 (222)
Q Consensus 59 -~E---~~g~~ilEAma~G~PvVa~~~gg~~ 85 (222)
.+ -++-..+..|--|.-+|-+..|++.
T Consensus 237 t~~T~~li~~~~l~~Mk~ga~lINvaRG~lV 267 (347)
T PLN02928 237 TKETAGIVNDEFLSSMKKGALLVNIARGGLL 267 (347)
T ss_pred ChHhhcccCHHHHhcCCCCeEEEECCCcccc
Confidence 23 3567888888888888877777654
No 202
>PRK06487 glycerate dehydrogenase; Provisional
Probab=71.36 E-value=28 Score=29.68 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=58.7
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCC------CChhHHHHHHHhccEEEE-cCC-Cc---cccHHHHHHHHhC
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGA------VPHAQVRSVLISGHIFLN-SSL-TE---AFCIAILEAASCG 73 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~------v~~~~~~~ll~~adv~v~-~s~-~E---~~g~~ilEAma~G 73 (222)
-++-|+|-|.--.++.++++.+|. +|..... ....++.++++.||+++. .+. .+ -++-..+..|--|
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm--~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~g 226 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGM--RVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPG 226 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCC--EEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCC
Confidence 468899999888888888887776 4554432 123457899999999764 333 23 3688899999999
Q ss_pred CcEEEeCCCCccc
Q 027511 74 LLTVSTRVGGVPE 86 (222)
Q Consensus 74 ~PvVa~~~gg~~e 86 (222)
.-+|.+..|++.+
T Consensus 227 a~lIN~aRG~vVd 239 (317)
T PRK06487 227 ALLINTARGGLVD 239 (317)
T ss_pred eEEEECCCccccC
Confidence 9899888887654
No 203
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=70.90 E-value=28 Score=29.06 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=25.9
Q ss_pred CChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 38 VPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 38 v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
.+.+++..++++++++|-...+ .++=|+..|+|+|+-
T Consensus 239 ~~~~e~~~~i~~~~~vI~~RlH-----~~I~A~~~gvP~i~i 275 (298)
T TIGR03609 239 LDPEELLGLFASARLVIGMRLH-----ALILAAAAGVPFVAL 275 (298)
T ss_pred CCHHHHHHHHhhCCEEEEechH-----HHHHHHHcCCCEEEe
Confidence 3456677777888877654442 457788999999865
No 204
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=70.83 E-value=45 Score=28.63 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=57.6
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCC-CCh-----------hHHHHHHHhccEEE-EcC-CCccc---cHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGA-VPH-----------AQVRSVLISGHIFL-NSS-LTEAF---CIAI 66 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~-v~~-----------~~~~~ll~~adv~v-~~s-~~E~~---g~~i 66 (222)
.-.+-|+|-|.--.++.+.++.+|. +|..... .+. +++..++++||+++ +++ ..|+. +-..
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~ 219 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGM--KVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEE 219 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--eEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHH
Confidence 3468899999888999999998886 3554444 322 45899999999965 333 34554 5667
Q ss_pred HHHHHhCCcEEEeCCCCccc
Q 027511 67 LEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 67 lEAma~G~PvVa~~~gg~~e 86 (222)
+..|--|.-+|-+..|++.+
T Consensus 220 ~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 220 LAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HhhCCCCeEEEECCCcceec
Confidence 78887788777777776554
No 205
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=70.56 E-value=53 Score=26.20 Aligned_cols=66 Identities=5% Similarity=-0.008 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHh-----ccEEE-EcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLIS-----GHIFL-NSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~-----adv~v-~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
.-+++.+++++..-.+.+...-+.+.....+.+ .|.++ .|...+...-.+-++...|+|||..+.+
T Consensus 18 ~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 456667777776533322344444444444433 47554 5666667777788888899999998887
No 206
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=70.36 E-value=19 Score=24.85 Aligned_cols=72 Identities=8% Similarity=0.089 Sum_probs=44.7
Q ss_pred EEEEcCCccH----HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHH--HHhCCcEEEeC
Q 027511 7 FIVGGDGPKR----VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEA--ASCGLLTVSTR 80 (222)
Q Consensus 7 lvi~G~g~~~----~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEA--ma~G~PvVa~~ 80 (222)
+++.|.|-.. ..+++.+++.+++-.|.-.+ -.++......+|+++.++..... ..-++. -..|+||+.-+
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~---~~~~~~~~~~~Dvill~pqi~~~-~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS---YGAAGEKLDDADVVLLAPQVAYM-LPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec---HHHHHhhcCCCCEEEECchHHHH-HHHHHHHhhhcCCCEEEeC
Confidence 4555666433 56667778888864444333 46777788889999887764432 222333 34578999765
Q ss_pred CC
Q 027511 81 VG 82 (222)
Q Consensus 81 ~g 82 (222)
..
T Consensus 83 ~~ 84 (95)
T TIGR00853 83 GA 84 (95)
T ss_pred hh
Confidence 43
No 207
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=70.34 E-value=9.1 Score=28.01 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=36.0
Q ss_pred EEEEcCC----ccHHHHHHHHHHcCCC----------------CcEEEeCCCChhHHHHHHHhccEEEEc
Q 027511 7 FIVGGDG----PKRVRLEEMREKHSLQ----------------DRVEMLGAVPHAQVRSVLISGHIFLNS 56 (222)
Q Consensus 7 lvi~G~g----~~~~~l~~~~~~~~l~----------------~~V~~~g~v~~~~~~~ll~~adv~v~~ 56 (222)
++++|.| ...+++.+++++++.+ ..+-+.|..++....+++++||+.+.-
T Consensus 15 ~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 15 VILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAI 84 (137)
T ss_dssp EEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEE
T ss_pred EEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEE
Confidence 6778855 3568999999998773 123345555678899999999998763
No 208
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=69.57 E-value=46 Score=25.12 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhc----c-EEEEcCCCccccHHHHHHH-HhCCcEE---EeCCCC---c
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISG----H-IFLNSSLTEAFCIAILEAA-SCGLLTV---STRVGG---V 84 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~a----d-v~v~~s~~E~~g~~ilEAm-a~G~PvV---a~~~gg---~ 84 (222)
..+++.+++++. .+.|.-+=...++-+.++++ | +.++|.-+.+.++++.+|+ +.++|+| -||.-. +
T Consensus 33 ~~~~~~a~~~g~--~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~f 110 (146)
T PRK13015 33 ALCRAAAEALGL--EVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAREAF 110 (146)
T ss_pred HHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccc
Confidence 344445555555 47777776677777777665 3 5788999999999999997 5789999 333322 2
Q ss_pred c--ccccCCceEEeCC-CHHHHHHHHHHHHh
Q 027511 85 P--EVLPDDMVVLAEP-DPGDMVLAIRKAIS 112 (222)
Q Consensus 85 ~--e~i~~~~~g~~~~-~~~~la~~i~~ll~ 112 (222)
+ .++.+-..|.... -++...-++..+++
T Consensus 111 R~~S~is~~~~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK13015 111 RHHSYVSAIADGVICGLGTEGYRLALRRLAT 141 (146)
T ss_pred cccccccCceeEEEeeCCHHHHHHHHHHHHH
Confidence 2 3555556666655 56666666666654
No 209
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=69.55 E-value=23 Score=21.54 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=41.2
Q ss_pred ceEEEEEcC--CccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 4 KVRFIVGGD--GPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 4 ~~~lvi~G~--g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+..|.+.|. +..+..+++++..+|- ++. ..++ ..++.+|.+.....- ....|...|+|+|..+
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg--~v~--~~~~--------~~~thvI~~~~~~~~--~~~~~~~~~~~iV~~~ 65 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGG--KVT--SSVS--------KKTTHVIVGSDAGPK--KLLKAIKLGIPIVTPE 65 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCC--EEe--cccc--------CCceEEEECCCCCch--HHHHHHHcCCeEecHH
Confidence 357888885 5888999999998874 232 2322 344555555443221 1678889999999754
No 210
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=69.45 E-value=40 Score=28.39 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=28.6
Q ss_pred HHHHHHH--hccEEEEcCC-CccccHHHHHHHH--hCCcEE
Q 027511 42 QVRSVLI--SGHIFLNSSL-TEAFCIAILEAAS--CGLLTV 77 (222)
Q Consensus 42 ~~~~ll~--~adv~v~~s~-~E~~g~~ilEAma--~G~PvV 77 (222)
++.+.++ .+|++|-.|. ...|.--+++.|+ |..|+|
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PII 136 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPII 136 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEE
Confidence 4666677 7799999886 5678889999998 577887
No 211
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=68.94 E-value=54 Score=28.38 Aligned_cols=137 Identities=12% Similarity=-0.010 Sum_probs=71.0
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC----ChhHHH----HHHHhccEEEEcC--CCccccHHHHHHHHh
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV----PHAQVR----SVLISGHIFLNSS--LTEAFCIAILEAASC 72 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v----~~~~~~----~ll~~adv~v~~s--~~E~~g~~ilEAma~ 72 (222)
.+-+++++|.|..-...-+...+.|.. +|.+...- +.+++. .+...+|+.+..| ..-..++...|.+.-
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~-~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~ 251 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYS-RITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLAD 251 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCC-EEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhh
Confidence 356899999998777666666666663 46654432 334433 5567899999853 223334444454442
Q ss_pred CCcEEEeCCCCcccccc-CCceEEeCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 027511 73 GLLTVSTRVGGVPEVLP-DDMVVLAEPDPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTEIVYDRAL 147 (222)
Q Consensus 73 G~PvVa~~~gg~~e~i~-~~~~g~~~~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 147 (222)
-.+-+--|..-++++-+ ....+...-|.+++.+.+.+=+... ..+..+...-.+..+.++-+.|++-.
T Consensus 252 ~~~r~~iDLAvPRdId~v~~~~~v~Ly~iDdL~~i~~~n~~~R-------~~~~~~ae~iI~~~~~~~~~~~~~~~ 320 (338)
T PRK00676 252 IPDRIVFDFNVPRTFPWSETPFPHRYLDMDFISEWVQKHLQCR-------KEVNNKHKLSLREAAYKQWESYEKKL 320 (338)
T ss_pred ccCcEEEEecCCCCCccccccCCcEEEEhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22134456666666532 1111111226677766665444321 11111122333455566666665543
No 212
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=68.82 E-value=49 Score=28.91 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=54.4
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeC--------------------CCChhHHHHHHHhccEEEEcCCC---
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLG--------------------AVPHAQVRSVLISGHIFLNSSLT--- 59 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g--------------------~v~~~~~~~ll~~adv~v~~s~~--- 59 (222)
+..+++|+|.|..-....+.+..+|. +|.... ..+.+++.+.+..+|+++.+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa--~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA--TVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 45678889988777667777776664 233322 12235677888899999987532
Q ss_pred cc---ccHHHHHHHHhCCcEE--EeCCCCcccccc
Q 027511 60 EA---FCIAILEAASCGLLTV--STRVGGVPEVLP 89 (222)
Q Consensus 60 E~---~g~~ilEAma~G~PvV--a~~~gg~~e~i~ 89 (222)
.+ +.-..++.|.-|..+| +.+.||..|...
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~d~GG~~e~~~ 278 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAIDQGGCVETSR 278 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEecCCCCCccCCc
Confidence 11 2344566666665555 678888877654
No 213
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=68.08 E-value=54 Score=29.26 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=51.2
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEe----------------CCCChhHHHHHHHhccEEEEcCC--CccccHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEML----------------GAVPHAQVRSVLISGHIFLNSSL--TEAFCIA 65 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~----------------g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~ 65 (222)
+.+++++|.|.+-........+.|.. +|.+. ..++-+++...+..+|+++..+. .-..+..
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~-~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~ 256 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVK-KITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITRE 256 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccCHH
Confidence 45688888876554333333333332 23322 23355889999999999887644 3334545
Q ss_pred HHHHH-HhCCcEEEeCCCCccccccC
Q 027511 66 ILEAA-SCGLLTVSTRVGGVPEVLPD 90 (222)
Q Consensus 66 ilEAm-a~G~PvVa~~~gg~~e~i~~ 90 (222)
.+|.. .-....+.-|.+-++++-++
T Consensus 257 ~ve~a~~~r~~~livDiavPRdie~~ 282 (414)
T COG0373 257 MVERALKIRKRLLIVDIAVPRDVEPE 282 (414)
T ss_pred HHHHHHhcccCeEEEEecCCCCCCcc
Confidence 55544 33344577788888877654
No 214
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=67.49 E-value=64 Score=28.74 Aligned_cols=103 Identities=9% Similarity=-0.023 Sum_probs=59.8
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeC-----------------CCChhHHHHHHHhccEEEEcCCCccccHH
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLG-----------------AVPHAQVRSVLISGHIFLNSSLTEAFCIA 65 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g-----------------~v~~~~~~~ll~~adv~v~~s~~E~~g~~ 65 (222)
.+-+++++|.|..-...-......|.. ++.+.. .++-+++...+..+|++++++...++=+.
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~-~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi~ 258 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPK-QIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIVT 258 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeEC
Confidence 356788888876655444444444432 233222 12346778889999999998775444222
Q ss_pred HHHHHHhCCcEEEeCCCCccccccCCce--EEeCCCHHHHHHHHH
Q 027511 66 ILEAASCGLLTVSTRVGGVPEVLPDDMV--VLAEPDPGDMVLAIR 108 (222)
Q Consensus 66 ilEAma~G~PvVa~~~gg~~e~i~~~~~--g~~~~~~~~la~~i~ 108 (222)
..+.-+.|.+--|.+-++++-+.-.. ++..-|.+++.+.+.
T Consensus 259 --~~~~~~~~~~~iDLavPRdidp~v~~l~~v~l~~iDdl~~i~~ 301 (414)
T PRK13940 259 --CKYVGDKPRVFIDISIPQALDPKLGELEQNVYYCVDDINAVIE 301 (414)
T ss_pred --HHHhCCCCeEEEEeCCCCCCCccccCcCCeEEEeHHHHHHHHH
Confidence 23345789888888877777543221 222235555554444
No 215
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=67.31 E-value=10 Score=33.21 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=36.8
Q ss_pred cEEEeCCCChhHHHHHHHhccE-EEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 31 RVEMLGAVPHAQVRSVLISGHI-FLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~adv-~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
++.++++++++++..+|..||+ || +.|- +.+-|..+|+|.|=.
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~NfV---RGED---SfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDFNFV---RGED---SFVRAQWAGKPFVWH 288 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCccceE---ecch---HHHHHHHhCCCceEe
Confidence 5788999999999999999999 55 3444 789999999999954
No 216
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=65.91 E-value=36 Score=28.61 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=27.4
Q ss_pred hHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 41 AQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 41 ~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
.=+.++|..||.+|.+...-. -.-||.+.|+||.+-.-.
T Consensus 236 NPY~~~La~Adyii~TaDSin---M~sEAasTgkPv~~~~~~ 274 (329)
T COG3660 236 NPYIDMLAAADYIISTADSIN---MCSEAASTGKPVFILEPP 274 (329)
T ss_pred CchHHHHhhcceEEEecchhh---hhHHHhccCCCeEEEecC
Confidence 346778888888887765433 235999999999865433
No 217
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.68 E-value=15 Score=29.56 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=33.8
Q ss_pred CCCCcEEEeCCCChhHHHHHHHh-----ccE-EEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 27 SLQDRVEMLGAVPHAQVRSVLIS-----GHI-FLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 27 ~l~~~V~~~g~v~~~~~~~ll~~-----adv-~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
|+.+|..+ |.++...+.++-++ +|. |+.+...-+|.+.--==-..|+|||+||..
T Consensus 153 gi~dn~ei-gr~~P~~~y~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G~PVvsSN~A 213 (238)
T COG3473 153 GITDNLEI-GRQEPWAVYRLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTGVPVVSSNQA 213 (238)
T ss_pred CCcccchh-cccChHHHHHHHHHhcCCCCCeEEEEeeccccHHHHHHHHHHhCCceeeccHH
Confidence 44555544 66766666665544 344 666665666654332224899999999864
No 218
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=65.03 E-value=7.2 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=12.5
Q ss_pred CCCCcccCCCCCCCc
Q 027511 191 PAEDIEEVPDIVLPC 205 (222)
Q Consensus 191 p~~~~~~~~~~~~~~ 205 (222)
++.+|.+.|+|+...
T Consensus 36 ~~~~i~V~P~F~~~~ 50 (53)
T PF11167_consen 36 KKPRINVNPDFNKEV 50 (53)
T ss_pred CCCeEEEEeCCCccc
Confidence 889999999997543
No 219
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=64.82 E-value=38 Score=29.77 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=58.4
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCC--------CChhHHHHHHHhccEEE-EcCCCc-----c---ccHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGA--------VPHAQVRSVLISGHIFL-NSSLTE-----A---FCIAI 66 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~--------v~~~~~~~ll~~adv~v-~~s~~E-----~---~g~~i 66 (222)
+-++-|+|-|..-..+.+.++.+|. +|..... ....++.+++++||+++ +++.+. + ++-..
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~--~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~ 193 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGI--KTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL 193 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence 4578899999888899999888876 3444321 12245889999999976 344332 3 45688
Q ss_pred HHHHHhCCcEEEeCCCCccc
Q 027511 67 LEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 67 lEAma~G~PvVa~~~gg~~e 86 (222)
+..|.-|.-+|.+..|++.+
T Consensus 194 l~~mk~gailIN~aRG~vVD 213 (378)
T PRK15438 194 IRSLKPGAILINACRGAVVD 213 (378)
T ss_pred HhcCCCCcEEEECCCchhcC
Confidence 89999999999888776554
No 220
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=64.77 E-value=22 Score=26.55 Aligned_cols=37 Identities=24% Similarity=0.135 Sum_probs=26.0
Q ss_pred EEEcCCCccccHHHHHHHHhCCcEE-EeCCCCcccccc
Q 027511 53 FLNSSLTEAFCIAILEAASCGLLTV-STRVGGVPEVLP 89 (222)
Q Consensus 53 ~v~~s~~E~~g~~ilEAma~G~PvV-a~~~gg~~e~i~ 89 (222)
.+..++.-..+-.+-.-...|+||| |||+..+++.+.
T Consensus 56 ~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~~V~ 93 (138)
T PF04312_consen 56 DLKSSRNMSRSEVIEWISEYGKPVIVATDVSPPPETVK 93 (138)
T ss_pred EEEeecCCCHHHHHHHHHHcCCEEEEEecCCCCcHHHH
Confidence 3444445555556666678999998 899998887764
No 221
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=64.68 E-value=81 Score=26.16 Aligned_cols=79 Identities=10% Similarity=-0.026 Sum_probs=55.7
Q ss_pred CcEEEeCCCChhHHHHHHHh--ccEEEEcCCCc---cccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHHHH
Q 027511 30 DRVEMLGAVPHAQVRSVLIS--GHIFLNSSLTE---AFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMV 104 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~--adv~v~~s~~E---~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la 104 (222)
..++..|+...+.+..+++. .|++|-.++.- ..-+++-=|=-.|+|.+.-...+.... +.+....+|.++.+
T Consensus 45 ~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~---gd~~~~V~d~~ea~ 121 (257)
T COG2099 45 GPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPN---GDNWIEVADIEEAA 121 (257)
T ss_pred CCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccC---CCceEEecCHHHHH
Confidence 35788899999999999987 46677777732 222333334467999998888766544 55556677888888
Q ss_pred HHHHHHH
Q 027511 105 LAIRKAI 111 (222)
Q Consensus 105 ~~i~~ll 111 (222)
+.+.+.-
T Consensus 122 ~~~~~~~ 128 (257)
T COG2099 122 EAAKQLG 128 (257)
T ss_pred HHHhccC
Confidence 8777664
No 222
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=64.58 E-value=43 Score=29.53 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=45.5
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC------------------ChhHHHHHHHh--ccEEEEcCCCccccH
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV------------------PHAQVRSVLIS--GHIFLNSSLTEAFCI 64 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v------------------~~~~~~~ll~~--adv~v~~s~~E~~g~ 64 (222)
++++-+..+...+.+.+++++++- ..|.....- ..+.+.++.+. .|++|.......---
T Consensus 28 f~VvaLaa~~n~~~l~~q~~~f~p-~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ 106 (385)
T PRK05447 28 FRVVALSAGKNVELLAEQAREFRP-KYVVVADEEAAKELKEALAAAGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLL 106 (385)
T ss_pred cEEEEEEcCCCHHHHHHHHHHhCC-CEEEEcCHHHHHHHHHhhccCCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHH
Confidence 344333345667778888777653 223222210 12445555554 478887776544446
Q ss_pred HHHHHHHhCCcEEEeC
Q 027511 65 AILEAASCGLLTVSTR 80 (222)
Q Consensus 65 ~ilEAma~G~PvVa~~ 80 (222)
..++|+..|++|...|
T Consensus 107 ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 107 PTLAAIRAGKRIALAN 122 (385)
T ss_pred HHHHHHHCCCcEEEeC
Confidence 6889999999999866
No 223
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=63.17 E-value=54 Score=24.82 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=45.1
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHH--------------HHhccEEEEcCCCccccHHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSV--------------LISGHIFLNSSLTEAFCIAILEA 69 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~l--------------l~~adv~v~~s~~E~~g~~ilEA 69 (222)
+-+++|+|.|..-....+...+.+ .+|++...--.+++.++ +..+|+++.++..+.....+.+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i~~~ 90 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVKQA 90 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHHHHH
Confidence 457899998876655444433344 24555432212333332 45667777766665556666655
Q ss_pred HHhCCcEEEeCCCCcccc
Q 027511 70 ASCGLLTVSTRVGGVPEV 87 (222)
Q Consensus 70 ma~G~PvVa~~~gg~~e~ 87 (222)
...+.||-..+.....++
T Consensus 91 a~~~~~vn~~d~~~~~~f 108 (157)
T PRK06719 91 AHDFQWVNVVSDGTESSF 108 (157)
T ss_pred HHHCCcEEECCCCCcCcE
Confidence 555666665555444443
No 224
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=62.93 E-value=66 Score=26.16 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=42.9
Q ss_pred CCcEEEeCC-CChh---HHHHHHHhccEEEE-cCCCcccc-HHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHH
Q 027511 29 QDRVEMLGA-VPHA---QVRSVLISGHIFLN-SSLTEAFC-IAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGD 102 (222)
Q Consensus 29 ~~~V~~~g~-v~~~---~~~~ll~~adv~v~-~s~~E~~g-~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~ 102 (222)
.++|.+.|. +|.+ ...+.++.||++|. -+....+| ..+.+.+..|.|+|.-|.+.....-.+....+...+.++
T Consensus 151 rP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~ 230 (235)
T cd01408 151 KPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDD 230 (235)
T ss_pred cCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHH
Confidence 456888785 4653 33455778999764 23333333 335667778999998776644422112233345555555
Q ss_pred HH
Q 027511 103 MV 104 (222)
Q Consensus 103 la 104 (222)
+.
T Consensus 231 ~l 232 (235)
T cd01408 231 GV 232 (235)
T ss_pred HH
Confidence 44
No 225
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=62.81 E-value=63 Score=28.68 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=57.9
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC---------ChhHHHHHHHhccEEE-EcCCCc----cccHHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV---------PHAQVRSVLISGHIFL-NSSLTE----AFCIAILEA 69 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v---------~~~~~~~ll~~adv~v-~~s~~E----~~g~~ilEA 69 (222)
+-++-|+|-|.--..+.+.++.+|. +|.....- ...++.++++.||+++ +.+.++ -++-..+..
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm--~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~ 228 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGM--RVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELAL 228 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhc
Confidence 3468899999888888888888776 35443321 1236899999999965 444432 356778889
Q ss_pred HHhCCcEEEeCCCCccc
Q 027511 70 ASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 70 ma~G~PvVa~~~gg~~e 86 (222)
|--|.-+|.+..|++.+
T Consensus 229 mk~ga~lIN~aRG~~vd 245 (409)
T PRK11790 229 MKPGAILINASRGTVVD 245 (409)
T ss_pred CCCCeEEEECCCCcccC
Confidence 98898899888777654
No 226
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=62.09 E-value=61 Score=27.78 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=56.7
Q ss_pred eEEEEEcCCccHHHHHHHHH-HcCCCCcEEEeCCCC-----------hhHHHHHHHhccEEE-EcCCC-c---cccHHHH
Q 027511 5 VRFIVGGDGPKRVRLEEMRE-KHSLQDRVEMLGAVP-----------HAQVRSVLISGHIFL-NSSLT-E---AFCIAIL 67 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~-~~~l~~~V~~~g~v~-----------~~~~~~ll~~adv~v-~~s~~-E---~~g~~il 67 (222)
-++-|+|-|..-..+.+.++ .+|. +|.+..... ..++.+++++||+++ +.+.+ | -++-..+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l 223 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNM--PILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQF 223 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHH
Confidence 46789999988888888776 5665 465543221 125688999999965 34443 3 3677899
Q ss_pred HHHHhCCcEEEeCCCCccc
Q 027511 68 EAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~~e 86 (222)
+.|--|.-+|.+..|++.+
T Consensus 224 ~~mk~ga~lIN~aRG~vVd 242 (323)
T PRK15409 224 AKMKSSAIFINAGRGPVVD 242 (323)
T ss_pred hcCCCCeEEEECCCccccC
Confidence 9999999999888887653
No 227
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=61.99 E-value=35 Score=26.26 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=39.0
Q ss_pred CceEEEEEcCCcc-HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCc
Q 027511 3 VKVRFIVGGDGPK-RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTE 60 (222)
Q Consensus 3 p~~~lvi~G~g~~-~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E 60 (222)
.+-+++|+|.|.. ...+.....+.+. +|.+...- .+++...+..+|++|.+....
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~--~V~v~~r~-~~~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNA--TVTVCHSK-TKNLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCC--EEEEEECC-chhHHHHHhhCCEEEEcCCCC
Confidence 4668999999875 4435555555554 47666654 478899999999999877653
No 228
>PRK07574 formate dehydrogenase; Provisional
Probab=61.44 E-value=58 Score=28.76 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=56.1
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC-------------ChhHHHHHHHhccEEEE-cCC-Ccc---ccHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV-------------PHAQVRSVLISGHIFLN-SSL-TEA---FCIA 65 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v-------------~~~~~~~ll~~adv~v~-~s~-~E~---~g~~ 65 (222)
+-++-|+|-|..-..+.+.++.++. +|...... ...++.++++.||+++. .+. .++ ++-.
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~ 269 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDAD 269 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHH
Confidence 3468899999888888887777765 34443321 12467889999999654 333 233 5667
Q ss_pred HHHHHHhCCcEEEeCCCCccc
Q 027511 66 ILEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 66 ilEAma~G~PvVa~~~gg~~e 86 (222)
.+..|.-|.-+|.+..|++.+
T Consensus 270 ~l~~mk~ga~lIN~aRG~iVD 290 (385)
T PRK07574 270 VLSRMKRGSYLVNTARGKIVD 290 (385)
T ss_pred HHhcCCCCcEEEECCCCchhh
Confidence 899999998888887776553
No 229
>PRK12862 malic enzyme; Reviewed
Probab=61.28 E-value=62 Score=31.35 Aligned_cols=83 Identities=11% Similarity=0.189 Sum_probs=58.2
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCC-CcEEEeCC-----------CC-----------hhHHHHHHHhccEEEEcCCC
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQ-DRVEMLGA-----------VP-----------HAQVRSVLISGHIFLNSSLT 59 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~-~~V~~~g~-----------v~-----------~~~~~~ll~~adv~v~~s~~ 59 (222)
.+.++++.|.|.----+-++....|+. .++.+... ++ ...+.+.++.+|+|+-.|..
T Consensus 192 ~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~~ 271 (763)
T PRK12862 192 EDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAA 271 (763)
T ss_pred hhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcCCC
Confidence 478899999887766666666667775 35554431 11 13477888889999999987
Q ss_pred ccccHHHHHHHHhCCcEEEeCCCCccc
Q 027511 60 EAFCIAILEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 60 E~~g~~ilEAma~G~PvVa~~~gg~~e 86 (222)
..|.--+++.|+ ..|+|-.-.-..+|
T Consensus 272 g~~~~~~v~~M~-~~piifalsNP~~E 297 (763)
T PRK12862 272 GVLKPEMVKKMA-PRPLIFALANPTPE 297 (763)
T ss_pred CCCCHHHHHHhc-cCCEEEeCCCCccc
Confidence 788889999998 78888433333344
No 230
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=60.96 E-value=40 Score=27.89 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=32.0
Q ss_pred hHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCc
Q 027511 41 AQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGV 84 (222)
Q Consensus 41 ~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~ 84 (222)
+++.+++..+|+.+.++..+...-...+++..|+.|+....|.+
T Consensus 53 ~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gAl 96 (265)
T PRK13304 53 LSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGAL 96 (265)
T ss_pred CCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHHh
Confidence 34555667889988777666655566778889999998766654
No 231
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=60.94 E-value=37 Score=29.56 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=63.7
Q ss_pred EEEEEcCCccHHHHHHHHH---HcCCCCcEE---EeCCCChhHHHHHHHhccEEEEcC---CCccccHHHHHHHHhC---
Q 027511 6 RFIVGGDGPKRVRLEEMRE---KHSLQDRVE---MLGAVPHAQVRSVLISGHIFLNSS---LTEAFCIAILEAASCG--- 73 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~---~~~l~~~V~---~~g~v~~~~~~~ll~~adv~v~~s---~~E~~g~~ilEAma~G--- 73 (222)
++.|++.|..-....+.++ +.++.-.|. ++-.++.+.+....+..+.+|..- ..-++|-.+.|.++-.
T Consensus 230 dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~ 309 (356)
T PLN02683 230 DVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFD 309 (356)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchh
Confidence 4566666766665555444 345555554 344556777888888876654422 2567899999888654
Q ss_pred ---CcEEEeCCCCccccccCCce--EEeCCCHHHHHHHHHHHHhc
Q 027511 74 ---LLTVSTRVGGVPEVLPDDMV--VLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 74 ---~PvVa~~~gg~~e~i~~~~~--g~~~~~~~~la~~i~~ll~~ 113 (222)
.|+.-- |...--++.... -+..|+++.+.+++.+++..
T Consensus 310 ~~~~~v~rl--g~~d~~~p~~~~le~~~~p~~~~i~~a~~~~~~~ 352 (356)
T PLN02683 310 YLDAPVERI--AGADVPMPYAANLERLALPQVEDIVRAAKRACYR 352 (356)
T ss_pred ccCCCeEEe--ccCCcCCCccHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 355422 211111222211 24567899999999999864
No 232
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=60.12 E-value=60 Score=27.66 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=55.4
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCC-----------CChhHHHHHHHhccEEEE--cCCCcc---ccHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGA-----------VPHAQVRSVLISGHIFLN--SSLTEA---FCIAIL 67 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~-----------v~~~~~~~ll~~adv~v~--~s~~E~---~g~~il 67 (222)
+-++.|+|-|..-..+.+.++.+|. +|..... .+..++.+++..||+++. |...++ ++-..+
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~--~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l 213 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGF--PLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLL 213 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHH
Confidence 3578899999888888888887775 2433221 123568899999999765 333333 345678
Q ss_pred HHHHhCCcEEEeCCCCccc
Q 027511 68 EAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~~e 86 (222)
+.|--|.-+|-+..|++.+
T Consensus 214 ~~mk~ga~lIN~aRG~vVd 232 (312)
T PRK15469 214 EQLPDGAYLLNLARGVHVV 232 (312)
T ss_pred hcCCCCcEEEECCCccccC
Confidence 8888888888777776543
No 233
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=59.87 E-value=68 Score=26.62 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=31.4
Q ss_pred HHHHHHH--hccEEEEcCC-CccccHHHHHHHH--hCCcEEEeC
Q 027511 42 QVRSVLI--SGHIFLNSSL-TEAFCIAILEAAS--CGLLTVSTR 80 (222)
Q Consensus 42 ~~~~ll~--~adv~v~~s~-~E~~g~~ilEAma--~G~PvVa~~ 80 (222)
++.+.++ ..|+++-.|. ...|.--++++|+ |..|+|-.-
T Consensus 97 ~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaL 140 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFAL 140 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEEC
Confidence 5777778 8899998888 6778999999998 667888433
No 234
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=59.53 E-value=54 Score=28.13 Aligned_cols=107 Identities=14% Similarity=0.025 Sum_probs=64.3
Q ss_pred eEEEEEcCCccHHHHHHHHHHc---CCCCc---EEEeCCCChhHHHHHHHhccEEEEcCC---CccccHHHHHHHHhC--
Q 027511 5 VRFIVGGDGPKRVRLEEMREKH---SLQDR---VEMLGAVPHAQVRSVLISGHIFLNSSL---TEAFCIAILEAASCG-- 73 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~---~l~~~---V~~~g~v~~~~~~~ll~~adv~v~~s~---~E~~g~~ilEAma~G-- 73 (222)
-.+.|++-|.......+.++.+ ++.-. +.++-.++.+.+...++.++.+|..-. .-++|-.+.|.++..
T Consensus 202 ~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~ 281 (327)
T PRK09212 202 SDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAF 281 (327)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCc
Confidence 3567777777776666555543 44433 445666777889999999877654322 456688888888754
Q ss_pred ----CcEEEeCCCCccccccCCce--EEeCCCHHHHHHHHHHHHhc
Q 027511 74 ----LLTVSTRVGGVPEVLPDDMV--VLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 74 ----~PvVa~~~gg~~e~i~~~~~--g~~~~~~~~la~~i~~ll~~ 113 (222)
.|+. ..++.....+-+.. .+--|+.+.+++++.++++.
T Consensus 282 ~~~~~~i~--r~~~~~~~~~~~~~le~~~l~~~~~I~~~i~~~~~~ 325 (327)
T PRK09212 282 DYLDAPVE--RVTGKDVPLPYAANLEKLALPSEEDIIEAVKKVCYR 325 (327)
T ss_pred cccCCCeE--EEcCCCccCCchHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 2333 22333333322211 12335788888888887743
No 235
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=59.43 E-value=43 Score=28.26 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=48.7
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCC---------------hhHHHHHHHhccEEEEcCCCccccHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVP---------------HAQVRSVLISGHIFLNSSLTEAFCIAILE 68 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~---------------~~~~~~ll~~adv~v~~s~~E~~g~~ilE 68 (222)
+-++.|+|.|..-..+...++.+|. +|.....-+ .+++.+.++.+|+.+++.-.....-..++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~ 229 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGA--NVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLS 229 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHH
Confidence 5688999988877777777777764 455443321 23567788899999987532222223344
Q ss_pred HHHhCCcEE--EeCCCCc
Q 027511 69 AASCGLLTV--STRVGGV 84 (222)
Q Consensus 69 Ama~G~PvV--a~~~gg~ 84 (222)
.|.-|.-+| +++-|+.
T Consensus 230 ~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 230 KMPPEALIIDLASKPGGT 247 (296)
T ss_pred cCCCCcEEEEEccCCCCc
Confidence 455565555 5555553
No 236
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=58.95 E-value=12 Score=23.96 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=42.8
Q ss_pred CCceEEEEEc-CCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 2 RVKVRFIVGG-DGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 2 ~p~~~lvi~G-~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+.++.|.+.| +...++.++++++++|- .+ ...++ ...+.+|.... .........|.+.|+|+|..+
T Consensus 6 F~g~~f~i~~~~~~~~~~l~~~i~~~GG--~v--~~~~~--------~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~~ 72 (78)
T PF00533_consen 6 FEGCTFCISGFDSDEREELEQLIKKHGG--TV--SNSFS--------KKTTHVIVGNP-NKRTKKYKAAIANGIPIVSPD 72 (78)
T ss_dssp TTTEEEEESSTSSSHHHHHHHHHHHTTE--EE--ESSSS--------TTSSEEEESSS-HCCCHHHHHHHHTTSEEEETH
T ss_pred CCCEEEEEccCCCCCHHHHHHHHHHcCC--EE--Eeecc--------cCcEEEEeCCC-CCccHHHHHHHHCCCeEecHH
Confidence 3577888844 55677899999998873 23 22221 13445553333 345667899999999999754
No 237
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=58.73 E-value=6.6 Score=27.94 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=33.4
Q ss_pred HHHHHHH--hccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcc
Q 027511 42 QVRSVLI--SGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVP 85 (222)
Q Consensus 42 ~~~~ll~--~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~ 85 (222)
++.+++. ..|++|=++..+...--+.+++..|+.||+.+.+.+.
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHHHH
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHHhh
Confidence 4556666 7999998877777777788999999999999988665
No 238
>PRK08328 hypothetical protein; Provisional
Probab=58.26 E-value=64 Score=26.11 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=36.7
Q ss_pred eCCCChhHHHHHHHhccEEEEcCCCccccHHHHH--HHHhCCcEEEeCCCCcccc
Q 027511 35 LGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE--AASCGLLTVSTRVGGVPEV 87 (222)
Q Consensus 35 ~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE--Ama~G~PvVa~~~gg~~e~ 87 (222)
.+.++.+...+++..+|+++.+...-. ....+. +...|+|+|.....|....
T Consensus 104 ~~~~~~~~~~~~l~~~D~Vid~~d~~~-~r~~l~~~~~~~~ip~i~g~~~g~~G~ 157 (231)
T PRK08328 104 VGRLSEENIDEVLKGVDVIVDCLDNFE-TRYLLDDYAHKKGIPLVHGAVEGTYGQ 157 (231)
T ss_pred eccCCHHHHHHHHhcCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEeeccCEEE
Confidence 455666778889999999998876532 233444 6789999998776655443
No 239
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=57.35 E-value=63 Score=28.47 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=56.5
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCC--------CChhHHHHHHHhccEEE-EcCCCc-----c---ccHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGA--------VPHAQVRSVLISGHIFL-NSSLTE-----A---FCIAI 66 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~--------v~~~~~~~ll~~adv~v-~~s~~E-----~---~g~~i 66 (222)
+-++-|+|-|..-..+.+.++.+|. +|..... ....++.+++++||+++ +.+.+. + ++-..
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~--~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~ 193 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGW--KVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAF 193 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHH
Confidence 4568899999888888888888876 3444331 22346788999999865 444432 2 45678
Q ss_pred HHHHHhCCcEEEeCCCCccc
Q 027511 67 LEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 67 lEAma~G~PvVa~~~gg~~e 86 (222)
+..|.-|.-+|.+..|++.+
T Consensus 194 l~~mk~gailIN~aRG~vVd 213 (381)
T PRK00257 194 LASLRPGAWLINASRGAVVD 213 (381)
T ss_pred HhcCCCCeEEEECCCCcccC
Confidence 88888888888777776544
No 240
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=57.14 E-value=78 Score=27.99 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=47.5
Q ss_pred CceEEEEEcCCccHHHHHHHHHHc---CCCC---cEEEeCCCChhHHHHHHHhccEEEEcCCCcc---ccHHHHHHHHh
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKH---SLQD---RVEMLGAVPHAQVRSVLISGHIFLNSSLTEA---FCIAILEAASC 72 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~---~l~~---~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~---~g~~ilEAma~ 72 (222)
+|..++|++-|.....+++.++.+ |..- ++..+-.+|.+++.+++.+++.++..-.... +|.-+.|-.++
T Consensus 258 edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l~~ev~~~ 336 (390)
T PRK08366 258 DDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGILFTEAKGA 336 (390)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHHHHHHHHH
Confidence 567788888887777777766665 3211 3555667788999999999998776665443 44455555444
No 241
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=56.92 E-value=17 Score=25.35 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=45.8
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCCh----------hHHHHHHHhccEEEEcCCCccccHHHHHH-HH
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPH----------AQVRSVLISGHIFLNSSLTEAFCIAILEA-AS 71 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~----------~~~~~ll~~adv~v~~s~~E~~g~~ilEA-ma 71 (222)
.+-+++++|+|+.-..--+..-+.+ .+|+.+..-.. .++...+..+++.+.+...+...-.+.+. -+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~~a~~ 83 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG--AKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPELNEAIYADARA 83 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHHHHHHHHHHHhh
Confidence 3557888888865433333222222 45555444210 22334466777777666555555555444 45
Q ss_pred hCCcEEEeCCCCccccc
Q 027511 72 CGLLTVSTRVGGVPEVL 88 (222)
Q Consensus 72 ~G~PvVa~~~gg~~e~i 88 (222)
.|+||-..+.+...+++
T Consensus 84 ~~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 84 RGILVNVVDDPELCDFI 100 (103)
T ss_dssp TTSEEEETT-CCCCSEE
T ss_pred CCEEEEECCCcCCCeEE
Confidence 89999999988776654
No 242
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=56.83 E-value=18 Score=30.77 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
+.+++++++.|...-+...|.++.+.+..+ ..|+||+++-.+. ++...-.+-+|||++
T Consensus 232 ~~l~~ll~~~gkk~y~i~~~~in~~kL~nf--~iD~fV~~aCPr~---sidd~~~f~kPvlTP 289 (308)
T TIGR03682 232 EELKKLLEELGKEALLILLDNISPDQLRNL--DFDAYVNTACPRI---AIDDYARFKKPVLTP 289 (308)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHhcC--CcCEEEEccCCCc---ccccHhhCCCcccCH
Confidence 677778888888777778999998888766 5999998776432 344455555666654
No 243
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=55.76 E-value=31 Score=30.31 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=11.5
Q ss_pred CccccHHHHHHHHhCCcEEEe
Q 027511 59 TEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 59 ~E~~g~~ilEAma~G~PvVa~ 79 (222)
+|+.| +++-++.+|.|.|..
T Consensus 354 ~~~~g-~~~~yl~ag~p~vvg 373 (383)
T PF03568_consen 354 FEPYG-TPLSYLLAGCPLVVG 373 (383)
T ss_pred CCCCC-cHHHHHhcCChheEe
Confidence 34444 445677777776643
No 244
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=54.88 E-value=20 Score=31.37 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=37.1
Q ss_pred cEEEeCCCChhHHHHHHHhccE-EEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 31 RVEMLGAVPHAQVRSVLISGHI-FLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~adv-~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
.+.++++++++++..+|-+||+ || +.|- +.+-|..+|+|.|=.-
T Consensus 243 ~~~~LPf~~Q~~yD~LLW~cD~NfV---RGED---SFVRAqWAgkPfvWhI 287 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLLWACDLNFV---RGED---SFVRAQWAGKPFVWHI 287 (371)
T ss_pred EEEEcCCCChhhHHHHHHhChhcEe---echh---HHHHHHHcCCCceeec
Confidence 5788999999999999999999 55 3444 7899999999999543
No 245
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=53.65 E-value=1.1e+02 Score=24.24 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=44.8
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHH-----------------HHHhccEEEEcCCCc-cccHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRS-----------------VLISGHIFLNSSLTE-AFCIA 65 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~-----------------ll~~adv~v~~s~~E-~~g~~ 65 (222)
+-+++|+|.|..-..-.+..-+.| .+|+....-..+++.. .+..+++++.++-.. ..--.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i 86 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRV 86 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHH
Confidence 346888888865433233322333 2344443322333332 345566655444433 33334
Q ss_pred HHHHHHhCCcEEEeCCCCccccccC
Q 027511 66 ILEAASCGLLTVSTRVGGVPEVLPD 90 (222)
Q Consensus 66 ilEAma~G~PvVa~~~gg~~e~i~~ 90 (222)
.-+|-..|+||-..+.....+++-+
T Consensus 87 ~~~a~~~~ilvn~~d~~e~~~f~~p 111 (205)
T TIGR01470 87 AHAARARGVPVNVVDDPELCSFIFP 111 (205)
T ss_pred HHHHHHcCCEEEECCCcccCeEEEe
Confidence 4566688999987777665555443
No 246
>PRK13243 glyoxylate reductase; Reviewed
Probab=53.28 E-value=61 Score=27.84 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=56.3
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCC-----------hhHHHHHHHhccEEEE-cCCC----ccccHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVP-----------HAQVRSVLISGHIFLN-SSLT----EAFCIAIL 67 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~-----------~~~~~~ll~~adv~v~-~s~~----E~~g~~il 67 (222)
+-++.|+|-|..-..+.+.+...|. +|.....-+ ..++.+++.+||+++. .+.+ .-++-..+
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~ 227 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGM--RILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERL 227 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHH
Confidence 3478899999888888888887775 355443221 1357888999999654 3332 23556788
Q ss_pred HHHHhCCcEEEeCCCCccc
Q 027511 68 EAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~~e 86 (222)
++|--|.-+|-+..|++.+
T Consensus 228 ~~mk~ga~lIN~aRg~~vd 246 (333)
T PRK13243 228 KLMKPTAILVNTARGKVVD 246 (333)
T ss_pred hcCCCCeEEEECcCchhcC
Confidence 8998898888777776553
No 247
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=52.83 E-value=58 Score=25.74 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=39.4
Q ss_pred CCceEEEEEcCCccH-HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcE
Q 027511 2 RVKVRFIVGGDGPKR-VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLT 76 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~-~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~Pv 76 (222)
.|.+-|++.|.|.-+ .++++++++|+. +.+.. .+-+++-.+++ ...+|-.+-++|..|.+|
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~f----tHlSa--GdLLR~E~~~~--------gse~g~~I~~~i~~G~iV 68 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGF----THLSA--GDLLRAEIASA--------GSERGALIKEIIKNGDLV 68 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCc----eeecH--HHHHHHHHccc--------cChHHHHHHHHHHcCCcC
Confidence 478889999987655 789999999873 22222 23344444433 334677777777777665
No 248
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=52.83 E-value=31 Score=26.46 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=26.7
Q ss_pred HHHHHHh-ccEEEEcCC------CccccHHHHHHHHhCCcEEEeCC
Q 027511 43 VRSVLIS-GHIFLNSSL------TEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 43 ~~~ll~~-adv~v~~s~------~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+..-+.. +|++|.-=. ..+|.-.+.+|++.|+||++.-.
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~ 131 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVP 131 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEEC
Confidence 3444444 788776433 34566788999999999997543
No 249
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=52.80 E-value=1.1e+02 Score=26.41 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=45.6
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhH----HHHHHH-----hcc--EEEEcCCCccccHHHHHHH
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQ----VRSVLI-----SGH--IFLNSSLTEAFCIAILEAA 70 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~----~~~ll~-----~ad--v~v~~s~~E~~g~~ilEAm 70 (222)
.|+.-++|.|.-.-...++...+.+|.. |.-.|.-++.| +...++ ..+ -.+..+-++--+ +++|+|
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~Git--V~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~-~~~e~~ 151 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGIT--VKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYAD-ALMELM 151 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcE--EEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccccHH-HHHHHH
Confidence 5777788888766778888888888874 44444433322 333332 222 223333333323 999999
Q ss_pred HhC-CcEEEeCC
Q 027511 71 SCG-LLTVSTRV 81 (222)
Q Consensus 71 a~G-~PvVa~~~ 81 (222)
--| +||+.++.
T Consensus 152 k~~~~p~~~~n~ 163 (337)
T COG2247 152 KEGIVPVILKNT 163 (337)
T ss_pred hcCcceeEeccc
Confidence 999 45655554
No 250
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=52.74 E-value=19 Score=31.24 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCC------ChhHHHHHHHhccEEEEcCC---CccccHHHHHHHHhCCcEEEeC--CCCc
Q 027511 16 RVRLEEMREKHSLQDRVEMLGAV------PHAQVRSVLISGHIFLNSSL---TEAFCIAILEAASCGLLTVSTR--VGGV 84 (222)
Q Consensus 16 ~~~l~~~~~~~~l~~~V~~~g~v------~~~~~~~ll~~adv~v~~s~---~E~~g~~ilEAma~G~PvVa~~--~gg~ 84 (222)
|..+-+...++ + .|...|.- +.+....+++....++.--. .+-.-=++..|+..|+.+|.-. ....
T Consensus 191 R~~~~~~L~~~-~--~vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~ 267 (349)
T PF00852_consen 191 REEYVRELSKY-I--PVDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNY 267 (349)
T ss_dssp HHHHHHHHHTT-S---EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTH
T ss_pred HHHHHHHHHhh-c--CeEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEeccc
Confidence 44444444444 3 47777765 34457788888887664322 2333457889999997766555 5677
Q ss_pred cccccCCceEEeCC--CHHHHHHHHHHHHhcCC
Q 027511 85 PEVLPDDMVVLAEP--DPGDMVLAIRKAISLLP 115 (222)
Q Consensus 85 ~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~~ 115 (222)
.++++++....+.+ ++++|++-|..+-+++.
T Consensus 268 ~~~~P~~SfI~~~df~s~~~La~yl~~l~~n~~ 300 (349)
T PF00852_consen 268 EEFAPPNSFIHVDDFKSPKELADYLKYLDKNDE 300 (349)
T ss_dssp HHHS-GGGSEEGGGSSSHHHHHHHHHHHHT-HH
T ss_pred ccCCCCCCccchhcCCCHHHHHHHHHHHhcCHH
Confidence 78888876655443 89999999999988744
No 251
>PLN02306 hydroxypyruvate reductase
Probab=52.58 E-value=1.4e+02 Score=26.27 Aligned_cols=81 Identities=14% Similarity=0.060 Sum_probs=55.4
Q ss_pred ceEEEEEcCCccHHHHHHHHH-HcCCCCcEEEeCCCC---------------------------hhHHHHHHHhccEEEE
Q 027511 4 KVRFIVGGDGPKRVRLEEMRE-KHSLQDRVEMLGAVP---------------------------HAQVRSVLISGHIFLN 55 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~-~~~l~~~V~~~g~v~---------------------------~~~~~~ll~~adv~v~ 55 (222)
+-++-|+|-|.--..+.+++. .+|. +|....... ..++.+++++||+++.
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~l 242 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISL 242 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEE
Confidence 346789998887777777653 5554 455433211 1368999999999764
Q ss_pred -cCCC-cc---ccHHHHHHHHhCCcEEEeCCCCccc
Q 027511 56 -SSLT-EA---FCIAILEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 56 -~s~~-E~---~g~~ilEAma~G~PvVa~~~gg~~e 86 (222)
++.+ |+ ++-..++.|--|.-+|-+..|++.+
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVD 278 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVID 278 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 4443 33 5678899999999999888887654
No 252
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=52.26 E-value=70 Score=22.54 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=42.5
Q ss_pred EEEEcCCccH----HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHH--hccEEEEcCCCccccHHHHH-HHHhCCcEEEe
Q 027511 7 FIVGGDGPKR----VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLI--SGHIFLNSSLTEAFCIAILE-AASCGLLTVST 79 (222)
Q Consensus 7 lvi~G~g~~~----~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~--~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~ 79 (222)
++++|.|-.. ..+++.+++.|++-.|.-.+ -.++..... .+|+++.++.....=-.+-+ +...|+||..-
T Consensus 5 LlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~---~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I 81 (104)
T PRK09590 5 LIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAIT---ATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQI 81 (104)
T ss_pred EEECCCchHHHHHHHHHHHHHHHCCCceEEEEec---HHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEe
Confidence 5666776544 56677778888864443333 366766654 58999887763322222222 22478899875
Q ss_pred C
Q 027511 80 R 80 (222)
Q Consensus 80 ~ 80 (222)
+
T Consensus 82 ~ 82 (104)
T PRK09590 82 P 82 (104)
T ss_pred C
Confidence 4
No 253
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=51.84 E-value=75 Score=26.41 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=31.7
Q ss_pred hHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 41 AQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 41 ~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
.++.+++...|+++.++-.....-...+++..|++|++...+
T Consensus 59 ~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 59 VPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred CCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecch
Confidence 446667788999887776666666668889999999976544
No 254
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=50.93 E-value=13 Score=23.32 Aligned_cols=16 Identities=31% Similarity=0.210 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCcEEEe
Q 027511 64 IAILEAASCGLLTVST 79 (222)
Q Consensus 64 ~~ilEAma~G~PvVa~ 79 (222)
-.|.|++..|+||+|-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4789999999999973
No 255
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=50.40 E-value=1e+02 Score=23.14 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhc-----cEEEEcCCCccccHHHHHHH-HhCCcEE---EeCCCCcccc
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISG-----HIFLNSSLTEAFCIAILEAA-SCGLLTV---STRVGGVPEV 87 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~a-----dv~v~~s~~E~~g~~ilEAm-a~G~PvV---a~~~gg~~e~ 87 (222)
+.+++.+++++. .+.|.-+-...++-+.+..| ++.++|.-+.+.++++-.|+ +..+|+| -||+-.=.++
T Consensus 32 ~~~~~~a~~~g~--~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vEVHlSNihaRE~F 109 (146)
T COG0757 32 ADLEEEAAKLGV--EVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVEVHLSNIHAREEF 109 (146)
T ss_pred HHHHHHHHHcCc--eEEEEecCchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEEEEecCchhcccc
Confidence 445555666665 37777766566777776554 28999999999999999997 4579999 3444322222
Q ss_pred -----ccCCceEEeCC-CHHHHHHHHHHHHh
Q 027511 88 -----LPDDMVVLAEP-DPGDMVLAIRKAIS 112 (222)
Q Consensus 88 -----i~~~~~g~~~~-~~~~la~~i~~ll~ 112 (222)
+.+-..|..+. .+....=++..+++
T Consensus 110 RhhS~~s~~a~GvI~GlG~~GY~lAl~~l~~ 140 (146)
T COG0757 110 RHHSYTSPVAKGVICGLGAQGYLLALRALVN 140 (146)
T ss_pred cccccccchhceeEecCcHHHHHHHHHHHHH
Confidence 22223444444 55555555555554
No 256
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=50.20 E-value=66 Score=30.11 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=69.4
Q ss_pred EEEEEcCCccHHHHHHHHHHc---CCCCc---EEEeCCCChhHHHHHHHhccEEEEcCC---CccccHHHHHHHHhCCc-
Q 027511 6 RFIVGGDGPKRVRLEEMREKH---SLQDR---VEMLGAVPHAQVRSVLISGHIFLNSSL---TEAFCIAILEAASCGLL- 75 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~~~---~l~~~---V~~~g~v~~~~~~~ll~~adv~v~~s~---~E~~g~~ilEAma~G~P- 75 (222)
++.|++-|.......+.++++ |+... -+|.-.++.+-+..+.+..+++|--.. ..+||..++|+++.--.
T Consensus 503 ~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~ 582 (627)
T COG1154 503 KVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGIL 582 (627)
T ss_pred cEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCC
Confidence 456666666665555555544 44433 457788887778999999999876443 67899999999865433
Q ss_pred EEEeCCCCccccccCCceE--EeC-C-CHHHHHHHHHHHHhc
Q 027511 76 TVSTRVGGVPEVLPDDMVV--LAE-P-DPGDMVLAIRKAISL 113 (222)
Q Consensus 76 vVa~~~gg~~e~i~~~~~g--~~~-~-~~~~la~~i~~ll~~ 113 (222)
+=.-+.|-..++++++..- +.. . |.+.+++.|..++..
T Consensus 583 ~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~~ 624 (627)
T COG1154 583 VPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLKA 624 (627)
T ss_pred CceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 2233456556666665321 111 1 678888888877754
No 257
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=50.08 E-value=92 Score=26.73 Aligned_cols=106 Identities=9% Similarity=0.034 Sum_probs=59.9
Q ss_pred EEEEEcCCccHHHHHHHHH---HcCCCCcEEEeCC---CChhHHHHHHHhccEEEEc---CCCccccHHHHHHHHhC---
Q 027511 6 RFIVGGDGPKRVRLEEMRE---KHSLQDRVEMLGA---VPHAQVRSVLISGHIFLNS---SLTEAFCIAILEAASCG--- 73 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~---~~~l~~~V~~~g~---v~~~~~~~ll~~adv~v~~---s~~E~~g~~ilEAma~G--- 73 (222)
.+.|++.|..-....+.++ +.|+.-.|.-+.+ ++.+.+....+..+.+|.. ...-++|-.+.|.++-.
T Consensus 203 ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~ 282 (327)
T CHL00144 203 DITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFD 282 (327)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchh
Confidence 4666666666655555444 3466555554444 4555566777666544432 22567888888887544
Q ss_pred ---CcEEEeCCCCccccccCCce--EEeCCCHHHHHHHHHHHHhc
Q 027511 74 ---LLTVSTRVGGVPEVLPDDMV--VLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 74 ---~PvVa~~~gg~~e~i~~~~~--g~~~~~~~~la~~i~~ll~~ 113 (222)
.|+.. .|.....++.... .+.-.|.+.+++++.+++++
T Consensus 283 ~~~~pv~r--l~~~d~~~~~~~~~~~~~gl~~~~I~~~i~~~l~~ 325 (327)
T CHL00144 283 ELDAPIVR--LSSQDVPTPYNGPLEEATVIQPAQIIEAVEQIITN 325 (327)
T ss_pred hcCCCeEE--EccCCCcCCCCccHHHHhCCCHHHHHHHHHHHHhc
Confidence 35542 2222222221111 12355889999999988865
No 258
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=49.78 E-value=1.6e+02 Score=24.80 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=40.7
Q ss_pred hhHHHHHHHh-cc-EEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcccccc-----CCceEEeCCC
Q 027511 40 HAQVRSVLIS-GH-IFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLP-----DDMVVLAEPD 99 (222)
Q Consensus 40 ~~~~~~ll~~-ad-v~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~-----~~~~g~~~~~ 99 (222)
..++..++.. +| ++|-=|..+..--.+--+...|+|+|.--.|...+-+. .....+..||
T Consensus 58 ~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apN 124 (275)
T TIGR02130 58 EARIGEVFAKYPELICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVADAKHPAVIAPN 124 (275)
T ss_pred cccHHHHHhhcCCEEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECc
Confidence 3556667766 88 88877776665556777889999999888887666441 2233456664
No 259
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=49.44 E-value=30 Score=31.61 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+.+++++++.|...-+...|.++.+.+..+ ...|+||..+-.+. ++...-.+-+|||++-
T Consensus 301 ~~l~~li~~~GkK~yl~~vgkinpaKLaNF-~eID~fV~vaCPr~---sidd~~~F~KPVlTP~ 360 (496)
T TIGR00272 301 NELRKMIKTAGKKHYLFVVGKPNPAKLANF-EDIDIFVLLGCSQS---GIIDSNEFYRPIVTPF 360 (496)
T ss_pred HHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCCCEEEEccCCCc---ccccHhhCCCceecHH
Confidence 678888899998877888999988777554 46999998776443 3445556666776543
No 260
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=48.70 E-value=49 Score=24.78 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhc----c-EEEEcCCCccccHHHHHHH-HhCCcEEE---eCCCCcc--
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISG----H-IFLNSSLTEAFCIAILEAA-SCGLLTVS---TRVGGVP-- 85 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~a----d-v~v~~s~~E~~g~~ilEAm-a~G~PvVa---~~~gg~~-- 85 (222)
+.+++.++++++ .|.|.-+=...++-+.+.++ | +.++|.-+.+.+.++.+|+ +.++|+|= +|.-.-.
T Consensus 32 ~~~~~~a~~~g~--~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEVHiSNi~~RE~f 109 (140)
T PF01220_consen 32 QKCKETAAELGV--EVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEVHISNIHAREEF 109 (140)
T ss_dssp HHHHHHHHHTTE--EEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEEESS-GGGS-GG
T ss_pred HHHHHHHHHCCC--eEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEEEcCCccccccc
Confidence 455566666665 37777766677777777765 3 3678999999999999998 46899993 3332221
Q ss_pred ---ccccCCceEEeCC-CHHHHHHHHHHHH
Q 027511 86 ---EVLPDDMVVLAEP-DPGDMVLAIRKAI 111 (222)
Q Consensus 86 ---e~i~~~~~g~~~~-~~~~la~~i~~ll 111 (222)
.++.+...|.... -.+...-+|+.++
T Consensus 110 R~~S~~s~~~~g~I~G~G~~gY~lAl~al~ 139 (140)
T PF01220_consen 110 RHHSVISPVAVGVISGFGADGYLLALEALV 139 (140)
T ss_dssp GG--SSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccccEEEEEeCCHHHHHHHHHHHh
Confidence 1333334455544 4555555555543
No 261
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=48.69 E-value=1.2e+02 Score=29.44 Aligned_cols=76 Identities=9% Similarity=0.188 Sum_probs=54.6
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCC-CcEEEeCC-----------C-----------ChhHHHHHHHhccEEEEcCCC
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQ-DRVEMLGA-----------V-----------PHAQVRSVLISGHIFLNSSLT 59 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~-~~V~~~g~-----------v-----------~~~~~~~ll~~adv~v~~s~~ 59 (222)
.+.++++.|.|..---+-++....|+. .++.+... + +...+.+.++.+|+|+-.|..
T Consensus 184 ~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~~ 263 (752)
T PRK07232 184 EDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSAA 263 (752)
T ss_pred hhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCCC
Confidence 578999999887766666666667774 34543221 1 113578888899999999987
Q ss_pred ccccHHHHHHHHhCCcEEEe
Q 027511 60 EAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 60 E~~g~~ilEAma~G~PvVa~ 79 (222)
..|.--+++.|+ ..|+|-.
T Consensus 264 g~~~~~~v~~M~-~~piifa 282 (752)
T PRK07232 264 GVLTPEMVKSMA-DNPIIFA 282 (752)
T ss_pred CCCCHHHHHHhc-cCCEEEe
Confidence 778889999997 4788843
No 262
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=48.48 E-value=8.7 Score=23.69 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=19.0
Q ss_pred HHHHHHhCCcEEEeCCCCccccccCCceEEeCC--CHHHHHHHHH
Q 027511 66 ILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP--DPGDMVLAIR 108 (222)
Q Consensus 66 ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~--~~~~la~~i~ 108 (222)
.-=|...|+|+++..-....+-|....+.|..+ +++++.++|.
T Consensus 8 ~~~A~~~~lp~~~gSDAH~~~~vG~~~t~~~~~~~s~~~l~~alr 52 (56)
T PF13263_consen 8 AELAEKYGLPFTGGSDAHFLEEVGRGYTEFEGPIRSPEELLEALR 52 (56)
T ss_dssp HHHHHHTT--EEEE--BSSGGGTTTTHHHH---------------
T ss_pred HHHHHHcCCCeEeEEcccChhhcCCEeeecccccccccccccccc
Confidence 334668899999877777778787776655333 5677777765
No 263
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=47.98 E-value=47 Score=22.96 Aligned_cols=49 Identities=16% Similarity=0.313 Sum_probs=31.5
Q ss_pred EEEEcCCc-----cHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC
Q 027511 7 FIVGGDGP-----KRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL 58 (222)
Q Consensus 7 lvi~G~g~-----~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~ 58 (222)
+..+|.|- .+..+++.+++++++..+.-.- -++.......+|+++....
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~---v~~~~~~~~~aDiiv~s~~ 58 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCA---VDEIKALTDGADIIVTSTK 58 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEE---ecccccCCCcccEEEEehH
Confidence 34556653 2367888888888864333222 2566777788899986655
No 264
>PRK12861 malic enzyme; Reviewed
Probab=47.80 E-value=98 Score=30.02 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=54.0
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCC-CcEEEeC--------C---CC-----------hhHHHHHHHhccEEEEcCCC
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQ-DRVEMLG--------A---VP-----------HAQVRSVLISGHIFLNSSLT 59 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~-~~V~~~g--------~---v~-----------~~~~~~ll~~adv~v~~s~~ 59 (222)
.+.++++.|.|.----+-++....|+. +++.+.. . ++ ...+.+.+..+|+|+-.|..
T Consensus 188 ~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~S~~ 267 (764)
T PRK12861 188 KEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGLSAG 267 (764)
T ss_pred hHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCCC
Confidence 478899999887666666666667774 2554433 1 11 13577888889999999987
Q ss_pred ccccHHHHHHHHhCCcEEEe
Q 027511 60 EAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 60 E~~g~~ilEAma~G~PvVa~ 79 (222)
..|.--++++|+- .|+|-.
T Consensus 268 g~ft~e~v~~Ma~-~PIIFa 286 (764)
T PRK12861 268 GVLKAEMLKAMAA-RPLILA 286 (764)
T ss_pred CCCCHHHHHHhcc-CCEEEE
Confidence 7788888999976 788843
No 265
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=46.97 E-value=1.8e+02 Score=24.63 Aligned_cols=105 Identities=9% Similarity=0.093 Sum_probs=53.9
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC----------------ChhHHHHHHHhccEEEEcCCCccccHHH
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV----------------PHAQVRSVLISGHIFLNSSLTEAFCIAI 66 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v----------------~~~~~~~ll~~adv~v~~s~~E~~g~~i 66 (222)
++.++.++|.|+.-..+-+.....+. .+|.+.+.- +.+++.+.+..+|+++.++........+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~ 255 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIV 255 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHH
Confidence 46678888887666544444443332 223333221 2245666778899998877765542222
Q ss_pred HHHHH--hCCcEEEeCCCCccccccCCce--EEeCCCHHHHHHHHH
Q 027511 67 LEAAS--CGLLTVSTRVGGVPEVLPDDMV--VLAEPDPGDMVLAIR 108 (222)
Q Consensus 67 lEAma--~G~PvVa~~~gg~~e~i~~~~~--g~~~~~~~~la~~i~ 108 (222)
-.++. .|.|.+.-|.+-++++-++-.. +...-|.++|.+...
T Consensus 256 ~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~ 301 (311)
T cd05213 256 ERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVE 301 (311)
T ss_pred HHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHH
Confidence 22222 2456676677755554322111 122235556555444
No 266
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=46.78 E-value=2.1e+02 Score=25.41 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=51.6
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCC----------------CChhHHHHHHHhccEEEEcCC-Ccc-ccH
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGA----------------VPHAQVRSVLISGHIFLNSSL-TEA-FCI 64 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~----------------v~~~~~~~ll~~adv~v~~s~-~E~-~g~ 64 (222)
++-++.|+|.|..-..+-......|.. +|...+. ++.+++...+..+|+++.++. .++ +.-
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~-~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~~ 257 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVG-KILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVSK 257 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEcH
Confidence 456788889887766555555555532 2433322 223456677888999887654 232 333
Q ss_pred HHHHHHHhC--CcEEEeCCCCcccccc
Q 027511 65 AILEAASCG--LLTVSTRVGGVPEVLP 89 (222)
Q Consensus 65 ~ilEAma~G--~PvVa~~~gg~~e~i~ 89 (222)
..++.+..+ .|.+.-|.+.++++-+
T Consensus 258 e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 258 EDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred HHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 445555443 5777778877666654
No 267
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=46.68 E-value=48 Score=20.55 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=40.2
Q ss_pred CCceEEEEEc--CCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 2 RVKVRFIVGG--DGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 2 ~p~~~lvi~G--~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
+.++.+.+.| .+..++.+.+++..+|-. +.. .++.. ++..+|.... +........+...|+|+|..
T Consensus 3 f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~--~~~--~~~~~-------~~thvi~~~~-~~~~~~~~~~~~~~~~iV~~ 70 (80)
T smart00292 3 FKGKVFVITGKFDKNERDELKELIEALGGK--VTS--SLSSK-------TTTHVIVGSP-EGGKLELLLAIALGIPIVTE 70 (80)
T ss_pred cCCeEEEEeCCCCCccHHHHHHHHHHcCCE--Eec--ccCcc-------ceeEEEEcCC-CCccHHHHHHHHcCCCCccH
Confidence 3578889998 557778999999988742 322 21111 2344444332 22222267888899999865
Q ss_pred C
Q 027511 80 R 80 (222)
Q Consensus 80 ~ 80 (222)
.
T Consensus 71 ~ 71 (80)
T smart00292 71 D 71 (80)
T ss_pred H
Confidence 4
No 268
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=46.60 E-value=1.6e+02 Score=26.20 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=51.0
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC----------------ChhHHHHHHHhccEEEEcCCC-cc-ccH
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV----------------PHAQVRSVLISGHIFLNSSLT-EA-FCI 64 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v----------------~~~~~~~ll~~adv~v~~s~~-E~-~g~ 64 (222)
++-++.|+|.|..-..+.......|.. +|.+.+.- +.++..+.+..+|+++.++.. +. +.-
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~-~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~~ 259 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVR-KITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIGK 259 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCC-eEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEcH
Confidence 456788889887766665555555542 34333221 224455667888999886553 22 233
Q ss_pred HHHHHHHh---CCcEEEeCCCCcccccc
Q 027511 65 AILEAASC---GLLTVSTRVGGVPEVLP 89 (222)
Q Consensus 65 ~ilEAma~---G~PvVa~~~gg~~e~i~ 89 (222)
..++.+.. +.|.+.-|.+.++++-+
T Consensus 260 ~~l~~~~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 260 GMVERALKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred HHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence 34454432 46788888887777654
No 269
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=46.57 E-value=1.9e+02 Score=25.61 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=59.5
Q ss_pred CceEEEEEcCCccHHHHHHHHHH---cCCCC---cEEEeCCCChhHHHHHHHhccEEEEcCCCccc---cHHH---HHHH
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREK---HSLQD---RVEMLGAVPHAQVRSVLISGHIFLNSSLTEAF---CIAI---LEAA 70 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~---~~l~~---~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~---g~~i---lEAm 70 (222)
+|..++|++-|.....+++.++. .|..- ++..+-.+|.+++..++.+++-++..-..-.+ |.-. .-|+
T Consensus 260 eDAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal 339 (394)
T PRK08367 260 EDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAAL 339 (394)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHH
Confidence 57788888888777666666554 23321 45556677889999999999887765543221 2222 2222
Q ss_pred H-hC-CcEEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHh
Q 027511 71 S-CG-LLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAIS 112 (222)
Q Consensus 71 a-~G-~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~ 112 (222)
. .+ .|.|..-.+|+. =...+++++.+.+.++++
T Consensus 340 ~~~~~~~~v~~~~~glg---------g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK08367 340 VNESEKPKILDFIIGLG---------GRDVTFKQLDEALEIAEK 374 (394)
T ss_pred hccCCCCeEEEEEeCCC---------CCCCCHHHHHHHHHHHHH
Confidence 1 12 344444444431 122367888888887665
No 270
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=46.53 E-value=41 Score=25.75 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=28.8
Q ss_pred hhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 40 HAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 40 ~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
...+.+.++.||+.+ ..+-..+++|.+..|+|.|..-+
T Consensus 71 ~psl~e~I~~AdlVI----sHAGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 71 SPSLTEDIRSADLVI----SHAGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred CccHHHHHhhccEEE----ecCCcchHHHHHHcCCCEEEEeC
Confidence 456778888899888 34445688999999999886543
No 271
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=46.09 E-value=75 Score=24.68 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=45.6
Q ss_pred CceEEEEEcCC------ccHHHHHHHHHHcCCCC------cEEEeCCCCh-------hHHHHHHHhccEEEE---cCCCc
Q 027511 3 VKVRFIVGGDG------PKRVRLEEMREKHSLQD------RVEMLGAVPH-------AQVRSVLISGHIFLN---SSLTE 60 (222)
Q Consensus 3 p~~~lvi~G~g------~~~~~l~~~~~~~~l~~------~V~~~g~v~~-------~~~~~ll~~adv~v~---~s~~E 60 (222)
+-.+++++|.- ...++++.++.+.+... ++-..+.-++ +.=...+.+||+.|. +-+.+
T Consensus 3 ~~~~IYLAGP~F~~~~i~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~ 82 (172)
T COG3613 3 KKKKIYLAGPVFRPDEIELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPD 82 (172)
T ss_pred CcceEEEecCcCCHHHHHHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCC
Confidence 45678899962 12256667777776532 1111111121 112356788999764 33344
Q ss_pred cccHHHHH---HHHhCCcEEEeCCC
Q 027511 61 AFCIAILE---AASCGLLTVSTRVG 82 (222)
Q Consensus 61 ~~g~~ilE---Ama~G~PvVa~~~g 82 (222)
.=+.+..| |.|.|+||++...-
T Consensus 83 ~DsGTa~E~GYa~AlgKPv~~~~~d 107 (172)
T COG3613 83 PDSGTAFELGYAIALGKPVYAYRKD 107 (172)
T ss_pred CCCcchHHHHHHHHcCCceEEEeec
Confidence 44556666 57999999987653
No 272
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=45.95 E-value=1.3e+02 Score=22.81 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=30.7
Q ss_pred hhHHHHHHHhccEEEEcCCCcccc--HHHHHHHHhCCcEEEeCC-CCcccc
Q 027511 40 HAQVRSVLISGHIFLNSSLTEAFC--IAILEAASCGLLTVSTRV-GGVPEV 87 (222)
Q Consensus 40 ~~~~~~ll~~adv~v~~s~~E~~g--~~ilEAma~G~PvVa~~~-gg~~e~ 87 (222)
.+...-+...+|.+|...- ++| .-+.||+..++||+.-+. |....+
T Consensus 82 ~~Rk~~m~~~sda~IvlpG--G~GTL~E~~~a~~~~kpv~~l~~~g~~~~~ 130 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGG--GYGTAIEILGAYALGGPVVVLRGTGGWTDR 130 (159)
T ss_pred chHHHHHHHHCCEEEEcCC--chhHHHHHHHHHHcCCCEEEEECCCcchHH
Confidence 3456667777999876543 444 456889999999987664 444333
No 273
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=45.88 E-value=82 Score=27.28 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=57.9
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCC------------hhHHHHHHHhccEEEE-cCCC----ccccHHHH
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVP------------HAQVRSVLISGHIFLN-SSLT----EAFCIAIL 67 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~------------~~~~~~ll~~adv~v~-~s~~----E~~g~~il 67 (222)
-++.|+|-|.--..+.+..+..+ ..+.+....+ ..++..++.++|+++. ++.+ +-+.-..+
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg--~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~ 240 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFG--CVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFI 240 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhcc--ceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHH
Confidence 46788898877777777777666 3466654421 2367888999999764 4443 35788899
Q ss_pred HHHHhCCcEEEeCCCCccc
Q 027511 68 EAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~~e 86 (222)
++|--|.-+|.+..|++.+
T Consensus 241 ~~mk~g~vlVN~aRG~iid 259 (336)
T KOG0069|consen 241 EKMKDGAVLVNTARGAIID 259 (336)
T ss_pred HhcCCCeEEEecccccccc
Confidence 9999999999888887654
No 274
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=45.29 E-value=1.3e+02 Score=22.56 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhc----c-EEEEcCCCccccHHHHHHH-HhCCcEE---EeCCCCcc--
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISG----H-IFLNSSLTEAFCIAILEAA-SCGLLTV---STRVGGVP-- 85 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~a----d-v~v~~s~~E~~g~~ilEAm-a~G~PvV---a~~~gg~~-- 85 (222)
+.+++.++++++ .+.|.-+=...++-+.++++ | +.++|.-+.+.++++..|+ +.++|+| -||.-.-.
T Consensus 31 ~~l~~~a~~~g~--~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aRE~f 108 (140)
T cd00466 31 ALLRELAAELGV--EVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAREEF 108 (140)
T ss_pred HHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccc
Confidence 344445555565 47777776677787877765 3 5778999999999999997 5789999 33332211
Q ss_pred ---ccccCCceEEeCC-CHHHHHHHHHHHHh
Q 027511 86 ---EVLPDDMVVLAEP-DPGDMVLAIRKAIS 112 (222)
Q Consensus 86 ---e~i~~~~~g~~~~-~~~~la~~i~~ll~ 112 (222)
.++.+-..|.... -.+...-++..+++
T Consensus 109 R~~S~is~~~~G~I~G~G~~gY~lAl~~~~~ 139 (140)
T cd00466 109 RHHSVISPVATGVIAGLGADGYRLALEALAS 139 (140)
T ss_pred ccccccccceeEEEEeCCHHHHHHHHHHHHh
Confidence 2344455565555 56677777666553
No 275
>PRK08605 D-lactate dehydrogenase; Validated
Probab=45.23 E-value=1.4e+02 Score=25.59 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=52.0
Q ss_pred ceEEEEEcCCccHHHHHHHH-HHcCCCCcEEEeCCCC----------hhHHHHHHHhccEEEE--cCCCcc---ccHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMR-EKHSLQDRVEMLGAVP----------HAQVRSVLISGHIFLN--SSLTEA---FCIAIL 67 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~-~~~~l~~~V~~~g~v~----------~~~~~~ll~~adv~v~--~s~~E~---~g~~il 67 (222)
+.++.|+|-|..-..+.+.+ +.++. +|.....-+ ..++.+++..+|+++. |...++ ++...+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l 223 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGS--DVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLF 223 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC--EEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHH
Confidence 45688999988777776665 43443 454433211 1367889999999764 233233 344668
Q ss_pred HHHHhCCcEEEeCCCCccc
Q 027511 68 EAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~~e 86 (222)
+.|.-|..+|-+..|+..+
T Consensus 224 ~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 224 KHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred hcCCCCcEEEECCCCcccC
Confidence 8888898888777776543
No 276
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=45.09 E-value=2e+02 Score=25.98 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=31.9
Q ss_pred cCCccHHHHHHHHHHc---CC------------CCcEEEeCCCChhHHHHHHHh-------ccEEEEcCC--CccccHHH
Q 027511 11 GDGPKRVRLEEMREKH---SL------------QDRVEMLGAVPHAQVRSVLIS-------GHIFLNSSL--TEAFCIAI 66 (222)
Q Consensus 11 G~g~~~~~l~~~~~~~---~l------------~~~V~~~g~v~~~~~~~ll~~-------adv~v~~s~--~E~~g~~i 66 (222)
|.|.....++++.+++ |+ +.+|-.+-+.+..-+.+++.. ..+.|+|.. .++-+-.+
T Consensus 102 G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eI 181 (440)
T COG1570 102 GLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEI 181 (440)
T ss_pred ChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHH
Confidence 4455555555554443 33 335555555555555555543 467777766 34444444
Q ss_pred HHHH
Q 027511 67 LEAA 70 (222)
Q Consensus 67 lEAm 70 (222)
++|.
T Consensus 182 v~aI 185 (440)
T COG1570 182 VEAI 185 (440)
T ss_pred HHHH
Confidence 4444
No 277
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.07 E-value=88 Score=26.67 Aligned_cols=46 Identities=22% Similarity=0.119 Sum_probs=36.9
Q ss_pred cEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCC
Q 027511 31 RVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRV 81 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~ 81 (222)
+|.-+++++++++..++..||+-+. +.|- +.+-|...|+|.+=.-.
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~V--RGED---SFVRAq~agkPflWHIY 284 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLV--RGED---SFVRAQLAGKPFLWHIY 284 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccccee--ecch---HHHHHHHcCCCcEEEec
Confidence 5777999999999999999999543 2333 67899999999986543
No 278
>PRK06436 glycerate dehydrogenase; Provisional
Probab=44.97 E-value=1.2e+02 Score=25.74 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=54.3
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC-------C-hhHHHHHHHhccEEEE--cCCCc---cccHHHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV-------P-HAQVRSVLISGHIFLN--SSLTE---AFCIAILEAA 70 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v-------~-~~~~~~ll~~adv~v~--~s~~E---~~g~~ilEAm 70 (222)
+-++-|+|-|..-..+.++++.+|. +|.....- . ..++.+++.+||+++. |...+ -++-..+++|
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~m 199 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGM--NIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLF 199 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcC
Confidence 3467899999888888888777765 34433311 0 2468899999999764 32223 3466889999
Q ss_pred HhCCcEEEeCCCCcc
Q 027511 71 SCGLLTVSTRVGGVP 85 (222)
Q Consensus 71 a~G~PvVa~~~gg~~ 85 (222)
--|.-+|-+..|++.
T Consensus 200 k~ga~lIN~sRG~~v 214 (303)
T PRK06436 200 RKGLAIINVARADVV 214 (303)
T ss_pred CCCeEEEECCCcccc
Confidence 888888876666544
No 279
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=44.87 E-value=1.1e+02 Score=25.24 Aligned_cols=84 Identities=8% Similarity=-0.031 Sum_probs=56.5
Q ss_pred ccHHHHHHHHhCCcEEEeCC---CCccccccCCceEEeC-CCH--HHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHH
Q 027511 62 FCIAILEAASCGLLTVSTRV---GGVPEVLPDDMVVLAE-PDP--GDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWH 133 (222)
Q Consensus 62 ~g~~ilEAma~G~PvVa~~~---gg~~e~i~~~~~g~~~-~~~--~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~ 133 (222)
++..+-=-|+|+-.|+.... .-..+.+.+....+.. .|. ++|.++|..+.++++ +..+.++++.+.+..+.+
T Consensus 157 ~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~ 236 (256)
T smart00672 157 WSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSME 236 (256)
T ss_pred chhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHH
Confidence 44455556788887776553 2223334444333322 233 449999999998877 778888999999989998
Q ss_pred HHHHHHHHHHHH
Q 027511 134 DVAKRTEIVYDR 145 (222)
Q Consensus 134 ~~~~~~~~~~~~ 145 (222)
.+..-+..++.+
T Consensus 237 ~~~~Y~~~ll~e 248 (256)
T smart00672 237 DVYDYMFHLLQE 248 (256)
T ss_pred HHHHHHHHHHHH
Confidence 888877776654
No 280
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=44.19 E-value=37 Score=25.86 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=50.7
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCC-------------------CcEEEe------------------CCCChhHHHH
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQ-------------------DRVEML------------------GAVPHAQVRS 45 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~-------------------~~V~~~------------------g~v~~~~~~~ 45 (222)
+..+++|.|.|..-....+++..+|.. ..+... .......+.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 568899999887665555555555442 112221 1223456778
Q ss_pred HHHhccEEEEcCC--Cccc----cHHHHHHHHhCCcEE--EeCCCCccccccCC
Q 027511 46 VLISGHIFLNSSL--TEAF----CIAILEAASCGLLTV--STRVGGVPEVLPDD 91 (222)
Q Consensus 46 ll~~adv~v~~s~--~E~~----g~~ilEAma~G~PvV--a~~~gg~~e~i~~~ 91 (222)
.+..+|+++.+.. .... ....+..|.-|..++ +.|.||..|.....
T Consensus 99 ~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~gG~iE~t~~~ 152 (168)
T PF01262_consen 99 FIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQGGSIETTRPT 152 (168)
T ss_dssp HHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGGT-SBTTEETT
T ss_pred HHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecCCCCcCccccC
Confidence 8888999886444 2233 344556666666665 78888888877655
No 281
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=43.14 E-value=1.5e+02 Score=23.81 Aligned_cols=37 Identities=19% Similarity=0.019 Sum_probs=27.2
Q ss_pred HHHhccEEEEcCCC-------------ccccHHHHHHHHhCCcEEEeCCC
Q 027511 46 VLISGHIFLNSSLT-------------EAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 46 ll~~adv~v~~s~~-------------E~~g~~ilEAma~G~PvVa~~~g 82 (222)
..+.||+++.|..+ ......+++++..|+||++...|
T Consensus 50 ~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V~v~~eg 99 (207)
T TIGR02536 50 EQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPIYILKPG 99 (207)
T ss_pred hhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeEEEEecc
Confidence 34578888887662 12346789999999999998755
No 282
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=42.88 E-value=2.2e+02 Score=24.49 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=58.1
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCCh-----------hHHHHHHHhccEEE-E-cCCCcc---ccHHHHH
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPH-----------AQVRSVLISGHIFL-N-SSLTEA---FCIAILE 68 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~-----------~~~~~ll~~adv~v-~-~s~~E~---~g~~ilE 68 (222)
-++-|+|-|.--..+.+.++-.+. +|.++..-++ -++.+++.+||++. + |...|+ ++-..++
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm--~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~ 224 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGM--KVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELA 224 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCC--EEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHH
Confidence 457789998888888888875554 5666665431 12779999999964 3 444343 5778899
Q ss_pred HHHhCCcEEEeCCCCccc
Q 027511 69 AASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 69 Ama~G~PvVa~~~gg~~e 86 (222)
.|--|.-+|-+..|++.+
T Consensus 225 ~mk~ga~lVNtaRG~~VD 242 (324)
T COG1052 225 KMKPGAILVNTARGGLVD 242 (324)
T ss_pred hCCCCeEEEECCCccccC
Confidence 999999999888887665
No 283
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=42.87 E-value=1.9e+02 Score=23.69 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=46.6
Q ss_pred CCcEEEeCC-CChh---HHHHHHHhccEEEE--cCC-CccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHH
Q 027511 29 QDRVEMLGA-VPHA---QVRSVLISGHIFLN--SSL-TEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPG 101 (222)
Q Consensus 29 ~~~V~~~g~-v~~~---~~~~ll~~adv~v~--~s~-~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~ 101 (222)
.++|.+.|. +|.+ +..+.+..||++|. +|. ......-+..|...|.|+|.-|.+..+ +.+....+...+..
T Consensus 154 rP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~--~d~~~~~~i~~~~~ 231 (244)
T PRK14138 154 RPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETP--LDDIATLKYNMDVV 231 (244)
T ss_pred CCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCC--CCcceeEEEeCCHH
Confidence 346777776 5653 34566778899765 343 233333344677889999987776333 22223345555666
Q ss_pred HHHHHHHH
Q 027511 102 DMVLAIRK 109 (222)
Q Consensus 102 ~la~~i~~ 109 (222)
++...+..
T Consensus 232 ~~l~~l~~ 239 (244)
T PRK14138 232 EFANRVMS 239 (244)
T ss_pred HHHHHHHH
Confidence 66655544
No 284
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=42.80 E-value=1.1e+02 Score=25.33 Aligned_cols=55 Identities=27% Similarity=0.321 Sum_probs=35.8
Q ss_pred CcEEEeCC-CChhH---HHHHHHhccEEEE--cCC-CccccHHHHHHHHhCCcEEEeCCCCc
Q 027511 30 DRVEMLGA-VPHAQ---VRSVLISGHIFLN--SSL-TEAFCIAILEAASCGLLTVSTRVGGV 84 (222)
Q Consensus 30 ~~V~~~g~-v~~~~---~~~ll~~adv~v~--~s~-~E~~g~~ilEAma~G~PvVa~~~gg~ 84 (222)
+.|.|.|. ++.++ ..+.++.||++|. ||. ......-+-+|...|.|+|.-|.+..
T Consensus 181 P~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t 242 (260)
T cd01409 181 PDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPT 242 (260)
T ss_pred CCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCC
Confidence 45777776 56544 4556677899765 444 23334445568889999998887643
No 285
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=42.73 E-value=1.2e+02 Score=26.09 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=54.7
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCC---------hhHHHHHHHhccEEEE-cCCC-c---cccHHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVP---------HAQVRSVLISGHIFLN-SSLT-E---AFCIAILEA 69 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~---------~~~~~~ll~~adv~v~-~s~~-E---~~g~~ilEA 69 (222)
+.++-|+|-|..-..+.+.+...|. +|.....-+ ..++.+++..||+++. .+.+ + -++-..+..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~ 223 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGA--TITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDH 223 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhc
Confidence 3468899999888777777777664 455444221 1257788999998653 3332 2 345567788
Q ss_pred HHhCCcEEEeCCCCccc
Q 027511 70 ASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 70 ma~G~PvVa~~~gg~~e 86 (222)
|.-|..+|.+..|+..+
T Consensus 224 mk~gavlIN~aRG~~vd 240 (330)
T PRK12480 224 VKKGAILVNAARGAVIN 240 (330)
T ss_pred CCCCcEEEEcCCccccC
Confidence 88899888888777654
No 286
>PRK00124 hypothetical protein; Validated
Probab=42.69 E-value=60 Score=24.68 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=58.4
Q ss_pred EEEEEcCC-ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCc
Q 027511 6 RFIVGGDG-PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGV 84 (222)
Q Consensus 6 ~lvi~G~g-~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~ 84 (222)
+++|=||. |-++++.+.+++++++ |.+..++++.--...-......+.++-.+.--..++|...-|=-||+.|.|=.
T Consensus 2 ~I~VDADACPVk~~i~r~a~r~~i~--v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~gDiVIT~Di~LA 79 (151)
T PRK00124 2 KIYVDADACPVKDIIIRVAERHGIP--VTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKGDIVITQDYGLA 79 (151)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCe--EEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCCCEEEeCCHHHH
Confidence 56677765 6788999999999985 66766543331110000123355566677777899999999999999998866
Q ss_pred cccccCCceEE
Q 027511 85 PEVLPDDMVVL 95 (222)
Q Consensus 85 ~e~i~~~~~g~ 95 (222)
..++..+...+
T Consensus 80 a~~l~Kga~vl 90 (151)
T PRK00124 80 ALALEKGAIVL 90 (151)
T ss_pred HHHHHCCCEEE
Confidence 66666665433
No 287
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=41.48 E-value=1.1e+02 Score=25.62 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=26.1
Q ss_pred hhHHHHHHHhc--cEEEEcC-CCccccHHHHHHHHhCCcEEE
Q 027511 40 HAQVRSVLISG--HIFLNSS-LTEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 40 ~~~~~~ll~~a--dv~v~~s-~~E~~g~~ilEAma~G~PvVa 78 (222)
..++.++++.- |+++.++ ..-++.++ +.|+..|++|++
T Consensus 56 ~~~~~~ll~~~~iD~V~Iatp~~~H~e~~-~~AL~aGkhVl~ 96 (342)
T COG0673 56 YTDLEELLADPDIDAVYIATPNALHAELA-LAALEAGKHVLC 96 (342)
T ss_pred cCCHHHHhcCCCCCEEEEcCCChhhHHHH-HHHHhcCCEEEE
Confidence 35677788774 6655444 45555554 899999998886
No 288
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=40.66 E-value=1.5e+02 Score=24.60 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=50.6
Q ss_pred CceEEEEEcCCccHHHHHHHHHHc----CCC-----CcEEEeCCC----------------------Ch---hHHHHHHH
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKH----SLQ-----DRVEMLGAV----------------------PH---AQVRSVLI 48 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~----~l~-----~~V~~~g~v----------------------~~---~~~~~ll~ 48 (222)
.+.++++.|.|.----+-+++... |++ .++.+...- +. .++.+.++
T Consensus 24 ~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~ 103 (255)
T PF03949_consen 24 SDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVK 103 (255)
T ss_dssp GG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHH
T ss_pred HHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHHHHH
Confidence 478999999886654444444443 775 566554321 11 26788888
Q ss_pred hc--cEEEEcC-CCccccHHHHHHHHh--CCcEEEeC
Q 027511 49 SG--HIFLNSS-LTEAFCIAILEAASC--GLLTVSTR 80 (222)
Q Consensus 49 ~a--dv~v~~s-~~E~~g~~ilEAma~--G~PvVa~~ 80 (222)
.+ |++|-.| ....|.--++++|+- -.|+|-+-
T Consensus 104 ~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~L 140 (255)
T PF03949_consen 104 GAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPL 140 (255)
T ss_dssp CH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred hcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEEC
Confidence 88 9999998 577888899999975 57888433
No 289
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=40.60 E-value=1.4e+02 Score=23.79 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=35.3
Q ss_pred CCCcEEEeCC-CChh---HHHHHHHhccEEEE--cCC-CccccHHHHHHHHhCCcEEEeCCC
Q 027511 28 LQDRVEMLGA-VPHA---QVRSVLISGHIFLN--SSL-TEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 28 l~~~V~~~g~-v~~~---~~~~ll~~adv~v~--~s~-~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
+.++|.|.|. +|.. +..+.+++||++|. ||. ......-+-+|...|.|+|.-|.+
T Consensus 130 lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 130 LKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred cCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 3456888786 4654 45666778999765 443 233333445677899999876654
No 290
>PRK08374 homoserine dehydrogenase; Provisional
Probab=40.54 E-value=1.4e+02 Score=25.71 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=34.1
Q ss_pred HHHHHHH--hccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcc
Q 027511 42 QVRSVLI--SGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVP 85 (222)
Q Consensus 42 ~~~~ll~--~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~ 85 (222)
+..++++ .+|++|-.+..+...-....++..|++||+.+.|.+.
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la 127 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIA 127 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHH
Confidence 3446663 6899998887777777788999999999999887433
No 291
>PRK08223 hypothetical protein; Validated
Probab=40.32 E-value=1.4e+02 Score=25.17 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCCcEE-EeCCCChhHHHHHHHhccEEEEcCCC---ccccHHHHHHHHhCCcEEEeCCCCc
Q 027511 17 VRLEEMREKHSLQDRVE-MLGAVPHAQVRSVLISGHIFLNSSLT---EAFCIAILEAASCGLLTVSTRVGGV 84 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~-~~g~v~~~~~~~ll~~adv~v~~s~~---E~~g~~ilEAma~G~PvVa~~~gg~ 84 (222)
+..++.+.+++-.-+|. +...++.+...+++..+|+.|..... ++--..---+...|+|+|.....|+
T Consensus 84 e~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~ 155 (287)
T PRK08223 84 EVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGM 155 (287)
T ss_pred HHHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 44455555554434454 34577778889999999999966653 2211122235788999998755443
No 292
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=40.29 E-value=43 Score=24.55 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=34.8
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEE---------------EeCCCChhHHHHHHHhccEEEEcCCCccccHHH
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVE---------------MLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAI 66 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~---------------~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~i 66 (222)
.+..++-|+|.|..-..|-....+.+.. |. +++..+..++.+++..+|+++.+--.+...-+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~--v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va 85 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHE--VVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVA 85 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSE--EEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCe--EEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHH
Confidence 4678999999988777777766666542 22 222222233345578899988877766655443
Q ss_pred HHHHH
Q 027511 67 LEAAS 71 (222)
Q Consensus 67 lEAma 71 (222)
|.++
T Consensus 86 -~~La 89 (127)
T PF10727_consen 86 -EQLA 89 (127)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 4444
No 293
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=40.25 E-value=67 Score=26.28 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=28.6
Q ss_pred eCCCChhHHHHHHHh-----ccE-EEEcCCCcccc-HHHHHHHHhCCcEEEeCCC
Q 027511 35 LGAVPHAQVRSVLIS-----GHI-FLNSSLTEAFC-IAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 35 ~g~v~~~~~~~ll~~-----adv-~v~~s~~E~~g-~~ilEAma~G~PvVa~~~g 82 (222)
.+.++.+.+.+.... +|. |+.+...-++. +.-+|.. .|+|||++|.-
T Consensus 162 ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~-lGkPVlsSNqa 215 (239)
T TIGR02990 162 MARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQA-IGKPVVTSNQA 215 (239)
T ss_pred eeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHH-HCCCEEEHHHH
Confidence 456778888887763 454 44433333333 2335544 89999999863
No 294
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=40.14 E-value=1.1e+02 Score=26.84 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=55.6
Q ss_pred EEEEEcCC---ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHH--HhCCcEEEeC
Q 027511 6 RFIVGGDG---PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAA--SCGLLTVSTR 80 (222)
Q Consensus 6 ~lvi~G~g---~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAm--a~G~PvVa~~ 80 (222)
.+-|+|.- .+..+++++.++.|+.-+..+.+.-+-+++.. +.+|.+-|..+. .++..+.+.| .+|+|.+...
T Consensus 162 ~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~~niv~~~--~~~~~~a~~L~~r~GiP~~~~~ 238 (406)
T cd01967 162 DVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAKLNLVHCS--RSMNYLAREMEERYGIPYMEVN 238 (406)
T ss_pred eEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCCEEEEECh--HHHHHHHHHHHHhhCCCEEEec
Confidence 46666642 24588999999999987777777666677776 555665443332 1344444444 3799998532
Q ss_pred CCCccccccCCceEEeCCCHHHHHHHHHHHHhc
Q 027511 81 VGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 81 ~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~ 113 (222)
.-|+ .+.+++.+.|.+++..
T Consensus 239 p~G~-------------~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 239 FYGF-------------EDTSESLRKIAKFFGD 258 (406)
T ss_pred CCcH-------------HHHHHHHHHHHHHhCC
Confidence 1111 1456666666666653
No 295
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=40.07 E-value=1.1e+02 Score=25.63 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCCcEEEeC--CCCh---hHHHHHH-HhccE-EEEcCCCccccHHHHHHHHhCCcEEEeCCCCccc
Q 027511 17 VRLEEMREKHSLQDRVEMLG--AVPH---AQVRSVL-ISGHI-FLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g--~v~~---~~~~~ll-~~adv-~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e 86 (222)
+-+++.+++++....+.... .-+. .++.+.+ +..|. .|.|.....+.-.+-+|...|+|||+.+......
T Consensus 53 ~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~~ 129 (322)
T COG1879 53 KGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPGP 129 (322)
T ss_pred HHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCCC
Confidence 44566677777412222222 1112 2344444 34566 4567778899999999999999999998875544
No 296
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=39.98 E-value=1.4e+02 Score=22.37 Aligned_cols=74 Identities=18% Similarity=0.079 Sum_probs=47.9
Q ss_pred ceEEEEEcC-CccHHHHHHHHHHcCCCCcEEEeCCC-----Chh----HHHHHHHh--ccEEEEcCCCccccHHHHHHHH
Q 027511 4 KVRFIVGGD-GPKRVRLEEMREKHSLQDRVEMLGAV-----PHA----QVRSVLIS--GHIFLNSSLTEAFCIAILEAAS 71 (222)
Q Consensus 4 ~~~lvi~G~-g~~~~~l~~~~~~~~l~~~V~~~g~v-----~~~----~~~~ll~~--adv~v~~s~~E~~g~~ilEAma 71 (222)
.+..+++|+ ....+.+++....+|.. +|.....- ..+ -+.++++. .+++++++...+-.+...=|..
T Consensus 34 ~v~av~~G~~~~~~~~l~~~l~~~G~d-~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~ 112 (164)
T PF01012_consen 34 EVTAVVLGPAEEAAEALRKALAKYGAD-KVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAAR 112 (164)
T ss_dssp EEEEEEEETCCCHHHHHHHHHHSTTES-EEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHH
T ss_pred eEEEEEEecchhhHHHHhhhhhhcCCc-EEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHH
Confidence 466788885 33445667777778874 45553221 122 23445555 7999999987777788888999
Q ss_pred hCCcEEE
Q 027511 72 CGLLTVS 78 (222)
Q Consensus 72 ~G~PvVa 78 (222)
.|.|+++
T Consensus 113 L~~~~v~ 119 (164)
T PF01012_consen 113 LGAPLVT 119 (164)
T ss_dssp HT-EEEE
T ss_pred hCCCccc
Confidence 9999985
No 297
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=39.98 E-value=2.2e+02 Score=26.25 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=55.9
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC-C-----------hhHHHHHHHhccEEEE-cCCC-cc---ccHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV-P-----------HAQVRSVLISGHIFLN-SSLT-EA---FCIAI 66 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v-~-----------~~~~~~ll~~adv~v~-~s~~-E~---~g~~i 66 (222)
+-++-|+|-|..-..+.+.++.++. +|...... + .+++.+++..||+++. .+.+ ++ ++-..
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~ 215 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEE 215 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHH
Confidence 3468899999888888888877765 35544321 1 1368899999999653 3332 33 45578
Q ss_pred HHHHHhCCcEEEeCCCCccc
Q 027511 67 LEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 67 lEAma~G~PvVa~~~gg~~e 86 (222)
++.|--|.-+|-+..|++.+
T Consensus 216 l~~mk~ga~lIN~aRG~~vd 235 (525)
T TIGR01327 216 LAKMKKGVIIVNCARGGIID 235 (525)
T ss_pred HhcCCCCeEEEEcCCCceeC
Confidence 88888888888777776554
No 298
>PF14851 FAM176: FAM176 family
Probab=39.35 E-value=1.3e+02 Score=22.98 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHhHhhcCchHHHHHHHHHHHHHHHH
Q 027511 135 VAKRTEIVYDRALECPNQNLVERLSRYLSCGAWAGKLFCLVMIIDYLLW 183 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 183 (222)
+.......|..+... .++.-=|+-+|.-+|.++.|++++..+.+
T Consensus 4 llSnsLaaya~I~~~-----PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 4 LLSNSLAAYAHIRDN-----PERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 345566777777654 33444555667778888888887766664
No 299
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=38.84 E-value=99 Score=25.55 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=27.2
Q ss_pred HhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCc
Q 027511 48 ISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGV 84 (222)
Q Consensus 48 ~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~ 84 (222)
...|+.+-.+-....--...+++..|++|++...+.+
T Consensus 60 ~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s~~Al 96 (265)
T PRK13303 60 QRPDLVVECAGHAALKEHVVPILKAGIDCAVISVGAL 96 (265)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeChHHh
Confidence 3478887766655555667788999999998776644
No 300
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=38.68 E-value=1.3e+02 Score=21.77 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCCcEEEe-CCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeCCCCc
Q 027511 16 RVRLEEMREKHSLQDRVEML-GAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTRVGGV 84 (222)
Q Consensus 16 ~~~l~~~~~~~~l~~~V~~~-g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~~gg~ 84 (222)
-+.+++.+.+....-+|.-. ..+..+....++..+|+.+.++..-..-..+.+ +...|+|+|.....|.
T Consensus 58 a~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~ 128 (135)
T PF00899_consen 58 AEAAKERLQEINPDVEVEAIPEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGF 128 (135)
T ss_dssp HHHHHHHHHHHSTTSEEEEEESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETT
T ss_pred HHHHHHHHHHhcCceeeeeeecccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 35566666665433445543 444577888999999999988776444444444 3467899997765444
No 301
>PLN03139 formate dehydrogenase; Provisional
Probab=38.65 E-value=1.9e+02 Score=25.49 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=55.2
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC-------------ChhHHHHHHHhccEEEE-cCC-Ccc---ccHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV-------------PHAQVRSVLISGHIFLN-SSL-TEA---FCIA 65 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v-------------~~~~~~~ll~~adv~v~-~s~-~E~---~g~~ 65 (222)
+-++-|+|-|..-..+.+....++. +|...... ..+++.+++..+|+++. .+. .++ ++-.
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 276 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNC--NLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKE 276 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCC--EEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHH
Confidence 3467899988887778887777765 34443321 12468889999999653 333 232 4556
Q ss_pred HHHHHHhCCcEEEeCCCCccc
Q 027511 66 ILEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 66 ilEAma~G~PvVa~~~gg~~e 86 (222)
.+..|--|.-+|-+..|++.+
T Consensus 277 ~l~~mk~ga~lIN~aRG~iVD 297 (386)
T PLN03139 277 RIAKMKKGVLIVNNARGAIMD 297 (386)
T ss_pred HHhhCCCCeEEEECCCCchhh
Confidence 788888898888888777653
No 302
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=38.10 E-value=1.9e+02 Score=22.43 Aligned_cols=73 Identities=10% Similarity=0.206 Sum_probs=42.7
Q ss_pred EeCCCChhHHHHHHHhccEEEEcCCCcccc--HHHHHHHH------hCCcEEEeCCCCccc-ccc-------CC------
Q 027511 34 MLGAVPHAQVRSVLISGHIFLNSSLTEAFC--IAILEAAS------CGLLTVSTRVGGVPE-VLP-------DD------ 91 (222)
Q Consensus 34 ~~g~v~~~~~~~ll~~adv~v~~s~~E~~g--~~ilEAma------~G~PvVa~~~gg~~e-~i~-------~~------ 91 (222)
..... ++....++..+|++|.-+ -++| -=++|+++ .++|++.-+..|.-+ ++. ++
T Consensus 82 ~~~~~-~~Rk~~m~~~sda~I~lP--GG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~ 158 (178)
T TIGR00730 82 EVNGM-HERKAMMAELADAFIAMP--GGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESH 158 (178)
T ss_pred EECCH-HHHHHHHHHhCCEEEEcC--CCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHH
Confidence 33444 466677888899988544 2333 23456664 489999988644332 221 21
Q ss_pred -ceEEeCCCHHHHHHHHHH
Q 027511 92 -MVVLAEPDPGDMVLAIRK 109 (222)
Q Consensus 92 -~~g~~~~~~~~la~~i~~ 109 (222)
......+|++++.+.|.+
T Consensus 159 ~~~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 159 LKLIHVVSRPDELIEQVQN 177 (178)
T ss_pred cCcEEEcCCHHHHHHHHHh
Confidence 123455677887777653
No 303
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=37.90 E-value=2.1e+02 Score=22.96 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccH
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCI 64 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~ 64 (222)
.+..+.++++|...-+.+-+..|-+.+..++...|.++.-+..-+||.
T Consensus 96 ~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgG 143 (220)
T PRK08883 96 DRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGG 143 (220)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCC
Confidence 455567788888777888888899999999999999887777666654
No 304
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=37.74 E-value=2.4e+02 Score=25.98 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=55.1
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC-Ch----------hHHHHHHHhccEEEE-cCCC-c---cccHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV-PH----------AQVRSVLISGHIFLN-SSLT-E---AFCIAIL 67 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v-~~----------~~~~~ll~~adv~v~-~s~~-E---~~g~~il 67 (222)
+-++-|+|-|..-..+.+.++.+|. +|...... +. .++.++++.||+++. .+.+ + -++-..+
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l 217 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEEL 217 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHH
Confidence 4568899999888888888887775 45544321 11 146789999999654 3332 2 3556788
Q ss_pred HHHHhCCcEEEeCCCCccc
Q 027511 68 EAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 68 EAma~G~PvVa~~~gg~~e 86 (222)
..|--|.-+|-+..|++.+
T Consensus 218 ~~mk~ga~lIN~aRG~~vd 236 (526)
T PRK13581 218 AKMKPGVRIINCARGGIID 236 (526)
T ss_pred hcCCCCeEEEECCCCceeC
Confidence 8888888888777776544
No 305
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=37.72 E-value=1.2e+02 Score=20.16 Aligned_cols=51 Identities=18% Similarity=0.336 Sum_probs=29.7
Q ss_pred EEEEcCCccH-----HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCc
Q 027511 7 FIVGGDGPKR-----VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTE 60 (222)
Q Consensus 7 lvi~G~g~~~-----~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E 60 (222)
++++|.|-.. ..+++...+.++...+... +-.++...+..+|+++.+....
T Consensus 4 livC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~---~~~~~~~~~~~~Dliist~~~~ 59 (89)
T cd05566 4 LVACGTGVATSTVVASKVKELLKENGIDVKVEQC---KIAEVPSLLDDADLIVSTTKVP 59 (89)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHCCCceEEEEe---cHHHhhcccCCCcEEEEcCCcC
Confidence 4555666433 4555666666664434332 3355555667899988777654
No 306
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.70 E-value=2.1e+02 Score=23.99 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=40.6
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCc
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTE 60 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E 60 (222)
..++.|+|.|..-..+-....+.+. .|.+.+.-+..++.+....+|+++..--.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~--~V~~~~r~~~~~~~~~~~~advvi~~vp~~ 58 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH--RVRVWSRRSGLSLAAVLADADVIVSAVSMK 58 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC--EEEEEeCCCCCCHHHHHhcCCEEEEECChH
Confidence 4578899999888888877776664 477777655577888889999977544333
No 307
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=37.49 E-value=2.9e+02 Score=24.44 Aligned_cols=98 Identities=7% Similarity=0.056 Sum_probs=57.4
Q ss_pred CCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC----cccc
Q 027511 12 DGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG----VPEV 87 (222)
Q Consensus 12 ~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg----~~e~ 87 (222)
.-++..-.+.++....-..++.+...-..+++-..++++|+.|-.-.+ +++=||+.|+|+|+-.... +.+-
T Consensus 248 ~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-----saI~al~~g~p~i~i~Y~~K~~~l~~~ 322 (385)
T COG2327 248 ASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-----SAIMALAFGVPAIAIAYDPKVRGLMQD 322 (385)
T ss_pred ccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-----HHHHHHhcCCCeEEEeecHHHHHHHHH
Confidence 333444455555554434667765443346777799999998854332 5677999999999765432 2222
Q ss_pred ccCCc-eE-EeCCCHHHHHHHHHHHHhcC
Q 027511 88 LPDDM-VV-LAEPDPGDMVLAIRKAISLL 114 (222)
Q Consensus 88 i~~~~-~g-~~~~~~~~la~~i~~ll~~~ 114 (222)
+.-.. .. ..+.+.+.+.+...+.+.+.
T Consensus 323 ~gl~~~~~~i~~~~~~~l~~~~~e~~~~~ 351 (385)
T COG2327 323 LGLPGFAIDIDPLDAEILSAVVLERLTKL 351 (385)
T ss_pred cCCCcccccCCCCchHHHHHHHHHHHhcc
Confidence 21111 11 12236778888877777653
No 308
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=37.49 E-value=1.7e+02 Score=22.91 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCCcEEEe-CCCChhHHHHHHHhccEEEEcCCCccccHHHHHH-HHhCCcEEEeCCCCccccc
Q 027511 17 VRLEEMREKHSLQDRVEML-GAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEA-ASCGLLTVSTRVGGVPEVL 88 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~-g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEA-ma~G~PvVa~~~gg~~e~i 88 (222)
+.+.+..+++.-.-+|... ..++ +...+++.+.|+.+.+......-..+-++ ...|+|.|.+...|....+
T Consensus 78 ~a~~~~L~~lNp~v~i~~~~~~~~-~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 150 (197)
T cd01492 78 EASLERLRALNPRVKVSVDTDDIS-EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFV 150 (197)
T ss_pred HHHHHHHHHHCCCCEEEEEecCcc-ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEE
Confidence 3444455555433345443 3343 44567889999999876543323333333 3478999988887765544
No 309
>PF07643 DUF1598: Protein of unknown function (DUF1598); InterPro: IPR011487 This is a family of Rhodopirellula baltica hypothetical proteins of about 500 amino acids in length.
Probab=37.43 E-value=87 Score=21.26 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccE
Q 027511 16 RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHI 52 (222)
Q Consensus 16 ~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv 52 (222)
...+..+.+.+|.++ |+..|--+...+..+|-.||.
T Consensus 30 ~~~~~~l~~~LG~Qd-V~V~Gip~~sh~ArvLVeADy 65 (84)
T PF07643_consen 30 AAWVDGLRQALGPQD-VTVYGIPADSHFARVLVEADY 65 (84)
T ss_pred HHHHHHHHHHhCCce-eEEEccCCccHHHHHHHHhhh
Confidence 345667778888876 888887777778888887775
No 310
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=37.29 E-value=46 Score=28.71 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
+.+++++++.|..--+..+|.++.+.+..+ ...|+||+++-.+ +++...-.+-+|||++
T Consensus 252 ~~l~~ll~~~gkk~y~i~~~~in~~kL~nf-~eiD~fV~~aCPr---~sidd~~~f~kPvlTP 310 (332)
T TIGR00322 252 KNLKKNLEEAGKTVLIILLSNVSPAKLLMF-DQIDVFVQVACPR---IAIDDGYLFNKPLLTP 310 (332)
T ss_pred HHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCcCEEEEecCCC---ceecchhhcCCccccH
Confidence 677778888888777778999987777544 4689999876642 2444555555666654
No 311
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=37.26 E-value=1.7e+02 Score=25.62 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=34.3
Q ss_pred eEEEEEc-CCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEc
Q 027511 5 VRFIVGG-DGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNS 56 (222)
Q Consensus 5 ~~lvi~G-~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~ 56 (222)
.++.|+| .|-.-..+.....+.|. .|...+.-+.++....+..||+++.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~~~~~~~~~~aDlVila 149 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDWDRAEDILADAGMVIVS 149 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcchhHHHHHhcCCEEEEe
Confidence 3577887 78777777777776664 36666643334566778889987763
No 312
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=37.03 E-value=91 Score=28.56 Aligned_cols=70 Identities=9% Similarity=0.037 Sum_probs=47.5
Q ss_pred EEEEEcCC-------ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHH--HhCCcE
Q 027511 6 RFIVGGDG-------PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAA--SCGLLT 76 (222)
Q Consensus 6 ~lvi~G~g-------~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAm--a~G~Pv 76 (222)
.+-|+|.. .+..+++++.+++|+.-++.|.+.-+-+++..+ .+|++-|.++.. +|..+.+.| -+|+|.
T Consensus 160 ~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l-~~A~~NIv~~~~--~g~~~A~~Le~~fGiP~ 236 (511)
T TIGR01278 160 SVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARL-PAAWLNICPYRE--IGLMAAEYLKEKFGQPY 236 (511)
T ss_pred cEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhc-ccCcEEEEechH--HHHHHHHHHHHHhCCCc
Confidence 35566643 245789999999999887777766556666664 666776655442 455566666 679998
Q ss_pred EE
Q 027511 77 VS 78 (222)
Q Consensus 77 Va 78 (222)
+.
T Consensus 237 i~ 238 (511)
T TIGR01278 237 IT 238 (511)
T ss_pred cc
Confidence 84
No 313
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=36.26 E-value=3.4e+02 Score=25.38 Aligned_cols=101 Identities=22% Similarity=0.133 Sum_probs=59.0
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcE---EEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHh--CCcEEE
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRV---EMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASC--GLLTVS 78 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V---~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~--G~PvVa 78 (222)
+.++.|++.|.......+.++++|+.-.| .++-.++.+.+.+++++.+.++..-..-...-..++++.. |+|+..
T Consensus 230 ~~di~iv~~G~~~~~a~ea~~~~Gi~~~v~~~~~i~Pld~~~i~~~~~~~~~vivvEe~~~~~~~~~~~~~~~~~~~v~~ 309 (595)
T TIGR03336 230 GAKIGVIASGIAYNYVKEALERLGVDVSVLKIGFTYPVPEGLVEEFLSGVEEVLVVEELEPVVEEQVKALAGTAGLNIKV 309 (595)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHcCCCeEEEEeCCCCCCCHHHHHHHHhcCCeEEEEeCCccHHHHHHHHHHHhcCCCeEE
Confidence 34578888888887777777777765444 3445567888999999887766544333334444554433 333331
Q ss_pred eCCCCccccccCCceEEeCCCHHHHHHHHHHH
Q 027511 79 TRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKA 110 (222)
Q Consensus 79 ~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~l 110 (222)
.|-...+++. .. .=|++.++++|.++
T Consensus 310 --~G~~d~fi~~-~~---~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 310 --HGKEDGFLPR-EG---ELNPDIVVNALAKF 335 (595)
T ss_pred --ecccCCccCc-cc---CcCHHHHHHHHHHh
Confidence 1222223331 11 11688888888765
No 314
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.21 E-value=1.6e+02 Score=25.59 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=41.1
Q ss_pred ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhc--cEEEEcCCCccccHHHHHHHHhCCcEEE
Q 027511 14 PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISG--HIFLNSSLTEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 14 ~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~a--dv~v~~s~~E~~g~~ilEAma~G~PvVa 78 (222)
++.+.-++.+++++++ +...+|. +..++... |+...++.+-.---.++-++..|++|++
T Consensus 41 ~s~~~A~~fAq~~~~~-~~k~y~s-----yEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~ 101 (351)
T KOG2741|consen 41 PSLERAKEFAQRHNIP-NPKAYGS-----YEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLC 101 (351)
T ss_pred ccHHHHHHHHHhcCCC-CCccccC-----HHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEe
Confidence 4667778889999987 6777777 45566665 7766655544444466778899999664
No 315
>PRK14852 hypothetical protein; Provisional
Probab=36.20 E-value=2.2e+02 Score=28.50 Aligned_cols=70 Identities=10% Similarity=-0.005 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCCcEEEe-CCCChhHHHHHHHhccEEEEcCCCccc---cHHHHHHHHhCCcEEEeCCCCccc
Q 027511 17 VRLEEMREKHSLQDRVEML-GAVPHAQVRSVLISGHIFLNSSLTEAF---CIAILEAASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~-g~v~~~~~~~ll~~adv~v~~s~~E~~---g~~ilEAma~G~PvVa~~~gg~~e 86 (222)
+.+.+.+.+.+-.-+|... ..++.+.+.+++..+|++|.....-.+ -...-.+...|+|+|.....|...
T Consensus 389 evaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g 462 (989)
T PRK14852 389 DVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSC 462 (989)
T ss_pred HHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCe
Confidence 4455556665544456554 677888899999999999976553221 233345678899999877655443
No 316
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=35.68 E-value=1.1e+02 Score=25.07 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=24.5
Q ss_pred cEEEEcCCCccccHHHHHHHHhCCcEEE-eCCCCccccc
Q 027511 51 HIFLNSSLTEAFCIAILEAASCGLLTVS-TRVGGVPEVL 88 (222)
Q Consensus 51 dv~v~~s~~E~~g~~ilEAma~G~PvVa-~~~gg~~e~i 88 (222)
|++|.....|. -.+++||.-+++|+|+ -|....++++
T Consensus 175 D~vvvln~~e~-~sAilEA~K~~IPTIgIVDtN~~P~li 212 (251)
T KOG0832|consen 175 DLVVVLNPEEN-HSAILEAAKMAIPTIGIVDTNCNPELI 212 (251)
T ss_pred ceeEecCcccc-cHHHHHHHHhCCCeEEEecCCCCccce
Confidence 55555555555 4589999999999995 3444444443
No 317
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=35.54 E-value=2.2e+02 Score=23.22 Aligned_cols=68 Identities=6% Similarity=-0.006 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCCCcEEE-eCCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeCCCCc
Q 027511 17 VRLEEMREKHSLQDRVEM-LGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTRVGGV 84 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~-~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~~gg~ 84 (222)
+.+.+.++++.-.-+|.. ...++.++..+++..+|++|.+......-..+-+ +...|+|+|.....|.
T Consensus 81 ~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~ 150 (240)
T TIGR02355 81 ESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRM 150 (240)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 444455555543334444 3456667788999999999988775433333333 4688999997554333
No 318
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=35.41 E-value=3e+02 Score=24.43 Aligned_cols=101 Identities=10% Similarity=0.028 Sum_probs=56.6
Q ss_pred CceEEEEEcCCccHHHHHHHHHHc---CCCC---cEEEeCCCChhHHHHHHHhccEEEEcCCC---ccccHHHHHHHH--
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKH---SLQD---RVEMLGAVPHAQVRSVLISGHIFLNSSLT---EAFCIAILEAAS-- 71 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~---~l~~---~V~~~g~v~~~~~~~ll~~adv~v~~s~~---E~~g~~ilEAma-- 71 (222)
++..++|++-|......++.++.+ |..- ++.++-.+|.+.+..++.+++-++..-.. -++|..+.|-++
T Consensus 266 edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al 345 (407)
T PRK09622 266 EDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSAV 345 (407)
T ss_pred CCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHH
Confidence 455677777776555555444433 3322 34556677888899999888776654442 234544433322
Q ss_pred hC-----CcEEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHh
Q 027511 72 CG-----LLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAIS 112 (222)
Q Consensus 72 ~G-----~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~ 112 (222)
.+ .|+|.....|. + -...+++++.+.+.++..
T Consensus 346 ~~~~~~~~~~v~~~~~g~------g---G~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 346 YQTQGTKHPVVSNYIYGL------G---GRDMTIAHLCEIFEELNE 382 (407)
T ss_pred hccCcCCCceEeeeEECC------C---CCCCCHHHHHHHHHHHHh
Confidence 21 46554433333 1 123367888887777664
No 319
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=35.37 E-value=1.5e+02 Score=20.48 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=26.6
Q ss_pred HHHHHHH--hccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 42 QVRSVLI--SGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 42 ~~~~ll~--~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
++.+++. ..|+.+..+-...-.-.+.+++..|++|++-.
T Consensus 53 ~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 53 DLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp SHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEc
Confidence 3666776 46776655555555556778999999888643
No 320
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=35.35 E-value=2.4e+02 Score=24.42 Aligned_cols=61 Identities=16% Similarity=0.041 Sum_probs=35.4
Q ss_pred EEEEEcCCccHHHHHHHHHHcCCCCcEEEeC------------------CCChhHHHHHHHhccEEEEcCCCccccHHHH
Q 027511 6 RFIVGGDGPKRVRLEEMREKHSLQDRVEMLG------------------AVPHAQVRSVLISGHIFLNSSLTEAFCIAIL 67 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g------------------~v~~~~~~~ll~~adv~v~~s~~E~~g~~il 67 (222)
++.|+|+|.....+...+.++|.. |..+. +.+.+.+..+.+.+|++. ...|..+...+
T Consensus 4 ~igilG~Gql~~ml~~aa~~lG~~--v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit--~e~e~i~~~~l 79 (372)
T PRK06019 4 TIGIIGGGQLGRMLALAAAPLGYK--VIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVIT--YEFENVPAEAL 79 (372)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCE--EEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEE--eCcCCCCHHHH
Confidence 678899887777777777777762 33222 223445556666666643 23455555454
Q ss_pred HHH
Q 027511 68 EAA 70 (222)
Q Consensus 68 EAm 70 (222)
+.+
T Consensus 80 ~~l 82 (372)
T PRK06019 80 DAL 82 (372)
T ss_pred HHH
Confidence 444
No 321
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=34.84 E-value=2.6e+02 Score=23.08 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=54.6
Q ss_pred HHHHcCCCC-c-EEEeCCCChhHHHHHHHhccEEEEcCC----CccccHHHHHHHHhCCcEEEeCCCCccccccCCceEE
Q 027511 22 MREKHSLQD-R-VEMLGAVPHAQVRSVLISGHIFLNSSL----TEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVL 95 (222)
Q Consensus 22 ~~~~~~l~~-~-V~~~g~v~~~~~~~ll~~adv~v~~s~----~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~ 95 (222)
.+.++|++. + |.+.|..+.+.=..++++..+-+.-++ ..++--++--|+.+|+|||.-+.+..+. . .-
T Consensus 166 ~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~----~--~~ 239 (256)
T TIGR00715 166 QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIP----G--VA 239 (256)
T ss_pred HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCC----C--Cc
Confidence 566666642 3 556888888888899988655333333 2356678888899999999877764321 1 02
Q ss_pred eCCCHHHHHHHHHHHH
Q 027511 96 AEPDPGDMVLAIRKAI 111 (222)
Q Consensus 96 ~~~~~~~la~~i~~ll 111 (222)
...+.+++.+.+.+++
T Consensus 240 ~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 240 IFDDISQLNQFVARLL 255 (256)
T ss_pred cCCCHHHHHHHHHHhc
Confidence 2356777777776543
No 322
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=34.79 E-value=2e+02 Score=24.75 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=27.0
Q ss_pred HHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 42 QVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 42 ~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+...++..+|+.+..+-.+..--..-.+...|++||.+.
T Consensus 71 ~~~el~~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~ 109 (341)
T PRK04207 71 TIEDLLEKADIVVDATPGGVGAKNKELYEKAGVKAIFQG 109 (341)
T ss_pred ChhHhhccCCEEEECCCchhhHHHHHHHHHCCCEEEEcC
Confidence 345566789998887765544444556778899998654
No 323
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=34.65 E-value=2e+02 Score=21.65 Aligned_cols=102 Identities=19% Similarity=0.165 Sum_probs=54.8
Q ss_pred EEEEc-CCccHHHHHH-HHHHcCCCCcEEEe---------------CCCChhHHHHHHHhccEEEEcCC---CccccHHH
Q 027511 7 FIVGG-DGPKRVRLEE-MREKHSLQDRVEML---------------GAVPHAQVRSVLISGHIFLNSSL---TEAFCIAI 66 (222)
Q Consensus 7 lvi~G-~g~~~~~l~~-~~~~~~l~~~V~~~---------------g~v~~~~~~~ll~~adv~v~~s~---~E~~g~~i 66 (222)
++|+| .|.-+..+.+ ++..++....+.|. -.++.++.........+....-. .-+.+..+
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i 83 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPAEI 83 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChHHH
Confidence 56666 4544544444 44444433345442 12345566666666666554333 33445566
Q ss_pred HHHHHhCCcEEEeCCCCcc-c---cccCCceEEeCCCHHHHHHHHH
Q 027511 67 LEAASCGLLTVSTRVGGVP-E---VLPDDMVVLAEPDPGDMVLAIR 108 (222)
Q Consensus 67 lEAma~G~PvVa~~~gg~~-e---~i~~~~~g~~~~~~~~la~~i~ 108 (222)
-++++.|..||++-.+... + ...+....++..+.+.+.+.+.
T Consensus 84 ~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~ 129 (179)
T TIGR02322 84 DQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLA 129 (179)
T ss_pred HHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHH
Confidence 6788889888876543211 1 1222334456667777776665
No 324
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=34.29 E-value=1.8e+02 Score=27.55 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCc---cccHHHHHHHHhC---CcEEEeCCC
Q 027511 18 RLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTE---AFCIAILEAASCG---LLTVSTRVG 82 (222)
Q Consensus 18 ~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E---~~g~~ilEAma~G---~PvVa~~~g 82 (222)
++.+.+++.+-.-+|..++.-+.+++..++...|+.++.+..- ..-..--.+...| +|++.....
T Consensus 173 El~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~ 243 (637)
T TIGR03693 173 ELAEIAEETDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQV 243 (637)
T ss_pred HHHHHHHHhCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 5556666654444566777667889999999999999988732 2233334566788 555554443
No 325
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=34.24 E-value=1.9e+02 Score=21.31 Aligned_cols=68 Identities=25% Similarity=0.212 Sum_probs=40.2
Q ss_pred CceEEEEEcCCccHHHHHHHHHHc--CCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEE
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKH--SLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTV 77 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~--~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvV 77 (222)
..+++-+.|+.+....+..+..+. +.+-+|..+... ++ ...||++.........--.++.. .-+.||+
T Consensus 26 ~~~~icv~g~~~~~~~L~~l~~~~~~~~~i~v~~~~~~--~~----~~~C~ilyi~~~~~~~~~~i~~~-~~~~~vL 95 (145)
T PF13689_consen 26 SPFRICVLGDDPFAEALSTLAGKQVGGRPIRVRRLSSP--NE----ISGCHILYISSSESSQLPEILRK-LPGKPVL 95 (145)
T ss_pred CCeEEEEECChHHHHHHHHhhhcccCCCcEEEEECCCC--cc----cccccEEEECCCChHHHHHHHHh-cCCCceE
Confidence 467889999888888888774332 222234444332 22 47899987766654433344443 3366666
No 326
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=34.05 E-value=85 Score=26.97 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHH----HhccEEEEcCC-C--ccccHHHHHHHHhCCcEEEeCCC
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVL----ISGHIFLNSSL-T--EAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll----~~adv~v~~s~-~--E~~g~~ilEAma~G~PvVa~~~g 82 (222)
++++..+++.|+. |.-.+--+-.|+...+ .+.|++..|.. + -++...+.+|...++|+++++.+
T Consensus 178 eelk~~A~~~Gl~--vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~~a~~~kiPli~sd~~ 248 (322)
T COG2984 178 EELKKEARKAGLE--VVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQVANKAKIPLIASDTS 248 (322)
T ss_pred HHHHHHHHHCCCE--EEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHHHHHHhCCCeecCCHH
Confidence 6777778888874 3333332334444433 55688766654 3 35567788999999999998865
No 327
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=33.84 E-value=2.6e+02 Score=22.76 Aligned_cols=68 Identities=7% Similarity=0.001 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCCcEE-EeCCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeCCCCcc
Q 027511 18 RLEEMREKHSLQDRVE-MLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTRVGGVP 85 (222)
Q Consensus 18 ~l~~~~~~~~l~~~V~-~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~~gg~~ 85 (222)
.+.+.+.++.-.-+|. +...+..++...++..+|+.|.+...-..-..+-+ +...|+|+|.....|..
T Consensus 90 ~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~ 159 (245)
T PRK05690 90 SARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRME 159 (245)
T ss_pred HHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCC
Confidence 3344444443333343 34456667788899999999988764322223333 35789999986655443
No 328
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=33.62 E-value=1.4e+02 Score=27.17 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=37.2
Q ss_pred CCceEEEEEc-CCccHHHHHH---HHHHcCCCCcEEEeCCC-ChhHHHHHHHhccEE
Q 027511 2 RVKVRFIVGG-DGPKRVRLEE---MREKHSLQDRVEMLGAV-PHAQVRSVLISGHIF 53 (222)
Q Consensus 2 ~p~~~lvi~G-~g~~~~~l~~---~~~~~~l~~~V~~~g~v-~~~~~~~ll~~adv~ 53 (222)
.||+-|+..| +|-.++.+.. +..+.++...|++.|.. .++++..+|..+++.
T Consensus 120 ~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~pIIyAGN~~a~~~V~~il~~~~~~ 176 (463)
T TIGR01319 120 NLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCAIIVAGNKDIQDEVQEIFDHADIF 176 (463)
T ss_pred CCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHHhcCCce
Confidence 5788666666 5555554443 55566777779999988 578899999988775
No 329
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=33.50 E-value=1.6e+02 Score=20.69 Aligned_cols=73 Identities=11% Similarity=0.149 Sum_probs=39.4
Q ss_pred EEEEEcCCccHHHHHHHHHHcC-CCCcEEEeCCCChhHHH---HHHHhccEEEEcCCC---ccccHHHHHHHHhCCcEEE
Q 027511 6 RFIVGGDGPKRVRLEEMREKHS-LQDRVEMLGAVPHAQVR---SVLISGHIFLNSSLT---EAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~~~~-l~~~V~~~g~v~~~~~~---~ll~~adv~v~~s~~---E~~g~~ilEAma~G~PvVa 78 (222)
++.+.|.|......+.+..++. +...+.+.... +... ..+..-|+++..|.. ...--.+-.|-..|.|||+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPT--EALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccc--hhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 5788898866644444433331 22234444331 2222 334567888877763 2233344455677999995
Q ss_pred eC
Q 027511 79 TR 80 (222)
Q Consensus 79 ~~ 80 (222)
--
T Consensus 80 iT 81 (128)
T cd05014 80 IT 81 (128)
T ss_pred Ee
Confidence 33
No 330
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=33.36 E-value=2.4e+02 Score=22.11 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=21.5
Q ss_pred hccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 49 SGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 49 ~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
.-|++|...-. .-..++.||...|+|+|+-
T Consensus 127 ~Pdlviv~~~~-~~~~ai~Ea~~l~IP~I~i 156 (193)
T cd01425 127 LPDLVIVLDPR-KEHQAIREASKLGIPVIAI 156 (193)
T ss_pred CCCEEEEeCCc-cchHHHHHHHHcCCCEEEE
Confidence 35666555432 2377899999999999963
No 331
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=33.32 E-value=1.1e+02 Score=22.19 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCc--EEEeCCCCcccc
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLL--TVSTRVGGVPEV 87 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~P--vVa~~~gg~~e~ 87 (222)
+..++++++++- ..+.+..+ +++...+..+|++++++...... .--|.+..+.+ -+..|.+-++++
T Consensus 47 ~ra~~l~~~~~~-~~~~~~~~---~~~~~~~~~~DivI~aT~~~~~~-i~~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 47 ERAEALAEEFGG-VNIEAIPL---EDLEEALQEADIVINATPSGMPI-ITEEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp HHHHHHHHHHTG-CSEEEEEG---GGHCHHHHTESEEEE-SSTTSTS-STHHHHTTTCHHCSEEEES-SS-SB
T ss_pred HHHHHHHHHcCc-cccceeeH---HHHHHHHhhCCeEEEecCCCCcc-cCHHHHHHHHhhhhceeccccCCCC
Confidence 334444444411 23444444 67778888999999877654431 11233344432 244555544443
No 332
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=33.29 E-value=2.5e+02 Score=22.96 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=47.7
Q ss_pred EEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhc---cEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 6 RFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISG---HIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~a---dv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
.+.|+|.||..++..+. +.+.+.+... .-...++... |+. .+..++=.-.++++.++|.++|.+..|
T Consensus 54 ~v~vvG~gP~l~e~~~~-----~~~~~vi~Ad---gA~~~l~~~gi~pDii--VTDlDgd~e~~~~~~~~g~i~VVHAHG 123 (232)
T COG1634 54 EVAVVGAGPSLEEEIKG-----LSSEVVIAAD---GAVSALLERGIRPDII--VTDLDGDPEDLLSCTAKGSIVVVHAHG 123 (232)
T ss_pred EEEEECCCCcHhhhhcc-----cccceEEecc---HHHHHHHHcCCCCcEE--EecCCCCHHHHHHhhccCCEEEEEecC
Confidence 46788888775544443 3344555332 4455555443 333 344566688899999999999998888
Q ss_pred CccccccC
Q 027511 83 GVPEVLPD 90 (222)
Q Consensus 83 g~~e~i~~ 90 (222)
...+-+..
T Consensus 124 DNi~~i~~ 131 (232)
T COG1634 124 DNIWRIPK 131 (232)
T ss_pred cCHHHhhc
Confidence 77665543
No 333
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=32.97 E-value=70 Score=26.68 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=34.9
Q ss_pred ccEE--EEcCCCccccHHHHHHHHhCCcEEEeCCCCc---cc-------cccCCc-------eEEeCCCHHHHHHHHHHH
Q 027511 50 GHIF--LNSSLTEAFCIAILEAASCGLLTVSTRVGGV---PE-------VLPDDM-------VVLAEPDPGDMVLAIRKA 110 (222)
Q Consensus 50 adv~--v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~---~e-------~i~~~~-------~g~~~~~~~~la~~i~~l 110 (222)
||+. =+|...|.|--++- +||+|||.+-.+-. .| .+..|. +.|-.++|+.+..+|..+
T Consensus 180 ADIiK~~ytg~~e~F~~vv~---~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~I 256 (265)
T COG1830 180 ADIIKTKYTGDPESFRRVVA---ACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAI 256 (265)
T ss_pred CCeEeecCCCChHHHHHHHH---hCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHH
Confidence 5764 34555677876653 78899998743222 11 122222 235555667777777666
Q ss_pred Hhc
Q 027511 111 ISL 113 (222)
Q Consensus 111 l~~ 113 (222)
+.+
T Consensus 257 vhe 259 (265)
T COG1830 257 VHE 259 (265)
T ss_pred hcC
Confidence 654
No 334
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=32.80 E-value=60 Score=29.07 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=40.0
Q ss_pred CCCceEEEEEcCCccH--HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHH
Q 027511 1 MRVKVRFIVGGDGPKR--VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAAS 71 (222)
Q Consensus 1 ~~p~~~lvi~G~g~~~--~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma 71 (222)
..|.+-|+=+|..+.+ +..++..+-+.-...+.|.|++...++.. ..+||.|+=-.+..--++.+|.++
T Consensus 273 ~~PrVGLLNIG~Ee~KGn~l~keA~~LL~~~~~inFiGnVEgrdi~~--G~~DVVVcDGFtGNV~LKt~EG~a 343 (437)
T PRK13845 273 KKPRIGLLNIGEEECKGNDLSLKTFELLSEEKRFHFAGNCEGRDVLS--GDFDVVVCDGFTGNVLLKFLESVG 343 (437)
T ss_pred CCCcEeEEECCcCCcCcCHHHHHHHHHHhcCCCCceEeeeecccccC--CCCCEEEeCCcchHHHHHHHHHHH
Confidence 3688888888854433 33333333332212478999997666543 368999865554333445555543
No 335
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.63 E-value=2.8e+02 Score=22.74 Aligned_cols=75 Identities=11% Similarity=0.184 Sum_probs=45.8
Q ss_pred ChhHHHHHHHhccEEEEcCC-CccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCC-CHHHHHHHHHHHHhcC
Q 027511 39 PHAQVRSVLISGHIFLNSSL-TEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISLL 114 (222)
Q Consensus 39 ~~~~~~~ll~~adv~v~~s~-~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~-~~~~la~~i~~ll~~~ 114 (222)
+...-..-+++||++|.-.. .|++--.+++.+ .+.+++....++..+--..+.-.+..| +...+++.|.+.+...
T Consensus 42 ~~p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~~~~~~dPH~Wldp~n~~~~a~~I~~~L~~~ 118 (264)
T cd01020 42 PTPTDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHDDKEGDNPHLWYDPETMSKVANALADALVKA 118 (264)
T ss_pred CCHHHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeecccccCCCCCCCceecCHhHHHHHHHHHHHHHHHh
Confidence 33445567889999887654 687777777766 456676654443211000111134544 6688888888888753
No 336
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=32.41 E-value=2.6e+02 Score=22.34 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=19.0
Q ss_pred cHHHHHHHHhCCcEEE-eCCCCcccc
Q 027511 63 CIAILEAASCGLLTVS-TRVGGVPEV 87 (222)
Q Consensus 63 g~~ilEAma~G~PvVa-~~~gg~~e~ 87 (222)
..++.||...|+|+|+ .|....++.
T Consensus 127 ~~AI~EA~kl~IP~IaivDTn~dp~~ 152 (204)
T PRK04020 127 AQAVKEAIEVGIPVVALCDTDNLTSN 152 (204)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCccc
Confidence 6799999999999996 444444444
No 337
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=32.38 E-value=2.6e+02 Score=24.81 Aligned_cols=75 Identities=11% Similarity=0.017 Sum_probs=42.0
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCCh--------------------hHHHHHHHh--ccEEEEcCCCccc
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPH--------------------AQVRSVLIS--GHIFLNSSLTEAF 62 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~--------------------~~~~~ll~~--adv~v~~s~~E~~ 62 (222)
++++-...|...+.+.+++++++- ..|.+...-.. +.+.++... +|+.|+....-.-
T Consensus 28 f~v~~Laa~~n~~~L~~q~~~f~p-~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G~~~l~~l~~~~~~D~vv~AivG~aG 106 (389)
T TIGR00243 28 FQVVALSAGKNVALMVEQILEFRP-KFVAIDDEASLKDLKTMLQQQGSRTEVLVGEEGICEMAALEDVDQVMNAIVGAAG 106 (389)
T ss_pred cEEEEEEcCCCHHHHHHHHHHcCC-CEEEEcCHHHHHHHHHHhhcCCCCcEEEECHHHHHHHHcCCCCCEEEEhhhcHhh
Confidence 555555567788888888888763 33333222111 233333332 4666665543222
Q ss_pred cHHHHHHHHhCCcEEEeC
Q 027511 63 CIAILEAASCGLLTVSTR 80 (222)
Q Consensus 63 g~~ilEAma~G~PvVa~~ 80 (222)
=...++|+..|+.+--.|
T Consensus 107 L~pt~~Ai~~gk~iaLAN 124 (389)
T TIGR00243 107 LLPTLAAIRAGKTIALAN 124 (389)
T ss_pred HHHHHHHHHCCCcEEEec
Confidence 235578888888776554
No 338
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=32.26 E-value=3.8e+02 Score=24.12 Aligned_cols=87 Identities=11% Similarity=0.236 Sum_probs=57.0
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCC-CcEEEeCCC--------C--hhHHH--------------HHHHhccEEEEc
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQ-DRVEMLGAV--------P--HAQVR--------------SVLISGHIFLNS 56 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~-~~V~~~g~v--------~--~~~~~--------------~ll~~adv~v~~ 56 (222)
..+.++++.|.|.---.+-++...++.. .+|...... + ..+.. ..+..+|+|+-.
T Consensus 197 l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~ 276 (432)
T COG0281 197 LKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGV 276 (432)
T ss_pred ccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccccccccCCCEEEEc
Confidence 3578999999988777777777777664 244332211 0 01111 134568999999
Q ss_pred CCCccccHHHHHHHHhCCcEEEeCCCCcccccc
Q 027511 57 SLTEAFCIAILEAASCGLLTVSTRVGGVPEVLP 89 (222)
Q Consensus 57 s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~ 89 (222)
|....|---+++.|+-. |+|-.-....+|+.+
T Consensus 277 S~~G~~t~e~V~~Ma~~-PiIfalaNP~pEi~P 308 (432)
T COG0281 277 SGVGAFTEEMVKEMAKH-PIIFALANPTPEITP 308 (432)
T ss_pred CCCCCcCHHHHHHhccC-CEEeecCCCCccCCH
Confidence 99888888899999888 777444444466554
No 339
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=31.93 E-value=1.5e+02 Score=19.46 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=33.9
Q ss_pred EEEEcCCccH-----HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCcc
Q 027511 7 FIVGGDGPKR-----VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEA 61 (222)
Q Consensus 7 lvi~G~g~~~-----~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~ 61 (222)
++++|.|-.. ..+++.++++|++-.+.... ..+.......+|+++.+.....
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~---~~~~~~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS---ILEVEEIADDADLILLTPQIAY 59 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE---TTTHHHHHTT-SEEEEEESSGG
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEec---ccccccccCCCcEEEEcCccch
Confidence 4566666432 66777888888754443333 3566777788999998877654
No 340
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=31.92 E-value=3.1e+02 Score=24.58 Aligned_cols=77 Identities=18% Similarity=0.060 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHh--ccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLIS--GHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~--adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
+|++++++.-..+.. .+...+.++-...+.+++.=..--+...++. -|+.| -..+|-+++.+.|+-..|+|.+--
T Consensus 76 ~P~~~ilvTt~T~Tg--~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~I-i~EtElWPnli~e~~~~~~p~~Lv 152 (419)
T COG1519 76 FPDLRILVTTMTPTG--AERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLI-IMETELWPNLINELKRRGIPLVLV 152 (419)
T ss_pred CCCCCEEEEecCccH--HHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEE-EEeccccHHHHHHHHHcCCCEEEE
Confidence 677777766533322 2222333443333444544222334555544 34443 345899999999999999999965
Q ss_pred CC
Q 027511 80 RV 81 (222)
Q Consensus 80 ~~ 81 (222)
|.
T Consensus 153 Na 154 (419)
T COG1519 153 NA 154 (419)
T ss_pred ee
Confidence 53
No 341
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=31.57 E-value=82 Score=28.32 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEE
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa 78 (222)
+++++++++.|...-+..+|.++...+ ..+...|+||.-+-.. +++.-.-++-+|+|+
T Consensus 286 ~~L~~~~~~~Gkk~y~l~~g~inPaKL-AnF~eIDvfV~iaCp~---lsid~s~~F~kPilt 343 (453)
T KOG2648|consen 286 EHLRKLLKAAGKKSYVLALGEINPAKL-ANFPEIDVFVQIACPR---LSIDWSKEFYKPLLT 343 (453)
T ss_pred HHHHHHHHHcCCceEEEEecCCCHHHh-cCCccccEEEEEeCcc---cchhhhhhhcccccc
Confidence 677888888888777888999976555 4455599998755422 333333444444443
No 342
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=31.30 E-value=2e+02 Score=22.45 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=44.9
Q ss_pred HHHHHHHhccEEEEcCC------CccccHHHHHHHHhCCcEEEeCC-----CCccccccCCceEE-eCC-CHHHHHHHHH
Q 027511 42 QVRSVLISGHIFLNSSL------TEAFCIAILEAASCGLLTVSTRV-----GGVPEVLPDDMVVL-AEP-DPGDMVLAIR 108 (222)
Q Consensus 42 ~~~~ll~~adv~v~~s~------~E~~g~~ilEAma~G~PvVa~~~-----gg~~e~i~~~~~g~-~~~-~~~~la~~i~ 108 (222)
-+...+..||+.+.--. +-.|.-.+=|.|-+++|+|++-. +...++-.-+...+ ..+ |-+.+...|.
T Consensus 93 al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il 172 (179)
T COG1618 93 ALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEIL 172 (179)
T ss_pred HHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHH
Confidence 34556667899876322 44677788889999999998654 22333333333333 444 5567777777
Q ss_pred HHHhc
Q 027511 109 KAISL 113 (222)
Q Consensus 109 ~ll~~ 113 (222)
.++..
T Consensus 173 ~~L~~ 177 (179)
T COG1618 173 SVLKG 177 (179)
T ss_pred HHhcc
Confidence 76654
No 343
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=31.29 E-value=2.1e+02 Score=21.00 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=24.8
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVL 47 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll 47 (222)
+++++-...+...+.+.+++++++. ..|.....-..+++...+
T Consensus 24 ~f~v~~Lsa~~n~~~L~~q~~~f~p-~~v~i~~~~~~~~l~~~~ 66 (129)
T PF02670_consen 24 KFEVVALSAGSNIEKLAEQAREFKP-KYVVIADEEAYEELKKAL 66 (129)
T ss_dssp TEEEEEEEESSTHHHHHHHHHHHT--SEEEESSHHHHHHHHHHH
T ss_pred ceEEEEEEcCCCHHHHHHHHHHhCC-CEEEEcCHHHHHHHHHHh
Confidence 5566555567788888888888853 334443332233444444
No 344
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=31.12 E-value=2.8e+02 Score=23.83 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=7.3
Q ss_pred hCCcEEEeCCCC
Q 027511 72 CGLLTVSTRVGG 83 (222)
Q Consensus 72 ~G~PvVa~~~gg 83 (222)
.|+.+|.+|..|
T Consensus 139 ~g~rliGPNc~G 150 (317)
T PTZ00187 139 NKTRLIGPNCPG 150 (317)
T ss_pred CCCEEECCCCce
Confidence 566666666544
No 345
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=31.10 E-value=1.6e+02 Score=26.00 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=45.0
Q ss_pred hhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe--CCCCc---cccccCC---ceEEeCCCHHHHHHHHHHHH
Q 027511 40 HAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST--RVGGV---PEVLPDD---MVVLAEPDPGDMVLAIRKAI 111 (222)
Q Consensus 40 ~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~--~~gg~---~e~i~~~---~~g~~~~~~~~la~~i~~ll 111 (222)
..++.++|..+|++| .-++.+++|+|..-+||+-- +..-. .+++.+- .-|-+..+.+++.++|....
T Consensus 277 ~~di~dll~~sDiLI-----TDySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~ 351 (388)
T COG1887 277 NADINDLLLVSDILI-----TDYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYD 351 (388)
T ss_pred chhHHHHHhhhCEEE-----eechHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhh
Confidence 478899999999987 23566999999999999943 22111 1111111 11223336678888888777
Q ss_pred hcCC
Q 027511 112 SLLP 115 (222)
Q Consensus 112 ~~~~ 115 (222)
.+.+
T Consensus 352 ~~~~ 355 (388)
T COG1887 352 EDGN 355 (388)
T ss_pred cccc
Confidence 6543
No 346
>PRK10637 cysG siroheme synthase; Provisional
Probab=30.60 E-value=4e+02 Score=23.95 Aligned_cols=84 Identities=10% Similarity=0.050 Sum_probs=47.7
Q ss_pred ceEEEEEcCCccHHH-HHHHHHHcCCCCcEEEeCCCChhHHHHH-----------------HHhccEEEEcCCCccccHH
Q 027511 4 KVRFIVGGDGPKRVR-LEEMREKHSLQDRVEMLGAVPHAQVRSV-----------------LISGHIFLNSSLTEAFCIA 65 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~-l~~~~~~~~l~~~V~~~g~v~~~~~~~l-----------------l~~adv~v~~s~~E~~g~~ 65 (222)
+-+++|+|+|..-.. ++.+.+ .+ .+|+.+..--.+++..+ +..+++.+.+...+...-.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~-~g--a~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~ 88 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLD-AG--ARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQR 88 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CC--CEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhHH
Confidence 557889998865432 333332 33 34555432223344333 4567766666555555555
Q ss_pred HH-HHHHhCCcEEEeCCCCccccccC
Q 027511 66 IL-EAASCGLLTVSTRVGGVPEVLPD 90 (222)
Q Consensus 66 il-EAma~G~PvVa~~~gg~~e~i~~ 90 (222)
+. +|-+.|++|-..+.....+++-+
T Consensus 89 i~~~a~~~~~lvN~~d~~~~~~f~~p 114 (457)
T PRK10637 89 VSEAAEARRIFCNVVDAPKAASFIMP 114 (457)
T ss_pred HHHHHHHcCcEEEECCCcccCeEEEe
Confidence 54 44477999988888766665544
No 347
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=30.60 E-value=3.1e+02 Score=27.74 Aligned_cols=43 Identities=2% Similarity=-0.045 Sum_probs=32.6
Q ss_pred CChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 38 VPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 38 v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
-+.+++..+++.+|+.|...-+..-.-++..|+..|+++++..
T Consensus 637 ~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 637 SDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred CCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 3557788888899998876655444567778889999999764
No 348
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=30.52 E-value=2.8e+02 Score=22.11 Aligned_cols=65 Identities=8% Similarity=-0.075 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHH--hccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLI--SGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~--~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
+.+++.+++++..-.+...+.-...++.+.+. +.|.++..+.... ...+-++...|.|||+-+..
T Consensus 30 ~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~ 96 (275)
T cd06295 30 GGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ-DPLPERLAETGLPFVVWGRP 96 (275)
T ss_pred HHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhCCCCEEEECCc
Confidence 34666677777653333333222344555553 5787665333211 23355667789999987654
No 349
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=30.45 E-value=3.3e+02 Score=24.88 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=51.1
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCC------------hhHHHHHHHhccEEEEcCCC-ccccHHHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVP------------HAQVRSVLISGHIFLNSSLT-EAFCIAILEAA 70 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~------------~~~~~~ll~~adv~v~~s~~-E~~g~~ilEAm 70 (222)
.-++.|+|-|..-..+...+...|. +|.....-+ ...+.++++.+|+++...-+ ..++-..++.|
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~M 331 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGA--RVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRM 331 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhcc
Confidence 4468999999887888888877775 466652211 12356778899998875433 33556677777
Q ss_pred HhCCcEEEeCCC
Q 027511 71 SCGLLTVSTRVG 82 (222)
Q Consensus 71 a~G~PvVa~~~g 82 (222)
.-|.-++....+
T Consensus 332 KpGAiLINvGr~ 343 (476)
T PTZ00075 332 KNNAIVGNIGHF 343 (476)
T ss_pred CCCcEEEEcCCC
Confidence 777776655444
No 350
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=30.28 E-value=97 Score=21.25 Aligned_cols=33 Identities=24% Similarity=0.059 Sum_probs=24.0
Q ss_pred HHHHhccEEEEcCCCccccHHHHH---HHHhCCcEE
Q 027511 45 SVLISGHIFLNSSLTEAFCIAILE---AASCGLLTV 77 (222)
Q Consensus 45 ~ll~~adv~v~~s~~E~~g~~ilE---Ama~G~PvV 77 (222)
.+|..||..++..-+|..-.+-+| |...|++|+
T Consensus 55 ~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 55 AMLSDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 456789998887777666555555 567888886
No 351
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.03 E-value=97 Score=25.23 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCcccc
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFC 63 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g 63 (222)
.++.+.++++|+..-+.+....+.+.+..++..+|-+++.+..-++|
T Consensus 119 ~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g 165 (244)
T PRK13125 119 EKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATG 165 (244)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCC
Confidence 34455566677755444455555666777777776665444433333
No 352
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=30.03 E-value=2.8e+02 Score=22.12 Aligned_cols=68 Identities=15% Similarity=0.039 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCCcEEE-eCCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeCCCCc
Q 027511 17 VRLEEMREKHSLQDRVEM-LGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTRVGGV 84 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~-~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~~gg~ 84 (222)
+.+.+.+++..-.-+|.. ...++.++..+++..+|++|.+...-.--..+-+ +...|+|.|.....|.
T Consensus 78 ~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~ 147 (228)
T cd00757 78 EAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGF 147 (228)
T ss_pred HHHHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 444555555443334443 3455667788899999999987653322222333 3468899998765543
No 353
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=30.01 E-value=3.6e+02 Score=24.51 Aligned_cols=40 Identities=10% Similarity=-0.058 Sum_probs=26.0
Q ss_pred hHHHHHHHh--ccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 41 AQVRSVLIS--GHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 41 ~~~~~ll~~--adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
+.+.++... +|++|.....-.--...++|+.+|+.|...|
T Consensus 139 egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALAN 180 (454)
T PLN02696 139 EGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN 180 (454)
T ss_pred HHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEec
Confidence 556666664 4777766554322234489999999988766
No 354
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=29.97 E-value=2.6e+02 Score=21.51 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=17.3
Q ss_pred CChhHHHHHHHhccEEEEcCCCccc
Q 027511 38 VPHAQVRSVLISGHIFLNSSLTEAF 62 (222)
Q Consensus 38 v~~~~~~~ll~~adv~v~~s~~E~~ 62 (222)
.+.+++.+.++.+|+++.++.....
T Consensus 86 ~~~~~~~~~~~~~diVi~at~~g~~ 110 (194)
T cd01078 86 SDDAARAAAIKGADVVFAAGAAGVE 110 (194)
T ss_pred CCHHHHHHHHhcCCEEEECCCCCce
Confidence 3456667788889998887664443
No 355
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=29.40 E-value=4.6e+02 Score=24.22 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=34.6
Q ss_pred HHHHHHhccEEEEcCCCcc--c----cHHHHHHHHhCCcEE--EeCCCCccccccCC
Q 027511 43 VRSVLISGHIFLNSSLTEA--F----CIAILEAASCGLLTV--STRVGGVPEVLPDD 91 (222)
Q Consensus 43 ~~~ll~~adv~v~~s~~E~--~----g~~ilEAma~G~PvV--a~~~gg~~e~i~~~ 91 (222)
+.+.++.+|+.+.+....+ . --..++.|--|..+| +++.||..|....+
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~ 297 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPG 297 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCc
Confidence 4456678999988875332 2 244578888887776 88999988887443
No 356
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=29.35 E-value=4.1e+02 Score=24.97 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=30.2
Q ss_pred HHHHHHHh--ccEEEEcCC-CccccHHHHHHHH--hCCcEEE
Q 027511 42 QVRSVLIS--GHIFLNSSL-TEAFCIAILEAAS--CGLLTVS 78 (222)
Q Consensus 42 ~~~~ll~~--adv~v~~s~-~E~~g~~ilEAma--~G~PvVa 78 (222)
++.++++. .|++|-.|. ...|.-.++++|+ +..|+|-
T Consensus 392 ~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIF 433 (581)
T PLN03129 392 SLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIF 433 (581)
T ss_pred CHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 56677777 899998886 5678889999998 7888883
No 357
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=29.31 E-value=2.1e+02 Score=27.40 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=36.3
Q ss_pred eEEEEEc--CCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEE
Q 027511 5 VRFIVGG--DGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 5 ~~lvi~G--~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa 78 (222)
-.|+|-| .+..|.+++++++++|- ...++|+ +..|.+|.- +..|.++--|...|+|||.
T Consensus 597 ktfV~TG~l~~~~R~e~~~lie~~Gg----kv~ssVS--------kktd~LV~G---~~aGsKl~KA~~LGI~Ii~ 657 (669)
T PRK14350 597 KKFCITGSFNGYSRSVLIDKLTKKGA----IFNTCVT--------KYLDFLLVG---EKAGLKLKKANNLGIKIMS 657 (669)
T ss_pred cEEEEecccCCCCHHHHHHHHHHcCC----EEecccc--------CCCcEEEEC---CCCCchHHHHHHcCCEEec
Confidence 3556666 23456666666666542 2344544 234555553 4567899999999999885
No 358
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=29.28 E-value=2.2e+02 Score=23.78 Aligned_cols=81 Identities=17% Similarity=0.125 Sum_probs=54.1
Q ss_pred ceEEEEEcC-CccHHHHHHHHHHcCCCCcEEEeCCC------------------------ChhHHHHHHHhccEEEEcCC
Q 027511 4 KVRFIVGGD-GPKRVRLEEMREKHSLQDRVEMLGAV------------------------PHAQVRSVLISGHIFLNSSL 58 (222)
Q Consensus 4 ~~~lvi~G~-g~~~~~l~~~~~~~~l~~~V~~~g~v------------------------~~~~~~~ll~~adv~v~~s~ 58 (222)
.+++.|+|. |.+-..+.+.+.+.. .+.+.+.+ -.++.......+|++|-=+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~---~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~ 78 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP---DLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTT 78 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC---CceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCC
Confidence 478899994 777788888776543 12221111 12234556667899998888
Q ss_pred CccccHHHHHHHHhCCcEEEeCCCCcccc
Q 027511 59 TEAFCIAILEAASCGLLTVSTRVGGVPEV 87 (222)
Q Consensus 59 ~E~~g~~ilEAma~G~PvVa~~~gg~~e~ 87 (222)
.++.---+=.+..+|+|+|.-..|-..+-
T Consensus 79 P~~~~~~l~~~~~~~~~lVIGTTGf~~e~ 107 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIGTTGFTEEQ 107 (266)
T ss_pred chhhHHHHHHHHHcCCCeEEECCCCCHHH
Confidence 77776667778899999987777765554
No 359
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=28.78 E-value=1.2e+02 Score=21.18 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=15.9
Q ss_pred CCceEEEEEcCC--ccHHHHHHHHHHc
Q 027511 2 RVKVRFIVGGDG--PKRVRLEEMREKH 26 (222)
Q Consensus 2 ~p~~~lvi~G~g--~~~~~l~~~~~~~ 26 (222)
+|+.+|+++||. .+-+-+.++++++
T Consensus 62 fP~~kfiLIGDsgq~DpeiY~~ia~~~ 88 (100)
T PF09949_consen 62 FPERKFILIGDSGQHDPEIYAEIARRF 88 (100)
T ss_pred CCCCcEEEEeeCCCcCHHHHHHHHHHC
Confidence 577888888853 2335556666665
No 360
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=28.75 E-value=3.6e+02 Score=22.86 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=43.0
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEE-eCC--CCh--------hHHHHHHHhc--cEEEEc-CCCccccHHHHH
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEM-LGA--VPH--------AQVRSVLISG--HIFLNS-SLTEAFCIAILE 68 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~-~g~--v~~--------~~~~~ll~~a--dv~v~~-s~~E~~g~~ilE 68 (222)
|++.+.++-.|.......+..+.+++...+.+ ++. -+. ..+.++++.- |+.+.- ...+++. ..+=
T Consensus 27 ~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la-~a~a 105 (365)
T TIGR00236 27 PEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLA-GALA 105 (365)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHH-HHHH
Confidence 44444444444445677777777888655543 333 111 2344555553 775543 4455554 3455
Q ss_pred HHHhCCcEEEeC
Q 027511 69 AASCGLLTVSTR 80 (222)
Q Consensus 69 Ama~G~PvVa~~ 80 (222)
|...|+|++...
T Consensus 106 a~~~~ipv~h~~ 117 (365)
T TIGR00236 106 AFYLQIPVGHVE 117 (365)
T ss_pred HHHhCCCEEEEe
Confidence 788999998654
No 361
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.53 E-value=1.1e+02 Score=19.79 Aligned_cols=69 Identities=19% Similarity=0.113 Sum_probs=34.2
Q ss_pred EEEcCCccHH---HHHHHHHHc-CCCCcEEEeCCCChhHH--HHHHHhccEEEEcCCCcc---ccHHHHHHHHhCCcEEE
Q 027511 8 IVGGDGPKRV---RLEEMREKH-SLQDRVEMLGAVPHAQV--RSVLISGHIFLNSSLTEA---FCIAILEAASCGLLTVS 78 (222)
Q Consensus 8 vi~G~g~~~~---~l~~~~~~~-~l~~~V~~~g~v~~~~~--~~ll~~adv~v~~s~~E~---~g~~ilEAma~G~PvVa 78 (222)
++.|.|.... .+.....+. + .++.+...-..... ...+..-|+++.-|.... .-..+-.+-..|.++|+
T Consensus 2 ~i~g~G~s~~~a~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 2 FVIGIGGSGAIAAYFALELLELTG--IEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred EEEEcCHHHHHHHHHHHHHhcccC--CceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 5677775553 333333443 3 34555444211111 233455688776655322 22233445577888875
No 362
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.47 E-value=3e+02 Score=21.72 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChh---H-HHHHHH-hccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHA---Q-VRSVLI-SGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~---~-~~~ll~-~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
..+++.+++++..-.+.....-+.+ + +..+.+ +.|.++..+....-. .+.++...|.|+|+-+..
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~-~~~~~~~~~ipvv~~~~~ 88 (264)
T cd01574 19 AAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDDAD-AALAAAPADVPVVFVDGS 88 (264)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCCChH-HHHHHHhcCCCEEEEecc
Confidence 5566677777764333333322212 2 222333 367776543322212 566778889999998754
No 363
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.43 E-value=1.5e+02 Score=20.27 Aligned_cols=49 Identities=12% Similarity=0.300 Sum_probs=32.3
Q ss_pred EEEEcCCcc-----HHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC
Q 027511 7 FIVGGDGPK-----RVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL 58 (222)
Q Consensus 7 lvi~G~g~~-----~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~ 58 (222)
++++|.|-. ...+++..++.|++ +.+.. .+-.++......+|+++.++.
T Consensus 6 LvvCgsG~~TS~m~~~ki~~~l~~~gi~--~~v~~-~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 6 IVACGGAVATSTMAAEEIKELCQSHNIP--VELIQ-CRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCe--EEEEE-ecHHHHhhhcCCCCEEEECCc
Confidence 466677642 36667778888885 44433 334567777788899987764
No 364
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=28.37 E-value=3.1e+02 Score=21.91 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=21.9
Q ss_pred HHhccEEEEcCC--------CccccHHHHHHHHhCCcEEEeCCC
Q 027511 47 LISGHIFLNSSL--------TEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 47 l~~adv~v~~s~--------~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
...+|+.|-.-. .|.+...+-..-..|+|+|+-|.+
T Consensus 117 ~~~~dvIVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiP 160 (203)
T COG0062 117 PESADVIVDALFGTGLSGPLREPFASLIEAINASGKPIVAVDIP 160 (203)
T ss_pred cccCCEEEEeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCC
Confidence 345676654332 444554444444599999998874
No 365
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=28.33 E-value=2.9e+02 Score=21.63 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCCcEEE-eCCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeCCCCc
Q 027511 18 RLEEMREKHSLQDRVEM-LGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTRVGGV 84 (222)
Q Consensus 18 ~l~~~~~~~~l~~~V~~-~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~~gg~ 84 (222)
.+.+.+++..-.-++.. ...++.+.+.++++.+|+.|.+...-..-..+-+ +...++|.|.....|.
T Consensus 79 ~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~ 147 (202)
T TIGR02356 79 VAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGF 147 (202)
T ss_pred HHHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 33344444332223333 3455667788899999999988654322223333 3678999997665443
No 366
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=28.19 E-value=2e+02 Score=23.69 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=48.8
Q ss_pred CceEEEEEcCC-----ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEE-----EEcCCCccccHHHHHHHHh
Q 027511 3 VKVRFIVGGDG-----PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIF-----LNSSLTEAFCIAILEAASC 72 (222)
Q Consensus 3 p~~~lvi~G~g-----~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~-----v~~s~~E~~g~~ilEAma~ 72 (222)
+.-++++-|+. +.-..+++.+.+.|+++.-.++..-+.+......+..+++ +.-+..=+...++.-|-..
T Consensus 81 k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~fHm~RA~~ia~~~ 160 (239)
T PRK10834 81 KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM 160 (239)
T ss_pred CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHc
Confidence 34457777752 2335566667778888877777777666666666655542 2223334556777777788
Q ss_pred CCcEEEeC
Q 027511 73 GLLTVSTR 80 (222)
Q Consensus 73 G~PvVa~~ 80 (222)
|+.+++-.
T Consensus 161 Gi~~~~~~ 168 (239)
T PRK10834 161 GIQAQCYA 168 (239)
T ss_pred CCceEEEe
Confidence 88877653
No 367
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=28.15 E-value=1.8e+02 Score=23.62 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=43.0
Q ss_pred CccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCcccc
Q 027511 13 GPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFC 63 (222)
Q Consensus 13 g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g 63 (222)
.+.-.+..++++++|...-|.+-+..|-+.+..++...|+.+.-|..-+||
T Consensus 95 ~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfg 145 (220)
T COG0036 95 TEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFG 145 (220)
T ss_pred CcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCc
Confidence 345567788888899888899999999999999999999988888877775
No 368
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.05 E-value=2.3e+02 Score=25.18 Aligned_cols=71 Identities=7% Similarity=0.048 Sum_probs=46.4
Q ss_pred EEEEEcCC-------ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHH--HhCCcE
Q 027511 6 RFIVGGDG-------PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAA--SCGLLT 76 (222)
Q Consensus 6 ~lvi~G~g-------~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAm--a~G~Pv 76 (222)
.+-|+|.. .+..+++++.++.|+.-+..|.+..+-+++.+. .+|++-+..+. .++..+-+.| -+|+|.
T Consensus 164 ~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~-~~A~lniv~~~--~~~~~~a~~L~~~~GiP~ 240 (430)
T cd01981 164 SVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNEL-PKAWFNIVPYR--EYGLSAALYLEEEFGMPS 240 (430)
T ss_pred cEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhh-hhCeEEEEecH--HHHHHHHHHHHHHhCCCe
Confidence 46666642 355789999999999887888877666777663 44444443222 2355666666 579998
Q ss_pred EEe
Q 027511 77 VST 79 (222)
Q Consensus 77 Va~ 79 (222)
+..
T Consensus 241 ~~~ 243 (430)
T cd01981 241 VKI 243 (430)
T ss_pred Eec
Confidence 764
No 369
>PLN02494 adenosylhomocysteinase
Probab=27.95 E-value=3.8e+02 Score=24.48 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=49.9
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCCh------------hHHHHHHHhccEEEEcCCCcc-ccHHHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPH------------AQVRSVLISGHIFLNSSLTEA-FCIAILEAA 70 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~------------~~~~~ll~~adv~v~~s~~E~-~g~~ilEAm 70 (222)
.-.++|+|-|+.-..+...++.+|. +|.....-+. ..+.+++..+|+++.++-+.+ ..-..++.|
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~~M 331 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGA--RVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKM 331 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHhcC
Confidence 3468899999888888888887776 4665533221 124567788999988666554 356677777
Q ss_pred HhCCcEEEe
Q 027511 71 SCGLLTVST 79 (222)
Q Consensus 71 a~G~PvVa~ 79 (222)
.-|.-++..
T Consensus 332 K~GAiLiNv 340 (477)
T PLN02494 332 KNNAIVCNI 340 (477)
T ss_pred CCCCEEEEc
Confidence 777655543
No 370
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=27.79 E-value=1e+02 Score=27.30 Aligned_cols=84 Identities=7% Similarity=-0.067 Sum_probs=57.1
Q ss_pred ccHHHHHHHHhCCcEEEeCCC---CccccccCCceEEe-CC--CHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCHH
Q 027511 62 FCIAILEAASCGLLTVSTRVG---GVPEVLPDDMVVLA-EP--DPGDMVLAIRKAISLLP--KIDPQVMHERMKKLYNWH 133 (222)
Q Consensus 62 ~g~~ilEAma~G~PvVa~~~g---g~~e~i~~~~~g~~-~~--~~~~la~~i~~ll~~~~--~~~~~~~~~~~~~~fs~~ 133 (222)
++..+-=-|+||-.|+..... -..+.+.+....+. .. +..+|.++|..+.++++ +..+.++++.+.+..+.+
T Consensus 226 ~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~ 305 (395)
T PF05686_consen 226 WSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTME 305 (395)
T ss_pred eehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhhh
Confidence 445556668999888875432 22233344444332 22 67999999998888877 778888888888888888
Q ss_pred HHHHHHHHHHHH
Q 027511 134 DVAKRTEIVYDR 145 (222)
Q Consensus 134 ~~~~~~~~~~~~ 145 (222)
.+..-+..++.+
T Consensus 306 ~~~~Y~~~LL~e 317 (395)
T PF05686_consen 306 DVYCYWRRLLLE 317 (395)
T ss_pred HHHHHHHHHHHH
Confidence 877766555544
No 371
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=27.77 E-value=58 Score=27.65 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEe
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVST 79 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~ 79 (222)
+.+++++++.|..--+...|.++.+.+..+ ...|+||..+-.+ +++...--+-+|||++
T Consensus 229 ~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf-~eid~fV~~aCPr---~~idd~~~f~kPvltP 287 (307)
T PF01866_consen 229 KRLKKLLKKAGKKSYTLSVGEINPAKLANF-PEIDAFVQIACPR---LSIDDSKDFYKPVLTP 287 (307)
T ss_dssp HHHHHHHHHTT-EEEEEEESS--GGGGTTS----SEEEE-S-TH---HHHT--S--SS-EE-H
T ss_pred HHHHHHHHHcCCEEEEEEECCCCHHHHhcC-cccCEEEEecCCC---cccCchhhcCCcccCH
Confidence 677778888887766777999987777666 4789999887654 3566666777788764
No 372
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=27.68 E-value=1.6e+02 Score=20.20 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=26.2
Q ss_pred CcEEEe-CCCChhHHH--HHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 30 DRVEML-GAVPHAQVR--SVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 30 ~~V~~~-g~v~~~~~~--~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
+.+.+. |. +.|+. .+.......|.+...+.-...+--|-..|+||+.+...
T Consensus 41 ~~lvIt~gd--R~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~i~vi~t~~d 94 (105)
T PF07085_consen 41 GDLVITPGD--REDIQLAAIEAGIACIILTGGLEPSEEVLELAKELGIPVISTPYD 94 (105)
T ss_dssp TEEEEEETT---HHHHHHHCCTTECEEEEETT----HHHHHHHHHHT-EEEE-SS-
T ss_pred CeEEEEeCC--cHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCCCEEEEECCC
Confidence 445555 54 33333 33333455777776666666776777888888887654
No 373
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=27.60 E-value=1.5e+02 Score=26.57 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=43.7
Q ss_pred EEEEEcCC---ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHH--HhCCcEEE
Q 027511 6 RFIVGGDG---PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAA--SCGLLTVS 78 (222)
Q Consensus 6 ~lvi~G~g---~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAm--a~G~PvVa 78 (222)
.+-|+|.. .+..+++++.+++|+.-+..+.+.-+-+++...- +|.+-|..+ ...+..+.+.| -+|+|.+.
T Consensus 199 ~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~-~A~lniv~~--~~~~~~~a~~L~e~~GiP~~~ 273 (456)
T TIGR01283 199 DINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAH-RAKLNMVQC--SKSMINLARKMEEKYGIPYFE 273 (456)
T ss_pred cEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcc-cCcEEEEEC--HhHHHHHHHHHHHHcCCCEEe
Confidence 46666732 2446899999999998777777765555555433 334433221 12345666777 57999995
No 374
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=27.57 E-value=3.3e+02 Score=23.49 Aligned_cols=74 Identities=14% Similarity=0.007 Sum_probs=41.8
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEe---------------CCCChhHHHHHHHhccEEEEcCCCccccHHHHH
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEML---------------GAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE 68 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~---------------g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE 68 (222)
.+++.|+|-|..-......+.+.. .+.+. +.....+...++...|+.+.+.-...---.+.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~p---d~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~ 79 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQP---DMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAP 79 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCC---CcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCHHHHHH
Confidence 478888887765554444443321 12221 111123344455678998764332222345567
Q ss_pred HHHhCCcEEEeC
Q 027511 69 AASCGLLTVSTR 80 (222)
Q Consensus 69 Ama~G~PvVa~~ 80 (222)
+++.|+.||.+-
T Consensus 80 ~L~aG~NVV~s~ 91 (324)
T TIGR01921 80 YFAQFANTVDSF 91 (324)
T ss_pred HHHcCCCEEECC
Confidence 899999999885
No 375
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=27.53 E-value=1.9e+02 Score=27.83 Aligned_cols=105 Identities=9% Similarity=-0.002 Sum_probs=63.2
Q ss_pred EEEEEcCCccHHHHHHHHHH---cCCCCcE---EEeCCCChhHHHHHHHhccEEEEcCC--CccccHHHHHHHHhC----
Q 027511 6 RFIVGGDGPKRVRLEEMREK---HSLQDRV---EMLGAVPHAQVRSVLISGHIFLNSSL--TEAFCIAILEAASCG---- 73 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~~---~~l~~~V---~~~g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~ilEAma~G---- 73 (222)
++.|++.|..-....+.++. .++.-.| .++-.++.+-+.++.+..+.+|-.-. .-+||-.+.|.++-.
T Consensus 569 dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~ 648 (701)
T PLN02225 569 DVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLD 648 (701)
T ss_pred CEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCc
Confidence 45666767666555555444 3554444 34556667778888888877654221 378999999998755
Q ss_pred --CcEEEeCCCCccccccCCceE--Ee-CC-CHHHHHHHHHHHHh
Q 027511 74 --LLTVSTRVGGVPEVLPDDMVV--LA-EP-DPGDMVLAIRKAIS 112 (222)
Q Consensus 74 --~PvVa~~~gg~~e~i~~~~~g--~~-~~-~~~~la~~i~~ll~ 112 (222)
+|+ .+.|-..+++.++..- +. .. |++.+++.+.+++.
T Consensus 649 ~~~~v--~~iGipd~F~~~G~~~~ll~~~GLdae~I~~~i~~~l~ 691 (701)
T PLN02225 649 GNIKW--RPIVLPDGYIEEASPREQLALAGLTGHHIAATALSLLG 691 (701)
T ss_pred CCCcE--EEEecCCcCcCCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 343 3444444555544221 11 11 67888888877774
No 376
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=27.42 E-value=84 Score=22.02 Aligned_cols=39 Identities=10% Similarity=-0.075 Sum_probs=24.6
Q ss_pred HHHHHhccEEEEcCCC-ccccHHHHH---HHHhCCcEEEeCCC
Q 027511 44 RSVLISGHIFLNSSLT-EAFCIAILE---AASCGLLTVSTRVG 82 (222)
Q Consensus 44 ~~ll~~adv~v~~s~~-E~~g~~ilE---Ama~G~PvVa~~~g 82 (222)
.+.+++||++|..-.. ..-..+.+| |.+.|+||++-...
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 4577889998754332 233445555 66899999975543
No 377
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=27.41 E-value=3e+02 Score=21.37 Aligned_cols=105 Identities=10% Similarity=0.013 Sum_probs=56.4
Q ss_pred EEEEcCCccH-----HHHHHHHHHcCCCCcEEEe--------CCCCh----hHHHHHH-----------HhccEEEEcCC
Q 027511 7 FIVGGDGPKR-----VRLEEMREKHSLQDRVEML--------GAVPH----AQVRSVL-----------ISGHIFLNSSL 58 (222)
Q Consensus 7 lvi~G~g~~~-----~~l~~~~~~~~l~~~V~~~--------g~v~~----~~~~~ll-----------~~adv~v~~s~ 58 (222)
++++|.|-.. +++.+++++++++--.... |.++. -++-.++ ..+|+.++...
T Consensus 38 lIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~g~~~~DlvlfvG~ 117 (171)
T PRK00945 38 LLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLDGNGNYDLVIFIGV 117 (171)
T ss_pred EEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhcCCCCcCEEEEecC
Confidence 6777865433 4588888888875322222 12221 1222222 47888887766
Q ss_pred CccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHhc
Q 027511 59 TEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 59 ~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~ 113 (222)
.-.+...++-++-.=.|+.+-..+ +.+-++-..-|..=+.+++.+.++++++.
T Consensus 118 ~~~~~~~~l~~lk~f~~~~~~~~~--~~y~~~a~~s~~~~~~~~~~~~l~~li~~ 170 (171)
T PRK00945 118 TYYYASQGLSALKHFSPLKTITID--RYYHPNADMSFPNLSKEEYLEYLDELIDN 170 (171)
T ss_pred CchhHHHHHHHHhhcCCceEEEec--CCcCCCCceecCCCCHHHHHHHHHHHHhh
Confidence 555555666665544553332222 12222222223323679999999988864
No 378
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.35 E-value=1.6e+02 Score=26.97 Aligned_cols=71 Identities=11% Similarity=-0.016 Sum_probs=46.0
Q ss_pred EEEEEcCC-------ccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHH--HhCCcE
Q 027511 6 RFIVGGDG-------PKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAA--SCGLLT 76 (222)
Q Consensus 6 ~lvi~G~g-------~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAm--a~G~Pv 76 (222)
++-|+|.- .+-.+++++.+++|+.-++.+.+.-+-+++.+ +.+|++-|..+. .+|..+-+.| -+|+|.
T Consensus 160 ~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~-l~~A~~nivl~~--~~g~~~A~~Lee~fGiP~ 236 (519)
T PRK02910 160 SVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKR-LPAAWFNVVLYR--EIGESAARYLEREFGQPY 236 (519)
T ss_pred eEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCcEEEEeCH--HHHHHHHHHHHHHhCCcc
Confidence 46666641 34578999999999988888877656666665 344555443332 1455666665 478998
Q ss_pred EEe
Q 027511 77 VST 79 (222)
Q Consensus 77 Va~ 79 (222)
+..
T Consensus 237 i~~ 239 (519)
T PRK02910 237 VKT 239 (519)
T ss_pred ccc
Confidence 863
No 379
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.34 E-value=91 Score=26.87 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=46.0
Q ss_pred ChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcccc---cc-----CCceE-EeCCCHHHHHHHHHH
Q 027511 39 PHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEV---LP-----DDMVV-LAEPDPGDMVLAIRK 109 (222)
Q Consensus 39 ~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~---i~-----~~~~g-~~~~~~~~la~~i~~ 109 (222)
++....+++..+|+.+- .-|.+.=.+.-.|+|||+...-|+.-. .. =+... ++.+++..-.....+
T Consensus 301 sqqsfadiLH~adaalg-----mAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ 375 (412)
T COG4370 301 SQQSFADILHAADAALG-----MAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQE 375 (412)
T ss_pred eHHHHHHHHHHHHHHHH-----hccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHH
Confidence 45777777877777432 224455567789999998765544211 00 01222 344444444444444
Q ss_pred HHhcCC--CCCHHHHHHHHHh
Q 027511 110 AISLLP--KIDPQVMHERMKK 128 (222)
Q Consensus 110 ll~~~~--~~~~~~~~~~~~~ 128 (222)
++.+++ .....++.+++.+
T Consensus 376 ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 376 LLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred HhcChHHHHHHHhcchhhccC
Confidence 887776 3333345555443
No 380
>PRK14851 hypothetical protein; Provisional
Probab=26.93 E-value=4.2e+02 Score=25.40 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCCCcEE-EeCCCChhHHHHHHHhccEEEEcCCCcccc--HHHH-HHHHhCCcEEEeCCCC
Q 027511 17 VRLEEMREKHSLQDRVE-MLGAVPHAQVRSVLISGHIFLNSSLTEAFC--IAIL-EAASCGLLTVSTRVGG 83 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~-~~g~v~~~~~~~ll~~adv~v~~s~~E~~g--~~il-EAma~G~PvVa~~~gg 83 (222)
+.+.+.+.+.+-.-+|. +...++.+++.+++..+|++|....+-.+- ..+. .+...|+|+|.....|
T Consensus 100 ~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 100 AVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred HHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 34455555554333444 457788888899999999999766543332 1233 3567899999766433
No 381
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=26.87 E-value=3.2e+02 Score=23.29 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=16.5
Q ss_pred EEEEcCCccHHHHHHHHHHcCC
Q 027511 7 FIVGGDGPKRVRLEEMREKHSL 28 (222)
Q Consensus 7 lvi~G~g~~~~~l~~~~~~~~l 28 (222)
+-|+|+|.....+.+.++++|.
T Consensus 2 igiiG~gql~~~l~~aa~~lG~ 23 (352)
T TIGR01161 2 VGILGGGQLGRMLALAARPLGI 23 (352)
T ss_pred EEEECCCHHHHHHHHHHHHcCC
Confidence 5678888777777777777776
No 382
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=26.74 E-value=1.9e+02 Score=25.12 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=45.8
Q ss_pred EEEEEcCCc----cHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHH--hCCcEEEe
Q 027511 6 RFIVGGDGP----KRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAAS--CGLLTVST 79 (222)
Q Consensus 6 ~lvi~G~g~----~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma--~G~PvVa~ 79 (222)
.+-|+|..+ +..+++++.++.|+.-+..+.+.-+-+++..+ .+|.+-+..+. .+|..+.|.|. +|+|.+..
T Consensus 154 ~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~-~~A~~nlv~~~--~~g~~~a~~l~~~~g~p~~~~ 230 (399)
T cd00316 154 SVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELREL-GNAKLNLVLCR--ESGLYLARYLEEKYGIPYILI 230 (399)
T ss_pred cEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhh-ccCcEEEEecH--hHHHHHHHHHHHHhCCCeEEe
Confidence 356666332 56889999999999766666554566777664 34444433332 24556666663 89999876
Q ss_pred C
Q 027511 80 R 80 (222)
Q Consensus 80 ~ 80 (222)
.
T Consensus 231 ~ 231 (399)
T cd00316 231 N 231 (399)
T ss_pred C
Confidence 4
No 383
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=26.61 E-value=3.2e+02 Score=24.22 Aligned_cols=75 Identities=12% Similarity=0.011 Sum_probs=43.5
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC------------------ChhHHHHHHHh--ccEEEEcCCCccccH
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV------------------PHAQVRSVLIS--GHIFLNSSLTEAFCI 64 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v------------------~~~~~~~ll~~--adv~v~~s~~E~~g~ 64 (222)
++++-...|...+.+.++++++.- ..|.+...- ..+.+.++... +|+.|+....-.-=.
T Consensus 23 f~v~~Laa~~n~~~L~~q~~~f~p-~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~~l~~~~~~D~vv~AivG~aGL~ 101 (383)
T PRK12464 23 FKVVGLTANYNIELLEQQIKRFQP-RIVSVADKELADTLRTRLSANTSKITYGTDGLIAVATHPGSDLVLSSVVGAAGLL 101 (383)
T ss_pred cEEEEEECCCCHHHHHHHHHHhCC-CEEEEcCHHHHHHHHHhccCCCcEEEECHHHHHHHHcCCCCCEEEEhhhcHhhHH
Confidence 555555567788888888888763 233332211 12344444443 477777655333234
Q ss_pred HHHHHHHhCCcEEEeC
Q 027511 65 AILEAASCGLLTVSTR 80 (222)
Q Consensus 65 ~ilEAma~G~PvVa~~ 80 (222)
..++|+..|+.+--.|
T Consensus 102 pt~~Ai~~gk~iaLAN 117 (383)
T PRK12464 102 PTIEALKAKKDIALAN 117 (383)
T ss_pred HHHHHHHCCCcEEEec
Confidence 5578888888776555
No 384
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=26.11 E-value=3.5e+02 Score=24.23 Aligned_cols=41 Identities=7% Similarity=-0.051 Sum_probs=27.6
Q ss_pred hHHHHHHHhccEEEEcCC---CccccHH----HHHHHHhCCcEEEeCC
Q 027511 41 AQVRSVLISGHIFLNSSL---TEAFCIA----ILEAASCGLLTVSTRV 81 (222)
Q Consensus 41 ~~~~~ll~~adv~v~~s~---~E~~g~~----ilEAma~G~PvVa~~~ 81 (222)
.++.+.++++|++|...- .+.+|.. ++-|..+|+|++....
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 356678999999998543 2333321 3567889999996554
No 385
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=25.94 E-value=3.4e+02 Score=22.42 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeCCCCccccccCCceEEe
Q 027511 18 RLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTRVGGVPEVLPDDMVVLA 96 (222)
Q Consensus 18 ~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~~gg~~e~i~~~~~g~~ 96 (222)
.+++.++++|++- +....+.+++..+..-+|++-.+|..= ....+++ +...|+||+.++.-.
T Consensus 80 ~l~~~~~~~Gl~~---~t~~~d~~~~~~l~~~~d~lkI~s~~~-~n~~LL~~~a~~gkPVilk~G~~------------- 142 (260)
T TIGR01361 80 LLRRAADEHGLPV---VTEVMDPRDVEIVAEYADILQIGARNM-QNFELLKEVGKQGKPVLLKRGMG------------- 142 (260)
T ss_pred HHHHHHHHhCCCE---EEeeCChhhHHHHHhhCCEEEECcccc-cCHHHHHHHhcCCCcEEEeCCCC-------------
Confidence 3444455555431 222223344444444466666666522 2233444 345678887654321
Q ss_pred CCCHHHHHHHHHHHHhc
Q 027511 97 EPDPGDMVLAIRKAISL 113 (222)
Q Consensus 97 ~~~~~~la~~i~~ll~~ 113 (222)
.+++++..+++.+.+.
T Consensus 143 -~t~~e~~~Ave~i~~~ 158 (260)
T TIGR01361 143 -NTIEEWLYAAEYILSS 158 (260)
T ss_pred -CCHHHHHHHHHHHHHc
Confidence 2466777777766653
No 386
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=25.90 E-value=2.9e+02 Score=24.08 Aligned_cols=69 Identities=12% Similarity=0.000 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCCcEE-EeCCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeCCCCcc
Q 027511 17 VRLEEMREKHSLQDRVE-MLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTRVGGVP 85 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~-~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~~gg~~ 85 (222)
+.+.+.+.+..-.-+|. +...+..+.+..++..+|++|.++..-..-..+-+ +...|+|+|.....|..
T Consensus 192 ~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~ 262 (376)
T PRK08762 192 DSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFE 262 (376)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCE
Confidence 33344444433222333 34555666778899999999988774322223333 57889999987665543
No 387
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=25.86 E-value=3.3e+02 Score=22.40 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=39.6
Q ss_pred EEEeCCCChhHHHHHHHhccE--EEEc-CCCccccHHHHHHHHhCCcEEEeCCCCcc
Q 027511 32 VEMLGAVPHAQVRSVLISGHI--FLNS-SLTEAFCIAILEAASCGLLTVSTRVGGVP 85 (222)
Q Consensus 32 V~~~g~v~~~~~~~ll~~adv--~v~~-s~~E~~g~~ilEAma~G~PvVa~~~gg~~ 85 (222)
+...|..+.+.=..++++..+ +|.= |-..++--++--|..+|+|||.-..+..+
T Consensus 175 ia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 175 IAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEP 231 (249)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC
Confidence 556888888888888888554 4432 11237888999999999999987776544
No 388
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=25.39 E-value=2.8e+02 Score=21.18 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcC
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSS 57 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s 57 (222)
+++.+..++.+. .+...+..+-.|..+++++|+++|.+.
T Consensus 122 ~el~~~l~~~~~--~~v~~~~~s~~eqv~~~~~a~viig~h 160 (206)
T PF04577_consen 122 DELLEILKKYGF--EVVDPEDLSFEEQVKLFASAKVIIGPH 160 (206)
T ss_pred HHHHHHHhhCCe--EEEeCCCCCHHHHHHHhcCCCEEEecC
Confidence 444444444443 233345555556666666666666543
No 389
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=25.35 E-value=3.6e+02 Score=21.71 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=58.6
Q ss_pred EEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCC----------------hhHHHHHHHhccEEEEcCCCccccHHHHHH
Q 027511 6 RFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVP----------------HAQVRSVLISGHIFLNSSLTEAFCIAILEA 69 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~----------------~~~~~~ll~~adv~v~~s~~E~~g~~ilEA 69 (222)
...|+|.|..-.-+-....+.+. .|.+-++-. ..+..+-...+|+.+.+--++...-++-|.
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l 80 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL 80 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence 35667777666666655555553 244432321 223456677799999988888888776555
Q ss_pred HH-h-CCcEEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHhc
Q 027511 70 AS-C-GLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 70 ma-~-G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~ 113 (222)
-. . |+-||.+.++-.. ...... .+..|+..+-++.+.+++..
T Consensus 81 ~~~~~~KIvID~tnp~~~-~~~~~~-~~~~~~~~saae~va~~lp~ 124 (211)
T COG2085 81 RDALGGKIVIDATNPIEV-NGEPGD-LYLVPSEGSAAEIVAKLLPG 124 (211)
T ss_pred HHHhCCeEEEecCCCccc-cCCccc-cccCCCCCcHHHHHHHHCCC
Confidence 52 4 6888876665222 112222 23334445555555555544
No 390
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=25.27 E-value=3.4e+02 Score=21.40 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=32.0
Q ss_pred HhccEEEEcCCCccc------cHHHHHHHHhCCcEEEeCCCC-ccccccCCceEEeCC
Q 027511 48 ISGHIFLNSSLTEAF------CIAILEAASCGLLTVSTRVGG-VPEVLPDDMVVLAEP 98 (222)
Q Consensus 48 ~~adv~v~~s~~E~~------g~~ilEAma~G~PvVa~~~gg-~~e~i~~~~~g~~~~ 98 (222)
+.+|++++|+....+ .....-|+-.|++++.++..| ..+..-.|..++..|
T Consensus 158 ~g~dli~~ps~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~G~S~i~~p 215 (253)
T cd07197 158 KGADIILVPAAWPTARREHWELLLRARAIENGVYVVAANRVGEEGGLEFAGGSMIVDP 215 (253)
T ss_pred CCCcEEEECCcCCCcchHHHHHHHHHHHHHhCCeEEEecCCCCCCCccccceeEEECC
Confidence 458999999886543 245567778899999777643 223333334444444
No 391
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=25.14 E-value=3.4e+02 Score=21.26 Aligned_cols=69 Identities=6% Similarity=0.012 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCCcEEEeC-CCC--hhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeCCCCccc
Q 027511 18 RLEEMREKHSLQDRVEMLG-AVP--HAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 18 ~l~~~~~~~~l~~~V~~~g-~v~--~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~~gg~~e 86 (222)
.+.+..++++-.-+|.... .+. .++..+++..+|+.+.+......-..+-+ +...++|+|.+...|+..
T Consensus 79 ~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G 151 (198)
T cd01485 79 ASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIG 151 (198)
T ss_pred HHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 3444455554333444432 332 45678889999999987554222222222 356789999887766543
No 392
>COG0158 Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=25.12 E-value=2e+02 Score=24.62 Aligned_cols=44 Identities=34% Similarity=0.433 Sum_probs=37.6
Q ss_pred EEEeCCCChhHHHHHHHhccEEEEcCC-----------CccccHHHHHHHHhCCcE
Q 027511 32 VEMLGAVPHAQVRSVLISGHIFLNSSL-----------TEAFCIAILEAASCGLLT 76 (222)
Q Consensus 32 V~~~g~v~~~~~~~ll~~adv~v~~s~-----------~E~~g~~ilEAma~G~Pv 76 (222)
.++.|++ -.|+++.|-..-+|++|+. +|++|++.+==-|-|+..
T Consensus 233 ~RyigSm-VADvHRiL~~GGiF~YP~~~~~P~GKLRllYEanPmAflvEqAGG~At 287 (326)
T COG0158 233 MRYIGSM-VADVHRILLKGGIFLYPSDKRAPNGKLRLLYEANPMAFLVEQAGGKAT 287 (326)
T ss_pred hhhHHHH-HHHHHHHHHcCceEeccccCCCCCCceeeeeecchHHHHHHHhcCccc
Confidence 7788887 5889999999999999953 899999998878888765
No 393
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=25.12 E-value=5.1e+02 Score=24.02 Aligned_cols=101 Identities=8% Similarity=0.025 Sum_probs=54.2
Q ss_pred EEEEcCCc--cHHHHHHHHHHcCCCCc-------------EEEe---CCCChhHHHHHHHhccEEEEcCCCccccHHHHH
Q 027511 7 FIVGGDGP--KRVRLEEMREKHSLQDR-------------VEML---GAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE 68 (222)
Q Consensus 7 lvi~G~g~--~~~~l~~~~~~~~l~~~-------------V~~~---g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE 68 (222)
++++|.|- ..+++.+++++++.+-- -.++ |...+......+.+||++|.--..-.++
T Consensus 205 vii~G~g~~~a~~~l~~lae~~g~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~----- 279 (578)
T PRK06546 205 TLFAGAGVRGAHAEVLALAEKIKAPVGHSLRGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFPYD----- 279 (578)
T ss_pred EEEECcchHHHHHHHHHHHHHhCcceEECcccccCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCChh-----
Confidence 77888765 35788899999877421 1122 2223355678899999977533211111
Q ss_pred HHHhCCcEEEeCCCCccccccCCc-eEEeCCCHHHHHHHHHHHHhc
Q 027511 69 AASCGLLTVSTRVGGVPEVLPDDM-VVLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 69 Ama~G~PvVa~~~gg~~e~i~~~~-~g~~~~~~~~la~~i~~ll~~ 113 (222)
.+....++|.-|.... ++-.... ..-...|+..+.+.+.+.+..
T Consensus 280 ~~~~~~~~I~vd~d~~-~~~~~~~~~~~i~~D~~~~l~~L~~~L~~ 324 (578)
T PRK06546 280 QFLPDVRTAQVDIDPE-HLGRRTRVDLAVHGDVAETIRALLPLVKE 324 (578)
T ss_pred hcCCCCcEEEEeCCHH-HhCCCCCCCeEEEcCHHHHHHHHHHhhcc
Confidence 1223345665443221 2211111 122345777777777776653
No 394
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=24.96 E-value=1.2e+02 Score=22.50 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=62.0
Q ss_pred EEEEEcC--CccHHHHHHHHHHcCCCCcEEEeCCCChh------------------------------HHHHHHHhccEE
Q 027511 6 RFIVGGD--GPKRVRLEEMREKHSLQDRVEMLGAVPHA------------------------------QVRSVLISGHIF 53 (222)
Q Consensus 6 ~lvi~G~--g~~~~~l~~~~~~~~l~~~V~~~g~v~~~------------------------------~~~~ll~~adv~ 53 (222)
.+++.|. .+-|+++++-+++.+|+ |.|.+.+.+. .-+.++..||+.
T Consensus 2 ~VYLsGEIHtdWRe~I~~ga~~~~L~--v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvv 79 (144)
T TIGR03646 2 TVYLAGEIHTDWREEIKEGAKSKNLP--IVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVV 79 (144)
T ss_pred eEEEcCcccchHHHHHHHHHHHcCCC--eEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEE
Confidence 4667773 46789999999988885 7777666431 124567888887
Q ss_pred EEc--CCCccccHHHH---HHHHhCCcEEEeCCCCccccccCC--ceEEeCCCHHHHHHHHHHHH
Q 027511 54 LNS--SLTEAFCIAIL---EAASCGLLTVSTRVGGVPEVLPDD--MVVLAEPDPGDMVLAIRKAI 111 (222)
Q Consensus 54 v~~--s~~E~~g~~il---EAma~G~PvVa~~~gg~~e~i~~~--~~g~~~~~~~~la~~i~~ll 111 (222)
|.- -.+.-+. +.+ =|.|.|+|.|.-.-.....-+.+- ....+..+|++.++.+..++
T Consensus 80 VvrFGekYKQWN-aAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 80 IALFGEKYKQWN-AAFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred EEEechHHHHHH-HHhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 642 2222222 222 356899999986654433333221 12234457777777777654
No 395
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=24.79 E-value=3.7e+02 Score=21.59 Aligned_cols=75 Identities=9% Similarity=0.217 Sum_probs=41.3
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCC-CcEEEeCCC-----Ch---------------------hHHHHHHHhccEEEE
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQ-DRVEMLGAV-----PH---------------------AQVRSVLISGHIFLN 55 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~-~~V~~~g~v-----~~---------------------~~~~~ll~~adv~v~ 55 (222)
.+-+++|.|.|..-..+-..+.+.|.. .+|.+...- .. .++.+.+..+|++|.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIg 103 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIG 103 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEe
Confidence 355778888776655555555555553 134443332 00 123345566788888
Q ss_pred cCCCccccHHHHHHHHhCCcEEE
Q 027511 56 SSLTEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 56 ~s~~E~~g~~ilEAma~G~PvVa 78 (222)
++..-.|+-..++.|+ ..|+|.
T Consensus 104 aT~~G~~~~~~l~~m~-~~~ivf 125 (226)
T cd05311 104 VSRPGVVKKEMIKKMA-KDPIVF 125 (226)
T ss_pred CCCCCCCCHHHHHhhC-CCCEEE
Confidence 7764445556677775 345554
No 396
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=24.75 E-value=4.9e+02 Score=22.99 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=17.4
Q ss_pred EEEEEcCCccHHHHHHHHHHcCC
Q 027511 6 RFIVGGDGPKRVRLEEMREKHSL 28 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~~~~l 28 (222)
+++|+|.|.....+.+.++++|.
T Consensus 4 ~ililg~g~~~~~~~~~a~~lG~ 26 (450)
T PRK06111 4 KVLIANRGEIAVRIIRTCQKLGI 26 (450)
T ss_pred eEEEECCcHHHHHHHHHHHHcCC
Confidence 67888888777777777777776
No 397
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=24.65 E-value=2.7e+02 Score=23.07 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=27.9
Q ss_pred HHhccEEEEcCCC-------------------------ccccHHHHHHHHhCCcEEEeCCCCc
Q 027511 47 LISGHIFLNSSLT-------------------------EAFCIAILEAASCGLLTVSTRVGGV 84 (222)
Q Consensus 47 l~~adv~v~~s~~-------------------------E~~g~~ilEAma~G~PvVa~~~gg~ 84 (222)
.+.++++++|+.+ +++-+...-|+-.|++||+++..|.
T Consensus 150 ~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv~aN~~g~ 212 (279)
T cd07579 150 LRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFAFANVPDP 212 (279)
T ss_pred HCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEEEeeccCC
Confidence 4558999999863 1333456788999999999886554
No 398
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=24.60 E-value=3.7e+02 Score=25.77 Aligned_cols=107 Identities=12% Similarity=0.079 Sum_probs=59.8
Q ss_pred EEEEEcCCccHHHHHHHHHH---cCCCCcEEE---eCCCChhHHHHHHHhccEEEEcC--CCccccHHHHHHHHhC-C--
Q 027511 6 RFIVGGDGPKRVRLEEMREK---HSLQDRVEM---LGAVPHAQVRSVLISGHIFLNSS--LTEAFCIAILEAASCG-L-- 74 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~~---~~l~~~V~~---~g~v~~~~~~~ll~~adv~v~~s--~~E~~g~~ilEAma~G-~-- 74 (222)
++.|++.|..-....+.++. .++.-.|.- +-.++.+-+..+.+...++|.-- ..-+||-.+.|.++-. .
T Consensus 545 dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~ 624 (677)
T PLN02582 545 RVALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLD 624 (677)
T ss_pred CEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCcc
Confidence 35666666666555555443 355545543 44445566777777777655321 2367888888888663 1
Q ss_pred -cEEEeCCCCccccccCCceE-Ee--CC-CHHHHHHHHHHHHh
Q 027511 75 -LTVSTRVGGVPEVLPDDMVV-LA--EP-DPGDMVLAIRKAIS 112 (222)
Q Consensus 75 -PvVa~~~gg~~e~i~~~~~g-~~--~~-~~~~la~~i~~ll~ 112 (222)
++-..+.|...+++..+..- +. .. |++.+++++.+++.
T Consensus 625 ~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~~e~I~~~i~~~l~ 667 (677)
T PLN02582 625 GKLKWRPLVLPDRYIDHGAPADQLAEAGLTPSHIAATVLNVLG 667 (677)
T ss_pred CCceeEEecCCCcccCcCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 12223445555555544211 11 11 67788888877764
No 399
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=24.54 E-value=1.1e+02 Score=23.02 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=30.4
Q ss_pred eEEEEEcCCccHHHHHHHHHH-cCCCCcEEEeCCCChhHHHH
Q 027511 5 VRFIVGGDGPKRVRLEEMREK-HSLQDRVEMLGAVPHAQVRS 45 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~-~~l~~~V~~~g~v~~~~~~~ 45 (222)
+.++|++-|.....+.+.++- +|.+.+|..+...+.++..+
T Consensus 2 ~~iii~tHG~~A~~l~~s~emi~G~q~nv~~v~~~~~~~~~~ 43 (143)
T COG2893 2 IGIIIATHGRFAEGLLNSLEMILGEQENVEAVDFVPGEDSED 43 (143)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHhCcHhceEEEEeecCCChHH
Confidence 468899988888877776654 58888999888887644443
No 400
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.28 E-value=1.8e+02 Score=25.99 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=40.1
Q ss_pred cEEEEcCCCcc------ccHHHHHHHHhCCcEEEeCCCCccc------cccCCceEEeCC--CHHHHHHHHHHHHhc
Q 027511 51 HIFLNSSLTEA------FCIAILEAASCGLLTVSTRVGGVPE------VLPDDMVVLAEP--DPGDMVLAIRKAISL 113 (222)
Q Consensus 51 dv~v~~s~~E~------~g~~ilEAma~G~PvVa~~~gg~~e------~i~~~~~g~~~~--~~~~la~~i~~ll~~ 113 (222)
|+++.|.+.+. ....+.+.+....|+|+++-++..+ +-..|..|+... +++++.+.+.++-+.
T Consensus 14 Dvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l~~eI~~vk~~ 90 (404)
T PRK06843 14 DVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKTY 90 (404)
T ss_pred ceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHHHHhh
Confidence 55666655332 3345668888899999977765443 223455555444 688888888776654
No 401
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=24.26 E-value=3.9e+02 Score=23.49 Aligned_cols=70 Identities=9% Similarity=-0.089 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCCcEE-EeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHH-HHhCCcEEEeCCCCccc
Q 027511 17 VRLEEMREKHSLQDRVE-MLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEA-ASCGLLTVSTRVGGVPE 86 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~-~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEA-ma~G~PvVa~~~gg~~e 86 (222)
+...+.++++.-.-+|. +...++.+...+++..+|++|.+...-..-..+-++ ...|+|.|.....|+..
T Consensus 99 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G 170 (392)
T PRK07878 99 QSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEG 170 (392)
T ss_pred HHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 33344445444333443 345677777888999999999886543323333333 56799999765544433
No 402
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=24.18 E-value=4e+02 Score=21.75 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=11.3
Q ss_pred ccEEEEcCCCccccHHHHHHHHhCCcEEE
Q 027511 50 GHIFLNSSLTEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 50 adv~v~~s~~E~~g~~ilEAma~G~PvVa 78 (222)
+|+||-.-..++ ..++|...|+.+|.
T Consensus 189 aD~~ITGd~k~h---~~~~A~~~gi~li~ 214 (249)
T TIGR00486 189 VDAYITGDLSHH---TAHLARELGLNVID 214 (249)
T ss_pred CCEEEecCCchH---HHHHHHHCCCEEEE
Confidence 455443333333 23444555554443
No 403
>cd01982 Chlide_reductase_Z Chlide_reductase_Z : Z subunit of chlorophyllide (chlide) reductase (BchZ). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=24.16 E-value=2.4e+02 Score=25.21 Aligned_cols=71 Identities=7% Similarity=-0.053 Sum_probs=46.1
Q ss_pred EEEEEc-------CCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEE
Q 027511 6 RFIVGG-------DGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 6 ~lvi~G-------~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa 78 (222)
++-|+| ...+..+++++.+..|+.-+..|.+.-+-+++.++-+ |++-+..+. .++..+-| .+|+|.+.
T Consensus 157 ~VNIIG~~~g~~~~~gDl~ElkrLLe~~Gl~vn~v~~~gt~l~eI~~l~~-A~lniv~~~--~~g~~L~e--~~giPy~~ 231 (412)
T cd01982 157 TVNIIGPSYGCFNSPSDLAEVKRLVTGIGAEVNHVYPFESHLAEIPKLKN-AAVNVVMYR--EFGRGLAE--DLGRPYLY 231 (412)
T ss_pred eEEEECCCcCcCCCHHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHhhcc-CCEEEEeCH--HHHHHHHH--HHCcCeEe
Confidence 466666 1234588999999999988888877777788877655 555333221 24544433 47999875
Q ss_pred eCC
Q 027511 79 TRV 81 (222)
Q Consensus 79 ~~~ 81 (222)
...
T Consensus 232 ~P~ 234 (412)
T cd01982 232 APF 234 (412)
T ss_pred cCc
Confidence 443
No 404
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=24.15 E-value=1.7e+02 Score=20.10 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=22.3
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCC
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQ 29 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~ 29 (222)
.++++.++|.|+.|.-+..++......
T Consensus 23 ~~~~iLl~G~gD~Rhvl~Tl~~~~~~~ 49 (100)
T PF14737_consen 23 EDLNILLLGCGDLRHVLKTLASLPRSY 49 (100)
T ss_pred CCceEEEecCccHHHHHHHHHhcccCc
Confidence 578999999999999999888766544
No 405
>PRK06270 homoserine dehydrogenase; Provisional
Probab=24.13 E-value=3.4e+02 Score=23.31 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=27.3
Q ss_pred HHHHHHH--hccEEEEcCCC-----ccccHHHHHHHHhCCcEEEeCCCC
Q 027511 42 QVRSVLI--SGHIFLNSSLT-----EAFCIAILEAASCGLLTVSTRVGG 83 (222)
Q Consensus 42 ~~~~ll~--~adv~v~~s~~-----E~~g~~ilEAma~G~PvVa~~~gg 83 (222)
++.+++. ..|+++-++-. |..--.+.+|+..|++||+.+-+.
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~p 128 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGP 128 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHH
Confidence 5566664 46888764432 222334589999999999987543
No 406
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.10 E-value=3.7e+02 Score=23.85 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHH--HhCCcEEEeCC--CCccccccC
Q 027511 15 KRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAA--SCGLLTVSTRV--GGVPEVLPD 90 (222)
Q Consensus 15 ~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAm--a~G~PvVa~~~--gg~~e~i~~ 90 (222)
+..+++++.++.|+.-++.|.+.-+-+++.+ +.+|.+-+..+.. .+..+.+.| .+|+|.+..+. -|+.
T Consensus 174 d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~-~~~A~~niv~~~~--~g~~~a~~L~~~~giP~i~~~~~P~G~~----- 245 (427)
T cd01971 174 DLEEIKRVLEGIGLKVNILFGPESNGEELRS-IPKAQFNLVLSPW--VGLEFAQHLEEKYGQPYIHSPTLPIGAK----- 245 (427)
T ss_pred cHHHHHHHHHHCCCeEEEEECCCCCHHHHHh-cccCcEEEEEcHh--hHHHHHHHHHHHhCCceEecCCCccCHH-----
Confidence 4588999999999987777765544555554 3344543333322 245555555 57999887531 1111
Q ss_pred CceEEeCCCHHHHHHHHHHHHhc
Q 027511 91 DMVVLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 91 ~~~g~~~~~~~~la~~i~~ll~~ 113 (222)
+.+.+.+.|.+++..
T Consensus 246 --------~t~~~l~~i~~~~g~ 260 (427)
T cd01971 246 --------ATAEFLRQVAKFAGI 260 (427)
T ss_pred --------HHHHHHHHHHHHhCC
Confidence 346666666666654
No 407
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=24.08 E-value=2.2e+02 Score=18.66 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=41.6
Q ss_pred CcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEe
Q 027511 30 DRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLA 96 (222)
Q Consensus 30 ~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~ 96 (222)
+-|.+...+..+++. +....=..+.+......+-..+-|-++|+|+|..- ++..+.+.++....+
T Consensus 11 ~~IlV~~~~~p~~~~-~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~-~~~~~~i~~g~~v~l 75 (80)
T PF00391_consen 11 GVILVAEELTPSDLA-LDLQRVAGIVTEEGGPTSHAAILARELGIPAIVGV-GDATEAIKDGDWVTL 75 (80)
T ss_dssp TEEEEESS--TTCHH-SHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEEST-TTHHHHSCTTEEEEE
T ss_pred CEEEEECCCCHHHHh-cchhheEEEEEEcCCccchHHHHHHHcCCCEEEee-ccHhhccCCCCEEEE
Confidence 347778888777777 44444445555555666778889999999999854 345566666655443
No 408
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=24.01 E-value=3.4e+02 Score=20.93 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=61.9
Q ss_pred CceEEEEEcCCccH-HHHHHHHHHcCCCCcEEEeCCC-ChhHHHHHHHh--ccEEEEcCCC-c---cccHHHHHHHH---
Q 027511 3 VKVRFIVGGDGPKR-VRLEEMREKHSLQDRVEMLGAV-PHAQVRSVLIS--GHIFLNSSLT-E---AFCIAILEAAS--- 71 (222)
Q Consensus 3 p~~~lvi~G~g~~~-~~l~~~~~~~~l~~~V~~~g~v-~~~~~~~ll~~--adv~v~~s~~-E---~~g~~ilEAma--- 71 (222)
++++++|+.+.+.. ..++...+..+ .+...+.. +.++....+.. .|+++.-... . ..|..+++.+.
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~~---~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~ 78 (216)
T PRK10840 2 NNMNVIIADDHPIVLFGIRKSLEQIE---WVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHF 78 (216)
T ss_pred CceEEEEECCcHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHC
Confidence 35788888876543 45666665433 22222221 24555555543 6887764432 2 25777777664
Q ss_pred hCCcEEE-eCCCC---ccccccCCceEEeCC--CHHHHHHHHHHHHhcC
Q 027511 72 CGLLTVS-TRVGG---VPEVLPDDMVVLAEP--DPGDMVLAIRKAISLL 114 (222)
Q Consensus 72 ~G~PvVa-~~~gg---~~e~i~~~~~g~~~~--~~~~la~~i~~ll~~~ 114 (222)
-++|+|. +.... ....+..|..++... +++++.+++..+....
T Consensus 79 ~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~ 127 (216)
T PRK10840 79 PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCC
Confidence 3456664 33322 223455666666443 7899999999887653
No 409
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=24.00 E-value=3.5e+02 Score=23.33 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCCcEEE-eCCCChhHHHHHHHhccEEEEcCCCccccHHHHH-HHHhCCcEEEeCC
Q 027511 18 RLEEMREKHSLQDRVEM-LGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILE-AASCGLLTVSTRV 81 (222)
Q Consensus 18 ~l~~~~~~~~l~~~V~~-~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilE-Ama~G~PvVa~~~ 81 (222)
...+.+++++-.-+|.. ...++.+....++..+|++|.++..-..-..+-+ +...|+|.|....
T Consensus 84 aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~ 149 (339)
T PRK07688 84 AAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGAC 149 (339)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence 33344444432222333 3456667788899999999988764333333434 4578999996443
No 410
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.62 E-value=1.5e+02 Score=22.43 Aligned_cols=85 Identities=20% Similarity=0.165 Sum_probs=57.5
Q ss_pred EEEEcC-CccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCcc
Q 027511 7 FIVGGD-GPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVP 85 (222)
Q Consensus 7 lvi~G~-g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~ 85 (222)
+.+-++ =|-++++.+.+++++++ |+|.-..++... --......+..+..+.--.-++|-.--|=-||+.|.|=..
T Consensus 4 I~VDADACPVk~~i~r~A~r~~~~--v~~Van~~~~~~--~~~~i~~v~V~~g~DaaD~~Iv~~a~~gDlVVT~Di~LA~ 79 (150)
T COG1671 4 IWVDADACPVKDEIYRVAERMGLK--VTFVANFPHRVP--PSPEIRTVVVDAGFDAADDWIVNLAEKGDLVVTADIPLAS 79 (150)
T ss_pred EEEeCCCCchHHHHHHHHHHhCCe--EEEEeCCCccCC--CCCceeEEEecCCcchHHHHHHHhCCCCCEEEECchHHHH
Confidence 344443 36788999999999985 777666443211 1112234455555677778889988999999999998777
Q ss_pred ccccCCceEE
Q 027511 86 EVLPDDMVVL 95 (222)
Q Consensus 86 e~i~~~~~g~ 95 (222)
.++..+..-+
T Consensus 80 ~ll~kg~~v~ 89 (150)
T COG1671 80 LLLDKGAAVL 89 (150)
T ss_pred HHHhcCCEEE
Confidence 7777775543
No 411
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=23.60 E-value=2.6e+02 Score=19.68 Aligned_cols=32 Identities=9% Similarity=-0.021 Sum_probs=20.2
Q ss_pred HHhccEEEEcCCCccccHHHHHHHHhCCcEEE
Q 027511 47 LISGHIFLNSSLTEAFCIAILEAASCGLLTVS 78 (222)
Q Consensus 47 l~~adv~v~~s~~E~~g~~ilEAma~G~PvVa 78 (222)
+..+|+.+++.-.+...-..-.+...|+.||-
T Consensus 64 ~~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD 95 (121)
T PF01118_consen 64 LSDVDVVFLALPHGASKELAPKLLKAGIKVID 95 (121)
T ss_dssp HTTESEEEE-SCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhcCCEEEecCchhHHHHHHHHHhhCCcEEEe
Confidence 47888887776555444444455688887763
No 412
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=23.45 E-value=5.6e+02 Score=23.78 Aligned_cols=105 Identities=11% Similarity=0.149 Sum_probs=54.1
Q ss_pred EEEEcCCc----cHHHHHHHHHHcCCCC-------------cEEEeC---CCChhHHHHHHHhccEEEEc--CCCccccH
Q 027511 7 FIVGGDGP----KRVRLEEMREKHSLQD-------------RVEMLG---AVPHAQVRSVLISGHIFLNS--SLTEAFCI 64 (222)
Q Consensus 7 lvi~G~g~----~~~~l~~~~~~~~l~~-------------~V~~~g---~v~~~~~~~ll~~adv~v~~--s~~E~~g~ 64 (222)
++++|.|- ..+++.+++++++.+- +=.++| ..........+..||++|.. +..+.. .
T Consensus 221 vil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~-~ 299 (585)
T CHL00099 221 LLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRV-T 299 (585)
T ss_pred EEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCcccc-c
Confidence 67788664 3578899999998751 111333 33445567788999997753 232211 1
Q ss_pred HHHHHHHhCCcEEEeCCCCccccccCC-ceEEeCCCHHHHHHHHHHHHhc
Q 027511 65 AILEAASCGLLTVSTRVGGVPEVLPDD-MVVLAEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 65 ~ilEAma~G~PvVa~~~gg~~e~i~~~-~~g~~~~~~~~la~~i~~ll~~ 113 (222)
.-...+.-+..+|.-+.... ++-... ...-...|+..+.++|...+..
T Consensus 300 ~~~~~~~~~~~~i~id~d~~-~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 348 (585)
T CHL00099 300 GKLDEFACNAQVIHIDIDPA-EIGKNRIPQVAIVGDVKKVLQELLELLKN 348 (585)
T ss_pred CCHhHcCCCCeEEEEECCHH-HhCCCCCCCeEEecCHHHHHHHHHHHhhh
Confidence 01112223344554333221 111111 1123445777777777776653
No 413
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=23.45 E-value=4e+02 Score=23.95 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=47.3
Q ss_pred CceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCCh------------hHHHHHHHhccEEEEcCCC-ccccHHHHHH
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPH------------AQVRSVLISGHIFLNSSLT-EAFCIAILEA 69 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~------------~~~~~ll~~adv~v~~s~~-E~~g~~ilEA 69 (222)
++-+++|+|.|+.-..+...++.+|. +|.....-+. ..+.+++..+|+++.++-. ..+....++.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG~~~vI~~~~~~~ 288 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATGNKDVITAEHMEA 288 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCCCHHHHHHHHHhc
Confidence 34578999999888888888887775 4666542211 1245667788998876533 2344455666
Q ss_pred HHhCCcEEE
Q 027511 70 ASCGLLTVS 78 (222)
Q Consensus 70 ma~G~PvVa 78 (222)
|.-|.-++.
T Consensus 289 mK~GailiN 297 (425)
T PRK05476 289 MKDGAILAN 297 (425)
T ss_pred CCCCCEEEE
Confidence 667765553
No 414
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=23.43 E-value=2.9e+02 Score=22.17 Aligned_cols=45 Identities=9% Similarity=-0.114 Sum_probs=28.6
Q ss_pred hHHHHHHHhccEEEEcCCCcccc------HHHHHHHHhCCcEEEeCCCCcc
Q 027511 41 AQVRSVLISGHIFLNSSLTEAFC------IAILEAASCGLLTVSTRVGGVP 85 (222)
Q Consensus 41 ~~~~~ll~~adv~v~~s~~E~~g------~~ilEAma~G~PvVa~~~gg~~ 85 (222)
.+....+..+|++++|+.+-... ....-|+..|++||+++..|..
T Consensus 146 pe~~r~~~~a~lil~~s~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~ 196 (252)
T cd07575 146 PVWSRNTNDYDLLLYVANWPAPRRAAWDTLLKARAIENQAYVIGVNRVGTD 196 (252)
T ss_pred hHHHHhhcCCCEEEEeCCCCCCchHHHHHHhHHHHhhccceEEEecccccC
Confidence 44555566699999988632111 1223467789999987765543
No 415
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=23.18 E-value=2.2e+02 Score=20.40 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=27.8
Q ss_pred ceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEE
Q 027511 4 KVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLN 55 (222)
Q Consensus 4 ~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~ 55 (222)
+.-+++.|+++....++.+. +.|. +|.+.+. +..--..+.+.||-|+.
T Consensus 97 d~ivLvSgD~Df~~~v~~l~-~~g~--~V~v~~~-~~~~s~~L~~~ad~f~~ 144 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLR-ERGK--RVIVVGA-EDSASEALRSAADEFIS 144 (146)
T ss_dssp SEEEEE---GGGHHHHHHHH-HH----EEEEEE--GGGS-HHHHHHSSEEEE
T ss_pred CEEEEEECcHHHHHHHHHHH-HcCC--EEEEEEe-CCCCCHHHHHhcCEEEe
Confidence 55677788988777777766 4453 5777773 33444667777887764
No 416
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=23.17 E-value=4.3e+02 Score=21.73 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=49.3
Q ss_pred cEEEeCCCChhHHHHHHHhccEEEEcCC---CccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHHHHHHH
Q 027511 31 RVEMLGAVPHAQVRSVLISGHIFLNSSL---TEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAI 107 (222)
Q Consensus 31 ~V~~~g~v~~~~~~~ll~~adv~v~~s~---~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i 107 (222)
-+.+.|..+.+.=..++++.++-+.-++ ..++.-++--|..+|+|||.-..+..+. +. -...+.+++.+.+
T Consensus 170 iiam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~----~~--~~~~~~~e~~~~l 243 (248)
T PRK08057 170 IIALRGPFSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPALPY----AD--REFEDVAELVAWL 243 (248)
T ss_pred EEEeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCC----CC--cccCCHHHHHHHH
Confidence 3556888888888889988665333222 2257788888899999999877764321 10 1234677777777
Q ss_pred HHHH
Q 027511 108 RKAI 111 (222)
Q Consensus 108 ~~ll 111 (222)
.+++
T Consensus 244 ~~~~ 247 (248)
T PRK08057 244 RHLL 247 (248)
T ss_pred HHhh
Confidence 6554
No 417
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=23.09 E-value=5e+02 Score=22.50 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=39.3
Q ss_pred CceEEEEEcCCccHHHHHHHHHHc---CCCC---cEEEeCCCChhHHHHHHHhccEEEEcCCCc
Q 027511 3 VKVRFIVGGDGPKRVRLEEMREKH---SLQD---RVEMLGAVPHAQVRSVLISGHIFLNSSLTE 60 (222)
Q Consensus 3 p~~~lvi~G~g~~~~~l~~~~~~~---~l~~---~V~~~g~v~~~~~~~ll~~adv~v~~s~~E 60 (222)
++..+.|++.|......++.++.+ |+.- ++..+-.+|.+.+.+++++++-++..-...
T Consensus 245 ~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n~ 308 (352)
T PRK07119 245 EDAELVLVAYGTSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMSM 308 (352)
T ss_pred CCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCCc
Confidence 456788888887776666666553 3322 233456678888999999998776655553
No 418
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=23.06 E-value=4.1e+02 Score=21.46 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=26.5
Q ss_pred HHHhccEEEEcCCCccc-------------cHHHHHHHHhCCcEEEeCCCCc
Q 027511 46 VLISGHIFLNSSLTEAF-------------CIAILEAASCGLLTVSTRVGGV 84 (222)
Q Consensus 46 ll~~adv~v~~s~~E~~-------------g~~ilEAma~G~PvVa~~~gg~ 84 (222)
..+.+|++++|+....+ .....-|+-.|++||.++..|.
T Consensus 156 ~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~ 207 (269)
T cd07586 156 ALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGV 207 (269)
T ss_pred HHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecC
Confidence 34668999998874221 2344567888999997776543
No 419
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=23.03 E-value=3.1e+02 Score=23.52 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=56.3
Q ss_pred EEEEEc-CCccHHHHHHHHHHcCCCCcEEEeCCC---ChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEE--Ee
Q 027511 6 RFIVGG-DGPKRVRLEEMREKHSLQDRVEMLGAV---PHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTV--ST 79 (222)
Q Consensus 6 ~lvi~G-~g~~~~~l~~~~~~~~l~~~V~~~g~v---~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvV--a~ 79 (222)
++-|+| .|-.-.++.++...+..-+ +..+..- ...+..+++..+|+.++..-.+...-.+-++...|+.|| ++
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~e-l~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSa 81 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIE-LLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLVDNPNTCIIDAST 81 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeE-EEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence 455666 6666678888877663221 3333221 112445677789987765544432222233446799888 22
Q ss_pred C-------CCCccccc---cC---CceEEeCC--CHHHHHHHHHHHHh
Q 027511 80 R-------VGGVPEVL---PD---DMVVLAEP--DPGDMVLAIRKAIS 112 (222)
Q Consensus 80 ~-------~gg~~e~i---~~---~~~g~~~~--~~~~la~~i~~ll~ 112 (222)
+ .-|++|+- .+ ....+..| .+-.+.-++.-+++
T Consensus 82 dfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~aTa~~LaL~PL~~ 129 (310)
T TIGR01851 82 AYRTADDWAYGFPELAPGQREKIRNSKRIANPGCYPTGFIALMRPLVE 129 (310)
T ss_pred HHhCCCCCeEEccccCHHHHHhhccCCEEECCCCHHHHHHHHHHHHHH
Confidence 2 13677762 21 12345555 34555555555554
No 420
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=23.00 E-value=3.3e+02 Score=21.17 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=42.7
Q ss_pred EEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCc-----------cccHHHHHHHHhCCc
Q 027511 7 FIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTE-----------AFCIAILEAASCGLL 75 (222)
Q Consensus 7 lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E-----------~~g~~ilEAma~G~P 75 (222)
++..|+......++.+++..+. .+.+..... + ...+|.++.|.-.. .+--.+.++...|+|
T Consensus 3 ~~~y~~~gN~~~l~~~~~~~G~--~~~~~~~~~--~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~p 74 (194)
T cd01750 3 VIRYPDISNFTDLDPLAREPGV--DVRYVEVPE--G----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGP 74 (194)
T ss_pred eecCCCccCHHHHHHHHhcCCc--eEEEEeCCC--C----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCc
Confidence 4455655566778888877765 366665542 2 46779988887632 223346677778999
Q ss_pred EEEeC
Q 027511 76 TVSTR 80 (222)
Q Consensus 76 vVa~~ 80 (222)
|++.=
T Consensus 75 vlgiC 79 (194)
T cd01750 75 VLGIC 79 (194)
T ss_pred EEEEC
Confidence 98743
No 421
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=22.80 E-value=3.4e+02 Score=22.31 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=39.3
Q ss_pred EEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCC--CccccHHHHHHH---HhCCcEEEeC
Q 027511 8 IVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSL--TEAFCIAILEAA---SCGLLTVSTR 80 (222)
Q Consensus 8 vi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~--~E~~g~~ilEAm---a~G~PvVa~~ 80 (222)
++.|.| ...+.+. .+.+. .+.++|.+++.+........--++.+.+ +|.+|...+.-. ..|+.++.++
T Consensus 173 v~~G~g--~~~~~~a-~~~gv--D~~iTGd~~~~~~~~a~e~gi~~i~~gH~~tE~~g~~~l~~~l~~~~~~~v~~~~ 245 (250)
T COG0327 173 VCSGSG--QGFLSEA-AAEGV--DAYITGDLSHHTAHDARELGLSVIDAGHYATERPGLKALAELLKELLGVEVTFSD 245 (250)
T ss_pred EEeCCC--hHHHHHH-HHcCC--CEEEECCCcHHHHHHHHHCCCeEEecCchHHHHHHHHHHHHHHHHhcCceEEEec
Confidence 344444 2333333 44454 3778888888888777777666666665 577776654322 2445555444
No 422
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.77 E-value=5.5e+02 Score=22.84 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=36.5
Q ss_pred EEcCCccHHHHHHHHHHc---CC------------CCcEEEeCCCChhHHHHHHHh-------ccEEEEcCCC--ccccH
Q 027511 9 VGGDGPKRVRLEEMREKH---SL------------QDRVEMLGAVPHAQVRSVLIS-------GHIFLNSSLT--EAFCI 64 (222)
Q Consensus 9 i~G~g~~~~~l~~~~~~~---~l------------~~~V~~~g~v~~~~~~~ll~~-------adv~v~~s~~--E~~g~ 64 (222)
-.|.|....+++++.+++ |+ +.+|-.+-+-+.+-+.++++. +++.++|... ++-+-
T Consensus 100 ~~g~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~ 179 (438)
T PRK00286 100 PAGIGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAA 179 (438)
T ss_pred eCCccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHH
Confidence 346666666666655544 33 335655555555555555543 4778888884 55556
Q ss_pred HHHHHH
Q 027511 65 AILEAA 70 (222)
Q Consensus 65 ~ilEAm 70 (222)
.+++|+
T Consensus 180 ~i~~al 185 (438)
T PRK00286 180 SIVAAI 185 (438)
T ss_pred HHHHHH
Confidence 666666
No 423
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=22.70 E-value=1.9e+02 Score=21.46 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCC--hhHHHHHHHhccEEEEcCC----------CccccHHHHHHHHhCCcEEEeCCCC
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVP--HAQVRSVLISGHIFLNSSL----------TEAFCIAILEAASCGLLTVSTRVGG 83 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~--~~~~~~ll~~adv~v~~s~----------~E~~g~~ilEAma~G~PvVa~~~gg 83 (222)
+...+..+++|.. |..+...+ .+++.+.++.+|++...-- .-+.-..+-|+...|.|++.+.-|.
T Consensus 3 ~~~~~~f~~~g~~--v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA 79 (154)
T PF03575_consen 3 EKFRKAFRKLGFE--VDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGA 79 (154)
T ss_dssp HHHHHHHHHCT-E--EEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHH
T ss_pred HHHHHHHHHCCCE--EEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHH
Confidence 4556677778864 66665553 6688999999999776432 1234457788889999999776543
No 424
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.64 E-value=4e+02 Score=21.21 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCCcEEEeCCC--ChhHHHH----HH-HhccEEEEcCCC-ccccHHHHHHHHhCCcEEEeCCCCccccc
Q 027511 17 VRLEEMREKHSLQDRVEMLGAV--PHAQVRS----VL-ISGHIFLNSSLT-EAFCIAILEAASCGLLTVSTRVGGVPEVL 88 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v--~~~~~~~----ll-~~adv~v~~s~~-E~~g~~ilEAma~G~PvVa~~~gg~~e~i 88 (222)
+.+++.+++++.. +.+...- ..+.... ++ ...|.++..+.. +...-.+-++...|+|+|..+.......
T Consensus 20 ~g~~~~~~~~g~~--v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~- 96 (271)
T cd06312 20 NGAEDAAKDLGVD--VEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAGDPKYK- 96 (271)
T ss_pred HHHHHHHHHhCCE--EEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCCCCccc-
Confidence 4555667777764 4443221 2222222 22 246877665443 2233344456677999999875422110
Q ss_pred cCCceEEeCCCHHHHHHHHHHHH
Q 027511 89 PDDMVVLAEPDPGDMVLAIRKAI 111 (222)
Q Consensus 89 ~~~~~g~~~~~~~~la~~i~~ll 111 (222)
.......+..|..+....+.+.+
T Consensus 97 ~~~~~~~V~~d~~~~g~~~~~~l 119 (271)
T cd06312 97 ELGALAYVGQDEYAAGEAAGERL 119 (271)
T ss_pred cccceEEeccChHHHHHHHHHHH
Confidence 12223344445544444444444
No 425
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.63 E-value=2.8e+02 Score=23.34 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=42.9
Q ss_pred ceEEEEEcCCc-cHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEE
Q 027511 4 KVRFIVGGDGP-KRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTV 77 (222)
Q Consensus 4 ~~~lvi~G~g~-~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvV 77 (222)
.-+.+|+|.|. .-.-+..+..+.+- .|+..-+ ...++...+++||++|++.-... ..-.|.+.-|.-|+
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~-~t~~L~~~~~~aDIvI~AtG~~~--~v~~~~lk~gavVi 228 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANA--TVTICHS-RTQNLPELVKQADIIVGAVGKPE--LIKKDWIKQGAVVV 228 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeC-CchhHHHHhccCCEEEEccCCCC--cCCHHHcCCCCEEE
Confidence 44789999876 55555555555553 5766554 34678888899999999874222 12235455554443
No 426
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=22.52 E-value=3.5e+02 Score=21.49 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=23.5
Q ss_pred hccEEEEcCCCccccHHHHHHHHhCCcEEE-eCCCCcccc
Q 027511 49 SGHIFLNSSLTEAFCIAILEAASCGLLTVS-TRVGGVPEV 87 (222)
Q Consensus 49 ~adv~v~~s~~E~~g~~ilEAma~G~PvVa-~~~gg~~e~ 87 (222)
.-|+++...- ..-..++.||...|+|+|+ .|....++.
T Consensus 108 ~Pdlliv~dp-~~~~~Av~EA~~l~IP~Iai~DTn~dp~~ 146 (196)
T TIGR01012 108 EPEVVVVTDP-RADHQALKEASEVGIPIVALCDTDNPLRY 146 (196)
T ss_pred CCCEEEEECC-ccccHHHHHHHHcCCCEEEEeeCCCCCcc
Confidence 3445443322 2235789999999999995 444444443
No 427
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.52 E-value=4.5e+02 Score=21.75 Aligned_cols=79 Identities=9% Similarity=-0.040 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHH-HhCCcEEEeCCCCccccccCCceEE
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAA-SCGLLTVSTRVGGVPEVLPDDMVVL 95 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAm-a~G~PvVa~~~gg~~e~i~~~~~g~ 95 (222)
..+.+.++++|++- +..-.+.+++..+...+|++-.+|..=. ...+++++ ..|+||+.++.-.
T Consensus 69 ~~L~~~~~~~Gl~~---~Tev~d~~~v~~~~e~vdilqIgs~~~~-n~~LL~~va~tgkPVilk~G~~------------ 132 (250)
T PRK13397 69 RYLHEVCQEFGLLS---VSEIMSERQLEEAYDYLDVIQVGARNMQ-NFEFLKTLSHIDKPILFKRGLM------------ 132 (250)
T ss_pred HHHHHHHHHcCCCE---EEeeCCHHHHHHHHhcCCEEEECccccc-CHHHHHHHHccCCeEEEeCCCC------------
Confidence 55666677777742 3333355667777677888888887322 24555555 6789998765311
Q ss_pred eCCCHHHHHHHHHHHHhc
Q 027511 96 AEPDPGDMVLAIRKAISL 113 (222)
Q Consensus 96 ~~~~~~~la~~i~~ll~~ 113 (222)
.+++++..+++.+.+.
T Consensus 133 --~t~~e~~~A~e~i~~~ 148 (250)
T PRK13397 133 --ATIEEYLGALSYLQDT 148 (250)
T ss_pred --CCHHHHHHHHHHHHHc
Confidence 2466777777776653
No 428
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.42 E-value=4.3e+02 Score=21.50 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=54.2
Q ss_pred HhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHHH
Q 027511 48 ISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHER 125 (222)
Q Consensus 48 ~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~~ 125 (222)
-.||+.+.|-...--.-++. -+|+-||+-|...+.-.......-+ ++.+..++-++++..+ +.....--+.
T Consensus 152 y~ADVVLvpLEDGDRteaLv---~mGK~ViaIDLNPLSRTar~AsItI----VDnivRA~p~li~~~~em~~~~reel~~ 224 (256)
T COG1701 152 YSADVVLVPLEDGDRTEALV---RMGKTVIAIDLNPLSRTARKASITI----VDNIVRAVPNLIEFVKEMKNASREELEE 224 (256)
T ss_pred eeccEEEEecCCCcHHHHHH---HhCCeEEEEeCCccccccccCceee----eHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 35788887766444343343 4799999998877776655544322 3567777777776533 2223333344
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 027511 126 MKKLYNWHDVAKRTEIVYD 144 (222)
Q Consensus 126 ~~~~fs~~~~~~~~~~~~~ 144 (222)
+-+.|+-..+..+....+.
T Consensus 225 iv~~ydN~~~l~eal~~I~ 243 (256)
T COG1701 225 IVENYDNKEVLAEALKHIA 243 (256)
T ss_pred HHHhhccHHHHHHHHHHHH
Confidence 4566777766666555443
No 429
>PRK08818 prephenate dehydrogenase; Provisional
Probab=22.12 E-value=4.5e+02 Score=23.06 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=31.1
Q ss_pred ceEEEEEcC-CccHHHHHHHHHHcCCCCcEEEeCCCC--hhHHHHHHHhccEEEEcC
Q 027511 4 KVRFIVGGD-GPKRVRLEEMREKHSLQDRVEMLGAVP--HAQVRSVLISGHIFLNSS 57 (222)
Q Consensus 4 ~~~lvi~G~-g~~~~~l~~~~~~~~l~~~V~~~g~v~--~~~~~~ll~~adv~v~~s 57 (222)
.-++.|+|- |-.-..+....++.. ...|.-.+... ..+....+.+||+.+.+.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADPGSLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCccccCCHHHHhcCCCEEEEeC
Confidence 347788887 776666666555431 22344444321 234566788899977643
No 430
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=21.83 E-value=1.8e+02 Score=24.09 Aligned_cols=90 Identities=7% Similarity=-0.026 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHH----hccEEEEcCC---CccccHHHHHHHHhCCcEEEeCCCCcccccc
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLI----SGHIFLNSSL---TEAFCIAILEAASCGLLTVSTRVGGVPEVLP 89 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~----~adv~v~~s~---~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~ 89 (222)
+.+++.++++++. +....--+.+++...+. ..|+++.+.. ...+...+..+...++||++.. ...+.
T Consensus 150 ~~~~~~a~~~g~~--l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~----~~~v~ 223 (294)
T PF04392_consen 150 EQLRKAAKKLGIE--LVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSS----DFYVK 223 (294)
T ss_dssp HHHHHHHHHTT-E--EEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESS----HHHHC
T ss_pred HHHHHHHHHcCCE--EEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECC----HHHhc
Confidence 5666677777764 33323234566666655 4587776654 3344445556677999999865 34556
Q ss_pred CCceEEeCCCH----HHHHHHHHHHHh
Q 027511 90 DDMVVLAEPDP----GDMVLAIRKAIS 112 (222)
Q Consensus 90 ~~~~g~~~~~~----~~la~~i~~ll~ 112 (222)
.|..+-...|. ...++...++++
T Consensus 224 ~Gal~~~~~~~~~~G~~Aa~~a~~IL~ 250 (294)
T PF04392_consen 224 AGALGGYSVDYYEQGRQAAEMAVRILK 250 (294)
T ss_dssp TT-SEEEE--HHHHHHHHHHHHHHHCT
T ss_pred CCcEEEEccCHHHHHHHHHHHHHHHHC
Confidence 66443222333 334444444444
No 431
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=21.82 E-value=4.7e+02 Score=21.93 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=42.2
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCCh----------hHHHHHHHhccEEEEcCCC-------------cc
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPH----------AQVRSVLISGHIFLNSSLT-------------EA 61 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~----------~~~~~ll~~adv~v~~s~~-------------E~ 61 (222)
.+|.++|+..-.-++.+...+.|. .|...|+-.. +...+.+..+|+.+.|--. +.
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~--~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGA--KVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCC--EEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 567777743222344444455565 3665555211 1345778999999987221 11
Q ss_pred c--cHHHHHHHHhCCcEEE
Q 027511 62 F--CIAILEAASCGLLTVS 78 (222)
Q Consensus 62 ~--g~~ilEAma~G~PvVa 78 (222)
. .-..++.|.-|.++++
T Consensus 81 ~~~~~~~l~~l~~~~~v~~ 99 (296)
T PRK08306 81 LVLTEELLELTPEHCTIFS 99 (296)
T ss_pred CcchHHHHHhcCCCCEEEE
Confidence 2 3467899999976775
No 432
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=21.54 E-value=2.1e+02 Score=26.24 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=34.8
Q ss_pred EEEEcCCc----cHHHHHHHHHHcCCCC-------------cEEEe----CCCChhHHHHHHHhccEEEE
Q 027511 7 FIVGGDGP----KRVRLEEMREKHSLQD-------------RVEML----GAVPHAQVRSVLISGHIFLN 55 (222)
Q Consensus 7 lvi~G~g~----~~~~l~~~~~~~~l~~-------------~V~~~----g~v~~~~~~~ll~~adv~v~ 55 (222)
++++|.|- ..+++.+++++++.+- +=.++ |...+.....++++||+++.
T Consensus 205 vi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~ 274 (535)
T TIGR03394 205 VMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLL 274 (535)
T ss_pred EEEEChhhcccCcHHHHHHHHHHhCCCEEEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEE
Confidence 67788663 3588999999998741 11233 34466778889999999876
No 433
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.29 E-value=94 Score=22.07 Aligned_cols=69 Identities=17% Similarity=0.069 Sum_probs=36.4
Q ss_pred EEEEEcCCccH---HHHHHHHHHcCCCCcEEEeCCCChhHHH----HHHHhccEEEEcCCCc---cccHHHHHHHHhCCc
Q 027511 6 RFIVGGDGPKR---VRLEEMREKHSLQDRVEMLGAVPHAQVR----SVLISGHIFLNSSLTE---AFCIAILEAASCGLL 75 (222)
Q Consensus 6 ~lvi~G~g~~~---~~l~~~~~~~~l~~~V~~~g~v~~~~~~----~ll~~adv~v~~s~~E---~~g~~ilEAma~G~P 75 (222)
++++.|.|... ..++....+.+ ...+..... .+.. ..+...|+++.-|... ..-.++-.|-..|.|
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~~-~~~~~~~~~---~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~ 76 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKES-KLPVFVYNA---AEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGAT 76 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHhc-CCceEEEcH---HHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCe
Confidence 46778877655 34555555542 112333222 1221 2345568887777632 223334455578999
Q ss_pred EEE
Q 027511 76 TVS 78 (222)
Q Consensus 76 vVa 78 (222)
+|+
T Consensus 77 vi~ 79 (120)
T cd05710 77 VIG 79 (120)
T ss_pred EEE
Confidence 885
No 434
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=21.17 E-value=5.6e+02 Score=23.78 Aligned_cols=86 Identities=14% Similarity=0.007 Sum_probs=53.7
Q ss_pred CCCCcEEEeCCCC---h-hHHHHHHHhccEEEEcCCC-ccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHH
Q 027511 27 SLQDRVEMLGAVP---H-AQVRSVLISGHIFLNSSLT-EAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPG 101 (222)
Q Consensus 27 ~l~~~V~~~g~v~---~-~~~~~ll~~adv~v~~s~~-E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~ 101 (222)
+..++|-+.|+-+ . +.+.+++ +.++-.++... |.--..+.++-+-|.-+|..+.-....-..-+..+....+.+
T Consensus 105 ~~~~~iavv~~~~~~~~~~~~~~~l-~~~i~~~~~~~~~e~~~~v~~lk~~G~~~vvG~~~~~~~A~~~g~~g~~~~s~e 183 (538)
T PRK15424 105 KLTSSIGVVTYQETIPALVAFQKTF-NLRIEQRSYVTEEDARGQINELKANGIEAVVGAGLITDLAEEAGMTGIFIYSAA 183 (538)
T ss_pred hcCCcEEEEecCcccHHHHHHHHHh-CCceEEEEecCHHHHHHHHHHHHHCCCCEEEcCchHHHHHHHhCCceEEecCHH
Confidence 3456777777632 1 2223333 34554444443 344557788889999999877554444445556665555679
Q ss_pred HHHHHHHHHHhc
Q 027511 102 DMVLAIRKAISL 113 (222)
Q Consensus 102 ~la~~i~~ll~~ 113 (222)
++.+++.++++.
T Consensus 184 ~i~~a~~~A~~~ 195 (538)
T PRK15424 184 TVRQAFEDALDM 195 (538)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 435
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=21.12 E-value=4.2e+02 Score=20.90 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=23.2
Q ss_pred HHHHHh-ccEEEEcCCCccccHHHHHHHHhCCcEEEeCCC
Q 027511 44 RSVLIS-GHIFLNSSLTEAFCIAILEAASCGLLTVSTRVG 82 (222)
Q Consensus 44 ~~ll~~-adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~g 82 (222)
.+++.+ .++++.+..........-.+...|+|+|+...+
T Consensus 60 ~~l~~~~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~ 99 (298)
T cd06268 60 RELVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISPGAT 99 (298)
T ss_pred HHHHhCCceEEEcCCcchhHHhhHHHHHhCCCcEEccCCC
Confidence 344444 677776655443332334455789999987654
No 436
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=21.05 E-value=4.3e+02 Score=24.27 Aligned_cols=62 Identities=8% Similarity=0.036 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHH--HhCCcEEEe
Q 027511 15 KRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAA--SCGLLTVST 79 (222)
Q Consensus 15 ~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAm--a~G~PvVa~ 79 (222)
+-.+++++.+.+|+.-+..|.+.-+-+++.. +.+|++-|..+. .+|..+.|.| -+|+|.+..
T Consensus 181 Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~-~~~A~~NIvl~~--~~g~~~A~~Le~~fgiP~i~~ 244 (513)
T CHL00076 181 DCRELKRLLQDLGIEINQIIPEGGSVEDLKN-LPKAWFNIVPYR--EVGLMTAKYLEKEFGMPYIST 244 (513)
T ss_pred hHHHHHHHHHHCCCeEEEEECCCCCHHHHHh-cccCcEEEEech--hhhHHHHHHHHHHhCCCeEee
Confidence 5588999999999988888877656666665 445566554433 2566777777 469999863
No 437
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=20.98 E-value=3e+02 Score=19.24 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=35.4
Q ss_pred ceEEEEEc-CCc--cHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHH
Q 027511 4 KVRFIVGG-DGP--KRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAA 70 (222)
Q Consensus 4 ~~~lvi~G-~g~--~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAm 70 (222)
.++++|.. |.+ .++.+..+++.++.+ -+.+ .+.+|+-..+....+.+..-..++|.-.+++.+
T Consensus 33 k~~lVI~A~D~s~~~kkki~~~~~~~~vp-~~~~---~t~~eLg~a~Gk~~~~~iai~d~g~a~~l~~~~ 98 (104)
T PRK05583 33 KVYLIIISNDISENSKNKFKNYCNKYNIP-YIEG---YSKEELGNAIGRDEIKILGVKDKNMAKKLLKLW 98 (104)
T ss_pred CceEEEEeCCCCHhHHHHHHHHHHHcCCC-EEEe---cCHHHHHHHhCCCCeEEEEEeChHHHHHHHHHH
Confidence 45555554 322 245666666666554 1222 346777777776665555555666666666544
No 438
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=20.97 E-value=1e+02 Score=26.48 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=39.2
Q ss_pred CCCceEEEEEcCCccH--HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHh
Q 027511 1 MRVKVRFIVGGDGPKR--VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASC 72 (222)
Q Consensus 1 ~~p~~~lvi~G~g~~~--~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~ 72 (222)
+.|.+-|+=+|..+.+ +..++..+-+.-...+.|.|++...++.. ..+||.|.=..+-.--++.+|.++.
T Consensus 174 ~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~inF~GnvEg~di~~--G~~DVvV~DGFtGNv~LKt~EG~~~ 245 (316)
T PRK13846 174 QPPTLGLLNIGSEERKGTEAHRQTFRMLRETFGSAFLGNIESGDVFS--GKVDIVVTDGFTGNIFLKTAEGVFD 245 (316)
T ss_pred CCCeEeEEECccccccCCHHHHHHHHHHhcCCCCCcEeeeccccccC--CCCCEEEeCCchHHHHHHHHHhHHH
Confidence 3688888888854332 22333222222121477999986665542 4689999554433334555555443
No 439
>PF02504 FA_synthesis: Fatty acid synthesis protein; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes []. The plsX gene encodes a poorly understood enzyme of phospholipid metabolism [].; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process; PDB: 1VI1_B 1U7N_B.
Probab=20.93 E-value=29 Score=29.85 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=36.3
Q ss_pred CCceEEEEEcCCccH--HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHH
Q 027511 2 RVKVRFIVGGDGPKR--VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAAS 71 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~--~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma 71 (222)
.|.+-++-+|..+.+ +.+++..+-+.-...+.|.|++...++.. -.+|+.|.=..+-.--++..|+++
T Consensus 172 ~PrVgLLNiG~E~~KG~~l~~ea~~lL~~~~~~nF~GnvEg~di~~--G~~DVvV~DGFtGNv~LKt~EG~~ 241 (323)
T PF02504_consen 172 NPRVGLLNIGTEEGKGNDLVKEAYELLKEDSSINFIGNVEGRDIFE--GKVDVVVCDGFTGNVVLKTAEGVA 241 (323)
T ss_dssp S-EEEEEESSSSTT-SSHHHHHHHHHHHC-TTSEEEEEEEGGGCCC--TS-SEEE--HHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCCccccHHHHHHHHHHhcCCCCEEEeeeecccccC--CCCcEEEEccchHHHHHHHHHHHH
Confidence 688888999954433 34444434333334789999997666544 458998844332222233444443
No 440
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=20.86 E-value=2.1e+02 Score=17.26 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCHHHHHHHHH
Q 027511 99 DPGDMVLAIRKAISLLPKIDPQVMHERMKKLYNWHDVAKRTE 140 (222)
Q Consensus 99 ~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 140 (222)
....+++.+.++++...........+++..-+.+++...++.
T Consensus 9 ~~~~L~~~i~~Iv~~EgPI~~~~L~~Ri~~a~G~~R~G~rI~ 50 (52)
T PF11784_consen 9 YRPQLARMIRQIVEVEGPIHEDELARRIARAWGLSRAGSRIR 50 (52)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHcCcccchHHHh
Confidence 346788888888887666666777778888888887777654
No 441
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=20.81 E-value=4.5e+02 Score=21.08 Aligned_cols=54 Identities=11% Similarity=-0.001 Sum_probs=32.4
Q ss_pred HhccEEEEcCCCc-ccc------HHHHHHHHhCCcEEEeCCCCccc--cccCCceEEeCCCHH
Q 027511 48 ISGHIFLNSSLTE-AFC------IAILEAASCGLLTVSTRVGGVPE--VLPDDMVVLAEPDPG 101 (222)
Q Consensus 48 ~~adv~v~~s~~E-~~g------~~ilEAma~G~PvVa~~~gg~~e--~i~~~~~g~~~~~~~ 101 (222)
+.+|+++.|+.+. ..+ ....-|+-.|++||.++..|..+ ..-.|...+..|+-.
T Consensus 168 ~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~ 230 (265)
T cd07572 168 QGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMIVDPWGE 230 (265)
T ss_pred CCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEEECCCcH
Confidence 4589999988642 222 12456777899999887655322 222344556665533
No 442
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.73 E-value=5.1e+02 Score=23.27 Aligned_cols=74 Identities=14% Similarity=-0.014 Sum_probs=40.6
Q ss_pred CCceEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCC--ChhHH-------------HHHHHhccEEEEcCCCccccHHH
Q 027511 2 RVKVRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAV--PHAQV-------------RSVLISGHIFLNSSLTEAFCIAI 66 (222)
Q Consensus 2 ~p~~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v--~~~~~-------------~~ll~~adv~v~~s~~E~~g~~i 66 (222)
|.+-++.|.|-|..-....+...+ |. +|.....- +.... ...+..+|++|..+-...-.-.+
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~--~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~ 80 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KY--DVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIV 80 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CC--EEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHH
Confidence 456678888877665555555543 43 34444321 10111 12345678877655433333356
Q ss_pred HHHHHhCCcEEE
Q 027511 67 LEAASCGLLTVS 78 (222)
Q Consensus 67 lEAma~G~PvVa 78 (222)
.+|...|+||++
T Consensus 81 ~~a~~~gi~v~~ 92 (454)
T PRK01368 81 KIAKNFNIPITS 92 (454)
T ss_pred HHHHHCCCceec
Confidence 677788888873
No 443
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=20.72 E-value=4.9e+02 Score=22.94 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=40.7
Q ss_pred EEEEEcCCccHHHHHHHHHHcCCCCcEEEeC-----------------C-CChhHHHHHHHhccEEEEcCCCccccHHHH
Q 027511 6 RFIVGGDGPKRVRLEEMREKHSLQDRVEMLG-----------------A-VPHAQVRSVLISGHIFLNSSLTEAFCIAIL 67 (222)
Q Consensus 6 ~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g-----------------~-v~~~~~~~ll~~adv~v~~s~~E~~g~~il 67 (222)
.+-|+|+|..-..+...+.++|.. |..+. . -+.+.+.++..+||+. |..+|+.+...+
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~--v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DVi--T~EfE~V~~~aL 78 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIK--VIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVI--TYEFENVPAEAL 78 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCE--EEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEE--EEeeccCCHHHH
Confidence 466788887767777777777762 22222 2 1245677777777765 445777777777
Q ss_pred HHHHhC
Q 027511 68 EAASCG 73 (222)
Q Consensus 68 EAma~G 73 (222)
+.+..-
T Consensus 79 ~~l~~~ 84 (375)
T COG0026 79 EKLAAS 84 (375)
T ss_pred HHHHhh
Confidence 776554
No 444
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.72 E-value=4.5e+02 Score=22.18 Aligned_cols=34 Identities=6% Similarity=0.166 Sum_probs=24.8
Q ss_pred HhCCcEEEeCCCCccccccCCceEEeCC-CHHHHHHHHHHHHhc
Q 027511 71 SCGLLTVSTRVGGVPEVLPDDMVVLAEP-DPGDMVLAIRKAISL 113 (222)
Q Consensus 71 a~G~PvVa~~~gg~~e~i~~~~~g~~~~-~~~~la~~i~~ll~~ 113 (222)
..++||+.-+.| ..||... +++++.+++.++++.
T Consensus 84 ~~~~Pvlgin~G---------~lGFl~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 84 RHNVPVLGINRG---------RLGFLTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCCCEEEEeCC---------cccccccCCHHHHHHHHHHHHcC
Confidence 357899987775 2344433 789999999999875
No 445
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.64 E-value=2.3e+02 Score=26.21 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=33.4
Q ss_pred EEEEcCCcc----HHHHHHHHHHcCCCC-------------cEEEe---CCCChhHHHHHHHhccEEEE
Q 027511 7 FIVGGDGPK----RVRLEEMREKHSLQD-------------RVEML---GAVPHAQVRSVLISGHIFLN 55 (222)
Q Consensus 7 lvi~G~g~~----~~~l~~~~~~~~l~~-------------~V~~~---g~v~~~~~~~ll~~adv~v~ 55 (222)
++++|.|-. .+++.+++++++.+- +=.++ |.........++.+||++|.
T Consensus 210 vi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~ 278 (574)
T PRK07979 210 VVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFA 278 (574)
T ss_pred EEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEE
Confidence 677886643 478999999998741 11233 33345667789999999765
No 446
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=20.57 E-value=4.6e+02 Score=21.19 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=45.9
Q ss_pred eEEEEEcCCccHHHHHHHHHHcCCCCcEEEeCCCChhHHHHHH-HhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCC
Q 027511 5 VRFIVGGDGPKRVRLEEMREKHSLQDRVEMLGAVPHAQVRSVL-ISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGG 83 (222)
Q Consensus 5 ~~lvi~G~g~~~~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll-~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg 83 (222)
++++-+-+ +..+..+..+++++.. .. .++.+++ ...|+.+-++-+...--....++..|++|++-..|.
T Consensus 2 ~eLvaV~D-~~~e~a~~~a~~~g~~----~~-----~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gA 71 (229)
T TIGR03855 2 FEIAAVYD-RNPKDAKELAERCGAK----IV-----SDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGA 71 (229)
T ss_pred eEEEEEEC-CCHHHHHHHHHHhCCc----eE-----CCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcc
Confidence 34444433 3456677777877631 22 3344444 458998877777666667788999999999965555
Q ss_pred cc
Q 027511 84 VP 85 (222)
Q Consensus 84 ~~ 85 (222)
+.
T Consensus 72 la 73 (229)
T TIGR03855 72 LA 73 (229)
T ss_pred cC
Confidence 43
No 447
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.55 E-value=2.4e+02 Score=19.77 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=39.7
Q ss_pred EEEEEcCCccHH---HHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccc--cHH-HHHHHHhCCcEEE-
Q 027511 6 RFIVGGDGPKRV---RLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAF--CIA-ILEAASCGLLTVS- 78 (222)
Q Consensus 6 ~lvi~G~g~~~~---~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~--g~~-ilEAma~G~PvVa- 78 (222)
++++.|.|.... .+..+.... ...++.+.... .....+..-|+++.-|..-.. -+. +-.|-..|.|+|+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~-~~~~~~~~~~~---~~~~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~I 76 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDE-AKIPVYVVKDY---TLPAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAI 76 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhc-cCCCEEEecCc---cCcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 367888775543 223333331 12345554432 122245667898887764222 222 2344567889885
Q ss_pred eCCCCccccc
Q 027511 79 TRVGGVPEVL 88 (222)
Q Consensus 79 ~~~gg~~e~i 88 (222)
|..+.+.++.
T Consensus 77 T~~~~l~~~~ 86 (119)
T cd05017 77 TSGGKLLEMA 86 (119)
T ss_pred eCCchHHHHH
Confidence 4444444433
No 448
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.49 E-value=4.9e+02 Score=21.39 Aligned_cols=76 Identities=8% Similarity=0.006 Sum_probs=49.0
Q ss_pred EEeCCC-ChhHHHHHHHhc--cEEEEcCC---CccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHHHHHH
Q 027511 33 EMLGAV-PHAQVRSVLISG--HIFLNSSL---TEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLA 106 (222)
Q Consensus 33 ~~~g~v-~~~~~~~ll~~a--dv~v~~s~---~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~ 106 (222)
...|.+ +.+++.++++.- +++|-.++ .+..-++.-=+..+|+|.+--....... .++......+|.++.++.
T Consensus 46 v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~--~~~~~~~~v~s~~~a~~~ 123 (248)
T PRK08057 46 VRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLP--QPGDRWIEVDDIEEAAEA 123 (248)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCC--CCCCCEEEECCHHHHHHH
Confidence 346888 889999999864 66777666 2333444445568899999776654311 123334555677777776
Q ss_pred HHHH
Q 027511 107 IRKA 110 (222)
Q Consensus 107 i~~l 110 (222)
+.+.
T Consensus 124 l~~~ 127 (248)
T PRK08057 124 LAPF 127 (248)
T ss_pred hhcc
Confidence 6554
No 449
>PLN02929 NADH kinase
Probab=20.44 E-value=2.8e+02 Score=23.64 Aligned_cols=66 Identities=6% Similarity=-0.035 Sum_probs=39.9
Q ss_pred HHHHHhccEEEEcCCCccccHHHHHH---HHhCCcEEEeCCCCc--cc-------cccCCceEEeC-CCHHHHHHHHHHH
Q 027511 44 RSVLISGHIFLNSSLTEAFCIAILEA---ASCGLLTVSTRVGGV--PE-------VLPDDMVVLAE-PDPGDMVLAIRKA 110 (222)
Q Consensus 44 ~~ll~~adv~v~~s~~E~~g~~ilEA---ma~G~PvVa~~~gg~--~e-------~i~~~~~g~~~-~~~~~la~~i~~l 110 (222)
......+|+.|.-.-.. +++-| +..++||+.-|.|.. .| +-..+..||.. .+++++.+.+.++
T Consensus 59 ~~~~~~~Dlvi~lGGDG----T~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~i 134 (301)
T PLN02929 59 SQPIRDVDLVVAVGGDG----TLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDV 134 (301)
T ss_pred ccccCCCCEEEEECCcH----HHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHH
Confidence 44556678876433322 33333 345799999888731 11 11112345544 4889999999999
Q ss_pred Hhc
Q 027511 111 ISL 113 (222)
Q Consensus 111 l~~ 113 (222)
++.
T Consensus 135 l~g 137 (301)
T PLN02929 135 LFG 137 (301)
T ss_pred HcC
Confidence 976
No 450
>PRK13761 hypothetical protein; Provisional
Probab=20.21 E-value=4.9e+02 Score=21.35 Aligned_cols=93 Identities=9% Similarity=0.063 Sum_probs=56.1
Q ss_pred HHhccEEEEcCCCccccHHHHHHHHhCCcEEEeCCCCccccccCCceEEeCCCHHHHHHHHHHHHhcCC--CCCHHHHHH
Q 027511 47 LISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPGDMVLAIRKAISLLP--KIDPQVMHE 124 (222)
Q Consensus 47 l~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~~gg~~e~i~~~~~g~~~~~~~~la~~i~~ll~~~~--~~~~~~~~~ 124 (222)
+-.||+++.|-...--+-++. .+|+-||+-|...+.-.-.....-+ ++.+..++-.+++.-+ +.......+
T Consensus 148 Iy~ADVVLVPLEDGDR~EaL~---~mGK~VI~IDLNPLSRTar~A~itI----VDni~RA~p~m~~~~~elk~~~~~el~ 220 (248)
T PRK13761 148 IYSADVVLVPLEDGDRTEALV---KMGKTVIAIDLNPLSRTARTATITI----VDNITRAVPNMTEYARELKKKDREELE 220 (248)
T ss_pred ceeccEEEecCCCCcHHHHHH---HcCCeEEEEeCCCcccccccCceee----ehhHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 345788888876544443443 6899999998877766554443322 2456666665555422 233445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH
Q 027511 125 RMKKLYNWHDVAKRTEIVYDRA 146 (222)
Q Consensus 125 ~~~~~fs~~~~~~~~~~~~~~~ 146 (222)
.+-..|+-....+.....+.+-
T Consensus 221 ~iv~~~dN~~~L~~al~~I~~r 242 (248)
T PRK13761 221 EIVENYDNKKNLSEALKEIRER 242 (248)
T ss_pred HHHHhcCcHHHHHHHHHHHHHH
Confidence 6667788777777666655443
No 451
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=20.15 E-value=2e+02 Score=25.03 Aligned_cols=60 Identities=8% Similarity=0.094 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHHhCCcEEEeC
Q 027511 17 VRLEEMREKHSLQDRVEMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTR 80 (222)
Q Consensus 17 ~~l~~~~~~~~l~~~V~~~g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma~G~PvVa~~ 80 (222)
..+.+..+++|..-....++.++.+++.. +...|++|+++-.. +++=+.-..++|++++.
T Consensus 257 ~~l~k~~~~~g~~~~li~~~~i~p~~L~~-f~~iD~~v~taCPR---i~iDd~~~f~kPlLTP~ 316 (347)
T COG1736 257 RELVKLLKEAGKEVYLIVVDEISPDKLAN-FDDIDAFVNTACPR---IPIDDGDRFKKPLLTPY 316 (347)
T ss_pred HHHHHHHHHcCCceEEEEecCCCHHHHhc-ccceeEEEEecCCC---cccchHhhhCCcccChH
Confidence 55666677777766566688887665544 44788899877654 56677778888888654
No 452
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=20.14 E-value=5.9e+02 Score=22.51 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHcCCCCcEEEe------------------CCCChhHHHHHHHhccEEEEcCCCccccHHHHHHHH--hCC
Q 027511 15 KRVRLEEMREKHSLQDRVEML------------------GAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAAS--CGL 74 (222)
Q Consensus 15 ~~~~l~~~~~~~~l~~~V~~~------------------g~v~~~~~~~ll~~adv~v~~s~~E~~g~~ilEAma--~G~ 74 (222)
+..+++++.++.|+.-+..+- |.-+-+++.+ +.+|.+-|..+. .++..+.+.|. +|+
T Consensus 170 d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~-~~~A~lniv~~~--~~~~~~a~~L~e~~Gi 246 (428)
T cd01965 170 DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRD-AGNAKATIALGE--YSGRKAAKALEEKFGV 246 (428)
T ss_pred CHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHH-hccCcEEEEECh--hhhHHHHHHHHHHHCC
Confidence 467888888888887655542 3333455544 233333332222 34555566654 888
Q ss_pred cEEEeC
Q 027511 75 LTVSTR 80 (222)
Q Consensus 75 PvVa~~ 80 (222)
|-+...
T Consensus 247 P~~~~~ 252 (428)
T cd01965 247 PYILFP 252 (428)
T ss_pred CeeecC
Confidence 888654
Done!