Query 027513
Match_columns 222
No_of_seqs 194 out of 732
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 99.9 2.7E-27 5.8E-32 196.9 8.7 115 10-126 3-122 (242)
2 KOG0439 VAMP-associated protei 99.9 1.6E-25 3.5E-30 190.1 13.3 124 5-130 4-134 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 9.8E-22 2.1E-26 148.9 10.0 89 10-98 2-94 (109)
4 PF14874 PapD-like: Flagellar- 98.5 2E-06 4.3E-11 64.2 9.9 66 8-73 2-70 (102)
5 PF00345 PapD_N: Pili and flag 96.4 0.047 1E-06 41.9 9.9 81 10-95 2-93 (122)
6 PRK10884 SH3 domain-containing 95.6 0.03 6.6E-07 47.6 6.0 58 153-210 135-194 (206)
7 PRK09918 putative fimbrial cha 91.7 1.9 4.2E-05 37.1 9.7 82 9-95 25-113 (230)
8 PRK10884 SH3 domain-containing 89.3 0.96 2.1E-05 38.5 5.7 60 154-213 129-193 (206)
9 PRK09926 putative chaperone pr 86.9 6.6 0.00014 34.1 9.6 83 8-95 25-121 (246)
10 PF11614 FixG_C: IG-like fold 86.2 2.8 6E-05 31.8 6.2 44 28-71 34-79 (118)
11 PF05957 DUF883: Bacterial pro 85.9 7.8 0.00017 28.4 8.2 20 189-208 73-92 (94)
12 PF15188 CCDC-167: Coiled-coil 85.6 2.4 5.2E-05 31.1 5.2 28 154-181 40-67 (85)
13 PF14646 MYCBPAP: MYCBP-associ 85.3 5.7 0.00012 37.2 8.9 101 12-128 233-347 (426)
14 PRK15249 fimbrial chaperone pr 83.8 10 0.00023 33.1 9.4 83 8-95 28-125 (253)
15 PF10779 XhlA: Haemolysin XhlA 83.2 5.1 0.00011 28.0 5.9 20 189-208 52-71 (71)
16 PRK15299 fimbrial chaperone pr 82.0 23 0.0005 30.3 10.7 83 8-95 22-115 (227)
17 PRK15295 fimbrial assembly cha 80.9 26 0.00057 30.0 10.7 82 9-95 20-111 (226)
18 PF07610 DUF1573: Protein of u 80.8 6.3 0.00014 25.0 5.2 41 31-72 2-43 (45)
19 PF07334 IFP_35_N: Interferon- 79.9 3.9 8.5E-05 29.4 4.3 28 152-179 2-29 (76)
20 smart00340 HALZ homeobox assoc 79.4 4.4 9.6E-05 25.8 3.9 27 154-180 9-35 (44)
21 PRK15211 fimbrial chaperone pr 79.3 31 0.00068 29.7 10.6 82 9-95 23-113 (229)
22 PRK11385 putativi pili assembl 77.7 33 0.00072 29.7 10.3 83 8-95 26-124 (236)
23 PF02183 HALZ: Homeobox associ 77.2 9.2 0.0002 24.6 5.1 32 149-180 11-42 (45)
24 PRK01844 hypothetical protein; 77.2 2.5 5.5E-05 30.0 2.6 18 190-207 7-24 (72)
25 PRK00523 hypothetical protein; 77.0 3.1 6.7E-05 29.6 3.0 20 188-207 6-25 (72)
26 PRK15208 long polar fimbrial c 76.9 38 0.00083 29.0 10.5 83 8-95 21-112 (228)
27 PRK15192 fimbrial chaperone Bc 76.7 38 0.00083 29.3 10.4 82 9-95 23-119 (234)
28 PRK00523 hypothetical protein; 76.4 2.8 6.2E-05 29.8 2.7 25 188-212 2-26 (72)
29 PRK01844 hypothetical protein; 76.1 3.1 6.8E-05 29.5 2.9 23 190-212 3-25 (72)
30 PRK15246 fimbrial assembly cha 75.6 44 0.00095 28.9 10.5 82 9-95 11-106 (233)
31 COG3763 Uncharacterized protei 75.5 3.3 7.1E-05 29.3 2.8 16 192-207 9-24 (71)
32 PF02344 Myc-LZ: Myc leucine z 75.5 11 0.00025 22.4 4.6 26 153-178 4-29 (32)
33 PF04977 DivIC: Septum formati 75.2 7.3 0.00016 27.0 4.7 29 149-177 23-51 (80)
34 PRK00888 ftsB cell division pr 75.2 7.1 0.00015 29.6 4.8 29 149-177 33-61 (105)
35 PRK15188 fimbrial chaperone pr 73.2 58 0.0013 28.1 10.6 82 9-95 28-118 (228)
36 PF02753 PapD_C: Pili assembly 73.2 12 0.00026 25.4 5.3 44 31-74 1-45 (68)
37 PF03672 UPF0154: Uncharacteri 72.7 3.3 7.2E-05 28.8 2.2 17 192-208 2-18 (64)
38 PRK10132 hypothetical protein; 71.8 31 0.00068 26.3 7.7 21 188-208 85-105 (108)
39 PF06156 DUF972: Protein of un 71.6 11 0.00024 28.7 5.2 29 151-179 23-51 (107)
40 PF07716 bZIP_2: Basic region 71.3 15 0.00031 24.2 5.1 28 151-178 26-53 (54)
41 KOG4343 bZIP transcription fac 70.6 11 0.00023 36.6 5.9 28 152-179 311-338 (655)
42 PRK10404 hypothetical protein; 69.8 22 0.00047 26.8 6.4 21 188-208 79-99 (101)
43 PRK09400 secE preprotein trans 68.8 18 0.00039 24.8 5.2 16 197-212 43-58 (61)
44 PF06305 DUF1049: Protein of u 68.2 3.4 7.3E-05 28.2 1.6 21 192-212 19-39 (68)
45 PF06005 DUF904: Protein of un 68.2 18 0.00038 25.7 5.3 22 150-171 18-39 (72)
46 PRK13169 DNA replication intia 67.7 15 0.00033 28.2 5.2 27 152-178 24-50 (110)
47 COG3763 Uncharacterized protei 67.6 6.9 0.00015 27.7 3.0 24 189-212 2-25 (71)
48 PRK15195 fimbrial chaperone pr 67.5 58 0.0013 28.0 9.4 83 8-95 25-116 (229)
49 PF01166 TSC22: TSC-22/dip/bun 66.2 20 0.00044 24.4 4.9 32 150-181 14-45 (59)
50 PF05506 DUF756: Domain of unk 65.5 11 0.00023 27.2 3.9 38 27-71 20-62 (89)
51 PF02404 SCF: Stem cell factor 65.2 2.1 4.5E-05 37.7 0.0 25 187-211 212-236 (273)
52 PF07790 DUF1628: Protein of u 64.6 8.5 0.00018 27.2 3.1 29 190-220 11-39 (80)
53 PRK15218 fimbrial chaperone pr 64.1 94 0.002 26.7 10.6 82 10-96 20-114 (226)
54 smart00338 BRLZ basic region l 64.0 22 0.00048 24.0 5.0 29 151-179 27-55 (65)
55 PRK15290 lfpB fimbrial chapero 63.8 1E+02 0.0022 26.9 10.6 82 9-95 38-131 (243)
56 PF11120 DUF2636: Protein of u 62.0 11 0.00023 26.1 3.0 20 190-209 7-26 (62)
57 TIGR02209 ftsL_broad cell divi 61.6 21 0.00045 25.2 4.8 27 150-176 31-57 (85)
58 PF14197 Cep57_CLD_2: Centroso 61.1 24 0.00051 24.8 4.8 20 156-175 46-65 (69)
59 PF14257 DUF4349: Domain of un 60.9 64 0.0014 27.9 8.6 26 154-179 166-191 (262)
60 PF00170 bZIP_1: bZIP transcri 60.8 29 0.00064 23.4 5.2 29 151-179 27-55 (64)
61 KOG0709 CREB/ATF family transc 60.5 23 0.00049 33.8 5.9 66 154-219 290-358 (472)
62 PF04420 CHD5: CHD5-like prote 60.5 17 0.00036 29.5 4.5 18 162-179 71-88 (161)
63 PF02883 Alpha_adaptinC2: Adap 59.4 54 0.0012 24.3 6.9 55 17-71 13-74 (115)
64 TIGR03752 conj_TIGR03752 integ 59.2 17 0.00036 34.8 4.8 32 149-180 65-96 (472)
65 PF05377 FlaC_arch: Flagella a 59.1 35 0.00075 23.0 5.0 32 148-179 5-36 (55)
66 PF10482 CtIP_N: Tumour-suppre 58.6 13 0.00028 28.8 3.3 24 150-173 96-119 (120)
67 COG4499 Predicted membrane pro 58.5 17 0.00036 34.0 4.6 58 153-215 188-247 (434)
68 PF06005 DUF904: Protein of un 58.4 28 0.00061 24.6 4.8 28 151-178 26-53 (72)
69 PRK14750 kdpF potassium-transp 58.4 21 0.00046 20.8 3.3 24 190-213 3-26 (29)
70 PRK15254 fimbrial chaperone pr 58.2 1.2E+02 0.0027 26.2 10.6 83 8-95 16-110 (239)
71 PF04678 DUF607: Protein of un 57.2 51 0.0011 27.1 7.0 30 151-180 58-87 (180)
72 PRK14127 cell division protein 56.8 32 0.00069 26.4 5.2 30 151-180 38-67 (109)
73 PRK15224 pili assembly chapero 56.6 1.3E+02 0.0029 26.0 10.2 79 10-95 30-118 (237)
74 COG3121 FimC P pilus assembly 56.6 1.3E+02 0.0028 25.9 10.4 83 9-96 28-120 (235)
75 PF06156 DUF972: Protein of un 56.6 27 0.00058 26.6 4.8 32 147-178 26-57 (107)
76 COG4575 ElaB Uncharacterized c 56.4 38 0.00083 25.8 5.5 21 188-208 82-102 (104)
77 PF03907 Spo7: Spo7-like prote 56.4 28 0.00062 29.7 5.3 26 192-217 31-56 (207)
78 PF00553 CBM_2: Cellulose bind 56.1 25 0.00054 26.0 4.5 48 24-71 12-79 (101)
79 PF01166 TSC22: TSC-22/dip/bun 55.5 27 0.00059 23.8 4.1 26 147-172 18-43 (59)
80 PRK13169 DNA replication intia 55.5 28 0.00061 26.7 4.8 32 147-178 26-57 (110)
81 PF06305 DUF1049: Protein of u 55.0 15 0.00032 24.9 2.9 24 154-177 45-68 (68)
82 PF11611 DUF4352: Domain of un 54.4 34 0.00073 25.4 5.1 56 24-79 35-104 (123)
83 TIGR03079 CH4_NH3mon_ox_B meth 54.2 23 0.0005 32.9 4.7 29 24-52 281-309 (399)
84 PRK09413 IS2 repressor TnpA; R 54.1 29 0.00063 26.5 4.7 28 152-179 73-100 (121)
85 PF13807 GNVR: G-rich domain o 54.0 75 0.0016 22.4 8.9 21 190-210 59-79 (82)
86 KOG3287 Membrane trafficking p 53.6 64 0.0014 27.9 7.0 30 188-217 200-229 (236)
87 PRK14127 cell division protein 53.6 39 0.00085 25.9 5.2 34 147-180 27-60 (109)
88 PF06612 DUF1146: Protein of u 53.4 15 0.00033 23.9 2.6 21 190-210 26-46 (48)
89 PF09608 Alph_Pro_TM: Putative 52.9 15 0.00032 32.0 3.1 26 188-213 210-235 (236)
90 PF07798 DUF1640: Protein of u 52.8 75 0.0016 26.0 7.3 18 190-207 157-174 (177)
91 PF12808 Mto2_bdg: Micro-tubul 52.7 32 0.00069 22.9 4.0 24 155-178 27-50 (52)
92 KOG4196 bZIP transcription fac 52.2 27 0.00059 27.7 4.2 27 154-180 78-104 (135)
93 PF10458 Val_tRNA-synt_C: Valy 52.1 34 0.00074 23.4 4.4 26 155-180 2-27 (66)
94 PF03980 Nnf1: Nnf1 ; InterPr 51.6 32 0.00069 25.7 4.5 29 150-178 80-108 (109)
95 PF00170 bZIP_1: bZIP transcri 51.6 47 0.001 22.3 5.0 31 149-179 32-62 (64)
96 PF13600 DUF4140: N-terminal d 51.6 94 0.002 22.8 7.9 29 151-179 71-99 (104)
97 PF12709 Kinetocho_Slk19: Cent 51.4 40 0.00087 24.8 4.8 30 150-179 49-78 (87)
98 smart00637 CBD_II CBD_II domai 51.1 47 0.001 23.8 5.2 20 52-71 51-72 (92)
99 PRK00888 ftsB cell division pr 50.5 37 0.00081 25.6 4.7 29 152-180 29-57 (105)
100 PF13473 Cupredoxin_1: Cupredo 50.5 64 0.0014 23.6 6.0 50 11-72 31-80 (104)
101 PF06072 Herpes_US9: Alphaherp 50.3 22 0.00048 24.3 3.0 19 192-210 41-59 (60)
102 PRK02898 cobalt transport prot 50.2 8.1 0.00018 29.2 1.0 22 189-210 68-89 (100)
103 smart00338 BRLZ basic region l 50.0 56 0.0012 22.0 5.2 32 148-179 31-62 (65)
104 PF06645 SPC12: Microsomal sig 49.7 20 0.00044 25.5 2.9 20 191-210 15-34 (76)
105 COG3771 Predicted membrane pro 49.3 20 0.00044 26.5 2.9 26 186-211 37-63 (97)
106 PRK15422 septal ring assembly 48.8 48 0.001 24.0 4.7 28 148-175 16-43 (79)
107 PF00672 HAMP: HAMP domain; I 48.6 28 0.00061 23.1 3.5 24 191-214 3-26 (70)
108 COG3074 Uncharacterized protei 48.3 50 0.0011 23.4 4.6 24 150-173 18-41 (79)
109 KOG4196 bZIP transcription fac 48.3 51 0.0011 26.1 5.2 27 153-179 84-110 (135)
110 PF05812 Herpes_BLRF2: Herpesv 48.2 36 0.00078 26.5 4.3 23 151-173 4-26 (118)
111 PF10633 NPCBM_assoc: NPCBM-as 48.2 27 0.00059 24.3 3.4 50 24-73 4-57 (78)
112 PRK15308 putative fimbrial pro 48.1 1.8E+02 0.004 25.1 9.7 85 7-96 15-118 (234)
113 PF05781 MRVI1: MRVI1 protein; 47.7 19 0.00042 34.9 3.3 30 188-217 479-508 (538)
114 PRK14748 kdpF potassium-transp 47.7 35 0.00076 19.9 3.1 21 192-212 5-25 (29)
115 TIGR03142 cytochro_ccmI cytoch 47.5 1.2E+02 0.0026 23.0 7.2 24 151-174 44-70 (117)
116 PRK15253 putative fimbrial ass 47.4 1.9E+02 0.0041 25.1 10.6 81 10-95 35-128 (242)
117 PF09813 Coiled-coil_56: Coile 47.2 87 0.0019 23.7 6.1 17 194-210 54-70 (100)
118 PF00927 Transglut_C: Transglu 46.9 69 0.0015 23.5 5.7 50 23-72 13-72 (107)
119 KOG4343 bZIP transcription fac 46.7 56 0.0012 31.9 6.1 31 151-181 303-333 (655)
120 PF06716 DUF1201: Protein of u 46.6 26 0.00056 22.9 2.7 25 187-211 12-36 (54)
121 PHA03155 hypothetical protein; 46.5 30 0.00066 26.7 3.6 23 151-173 9-31 (115)
122 COG4467 Regulator of replicati 46.5 52 0.0011 25.3 4.8 30 150-179 22-51 (114)
123 PF07716 bZIP_2: Basic region 46.1 50 0.0011 21.5 4.3 21 151-171 33-53 (54)
124 PHA03162 hypothetical protein; 45.5 31 0.00067 27.4 3.6 23 151-173 14-36 (135)
125 PF07106 TBPIP: Tat binding pr 44.7 42 0.00092 27.1 4.5 31 147-177 76-106 (169)
126 PF04977 DivIC: Septum formati 44.3 64 0.0014 22.1 4.9 29 152-180 19-47 (80)
127 PF00957 Synaptobrevin: Synapt 43.8 42 0.0009 24.0 3.9 10 167-176 41-50 (89)
128 PF13314 DUF4083: Domain of un 42.8 38 0.00082 23.0 3.2 25 192-216 12-36 (58)
129 PF04728 LPP: Lipoprotein leuc 42.7 87 0.0019 21.2 5.0 23 154-176 7-29 (56)
130 PF04102 SlyX: SlyX; InterPro 42.5 84 0.0018 21.7 5.2 32 150-181 18-49 (69)
131 KOG4797 Transcriptional regula 42.4 74 0.0016 24.5 5.1 30 151-180 68-97 (123)
132 PF01105 EMP24_GP25L: emp24/gp 42.4 9.2 0.0002 30.2 0.3 26 186-211 157-182 (183)
133 PF09640 DUF2027: Domain of un 41.8 67 0.0014 26.4 5.1 67 26-96 17-84 (162)
134 PRK00295 hypothetical protein; 41.4 80 0.0017 21.9 4.9 30 150-179 19-48 (68)
135 PHA00094 VI minor coat protein 41.4 38 0.00082 26.1 3.4 23 187-209 6-28 (112)
136 KOG3119 Basic region leucine z 41.3 57 0.0012 28.7 5.1 28 152-179 224-251 (269)
137 PF13544 N_methyl_2: Type IV p 41.2 32 0.00068 20.1 2.4 17 184-200 12-28 (31)
138 COG5415 Predicted integral mem 41.1 79 0.0017 27.3 5.6 59 150-208 15-87 (251)
139 KOG4005 Transcription factor X 41.0 53 0.0011 28.8 4.6 16 151-166 98-113 (292)
140 TIGR02894 DNA_bind_RsfA transc 40.9 70 0.0015 26.2 5.1 29 151-179 105-133 (161)
141 PF07407 Seadorna_VP6: Seadorn 40.8 41 0.00089 30.9 4.1 25 153-177 35-59 (420)
142 PRK04406 hypothetical protein; 40.7 80 0.0017 22.4 4.9 31 150-180 25-55 (75)
143 PHA02414 hypothetical protein 40.5 1.6E+02 0.0035 22.3 6.8 49 160-208 60-108 (111)
144 PF02419 PsbL: PsbL protein; 40.5 14 0.00031 22.7 0.8 8 194-201 22-29 (37)
145 PF09489 CbtB: Probable cobalt 40.3 42 0.00092 22.5 3.2 21 189-209 12-32 (54)
146 KOG1692 Putative cargo transpo 40.2 1.2E+02 0.0027 25.6 6.6 59 154-212 129-196 (201)
147 COG2991 Uncharacterized protei 40.2 26 0.00056 25.0 2.2 16 193-208 10-25 (77)
148 PRK15233 putative fimbrial cha 40.2 2.5E+02 0.0055 24.5 10.7 81 11-96 43-131 (246)
149 smart00809 Alpha_adaptinC2 Ada 40.2 1.4E+02 0.003 21.5 8.6 47 24-70 17-67 (104)
150 PF04880 NUDE_C: NUDE protein, 40.2 25 0.00054 29.0 2.5 22 157-178 24-45 (166)
151 COG4640 Predicted membrane pro 40.0 29 0.00063 32.6 3.1 29 190-218 54-82 (465)
152 PF10766 DUF2592: Protein of u 39.6 52 0.0011 20.6 3.2 11 198-208 15-25 (41)
153 PRK02793 phi X174 lysis protei 39.5 87 0.0019 22.0 4.9 30 150-179 22-51 (72)
154 PF06030 DUF916: Bacterial pro 39.2 72 0.0016 24.6 4.9 30 19-48 21-50 (121)
155 PRK00753 psbL photosystem II r 39.1 21 0.00046 22.1 1.4 11 203-213 25-35 (39)
156 PF11772 EpuA: DNA-directed RN 38.8 18 0.00039 23.6 1.1 16 193-208 4-19 (47)
157 PF04999 FtsL: Cell division p 38.8 76 0.0016 23.0 4.7 26 151-176 43-68 (97)
158 PF06280 DUF1034: Fn3-like dom 38.7 47 0.001 24.7 3.7 25 24-48 7-31 (112)
159 PF02687 FtsX: FtsX-like perme 38.1 1.2E+02 0.0025 21.8 5.7 45 167-211 24-69 (121)
160 PF09877 DUF2104: Predicted me 38.0 23 0.00051 26.6 1.8 21 192-212 3-23 (99)
161 PF11859 DUF3379: Protein of u 37.8 1.3E+02 0.0028 26.2 6.6 29 186-214 75-103 (232)
162 PRK02119 hypothetical protein; 37.7 96 0.0021 21.8 4.9 30 150-179 23-52 (73)
163 PRK13922 rod shape-determining 37.7 70 0.0015 27.8 5.1 17 154-170 73-89 (276)
164 PRK00736 hypothetical protein; 37.7 99 0.0021 21.4 4.9 30 150-179 19-48 (68)
165 PF10883 DUF2681: Protein of u 37.1 82 0.0018 23.2 4.5 23 153-175 26-48 (87)
166 PF05957 DUF883: Bacterial pro 37.1 33 0.00071 25.0 2.5 20 193-212 73-92 (94)
167 PF03904 DUF334: Domain of unk 37.0 96 0.0021 26.9 5.6 6 168-173 124-129 (230)
168 PRK04325 hypothetical protein; 36.9 1E+02 0.0022 21.8 4.9 30 150-179 23-52 (74)
169 TIGR02327 int_mem_ywzB conserv 36.4 36 0.00077 23.9 2.4 19 191-209 34-52 (68)
170 TIGR02230 ATPase_gene1 F0F1-AT 36.3 75 0.0016 24.0 4.4 19 194-212 53-71 (100)
171 PF14235 DUF4337: Domain of un 36.1 2.3E+02 0.0049 23.0 7.5 22 151-172 74-95 (157)
172 PRK04081 hypothetical protein; 36.0 39 0.00085 28.7 3.0 29 184-212 117-146 (207)
173 PF11446 DUF2897: Protein of u 36.0 43 0.00094 22.5 2.7 24 191-214 5-28 (55)
174 PF08172 CASP_C: CASP C termin 35.7 75 0.0016 27.8 4.9 26 153-178 96-121 (248)
175 PF02183 HALZ: Homeobox associ 35.5 1E+02 0.0022 19.7 4.3 28 153-180 8-35 (45)
176 PF13334 DUF4094: Domain of un 35.3 38 0.00083 25.2 2.6 25 191-215 3-28 (95)
177 PF10226 DUF2216: Uncharacteri 35.3 86 0.0019 26.5 4.9 27 151-177 49-75 (195)
178 PF05103 DivIVA: DivIVA protei 35.3 35 0.00076 26.0 2.5 33 146-178 21-53 (131)
179 PF04201 TPD52: Tumour protein 35.2 58 0.0013 26.8 3.8 20 195-214 99-118 (162)
180 PF10031 DUF2273: Small integr 35.0 47 0.001 21.9 2.7 17 190-206 32-48 (51)
181 PRK00846 hypothetical protein; 34.8 1.2E+02 0.0026 21.7 5.0 30 150-179 27-56 (77)
182 KOG2678 Predicted membrane pro 34.5 1.4E+02 0.003 26.0 6.1 12 169-180 199-210 (244)
183 PF13314 DUF4083: Domain of un 34.4 60 0.0013 22.1 3.2 24 188-211 4-27 (58)
184 TIGR02449 conserved hypothetic 34.4 1E+02 0.0022 21.4 4.4 17 158-174 15-31 (65)
185 PF04420 CHD5: CHD5-like prote 34.2 29 0.00063 28.1 2.0 23 153-175 69-91 (161)
186 COG3074 Uncharacterized protei 33.4 96 0.0021 22.0 4.2 13 153-165 28-40 (79)
187 PF15058 Speriolin_N: Sperioli 33.3 57 0.0012 27.6 3.6 24 149-172 11-34 (200)
188 PRK13743 conjugal transfer pro 33.1 54 0.0012 26.0 3.2 51 156-212 13-63 (141)
189 cd06409 PB1_MUG70 The MUG70 pr 32.9 26 0.00057 25.7 1.4 22 42-63 2-25 (86)
190 PRK09039 hypothetical protein; 32.8 82 0.0018 28.7 4.9 32 146-177 133-164 (343)
191 TIGR02209 ftsL_broad cell divi 32.4 1.3E+02 0.0029 21.0 5.0 29 152-180 26-54 (85)
192 PRK13922 rod shape-determining 32.4 86 0.0019 27.3 4.8 31 149-179 75-108 (276)
193 TIGR02459 CbtB cobalt transpor 32.0 64 0.0014 22.1 3.0 20 190-209 19-38 (60)
194 PF11906 DUF3426: Protein of u 32.0 1.9E+02 0.0042 22.4 6.4 50 25-74 68-134 (149)
195 PF03173 CHB_HEX: Putative car 31.9 36 0.00079 27.9 2.2 29 43-71 69-99 (164)
196 PF07664 FeoB_C: Ferrous iron 31.8 95 0.0021 20.3 3.9 23 192-214 5-28 (54)
197 COG5547 Small integral membran 31.7 67 0.0015 21.9 3.1 19 190-208 32-50 (62)
198 PRK09413 IS2 repressor TnpA; R 31.5 1E+02 0.0023 23.4 4.6 32 148-179 76-107 (121)
199 PF15018 InaF-motif: TRP-inter 31.5 93 0.002 19.3 3.5 25 190-214 11-35 (38)
200 PF11382 DUF3186: Protein of u 31.2 78 0.0017 28.4 4.4 27 152-178 34-60 (308)
201 PF13815 Dzip-like_N: Iguana/D 31.2 1.4E+02 0.003 22.8 5.3 25 154-178 91-115 (118)
202 PF03302 VSP: Giardia variant- 30.9 26 0.00057 32.6 1.3 22 186-207 370-392 (397)
203 TIGR03510 XapX XapX domain. Th 30.9 73 0.0016 20.9 3.0 14 197-210 6-19 (49)
204 PRK15249 fimbrial chaperone pr 30.6 1.1E+02 0.0025 26.6 5.2 43 30-73 177-220 (253)
205 PRK10265 chaperone-modulator p 30.6 1.2E+02 0.0027 22.4 4.8 25 149-173 70-94 (101)
206 KOG3156 Uncharacterized membra 30.5 2E+02 0.0043 24.8 6.4 19 189-207 199-217 (220)
207 TIGR01165 cbiN cobalt transpor 30.3 10 0.00023 28.1 -1.1 22 189-210 68-89 (91)
208 PF04340 DUF484: Protein of un 30.3 64 0.0014 27.3 3.6 30 151-180 41-70 (225)
209 KOG1666 V-SNARE [Intracellular 30.2 1.4E+02 0.0031 25.7 5.5 8 154-161 157-164 (220)
210 PF11668 Gp_UL130: HCMV glycop 30.1 92 0.002 25.3 4.1 43 17-59 102-154 (156)
211 PF08606 Prp19: Prp19/Pso4-lik 29.9 1.6E+02 0.0035 20.8 4.9 31 150-180 8-38 (70)
212 PF06522 B12D: NADH-ubiquinone 29.8 72 0.0016 22.4 3.2 25 192-216 10-34 (73)
213 PF11461 RILP: Rab interacting 29.7 1.3E+02 0.0028 20.6 4.3 30 152-181 5-34 (60)
214 PF11853 DUF3373: Protein of u 29.7 49 0.0011 31.9 3.0 21 158-178 32-52 (489)
215 COG1963 Uncharacterized protei 29.5 1.4E+02 0.0031 24.2 5.1 27 186-212 126-152 (153)
216 PF08277 PAN_3: PAN-like domai 29.4 91 0.002 20.9 3.6 19 27-45 53-71 (71)
217 PF12325 TMF_TATA_bd: TATA ele 29.3 1.3E+02 0.0028 23.4 4.8 24 150-173 23-46 (120)
218 TIGR03493 cellullose_BcsF cell 29.2 73 0.0016 22.0 2.9 20 190-209 7-26 (62)
219 COG1930 CbiN ABC-type cobalt t 29.1 11 0.00024 28.1 -1.1 21 189-209 66-86 (97)
220 PHA03029 hypothetical protein; 29.0 77 0.0017 22.8 3.2 16 193-208 18-33 (92)
221 PF11544 Spc42p: Spindle pole 28.8 1.9E+02 0.0041 20.8 5.1 29 150-178 26-54 (76)
222 PF09527 ATPase_gene1: Putativ 28.8 90 0.0019 20.3 3.3 22 193-214 10-31 (55)
223 PRK15274 putative periplasmic 28.7 4E+02 0.0087 23.4 10.6 81 10-95 28-120 (257)
224 PRK10803 tol-pal system protei 28.7 1.1E+02 0.0025 26.6 5.0 28 149-176 60-87 (263)
225 PRK00720 tatA twin arginine tr 28.7 59 0.0013 23.5 2.6 16 187-202 3-18 (78)
226 PTZ00478 Sec superfamily; Prov 28.6 1.9E+02 0.004 21.1 5.1 11 201-211 60-70 (81)
227 PF04880 NUDE_C: NUDE protein, 28.2 23 0.0005 29.2 0.4 24 153-177 27-50 (166)
228 TIGR02186 alph_Pro_TM conserve 27.8 51 0.0011 29.2 2.5 25 188-212 235-259 (261)
229 cd07429 Cby_like Chibby, a nuc 27.8 1.3E+02 0.0028 23.1 4.4 28 150-177 72-99 (108)
230 PF11151 DUF2929: Protein of u 27.7 63 0.0014 21.7 2.4 22 193-214 7-28 (57)
231 smart00605 CW CW domain. 27.6 75 0.0016 22.9 3.1 22 30-51 58-80 (94)
232 PF03823 Neurokinin_B: Neuroki 27.4 70 0.0015 21.7 2.5 21 192-212 4-24 (59)
233 COG3121 FimC P pilus assembly 27.3 1.2E+02 0.0025 26.1 4.7 44 29-74 165-210 (235)
234 PF07963 N_methyl: Prokaryotic 27.1 85 0.0019 16.7 2.4 17 186-202 1-18 (20)
235 PF08078 PsaX: PsaX family; I 26.9 96 0.0021 19.0 2.8 20 191-210 18-37 (37)
236 PF03904 DUF334: Domain of unk 26.8 2.5E+02 0.0055 24.4 6.5 18 155-172 118-135 (230)
237 PF11808 DUF3329: Domain of un 26.7 79 0.0017 23.0 3.0 15 194-208 13-27 (90)
238 PRK14139 heat shock protein Gr 26.4 2E+02 0.0044 24.0 5.8 32 150-181 39-70 (185)
239 PRK04561 tatA twin arginine tr 26.4 70 0.0015 22.9 2.6 17 186-202 2-18 (75)
240 PF12751 Vac7: Vacuolar segreg 26.1 42 0.00092 31.3 1.8 12 200-211 313-324 (387)
241 CHL00031 psbT photosystem II p 25.9 1.6E+02 0.0034 17.7 3.7 26 195-220 6-31 (33)
242 PF11833 DUF3353: Protein of u 25.7 67 0.0015 27.0 2.8 24 190-213 139-162 (194)
243 PRK14147 heat shock protein Gr 25.6 1.8E+02 0.004 23.9 5.4 34 148-181 23-56 (172)
244 KOG4010 Coiled-coil protein TP 25.5 1.1E+02 0.0023 26.0 3.8 20 158-177 45-64 (208)
245 TIGR00327 secE_euk_arch protei 25.4 1.5E+02 0.0032 20.3 4.0 12 201-212 43-54 (61)
246 PF09006 Surfac_D-trimer: Lung 25.3 2E+02 0.0043 18.7 4.6 25 154-178 3-27 (46)
247 PRK10722 hypothetical protein; 25.3 1.7E+02 0.0036 25.8 5.2 22 156-177 175-196 (247)
248 COG3937 Uncharacterized conser 25.3 83 0.0018 24.1 2.9 22 152-173 85-106 (108)
249 PRK15178 Vi polysaccharide exp 25.1 3.9E+02 0.0084 25.5 8.0 22 150-171 5-28 (434)
250 PRK11875 psbT photosystem II r 25.1 1.6E+02 0.0034 17.5 3.6 24 195-218 6-29 (31)
251 KOG1769 Ubiquitin-like protein 25.0 89 0.0019 23.6 3.0 25 27-51 19-43 (99)
252 PF07407 Seadorna_VP6: Seadorn 25.0 77 0.0017 29.2 3.2 21 153-173 42-62 (420)
253 COG5336 Uncharacterized protei 25.0 1.3E+02 0.0028 23.2 3.9 17 197-213 56-72 (116)
254 PRK01203 prefoldin subunit alp 24.9 1.3E+02 0.0029 23.7 4.2 25 154-178 4-28 (130)
255 PRK15422 septal ring assembly 24.8 1.9E+02 0.0042 20.9 4.6 9 165-173 54-62 (79)
256 TIGR02736 cbb3_Q_epsi cytochro 24.8 99 0.0021 20.9 2.9 21 192-212 5-25 (56)
257 PHA02911 C-type lectin-like pr 24.7 1.4E+02 0.003 25.5 4.5 24 188-211 29-52 (213)
258 COG5509 Uncharacterized small 24.6 1.6E+02 0.0035 20.3 3.9 23 152-174 27-49 (65)
259 PRK00442 tatA twin arginine tr 24.4 75 0.0016 23.7 2.5 17 186-202 2-18 (92)
260 PF05529 Bap31: B-cell recepto 24.3 1.3E+02 0.0028 24.7 4.3 28 153-180 157-184 (192)
261 KOG2722 Predicted membrane pro 24.2 77 0.0017 29.6 3.1 26 191-216 80-105 (408)
262 PF09738 DUF2051: Double stran 24.1 1.2E+02 0.0027 27.3 4.4 30 150-179 219-248 (302)
263 PF14916 CCDC92: Coiled-coil d 24.1 72 0.0016 21.9 2.2 23 151-173 22-44 (60)
264 PF08826 DMPK_coil: DMPK coile 23.9 2.4E+02 0.0053 19.2 5.1 13 165-177 40-52 (61)
265 KOG1690 emp24/gp25L/p24 family 23.9 4.6E+02 0.01 22.4 7.8 11 51-61 57-67 (215)
266 PF06698 DUF1192: Protein of u 23.8 1.7E+02 0.0037 19.9 4.0 24 152-175 23-46 (59)
267 PF02532 PsbI: Photosystem II 23.8 1.9E+02 0.004 17.8 4.3 27 192-219 6-32 (36)
268 KOG4112 Signal peptidase subun 23.5 1.1E+02 0.0023 23.0 3.2 22 187-208 26-47 (101)
269 KOG4253 Tryptophan-rich basic 23.5 1.4E+02 0.0031 24.5 4.2 27 193-219 103-132 (175)
270 PF00584 SecE: SecE/Sec61-gamm 23.4 1.1E+02 0.0025 19.9 3.1 6 203-208 49-54 (57)
271 TIGR02449 conserved hypothetic 23.3 2.1E+02 0.0046 19.8 4.5 27 153-179 17-43 (65)
272 TIGR03752 conj_TIGR03752 integ 23.2 1.3E+02 0.0028 28.9 4.4 28 146-173 69-96 (472)
273 TIGR02656 cyanin_plasto plasto 23.1 2.5E+02 0.0054 20.3 5.2 58 9-72 11-74 (99)
274 PF10473 CENP-F_leu_zip: Leuci 23.1 2.1E+02 0.0045 22.9 5.0 29 150-178 52-80 (140)
275 PF13591 MerR_2: MerR HTH fami 23.0 1.1E+02 0.0024 21.8 3.2 20 151-170 64-83 (84)
276 KOG1962 B-cell receptor-associ 22.9 1.1E+02 0.0023 26.4 3.6 22 155-176 177-198 (216)
277 PRK02958 tatA twin arginine tr 22.9 88 0.0019 22.3 2.5 16 187-202 3-18 (73)
278 TIGR03007 pepcterm_ChnLen poly 22.9 5E+02 0.011 24.4 8.5 20 191-210 415-434 (498)
279 PF05529 Bap31: B-cell recepto 22.9 1.7E+02 0.0036 24.0 4.7 29 149-177 160-188 (192)
280 PF00631 G-gamma: GGL domain; 22.8 56 0.0012 22.4 1.5 18 158-175 3-20 (68)
281 PF14197 Cep57_CLD_2: Centroso 22.8 2.7E+02 0.0058 19.4 5.0 16 164-179 47-62 (69)
282 COG0598 CorA Mg2+ and Co2+ tra 22.7 4.6E+02 0.0099 23.4 7.8 20 187-206 297-316 (322)
283 PF06796 NapE: Periplasmic nit 22.7 1.6E+02 0.0034 19.9 3.6 23 191-215 32-54 (56)
284 PF11027 DUF2615: Protein of u 22.7 1.2E+02 0.0026 23.1 3.4 23 186-208 51-73 (103)
285 COG4467 Regulator of replicati 22.5 1.5E+02 0.0033 22.7 3.9 29 147-175 26-54 (114)
286 KOG1693 emp24/gp25L/p24 family 22.4 3.4E+02 0.0073 23.2 6.3 30 185-214 175-204 (209)
287 PF11175 DUF2961: Protein of u 22.3 2E+02 0.0042 25.1 5.1 39 7-47 39-83 (237)
288 KOG0977 Nuclear envelope prote 22.3 1.5E+02 0.0033 29.0 4.8 30 150-179 162-191 (546)
289 PF12097 DUF3573: Protein of u 22.3 1.3E+02 0.0029 27.7 4.2 26 154-179 39-64 (383)
290 TIGR03096 nitroso_cyanin nitro 22.2 2.5E+02 0.0054 22.3 5.3 21 51-71 54-74 (135)
291 PF15294 Leu_zip: Leucine zipp 22.2 1.3E+02 0.0028 26.9 4.0 14 165-178 161-174 (278)
292 PRK14141 heat shock protein Gr 22.1 1.9E+02 0.0042 24.7 4.9 33 149-181 37-69 (209)
293 PF14645 Chibby: Chibby family 22.0 1.8E+02 0.0039 22.4 4.4 22 153-174 74-95 (116)
294 PF13373 DUF2407_C: DUF2407 C- 21.9 66 0.0014 25.7 2.0 20 191-210 86-105 (140)
295 COG1422 Predicted membrane pro 21.9 4.7E+02 0.01 22.3 7.1 25 149-173 78-107 (201)
296 PF13974 YebO: YebO-like prote 21.9 67 0.0015 23.3 1.8 17 192-208 3-19 (80)
297 PRK14872 rod shape-determining 21.7 1.4E+02 0.0029 27.5 4.2 24 152-175 59-82 (337)
298 PRK14155 heat shock protein Gr 21.7 2.1E+02 0.0046 24.3 5.1 35 147-181 17-51 (208)
299 PF13829 DUF4191: Domain of un 21.6 1.8E+02 0.0038 25.2 4.6 19 194-212 32-50 (224)
300 PF08041 PetM: PetM family of 21.5 1.5E+02 0.0033 17.6 2.9 16 192-207 9-24 (31)
301 COG4317 Uncharacterized protei 21.4 84 0.0018 23.0 2.2 15 193-207 31-45 (93)
302 COG4836 Predicted membrane pro 21.2 1.5E+02 0.0032 21.1 3.3 23 186-208 37-59 (77)
303 PF06483 ChiC: Chitinase C; I 21.1 80 0.0017 26.4 2.3 23 39-72 116-138 (180)
304 KOG3650 Predicted coiled-coil 21.1 1.9E+02 0.0041 22.0 4.1 10 203-212 96-105 (120)
305 PF07798 DUF1640: Protein of u 20.9 2.3E+02 0.005 23.0 5.1 13 197-209 160-172 (177)
306 TIGR01707 gspI general secreti 20.5 1.4E+02 0.003 22.3 3.4 24 187-210 1-25 (101)
307 PF08138 Sex_peptide: Sex pept 20.5 34 0.00073 22.9 0.0 17 189-205 4-20 (56)
308 TIGR00219 mreC rod shape-deter 20.5 1.9E+02 0.0042 25.6 4.8 29 150-178 66-94 (283)
309 TIGR01010 BexC_CtrB_KpsE polys 20.4 6.3E+02 0.014 22.7 8.5 17 194-210 337-353 (362)
310 PHA02657 hypothetical protein; 20.2 1.4E+02 0.0029 22.1 3.1 20 190-209 31-50 (95)
311 COG2431 Predicted membrane pro 20.2 1.1E+02 0.0023 27.6 3.0 30 185-214 101-130 (297)
312 TIGR01005 eps_transp_fam exopo 20.1 5.7E+02 0.012 25.6 8.6 22 190-211 431-452 (754)
313 PRK15295 fimbrial assembly cha 20.0 1.9E+02 0.0042 24.7 4.6 40 30-73 158-198 (226)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.94 E-value=2.7e-27 Score=196.88 Aligned_cols=115 Identities=37% Similarity=0.596 Sum_probs=100.4
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEec--cc---cCCCCCCCCCC
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR--AQ---RESPPDMQCKD 84 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~--~~---~~~~~~~~~~d 84 (222)
|.|+| ++.|+.|++...++.+.|.|++.++|+||||||+|+.||||||.|+|+|++++.|. +| .+..+|.+|||
T Consensus 3 veisp-~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISP-QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecC-ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 45666 45677799999999999999999999999999999999999999999999999998 45 45567899999
Q ss_pred eEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEcC
Q 027513 85 KFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVS 126 (222)
Q Consensus 85 KFlVqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~~~~ 126 (222)
|||||++..+...+..|+. ++|....+.-|.+.||||+|..
T Consensus 82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse 122 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSE 122 (242)
T ss_pred eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeec
Confidence 9999999999887777774 7666556777999999999984
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-25 Score=190.14 Aligned_cols=124 Identities=42% Similarity=0.645 Sum_probs=106.9
Q ss_pred CCCccEEEecC-eeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEec--ccc--CCCCC
Q 027513 5 GGNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR--AQR--ESPPD 79 (222)
Q Consensus 5 ~~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~--~~~--~~~~~ 79 (222)
+...+|.|+|. +|.|.+++++++++.|+|+|+++.+||||||||+|++||||||.|+|.||++++|. .|. ..|.+
T Consensus 4 ~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d 83 (218)
T KOG0439|consen 4 ETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPD 83 (218)
T ss_pred cccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchh
Confidence 34578999995 99999999989999999999999999999999999999999999999999999998 344 44778
Q ss_pred CCCCCeEEEEEEecCCCCCCCCCCCCcccccC--CCcceEEEeEEEEcCCCCC
Q 027513 80 MQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDS--GKTIEECKLRVVYVSPSSA 130 (222)
Q Consensus 80 ~~~~dKFlVqs~~~~~~~~~~di~~~~f~k~~--~~~i~e~kL~~~~~~p~~~ 130 (222)
++|+|||+||++.++.+ +..++ .+.|.... +..+.+.+++|.|..|..+
T Consensus 84 ~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~ 134 (218)
T KOG0439|consen 84 FKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTET 134 (218)
T ss_pred hcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCC
Confidence 88999999999999986 33333 24454444 7899999999999988876
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.87 E-value=9.8e-22 Score=148.95 Aligned_cols=89 Identities=39% Similarity=0.672 Sum_probs=71.7
Q ss_pred EEEecC-eeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEecc--cc-CCCCCCCCCCe
Q 027513 10 ISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRA--QR-ESPPDMQCKDK 85 (222)
Q Consensus 10 L~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~--~~-~~~~~~~~~dK 85 (222)
|.|+|. .|.|..++++..++.|+|+|+++++||||||||+|.+|+|+|+.|+|+||+++.|.+ +. ........+||
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~~~~dk 81 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSNKKKDK 81 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTSTSSEE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCCCCCCE
Confidence 689998 899999999999999999999999999999999999999999999999999999983 32 22222223999
Q ss_pred EEEEEEecCCCCC
Q 027513 86 FLLQSTIVPSNTD 98 (222)
Q Consensus 86 FlVqs~~~~~~~~ 98 (222)
|+|+++.++++..
T Consensus 82 f~I~~~~~~~~~~ 94 (109)
T PF00635_consen 82 FLIQSIVVPDNAT 94 (109)
T ss_dssp EEEEEEEE-TT-S
T ss_pred EEEEEEEcCCCcc
Confidence 9999999987753
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.46 E-value=2e-06 Score=64.25 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=57.2
Q ss_pred ccEEEecCeeEEec-ccCCeeEeEEEEEcCCCCeEEEEeeeCC--CCceEeeCCeeeeCCCCeeEeccc
Q 027513 8 QLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTTS--PKKYFVRPNTGVVQPWDSCIIRAQ 73 (222)
Q Consensus 8 ~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT~--P~~Y~VrP~~Gii~P~~s~~I~~~ 73 (222)
+.|.++|.+|.|-. ..+...+..++|+|.+..+..|+|+.-. ...|.|.|..|+|.||+++++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~ 70 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVT 70 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEE
Confidence 56899999999976 3466778999999999999999998654 468999999999999999999854
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.40 E-value=0.047 Score=41.90 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=59.2
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCC---C------CceEeeCCeeeeCCCCeeEecc-ccCC-CC
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS---P------KKYFVRPNTGVVQPWDSCIIRA-QRES-PP 78 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~---P------~~Y~VrP~~Gii~P~~s~~I~~-~~~~-~~ 78 (222)
|.|+|..+.|.. +.....++|+|.++.++.+.++... . ..|.|-|+.-.|+||++..|.+ .... +.
T Consensus 2 i~i~~trii~~~---~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~~~~~~~ 78 (122)
T PF00345_consen 2 IQISPTRIIFNE---SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYRGSKLPI 78 (122)
T ss_dssp EEESSSEEEEET---TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEECSGS-S
T ss_pred EEEccEEEEEeC---CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEecCCCCC
Confidence 678899888886 3458899999999999999988775 1 2789999999999999999984 2222 23
Q ss_pred CCCCCCeEEEEEEecCC
Q 027513 79 DMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 79 ~~~~~dKFlVqs~~~~~ 95 (222)
+. ..-|.+....+|.
T Consensus 79 ~~--E~~yrl~~~~iP~ 93 (122)
T PF00345_consen 79 DR--ESLYRLSFREIPP 93 (122)
T ss_dssp SS---EEEEEEEEEEES
T ss_pred Cc--eEEEEEEEEEEec
Confidence 32 2344555555554
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.62 E-value=0.03 Score=47.63 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHH-HHHHHHHHHHHHHHhhh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRRGQR-KGVRGFSLMFA-AFVGLIGIMVGLILNLL 210 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~~~~-~~~~g~sl~~~-~lv~ll~~llG~~l~~~ 210 (222)
.+|.+|.++|++|+..++++.+.++..... ....-+.+++. -+|+++|+|||.|+..|
T Consensus 135 ~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp~l 194 (206)
T PRK10884 135 NGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLPHL 194 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 344555555555555444444444433221 11112233333 78888888888888766
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=91.66 E-value=1.9 Score=37.07 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=58.8
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCC-----CceEeeCCeeeeCCCCeeEeccc--cCCCCCCC
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP-----KKYFVRPNTGVVQPWDSCIIRAQ--RESPPDMQ 81 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P-----~~Y~VrP~~Gii~P~~s~~I~~~--~~~~~~~~ 81 (222)
-|.+.|..+.|.. +.....++|+|.++.++....+.... .-|-|.|+.-.|+||++..|.+. ...|.|.
T Consensus 25 ~v~l~~tRvi~~~---~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~lp~dr- 100 (230)
T PRK09918 25 GMVPETSVVIVEE---SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSGSPLNT- 100 (230)
T ss_pred eEEEccEEEEEEC---CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCCCCCCe-
Confidence 4677888888886 45678999999999887777655322 25999999999999999988832 2333331
Q ss_pred CCCeEEEEEEecCC
Q 027513 82 CKDKFLLQSTIVPS 95 (222)
Q Consensus 82 ~~dKFlVqs~~~~~ 95 (222)
..-|.+....+|.
T Consensus 101 -Es~f~l~v~~IP~ 113 (230)
T PRK09918 101 -EHLLRVSFEGVPP 113 (230)
T ss_pred -eEEEEEEEEEcCC
Confidence 2236666666665
No 8
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.28 E-value=0.96 Score=38.51 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-----CchHHHHHHHHHHHHHHHHHHhhhccC
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKRRGQRKGVR-----GFSLMFAAFVGLIGIMVGLILNLLLSS 213 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~~~~~~~~~-----g~sl~~~~lv~ll~~llG~~l~~~~~~ 213 (222)
....+++.|.++|++|++|+..++.+...-... .-..+-.++.+=.-+++|.|+|+|+..
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp~ 193 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLPH 193 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 444455557788888888888777664321110 122456899999999999999999866
No 9
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=86.88 E-value=6.6 Score=34.11 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=60.0
Q ss_pred ccEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCC----------ceEeeCCeeeeCCCCeeEeccc--cC
Q 027513 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPK----------KYFVRPNTGVVQPWDSCIIRAQ--RE 75 (222)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~----------~Y~VrP~~Gii~P~~s~~I~~~--~~ 75 (222)
--|.++|..+.|.. +.....++|.|.++.++.-..+...-+ -|-|-|+.--|+||+...|.+. ..
T Consensus 25 A~i~l~~TRvI~~~---~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 25 ADIVISGTRIIYKS---DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred eeEEeCceEEEEeC---CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCC
Confidence 35788888889986 456789999999999888777665322 3999999999999999998832 22
Q ss_pred --CCCCCCCCCeEEEEEEecCC
Q 027513 76 --SPPDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 76 --~~~~~~~~dKFlVqs~~~~~ 95 (222)
.|.|. ..-|-+....+|+
T Consensus 102 ~~lP~Dr--ESlf~lnv~eIP~ 121 (246)
T PRK09926 102 TALPKDR--ESVFWFNVLEVPP 121 (246)
T ss_pred CCCCCCc--eEEEEEEeeecCC
Confidence 34331 1236666666665
No 10
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=86.22 E-value=2.8 Score=31.84 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=31.8
Q ss_pred EeEEEEEcCCCCeEEEEeeeCCCCceEe-eCCee-eeCCCCeeEec
Q 027513 28 FCDLKVINNTEHHVAFKVKTTSPKKYFV-RPNTG-VVQPWDSCIIR 71 (222)
Q Consensus 28 ~~~l~L~N~s~~~VaFKVKTT~P~~Y~V-rP~~G-ii~P~~s~~I~ 71 (222)
...++|.|.++++.-|.|+...+..+.+ .|... -|.||++..+.
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~ 79 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVP 79 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEE
Confidence 5799999999999999999998888888 66555 48999998887
No 11
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=85.89 E-value=7.8 Score=28.36 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 027513 189 SLMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 189 sl~~~~lv~ll~~llG~~l~ 208 (222)
|+.-+.+.+.+||+||++++
T Consensus 73 P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 73 PWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 68888888888888888874
No 12
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=85.58 E-value=2.4 Score=31.14 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
.+.+|...+.......++||..||+.+.
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 5567778888888888889999998754
No 13
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=85.27 E-value=5.7 Score=37.20 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=69.3
Q ss_pred EecC-eeEEecccCCeeEeEEE-EEcCCCCeEEEEeeeCCC------------CceEeeCCeeeeCCCCeeEeccccCCC
Q 027513 12 VHPE-ELKFIFELEKQGFCDLK-VINNTEHHVAFKVKTTSP------------KKYFVRPNTGVVQPWDSCIIRAQRESP 77 (222)
Q Consensus 12 i~P~-eL~F~~~~~~~~~~~l~-L~N~s~~~VaFKVKTT~P------------~~Y~VrP~~Gii~P~~s~~I~~~~~~~ 77 (222)
+.+. .|.|...........|. |.|.+..-|.|..+--.+ ..|......|+|.||++..|.+.+...
T Consensus 233 ~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~ 312 (426)
T PF14646_consen 233 VSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSR 312 (426)
T ss_pred cCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCC
Confidence 3344 78999877777777777 999999999998665443 578899999999999999998543211
Q ss_pred CCCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEcCCC
Q 027513 78 PDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPS 128 (222)
Q Consensus 78 ~~~~~~dKFlVqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~~~~p~ 128 (222)
.-...++...+.+-+. +|. ......+|+.+...|.
T Consensus 313 ~~Gif~E~W~L~t~P~------------l~~----~~~l~v~L~G~~~~~~ 347 (426)
T PF14646_consen 313 KVGIFKERWELRTFPP------------LFG----GASLTVRLHGVCTPPD 347 (426)
T ss_pred CceEEEEEEEEEEecc------------ccC----CCceEEEEEEEEcCch
Confidence 1123466666666221 232 1225678888877664
No 14
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=83.80 E-value=10 Score=33.06 Aligned_cols=83 Identities=14% Similarity=0.216 Sum_probs=57.6
Q ss_pred ccEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCC-----------ceEeeCCeeeeCCCCeeEeccc-c-
Q 027513 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPK-----------KYFVRPNTGVVQPWDSCIIRAQ-R- 74 (222)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~-----------~Y~VrP~~Gii~P~~s~~I~~~-~- 74 (222)
--|.|+|..+.|.. +.....|+|.|.++.++.-..++...+ -|-|-|+.--|+||+...|.+. .
T Consensus 28 A~l~l~~TRviy~~---~~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~ 104 (253)
T PRK15249 28 ASVTILGSRIIYPS---TASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNN 104 (253)
T ss_pred eEEEeCceEEEEeC---CCcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcC
Confidence 34788888899976 345689999999998877776543211 3999999999999999998832 2
Q ss_pred --CCCCCCCCCCeEEEEEEecCC
Q 027513 75 --ESPPDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 75 --~~~~~~~~~dKFlVqs~~~~~ 95 (222)
..|.|. .--|-+....+|+
T Consensus 105 ~~~lP~DR--ESlf~lnv~eIP~ 125 (253)
T PRK15249 105 TKKLPQDR--ESVFWFNVLQVPP 125 (253)
T ss_pred CCCCCCCc--eEEEEEEeeecCC
Confidence 233332 1235555555665
No 15
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=83.25 E-value=5.1 Score=28.03 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 027513 189 SLMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 189 sl~~~~lv~ll~~llG~~l~ 208 (222)
++.-.++-+++++++|++++
T Consensus 52 W~~r~iiGaiI~~i~~~i~K 71 (71)
T PF10779_consen 52 WIWRTIIGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34445666666777776654
No 16
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=82.00 E-value=23 Score=30.31 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=58.5
Q ss_pred ccEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCC--------CceEeeCCeeeeCCCCeeEeccc--cC-C
Q 027513 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP--------KKYFVRPNTGVVQPWDSCIIRAQ--RE-S 76 (222)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P--------~~Y~VrP~~Gii~P~~s~~I~~~--~~-~ 76 (222)
.-|.++|..+.|... .....|+|.|.++.++.-..++... .-|-|-|+.--|+||+...|.+. .. .
T Consensus 22 a~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~l 98 (227)
T PRK15299 22 AGINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGGNL 98 (227)
T ss_pred eeEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCCCC
Confidence 347888888888863 4578999999998887766654321 24999999999999999998832 22 3
Q ss_pred CCCCCCCCeEEEEEEecCC
Q 027513 77 PPDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 77 ~~~~~~~dKFlVqs~~~~~ 95 (222)
|.|. ..-|-+....+|+
T Consensus 99 P~Dr--Eslf~lnv~eIP~ 115 (227)
T PRK15299 99 PEDR--ESLYWLDIKSIPS 115 (227)
T ss_pred CCcc--eEEEEEEeEecCC
Confidence 4441 2346666666665
No 17
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=80.94 E-value=26 Score=30.00 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=56.2
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCC-------CCceEeeCCeeeeCCCCeeEeccc-c-C-CCC
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRAQ-R-E-SPP 78 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~-------P~~Y~VrP~~Gii~P~~s~~I~~~-~-~-~~~ 78 (222)
-|.+++..+.|.. +.....++|.|.++.++.=..+... ..-|-|-|+.=-|+||+...|.+. . + .|.
T Consensus 20 ~i~l~~TRvI~~~---~~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~~LP~ 96 (226)
T PRK15295 20 SIVVGGTRLVFDG---NNDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGAPLPA 96 (226)
T ss_pred cEEeCceEEEEeC---CCceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCCCCCC
Confidence 4678888888886 3457899999999887554443322 125999999999999999999833 2 2 233
Q ss_pred CCCCCCeEEEEEEecCC
Q 027513 79 DMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 79 ~~~~~dKFlVqs~~~~~ 95 (222)
|. ..-|-+....+|+
T Consensus 97 Dr--Eslf~lnv~~IP~ 111 (226)
T PRK15295 97 DR--ESMYWLNIKGIPS 111 (226)
T ss_pred Cc--eEEEEEEEEEcCC
Confidence 31 2236666666665
No 18
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=80.78 E-value=6.3 Score=24.97 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=33.1
Q ss_pred EEEEcCCCCeE-EEEeeeCCCCceEeeCCeeeeCCCCeeEecc
Q 027513 31 LKVINNTEHHV-AFKVKTTSPKKYFVRPNTGVVQPWDSCIIRA 72 (222)
Q Consensus 31 l~L~N~s~~~V-aFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~ 72 (222)
.+++|.++.++ -.+|+|+. +...+......|.||++..|.+
T Consensus 2 F~~~N~g~~~L~I~~v~tsC-gCt~~~~~~~~i~PGes~~i~v 43 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSC-GCTTAEYSKKPIAPGESGKIKV 43 (45)
T ss_pred EEEEECCCCcEEEEEeeEcc-CCEEeeCCcceECCCCEEEEEE
Confidence 57899988665 56677775 7888999999999999988763
No 19
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=79.91 E-value=3.9 Score=29.38 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
|..+++|..+|++++++|+.||..+++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688999999999999999998887764
No 20
>smart00340 HALZ homeobox associated leucin zipper.
Probab=79.40 E-value=4.4 Score=25.81 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
-|+.=...|.+||++|+.|+..||...
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455556788899999999999999764
No 21
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=79.28 E-value=31 Score=29.72 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=56.6
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCC------CCceEeeCCeeeeCCCCeeEeccc--cC-CCCC
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS------PKKYFVRPNTGVVQPWDSCIIRAQ--RE-SPPD 79 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~------P~~Y~VrP~~Gii~P~~s~~I~~~--~~-~~~~ 79 (222)
-|.+++..+.|+. +....+++|.|.++.++.-..+... ..-|-|-|+.=.|+||+...|.+. .+ .|.|
T Consensus 23 ~v~l~~TRvIy~~---~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~~LP~D 99 (229)
T PRK15211 23 AFVLNGTRFIYDE---GRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDSALPKD 99 (229)
T ss_pred EEEECceEEEEcC---CCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCCCCCCC
Confidence 4677777888876 4557899999999987665544421 124999999999999999999832 22 3444
Q ss_pred CCCCCeEEEEEEecCC
Q 027513 80 MQCKDKFLLQSTIVPS 95 (222)
Q Consensus 80 ~~~~dKFlVqs~~~~~ 95 (222)
. ..-|-+....+|+
T Consensus 100 R--ESlf~lnv~~IP~ 113 (229)
T PRK15211 100 R--ESLFWLNVQEIPP 113 (229)
T ss_pred c--eEEEEEEEEEcCC
Confidence 2 2346666666665
No 22
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=77.69 E-value=33 Score=29.68 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=57.2
Q ss_pred ccEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeC------------CCCceEeeCCeeeeCCCCeeEeccc--
Q 027513 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTT------------SPKKYFVRPNTGVVQPWDSCIIRAQ-- 73 (222)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT------------~P~~Y~VrP~~Gii~P~~s~~I~~~-- 73 (222)
.-|.+++..+.|.. +....+++|.|.+++++.=..+.. ...-|-|-|+.=-|+||+...+.+.
T Consensus 26 A~v~l~~TRvIy~~---~~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~ 102 (236)
T PRK11385 26 AGVVVGGTRFIFPA---DRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRT 102 (236)
T ss_pred eeEEeCceEEEEcC---CCceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 45677777888886 456789999999998755444321 1124999999999999999998832
Q ss_pred c--CCCCCCCCCCeEEEEEEecCC
Q 027513 74 R--ESPPDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 74 ~--~~~~~~~~~dKFlVqs~~~~~ 95 (222)
. ..|.| ...-|-+....+|+
T Consensus 103 ~~~~LP~D--RESlf~lnv~~IPp 124 (236)
T PRK11385 103 ESDILPVD--RETLFELSIASVPS 124 (236)
T ss_pred CCCCCCCC--ceEEEEEEEEecCC
Confidence 2 23444 23456666666665
No 23
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.24 E-value=9.2 Score=24.60 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
++....|.++..+|.+||+.|+.|+..|+...
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456888888888888888888888776543
No 24
>PRK01844 hypothetical protein; Provisional
Probab=77.16 E-value=2.5 Score=30.02 Aligned_cols=18 Identities=11% Similarity=0.488 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027513 190 LMFAAFVGLIGIMVGLIL 207 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l 207 (222)
++.+++.+|+|+++|||+
T Consensus 7 I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 7 ILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455566666666655
No 25
>PRK00523 hypothetical protein; Provisional
Probab=77.03 E-value=3.1 Score=29.58 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 027513 188 FSLMFAAFVGLIGIMVGLIL 207 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l 207 (222)
..++.+++.+|+|+++|||+
T Consensus 6 l~I~l~i~~li~G~~~Gffi 25 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666665
No 26
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=76.95 E-value=38 Score=29.01 Aligned_cols=83 Identities=11% Similarity=0.218 Sum_probs=55.3
Q ss_pred ccEEEecCeeEEecccCCeeEeEEEEEcCCC-CeEEEEeeeCCCC-----ceEeeCCeeeeCCCCeeEeccc--cC-CCC
Q 027513 8 QLISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTSPK-----KYFVRPNTGVVQPWDSCIIRAQ--RE-SPP 78 (222)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~VaFKVKTT~P~-----~Y~VrP~~Gii~P~~s~~I~~~--~~-~~~ 78 (222)
.-|.++|..+.|.. +.....++|.|.++ .++.........+ -|-|-|+.--|+||+...|.+. .. .|.
T Consensus 21 agv~l~~TRvI~~~---~~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~lP~ 97 (228)
T PRK15208 21 GGVALSSTRVIYDG---SKKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITNTLPQ 97 (228)
T ss_pred ccEEeCceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCCCCCC
Confidence 34788888888886 34578999999986 3444443332221 3999999999999999998833 22 243
Q ss_pred CCCCCCeEEEEEEecCC
Q 027513 79 DMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 79 ~~~~~dKFlVqs~~~~~ 95 (222)
|. ..-|.+....+|+
T Consensus 98 Dr--ESlf~lnv~eIP~ 112 (228)
T PRK15208 98 DR--ESVYWINVKAIPA 112 (228)
T ss_pred Ce--eEEEEEEEEEcCC
Confidence 31 2236666666665
No 27
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=76.74 E-value=38 Score=29.30 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=55.2
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeC--------C----CCceEeeCCeeeeCCCCeeEeccc--c
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTT--------S----PKKYFVRPNTGVVQPWDSCIIRAQ--R 74 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT--------~----P~~Y~VrP~~Gii~P~~s~~I~~~--~ 74 (222)
-|.++...+.|+. +....+++|.|.++++..=..... . ..-|-|-|+.--|+||+...+.+. .
T Consensus 23 gi~l~~TRvIy~~---~~k~~sv~l~N~~~~p~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~~ 99 (234)
T PRK15192 23 GVVIGGTRFIYHA---GAPALSVPVSNHSEASWLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYTG 99 (234)
T ss_pred eEEeCceEEEEcC---CCceEEEEEEeCCCCcEEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEECC
Confidence 4667777888876 455789999999988644333211 1 013999999999999999999833 2
Q ss_pred -CCCCCCCCCCeEEEEEEecCC
Q 027513 75 -ESPPDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 75 -~~~~~~~~~dKFlVqs~~~~~ 95 (222)
..|.| -.--|-+....+|+
T Consensus 100 ~~LP~D--RESlf~lnv~~IPp 119 (234)
T PRK15192 100 APLPAD--RESLFTLSIAAIPS 119 (234)
T ss_pred CCCCCc--ceEEEEEEEEecCC
Confidence 22444 22346666666665
No 28
>PRK00523 hypothetical protein; Provisional
Probab=76.42 E-value=2.8 Score=29.76 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcc
Q 027513 188 FSLMFAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l~~~~~ 212 (222)
-.+.++++++++++++|.+.|+.++
T Consensus 2 ~~~~l~I~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 2 LAIGLALGLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999998764
No 29
>PRK01844 hypothetical protein; Provisional
Probab=76.10 E-value=3.1 Score=29.55 Aligned_cols=23 Identities=17% Similarity=0.657 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 027513 190 LMFAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~~~~ 212 (222)
+.+.++++++++++|.+.|+.++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999998763
No 30
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=75.63 E-value=44 Score=28.86 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=57.8
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCC------CC----ceEeeCCeeeeCCCCeeEeccc-c---
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS------PK----KYFVRPNTGVVQPWDSCIIRAQ-R--- 74 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~------P~----~Y~VrP~~Gii~P~~s~~I~~~-~--- 74 (222)
-|.+++..+.|.. +....+++|.|.++.++.=...... |. -|-|-|+.=-|+||+...|.+. .
T Consensus 11 ~v~l~~TRvI~~~---~~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFAS---DDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcC---CCceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 4778888888886 4567899999999987665554332 11 4999999999999999998833 2
Q ss_pred CCCCCCCCCCeEEEEEEecCC
Q 027513 75 ESPPDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 75 ~~~~~~~~~dKFlVqs~~~~~ 95 (222)
..|.| ..--|-+....+|+
T Consensus 88 ~LP~D--RESlf~lnv~~IP~ 106 (233)
T PRK15246 88 QLATD--RESLFWLNIYQIPP 106 (233)
T ss_pred CCCCC--ceEEEEEEEEEcCC
Confidence 23433 12236666667775
No 31
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.55 E-value=3.3 Score=29.30 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 027513 192 FAAFVGLIGIMVGLIL 207 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l 207 (222)
.+++..|+|+++|||+
T Consensus 9 ~ivl~ll~G~~~G~fi 24 (71)
T COG3763 9 LIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555554
No 32
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=75.47 E-value=11 Score=22.40 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+|..|...|+...++|+..++.||.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57888999999999999999888873
No 33
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=75.17 E-value=7.3 Score=27.01 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
...+..|+.+++.++++|+.|+++++.|+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667888888888888888888887763
No 34
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=75.16 E-value=7.1 Score=29.60 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
...+..+++|+.+++++|+.|++|++.|+
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666677777777777777776665
No 35
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=73.22 E-value=58 Score=28.08 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=54.8
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCC-eEEEEeeeCCC-----CceEeeCCeeeeCCCCeeEeccc--c-CCCCC
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTSP-----KKYFVRPNTGVVQPWDSCIIRAQ--R-ESPPD 79 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~P-----~~Y~VrP~~Gii~P~~s~~I~~~--~-~~~~~ 79 (222)
-+.+++..+.|+. +.....++|+|.+++ +..-....... .-|-|-|+.--|+||+...+.+. . ..|.|
T Consensus 28 gi~l~~TRvIy~~---~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~lP~D 104 (228)
T PRK15188 28 GIALGATRVIYPQ---GSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGPSLPTD 104 (228)
T ss_pred eEEECcEEEEEcC---CCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCCCCCCC
Confidence 4678888888886 355789999999864 44433333211 24999999999999999999832 2 23433
Q ss_pred CCCCCeEEEEEEecCC
Q 027513 80 MQCKDKFLLQSTIVPS 95 (222)
Q Consensus 80 ~~~~dKFlVqs~~~~~ 95 (222)
...-|-+....+|+
T Consensus 105 --RESlf~lnv~~IP~ 118 (228)
T PRK15188 105 --RESVFYLNSKAIPS 118 (228)
T ss_pred --ceEEEEEEEEecCC
Confidence 22346666666665
No 36
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=73.17 E-value=12 Score=25.38 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=28.8
Q ss_pred EEEEcCCCCeEEEE-eeeCCCCceEeeCCeeeeCCCCeeEecccc
Q 027513 31 LKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRAQR 74 (222)
Q Consensus 31 l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~Gii~P~~s~~I~~~~ 74 (222)
|+++|+|..+|.|- ++....++=..-...++|.|+++..+.+..
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEeccC
Confidence 68999999999986 554434432333444599999999998654
No 37
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=72.66 E-value=3.3 Score=28.79 Aligned_cols=17 Identities=12% Similarity=0.522 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027513 192 FAAFVGLIGIMVGLILN 208 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~ 208 (222)
.+++..|+|+++|||+.
T Consensus 2 ~iilali~G~~~Gff~a 18 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIA 18 (64)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45677788888888763
No 38
>PRK10132 hypothetical protein; Provisional
Probab=71.82 E-value=31 Score=26.31 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 027513 188 FSLMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l~ 208 (222)
-||.-+-+.+.+||+||++++
T Consensus 85 ~Pw~svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 85 RPWCSVGTAAAVGIFIGALLS 105 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHh
Confidence 367778888888888888764
No 39
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.56 E-value=11 Score=28.74 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+..|+..+..+.+||..|+-|.+.||.+
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555543
No 40
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=71.32 E-value=15 Score=24.17 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+..|..++..|..+|..|++++..|++
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888888888888888888887764
No 41
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=70.63 E-value=11 Score=36.65 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+.+|..|..+|+.||..|+++++.+-..
T Consensus 311 Lq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 311 LQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 3455556666666666666666655543
No 42
>PRK10404 hypothetical protein; Provisional
Probab=69.76 E-value=22 Score=26.82 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 027513 188 FSLMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l~ 208 (222)
-||.-+-+.+.+||+||++++
T Consensus 79 ~Pw~avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 79 KPWQGIGVGAAVGLVLGLLLA 99 (101)
T ss_pred CcHHHHHHHHHHHHHHHHHHh
Confidence 367777777778888888864
No 43
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=68.76 E-value=18 Score=24.80 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhhcc
Q 027513 197 GLIGIMVGLILNLLLS 212 (222)
Q Consensus 197 ~ll~~llG~~l~~~~~ 212 (222)
.++--+|||+++++++
T Consensus 43 ~~i~G~iGf~Ikli~~ 58 (61)
T PRK09400 43 ILLIGLIGFIIYLIMT 58 (61)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334467888888764
No 44
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=68.23 E-value=3.4 Score=28.16 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 027513 192 FAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~~~ 212 (222)
.+.++.++++++|.+++.+++
T Consensus 19 pl~l~il~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGWLLS 39 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544
No 45
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.21 E-value=18 Score=25.65 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQ 171 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~ 171 (222)
.+|..|+.|+..++++|..|++
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~ 39 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKE 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555554333333
No 46
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=67.68 E-value=15 Score=28.19 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
+..|+..+..+.+||..|+-|-+.||+
T Consensus 24 l~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 24 LGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445444444444443
No 47
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.65 E-value=6.9 Score=27.67 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 027513 189 SLMFAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 189 sl~~~~lv~ll~~llG~~l~~~~~ 212 (222)
++..++++.++++++|.+.|..++
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fia 25 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778999999999999998765
No 48
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=67.50 E-value=58 Score=27.99 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=53.0
Q ss_pred ccEEEecCeeEEecccCCeeEeEEEEEcCCCC-eEEEEeeeCC-----CCceEeeCCeeeeCCCCeeEeccc-cC--CCC
Q 027513 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRAQ-RE--SPP 78 (222)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~-----P~~Y~VrP~~Gii~P~~s~~I~~~-~~--~~~ 78 (222)
.-|.+++..+.|.. +...+.++|.|.+++ +..=..++.. ..-|-|-|+.=-|+||+...|.+. .+ .|.
T Consensus 25 Agi~i~~TRvIy~~---~~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~~LP~ 101 (229)
T PRK15195 25 GGIALGATRVIYPA---DAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGPPLAA 101 (229)
T ss_pred eeEEECCeEEEEeC---CCceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCCCCCC
Confidence 34778888888886 344589999999864 3432222221 125999999999999999999833 22 233
Q ss_pred CCCCCCeEEEEEEecCC
Q 027513 79 DMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 79 ~~~~~dKFlVqs~~~~~ 95 (222)
|. ..-|-+....+|+
T Consensus 102 Dr--ESlf~Lnv~eIP~ 116 (229)
T PRK15195 102 DR--ESLFWMNVKAIPS 116 (229)
T ss_pred Ce--eEEEEEEeeecCC
Confidence 31 2235555555665
No 49
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=66.21 E-value=20 Score=24.41 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
.++.-|++.+..|..+|.+|+.|-..||+...
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35678888888999999999999888887654
No 50
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=65.54 E-value=11 Score=27.22 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=29.4
Q ss_pred eEeEEEEEcCCCCeEEEEeee-----CCCCceEeeCCeeeeCCCCeeEec
Q 027513 27 GFCDLKVINNTEHHVAFKVKT-----TSPKKYFVRPNTGVVQPWDSCIIR 71 (222)
Q Consensus 27 ~~~~l~L~N~s~~~VaFKVKT-----T~P~~Y~VrP~~Gii~P~~s~~I~ 71 (222)
..-.|+|.|.....+.|.|.. ..|..|.| .||++..+.
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~v-------~ag~~~~~~ 62 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYTV-------AAGQTVSLT 62 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEEE-------CCCCEEEEE
Confidence 367999999999999999998 34455554 558887776
No 51
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=65.19 E-value=2.1 Score=37.69 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhc
Q 027513 187 GFSLMFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 187 g~sl~~~~lv~ll~~llG~~l~~~~ 211 (222)
+.++..+++.+|.+++||+++|+++
T Consensus 212 slq~~~iAL~sl~SLVIGFvlG~l~ 236 (273)
T PF02404_consen 212 SLQWPAIALPSLFSLVIGFVLGALY 236 (273)
T ss_dssp -------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667899999999999999985
No 52
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=64.61 E-value=8.5 Score=27.23 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 027513 190 LMFAAFVGLIGIMVGLILNLLLSSPPPTVPQ 220 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~~~~~~~~~~~~ 220 (222)
++.++.|.++|++..|+++. ..++...|+
T Consensus 11 LliaitVilaavv~~~~~~~--~~~~~~~P~ 39 (80)
T PF07790_consen 11 LLIAITVILAAVVGAFVFGL--DSSPESPPQ 39 (80)
T ss_pred HHHHHHHHHHHHHHHHHhcc--cCCCCCCCE
Confidence 44455555556666666555 444444444
No 53
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=64.08 E-value=94 Score=26.69 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=54.4
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCC----------CceEeeCCeeeeCCCCeeEeccc--c-CC
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRAQ--R-ES 76 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P----------~~Y~VrP~~Gii~P~~s~~I~~~--~-~~ 76 (222)
|.++-..+.|+. +....+++|.|.++.++.=....... .-|-|-|+.=.|+||+...+.+. . ..
T Consensus 20 i~l~~TRvIy~~---~~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~~L 96 (226)
T PRK15218 20 IYIYGTRIIYPA---QKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLANNL 96 (226)
T ss_pred EEeCceEEEEcC---CCcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCCCC
Confidence 444445677775 45568999999998875544433322 14999999999999999988732 2 23
Q ss_pred CCCCCCCCeEEEEEEecCCC
Q 027513 77 PPDMQCKDKFLLQSTIVPSN 96 (222)
Q Consensus 77 ~~~~~~~dKFlVqs~~~~~~ 96 (222)
|.| ..--|-+....+|+.
T Consensus 97 P~D--RESlfwlnv~~IPp~ 114 (226)
T PRK15218 97 PGD--RESLFYLNVLDIPPN 114 (226)
T ss_pred Ccc--eeEEEEEEEEEcCCC
Confidence 444 123566666777763
No 54
>smart00338 BRLZ basic region leucin zipper.
Probab=63.99 E-value=22 Score=24.04 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+..|..++..|..+|..|+.++..|+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777666654
No 55
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=63.75 E-value=1e+02 Score=26.87 Aligned_cols=82 Identities=13% Similarity=0.196 Sum_probs=57.6
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCC-CeEEEEeeeCCC-------CceEeeCCeeeeCCCCeeEeccc--cC--C
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTSP-------KKYFVRPNTGVVQPWDSCIIRAQ--RE--S 76 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~VaFKVKTT~P-------~~Y~VrP~~Gii~P~~s~~I~~~--~~--~ 76 (222)
-|.+++..+.|+. +.....++|+|.++ .++.-..+.... .-|-|-|+.--|+||+...|.+. .+ .
T Consensus 38 gv~l~~TRvIy~~---~~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~L 114 (243)
T PRK15290 38 GVVIGGTRVVYLS---NNPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSL 114 (243)
T ss_pred eEEECceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCC
Confidence 4777788888886 45568999999986 567777666521 13999999999999999999832 22 3
Q ss_pred CCCCCCCCeEEEEEEecCC
Q 027513 77 PPDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 77 ~~~~~~~dKFlVqs~~~~~ 95 (222)
|.| -..-|-+....+|+
T Consensus 115 P~D--RESlf~lnv~eIPp 131 (243)
T PRK15290 115 PDD--RESVFWLNIKNIPP 131 (243)
T ss_pred CCC--eeEEEEEEEEEcCC
Confidence 444 22346666666665
No 56
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=62.00 E-value=11 Score=26.11 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027513 190 LMFAAFVGLIGIMVGLILNL 209 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~ 209 (222)
+..+++.|+|.|.+||++.-
T Consensus 7 iQii~l~AlI~~pLGyl~~~ 26 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARR 26 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 44578899999999999764
No 57
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=61.59 E-value=21 Score=25.23 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~l 176 (222)
..+.+++.++..++++|.+|+.|...|
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777766543
No 58
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.11 E-value=24 Score=24.75 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027513 156 KDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 156 ~eE~~~l~~en~~L~~el~~ 175 (222)
.++..+|++|+..|++|++.
T Consensus 46 ~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 46 YEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 59
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=60.93 E-value=64 Score=27.90 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+++.|+.+.+.|+++++.++..|..+
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555555555443
No 60
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.81 E-value=29 Score=23.38 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+..|.+++..+..+|..|+.++..|+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777766666543
No 61
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=60.54 E-value=23 Score=33.79 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHH--HHHHhhh-ccCCCCCCC
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKRRGQRKGVRGFSLMFAAFVGLIGIMV--GLILNLL-LSSPPPTVP 219 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~~~~~~~~~g~sl~~~~lv~ll~~ll--G~~l~~~-~~~~~~~~~ 219 (222)
.|+.+..++..+|+.|.++|..|........+..+..--.++|++++|.+ +++--+= |++|.+|+.
T Consensus 290 eL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~~l~~s~lp~~~~~~~p~~t~~ 358 (472)
T KOG0709|consen 290 ELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSFCLLLSTLPCFSEFSQPITTPL 358 (472)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHHHHhhcccccccCCCCccCc
Confidence 44444445555555555555544433222122223333445555544433 2222221 455555543
No 62
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=60.51 E-value=17 Score=29.55 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027513 162 AVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 162 l~~en~~L~~el~~lr~~ 179 (222)
++++..+|.+|++.+++.
T Consensus 71 l~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555554443
No 63
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=59.43 E-value=54 Score=24.33 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=34.1
Q ss_pred eEEeccc---CCeeEeEEEEEcCCCCeEE-EEeeeCCCCce--EeeCC-eeeeCCCCeeEec
Q 027513 17 LKFIFEL---EKQGFCDLKVINNTEHHVA-FKVKTTSPKKY--FVRPN-TGVVQPWDSCIIR 71 (222)
Q Consensus 17 L~F~~~~---~~~~~~~l~L~N~s~~~Va-FKVKTT~P~~Y--~VrP~-~Gii~P~~s~~I~ 71 (222)
+.|.... .....-.++..|.+..++. |.+.-..|+.| .+.|. ...|+|+..+.-.
T Consensus 13 I~~~~~~~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~ 74 (115)
T PF02883_consen 13 IGFKSEKSPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQV 74 (115)
T ss_dssp EEEEEEECCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEE
T ss_pred EEEEEEecCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEE
Confidence 4444443 5677789999999988776 77777666644 45566 4588887666544
No 64
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.25 E-value=17 Score=34.81 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
...++.++.++..+..||++|++|.++||++.
T Consensus 65 va~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 65 VAEVKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34557888888888899999999988888753
No 65
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=59.09 E-value=35 Score=23.01 Aligned_cols=32 Identities=6% Similarity=0.308 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 148 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 148 ~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..+.+.++...++.++.||+.++++++.+.+.
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777788888888777766543
No 66
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=58.62 E-value=13 Score=28.83 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el 173 (222)
..|..|+.|++.|.+||.+|++|+
T Consensus 96 q~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 96 QHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHh
Confidence 357899999999999999999986
No 67
>COG4499 Predicted membrane protein [Function unknown]
Probab=58.50 E-value=17 Score=34.01 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=31.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhccccCCCCchHHHHH-HHHHHHHHHHHHHhhhccCCC
Q 027513 153 QRLKDERDA-AVRQTQLLQQDLDMLKRRGQRKGVRGFSLMFAA-FVGLIGIMVGLILNLLLSSPP 215 (222)
Q Consensus 153 ~~L~eE~~~-l~~en~~L~~el~~lr~~~~~~~~~g~sl~~~~-lv~ll~~llG~~l~~~~~~~~ 215 (222)
..|.+=++. +++|+++..+.+...++.. -++.=.+.+ +++++.++|+|+.-++||--|
T Consensus 188 d~l~e~i~e~~~kE~e~~~kn~a~VpK~k-----~~ifk~~giGliillvl~li~~~Y~~f~~~p 247 (434)
T COG4499 188 DDLAEFIDEEYQKETEKINKNYAFVPKKK-----YTIFKYFGIGLIILLVLLLIYFTYYYFSNQP 247 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeccccc-----ceehhhHHHhHHHHHHHHHHHHHHHHHHcCh
Confidence 344444443 4455555555444433322 222222333 677777888999988887544
No 68
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.41 E-value=28 Score=24.62 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+..|+++...+.++|..|+++...|+.
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4456666655555555555555544443
No 69
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=58.36 E-value=21 Score=20.79 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Q 027513 190 LMFAAFVGLIGIMVGLILNLLLSS 213 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~~~~~ 213 (222)
+..+.-..++.+++||+.-+||..
T Consensus 3 ~~vi~g~llv~lLl~YLvYAL~na 26 (29)
T PRK14750 3 FSIVCGALLVLLLLGYLVYALFNA 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 334556677788999999998853
No 70
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=58.20 E-value=1.2e+02 Score=26.19 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=55.7
Q ss_pred ccEEEecCeeEEecccCCeeEeEEEEEcCCC-CeEEEEeeeCCC-----CceEeeCCeeeeCCCCeeEeccc-c-----C
Q 027513 8 QLISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTSP-----KKYFVRPNTGVVQPWDSCIIRAQ-R-----E 75 (222)
Q Consensus 8 ~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~VaFKVKTT~P-----~~Y~VrP~~Gii~P~~s~~I~~~-~-----~ 75 (222)
--+.+++..+.|.. +.....++|.|.++ .++.=..+.... .-|.|-|+.--|+||+...|.+. . .
T Consensus 16 A~v~l~~TRvIy~~---~~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~ 92 (239)
T PRK15254 16 AAVNVDRTRIIMDA---PQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDK 92 (239)
T ss_pred EeEEECceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCC
Confidence 34677777888886 45678999999886 465544433211 24999999999999999998842 1 2
Q ss_pred CCCCCCCCCeEEEEEEecCC
Q 027513 76 SPPDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 76 ~~~~~~~~dKFlVqs~~~~~ 95 (222)
.|.| -..-|-+....+|+
T Consensus 93 lP~D--RESlf~lnv~~IP~ 110 (239)
T PRK15254 93 LPQD--RETLFWFNVRGVPP 110 (239)
T ss_pred CCCC--ceEEEEEEEEEcCC
Confidence 2433 22346666666665
No 71
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=57.21 E-value=51 Score=27.13 Aligned_cols=30 Identities=7% Similarity=0.124 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
....|++.+..+++|.+.|+++...+.++.
T Consensus 58 ~~~~l~~~l~~~~~el~~le~~k~~id~~A 87 (180)
T PF04678_consen 58 RERQLRKRLEELRQELAPLEKIKQEIDEKA 87 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777666555544443
No 72
>PRK14127 cell division protein GpsB; Provisional
Probab=56.80 E-value=32 Score=26.40 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
.+..+.+|+..|++++.+|++++..++.+.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666777777777777777777766543
No 73
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=56.64 E-value=1.3e+02 Score=26.03 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=52.0
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeee--C--C---CCceEeeCCeeeeCCCCeeEeccc--c-CCCCC
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKT--T--S---PKKYFVRPNTGVVQPWDSCIIRAQ--R-ESPPD 79 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKT--T--~---P~~Y~VrP~~Gii~P~~s~~I~~~--~-~~~~~ 79 (222)
|.++-..+.|+. +....+++|.|.++.+ |=|++ . . ..-|-|-|+.=.|+|++...|.+. . ..|.|
T Consensus 30 v~l~~TRvIy~~---~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~~LP~D 104 (237)
T PRK15224 30 VKLGATRVIYHA---GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTD 104 (237)
T ss_pred EEeCceEEEEeC---CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCCCCCCc
Confidence 344444677775 4456899999998876 44444 1 1 113999999999999999998833 2 23444
Q ss_pred CCCCCeEEEEEEecCC
Q 027513 80 MQCKDKFLLQSTIVPS 95 (222)
Q Consensus 80 ~~~~dKFlVqs~~~~~ 95 (222)
. .--|-+....+|+
T Consensus 105 R--ESlFwlnv~~IPp 118 (237)
T PRK15224 105 R--ETLQWVCIKAVPP 118 (237)
T ss_pred e--eEEEEEEEEEcCC
Confidence 2 2346666666776
No 74
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.62 E-value=1.3e+02 Score=25.88 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=61.8
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCC-------CCceEeeCCeeeeCCCCeeEeccc--c-CCCC
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRAQ--R-ESPP 78 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~-------P~~Y~VrP~~Gii~P~~s~~I~~~--~-~~~~ 78 (222)
-+.+.+..+.|+. +.....++|.|.++.++.-.++.-. ..-|-|-|..=.|+||+...|.+. . ..|.
T Consensus 28 ~v~i~~TRiI~~~---~~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~~lP~ 104 (235)
T COG3121 28 GVVLGGTRIIYPA---GDKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGNKLPA 104 (235)
T ss_pred eEEecceEEEEeC---CCceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCCCCCC
Confidence 4667777888887 3557899999988999999977662 346999999999999999988832 3 3354
Q ss_pred CCCCCCeEEEEEEecCCC
Q 027513 79 DMQCKDKFLLQSTIVPSN 96 (222)
Q Consensus 79 ~~~~~dKFlVqs~~~~~~ 96 (222)
| ...-|-+..-.+|+.
T Consensus 105 d--rEslf~lnv~eIPp~ 120 (235)
T COG3121 105 D--RESLFRLNVDEIPPK 120 (235)
T ss_pred C--ceeEEEEEeeecCCC
Confidence 4 235666766677654
No 75
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=56.61 E-value=27 Score=26.62 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
+.+..+..|.+|-.+|+-||.+|++.+..+.+
T Consensus 26 ~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 26 ELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999999999999999887755
No 76
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=56.44 E-value=38 Score=25.76 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 027513 188 FSLMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l~ 208 (222)
-||.-+-+.+-+||+||.+++
T Consensus 82 ~PWq~VGvaAaVGlllGlLls 102 (104)
T COG4575 82 NPWQGVGVAAAVGLLLGLLLS 102 (104)
T ss_pred CCchHHHHHHHHHHHHHHHHh
Confidence 367777777778888887764
No 77
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=56.38 E-value=28 Score=29.66 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCC
Q 027513 192 FAAFVGLIGIMVGLILNLLLSSPPPT 217 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~~~~~~~~ 217 (222)
+.++.++|..++||+...||=+|...
T Consensus 31 yt~FL~~L~~~i~~~~y~lf~~~~~~ 56 (207)
T PF03907_consen 31 YTFFLSLLCLWIAFFFYALFFRPRED 56 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCChhh
Confidence 44445555666677777777776543
No 78
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=56.06 E-value=25 Score=25.97 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCeeEeEEEEEcCCCCeEE-EEeeeCCC-----------------CceEeeCCe--eeeCCCCeeEec
Q 027513 24 EKQGFCDLKVINNTEHHVA-FKVKTTSP-----------------KKYFVRPNT--GVVQPWDSCIIR 71 (222)
Q Consensus 24 ~~~~~~~l~L~N~s~~~Va-FKVKTT~P-----------------~~Y~VrP~~--Gii~P~~s~~I~ 71 (222)
+..-...|+|+|.++.++. ++|.=+-| ..|.|+|.. +.|+||+++.+-
T Consensus 12 ~~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~G 79 (101)
T PF00553_consen 12 GGGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFG 79 (101)
T ss_dssp SSEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEE
T ss_pred CCCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEE
Confidence 3445667888888877652 44333333 567777654 688888888776
No 79
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=55.51 E-value=27 Score=23.82 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQD 172 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~e 172 (222)
..+..|.+|.+..+++..||..|++-
T Consensus 18 vLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 18 VLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999874
No 80
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=55.46 E-value=28 Score=26.70 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
+.+..+..|.+|...|+-||.+|++.+..+..
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44678899999999999999999999887743
No 81
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.96 E-value=15 Score=24.92 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr 177 (222)
+++.+..+++++++++++|++.+|
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566667777777777777776654
No 82
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=54.45 E-value=34 Score=25.40 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=34.0
Q ss_pred CCeeEeEEEEEcCCCCeEE-----EEeeeCCCCceEeeC---------CeeeeCCCCeeEeccccCCCCC
Q 027513 24 EKQGFCDLKVINNTEHHVA-----FKVKTTSPKKYFVRP---------NTGVVQPWDSCIIRAQRESPPD 79 (222)
Q Consensus 24 ~~~~~~~l~L~N~s~~~Va-----FKVKTT~P~~Y~VrP---------~~Gii~P~~s~~I~~~~~~~~~ 79 (222)
.+-..-.++++|.++.++. |++.+..-..|.... ..+-|.||++++-.+-++.|.+
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~ 104 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKD 104 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCC
Confidence 3455679999999998776 688877766766443 4578999999988866655544
No 83
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=54.15 E-value=23 Score=32.85 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=22.9
Q ss_pred CCeeEeEEEEEcCCCCeEEEEeeeCCCCc
Q 027513 24 EKQGFCDLKVINNTEHHVAFKVKTTSPKK 52 (222)
Q Consensus 24 ~~~~~~~l~L~N~s~~~VaFKVKTT~P~~ 52 (222)
++..+-+++++|.++++|-.+==+|+.-+
T Consensus 281 GR~l~~~~~VTN~g~~~vrlgEF~TA~vR 309 (399)
T TIGR03079 281 GRALRVTMEITNNGDQVISIGEFTTAGIR 309 (399)
T ss_pred CcEEEEEEEEEcCCCCceEEEeEeecceE
Confidence 57888999999999999988755555443
No 84
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=54.12 E-value=29 Score=26.53 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..+.+|+.+|.+++.+|+.|.+.|++.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666666666666543
No 85
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=54.03 E-value=75 Score=22.39 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027513 190 LMFAAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~~ 210 (222)
.+.+++.+++|+++|..+-++
T Consensus 59 ~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 59 ALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777665443
No 86
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.62 E-value=64 Score=27.88 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 027513 188 FSLMFAAFVGLIGIMVGLILNLLLSSPPPT 217 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l~~~~~~~~~~ 217 (222)
.|....+.+.++|+|-.|+++-||.-++++
T Consensus 200 WS~vq~~vmi~v~~iQVf~lrslFe~~~~~ 229 (236)
T KOG3287|consen 200 WSMVQTLVMILVGIIQVFMLRSLFEVKSKS 229 (236)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHhcCCCCc
Confidence 456777888899999999999999877654
No 87
>PRK14127 cell division protein GpsB; Provisional
Probab=53.56 E-value=39 Score=25.91 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
|....+..+.++...+.+||..|++++.+|+.+.
T Consensus 27 EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l 60 (109)
T PRK14127 27 EVDKFLDDVIKDYEAFQKEIEELQQENARLKAQV 60 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777777777777666553
No 88
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=53.39 E-value=15 Score=23.89 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027513 190 LMFAAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~~ 210 (222)
-..-++..++|+.|||...--
T Consensus 26 ~q~~ll~vllsIalGylvs~F 46 (48)
T PF06612_consen 26 RQARLLIVLLSIALGYLVSSF 46 (48)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 344577788899999987643
No 89
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=52.94 E-value=15 Score=31.98 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccC
Q 027513 188 FSLMFAAFVGLIGIMVGLILNLLLSS 213 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l~~~~~~ 213 (222)
.++++-++.++||++.||+.+++|..
T Consensus 210 ~~~lYGl~av~iAi~~Gw~a~~iFrr 235 (236)
T PF09608_consen 210 QPLLYGLLAVLIAIFAGWLASAIFRR 235 (236)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHccC
Confidence 45889999999999999999999963
No 90
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=52.80 E-value=75 Score=25.99 Aligned_cols=18 Identities=6% Similarity=0.421 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027513 190 LMFAAFVGLIGIMVGLIL 207 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l 207 (222)
+++-++++++|+++||+-
T Consensus 157 ~~~g~i~~~~a~~la~~r 174 (177)
T PF07798_consen 157 WLVGVIFGCVALVLAILR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344466777788888763
No 91
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=52.74 E-value=32 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 155 LKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 155 L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
...++..+..||..|+.++..+|.
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667777888888888877664
No 92
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.22 E-value=27 Score=27.66 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
.|..+++.|.+|.++|++|...+++..
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666665543
No 93
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=52.07 E-value=34 Score=23.38 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 155 LKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 155 L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
+.+|+.++..+..+++.++..+.++.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777665
No 94
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=51.62 E-value=32 Score=25.74 Aligned_cols=29 Identities=7% Similarity=0.213 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
..+..|.+.++.+..+|.+|.+++..+|+
T Consensus 80 ~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 80 KEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678889999999999999999888774
No 95
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.60 E-value=47 Score=22.34 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
...+..|..+...|..++..|+++...|+..
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677777778888888888777777654
No 96
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=51.57 E-value=94 Score=22.77 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+..|++++..+.++...++.++..++.+
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777766654
No 97
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=51.44 E-value=40 Score=24.84 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+.+.+|..++..+.+||.+|+.+++.-|..
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777665544
No 98
>smart00637 CBD_II CBD_II domain.
Probab=51.09 E-value=47 Score=23.82 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=15.4
Q ss_pred ceEeeCCe--eeeCCCCeeEec
Q 027513 52 KYFVRPNT--GVVQPWDSCIIR 71 (222)
Q Consensus 52 ~Y~VrP~~--Gii~P~~s~~I~ 71 (222)
.|.|+|.. +.|.||+++.+-
T Consensus 51 ~~~~~~~~wn~~i~~G~s~~~g 72 (92)
T smart00637 51 HVTATNASWNGTIAPGGSVSFG 72 (92)
T ss_pred EEEEecCccccccCCCCEEEEE
Confidence 68888644 788888888776
No 99
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.55 E-value=37 Score=25.61 Aligned_cols=29 Identities=21% Similarity=0.126 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
..++++++..++++|++|+++.+.|+...
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666777766666666554
No 100
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=50.52 E-value=64 Score=23.59 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=31.6
Q ss_pred EEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEecc
Q 027513 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRA 72 (222)
Q Consensus 11 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~ 72 (222)
..+|++++.+. .....|+++|..+....|-+.. +.+ ...|.||++..+.+
T Consensus 31 ~f~P~~i~v~~----G~~v~l~~~N~~~~~h~~~i~~-----~~~---~~~l~~g~~~~~~f 80 (104)
T PF13473_consen 31 GFSPSTITVKA----GQPVTLTFTNNDSRPHEFVIPD-----LGI---SKVLPPGETATVTF 80 (104)
T ss_dssp EEES-EEEEET----TCEEEEEEEE-SSS-EEEEEGG-----GTE---EEEE-TT-EEEEEE
T ss_pred eEecCEEEEcC----CCeEEEEEEECCCCcEEEEECC-----Cce---EEEECCCCEEEEEE
Confidence 46777777664 3345699999998888888877 112 26789999988874
No 101
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=50.32 E-value=22 Score=24.33 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 027513 192 FAAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~ 210 (222)
.+++++++|.++|+|+-.+
T Consensus 41 ~~~~~c~~S~~lG~~~~~~ 59 (60)
T PF06072_consen 41 AVVALCVLSGGLGALVAWH 59 (60)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3457788888888887543
No 102
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=50.25 E-value=8.1 Score=29.22 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 027513 189 SLMFAAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 189 sl~~~~lv~ll~~llG~~l~~~ 210 (222)
|++|++=.+|=|.+|||+++..
T Consensus 68 SLLFaLQAAiGAgiIgY~lG~~ 89 (100)
T PRK02898 68 SLLFALQAALGAGIIGYILGYY 89 (100)
T ss_pred HHHHHHHHHHhhhhhheeeeeh
Confidence 6899999999999999998864
No 103
>smart00338 BRLZ basic region leucin zipper.
Probab=50.00 E-value=56 Score=21.99 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 148 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 148 ~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
....+..|..+...|..++..|+.|+..|+..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888887777654
No 104
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=49.65 E-value=20 Score=25.52 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 027513 191 MFAAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~~ 210 (222)
..+++.+++|+++||+..-+
T Consensus 15 ~il~~~~iisfi~Gy~~q~~ 34 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQSF 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888876543
No 105
>COG3771 Predicted membrane protein [Function unknown]
Probab=49.30 E-value=20 Score=26.49 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=19.1
Q ss_pred CCchH-HHHHHHHHHHHHHHHHHhhhc
Q 027513 186 RGFSL-MFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 186 ~g~sl-~~~~lv~ll~~llG~~l~~~~ 211 (222)
+.|.+ ..+..++.+|+++||++-.+|
T Consensus 37 gef~LSTLla~lF~~G~~lgwli~g~f 63 (97)
T COG3771 37 GEFRLSTLLATLFAAGFALGWLICGLF 63 (97)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544 345677788999999998876
No 106
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.78 E-value=48 Score=23.98 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 148 ANSALQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 148 ~~~~i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
|..+|.-|+=|+..++++|..|.++.+.
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655555443
No 107
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=48.59 E-value=28 Score=23.07 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Q 027513 191 MFAAFVGLIGIMVGLILNLLLSSP 214 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~~~~~~ 214 (222)
..++++++++++++|++.--+..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~~p 26 (70)
T PF00672_consen 3 VLFLIILLLSLLLAWLLARRITRP 26 (70)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888877666555
No 108
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.31 E-value=50 Score=23.43 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el 173 (222)
.+|.-|+-|+..|++.|..|.+|.
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~ 41 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHH
Confidence 445555555555555555555444
No 109
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=48.26 E-value=51 Score=26.12 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..|..|+.+|.+||.+++.|++.++.+
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888888777754
No 110
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=48.24 E-value=36 Score=26.52 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el 173 (222)
.+.+|.+|+.+|+-||..|++.+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl 26 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKL 26 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999864
No 111
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=48.23 E-value=27 Score=24.29 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=28.4
Q ss_pred CCeeEeEEEEEcCCCCeE-EEEeeeCCCCceE--eeCCee-eeCCCCeeEeccc
Q 027513 24 EKQGFCDLKVINNTEHHV-AFKVKTTSPKKYF--VRPNTG-VVQPWDSCIIRAQ 73 (222)
Q Consensus 24 ~~~~~~~l~L~N~s~~~V-aFKVKTT~P~~Y~--VrP~~G-ii~P~~s~~I~~~ 73 (222)
++..+-.++++|..+.++ ..++.-..|.-+. +.|... -|.||+++.+.+.
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~ 57 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFT 57 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEE
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEE
Confidence 456678899999886543 2455555588766 555553 6999999988833
No 112
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=48.06 E-value=1.8e+02 Score=25.14 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=58.5
Q ss_pred CccEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeee---CCC---------------CceEeeCCeeeeCCCCee
Q 027513 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKT---TSP---------------KKYFVRPNTGVVQPWDSC 68 (222)
Q Consensus 7 ~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKT---T~P---------------~~Y~VrP~~Gii~P~~s~ 68 (222)
.--|.|.|-.+.+... .+..+.++|+|.++.+..++|.. ++| ..-.+.|..-.|.||++.
T Consensus 15 aa~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q 92 (234)
T PRK15308 15 RANMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTR 92 (234)
T ss_pred hceEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeE
Confidence 3457889987777641 25578999999999888777642 121 246788999999999999
Q ss_pred Eeccc-cCCCCCCCCCCeEEEEEEecCCC
Q 027513 69 IIRAQ-RESPPDMQCKDKFLLQSTIVPSN 96 (222)
Q Consensus 69 ~I~~~-~~~~~~~~~~dKFlVqs~~~~~~ 96 (222)
.|.+- .. +++ ...-|.|...+++..
T Consensus 93 ~IRli~lg-~~~--kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 93 TVRVISLQ-APE--REEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEEEcC-CCC--cEEEEEEEEEecCCc
Confidence 99833 22 222 234577777777653
No 113
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=47.66 E-value=19 Score=34.89 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 027513 188 FSLMFAAFVGLIGIMVGLILNLLLSSPPPT 217 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l~~~~~~~~~~ 217 (222)
.-++.+++++|+++|+++|-++.|.+|.-.
T Consensus 479 ~LWIsvAliVLLAaLlSfLtg~~fq~~vda 508 (538)
T PF05781_consen 479 VLWISVALIVLLAALLSFLTGLFFQRCVDA 508 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhcc
Confidence 346777888999999999999999887543
No 114
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=47.65 E-value=35 Score=19.88 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 027513 192 FAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~~~ 212 (222)
.++-+.++.+++||+.-+|+.
T Consensus 5 vi~G~ilv~lLlgYLvyALi~ 25 (29)
T PRK14748 5 VITGVLLVFLLLGYLVYALIN 25 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 345556667889999988875
No 115
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=47.52 E-value=1.2e+02 Score=23.03 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAA---VRQTQLLQQDLD 174 (222)
Q Consensus 151 ~i~~L~eE~~~l---~~en~~L~~el~ 174 (222)
.+.+|.+|..+- .+|-+++++|++
T Consensus 44 qL~ELe~d~~~G~l~~~e~~~~~~El~ 70 (117)
T TIGR03142 44 RLAELERDLAEGLLDEAEAEAARAELQ 70 (117)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 445555554431 234556666664
No 116
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=47.39 E-value=1.9e+02 Score=25.10 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=53.5
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCC----------CceEeeCCeeeeCCCCeeEeccc--c-CC
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRAQ--R-ES 76 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P----------~~Y~VrP~~Gii~P~~s~~I~~~--~-~~ 76 (222)
|.++-..+.|+. +....+++|.|.++.++.=..+.... .-|-|-|+.=.|+|++...|.+. . ..
T Consensus 35 v~l~~TRvIy~~---~~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~~L 111 (242)
T PRK15253 35 IVIYGTRVIYPA---EKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPNSL 111 (242)
T ss_pred EEeCceEEEEeC---CCceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCCCC
Confidence 444444677775 34568999999998875544433221 14999999999999999988832 2 23
Q ss_pred CCCCCCCCeEEEEEEecCC
Q 027513 77 PPDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 77 ~~~~~~~dKFlVqs~~~~~ 95 (222)
|.| -.--|-+....+|+
T Consensus 112 P~D--RESlfwlnv~~IPp 128 (242)
T PRK15253 112 PDN--KESLFYLNVLDIPP 128 (242)
T ss_pred Ccc--eeEEEEEEEEEcCC
Confidence 433 22346666666776
No 117
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=47.22 E-value=87 Score=23.67 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 027513 194 AFVGLIGIMVGLILNLL 210 (222)
Q Consensus 194 ~lv~ll~~llG~~l~~~ 210 (222)
..++|.|+++|-+.--|
T Consensus 54 Tgl~L~~~v~gIY~YTi 70 (100)
T PF09813_consen 54 TGLALGAFVVGIYAYTI 70 (100)
T ss_pred HHHHHHHHHHHHHhhee
Confidence 34455556666554433
No 118
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=46.87 E-value=69 Score=23.53 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=36.3
Q ss_pred cCCeeEeEEEEEcCCCCe--------EEEEeeeCCCC--ceEeeCCeeeeCCCCeeEecc
Q 027513 23 LEKQGFCDLKVINNTEHH--------VAFKVKTTSPK--KYFVRPNTGVVQPWDSCIIRA 72 (222)
Q Consensus 23 ~~~~~~~~l~L~N~s~~~--------VaFKVKTT~P~--~Y~VrP~~Gii~P~~s~~I~~ 72 (222)
.++.....++++|+++.+ -++-|--|--- ....+-..+-|.||++..+.+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~ 72 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEV 72 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEE
Confidence 467889999999999877 56666655433 256778899999999999883
No 119
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=46.70 E-value=56 Score=31.94 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
.+..|+.-++++.+||++|+.|-..||++..
T Consensus 303 y~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 303 YMLGLEARLQALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3456777788899999999999999998754
No 120
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=46.55 E-value=26 Score=22.88 Aligned_cols=25 Identities=12% Similarity=0.394 Sum_probs=17.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhc
Q 027513 187 GFSLMFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 187 g~sl~~~~lv~ll~~llG~~l~~~~ 211 (222)
||-++..++++.++.++.+++|.|+
T Consensus 12 ~F~~lIC~Fl~~~~~F~~F~~Kqil 36 (54)
T PF06716_consen 12 AFGFLICLFLFCLVVFIWFVYKQIL 36 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777888888888765
No 121
>PHA03155 hypothetical protein; Provisional
Probab=46.54 E-value=30 Score=26.74 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el 173 (222)
.+.+|.+|+.+|+-||..|++.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999965
No 122
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=46.50 E-value=52 Score=25.28 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+.++.|++-+.++.+||..|+=|.+.||++
T Consensus 22 ~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 22 AELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 344555555566666666666666666654
No 123
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=46.15 E-value=50 Score=21.54 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQ 171 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~ 171 (222)
.+..|.++...|.+++..|+.
T Consensus 33 ~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 33 EVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444443
No 124
>PHA03162 hypothetical protein; Provisional
Probab=45.48 E-value=31 Score=27.36 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el 173 (222)
.+.+|.+|+.+|+-||..|++.+
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999965
No 125
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.70 E-value=42 Score=27.08 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
+....|..|++++..+..++..|+.|+..|+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566666666666666666666665544
No 126
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.30 E-value=64 Score=22.10 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
+..+..++..+..++++++++.+.|++..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666665543
No 127
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=43.75 E-value=42 Score=24.04 Aligned_cols=10 Identities=10% Similarity=0.218 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 027513 167 QLLQQDLDML 176 (222)
Q Consensus 167 ~~L~~el~~l 176 (222)
+.|+++-...
T Consensus 41 ~~L~~~a~~F 50 (89)
T PF00957_consen 41 EELSDNAKQF 50 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhHHH
Confidence 3344433333
No 128
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=42.85 E-value=38 Score=23.04 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCC
Q 027513 192 FAAFVGLIGIMVGLILNLLLSSPPP 216 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~~~~~~~ 216 (222)
.+++++|+++..|.|++.+.++-++
T Consensus 12 Vi~l~vl~~~~Ftl~IRri~~~s~~ 36 (58)
T PF13314_consen 12 VIILIVLFGASFTLFIRRILINSNA 36 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3466667777777888888776544
No 129
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.69 E-value=87 Score=21.16 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~l 176 (222)
+|..++..|..+..+|.++...+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333
No 130
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.49 E-value=84 Score=21.71 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
..|..|.+.+.+..+++.+|+.++..|+.+..
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777888888888888876643
No 131
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=42.43 E-value=74 Score=24.50 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
++.-|++.+..|.+.|.+|++|-..||...
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445666666666667777777776666543
No 132
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=42.36 E-value=9.2 Score=30.22 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=3.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhc
Q 027513 186 RGFSLMFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 186 ~g~sl~~~~lv~ll~~llG~~l~~~~ 211 (222)
..++++.++++++++++=-|+|+-+|
T Consensus 157 ~~~si~~~~vli~~~~~Qv~~lk~~f 182 (183)
T PF01105_consen 157 MWWSIIQIVVLILVSVWQVYYLKKFF 182 (183)
T ss_dssp ---------------------HHHHH
T ss_pred EhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777777665
No 133
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=41.85 E-value=67 Score=26.41 Aligned_cols=67 Identities=12% Similarity=0.223 Sum_probs=47.5
Q ss_pred eeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEec-cccCCCCCCCCCCeEEEEEEecCCC
Q 027513 26 QGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR-AQRESPPDMQCKDKFLLQSTIVPSN 96 (222)
Q Consensus 26 ~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~-~~~~~~~~~~~~dKFlVqs~~~~~~ 96 (222)
..+...-|.|-|+..+-|-.-+...+.|.+| +.|.|+|+..+-|. ...+. .....+..||.+.--.+
T Consensus 17 ~T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~e---LN~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 17 TTRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKEE---LNDLERVAVQLIAYKKD 84 (162)
T ss_dssp T--EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GGG---GGG-SSEEEEEEEE-SS
T ss_pred CCceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHHH---hhccceeEEEEEEEcCC
Confidence 3456788999999999999999998899998 78999999999887 33321 11346778888776554
No 134
>PRK00295 hypothetical protein; Provisional
Probab=41.36 E-value=80 Score=21.90 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+|..|.+.+.+..+++..|+.++..|+.+
T Consensus 19 ~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 19 DTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777888777766544
No 135
>PHA00094 VI minor coat protein
Probab=41.36 E-value=38 Score=26.06 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhh
Q 027513 187 GFSLMFAAFVGLIGIMVGLILNL 209 (222)
Q Consensus 187 g~sl~~~~lv~ll~~llG~~l~~ 209 (222)
|.+.+.-.+.+|+..++|||.+.
T Consensus 6 GIPaL~rfi~~la~~~~gyfa~f 28 (112)
T PHA00094 6 GIPALARFLGTLAANLIGYFAKF 28 (112)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555443
No 136
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=41.25 E-value=57 Score=28.74 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..|..|.+.|+.++.+|++|+..+|+.
T Consensus 224 ~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 224 VAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888777764
No 137
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=41.23 E-value=32 Score=20.14 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=6.0
Q ss_pred CCCCchHHHHHHHHHHH
Q 027513 184 GVRGFSLMFAAFVGLIG 200 (222)
Q Consensus 184 ~~~g~sl~~~~lv~ll~ 200 (222)
.+.||++.=++++..|.
T Consensus 12 ~~~GFTLiEllVa~~I~ 28 (31)
T PF13544_consen 12 RQRGFTLIELLVAMAIL 28 (31)
T ss_dssp ------HHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHH
Confidence 46899987664444443
No 138
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=41.06 E-value=79 Score=27.27 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------cCCCCchHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRRGQR--------------KGVRGFSLMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~~~~--------------~~~~g~sl~~~~lv~ll~~llG~~l~ 208 (222)
..+++|++++.++.-...++|..+..++.+.-. .+-.||.-.++|.+.|+|.+--|+++
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llgs~slymfr 87 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLGSGSLYMFR 87 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhHHHHHH
Confidence 345566666666666666666666655543210 12355655566666666643334444
No 139
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=41.04 E-value=53 Score=28.82 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQT 166 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en 166 (222)
.|..|.||-..|+.||
T Consensus 98 ~i~dL~een~~L~~en 113 (292)
T KOG4005|consen 98 EIKDLTEENEILQNEN 113 (292)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 140
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.89 E-value=70 Score=26.25 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.-+.|.+|+..++++|+.|+.|+..|.+.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566677777777777777777666554
No 141
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=40.83 E-value=41 Score=30.85 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
..|++|..+|++||+.|+.|+.+|.
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777666654
No 142
>PRK04406 hypothetical protein; Provisional
Probab=40.68 E-value=80 Score=22.41 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
..|..|.+.+.+..+++..|+.++..|+.+.
T Consensus 25 ~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 25 QTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777888888887775543
No 143
>PHA02414 hypothetical protein
Probab=40.49 E-value=1.6e+02 Score=22.26 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHHHHHHh
Q 027513 160 DAAVRQTQLLQQDLDMLKRRGQRKGVRGFSLMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 160 ~~l~~en~~L~~el~~lr~~~~~~~~~g~sl~~~~lv~ll~~llG~~l~ 208 (222)
+.+-=|+.+|.+-...|+...++...+---+.-=+++.+||-++-|.|.
T Consensus 60 shi~yQi~~Lee~i~aL~~~n~ked~~KkD~vEkVfmivLGAvvtyVFs 108 (111)
T PHA02414 60 SHIYYQIERLEEKISALAESNKKEDTEKKDTVEKVFMIVLGAVVTYVFS 108 (111)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344577888888888887665422222223333444455555555553
No 144
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=40.46 E-value=14 Score=22.69 Aligned_cols=8 Identities=0% Similarity=0.289 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027513 194 AFVGLIGI 201 (222)
Q Consensus 194 ~lv~ll~~ 201 (222)
++++++|+
T Consensus 22 llifvl~v 29 (37)
T PF02419_consen 22 LLIFVLAV 29 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 145
>PF09489 CbtB: Probable cobalt transporter subunit (CbtB); InterPro: IPR012667 This entry represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems []. Evidence for this assignment includes 1) prediction of a single transmembrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional transmembrane segments.
Probab=40.31 E-value=42 Score=22.48 Aligned_cols=21 Identities=24% Similarity=0.437 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 027513 189 SLMFAAFVGLIGIMVGLILNL 209 (222)
Q Consensus 189 sl~~~~lv~ll~~llG~~l~~ 209 (222)
.+..+++.+++|++|+|+.++
T Consensus 12 ~~~~~~~a~~lg~~l~~~~gf 32 (54)
T PF09489_consen 12 RLVQAAAAALLGLLLLYFVGF 32 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 477788888999999998875
No 146
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.24 E-value=1.2e+02 Score=25.65 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhcccc-------CCCCchHHHHHHHHHHHHHHHHHHhhhcc
Q 027513 154 RLKDERDAAVRQT--QLLQQDLDMLKRRGQRK-------GVRGFSLMFAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 154 ~L~eE~~~l~~en--~~L~~el~~lr~~~~~~-------~~~g~sl~~~~lv~ll~~llG~~l~~~~~ 212 (222)
+|.+.+++|.+-. -+-+||....|.+.++. +.-..+++-.++++..+++=-|+|+-+|+
T Consensus 129 ~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFE 196 (201)
T KOG1692|consen 129 KLEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFE 196 (201)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 4555555555433 34456666666554421 22335566677777778888899998886
No 147
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.23 E-value=26 Score=25.00 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 027513 193 AAFVGLIGIMVGLILN 208 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~ 208 (222)
+++.+++++-|||+++
T Consensus 10 ~Fllvi~gMsiG~I~k 25 (77)
T COG2991 10 IFLLVIAGMSIGYIFK 25 (77)
T ss_pred HHHHHHHHHhHhhhee
Confidence 3556667778888875
No 148
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=40.23 E-value=2.5e+02 Score=24.49 Aligned_cols=81 Identities=10% Similarity=0.084 Sum_probs=50.9
Q ss_pred EEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCC-----CceEeeCCeeeeCCCCeeEeccc--c-CCCCCCCC
Q 027513 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP-----KKYFVRPNTGVVQPWDSCIIRAQ--R-ESPPDMQC 82 (222)
Q Consensus 11 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P-----~~Y~VrP~~Gii~P~~s~~I~~~--~-~~~~~~~~ 82 (222)
.++-..+.|+. +....+++|.|.++.++.=..+.... .-|-|-|+.=.|+|++...+.+. . ..|.|.
T Consensus 43 ~l~~TRvIy~~---~~~~~sl~i~N~~~~p~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~~LP~DR-- 117 (246)
T PRK15233 43 RLGTTRVIYKE---DAPSTSFWIMNEKEYPILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSNLFNKNE-- 117 (246)
T ss_pred EeCceEEEEeC---CCcEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCCCCCcCc--
Confidence 33333566664 34578999999887774433322211 14999999999999999988833 2 234331
Q ss_pred CCeEEEEEEecCCC
Q 027513 83 KDKFLLQSTIVPSN 96 (222)
Q Consensus 83 ~dKFlVqs~~~~~~ 96 (222)
.--|-+....+|+.
T Consensus 118 ESlfwlnv~~IPp~ 131 (246)
T PRK15233 118 ESLYWLCVKGVPPL 131 (246)
T ss_pred eEEEEEEEEEcCCC
Confidence 12366666677763
No 149
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=40.22 E-value=1.4e+02 Score=21.48 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=34.3
Q ss_pred CCeeEeEEEEEcCCCCeEE-EEeeeCCCCceEee--CCee-eeCCCCeeEe
Q 027513 24 EKQGFCDLKVINNTEHHVA-FKVKTTSPKKYFVR--PNTG-VVQPWDSCII 70 (222)
Q Consensus 24 ~~~~~~~l~L~N~s~~~Va-FKVKTT~P~~Y~Vr--P~~G-ii~P~~s~~I 70 (222)
+....-.+...|.+..++. |.+.-..|+-+.++ |..| .|.||+.+.-
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q 67 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQ 67 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEE
Confidence 3567788999999987776 88888888866655 5544 7888876433
No 150
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=40.22 E-value=25 Score=29.02 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 157 DERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 157 eE~~~l~~en~~L~~el~~lr~ 178 (222)
+|+..|+.++++|++|+-.||+
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHHHHHHCH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666544443
No 151
>COG4640 Predicted membrane protein [Function unknown]
Probab=40.05 E-value=29 Score=32.56 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 027513 190 LMFAAFVGLIGIMVGLILNLLLSSPPPTV 218 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~~~~~~~~~~ 218 (222)
++..+++++|-+++-|+++..||||.+.|
T Consensus 54 ~was~a~~lIlii~~~~fgk~fssp~~~v 82 (465)
T COG4640 54 PWASGAFILILIIILFFFGKNFSSPEAQV 82 (465)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 33446666777888899999999998654
No 152
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=39.55 E-value=52 Score=20.64 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=5.7
Q ss_pred HHHHHHHHHHh
Q 027513 198 LIGIMVGLILN 208 (222)
Q Consensus 198 ll~~llG~~l~ 208 (222)
+.++++|.+++
T Consensus 15 vma~ilglIyG 25 (41)
T PF10766_consen 15 VMALILGLIYG 25 (41)
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 153
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.49 E-value=87 Score=21.97 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..|..|.+.+.+..+++..|+.++..|+.+
T Consensus 22 ~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 22 ITIEELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777788888887776554
No 154
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=39.22 E-value=72 Score=24.60 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=23.8
Q ss_pred EecccCCeeEeEEEEEcCCCCeEEEEeeeC
Q 027513 19 FIFELEKQGFCDLKVINNTEHHVAFKVKTT 48 (222)
Q Consensus 19 F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT 48 (222)
+.-..+...+-.++|+|.+++.+.|+|.-.
T Consensus 21 L~~~P~q~~~l~v~i~N~s~~~~tv~v~~~ 50 (121)
T PF06030_consen 21 LKVKPGQKQTLEVRITNNSDKEITVKVSAN 50 (121)
T ss_pred EEeCCCCEEEEEEEEEeCCCCCEEEEEEEe
Confidence 334556777889999999999999988654
No 155
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=39.09 E-value=21 Score=22.10 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=4.6
Q ss_pred HHHHHhhhccC
Q 027513 203 VGLILNLLLSS 213 (222)
Q Consensus 203 lG~~l~~~~~~ 213 (222)
+-+.++.||||
T Consensus 25 lifvl~vLFss 35 (39)
T PRK00753 25 LVFVLGILFSS 35 (39)
T ss_pred HHHHHHHHHHh
Confidence 33334444443
No 156
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=38.81 E-value=18 Score=23.56 Aligned_cols=16 Identities=13% Similarity=0.642 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 027513 193 AAFVGLIGIMVGLILN 208 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~ 208 (222)
+++++++++++|.++|
T Consensus 4 V~lL~~~~l~iGlmIG 19 (47)
T PF11772_consen 4 VLLLAILALAIGLMIG 19 (47)
T ss_pred HHHHHHHHHHHHHHee
Confidence 4444555555555444
No 157
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=38.79 E-value=76 Score=23.03 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~l 176 (222)
.+.+++.|..++.+||.+|+-|...+
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666777777777776665543
No 158
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=38.72 E-value=47 Score=24.74 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=19.0
Q ss_pred CCeeEeEEEEEcCCCCeEEEEeeeC
Q 027513 24 EKQGFCDLKVINNTEHHVAFKVKTT 48 (222)
Q Consensus 24 ~~~~~~~l~L~N~s~~~VaFKVKTT 48 (222)
++..+..|+|+|.+++.+.|++.-.
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~ 31 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHV 31 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE
T ss_pred CCceEEEEEEEECCCCCEEEEEeeE
Confidence 3456889999999999999998766
No 159
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=38.06 E-value=1.2e+02 Score=21.76 Aligned_cols=45 Identities=31% Similarity=0.586 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhccccCC-CCchHHHHHHHHHHHHHHHHHHhhhc
Q 027513 167 QLLQQDLDMLKRRGQRKGV-RGFSLMFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 167 ~~L~~el~~lr~~~~~~~~-~g~sl~~~~lv~ll~~llG~~l~~~~ 211 (222)
++-++|...+|.-.-++.+ ....+...++++++|+++|++++.++
T Consensus 24 ~~~~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~ 69 (121)
T PF02687_consen 24 RERRREIAILRALGASKRQIRKMFLYEALLIALIGILIGILLGILL 69 (121)
T ss_pred HHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566644322111 11224445666666666666655543
No 160
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=38.00 E-value=23 Score=26.65 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 027513 192 FAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~~~ 212 (222)
+.+++.++++++|-++|+.+|
T Consensus 3 ~~~li~~i~fiiGs~~GL~yS 23 (99)
T PF09877_consen 3 FILLIYIILFIIGSFLGLEYS 23 (99)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888766
No 161
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=37.78 E-value=1.3e+02 Score=26.18 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=24.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 027513 186 RGFSLMFAAFVGLIGIMVGLILNLLLSSP 214 (222)
Q Consensus 186 ~g~sl~~~~lv~ll~~llG~~l~~~~~~~ 214 (222)
..|...++.++|=+||++|..++++--.|
T Consensus 75 ~~f~r~~lAlAASVAFv~Gl~~~~~~~~~ 103 (232)
T PF11859_consen 75 PRFARWHLALAASVAFVVGLSFGQLNWGP 103 (232)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45677788889999999999999887666
No 162
>PRK02119 hypothetical protein; Provisional
Probab=37.75 E-value=96 Score=21.84 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+|..|.+.+.+..+++..|+.++..|+.+
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666777778888887776554
No 163
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=37.73 E-value=70 Score=27.82 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQ 170 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~ 170 (222)
++.+|..+|++|+.+|+
T Consensus 73 ~l~~en~~L~~e~~~l~ 89 (276)
T PRK13922 73 DLREENEELKKELLELE 89 (276)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 164
>PRK00736 hypothetical protein; Provisional
Probab=37.72 E-value=99 Score=21.44 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+|..|.+.+.+..+++..|+.++..|+.+
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777788888887777544
No 165
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=37.11 E-value=82 Score=23.18 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~ 175 (222)
.++..+.++|.+||++|+.|...
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~~ 48 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKAV 48 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777766543
No 166
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=37.05 E-value=33 Score=24.98 Aligned_cols=20 Identities=35% Similarity=0.278 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 027513 193 AAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~~~~~ 212 (222)
-+..+.+|+.+|+++|+|++
T Consensus 73 P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 73 PWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 47788888999999999986
No 167
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=37.02 E-value=96 Score=26.91 Aligned_cols=6 Identities=0% Similarity=0.147 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027513 168 LLQQDL 173 (222)
Q Consensus 168 ~L~~el 173 (222)
++++|+
T Consensus 124 k~r~e~ 129 (230)
T PF03904_consen 124 KVREEN 129 (230)
T ss_pred HHHHHH
Confidence 334443
No 168
>PRK04325 hypothetical protein; Provisional
Probab=36.91 E-value=1e+02 Score=21.78 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+|..|.+.+.+..+++.+|+.++..|+.+
T Consensus 23 ~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 23 DLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777778888887766544
No 169
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=36.44 E-value=36 Score=23.89 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027513 191 MFAAFVGLIGIMVGLILNL 209 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~ 209 (222)
..-+++.++|+.+||..+-
T Consensus 34 q~~ll~vllaIalGylvs~ 52 (68)
T TIGR02327 34 QLRVLVVLIAIALGYTVSH 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3446777788888887654
No 170
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.26 E-value=75 Score=23.97 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 027513 194 AFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 194 ~lv~ll~~llG~~l~~~~~ 212 (222)
++-.++|+++|+.|---|.
T Consensus 53 v~pil~G~~lG~WLD~~~~ 71 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYP 71 (100)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 3444445555554444443
No 171
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=36.06 E-value=2.3e+02 Score=22.97 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQD 172 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~e 172 (222)
.+.+.++|..+++++.+.|+++
T Consensus 74 ~i~~Y~~~~~~~~~e~~~l~~~ 95 (157)
T PF14235_consen 74 KIARYKKEKARYKSEAEELEAK 95 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444444443
No 172
>PRK04081 hypothetical protein; Provisional
Probab=35.99 E-value=39 Score=28.68 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHh-hhcc
Q 027513 184 GVRGFSLMFAAFVGLIGIMVGLILN-LLLS 212 (222)
Q Consensus 184 ~~~g~sl~~~~lv~ll~~llG~~l~-~~~~ 212 (222)
+.+|..|.=+||...+|-+||-.++ -||-
T Consensus 117 ss~G~gLg~~lLasaAGaiLGswIGnkLfN 146 (207)
T PRK04081 117 SSGGMGLGGTILASAAGAILGSWIGNKLFN 146 (207)
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhHhhhc
Confidence 4578889999999988888886654 3443
No 173
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=35.97 E-value=43 Score=22.46 Aligned_cols=24 Identities=25% Similarity=0.413 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Q 027513 191 MFAAFVGLIGIMVGLILNLLLSSP 214 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~~~~~~ 214 (222)
..+|++.++|+++|=++-+-.|..
T Consensus 5 ~wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 5 PWLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred hhHHHHHHHHHHHhHHHHHHHhcc
Confidence 467888999999999988877765
No 174
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=35.71 E-value=75 Score=27.78 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+|.+|+.+..+++..|+.|++.||+
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666677777666553
No 175
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.46 E-value=1e+02 Score=19.67 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
..|+...+.|..++..|++|.+.|+...
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888888888888777654
No 176
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=35.32 E-value=38 Score=25.20 Aligned_cols=25 Identities=8% Similarity=0.360 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhh-hccCCC
Q 027513 191 MFAAFVGLIGIMVGLILNL-LLSSPP 215 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~-~~~~~~ 215 (222)
..++++++.+|++|.++-- +...|.
T Consensus 3 kw~l~Lc~~SF~~G~lft~R~W~~pe 28 (95)
T PF13334_consen 3 KWVLLLCIASFCAGMLFTNRMWTVPE 28 (95)
T ss_pred hHHHHHHHHHHHHHHHHhcccccCCc
Confidence 3688999999999988765 555553
No 177
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=35.27 E-value=86 Score=26.46 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
.++..-.|+..|++.|++|+++-..||
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqELR 75 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQELR 75 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667777777888887776666
No 178
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=35.26 E-value=35 Score=25.96 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 146 PDANSALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 146 ~e~~~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+.+..+..+.+++..+..+|..|++++..|+.
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~ 53 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQA 53 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667778888888888888888877765443
No 179
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=35.25 E-value=58 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhccCC
Q 027513 195 FVGLIGIMVGLILNLLLSSP 214 (222)
Q Consensus 195 lv~ll~~llG~~l~~~~~~~ 214 (222)
++.-+|-.|..-|+.+-.||
T Consensus 99 a~s~~g~~i~~Kl~dmrnS~ 118 (162)
T PF04201_consen 99 AFSSVGSAISRKLGDMRNSP 118 (162)
T ss_pred HHHHHHHHHHHHHHHHhcch
Confidence 33444555555555555544
No 180
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=34.99 E-value=47 Score=21.88 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027513 190 LMFAAFVGLIGIMVGLI 206 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~ 206 (222)
.+++++.+.+|..+|+.
T Consensus 32 tl~i~~~~~iG~~iG~~ 48 (51)
T PF10031_consen 32 TLFILLFAAIGYYIGKY 48 (51)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555544
No 181
>PRK00846 hypothetical protein; Provisional
Probab=34.80 E-value=1.2e+02 Score=21.75 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+|..|.+.+.+..+++.+|+.++..|+.+
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777788888887766654
No 182
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=34.51 E-value=1.4e+02 Score=26.02 Aligned_cols=12 Identities=8% Similarity=0.111 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhc
Q 027513 169 LQQDLDMLKRRG 180 (222)
Q Consensus 169 L~~el~~lr~~~ 180 (222)
|..+-.++++-.
T Consensus 199 L~~~Serve~y~ 210 (244)
T KOG2678|consen 199 LMDVSERVEKYD 210 (244)
T ss_pred HHhhhHHHHHHH
Confidence 444434444443
No 183
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=34.43 E-value=60 Score=22.09 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhc
Q 027513 188 FSLMFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l~~~~ 211 (222)
+.+.+.++|.++.+++|..++++.
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~Ftl~I 27 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGASFTLFI 27 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888999999998888753
No 184
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=34.35 E-value=1e+02 Score=21.42 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027513 158 ERDAAVRQTQLLQQDLD 174 (222)
Q Consensus 158 E~~~l~~en~~L~~el~ 174 (222)
-..+++.||..|+++..
T Consensus 15 ~~~~L~~EN~~Lr~q~~ 31 (65)
T TIGR02449 15 YLERLKSENRLLRAQEK 31 (65)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 185
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=34.16 E-value=29 Score=28.12 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~ 175 (222)
.+|+.+.+++.+|.+++++++..
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777777777776554
No 186
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.38 E-value=96 Score=22.03 Aligned_cols=13 Identities=15% Similarity=0.458 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQ 165 (222)
Q Consensus 153 ~~L~eE~~~l~~e 165 (222)
..|+++.+.+.+|
T Consensus 28 eELKEknn~l~~e 40 (79)
T COG3074 28 EELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHhhHhHHH
Confidence 3444444433333
No 187
>PF15058 Speriolin_N: Speriolin N terminus
Probab=33.32 E-value=57 Score=27.60 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQD 172 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~e 172 (222)
+..|.+|..|..+|+++.+-+++.
T Consensus 11 rhqierLv~ENeeLKKlVrLirEN 34 (200)
T PF15058_consen 11 RHQIERLVRENEELKKLVRLIREN 34 (200)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 556666666666666655555544
No 188
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=33.14 E-value=54 Score=26.01 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHHHHHHHHhhhcc
Q 027513 156 KDERDAAVRQTQLLQQDLDMLKRRGQRKGVRGFSLMFAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 156 ~eE~~~l~~en~~L~~el~~lr~~~~~~~~~g~sl~~~~lv~ll~~llG~~l~~~~~ 212 (222)
+|.++.....+++++.|.+.-++.. +-.+-..+++.-.|++|=++++.||+
T Consensus 13 ke~~~~~e~KIrq~~rd~~y~~R~~------~~Y~~LfiVFl~AG~vLw~vM~~iFd 63 (141)
T PRK13743 13 KEKKNDAELKIRQTKRDYDYERRVS------DIYFDLFIVFLTAGIVLWVIMHSIFD 63 (141)
T ss_pred hccCCChhHHHHhhhhhHHHHHHHH------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444456677777776544442 11233334444568899999999986
No 189
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=32.93 E-value=26 Score=25.67 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=16.4
Q ss_pred EEEeeeCCCC--ceEeeCCeeeeC
Q 027513 42 AFKVKTTSPK--KYFVRPNTGVVQ 63 (222)
Q Consensus 42 aFKVKTT~P~--~Y~VrP~~Gii~ 63 (222)
+||+|+.+-+ ||++.|+.|+-+
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~ 25 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEE 25 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHH
Confidence 6999987666 777778877644
No 190
>PRK09039 hypothetical protein; Validated
Probab=32.81 E-value=82 Score=28.75 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 146 PDANSALQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 146 ~e~~~~i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
+++...|..|+.|+..|+.|+..|+.+++..+
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777777777777777665544
No 191
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=32.38 E-value=1.3e+02 Score=20.97 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
+..+..++..+.++++++++|-+.|+...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777554
No 192
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.37 E-value=86 Score=27.27 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Q 027513 149 NSALQRLKDERDAAVRQTQ---LLQQDLDMLKRR 179 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~---~L~~el~~lr~~ 179 (222)
.++..+|++|..+++.++. .|++|.++||+.
T Consensus 75 ~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 75 REENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777776655 556666677754
No 193
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=32.04 E-value=64 Score=22.13 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027513 190 LMFAAFVGLIGIMVGLILNL 209 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~ 209 (222)
+..+++.+++|+++-||.|+
T Consensus 19 ~~~~~~a~~lgl~~ly~vG~ 38 (60)
T TIGR02459 19 LAAALVAALLGLFLVYFVGF 38 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 66778888999999998875
No 194
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=32.04 E-value=1.9e+02 Score=22.41 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=29.7
Q ss_pred CeeEeEEEEEcCCCCeEEEE---------------eeeCCCCceEeeC--CeeeeCCCCeeEecccc
Q 027513 25 KQGFCDLKVINNTEHHVAFK---------------VKTTSPKKYFVRP--NTGVVQPWDSCIIRAQR 74 (222)
Q Consensus 25 ~~~~~~l~L~N~s~~~VaFK---------------VKTT~P~~Y~VrP--~~Gii~P~~s~~I~~~~ 74 (222)
....-..+|.|.++.+++|= =|+-.|..|...+ +..-|.||+++.+.+..
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~ 134 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRL 134 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEe
Confidence 34445556666666554431 1333566666654 34459999999998653
No 195
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=31.86 E-value=36 Score=27.86 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=23.0
Q ss_pred EEeeeCCCCceEeeCCeee--eCCCCeeEec
Q 027513 43 FKVKTTSPKKYFVRPNTGV--VQPWDSCIIR 71 (222)
Q Consensus 43 FKVKTT~P~~Y~VrP~~Gi--i~P~~s~~I~ 71 (222)
|+|.-=+=+.|++.|.-|+ |.||+++.|.
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~ 99 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIP 99 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEE
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEE
Confidence 7888888889999999998 8999999998
No 196
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=31.78 E-value=95 Score=20.28 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHh-hhccCC
Q 027513 192 FAAFVGLIGIMVGLILN-LLLSSP 214 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~-~~~~~~ 214 (222)
..++-.+++++.|++++ .++..-
T Consensus 5 ~y~~~~~~~l~~~~il~~~~~~~~ 28 (54)
T PF07664_consen 5 LYLLGILVALLVGLILKKTILKGE 28 (54)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCC
Confidence 34556677788888888 555443
No 197
>COG5547 Small integral membrane protein [Function unknown]
Probab=31.69 E-value=67 Score=21.92 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027513 190 LMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~ 208 (222)
..++++.+++|+-+|++.+
T Consensus 32 tilviil~~lGv~iGl~~~ 50 (62)
T COG5547 32 TILVIILILLGVYIGLYKK 50 (62)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888764
No 198
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=31.53 E-value=1e+02 Score=23.38 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 148 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 148 ~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
....+.+|..++.++..|+.-|++.....|++
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 45678899999999999999999988776654
No 199
>PF15018 InaF-motif: TRP-interacting helix
Probab=31.52 E-value=93 Score=19.34 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q 027513 190 LMFAAFVGLIGIMVGLILNLLLSSP 214 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~~~~~~ 214 (222)
+.+++.|.+.|++|.-++.+++.+.
T Consensus 11 ~~Yl~~VSl~Ai~LsiYY~f~W~p~ 35 (38)
T PF15018_consen 11 VAYLFSVSLAAIVLSIYYIFFWDPD 35 (38)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCC
Confidence 4567889999999999998888654
No 200
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=31.25 E-value=78 Score=28.43 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
+..|.++...+++||++|++|.+.++.
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~ 60 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQA 60 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555443
No 201
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.18 E-value=1.4e+02 Score=22.76 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+.++..++++.++++++++..+|+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 91 ELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 202
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=30.90 E-value=26 Score=32.63 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=15.6
Q ss_pred CCchHHHHHHHH-HHHHHHHHHH
Q 027513 186 RGFSLMFAAFVG-LIGIMVGLIL 207 (222)
Q Consensus 186 ~g~sl~~~~lv~-ll~~llG~~l 207 (222)
.|.++..|++|+ |+|||.-|||
T Consensus 370 aGIsvavvvvVgglvGfLcWwf~ 392 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCWWFI 392 (397)
T ss_pred eeeeehhHHHHHHHHHHHhhhee
Confidence 466676665554 8888888886
No 203
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=30.86 E-value=73 Score=20.93 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhh
Q 027513 197 GLIGIMVGLILNLL 210 (222)
Q Consensus 197 ~ll~~llG~~l~~~ 210 (222)
.++|+++|.+++++
T Consensus 6 l~~G~~vG~~~~~l 19 (49)
T TIGR03510 6 LGAGLLVGALYSLL 19 (49)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444445444443
No 204
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=30.57 E-value=1.1e+02 Score=26.55 Aligned_cols=43 Identities=7% Similarity=0.150 Sum_probs=29.9
Q ss_pred EEEEEcCCCCeEEEE-eeeCCCCceEeeCCeeeeCCCCeeEeccc
Q 027513 30 DLKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRAQ 73 (222)
Q Consensus 30 ~l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~Gii~P~~s~~I~~~ 73 (222)
.|+++|+|..++.|. ++....++ .+....|+|.|+++..+.+.
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~~-~~~~~~~mv~P~s~~~~~l~ 220 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNGA-SYNLDADMIAPFSSQTWWLP 220 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCCe-ecCCCCceECCCCccEEEcc
Confidence 599999999999886 43222221 23234589999999998753
No 205
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=30.56 E-value=1.2e+02 Score=22.43 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el 173 (222)
.+.+-.|-+++..+++|++.|++.+
T Consensus 70 ialvl~LLd~i~~Lr~el~~L~~~l 94 (101)
T PRK10265 70 IAVALTLLDEIAHLKQENRLLRQRL 94 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777754
No 206
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=30.47 E-value=2e+02 Score=24.79 Aligned_cols=19 Identities=5% Similarity=0.270 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027513 189 SLMFAAFVGLIGIMVGLIL 207 (222)
Q Consensus 189 sl~~~~lv~ll~~llG~~l 207 (222)
.+++.++++..|++|||+.
T Consensus 199 qw~~g~v~~~~Al~La~~r 217 (220)
T KOG3156|consen 199 QWLIGVVTGTSALVLAYLR 217 (220)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4777788899999999874
No 207
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=30.28 E-value=10 Score=28.13 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 027513 189 SLMFAAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 189 sl~~~~lv~ll~~llG~~l~~~ 210 (222)
|++|++=.+|=|.+|||+++..
T Consensus 68 SlLFaLQAaiGagiIgY~~G~~ 89 (91)
T TIGR01165 68 SLLFALQAALGALVIGYVIGYY 89 (91)
T ss_pred HHHHHHHHHhhheeeeEEEEEe
Confidence 7899999999999999998753
No 208
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=30.27 E-value=64 Score=27.26 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
.|+-.......++++|+.|++++..|-...
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~A 70 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENA 70 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677788888999998887766543
No 209
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.22 E-value=1.4e+02 Score=25.67 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 027513 154 RLKDERDA 161 (222)
Q Consensus 154 ~L~eE~~~ 161 (222)
.|..++..
T Consensus 157 dL~~QRe~ 164 (220)
T KOG1666|consen 157 DLHGQREQ 164 (220)
T ss_pred HHHHHHHH
Confidence 33333333
No 210
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=30.09 E-value=92 Score=25.26 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=29.1
Q ss_pred eEEeccc-CCeeEeEEEEEc---CCCCeEEEEeee------CCCCceEeeCCe
Q 027513 17 LKFIFEL-EKQGFCDLKVIN---NTEHHVAFKVKT------TSPKKYFVRPNT 59 (222)
Q Consensus 17 L~F~~~~-~~~~~~~l~L~N---~s~~~VaFKVKT------T~P~~Y~VrP~~ 59 (222)
|.|.... .+-..|.++|.- .....|+|++|= ..|.-+|++||.
T Consensus 102 Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 102 LRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred EEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 5555422 356678888876 234559999983 356788999984
No 211
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=29.90 E-value=1.6e+02 Score=20.77 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
+.++.|+.|=+.+.-|+=.|+++++..|+..
T Consensus 8 ~lL~~lQnEWDa~mLE~f~LRk~l~~~rqEL 38 (70)
T PF08606_consen 8 SLLSTLQNEWDALMLENFTLRKQLDQTRQEL 38 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999888888888888888887764
No 212
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=29.84 E-value=72 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCC
Q 027513 192 FAAFVGLIGIMVGLILNLLLSSPPP 216 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~~~~~~~ 216 (222)
++++.+-+++.++|.++.|+.+|.-
T Consensus 10 ~~~vg~a~~~a~~~~~r~l~~~PdV 34 (73)
T PF06522_consen 10 FVIVGVAVGGATFYLYRLLLTNPDV 34 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 3444445567778889999888854
No 213
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=29.72 E-value=1.3e+02 Score=20.58 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
+...-.|++.|+.+.--|++||.-+|....
T Consensus 5 Lr~VL~ERNeLK~~v~~leEEL~~yk~~~~ 34 (60)
T PF11461_consen 5 LREVLQERNELKARVFLLEEELAYYKSELL 34 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 455667899999999999999999887654
No 214
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.67 E-value=49 Score=31.87 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027513 158 ERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 158 E~~~l~~en~~L~~el~~lr~ 178 (222)
++++|++|.++|++|++.+.+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 667777777777776655444
No 215
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.48 E-value=1.4e+02 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcc
Q 027513 186 RGFSLMFAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 186 ~g~sl~~~~lv~ll~~llG~~l~~~~~ 212 (222)
-|..-.-|+.=.++|++++|++...|.
T Consensus 126 lGH~p~eV~~G~~lGI~i~~i~~~~~~ 152 (153)
T COG1963 126 LGHTPLEVFAGLLLGILIAWIFYAFFM 152 (153)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788899999999999999988764
No 216
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=29.41 E-value=91 Score=20.87 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=13.1
Q ss_pred eEeEEEEEcCCCCeEEEEe
Q 027513 27 GFCDLKVINNTEHHVAFKV 45 (222)
Q Consensus 27 ~~~~l~L~N~s~~~VaFKV 45 (222)
+...-++...+.+.||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 4444555566679999996
No 217
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.29 E-value=1.3e+02 Score=23.39 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el 173 (222)
+.|.++..|+..+++++.+|..+-
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444433
No 218
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=29.16 E-value=73 Score=21.95 Aligned_cols=20 Identities=20% Similarity=0.266 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027513 190 LMFAAFVGLIGIMVGLILNL 209 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~ 209 (222)
+..+++-|||.|-+||++.-
T Consensus 7 lQli~lcALIf~pLgyl~~r 26 (62)
T TIGR03493 7 LQLVLLCALIFFPLGYLARR 26 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHh
Confidence 34567788999999998653
No 219
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=29.07 E-value=11 Score=28.05 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 027513 189 SLMFAAFVGLIGIMVGLILNL 209 (222)
Q Consensus 189 sl~~~~lv~ll~~llG~~l~~ 209 (222)
|++|.+=.+|=+.+|||+++.
T Consensus 66 SLLFslQaaiGa~IIgY~lGy 86 (97)
T COG1930 66 SLLFSLQAAIGAGIIGYFLGY 86 (97)
T ss_pred HHHHHHHHHhcceeeeeeeee
Confidence 688888888888999998874
No 220
>PHA03029 hypothetical protein; Provisional
Probab=28.96 E-value=77 Score=22.80 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 027513 193 AAFVGLIGIMVGLILN 208 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~ 208 (222)
+++.+++|++-||++.
T Consensus 18 ilila~igiiwg~lls 33 (92)
T PHA03029 18 ILILAIIGIIWGFLLS 33 (92)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666676654
No 221
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=28.85 E-value=1.9e+02 Score=20.79 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
..+..|+.++.++.+-|.+|+++...++.
T Consensus 26 ~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 26 ILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777777777888888888776665
No 222
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=28.77 E-value=90 Score=20.27 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 027513 193 AAFVGLIGIMVGLILNLLLSSP 214 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~~~~~~~ 214 (222)
+++..++++.+||++-..|.+.
T Consensus 10 ~~~~i~~g~~~G~~lD~~~~t~ 31 (55)
T PF09527_consen 10 MAAPILVGFFLGYWLDKWFGTS 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 4455567778888887777663
No 223
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=28.74 E-value=4e+02 Score=23.36 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=52.4
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCC-eEEEEeeeCCC------CceEeeCCeeeeCCCCeeEeccc-c----CCC
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTSP------KKYFVRPNTGVVQPWDSCIIRAQ-R----ESP 77 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~P------~~Y~VrP~~Gii~P~~s~~I~~~-~----~~~ 77 (222)
|.++-..+.|+. +....+++|.|.++. ++.-..+...- .-|-|-|+.--|+||+...|.+. . ..|
T Consensus 28 i~l~~TRvIy~e---~~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP 104 (257)
T PRK15274 28 IVPDRTRVIFNG---NENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLP 104 (257)
T ss_pred EEeCceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCC
Confidence 344444677875 455789999999865 55544432211 13999999999999999998832 1 234
Q ss_pred CCCCCCCeEEEEEEecCC
Q 027513 78 PDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 78 ~~~~~~dKFlVqs~~~~~ 95 (222)
.| -.--|-+....+|+
T Consensus 105 ~D--RESlFwlNv~eIPp 120 (257)
T PRK15274 105 QD--RESLFYFNVREIPP 120 (257)
T ss_pred Cc--eeEEEEEEEEEcCC
Confidence 33 12346666666776
No 224
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.74 E-value=1.1e+02 Score=26.65 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~l 176 (222)
...|..|+.|+++|+-+++.++-+++.+
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455677777777776666555555443
No 225
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=28.71 E-value=59 Score=23.47 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=8.6
Q ss_pred CchHHHHHHHHHHHHH
Q 027513 187 GFSLMFAAFVGLIGIM 202 (222)
Q Consensus 187 g~sl~~~~lv~ll~~l 202 (222)
|++...++++++|+++
T Consensus 3 g~g~~ellIIlvIvll 18 (78)
T PRK00720 3 SFSIWHWLIVLAVVLL 18 (78)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 5655555555555444
No 226
>PTZ00478 Sec superfamily; Provisional
Probab=28.56 E-value=1.9e+02 Score=21.08 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=8.9
Q ss_pred HHHHHHHhhhc
Q 027513 201 IMVGLILNLLL 211 (222)
Q Consensus 201 ~llG~~l~~~~ 211 (222)
-+|||++++++
T Consensus 60 G~IGy~IKLIh 70 (81)
T PTZ00478 60 GFIGYSIKLVF 70 (81)
T ss_pred HHHHHhhheeE
Confidence 35799999886
No 227
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.21 E-value=23 Score=29.21 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
..|.++.++|+.|.+-|++|+ .+|
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl-~V~ 50 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL-IVQ 50 (166)
T ss_dssp HHHHHCH------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 478889999999999999998 443
No 228
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=27.82 E-value=51 Score=29.16 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcc
Q 027513 188 FSLMFAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l~~~~~ 212 (222)
.++++=++.++||++.||..+++|.
T Consensus 235 ~~~lYGl~av~lAi~aGw~As~iFr 259 (261)
T TIGR02186 235 NPLIYGLLAVALAVVTGWGASILFR 259 (261)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhc
Confidence 4588889999999999999999985
No 229
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=27.78 E-value=1.3e+02 Score=23.06 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
..+.+|+.+..+|.+||.-|+-+++.|.
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777778888877766665544
No 230
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=27.69 E-value=63 Score=21.71 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 027513 193 AAFVGLIGIMVGLILNLLLSSP 214 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~~~~~~~ 214 (222)
.+-.++++.++||+.+.|-++|
T Consensus 7 ~fWs~il~~vvgyI~ssL~~~~ 28 (57)
T PF11151_consen 7 FFWSFILGEVVGYIGSSLTGVT 28 (57)
T ss_pred hHHHHHHHHHHHHHHHHHhCCC
Confidence 4556778888888888888774
No 231
>smart00605 CW CW domain.
Probab=27.62 E-value=75 Score=22.92 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=14.6
Q ss_pred EEEEEcC-CCCeEEEEeeeCCCC
Q 027513 30 DLKVINN-TEHHVAFKVKTTSPK 51 (222)
Q Consensus 30 ~l~L~N~-s~~~VaFKVKTT~P~ 51 (222)
.++-.+. +...||||+.++.+.
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCCC
Confidence 3444443 568899999877554
No 232
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=27.39 E-value=70 Score=21.66 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 027513 192 FAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~~~ 212 (222)
.+++++|+++-+|+-+++.-.
T Consensus 4 ~lLf~aiLalsla~s~gavCe 24 (59)
T PF03823_consen 4 TLLFAAILALSLARSFGAVCE 24 (59)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 457889999999999998754
No 233
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.29 E-value=1.2e+02 Score=26.14 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCeEEEE--eeeCCCCceEeeCCeeeeCCCCeeEecccc
Q 027513 29 CDLKVINNTEHHVAFK--VKTTSPKKYFVRPNTGVVQPWDSCIIRAQR 74 (222)
Q Consensus 29 ~~l~L~N~s~~~VaFK--VKTT~P~~Y~VrP~~Gii~P~~s~~I~~~~ 74 (222)
..|+++|+|..+|.|- .-+. .++-.. -+.+.|.|+++..+.+..
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~~ 210 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLPS 210 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecCC
Confidence 6899999999999998 4444 444333 789999999999877543
No 234
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=27.09 E-value=85 Score=16.68 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=10.1
Q ss_pred CCchHHHH-HHHHHHHHH
Q 027513 186 RGFSLMFA-AFVGLIGIM 202 (222)
Q Consensus 186 ~g~sl~~~-~lv~ll~~l 202 (222)
.||++.=+ +.++++|++
T Consensus 1 ~GFTLiE~~v~l~i~~i~ 18 (20)
T PF07963_consen 1 KGFTLIELLVALAIIAIL 18 (20)
T ss_pred CceeHHHHHHHHHHHHHH
Confidence 37887643 555566654
No 235
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=26.86 E-value=96 Score=18.96 Aligned_cols=20 Identities=0% Similarity=0.110 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 027513 191 MFAAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~~ 210 (222)
..+++++|=-++.||++++|
T Consensus 18 Wa~llLaINflVAayYFhii 37 (37)
T PF08078_consen 18 WALLLLAINFLVAAYYFHII 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHHHheeC
Confidence 34567777777888988765
No 236
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.80 E-value=2.5e+02 Score=24.37 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027513 155 LKDERDAAVRQTQLLQQD 172 (222)
Q Consensus 155 L~eE~~~l~~en~~L~~e 172 (222)
++.|+..++++|++.-+|
T Consensus 118 ~~~ei~k~r~e~~~ml~e 135 (230)
T PF03904_consen 118 AQNEIKKVREENKSMLQE 135 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555554444
No 237
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=26.69 E-value=79 Score=22.98 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q 027513 194 AFVGLIGIMVGLILN 208 (222)
Q Consensus 194 ~lv~ll~~llG~~l~ 208 (222)
++++++++++|++++
T Consensus 13 ~~~~l~~~lvG~~~g 27 (90)
T PF11808_consen 13 LLLLLAAALVGWLFG 27 (90)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444443
No 238
>PRK14139 heat shock protein GrpE; Provisional
Probab=26.42 E-value=2e+02 Score=24.02 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
..+..|.+++..++....+++.|.+-+|++..
T Consensus 39 ~~l~~le~e~~elkd~~lR~~AefeN~rKR~~ 70 (185)
T PRK14139 39 AELAEAEAKAAELQDSFLRAKAETENVRRRAQ 70 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666544
No 239
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=26.42 E-value=70 Score=22.93 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=9.3
Q ss_pred CCchHHHHHHHHHHHHH
Q 027513 186 RGFSLMFAAFVGLIGIM 202 (222)
Q Consensus 186 ~g~sl~~~~lv~ll~~l 202 (222)
+|++....++++++.++
T Consensus 2 gg~s~~ellIIlvIvlL 18 (75)
T PRK04561 2 GSFSIWHWLVVLVIVLL 18 (75)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 35666665555555444
No 240
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=26.09 E-value=42 Score=31.29 Aligned_cols=12 Identities=8% Similarity=0.553 Sum_probs=5.9
Q ss_pred HHHHHHHHhhhc
Q 027513 200 GIMVGLILNLLL 211 (222)
Q Consensus 200 ~~llG~~l~~~~ 211 (222)
-+++|+++++||
T Consensus 313 lL~ig~~~gFv~ 324 (387)
T PF12751_consen 313 LLVIGFAIGFVF 324 (387)
T ss_pred HHHHHHHHHhhh
Confidence 344555555554
No 241
>CHL00031 psbT photosystem II protein T
Probab=25.85 E-value=1.6e+02 Score=17.73 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCC
Q 027513 195 FVGLIGIMVGLILNLLLSSPPPTVPQ 220 (222)
Q Consensus 195 lv~ll~~llG~~l~~~~~~~~~~~~~ 220 (222)
.+.|+...||-++-++|---||.++.
T Consensus 6 Ytfll~~tlgilFFAI~FRePPri~k 31 (33)
T CHL00031 6 YTFLLVSTLGIIFFAIFFREPPKVPT 31 (33)
T ss_pred HHHHHHHHHHHHHHhheecCCCCCCC
Confidence 44555566666666666555555543
No 242
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=25.70 E-value=67 Score=27.00 Aligned_cols=24 Identities=50% Similarity=0.526 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Q 027513 190 LMFAAFVGLIGIMVGLILNLLLSS 213 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~~~~~ 213 (222)
+.=+++.++.++++|+++|.++.+
T Consensus 139 ~~rA~~~~~~~L~~G~~lGs~l~~ 162 (194)
T PF11833_consen 139 LGRAFLWTLGGLVVGLILGSLLAS 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666777777777777776653
No 243
>PRK14147 heat shock protein GrpE; Provisional
Probab=25.61 E-value=1.8e+02 Score=23.88 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 148 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 148 ~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
....+..|++|+..++....+++.+.+-+|++..
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~ 56 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIA 56 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777776666544
No 244
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=25.48 E-value=1.1e+02 Score=25.95 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027513 158 ERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 158 E~~~l~~en~~L~~el~~lr 177 (222)
|...++.|..++++|+..||
T Consensus 45 Ekeelr~EL~kvEeEI~TLr 64 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLR 64 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 245
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=25.43 E-value=1.5e+02 Score=20.34 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=8.7
Q ss_pred HHHHHHHhhhcc
Q 027513 201 IMVGLILNLLLS 212 (222)
Q Consensus 201 ~llG~~l~~~~~ 212 (222)
-+|||++++++.
T Consensus 43 G~IGf~Ikli~~ 54 (61)
T TIGR00327 43 GIIGYIIKIIAI 54 (61)
T ss_pred HHHHHHHHHHHH
Confidence 357888888763
No 246
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=25.34 E-value=2e+02 Score=18.67 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.|+.....|..|.+.||..+...++
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666555444
No 247
>PRK10722 hypothetical protein; Provisional
Probab=25.31 E-value=1.7e+02 Score=25.75 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 156 KDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 156 ~eE~~~l~~en~~L~~el~~lr 177 (222)
.++++++++|+.+|+.+++...
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~ 196 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTT 196 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888776544
No 248
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=25.26 E-value=83 Score=24.11 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el 173 (222)
+..|++++..|.+|.++|+.++
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 85 MDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777664
No 249
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=25.14 E-value=3.9e+02 Score=25.46 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHH
Q 027513 150 SALQRLKDERDAAVRQTQ--LLQQ 171 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~--~L~~ 171 (222)
.-|++-+||+.+.-+|.. +|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (434)
T PRK15178 5 ERIKKWKEERAKVAQESRASRLQQ 28 (434)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhh
Confidence 357788888888877753 4554
No 250
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=25.06 E-value=1.6e+02 Score=17.47 Aligned_cols=24 Identities=8% Similarity=0.340 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCC
Q 027513 195 FVGLIGIMVGLILNLLLSSPPPTV 218 (222)
Q Consensus 195 lv~ll~~llG~~l~~~~~~~~~~~ 218 (222)
.+.|+...||-++-++|---||.+
T Consensus 6 Ytfll~~tlgiiFFAIfFRepPri 29 (31)
T PRK11875 6 YILILTLALVTLFFAIAFRDPPKI 29 (31)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCC
Confidence 344555566666666655444443
No 251
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.01 E-value=89 Score=23.60 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred eEeEEEEEcCCCCeEEEEeeeCCCC
Q 027513 27 GFCDLKVINNTEHHVAFKVKTTSPK 51 (222)
Q Consensus 27 ~~~~l~L~N~s~~~VaFKVKTT~P~ 51 (222)
..-.|++.+-.+.-+-||||.++|=
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~L 43 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPL 43 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChH
Confidence 3567788886668889999999985
No 252
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=24.97 E-value=77 Score=29.15 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el 173 (222)
.+|+.|.+.|+.+..+|+.|.
T Consensus 42 ~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 42 HSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 466666666666666665554
No 253
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.96 E-value=1.3e+02 Score=23.24 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhhccC
Q 027513 197 GLIGIMVGLILNLLLSS 213 (222)
Q Consensus 197 ~ll~~llG~~l~~~~~~ 213 (222)
.++|.+||||+--.+-+
T Consensus 56 ilVGa~iG~llD~~agT 72 (116)
T COG5336 56 ILVGAGIGWLLDKFAGT 72 (116)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 34456666666554433
No 254
>PRK01203 prefoldin subunit alpha; Provisional
Probab=24.90 E-value=1.3e+02 Score=23.70 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+.+|++.+.+|.+.|++++..||.
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~ 28 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNK 28 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666665555543
No 255
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.82 E-value=1.9e+02 Score=20.88 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 027513 165 QTQLLQQDL 173 (222)
Q Consensus 165 en~~L~~el 173 (222)
+|.+|++|.
T Consensus 54 en~qLk~E~ 62 (79)
T PRK15422 54 ENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHH
Confidence 444444443
No 256
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=24.78 E-value=99 Score=20.89 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 027513 192 FAAFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~~~ 212 (222)
++++++|.-++-||++.+--|
T Consensus 5 f~~ti~lvv~LYgY~yhLYrs 25 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYHLYRS 25 (56)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 455666667788999887543
No 257
>PHA02911 C-type lectin-like protein; Provisional
Probab=24.69 E-value=1.4e+02 Score=25.55 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhc
Q 027513 188 FSLMFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 188 ~sl~~~~lv~ll~~llG~~l~~~~ 211 (222)
+-+..++|-.++-+++--++.+||
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~ 52 (213)
T PHA02911 29 LALIIACLCLILTIIIICLFAALF 52 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555
No 258
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=24.58 E-value=1.6e+02 Score=20.27 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLD 174 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~ 174 (222)
+.+|.+-+.-|+.|+++|+.|+.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777778888888887753
No 259
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=24.37 E-value=75 Score=23.67 Aligned_cols=17 Identities=6% Similarity=0.036 Sum_probs=9.1
Q ss_pred CCchHHHHHHHHHHHHH
Q 027513 186 RGFSLMFAAFVGLIGIM 202 (222)
Q Consensus 186 ~g~sl~~~~lv~ll~~l 202 (222)
+++++..++++++|+++
T Consensus 2 g~~g~~elliIlvIvll 18 (92)
T PRK00442 2 GIFDWKHWIVILVVVVL 18 (92)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 35666555555555444
No 260
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.35 E-value=1.3e+02 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.414 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
.++.+|+.++++|.++.+.|.+.|+++.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666553
No 261
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=24.17 E-value=77 Score=29.63 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCC
Q 027513 191 MFAAFVGLIGIMVGLILNLLLSSPPP 216 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~~~~~~~~ 216 (222)
..+.+..++|.+|||++--|+.-||.
T Consensus 80 Vnv~Lt~~ig~liG~lv~~I~rppp~ 105 (408)
T KOG2722|consen 80 VNVGLTFIIGSLIGWLVVKILRPPPQ 105 (408)
T ss_pred HHHHHHHHHHHHHHHHHhheecCChh
Confidence 35688899999999999999987764
No 262
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.13 E-value=1.2e+02 Score=27.29 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
--+.+|.+|+..|..|+++|+.+|+..+..
T Consensus 219 vRLkKl~~eke~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 219 VRLKKLADEKEELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999876544
No 263
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=24.13 E-value=72 Score=21.86 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el 173 (222)
++..|.+|+.+|+++|..|+=++
T Consensus 22 tL~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 22 TLKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHhccccceee
Confidence 45566666666666666665554
No 264
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.92 E-value=2.4e+02 Score=19.23 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 027513 165 QTQLLQQDLDMLK 177 (222)
Q Consensus 165 en~~L~~el~~lr 177 (222)
.|..|.+++..|+
T Consensus 40 rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 40 RNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 265
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.91 E-value=4.6e+02 Score=22.43 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=7.2
Q ss_pred CceEeeCCeee
Q 027513 51 KKYFVRPNTGV 61 (222)
Q Consensus 51 ~~Y~VrP~~Gi 61 (222)
+.|.--|+.|+
T Consensus 57 ~~y~~~p~~gm 67 (215)
T KOG1690|consen 57 KGYGSYPNIGM 67 (215)
T ss_pred cccccCCCceE
Confidence 35666677775
No 266
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.83 E-value=1.7e+02 Score=19.90 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
+..|.+-+..|+.|+.+++.++..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777776544
No 267
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=23.77 E-value=1.9e+02 Score=17.78 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 027513 192 FAAFVGLIGIMVGLILNLLLSSPPPTVP 219 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~~~~~~~~~~ 219 (222)
.++..+++.++-=+++|.| |+-|+.-|
T Consensus 6 ~~Vy~vV~ffv~LFifGfl-snDp~RnP 32 (36)
T PF02532_consen 6 IFVYTVVIFFVSLFIFGFL-SNDPGRNP 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCTTSSS
T ss_pred EeehhhHHHHHHHHhcccc-CCCCCCCC
Confidence 3344444444444455555 54444444
No 268
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.52 E-value=1.1e+02 Score=23.04 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=14.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHh
Q 027513 187 GFSLMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 187 g~sl~~~~lv~ll~~llG~~l~ 208 (222)
.++-+.+.+.+|+|++.||+-.
T Consensus 26 r~~q~ilti~aiVg~i~Gf~~Q 47 (101)
T KOG4112|consen 26 RFQQLILTIGAIVGFIYGFAQQ 47 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677788888887644
No 269
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=23.45 E-value=1.4e+02 Score=24.49 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhh---ccCCCCCCC
Q 027513 193 AAFVGLIGIMVGLILNLL---LSSPPPTVP 219 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~~~---~~~~~~~~~ 219 (222)
++-|++--+=+||..-.. -|+|.+-+|
T Consensus 103 vlSv~f~vl~~~~~~~~~~K~ss~pv~~~P 132 (175)
T KOG4253|consen 103 VLSVAFYVLKIMYGKTPVYKLSSSPVTLFP 132 (175)
T ss_pred HHHHHHHHHHHHHhhceeeeecCCceeeec
Confidence 444444444445544443 466665555
No 270
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=23.37 E-value=1.1e+02 Score=19.92 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.2
Q ss_pred HHHHHh
Q 027513 203 VGLILN 208 (222)
Q Consensus 203 lG~~l~ 208 (222)
++++++
T Consensus 49 ~~~~~~ 54 (57)
T PF00584_consen 49 FSWLLN 54 (57)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 271
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.33 E-value=2.1e+02 Score=19.84 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+|.+|...|+++...++.|-..|+.+
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777766666666555544
No 272
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.23 E-value=1.3e+02 Score=28.94 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 146 PDANSALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 146 ~e~~~~i~~L~eE~~~l~~en~~L~~el 173 (222)
.+.++.+..|..+...+++||++|++..
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556667777777777777777776633
No 273
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=23.14 E-value=2.5e+02 Score=20.34 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=32.0
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCC--CeEEEEeeeCCCCceEeeC----CeeeeCCCCeeEecc
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTE--HHVAFKVKTTSPKKYFVRP----NTGVVQPWDSCIIRA 72 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~--~~VaFKVKTT~P~~Y~VrP----~~Gii~P~~s~~I~~ 72 (222)
-+..+|.+|++.. ++ .++++|... +.+.|.=....-..-...+ +.+.+.||++.++..
T Consensus 11 ~~~F~P~~i~v~~--G~----~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF 74 (99)
T TIGR02656 11 ALVFEPAKISIAA--GD----TVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTF 74 (99)
T ss_pred ceeEeCCEEEECC--CC----EEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEe
Confidence 3688999888875 22 367788643 5555532111111000111 335678999988863
No 274
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.06 E-value=2.1e+02 Score=22.89 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
+.+..|.+++..+..+.+.|..++..+|.
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555555555555555543
No 275
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=23.01 E-value=1.1e+02 Score=21.79 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQ 170 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~ 170 (222)
.+-.|-+++..+++|++.|+
T Consensus 64 lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 64 LILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44455555555544444443
No 276
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.93 E-value=1.1e+02 Score=26.37 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 155 LKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 155 L~eE~~~l~~en~~L~~el~~l 176 (222)
++++...++.|.+.+++|.++|
T Consensus 177 ~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 177 AQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHHHHHHHHcccHHHHH
Confidence 3333344444444444444443
No 277
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=22.90 E-value=88 Score=22.27 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=8.5
Q ss_pred CchHHHHHHHHHHHHH
Q 027513 187 GFSLMFAAFVGLIGIM 202 (222)
Q Consensus 187 g~sl~~~~lv~ll~~l 202 (222)
|++...++++++++++
T Consensus 3 ~~g~~elliIl~Ivll 18 (73)
T PRK02958 3 SFSIWHWLIVLVIVVL 18 (73)
T ss_pred CccHHHHHHHHHHHHH
Confidence 4555555555555444
No 278
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.88 E-value=5e+02 Score=24.38 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 027513 191 MFAAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~~ 210 (222)
.++++.+++|+++|..+-++
T Consensus 415 ~~l~~g~~~Gl~lg~~~~~l 434 (498)
T TIGR03007 415 LLMLAGLLGGLGAGIGLAFL 434 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666555444
No 279
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.86 E-value=1.7e+02 Score=24.02 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
..++.+|++|+.+...+.+.|+++.+.+.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666655543
No 280
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=22.77 E-value=56 Score=22.38 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027513 158 ERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 158 E~~~l~~en~~L~~el~~ 175 (222)
++.++++|+..|++|+.+
T Consensus 3 ~~~~l~~ei~~L~~el~~ 20 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELER 20 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 456677778888887765
No 281
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.75 E-value=2.7e+02 Score=19.38 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 027513 164 RQTQLLQQDLDMLKRR 179 (222)
Q Consensus 164 ~en~~L~~el~~lr~~ 179 (222)
.++.+|++|++.|++.
T Consensus 47 ~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 47 EENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666654
No 282
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.71 E-value=4.6e+02 Score=23.36 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=9.9
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 027513 187 GFSLMFAAFVGLIGIMVGLI 206 (222)
Q Consensus 187 g~sl~~~~lv~ll~~llG~~ 206 (222)
||++..++++++.+++.-||
T Consensus 297 Gy~~~l~~m~~~~~~~~~~f 316 (322)
T COG0598 297 GYPIALILMLLLALLLYLYF 316 (322)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444444444
No 283
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=22.66 E-value=1.6e+02 Score=19.91 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCC
Q 027513 191 MFAAFVGLIGIMVGLILNLLLSSPP 215 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~~~~~~~ 215 (222)
+.+.+|+--|| +-|++.+++ -||
T Consensus 32 L~v~~Vg~YGF-~VWm~Q~~~-GpP 54 (56)
T PF06796_consen 32 LAVAFVGGYGF-IVWMYQIFF-GPP 54 (56)
T ss_pred HHHHHHHHHHH-HHHHHHHHc-CCC
Confidence 33333444443 346777644 444
No 284
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=22.66 E-value=1.2e+02 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=12.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 027513 186 RGFSLMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 186 ~g~sl~~~~lv~ll~~llG~~l~ 208 (222)
+|.+.+++.++.++..++-|+++
T Consensus 51 ~~~~~~~~~~~w~~~A~~ly~~R 73 (103)
T PF11027_consen 51 GGNSMFMMMMLWMVLAMALYLLR 73 (103)
T ss_pred CCccHHHHHHHHHHHHHHHHHcC
Confidence 44556665555555555556654
No 285
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=22.49 E-value=1.5e+02 Score=22.75 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
+.+..+..+.+|...|+-||.+|++.|..
T Consensus 26 ~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 26 GLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45667889999999999999999998755
No 286
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.43 E-value=3.4e+02 Score=23.22 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 027513 185 VRGFSLMFAAFVGLIGIMVGLILNLLLSSP 214 (222)
Q Consensus 185 ~~g~sl~~~~lv~ll~~llG~~l~~~~~~~ 214 (222)
-..+|+.-+++++.||+.=.++++.+|..-
T Consensus 175 v~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~ 204 (209)
T KOG1693|consen 175 VTWWSLLEIIAVVVISIAQVFILKFFFTDR 204 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345788888999999999999999999754
No 287
>PF11175 DUF2961: Protein of unknown function (DUF2961); InterPro: IPR021345 This family of proteins has no known function.
Probab=22.33 E-value=2e+02 Score=25.06 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=28.8
Q ss_pred CccEEEecC---eeEEecccCCeeEeEEEEEcCCCCeE-EE--Eeee
Q 027513 7 NQLISVHPE---ELKFIFELEKQGFCDLKVINNTEHHV-AF--KVKT 47 (222)
Q Consensus 7 ~~lL~i~P~---eL~F~~~~~~~~~~~l~L~N~s~~~V-aF--KVKT 47 (222)
+-.+.+.|. ...|+-|+.+ +|.|+|.|.++..+ .+ .|..
T Consensus 39 Sl~~~~~~~~~~n~y~pMPF~k--~arItl~N~~~~~~~~~~~~i~y 83 (237)
T PF11175_consen 39 SLPFGVNPDGGFNCYFPMPFRK--SARITLENESDEPVSAFYYQIDY 83 (237)
T ss_pred ceeEEECCCCcEEEEEecccCC--CeEEEEEeCCCCceeEEEEEEEe
Confidence 345677786 4688888866 78999999999887 44 4544
No 288
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.31 E-value=1.5e+02 Score=28.99 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..+..+.+|+..++.||.+|..++..+|+.
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455788888889999999999888888764
No 289
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=22.31 E-value=1.3e+02 Score=27.71 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..++++.+|++|+++||.|+..|.+.
T Consensus 39 ~~~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 39 NDQQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666667777777777666654
No 290
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=22.20 E-value=2.5e+02 Score=22.31 Aligned_cols=21 Identities=14% Similarity=0.100 Sum_probs=11.1
Q ss_pred CceEeeCCeeeeCCCCeeEec
Q 027513 51 KKYFVRPNTGVVQPWDSCIIR 71 (222)
Q Consensus 51 ~~Y~VrP~~Gii~P~~s~~I~ 71 (222)
..|.+.|..=.|..|..+++.
T Consensus 54 ~n~~~~P~~I~VkaGD~Vtl~ 74 (135)
T TIGR03096 54 FNVLNEPEALVVKKGTPVKVT 74 (135)
T ss_pred eeeEEcCCEEEECCCCEEEEE
Confidence 345555555555555555554
No 291
>PF15294 Leu_zip: Leucine zipper
Probab=22.18 E-value=1.3e+02 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 027513 165 QTQLLQQDLDMLKR 178 (222)
Q Consensus 165 en~~L~~el~~lr~ 178 (222)
|..+|+.++..+|.
T Consensus 161 Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 161 EKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 292
>PRK14141 heat shock protein GrpE; Provisional
Probab=22.15 E-value=1.9e+02 Score=24.66 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
...|..|++|+..++....+++.|.+-+|++..
T Consensus 37 ~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~ 69 (209)
T PRK14141 37 PDPLEALKAENAELKDRMLRLAAEMENLRKRTQ 69 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888777777777777777776644
No 293
>PF14645 Chibby: Chibby family
Probab=22.03 E-value=1.8e+02 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLD 174 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~ 174 (222)
.+++++..+|.+||.-|+=+.+
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665554443
No 294
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=21.93 E-value=66 Score=25.66 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 027513 191 MFAAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~~ 210 (222)
.-..--.|+|+++|+|++++
T Consensus 86 ~~~~~dlL~G~liGff~g~~ 105 (140)
T PF13373_consen 86 SGHNDDLLWGLLIGFFFGLF 105 (140)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 44566677777778777754
No 295
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.89 E-value=4.7e+02 Score=22.29 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQ-----TQLLQQDL 173 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~e-----n~~L~~el 173 (222)
.+.++++++|..+++++ .++||++-
T Consensus 78 qk~m~efq~e~~eA~~~~d~~~lkkLq~~q 107 (201)
T COG1422 78 QKMMKEFQKEFREAQESGDMKKLKKLQEKQ 107 (201)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556666666666654 34555543
No 296
>PF13974 YebO: YebO-like protein
Probab=21.87 E-value=67 Score=23.30 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027513 192 FAAFVGLIGIMVGLILN 208 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~ 208 (222)
+.++++|+|+++-||+.
T Consensus 3 ~~~~~~lv~livWFFVn 19 (80)
T PF13974_consen 3 VSVLVLLVGLIVWFFVN 19 (80)
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 45677777777766653
No 297
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=21.75 E-value=1.4e+02 Score=27.52 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
...|.+|..+|++||.+|++++..
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777665544
No 298
>PRK14155 heat shock protein GrpE; Provisional
Probab=21.70 E-value=2.1e+02 Score=24.33 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
+....+..|.+|+..++....+++.|.+-+|++..
T Consensus 17 ~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~ 51 (208)
T PRK14155 17 DAAQEIEALKAEVAALKDQALRYAAEAENTKRRAE 51 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888888887777777777777776644
No 299
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.63 E-value=1.8e+02 Score=25.22 Aligned_cols=19 Identities=26% Similarity=0.109 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 027513 194 AFVGLIGIMVGLILNLLLS 212 (222)
Q Consensus 194 ~lv~ll~~llG~~l~~~~~ 212 (222)
++++++.+++|.++++++.
T Consensus 32 l~a~l~~~~v~v~ig~l~~ 50 (224)
T PF13829_consen 32 LGAFLGPIAVFVLIGLLFG 50 (224)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3333344444444444443
No 300
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=21.46 E-value=1.5e+02 Score=17.59 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 027513 192 FAAFVGLIGIMVGLIL 207 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l 207 (222)
.++.+.++|+.+||.+
T Consensus 9 i~~~lvlvGla~Gf~L 24 (31)
T PF08041_consen 9 ICFGLVLVGLALGFVL 24 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455667777777765
No 301
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.43 E-value=84 Score=23.02 Aligned_cols=15 Identities=53% Similarity=0.930 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027513 193 AAFVGLIGIMVGLIL 207 (222)
Q Consensus 193 ~~lv~ll~~llG~~l 207 (222)
+.+|+|+|+++||=+
T Consensus 31 iAlvGllGilvGeq~ 45 (93)
T COG4317 31 IALVGLLGILVGEQI 45 (93)
T ss_pred HHHHHHHHHHHHHHH
Confidence 459999999999843
No 302
>COG4836 Predicted membrane protein [Function unknown]
Probab=21.17 E-value=1.5e+02 Score=21.14 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=15.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 027513 186 RGFSLMFAAFVGLIGIMVGLILN 208 (222)
Q Consensus 186 ~g~sl~~~~lv~ll~~llG~~l~ 208 (222)
.|......+++.+++++|||.+.
T Consensus 37 k~~~tQa~llmI~vtI~lg~~vs 59 (77)
T COG4836 37 KGKVTQARLLMIFVTIALGYAVS 59 (77)
T ss_pred cCchhHHHHHHHHHHHHHHHHHH
Confidence 34555666777788888887654
No 303
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=21.10 E-value=80 Score=26.38 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred CeEEEEeeeCCCCceEeeCCeeeeCCCCeeEecc
Q 027513 39 HHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRA 72 (222)
Q Consensus 39 ~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~ 72 (222)
|+|+||+ |.+.-|.||+++++.+
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~ 138 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDM 138 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeE
Confidence 7888888 8999999999999984
No 304
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.08 E-value=1.9e+02 Score=21.98 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=4.2
Q ss_pred HHHHHhhhcc
Q 027513 203 VGLILNLLLS 212 (222)
Q Consensus 203 lG~~l~~~~~ 212 (222)
||-++.-|.|
T Consensus 96 LGQYIeNLMS 105 (120)
T KOG3650|consen 96 LGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHh
Confidence 4444444433
No 305
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.90 E-value=2.3e+02 Score=23.04 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhh
Q 027513 197 GLIGIMVGLILNL 209 (222)
Q Consensus 197 ~ll~~llG~~l~~ 209 (222)
+++..+++.++++
T Consensus 160 g~i~~~~a~~la~ 172 (177)
T PF07798_consen 160 GVIFGCVALVLAI 172 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 306
>TIGR01707 gspI general secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=20.54 E-value=1.4e+02 Score=22.29 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=15.6
Q ss_pred CchHHH-HHHHHHHHHHHHHHHhhh
Q 027513 187 GFSLMF-AAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 187 g~sl~~-~~lv~ll~~llG~~l~~~ 210 (222)
||+|+= ++.++|+|+++.-+++.+
T Consensus 1 GFTLiEvlvAlaI~ai~~~~~~~~~ 25 (101)
T TIGR01707 1 GFTLLEVLVALAIFAAAALALISSV 25 (101)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 677654 466677777776666654
No 307
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=20.46 E-value=34 Score=22.95 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027513 189 SLMFAAFVGLIGIMVGL 205 (222)
Q Consensus 189 sl~~~~lv~ll~~llG~ 205 (222)
+++++++++|+|++.|+
T Consensus 4 p~~llllvlllGla~s~ 20 (56)
T PF08138_consen 4 PIFLLLLVLLLGLAQSW 20 (56)
T ss_dssp -----------------
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 45566677777777764
No 308
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.45 E-value=1.9e+02 Score=25.58 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
..+..+.+|..+|++|+.+|++++..+.+
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~ 94 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQ 94 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 309
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.41 E-value=6.3e+02 Score=22.68 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 027513 194 AFVGLIGIMVGLILNLL 210 (222)
Q Consensus 194 ~lv~ll~~llG~~l~~~ 210 (222)
++.+++|++++.++.++
T Consensus 337 ~~~~~~gl~l~~~~~l~ 353 (362)
T TIGR01010 337 LATFVILLILYGVLSLL 353 (362)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 310
>PHA02657 hypothetical protein; Provisional
Probab=20.23 E-value=1.4e+02 Score=22.09 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027513 190 LMFAAFVGLIGIMVGLILNL 209 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~ 209 (222)
..+++.+++++++|-|+.+.
T Consensus 31 tvfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 31 TIFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888887763
No 311
>COG2431 Predicted membrane protein [Function unknown]
Probab=20.19 E-value=1.1e+02 Score=27.59 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=24.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 027513 185 VRGFSLMFAAFVGLIGIMVGLILNLLLSSP 214 (222)
Q Consensus 185 ~~g~sl~~~~lv~ll~~llG~~l~~~~~~~ 214 (222)
.+++...-.+.++++|+++||+.+-.+.-|
T Consensus 101 s~~~~s~k~~~~vl~g~~~G~l~~~~~~~~ 130 (297)
T COG2431 101 SMALESIKLLGVVLLGLALGLLTGSFLNFP 130 (297)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhcccccCc
Confidence 456666678999999999999999887654
No 312
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.13 E-value=5.7e+02 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 027513 190 LMFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~~~ 211 (222)
.+++++.+++|+++|..+-++.
T Consensus 431 ~~~l~~~~~~gl~lg~~~a~l~ 452 (754)
T TIGR01005 431 GPIVGLAAVLGLLLGAIFALLR 452 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666555543
No 313
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=20.04 E-value=1.9e+02 Score=24.68 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=29.6
Q ss_pred EEEEEcCCCCeEEEE-eeeCCCCceEeeCCeeeeCCCCeeEeccc
Q 027513 30 DLKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRAQ 73 (222)
Q Consensus 30 ~l~L~N~s~~~VaFK-VKTT~P~~Y~VrP~~Gii~P~~s~~I~~~ 73 (222)
.|++.|+|..+|.|- ++... +. +. +.|.|.|+++..+.+.
T Consensus 158 ~l~v~NptPyyitl~~l~~~~-~~--~~-~~~mI~P~s~~~~~~~ 198 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLNS-HE--VK-SATFVPPKSSASFKLG 198 (226)
T ss_pred EEEEECCCceEEEEEEEEECC-cc--cC-CCceECCCCccEEEcc
Confidence 499999999999875 55432 22 32 3589999999988753
Done!