Query 027513
Match_columns 222
No_of_seqs 194 out of 732
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:40:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 9.3E-35 3.2E-39 232.9 15.7 124 6-132 11-138 (147)
2 1z9l_A Vesicle-associated memb 100.0 2.7E-34 9.3E-39 224.9 14.4 119 4-125 5-127 (128)
3 1wic_A Hypothetical protein ri 100.0 9.3E-35 3.2E-39 234.2 8.5 122 6-130 15-141 (152)
4 1msp_A MSP, major sperm protei 100.0 6.8E-31 2.3E-35 205.4 15.4 116 6-125 5-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 2.3E-27 7.8E-32 181.1 11.7 102 10-123 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 1.9E-26 6.4E-31 177.5 14.1 105 7-123 8-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.3 2.1E-06 7.3E-11 65.3 9.0 82 6-90 22-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.0 2.6E-05 8.9E-10 57.8 8.6 72 3-74 3-78 (112)
9 3qbt_B Inositol polyphosphate 97.8 0.00011 3.6E-09 57.6 9.3 67 6-72 23-96 (140)
10 3qis_A Inositol polyphosphate 97.3 0.001 3.4E-08 59.7 9.7 66 6-71 26-98 (366)
11 2qsv_A Uncharacterized protein 94.6 0.12 4E-06 42.7 7.9 63 10-73 3-66 (220)
12 2qsv_A Uncharacterized protein 93.8 0.25 8.5E-06 40.7 8.3 65 7-73 117-182 (220)
13 3c3g_A Alpha/beta peptide with 86.4 1.7 5.7E-05 25.3 4.6 28 152-179 2-29 (33)
14 3q48_A Chaperone CUPB2; IG fol 86.2 4.2 0.00015 34.4 9.3 82 9-95 29-123 (257)
15 3m48_A General control protein 85.8 1.1 3.8E-05 26.1 3.7 27 153-179 3-29 (33)
16 3c3f_A Alpha/beta peptide with 84.5 2.3 7.9E-05 24.8 4.6 28 152-179 3-30 (34)
17 2oxj_A Hybrid alpha/beta pepti 83.7 2.4 8.2E-05 24.7 4.5 28 152-179 3-30 (34)
18 1uo4_A General control protein 83.3 1.8 6.2E-05 25.3 3.9 28 152-179 3-30 (34)
19 2co7_B SAFB chaperone, putativ 81.2 11 0.00037 31.0 9.6 82 9-95 13-102 (221)
20 2xg5_A PAPD, chaperone protein 81.1 20 0.00068 29.3 11.1 104 10-127 2-118 (218)
21 2bni_A General control protein 81.0 2.5 8.5E-05 24.7 3.9 28 152-179 3-30 (34)
22 1kd8_B GABH BLL, GCN4 acid bas 80.9 3.7 0.00013 24.2 4.6 28 152-179 3-30 (36)
23 2wq1_A General control protein 80.6 4 0.00014 23.6 4.6 28 152-179 2-29 (33)
24 4dzn_A Coiled-coil peptide CC- 79.5 5.4 0.00018 22.5 4.8 26 152-177 4-29 (33)
25 2akf_A Coronin-1A; coiled coil 78.8 1.9 6.5E-05 24.4 2.8 28 153-180 2-29 (32)
26 2wuj_A Septum site-determining 78.3 2.8 9.7E-05 27.3 4.0 33 146-178 23-55 (57)
27 4djm_A DRAB; chaperone, PILI; 78.3 13 0.00046 30.9 9.3 82 9-95 23-112 (239)
28 1kd8_A GABH AIV, GCN4 acid bas 78.1 3.4 0.00012 24.4 3.9 27 153-179 4-30 (36)
29 2yy0_A C-MYC-binding protein; 76.6 5.6 0.00019 25.6 5.0 30 151-180 20-49 (53)
30 2r2v_A GCN4 leucine zipper; co 75.9 6.6 0.00023 22.9 4.6 28 152-179 3-30 (34)
31 2hy6_A General control protein 75.8 4.4 0.00015 23.6 3.9 27 153-179 4-30 (34)
32 1dh3_A Transcription factor CR 75.8 5.3 0.00018 25.7 4.8 30 150-179 22-51 (55)
33 1l4i_A SFAE protein; periplasm 74.4 30 0.001 28.0 10.2 108 10-128 2-119 (206)
34 1scf_A Stem cell factor; steel 74.2 0.64 2.2E-05 39.3 0.0 26 186-211 211-236 (273)
35 1klf_A FIMC chaperone, chapero 73.4 34 0.0012 27.6 11.0 81 10-95 2-92 (205)
36 1nlw_A MAD protein, MAX dimeri 73.4 7.2 0.00025 27.0 5.3 34 147-180 44-77 (80)
37 1t6f_A Geminin; coiled-coil, c 72.9 4.1 0.00014 24.1 3.3 21 150-170 14-34 (37)
38 2dgc_A Protein (GCN4); basic d 72.8 7.1 0.00024 25.9 5.0 30 151-180 31-60 (63)
39 3s9g_A Protein hexim1; cyclin 72.1 6.5 0.00022 28.6 4.9 31 150-180 65-95 (104)
40 1nkp_B MAX protein, MYC proto- 71.6 8.2 0.00028 26.6 5.3 34 147-180 44-77 (83)
41 2wg5_A General control protein 70.1 5.4 0.00019 29.3 4.3 28 152-179 9-36 (109)
42 1fmh_A General control protein 69.3 12 0.0004 21.1 4.5 27 152-178 3-29 (33)
43 1a93_B MAX protein, coiled coi 69.2 8.9 0.00031 22.4 4.2 25 150-174 7-31 (34)
44 1hjb_A Ccaat/enhancer binding 68.5 10 0.00036 26.8 5.3 27 153-179 46-72 (87)
45 2wt7_A Proto-oncogene protein 67.2 12 0.00041 24.5 5.2 29 151-179 24-52 (63)
46 4ay0_A Chaperone protein CAF1M 67.1 50 0.0017 26.9 11.9 82 9-95 13-104 (218)
47 3gfu_C Chaperone protein FAEE; 65.8 43 0.0015 27.6 9.4 81 10-95 2-92 (224)
48 1t2k_D Cyclic-AMP-dependent tr 65.6 15 0.00052 23.8 5.4 29 151-179 23-51 (61)
49 3rfr_A PMOB; membrane, oxidore 65.4 25 0.00085 31.7 8.3 62 7-71 281-363 (419)
50 1jnm_A Proto-oncogene C-JUN; B 64.0 15 0.00052 23.9 5.2 30 151-180 23-52 (62)
51 3ra3_B P2F; coiled coil domain 64.0 7 0.00024 21.2 2.8 16 161-176 4-19 (28)
52 1gu4_A CAAT/enhancer binding p 63.7 14 0.00048 25.6 5.1 26 153-178 46-71 (78)
53 1yew_A Particulate methane mon 63.2 35 0.0012 30.4 8.8 61 9-71 249-331 (382)
54 1t2k_D Cyclic-AMP-dependent tr 63.2 16 0.00056 23.6 5.2 32 148-179 27-58 (61)
55 2r39_A FIXG-related protein; s 62.1 37 0.0013 24.6 7.6 45 27-71 33-78 (118)
56 1ci6_A Transcription factor AT 61.5 19 0.00066 23.6 5.3 28 152-179 25-52 (63)
57 2wt7_B Transcription factor MA 61.4 18 0.0006 25.8 5.4 28 152-179 57-84 (90)
58 3m91_A Proteasome-associated A 61.0 13 0.00044 23.7 4.1 23 154-176 27-49 (51)
59 3v86_A De novo design helix; c 60.0 13 0.00045 20.0 3.4 23 154-176 4-26 (27)
60 1go4_E MAD1 (mitotic arrest de 59.0 19 0.00065 26.2 5.3 29 150-178 12-40 (100)
61 2jee_A YIIU; FTSZ, septum, coi 58.2 22 0.00075 24.9 5.3 27 149-175 19-45 (81)
62 2huh_A Putative DNA mismatch r 57.9 27 0.00093 27.1 6.3 65 28-96 29-94 (147)
63 3mq7_A Bone marrow stromal ant 57.8 17 0.00058 27.2 4.9 29 152-180 73-101 (121)
64 3w03_C DNA repair protein XRCC 57.2 16 0.00053 29.5 5.0 23 153-175 155-177 (184)
65 1ci6_A Transcription factor AT 57.0 24 0.00082 23.1 5.2 30 149-178 29-58 (63)
66 1am9_A Srebp-1A, protein (ster 56.9 21 0.00073 24.5 5.2 30 147-176 47-76 (82)
67 2wt7_A Proto-oncogene protein 55.5 28 0.00095 22.7 5.3 31 149-179 29-59 (63)
68 2ww9_B Protein transport prote 55.2 13 0.00045 26.0 3.7 11 201-211 62-72 (80)
69 3hd7_B Syntaxin-1A; membrane p 55.0 57 0.0019 23.6 8.1 22 190-211 87-108 (109)
70 1nkp_A C-MYC, MYC proto-oncoge 54.4 17 0.00059 25.5 4.4 31 148-178 50-80 (88)
71 1rh5_B Preprotein translocase 53.6 9.7 0.00033 26.2 2.8 15 198-212 46-60 (74)
72 3hd7_A Vesicle-associated memb 53.5 55 0.0019 22.9 7.3 19 192-210 70-88 (91)
73 1jnm_A Proto-oncogene C-JUN; B 53.3 13 0.00045 24.2 3.4 32 148-179 27-58 (62)
74 1uii_A Geminin; human, DNA rep 52.2 29 0.001 24.3 5.1 26 153-178 49-74 (83)
75 3kin_B Kinesin heavy chain; mo 51.7 20 0.0007 26.4 4.6 30 148-177 87-116 (117)
76 1nkp_A C-MYC, MYC proto-oncoge 50.7 33 0.0011 24.0 5.3 25 152-176 61-85 (88)
77 3m9b_A Proteasome-associated A 48.9 15 0.00051 31.0 3.8 27 153-179 71-97 (251)
78 2yy0_A C-MYC-binding protein; 48.2 23 0.0008 22.5 3.8 26 149-174 25-50 (53)
79 1hlo_A Protein (transcription 48.0 20 0.00067 24.5 3.7 22 150-171 57-78 (80)
80 1nkp_B MAX protein, MYC proto- 47.5 19 0.00066 24.6 3.7 27 153-179 43-69 (83)
81 3hn9_A Lamin-B1; structural ge 47.2 24 0.00081 26.4 4.4 43 29-72 25-73 (123)
82 1hjb_A Ccaat/enhancer binding 46.9 29 0.00098 24.5 4.5 28 153-180 39-66 (87)
83 2zxx_A Geminin; coiled-coil, c 46.9 27 0.00093 24.2 4.2 19 153-171 44-62 (79)
84 2jee_A YIIU; FTSZ, septum, coi 46.5 45 0.0015 23.2 5.4 17 162-178 53-69 (81)
85 3mp7_B Preprotein translocase 46.5 18 0.00061 23.9 3.1 16 197-212 41-56 (61)
86 1gu4_A CAAT/enhancer binding p 46.3 31 0.0011 23.8 4.5 28 153-180 39-66 (78)
87 2w6b_A RHO guanine nucleotide 45.9 47 0.0016 21.4 4.9 26 150-175 10-35 (56)
88 3nmd_A CGMP dependent protein 45.1 27 0.00092 23.8 3.9 24 154-177 44-67 (72)
89 1nlw_A MAD protein, MAX dimeri 45.1 26 0.0009 24.1 4.0 30 150-179 40-69 (80)
90 3a2a_A Voltage-gated hydrogen 44.8 37 0.0013 21.9 4.3 27 154-180 22-48 (58)
91 1gd2_E Transcription factor PA 43.8 34 0.0012 23.1 4.3 21 152-172 31-51 (70)
92 2ls4_A High affinity copper up 48.9 5.1 0.00018 22.0 0.0 16 192-207 4-19 (26)
93 1p9i_A Cortexillin I/GCN4 hybr 42.0 37 0.0013 18.7 3.4 23 154-176 3-25 (31)
94 1dip_A Delta-sleep-inducing pe 41.5 33 0.0011 23.6 3.9 31 151-181 16-46 (78)
95 1use_A VAsp, vasodilator-stimu 39.5 46 0.0016 20.6 4.0 28 151-178 8-37 (45)
96 1dip_A Delta-sleep-inducing pe 38.7 42 0.0014 23.0 4.1 27 146-172 18-44 (78)
97 3efg_A Protein SLYX homolog; x 38.7 59 0.002 22.2 5.0 32 150-181 28-59 (78)
98 1wm3_A Ubiquitin-like protein 38.6 27 0.00094 23.0 3.2 21 30-50 3-23 (72)
99 3hnw_A Uncharacterized protein 38.5 35 0.0012 26.0 4.2 8 167-174 113-120 (138)
100 3q4f_C DNA repair protein XRCC 38.3 32 0.0011 27.7 4.0 28 151-178 155-182 (186)
101 2oa5_A Hypothetical protein BQ 38.3 19 0.00066 26.6 2.5 22 152-173 10-31 (110)
102 3ra3_A P1C; coiled coil domain 38.2 29 0.001 18.7 2.6 22 155-176 5-26 (28)
103 2w6a_A ARF GTPase-activating p 38.0 74 0.0025 20.8 5.0 21 157-177 27-47 (63)
104 1gd2_E Transcription factor PA 37.3 30 0.001 23.4 3.2 29 150-178 36-64 (70)
105 3s4r_A Vimentin; alpha-helix, 37.1 71 0.0024 22.5 5.4 25 154-178 67-91 (93)
106 2jwa_A Receptor tyrosine-prote 36.8 28 0.00095 21.5 2.7 16 193-208 21-36 (44)
107 1zxa_A CGMP-dependent protein 36.6 40 0.0014 22.6 3.7 29 151-179 26-54 (67)
108 3w03_C DNA repair protein XRCC 36.0 55 0.0019 26.2 5.1 31 150-180 145-175 (184)
109 1deb_A APC protein, adenomatou 36.0 50 0.0017 20.9 3.8 21 154-174 7-27 (54)
110 1wlq_A Geminin; coiled-coil; 2 35.3 39 0.0013 23.6 3.6 24 154-177 42-65 (83)
111 3trt_A Vimentin; cytoskeleton, 34.7 73 0.0025 21.2 5.0 24 154-177 53-76 (77)
112 1uii_A Geminin; human, DNA rep 34.6 51 0.0018 23.0 4.1 19 160-178 49-67 (83)
113 3bo0_B Preprotein translocase 34.3 93 0.0032 20.0 5.6 21 191-211 37-57 (65)
114 2w6a_A ARF GTPase-activating p 34.3 54 0.0018 21.5 3.9 24 154-177 38-61 (63)
115 3jt0_A Lamin-B1; structural ge 34.3 48 0.0016 25.5 4.4 43 29-72 38-86 (144)
116 1a93_A Coiled coil, LZ, MYC pr 34.1 66 0.0023 18.7 3.9 25 152-176 9-33 (34)
117 2dgc_A Protein (GCN4); basic d 33.7 44 0.0015 21.9 3.5 22 151-172 38-59 (63)
118 1go4_E MAD1 (mitotic arrest de 33.7 68 0.0023 23.2 4.8 30 146-175 15-44 (100)
119 2v66_B Nuclear distribution pr 33.5 80 0.0027 23.2 5.3 26 147-172 32-57 (111)
120 2wt7_B Transcription factor MA 33.3 77 0.0026 22.4 5.0 28 152-179 50-77 (90)
121 3vmx_A Voltage-gated hydrogen 33.0 91 0.0031 19.5 5.3 28 153-180 14-41 (48)
122 2io0_B Small ubiquitin-related 32.6 40 0.0014 23.6 3.4 23 28-50 5-27 (91)
123 2l5g_B Putative uncharacterize 32.5 85 0.0029 19.1 5.2 33 147-179 6-38 (42)
124 2ks1_B Epidermal growth factor 31.7 37 0.0013 20.8 2.7 16 193-208 21-36 (44)
125 1wlq_A Geminin; coiled-coil; 2 30.6 82 0.0028 22.0 4.6 22 158-179 39-60 (83)
126 3viq_B Mating-type switching p 30.4 77 0.0026 22.2 4.5 26 154-179 5-30 (85)
127 4emc_A Monopolin complex subun 30.3 88 0.003 25.2 5.4 27 153-179 30-56 (190)
128 2zvf_A Alanyl-tRNA synthetase; 30.3 96 0.0033 23.5 5.6 31 147-177 29-59 (171)
129 3mtu_E Head morphogenesis prot 30.2 81 0.0028 21.7 4.5 26 150-175 44-69 (77)
130 1hlo_A Protein (transcription 29.9 80 0.0028 21.3 4.5 29 151-179 51-79 (80)
131 3ndz_E Endoglucanase D; cellot 29.8 91 0.0031 22.5 5.0 48 24-71 14-82 (107)
132 2xdj_A Uncharacterized protein 29.6 1.2E+02 0.004 21.0 5.3 26 152-177 29-54 (83)
133 3viq_A SWI5-dependent recombin 29.4 72 0.0025 23.8 4.5 26 154-179 4-29 (122)
134 1rtm_1 Mannose-binding protein 29.4 59 0.002 23.8 4.1 25 155-179 2-26 (149)
135 2wvr_A Geminin; DNA replicatio 29.2 85 0.0029 25.6 5.1 26 153-178 118-143 (209)
136 1jcd_A Major outer membrane li 28.2 1.2E+02 0.004 19.2 4.8 20 152-171 13-32 (52)
137 1gmj_A ATPase inhibitor; coile 27.7 93 0.0032 21.7 4.5 23 157-179 51-73 (84)
138 2l2t_A Receptor tyrosine-prote 27.6 48 0.0017 20.3 2.7 15 194-208 21-35 (44)
139 3e38_A Two-domain protein cont 27.3 74 0.0025 27.7 4.9 65 29-96 270-334 (343)
140 2q6q_A Spindle POLE BODY compo 27.3 1.4E+02 0.0046 20.1 5.0 31 149-179 23-53 (74)
141 2xzz_A Protein-glutamine gamma 27.1 1.7E+02 0.0057 20.8 6.0 57 16-73 9-70 (102)
142 2io1_B Small ubiquitin-related 25.9 72 0.0025 22.2 3.8 23 28-50 7-29 (94)
143 3arc_T Photosystem II reaction 25.7 1E+02 0.0034 17.6 3.7 24 196-219 7-30 (32)
144 2d07_B Ubiquitin-like protein 25.6 62 0.0021 22.5 3.4 24 27-50 16-39 (93)
145 3twe_A Alpha4H; unknown functi 25.6 84 0.0029 16.7 3.3 16 163-178 7-22 (27)
146 2l5g_A GPS2 protein, G protein 25.2 1.1E+02 0.0038 18.0 5.2 21 152-172 10-30 (38)
147 3kyd_D Small ubiquitin-related 24.6 63 0.0022 23.8 3.4 24 27-50 39-62 (115)
148 4gio_A Putative lipoprotein; u 24.6 1.5E+02 0.0051 21.3 5.4 48 24-71 35-88 (107)
149 4emc_A Monopolin complex subun 24.3 1.1E+02 0.0036 24.7 4.8 32 150-181 20-51 (190)
150 2z5i_A TM, general control pro 23.9 1.4E+02 0.0048 18.7 4.8 25 151-175 20-44 (52)
151 4e61_A Protein BIM1; EB1-like 23.7 1.5E+02 0.0052 21.6 5.2 23 151-173 19-41 (106)
152 3din_D Preprotein translocase 22.8 65 0.0022 21.1 2.9 19 193-211 41-59 (65)
153 3tnu_B Keratin, type II cytosk 22.7 1.6E+02 0.0054 21.7 5.4 30 146-175 39-68 (129)
154 3q48_A Chaperone CUPB2; IG fol 22.5 85 0.0029 26.2 4.2 44 28-73 172-217 (257)
155 3mud_A DNA repair protein XRCC 22.2 1.2E+02 0.0042 24.0 4.8 23 152-174 144-166 (175)
156 4hci_A Cupredoxin 1; structura 22.0 1.9E+02 0.0065 19.6 6.4 50 12-73 25-74 (100)
157 2w83_C C-JUN-amino-terminal ki 21.8 1.9E+02 0.0064 19.8 5.0 27 153-179 40-66 (77)
158 3nrf_A APAG protein; structura 21.8 2.1E+02 0.0071 20.8 5.6 46 26-71 28-83 (106)
159 3dl8_C SECE; RECA-type ATPase 21.4 73 0.0025 20.8 2.9 20 192-211 40-59 (65)
160 3q4f_C DNA repair protein XRCC 21.4 1.5E+02 0.0051 23.7 5.1 25 149-173 160-184 (186)
161 1ifr_A Lamin A/C; immunoglobul 21.1 1.8E+02 0.0061 21.4 5.3 43 29-72 19-68 (121)
162 1bb1_B Designed, thermostable 20.9 1.3E+02 0.0043 17.1 4.5 25 153-177 5-29 (36)
163 1wz0_A Ubiquitin-like protein 20.9 77 0.0026 22.6 3.2 24 27-50 23-46 (104)
164 4ani_A Protein GRPE; chaperone 20.9 1.5E+02 0.0053 24.1 5.3 33 149-181 65-97 (213)
165 1bxv_A Plastocyanin; copper pr 20.8 1.7E+02 0.0057 19.1 4.8 53 10-72 14-66 (91)
166 3a4r_A Nfatc2-interacting prot 20.7 84 0.0029 21.0 3.2 23 28-50 7-30 (79)
167 3tnu_A Keratin, type I cytoske 20.7 1.8E+02 0.006 21.5 5.3 31 145-175 40-70 (131)
168 3isy_A Bsupi, intracellular pr 20.5 2.2E+02 0.0074 21.0 5.7 33 24-56 17-49 (120)
169 4etp_A Kinesin-like protein KA 20.5 1.4E+02 0.0049 26.4 5.5 21 151-171 11-31 (403)
170 3vta_A Cucumisin; subtilisin-l 20.3 1.5E+02 0.0051 27.7 5.8 46 10-56 567-612 (621)
171 2zt9_E Cytochrome B6-F complex 20.1 1.2E+02 0.004 17.2 3.1 17 193-209 9-25 (31)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=9.3e-35 Score=232.89 Aligned_cols=124 Identities=30% Similarity=0.561 Sum_probs=109.3
Q ss_pred CCccEEEecC-eeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEec--ccc-CCCCCCC
Q 027513 6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR--AQR-ESPPDMQ 81 (222)
Q Consensus 6 ~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~--~~~-~~~~~~~ 81 (222)
..++|.|+|. +|.|.+++++.+++.|+|+|+++++||||||||+|++|||||++|+|+||++++|. ++. +.+++++
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p~~~ 90 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDPNEK 90 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCTTCC
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCcccc
Confidence 3579999997 99999999999999999999999999999999999999999999999999999998 453 4456678
Q ss_pred CCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEcCCCCCCC
Q 027513 82 CKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSAQG 132 (222)
Q Consensus 82 ~~dKFlVqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~~~~p~~~~~ 132 (222)
|+|||+||++.++++. .++ .++|++..+..++++||||+|+.|.+++.
T Consensus 91 ~kDKFlVqs~~~~~~~--~d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~~ 138 (147)
T 2cri_A 91 SKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFEMPNENDK 138 (147)
T ss_dssp SCCCEEEEEEECCTTC--CCH-HHHHHHSCTTTCEEEEEEEEEECSCCSSC
T ss_pred CCCEEEEEEEEcCCCc--ccH-HHHhhcCCCCceEEEEEEEEEecCCCCcc
Confidence 9999999999999864 355 47777777889999999999999887643
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=2.7e-34 Score=224.94 Aligned_cols=119 Identities=31% Similarity=0.563 Sum_probs=105.4
Q ss_pred CCCCccEEEecC-eeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEec--ccc-CCCCC
Q 027513 4 DGGNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR--AQR-ESPPD 79 (222)
Q Consensus 4 ~~~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~--~~~-~~~~~ 79 (222)
....++|.|+|. +|.|.+++++.+++.|+|+|+|+++||||||||+|++|||||++|+|+||++++|. ++. +.+++
T Consensus 5 ~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~~p~ 84 (128)
T 1z9l_A 5 AKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDPN 84 (128)
T ss_dssp CSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCCCTT
T ss_pred CCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcCCcc
Confidence 445689999997 99999999999999999999999999999999999999999999999999999998 453 44566
Q ss_pred CCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEc
Q 027513 80 MQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYV 125 (222)
Q Consensus 80 ~~~~dKFlVqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~~~ 125 (222)
++|+|||+||++.++++. .|+ .++|++..+..++++||||+|.
T Consensus 85 ~~~~dkF~V~s~~~~~~~--~~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 85 EKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp CCCCCEEEEEEEECCTTC--SCH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccCCEEEEEEEECCCCc--chH-HHHhhcCCCCceEEEEEEEEEe
Confidence 789999999999999864 355 4778777788999999999996
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=9.3e-35 Score=234.19 Aligned_cols=122 Identities=27% Similarity=0.351 Sum_probs=107.0
Q ss_pred CCccEEEecC-eeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEec--cccCCCCCCCC
Q 027513 6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR--AQRESPPDMQC 82 (222)
Q Consensus 6 ~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~--~~~~~~~~~~~ 82 (222)
+.++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++||||||.|+|+||++++|. +|... +..+
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~--~~~~ 92 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGL--TVSA 92 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSS--CCCS
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCcc--cCCC
Confidence 3579999998 99999999999999999999999999999999999999999999999999999998 44322 2378
Q ss_pred CCeEEEEEEecC--CCCCCCCCCCCcccccCCCcceEEEeEEEEcCCCCC
Q 027513 83 KDKFLLQSTIVP--SNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPSSA 130 (222)
Q Consensus 83 ~dKFlVqs~~~~--~~~~~~di~~~~f~k~~~~~i~e~kL~~~~~~p~~~ 130 (222)
+|||+||++.++ ++.+.+|+. ++|++..+..++++||||+|+.+.++
T Consensus 93 kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p 141 (152)
T 1wic_A 93 QDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKP 141 (152)
T ss_dssp SCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSS
T ss_pred CCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCC
Confidence 999999999999 555555664 77777778899999999999988776
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.97 E-value=6.8e-31 Score=205.41 Aligned_cols=116 Identities=17% Similarity=0.328 Sum_probs=99.1
Q ss_pred CCccEEEecC-eeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEec--ccc--CCCCCC
Q 027513 6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR--AQR--ESPPDM 80 (222)
Q Consensus 6 ~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~--~~~--~~~~~~ 80 (222)
....|.++|. +|.|++|+++.+++.|+|+|+|+++||||||||+|++|||||++|+|+||+++.|. +|. ..+++
T Consensus 5 ~~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~- 83 (126)
T 1msp_A 5 PPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED- 83 (126)
T ss_dssp CCCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC-
T ss_pred CCCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc-
Confidence 4568999998 99999999999999999999999999999999999999999999999999999998 453 22333
Q ss_pred CCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEc
Q 027513 81 QCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYV 125 (222)
Q Consensus 81 ~~~dKFlVqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~~~ 125 (222)
..+|||+||++.++++.+ +|+..+||.+ ...+..++|+|.|.
T Consensus 84 ~~kDKf~Vq~~~~p~~~~-~~~~~~wf~~--d~~~~~k~L~V~Yn 125 (126)
T 1msp_A 84 LNNDRITIEWTNTPDGAA-KQFRREWFQG--DGMVRRKNLPIEYN 125 (126)
T ss_dssp CSSCEEEEEEEECCTTCC-SSCCTHHHHS--SSCCEEEEEEEEEE
T ss_pred cCCCEEEEEEEECCCCcc-hhhhHHhhcC--CCceEEEEEEEEec
Confidence 359999999999999864 5786554433 34689999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=2.3e-27 Score=181.09 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=83.3
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEecc--ccCCCCCCCCCCeEE
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRA--QRESPPDMQCKDKFL 87 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~--~~~~~~~~~~~dKFl 87 (222)
|.|+|.+|.|.++ ..++.|+|+|+|+++||||||||+|++|||||++|+|+||++++|.+ |.. + .++|||+
T Consensus 3 L~i~P~~l~F~~~---~~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~-~---~~~dKfl 75 (109)
T 1row_A 3 LTADPPACTVPAA---GVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG-A---PKEDKLV 75 (109)
T ss_dssp CEEESSSEEEETT---CEEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC-C---CEEEEEE
T ss_pred EEEECCEeEEeCC---CCeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC-C---CCCCEEE
Confidence 7899999999986 34799999999999999999999999999999999999999999983 432 2 3699999
Q ss_pred EEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEE
Q 027513 88 LQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVV 123 (222)
Q Consensus 88 Vqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~ 123 (222)
||++.++++. .|. .++|++..+ ..+.+|++.
T Consensus 76 vq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 76 VHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 9999998763 244 466766433 455666653
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=1.9e-26 Score=177.51 Aligned_cols=105 Identities=23% Similarity=0.378 Sum_probs=86.8
Q ss_pred CccEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEecc--ccCCCCCCCCCC
Q 027513 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRA--QRESPPDMQCKD 84 (222)
Q Consensus 7 ~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~--~~~~~~~~~~~d 84 (222)
..++.++|.+|.|+++ ..++.|+|+|+|+++||||||||+|++|||||++|+|+||++++|.+ |.. + .++|
T Consensus 8 ~~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~-~---~k~D 80 (116)
T 1m1s_A 8 HSMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG-P---PKED 80 (116)
T ss_dssp CCSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC-C---SCEE
T ss_pred ceeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC-C---CCCC
Confidence 3689999999999974 45999999999999999999999999999999999999999999983 333 3 3699
Q ss_pred eEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEE
Q 027513 85 KFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVV 123 (222)
Q Consensus 85 KFlVqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~ 123 (222)
||+||++.++++. .|. .++|++..+ ..+.+|++.
T Consensus 81 KflVq~~~~~~d~--~d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 81 KIVIQYAEVPAEE--TDP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEECTTC--CCT-THHHHTTCC--CEEEEEEEE
T ss_pred EEEEEEEECCCCC--CCH-HHHHhcCCC--CceEEEEEE
Confidence 9999999998753 244 466766433 577777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=2.1e-06 Score=65.34 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=60.5
Q ss_pred CCccEEEecCeeEEec-ccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEeccccCCCCCCCCCC
Q 027513 6 GNQLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQRESPPDMQCKD 84 (222)
Q Consensus 6 ~~~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~~~~~~~~~~~~d 84 (222)
....|.+ |..|.|.. +.+...+..+.|+|.++.++.|++++.+ -|.|.|+.|.|.||+++.|.+.+..........
T Consensus 22 ~~~~l~~-p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F~P~~~g~~~~ 98 (122)
T 2ys4_A 22 ARAILDF-PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEFEPQSVGDHSG 98 (122)
T ss_dssp CCCCCCC-CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEECCSSSBCCCC
T ss_pred CCcEECC-CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEEEcCCCccEEE
Confidence 3344455 66787765 4467778999999999999999999854 699999999999999999996643221223455
Q ss_pred eEEEEE
Q 027513 85 KFLLQS 90 (222)
Q Consensus 85 KFlVqs 90 (222)
.+.|..
T Consensus 99 ~l~v~~ 104 (122)
T 2ys4_A 99 RLIVCY 104 (122)
T ss_dssp BCEEEE
T ss_pred EEEEEE
Confidence 555554
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.01 E-value=2.6e-05 Score=57.82 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=59.0
Q ss_pred CCCCCccEEEecCeeEEec-ccCCeeEeEEEEEcCCCCeEEEEeeeCCC---CceEeeCCeeeeCCCCeeEecccc
Q 027513 3 ADGGNQLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTTSP---KKYFVRPNTGVVQPWDSCIIRAQR 74 (222)
Q Consensus 3 ~~~~~~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT~P---~~Y~VrP~~Gii~P~~s~~I~~~~ 74 (222)
+.+..+.+.+++..|.|-. ..+...++.++|+|.++.+..|++..... ..|.+.|..|.|.||++..|.+..
T Consensus 3 G~~~~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f 78 (112)
T 2e6j_A 3 SGSSGPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF 78 (112)
T ss_dssp SSCCCCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred CccCCCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence 3445678999999888865 34677889999999999999999964221 469999999999999999999664
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.82 E-value=0.00011 Score=57.59 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=56.8
Q ss_pred CCccEEEecCeeEEec-ccCCeeEeEEEEEcCCCCeEEEEeeeC------CCCceEeeCCeeeeCCCCeeEecc
Q 027513 6 GNQLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTT------SPKKYFVRPNTGVVQPWDSCIIRA 72 (222)
Q Consensus 6 ~~~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT------~P~~Y~VrP~~Gii~P~~s~~I~~ 72 (222)
.-+.+.+++.+|.|.. .+....++.|+|+|++.-+.-|++.-. .+.-+.|.|..|.|.||+++.|.+
T Consensus 23 ~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v 96 (140)
T 3qbt_B 23 FLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISL 96 (140)
T ss_dssp TSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEE
T ss_pred cCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEE
Confidence 3477889999999975 456788999999999999999998853 345688999999999999999983
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.31 E-value=0.001 Score=59.75 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCccEEEecCeeEEec-ccCCeeEeEEEEEcCCCCeEEEEeeeCCCC------ceEeeCCeeeeCCCCeeEec
Q 027513 6 GNQLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTTSPK------KYFVRPNTGVVQPWDSCIIR 71 (222)
Q Consensus 6 ~~~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~------~Y~VrP~~Gii~P~~s~~I~ 71 (222)
.-+.+.|++.++.|.. .+....+..|+|+|++.-+..|++.....+ -+.|.|..|.|.||+++.|.
T Consensus 26 ~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~ 98 (366)
T 3qis_A 26 FLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDIS 98 (366)
T ss_dssp --CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEE
T ss_pred cCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEE
Confidence 4477899999999964 567888999999999999999999865322 26699999999999999998
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.58 E-value=0.12 Score=42.71 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=52.9
Q ss_pred EEEecCeeEEecc-cCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEeccc
Q 027513 10 ISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQ 73 (222)
Q Consensus 10 L~i~P~eL~F~~~-~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~~ 73 (222)
|.++|..+.|.-- .++.....++++|.++.++-++.-.. |..+..++..+.|.||++..|.+.
T Consensus 3 i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt 66 (220)
T 2qsv_A 3 LQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLS 66 (220)
T ss_dssp EEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEE
T ss_pred eEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEE
Confidence 7899999999762 34556779999999999999987544 888899999999999999988844
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=93.76 E-value=0.25 Score=40.68 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=54.1
Q ss_pred CccEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEE-EeeeCCCCceEeeCCeeeeCCCCeeEeccc
Q 027513 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAF-KVKTTSPKKYFVRPNTGVVQPWDSCIIRAQ 73 (222)
Q Consensus 7 ~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaF-KVKTT~P~~Y~VrP~~Gii~P~~s~~I~~~ 73 (222)
.+.+.++ ..+.|-.-.+...++.++|+|..+.++.+ +|+|++ +...+.++.+.|.||++..|.+.
T Consensus 117 ~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~ 182 (220)
T 2qsv_A 117 TGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIA 182 (220)
T ss_dssp CCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEE
T ss_pred CCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEE
Confidence 3557778 77888642267778999999999999988 888886 78899999999999999999855
No 13
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=86.42 E-value=1.7 Score=25.26 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..|.+....+..+|..|++|..+||..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3578888889999999999999998864
No 14
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=86.17 E-value=4.2 Score=34.36 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=56.8
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCC----------CceEeeCCeeeeCCCCeeEeccc--cC-
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRAQ--RE- 75 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P----------~~Y~VrP~~Gii~P~~s~~I~~~--~~- 75 (222)
-|.|+|..+.|+. +....+|+|+|.++.++.-.++...- .-|.|-|+.-.|+||+...|.+. .+
T Consensus 29 ~v~i~~TRvIy~~---~~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~~ 105 (257)
T 3q48_A 29 GLIAQGTRVVFPA---SEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKAP 105 (257)
T ss_dssp --CCSCSEEEEET---TCSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCCC
T ss_pred eEEEcceEEEEeC---CCcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCCC
Confidence 3667777888886 34468999999999988877665431 13999999999999999988843 22
Q ss_pred CCCCCCCCCeEEEEEEecCC
Q 027513 76 SPPDMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 76 ~~~~~~~~dKFlVqs~~~~~ 95 (222)
.|.|.. .-|-+....+|+
T Consensus 106 LP~DrE--Slf~lnv~eIPp 123 (257)
T 3q48_A 106 LPTDRE--SLFWLNILEVPP 123 (257)
T ss_dssp CCSSSC--EEEEEEEEEECC
T ss_pred CCCCce--eEEEEEeeecCC
Confidence 344422 346565566665
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.84 E-value=1.1 Score=26.08 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..|.++...|..+|..|++|..+||.-
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 467888889999999999999998864
No 16
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=84.51 E-value=2.3 Score=24.79 Aligned_cols=28 Identities=0% Similarity=0.130 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..|.+....+..+|..|++|..+||..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4578888899999999999999998864
No 17
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=83.66 E-value=2.4 Score=24.74 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..|.+....|..+|..|++|..+||..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4578888889999999999999998864
No 18
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=83.32 E-value=1.8 Score=25.30 Aligned_cols=28 Identities=11% Similarity=0.373 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..|.++...+..+|..|++|..+||.-
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3578888889999999999999999864
No 19
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=81.18 E-value=11 Score=30.98 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=58.7
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCC-----CCceEeeCCeeeeCCCCeeEeccc--c-CCCCCC
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRAQ--R-ESPPDM 80 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~-----P~~Y~VrP~~Gii~P~~s~~I~~~--~-~~~~~~ 80 (222)
-|.+++..+.|+.. ....+|+|+|.++.++.-.++... ..-|-|-|+.-.|+||+...|.+. . ..|.|.
T Consensus 13 ~v~i~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~lP~Dr 89 (221)
T 2co7_B 13 SVKLGATRVIYHAG---TAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDR 89 (221)
T ss_dssp ECEESCSEEEEETT---SSCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCCCCCSSS
T ss_pred EEEEcceEEEEcCC---CCEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCCCCCCCc
Confidence 46788888999863 446799999999988877765532 125999999999999999999843 2 234442
Q ss_pred CCCCeEEEEEEecCC
Q 027513 81 QCKDKFLLQSTIVPS 95 (222)
Q Consensus 81 ~~~dKFlVqs~~~~~ 95 (222)
..-|-+....+|+
T Consensus 90 --Eslf~lnv~eIPp 102 (221)
T 2co7_B 90 --ETLQWVCIKAVPP 102 (221)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEeecCCC
Confidence 2356666666665
No 20
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=81.13 E-value=20 Score=29.31 Aligned_cols=104 Identities=13% Similarity=0.212 Sum_probs=67.5
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCC-eEEEEeeeCC-------CCceEeeCCeeeeCCCCeeEeccc--c---CC
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRAQ--R---ES 76 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~-------P~~Y~VrP~~Gii~P~~s~~I~~~--~---~~ 76 (222)
|.+++..+.|+.. .....|+|+|.++. ++.-.++... ..-|-|-|+.-.|+||+...|.+. . ..
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCC---CCEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 5677888888873 45789999999988 8777765543 234999999999999999998832 2 23
Q ss_pred CCCCCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEcCC
Q 027513 77 PPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSP 127 (222)
Q Consensus 77 ~~~~~~~dKFlVqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~~~~p 127 (222)
|.|. ..-|-+....+|+... + +..=......+|++-|-+.
T Consensus 79 P~Dr--ESlf~lnv~eIPp~~~--~-------~n~lqia~r~rIKlFyRP~ 118 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPPRSE--K-------ANVLQIALQTKIKLFYRPA 118 (218)
T ss_dssp CSSS--CEEEEEEEEEECCCCC--C-------TTEEEEEEEEEEEEEEECG
T ss_pred CCCc--eEEEEEEeecCCCCCC--C-------CceEEEEehheeeEEEcCc
Confidence 5442 2355555556665311 1 0001123567777777643
No 21
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=81.00 E-value=2.5 Score=24.71 Aligned_cols=28 Identities=11% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
++.|.+....+..++..|++|..+||.-
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3578888889999999999999999864
No 22
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=80.95 E-value=3.7 Score=24.25 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..|.+....|..++..|++|..+||..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4578888889999999999999998865
No 23
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.60 E-value=4 Score=23.62 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..|.+.+..+..++..|++|..+||..
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3578888888999999999999988864
No 24
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=79.54 E-value=5.4 Score=22.45 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
|..|+.|+..++.|+..|+=|+..|+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655554
No 25
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=78.79 E-value=1.9 Score=24.40 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
++|.|++..+..-.++||+.+++|....
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999888888899999988887543
No 26
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=78.32 E-value=2.8 Score=27.26 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 146 PDANSALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 146 ~e~~~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+....+..+.++...+.+||..|++++..++.
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678889999999999999999999887664
No 27
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=78.25 E-value=13 Score=30.91 Aligned_cols=82 Identities=17% Similarity=0.189 Sum_probs=56.5
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCC-----CCceEeeCCeeeeCCCCeeEeccc--cC-CCCCC
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRAQ--RE-SPPDM 80 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~-----P~~Y~VrP~~Gii~P~~s~~I~~~--~~-~~~~~ 80 (222)
-|.|.+..+.|+.. .....|+|+|.++.++.-.++... ..-|.|-|+.-.|+||+...|.+. .. .|.|.
T Consensus 23 ~v~l~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~~LP~DR 99 (239)
T 4djm_A 23 SLHLGATRVVYNPA---SSGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGGEFPPDR 99 (239)
T ss_dssp CCEESCSEEEECTT---SSCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSCCCCSSS
T ss_pred eEEEcceEEEEeCC---CCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCc
Confidence 35688888888863 346899999999888766655321 224999999999999999988842 22 35442
Q ss_pred CCCCeEEEEEEecCC
Q 027513 81 QCKDKFLLQSTIVPS 95 (222)
Q Consensus 81 ~~~dKFlVqs~~~~~ 95 (222)
..-|-+....+|+
T Consensus 100 --ESlf~lnv~eIPp 112 (239)
T 4djm_A 100 --ESLQWICVKGIPP 112 (239)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEEEecCC
Confidence 2345555555554
No 28
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=78.06 E-value=3.4 Score=24.39 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..|.++...+..++..|++|..+||..
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 477888888999999999999888864
No 29
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.61 E-value=5.6 Score=25.56 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
.+..|+.|...|++++..|+++.+.++++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888887777653
No 30
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=75.86 E-value=6.6 Score=22.88 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..|.++...+..++..|++|+.+||..
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567788888889999999999988864
No 31
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=75.79 E-value=4.4 Score=23.61 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..|.+....|..+|..|++|..+||..
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467888888999999999999998864
No 32
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=75.76 E-value=5.3 Score=25.75 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..+..|..+...|..||..|.+++..|+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999888754
No 33
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=74.44 E-value=30 Score=27.95 Aligned_cols=108 Identities=12% Similarity=0.196 Sum_probs=66.3
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCC-CeEEEEeeeCC-----CCceEeeCCeeeeCCCCeeEeccc-c---CCCCC
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRAQ-R---ESPPD 79 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~VaFKVKTT~-----P~~Y~VrP~~Gii~P~~s~~I~~~-~---~~~~~ 79 (222)
|.+++..+.|+. +....+|+|+|.++ .++.-.++... -.-|-|-|+.-.|+||+...|.+. . ..|.|
T Consensus 2 v~l~~TRvIy~~---~~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~lP~D 78 (206)
T 1l4i_A 2 VALGATRVIYPE---GQKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATNGQMPED 78 (206)
T ss_dssp EEESCSEEEEET---TCSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCTTCSCSS
T ss_pred eEeCceEEEEeC---CCcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCCCCCCC
Confidence 567778888887 34578999999986 78777665532 135999999999999999998843 2 23444
Q ss_pred CCCCCeEEEEEEecCCCCCCCCCCCCcccccCCCcceEEEeEEEEcCCC
Q 027513 80 MQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVYVSPS 128 (222)
Q Consensus 80 ~~~~dKFlVqs~~~~~~~~~~di~~~~f~k~~~~~i~e~kL~~~~~~p~ 128 (222)
.. .-|-+....+|+.....+ + +..=......+|++-|-+..
T Consensus 79 rE--slf~lnv~eIPp~~~~~~---~---~n~lqia~r~riKlFyRP~~ 119 (206)
T 1l4i_A 79 RE--SLFWVNVKAIPAMDKAKT---G---ENYLQFAIVSRIKLLYRPQG 119 (206)
T ss_dssp SC--EEEEEEEEEEECCC--------------CCCEEEEEEEEEEECTT
T ss_pred ce--EEEEEEeecCCCCccccc---C---CceEEEEhhheeeEEEeccc
Confidence 22 245555555554211000 0 00012235778887776543
No 34
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=74.19 E-value=0.64 Score=39.32 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhc
Q 027513 186 RGFSLMFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 186 ~g~sl~~~~lv~ll~~llG~~l~~~~ 211 (222)
.+.++..+++.+|++++||+++|+|.
T Consensus 211 ~slq~~~~~l~al~slvigf~~ga~~ 236 (273)
T 1scf_A 211 SSLHWAAMALPALFSLIIGFAFGALY 236 (273)
T ss_dssp --------------------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33456667799999999999999985
No 35
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=73.42 E-value=34 Score=27.55 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=57.4
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCC-eEEEEeeeCC-----CCceEeeCCeeeeCCCCeeEeccc---c-CCCCC
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRAQ---R-ESPPD 79 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~-----P~~Y~VrP~~Gii~P~~s~~I~~~---~-~~~~~ 79 (222)
+.+++..+.|+.. ....+|+|+|.++. ++.-.++... ..-|-|-|+.-.|+||+...|.+. . ..|.|
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~lP~D 78 (205)
T 1klf_A 2 VALGATRVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNNQLPQD 78 (205)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCSCSCSS
T ss_pred eEecceEEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCCCCCCC
Confidence 5677888888873 45789999999988 8776665532 235999999999999999998832 2 23444
Q ss_pred CCCCCeEEEEEEecCC
Q 027513 80 MQCKDKFLLQSTIVPS 95 (222)
Q Consensus 80 ~~~~dKFlVqs~~~~~ 95 (222)
. ..-|-+....+|+
T Consensus 79 r--Eslf~lnv~eIPp 92 (205)
T 1klf_A 79 R--ESLFWMNVKAIPS 92 (205)
T ss_dssp S--CEEEEEEEEEECC
T ss_pred c--eEEEEEEeEecCC
Confidence 2 2356666666665
No 36
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=73.37 E-value=7.2 Score=27.05 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
.|...|..|+++..++.++++.|+.+...|+++.
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888888888887777653
No 37
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=72.88 E-value=4.1 Score=24.08 Aligned_cols=21 Identities=10% Similarity=0.185 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQ 170 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~ 170 (222)
..|...++|+++|+++|..|+
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 344555666666666666654
No 38
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=72.80 E-value=7.1 Score=25.86 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
.+..|..+...|..+|..|..++..||...
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999988653
No 39
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=72.10 E-value=6.5 Score=28.56 Aligned_cols=31 Identities=13% Similarity=0.182 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
+.|..|.+|+.+|+.||+.|.+|-...|+..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~~~~~ 95 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELHRQQE 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3456788888888888888888888777653
No 40
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=71.64 E-value=8.2 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
.+...|..|+++...+.++...|+++...|+++.
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888887777654
No 41
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=70.08 E-value=5.4 Score=29.26 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
++.|++++..+++|+.++++|++.|+..
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999864
No 42
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=69.33 E-value=12 Score=21.06 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
+..|..|..++..||-+|++|...|..
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 457788888999999999999877754
No 43
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=69.23 E-value=8.9 Score=22.43 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLD 174 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~ 174 (222)
......+.+++.++.||..|+++.-
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 3445678888999999999998753
No 44
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.54 E-value=10 Score=26.82 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..|..|...|+.++..|++|+..||..
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666665543
No 45
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.20 E-value=12 Score=24.54 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+..|.++...|..+|..|+.++..|+..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888877777654
No 46
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=67.08 E-value=50 Score=26.90 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=57.5
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCC------C-CceEeeCCeeeeCCCCeeEeccc--c-CCCC
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS------P-KKYFVRPNTGVVQPWDSCIIRAQ--R-ESPP 78 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~------P-~~Y~VrP~~Gii~P~~s~~I~~~--~-~~~~ 78 (222)
-|.|+-..+.|+. +....+|+|+|.++.++.-..+... + .-|-|-|+.-.|+||+...|.+. . ..|.
T Consensus 13 gv~l~~TRvIy~~---~~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~~LP~ 89 (218)
T 4ay0_A 13 GVTIGESRIIYPL---DAAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPR 89 (218)
T ss_dssp CEEESCCEEEEET---TCSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSCCCCS
T ss_pred eEEECceEEEECC---CCcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCCCCCc
Confidence 4677777888876 3446889999999988776655421 1 24999999999999999999843 2 2244
Q ss_pred CCCCCCeEEEEEEecCC
Q 027513 79 DMQCKDKFLLQSTIVPS 95 (222)
Q Consensus 79 ~~~~~dKFlVqs~~~~~ 95 (222)
|. ..-|-+....+|+
T Consensus 90 DR--ESlf~lnv~eIPp 104 (218)
T 4ay0_A 90 DK--ESLKWLCVKGIPP 104 (218)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--EEEEEEEEEecCC
Confidence 41 2236666666665
No 47
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=65.80 E-value=43 Score=27.57 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=52.0
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCC-eEEEEeeeCC------CCceEeeCCeeeeCCCCeeEeccc--c-CCCCC
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS------PKKYFVRPNTGVVQPWDSCIIRAQ--R-ESPPD 79 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT~------P~~Y~VrP~~Gii~P~~s~~I~~~--~-~~~~~ 79 (222)
+.++...+.|+.. .....|+|+|.++. ++.-.++... ..-|.|-|+.-.|+||+...|.+. . ..|.|
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~~LP~D 78 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASDHLPKD 78 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSCCCCSS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCC
Confidence 3455667888763 44689999999875 5544443221 124999999999999999988732 2 23444
Q ss_pred CCCCCeEEEEEEecCC
Q 027513 80 MQCKDKFLLQSTIVPS 95 (222)
Q Consensus 80 ~~~~dKFlVqs~~~~~ 95 (222)
. ..-|-+....+|+
T Consensus 79 R--ESlf~lnv~eIPp 92 (224)
T 3gfu_C 79 K--ESVYWLNLQDIPP 92 (224)
T ss_dssp S--CEEEEEEEEEECC
T ss_pred c--eEEEEEEeecCCC
Confidence 2 2345555555554
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=65.56 E-value=15 Score=23.80 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+..|..+...+..+|..|+.++..|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666665544
No 49
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=65.44 E-value=25 Score=31.71 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=46.6
Q ss_pred CccEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEe---------------------eCCeeeeCCC
Q 027513 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFV---------------------RPNTGVVQPW 65 (222)
Q Consensus 7 ~~lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~V---------------------rP~~Gii~P~ 65 (222)
...+.++-..-+|.- .++..+-+++++|.++.+|-..==+|+.-+|.= .|+ -|.||
T Consensus 281 ~~~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG 357 (419)
T 3rfr_A 281 KEQVTTELNGGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG 357 (419)
T ss_dssp SCCCEEEEEEEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred CCceEEEEeceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence 345666666667775 568999999999999999998866676666541 233 59999
Q ss_pred CeeEec
Q 027513 66 DSCIIR 71 (222)
Q Consensus 66 ~s~~I~ 71 (222)
++.+|+
T Consensus 358 ETrt~~ 363 (419)
T 3rfr_A 358 ESKEIV 363 (419)
T ss_dssp CEEEEE
T ss_pred cceEEE
Confidence 999886
No 50
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=63.98 E-value=15 Score=23.89 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
.+..|..+...+..+|..|+.++..|+...
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888877777653
No 51
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=63.97 E-value=7 Score=21.20 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027513 161 AAVRQTQLLQQDLDML 176 (222)
Q Consensus 161 ~l~~en~~L~~el~~l 176 (222)
++++.|.+|+||+..|
T Consensus 4 rlkqknarlkqeiaal 19 (28)
T 3ra3_B 4 RLKQKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHH
Confidence 4445555555555444
No 52
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=63.71 E-value=14 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
..|..|...|+.++..|++|+..||.
T Consensus 46 ~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 46 LELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555553
No 53
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=63.25 E-value=35 Score=30.40 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=44.3
Q ss_pred cEEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceE----------------------eeCCeeeeCCCC
Q 027513 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYF----------------------VRPNTGVVQPWD 66 (222)
Q Consensus 9 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~----------------------VrP~~Gii~P~~ 66 (222)
.+.++-..-+|.- .++..+-+++++|.++.+|-..==+|+.-+|. |.|+ .=|.||+
T Consensus 249 ~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI~PGE 326 (382)
T 1yew_A 249 TVSVKVEDATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPLAPGE 326 (382)
T ss_dssp SEEEEEEEEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCBCTTC
T ss_pred ceEEEeeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCcCCCc
Confidence 4555555566665 56889999999999999999887777766663 3333 2378999
Q ss_pred eeEec
Q 027513 67 SCIIR 71 (222)
Q Consensus 67 s~~I~ 71 (222)
+.+|.
T Consensus 327 Tr~~~ 331 (382)
T 1yew_A 327 TRTVD 331 (382)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 98885
No 54
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=63.18 E-value=16 Score=23.64 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 148 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 148 ~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
....+..|..+...|..++..|++|+..|+..
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888888888887753
No 55
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=62.12 E-value=37 Score=24.58 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=35.0
Q ss_pred eEeEEEEEcCCCCeEEEEeeeCCCCceEee-CCeeeeCCCCeeEec
Q 027513 27 GFCDLKVINNTEHHVAFKVKTTSPKKYFVR-PNTGVVQPWDSCIIR 71 (222)
Q Consensus 27 ~~~~l~L~N~s~~~VaFKVKTT~P~~Y~Vr-P~~Gii~P~~s~~I~ 71 (222)
....|+|.|.+.++..|.++.....-+.+. |..=.|+||+...+.
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~ 78 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLP 78 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEE
Confidence 468999999999999999998875446543 554577899987765
No 56
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.49 E-value=19 Score=23.61 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..|..+...|.++|..|+.++..|+..
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655544
No 57
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=61.38 E-value=18 Score=25.84 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
...|..|+..+.+|+.++..|++.++++
T Consensus 57 ~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666554
No 58
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=60.98 E-value=13 Score=23.73 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~l 176 (222)
+|.+.+..+++|+.+|+++++.|
T Consensus 27 rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 27 KLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555556666666665544
No 59
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=59.99 E-value=13 Score=19.95 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~l 176 (222)
.|.+|.-.++-|.+.|++|...|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 56777777777788888776544
No 60
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.03 E-value=19 Score=26.16 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
..+..|..+++.|..|+.+|+++.+.|..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888888888877766553
No 61
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=58.22 E-value=22 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
..+|..|+-|+..|+++|..|.++...
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655554433
No 62
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=57.86 E-value=27 Score=27.09 Aligned_cols=65 Identities=11% Similarity=0.207 Sum_probs=51.7
Q ss_pred EeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEec-cccCCCCCCCCCCeEEEEEEecCCC
Q 027513 28 FCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR-AQRESPPDMQCKDKFLLQSTIVPSN 96 (222)
Q Consensus 28 ~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~-~~~~~~~~~~~~dKFlVqs~~~~~~ 96 (222)
.-..-|.|.|+..+.|-.-+..-+.+.+| ..|.|+|+..+-|. ...+ +.....+|.||.+.-..+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~---eln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKD---VLNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGG---GGGGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChh---HhcCCceEEEEEEEEcCC
Confidence 45788999999999999999888888887 78999999999998 3322 122356899999888663
No 63
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.84 E-value=17 Score=27.16 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
+++|+.|+..|.++.+....|+++||+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666777777666666667777888654
No 64
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=57.22 E-value=16 Score=29.53 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~ 175 (222)
..|+++..++++||++|++|...
T Consensus 155 ~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 155 AENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555443
No 65
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=56.98 E-value=24 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
...+..|..+...|..++..|+.|...|+.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888877764
No 66
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=56.90 E-value=21 Score=24.54 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~l 176 (222)
++...|..|+.+...|.+++..|++++...
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567788888888888888888776543
No 67
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.55 E-value=28 Score=22.72 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
...+..|..+...|..++..|++|...|+..
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888888888777643
No 68
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=55.21 E-value=13 Score=25.95 Aligned_cols=11 Identities=18% Similarity=0.467 Sum_probs=8.6
Q ss_pred HHHHHHHhhhc
Q 027513 201 IMVGLILNLLL 211 (222)
Q Consensus 201 ~llG~~l~~~~ 211 (222)
-+|||++++++
T Consensus 62 G~IGfiIkLI~ 72 (80)
T 2ww9_B 62 GIIGYAIKLIH 72 (80)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36799988876
No 69
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=55.03 E-value=57 Score=23.55 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 027513 190 LMFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 190 l~~~~lv~ll~~llG~~l~~~~ 211 (222)
++.++++++++++++.++++.|
T Consensus 87 ~i~l~~~~i~~~i~~~~~~~~~ 108 (109)
T 3hd7_B 87 IMIIICCVILGIIIASTIGGIF 108 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-
T ss_pred eehHHHHHHHHHHHHHHhcccc
Confidence 3344455566666666666543
No 70
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=54.40 E-value=17 Score=25.48 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 148 ANSALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 148 ~~~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
|...|..|+++...+..+...|+++-..|++
T Consensus 50 A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 50 ATAYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665555555555544444443
No 71
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=53.63 E-value=9.7 Score=26.18 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhcc
Q 027513 198 LIGIMVGLILNLLLS 212 (222)
Q Consensus 198 ll~~llG~~l~~~~~ 212 (222)
++--+|||++++++.
T Consensus 46 ~imG~IGfiIkli~i 60 (74)
T 1rh5_B 46 SLLGIIGYIIHVPAT 60 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333467888887763
No 72
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=53.49 E-value=55 Score=22.91 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 027513 192 FAAFVGLIGIMVGLILNLL 210 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~ 210 (222)
+.++++++.+++-|++-+.
T Consensus 70 ~~iii~~iv~~il~ii~~~ 88 (91)
T 3hd7_A 70 MMIILGVICAIILIIIIVY 88 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 73
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=53.34 E-value=13 Score=24.24 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 148 ANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 148 ~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
....+..|..+...|..++..|++|+..|+..
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888888888888888777643
No 74
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.19 E-value=29 Score=24.29 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+|.+++..+.+++..|+++.+.||.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666655554
No 75
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=51.74 E-value=20 Score=26.44 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 148 ANSALQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 148 ~~~~i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
....+.+..+++..++++++.|+.|+.++|
T Consensus 87 l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 87 WKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556777778888888999999988876
No 76
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=50.65 E-value=33 Score=23.99 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~l 176 (222)
...+.+++..++++|..|++++..|
T Consensus 61 ~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 61 EQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555444
No 77
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.95 E-value=15 Score=31.04 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+|.+++..+++|+.+|++|++.|++-
T Consensus 71 e~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 71 SKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457888888888888888888888753
No 78
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.20 E-value=23 Score=22.54 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLD 174 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~ 174 (222)
......|+.++..|.++++.|+.++.
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888888888888888877653
No 79
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=47.99 E-value=20 Score=24.48 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQ 171 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~ 171 (222)
..|..|+++...+.+++..|++
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555544444444444443
No 80
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=47.49 E-value=19 Score=24.64 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
....+=+..|.++++.|++|.+.|++.
T Consensus 43 ~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 43 DKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666666555544
No 81
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=47.19 E-value=24 Score=26.36 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCeEE---EEeeeCCCC---ceEeeCCeeeeCCCCeeEecc
Q 027513 29 CDLKVINNTEHHVA---FKVKTTSPK---KYFVRPNTGVVQPWDSCIIRA 72 (222)
Q Consensus 29 ~~l~L~N~s~~~Va---FKVKTT~P~---~Y~VrP~~Gii~P~~s~~I~~ 72 (222)
..++|.|.+++.+. |+++-...+ .|+. |..=+|+||+++.|-.
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtVwa 73 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTIWA 73 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEEEE
Confidence 47899999887775 777755443 4554 5555999999999983
No 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.92 E-value=29 Score=24.48 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
..+..+...|.+||..|+.+++.|++..
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677888899999999999888764
No 83
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=46.88 E-value=27 Score=24.25 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQ 171 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~ 171 (222)
..+++|++.++++|..|++
T Consensus 44 e~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 44 EQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 84
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.52 E-value=45 Score=23.22 Aligned_cols=17 Identities=12% Similarity=0.179 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027513 162 AVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 162 l~~en~~L~~el~~lr~ 178 (222)
+.++|++|++|...++.
T Consensus 53 L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 53 LERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666666554443
No 85
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=46.46 E-value=18 Score=23.86 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhcc
Q 027513 197 GLIGIMVGLILNLLLS 212 (222)
Q Consensus 197 ~ll~~llG~~l~~~~~ 212 (222)
.++--+|||++++++.
T Consensus 41 ~~i~G~iGf~Ikli~~ 56 (61)
T 3mp7_B 41 IILIGLIGMLIRIVGI 56 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334457888888763
No 86
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=46.35 E-value=31 Score=23.80 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
..+..+...|.+||..|+.++..|++..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677888899999999999888764
No 87
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=45.93 E-value=47 Score=21.40 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
.++=.|.+|.+.|++++++|++-++.
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557889999999999998876653
No 88
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.08 E-value=27 Score=23.84 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr 177 (222)
.|..+++....+++.|+.+++.+|
T Consensus 44 eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 44 ELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444445555554443
No 89
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=45.06 E-value=26 Score=24.09 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..+.+..+=+..+.+++.+|++|.+.||+.
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777777655
No 90
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=44.82 E-value=37 Score=21.95 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
.|-++++.|..++.+..||..+|++-.
T Consensus 22 ~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 22 QLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888888899998888654
No 91
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.79 E-value=34 Score=23.10 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQD 172 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~e 172 (222)
|..|..++..+...+..|..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~e 51 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLE 51 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333
No 92
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=48.86 E-value=5.1 Score=22.04 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027513 192 FAAFVGLIGIMVGLIL 207 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l 207 (222)
.+++.+++|..+||++
T Consensus 4 ~l~iavvlGa~~Gyf~ 19 (26)
T 2ls4_A 4 YLCIAVAAGAGTGYFL 19 (26)
Confidence 3556667777778775
No 93
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=42.02 E-value=37 Score=18.72 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~l 176 (222)
.|.+-+..+..||++|+...+.|
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888765543
No 94
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=41.47 E-value=33 Score=23.56 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
++.-|++.+..|.+.|.+|+.|-..||....
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888888888888888888888887544
No 95
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=39.50 E-value=46 Score=20.57 Aligned_cols=28 Identities=21% Similarity=0.448 Sum_probs=17.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHH-HHHHH
Q 027513 151 ALQRLKDER-DAAVRQTQLLQQDL-DMLKR 178 (222)
Q Consensus 151 ~i~~L~eE~-~~l~~en~~L~~el-~~lr~ 178 (222)
.+.++++|+ ...++|.+++++|+ +.+|.
T Consensus 8 dle~~KqEIL~E~RkElqK~K~EIIeAi~~ 37 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKEEIIEAFVQ 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554 55677788888775 34444
No 96
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=38.74 E-value=42 Score=23.01 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 146 PDANSALQRLKDERDAAVRQTQLLQQD 172 (222)
Q Consensus 146 ~e~~~~i~~L~eE~~~l~~en~~L~~e 172 (222)
...+..|..|.+..++|..||.-|++-
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778999999999999999999973
No 97
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.74 E-value=59 Score=22.23 Aligned_cols=32 Identities=16% Similarity=-0.018 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
.+|..|.+.+.+..+++.+|+.++..|+.+..
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777888888888888877653
No 98
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=38.58 E-value=27 Score=22.96 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=17.1
Q ss_pred EEEEEcCCCCeEEEEeeeCCC
Q 027513 30 DLKVINNTEHHVAFKVKTTSP 50 (222)
Q Consensus 30 ~l~L~N~s~~~VaFKVKTT~P 50 (222)
.|++...+.+.|.|||+.|.|
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 577787778889999988876
No 99
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.46 E-value=35 Score=25.96 Aligned_cols=8 Identities=13% Similarity=0.505 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027513 167 QLLQQDLD 174 (222)
Q Consensus 167 ~~L~~el~ 174 (222)
..|++++.
T Consensus 113 ~~l~~~~~ 120 (138)
T 3hnw_A 113 KELKSEIN 120 (138)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 100
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=38.32 E-value=32 Score=27.67 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.|...-..++.++.+|.+|++|-++|.+
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555543
No 101
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=38.26 E-value=19 Score=26.55 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el 173 (222)
+.+|.+|+.+|+-||+.|++.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999998865
No 102
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.16 E-value=29 Score=18.71 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 155 LKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 155 L~eE~~~l~~en~~L~~el~~l 176 (222)
|.-|.+.+.+.+..|+|.+..|
T Consensus 5 lefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHh
Confidence 3334444545555555554443
No 103
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=37.95 E-value=74 Score=20.84 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027513 157 DERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 157 eE~~~l~~en~~L~~el~~lr 177 (222)
+.+.+|.+-|..|.+|+-.+.
T Consensus 27 AkiQQLmkVN~~ls~Elr~mQ 47 (63)
T 2w6a_A 27 AKVQQLMKVNSSLSDELRKLQ 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhHHHHHHH
Confidence 334444444444444443333
No 104
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.35 E-value=30 Score=23.39 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
..+..|..+...+..+|..|++++..|+.
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666677777666666554
No 105
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.08 E-value=71 Score=22.51 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+..|+.++.-|...|++++..+|.
T Consensus 67 ~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 67 QLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444443
No 106
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=36.77 E-value=28 Score=21.48 Aligned_cols=16 Identities=19% Similarity=0.665 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 027513 193 AAFVGLIGIMVGLILN 208 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~ 208 (222)
++++++++++++.|++
T Consensus 21 vll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhee
Confidence 3445555555555543
No 107
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=36.57 E-value=40 Score=22.62 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.|+.|+.++.....++++|+.+++.++..
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777888888888877654
No 108
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.02 E-value=55 Score=26.24 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
..+.-+.+....|+.+|.+|++|.++|++..
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999999998764
No 109
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=35.95 E-value=50 Score=20.95 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLD 174 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~ 174 (222)
.|-.+...++.||..|++|+.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344445555556666666553
No 110
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=35.28 E-value=39 Score=23.65 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr 177 (222)
+|.+++..+..|+..|+++...|+
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 111
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.73 E-value=73 Score=21.17 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr 177 (222)
..++|+..++..++.|+-|++.+|
T Consensus 53 ~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 53 QAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555555555443
No 112
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.55 E-value=51 Score=23.04 Aligned_cols=19 Identities=11% Similarity=0.281 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027513 160 DAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 160 ~~l~~en~~L~~el~~lr~ 178 (222)
..|.+++..|++|+..+++
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 113
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=34.33 E-value=93 Score=20.02 Aligned_cols=21 Identities=14% Similarity=0.100 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 027513 191 MFAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 191 ~~~~lv~ll~~llG~~l~~~~ 211 (222)
...+++.++..++|+++.++.
T Consensus 37 ~~t~vv~~~v~~i~~~i~lid 57 (65)
T 3bo0_B 37 KVTALGISLLGIIGYIIHVPA 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 455666666777777777664
No 114
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.26 E-value=54 Score=21.51 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr 177 (222)
.|.+|+..++.++++|+.|-..||
T Consensus 38 ~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhhhc
Confidence 444455555555555555544444
No 115
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=34.26 E-value=48 Score=25.45 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCeEE---EEeeeCCCC---ceEeeCCeeeeCCCCeeEecc
Q 027513 29 CDLKVINNTEHHVA---FKVKTTSPK---KYFVRPNTGVVQPWDSCIIRA 72 (222)
Q Consensus 29 ~~l~L~N~s~~~Va---FKVKTT~P~---~Y~VrP~~Gii~P~~s~~I~~ 72 (222)
..++|.|.+++.+. |+|+=...+ .|+ -|..=+|.||+++.|-.
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~-FP~~~~L~pg~~VtVwa 86 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYK-YTSRYVLKAGQTVTIWA 86 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEE-CCTTCEECTTCEEEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEE-cCCCcEECCCCEEEEEE
Confidence 47889998887764 566543332 343 45555899999999983
No 116
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=34.14 E-value=66 Score=18.66 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDML 176 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~l 176 (222)
..+|-.|...++..+++|.+.++.+
T Consensus 9 E~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 9 EQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466667777777777777766554
No 117
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.74 E-value=44 Score=21.89 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQD 172 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~e 172 (222)
.+..|..+...|..++..|+++
T Consensus 38 ~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 38 KVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 118
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.68 E-value=68 Score=23.16 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 146 PDANSALQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 146 ~e~~~~i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
......|..|..|+.+|++++..|+-++..
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999988765
No 119
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.50 E-value=80 Score=23.22 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQD 172 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~e 172 (222)
++.+.+..|+.|+..++..+..|+..
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~~l~~~ 57 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKEQLHKY 57 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777766655543
No 120
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=33.33 E-value=77 Score=22.42 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..|..|...+..|.++|++|+..+.+.
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e 77 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARE 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677777777777776666544
No 121
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=32.99 E-value=91 Score=19.50 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRRG 180 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~~ 180 (222)
..|...+..+...+..+.||..+|++-.
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4555566666677777888888877643
No 122
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=32.56 E-value=40 Score=23.56 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=18.7
Q ss_pred EeEEEEEcCCCCeEEEEeeeCCC
Q 027513 28 FCDLKVINNTEHHVAFKVKTTSP 50 (222)
Q Consensus 28 ~~~l~L~N~s~~~VaFKVKTT~P 50 (222)
.-.|+++..+...|.||||.|.|
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCh
Confidence 34778888888889999998887
No 123
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.54 E-value=85 Score=19.05 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+.-..|.+...|++...+++..||..+..|...
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334567788888888888888888877766654
No 124
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=31.75 E-value=37 Score=20.83 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 027513 193 AAFVGLIGIMVGLILN 208 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~ 208 (222)
++++++++++++||++
T Consensus 21 v~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3445555566666654
No 125
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.61 E-value=82 Score=21.98 Aligned_cols=22 Identities=9% Similarity=0.293 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027513 158 ERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 158 E~~~l~~en~~L~~el~~lr~~ 179 (222)
|..+|.+++..+++|+..|+..
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~e 60 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKE 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444
No 126
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=30.44 E-value=77 Score=22.21 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+|+.++..|.++..+|++++..++..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666555543
No 127
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.28 E-value=88 Score=25.20 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..|.+++....+|++.|+++++.+|..
T Consensus 30 ~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 30 FVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555566666666555543
No 128
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.28 E-value=96 Score=23.53 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 147 DANSALQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 147 e~~~~i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
+....+.+|.+|+..+.+++++|++++...+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778899999999999999988876543
No 129
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=30.25 E-value=81 Score=21.70 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
++|.+|.+++...++++..++++++.
T Consensus 44 KTIDDLEDkL~~eKEK~k~i~eeLDq 69 (77)
T 3mtu_E 44 SEYNDLEEKVAHAKEENLNMHQMLDQ 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677777777777777777777653
No 130
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.87 E-value=80 Score=21.26 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
.+....+=+..|.++++.|+++++.|+++
T Consensus 51 iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 51 ILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566667788889999999999988875
No 131
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=29.81 E-value=91 Score=22.46 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=32.2
Q ss_pred CCeeEeEEEEEcCCCCeEE-EEeeeC-----------------CCCceEeeCC--eeeeCC-CCeeEec
Q 027513 24 EKQGFCDLKVINNTEHHVA-FKVKTT-----------------SPKKYFVRPN--TGVVQP-WDSCIIR 71 (222)
Q Consensus 24 ~~~~~~~l~L~N~s~~~Va-FKVKTT-----------------~P~~Y~VrP~--~Gii~P-~~s~~I~ 71 (222)
.......++|+|.++.+|. ++|.=+ +-..|.|+|. .|-|.| |+++.+-
T Consensus 14 ~~Gf~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fG 82 (107)
T 3ndz_E 14 GSGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFG 82 (107)
T ss_dssp SSEEEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEE
T ss_pred CCCEEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEE
Confidence 3455778999998765543 333222 2357888864 488999 9988886
No 132
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=29.63 E-value=1.2e+02 Score=21.04 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
+..|+.|++.|+-+++.+.-++..+.
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555566666555555555555444
No 133
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=29.44 E-value=72 Score=23.77 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 154 RLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 154 ~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+|..++..|..+++.|+++|+.+++.
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777776654
No 134
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=29.39 E-value=59 Score=23.84 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 155 LKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 155 L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
|.++++.|..+.++|++++..++..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566777777788888887777654
No 135
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.21 E-value=85 Score=25.60 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKR 178 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~ 178 (222)
.+|.+++..+.+|+..|++|...||.
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555543
No 136
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.23 E-value=1.2e+02 Score=19.24 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQ 171 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~ 171 (222)
++.|..++++|..+...|+.
T Consensus 13 V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 137
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.71 E-value=93 Score=21.75 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027513 157 DERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 157 eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+|+..-+++++.|++++++.++.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777777665543
No 138
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.62 E-value=48 Score=20.33 Aligned_cols=15 Identities=7% Similarity=0.350 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q 027513 194 AFVGLIGIMVGLILN 208 (222)
Q Consensus 194 ~lv~ll~~llG~~l~ 208 (222)
+++++++++++||++
T Consensus 21 ~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 21 FILVIVGLTFAVYVR 35 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 344455555555554
No 139
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=27.31 E-value=74 Score=27.71 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEeccccCCCCCCCCCCeEEEEEEecCCC
Q 027513 29 CDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQRESPPDMQCKDKFLLQSTIVPSN 96 (222)
Q Consensus 29 ~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~~~~~~~~~~~~dKFlVqs~~~~~~ 96 (222)
.++.|+|.|+- -|.++-+.+..|.+.+..=-|+|+++..+.+..... .....=+|-|.-+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQG-IKGGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTT-CCCCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccc-ccceEEEEEeeeeeecCC
Confidence 68899998875 688889999999999999999999999998543211 112345677765555443
No 140
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=27.25 E-value=1.4e+02 Score=20.14 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
+..+..|+..+.++.+-|++|+++....++.
T Consensus 23 nvlvgslR~KLiKYtelnKKLe~~~~~~q~s 53 (74)
T 2q6q_A 23 KKIAETLRSKLEKYVDITKKLEDQNLNLQIK 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455677788888888899999988766654
No 141
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=27.14 E-value=1.7e+02 Score=20.78 Aligned_cols=57 Identities=11% Similarity=0.168 Sum_probs=37.6
Q ss_pred eeEEecc--cCCeeEeEEEEEcCCC---CeEEEEeeeCCCCceEeeCCeeeeCCCCeeEeccc
Q 027513 16 ELKFIFE--LEKQGFCDLKVINNTE---HHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQ 73 (222)
Q Consensus 16 eL~F~~~--~~~~~~~~l~L~N~s~---~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~~ 73 (222)
.++..++ .++...+.++++|+=. +...|.|--.--.+=.... .|-|.||+++.+...
T Consensus 9 ~I~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~-~~~v~pg~~~~~~~~ 70 (102)
T 2xzz_A 9 SLTLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN-VGDIGGNETVTLRQS 70 (102)
T ss_dssp EEEESSCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE-ECCBCTTCEEEEEEE
T ss_pred EEEECCCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE-cCcCCCCCEEEEEEE
Confidence 4444443 3578899999999866 5567887665443222222 477999999988843
No 142
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=25.93 E-value=72 Score=22.23 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=17.3
Q ss_pred EeEEEEEcCCCCeEEEEeeeCCC
Q 027513 28 FCDLKVINNTEHHVAFKVKTTSP 50 (222)
Q Consensus 28 ~~~l~L~N~s~~~VaFKVKTT~P 50 (222)
.-.|+++..+.+.|.|||+.|.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 45677777777788888888766
No 143
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=25.71 E-value=1e+02 Score=17.65 Aligned_cols=24 Identities=17% Similarity=0.413 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCC
Q 027513 196 VGLIGIMVGLILNLLLSSPPPTVP 219 (222)
Q Consensus 196 v~ll~~llG~~l~~~~~~~~~~~~ 219 (222)
+.++...||-++-++|---||.++
T Consensus 7 t~ll~~tlgiiFFAI~FRePPri~ 30 (32)
T 3arc_T 7 VFIFACIIALFFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCCCC
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCC
Confidence 334444444444444444444443
No 144
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=25.58 E-value=62 Score=22.48 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=17.9
Q ss_pred eEeEEEEEcCCCCeEEEEeeeCCC
Q 027513 27 GFCDLKVINNTEHHVAFKVKTTSP 50 (222)
Q Consensus 27 ~~~~l~L~N~s~~~VaFKVKTT~P 50 (222)
..-.|++...+...|.|||+.|.|
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 345777777777788888888766
No 145
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.57 E-value=84 Score=16.74 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027513 163 VRQTQLLQQDLDMLKR 178 (222)
Q Consensus 163 ~~en~~L~~el~~lr~ 178 (222)
-.|.+.||+.+-.||+
T Consensus 7 ykeledlqerlrklrk 22 (27)
T 3twe_A 7 YKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 146
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.19 E-value=1.1e+02 Score=18.04 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQD 172 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~e 172 (222)
+...++++..+..+...|++|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 147
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=24.63 E-value=63 Score=23.81 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=19.4
Q ss_pred eEeEEEEEcCCCCeEEEEeeeCCC
Q 027513 27 GFCDLKVINNTEHHVAFKVKTTSP 50 (222)
Q Consensus 27 ~~~~l~L~N~s~~~VaFKVKTT~P 50 (222)
..-.|++.......|-||||.|.|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~ 62 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTH 62 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEEcCCCCEEEEEEccCCh
Confidence 355788888878889999999887
No 148
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=24.62 E-value=1.5e+02 Score=21.32 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCC------eeeeCCCCeeEec
Q 027513 24 EKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPN------TGVVQPWDSCIIR 71 (222)
Q Consensus 24 ~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~------~Gii~P~~s~~I~ 71 (222)
+......++++|.++..+.||+.==..+-+-|.+. .=.|.+++++.|.
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~ 88 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILR 88 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEE
Confidence 45667889999999999999998777777777653 3467888888887
No 149
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.34 E-value=1.1e+02 Score=24.71 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 150 SALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 150 ~~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
..|++|+.|...|.+|++...+|+..|+++..
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~ 51 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQID 51 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777766666543
No 150
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.85 E-value=1.4e+02 Score=18.69 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
.|.+|.+++..-+.++..+.++++.
T Consensus 20 ~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 20 LVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444445555566665543
No 151
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=23.67 E-value=1.5e+02 Score=21.56 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~el 173 (222)
.+..|+++++.++.....|++|.
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkER 41 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 152
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=22.85 E-value=65 Score=21.06 Aligned_cols=19 Identities=0% Similarity=0.263 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 027513 193 AAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~~~~ 211 (222)
+++++++=.++++++++++
T Consensus 41 ~~~i~~vD~~~~~~~~~i~ 59 (65)
T 3din_D 41 SVYFFVLDFIFSGVVSAIF 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555554
No 153
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.71 E-value=1.6e+02 Score=21.66 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 146 PDANSALQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 146 ~e~~~~i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
.+.+..|+.|+.|+..++.++..|+..+..
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344566777777777777777766665543
No 154
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=22.54 E-value=85 Score=26.17 Aligned_cols=44 Identities=25% Similarity=0.227 Sum_probs=28.8
Q ss_pred EeEEEEEcCCCCeEEEE-eeeCC-CCceEeeCCeeeeCCCCeeEeccc
Q 027513 28 FCDLKVINNTEHHVAFK-VKTTS-PKKYFVRPNTGVVQPWDSCIIRAQ 73 (222)
Q Consensus 28 ~~~l~L~N~s~~~VaFK-VKTT~-P~~Y~VrP~~Gii~P~~s~~I~~~ 73 (222)
...|+++|+|..+|.|- ++-.. ...+.. ..|.|.|+++..+.+.
T Consensus 172 ~~~L~v~Nptpyyvtl~~l~~~~~~~~~~~--~~~mV~P~s~~~~~l~ 217 (257)
T 3q48_A 172 KTVVQVNNPTPYYVSFASVELIVDGRVMSV--GKGMVAPFSTKEFDWQ 217 (257)
T ss_dssp --CEEEEECSSSCEEEEEEEEEETTEEEEE--EEEEECTTEEEEECC-
T ss_pred CcEEEEECCCceEEEEEEEEEccCCeeccc--cceeEcCCceeEEecC
Confidence 34699999999999884 33322 122222 3589999999998753
No 155
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.16 E-value=1.2e+02 Score=24.00 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027513 152 LQRLKDERDAAVRQTQLLQQDLD 174 (222)
Q Consensus 152 i~~L~eE~~~l~~en~~L~~el~ 174 (222)
+.+|.+++...++++..++++|+
T Consensus 144 iD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 144 IDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 156
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=22.01 E-value=1.9e+02 Score=19.57 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=30.0
Q ss_pred EecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEeccc
Q 027513 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRAQ 73 (222)
Q Consensus 12 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~~ 73 (222)
.+|.+|+.+. ..+-.+.++|.......|-+.... ..+.+.||++..+...
T Consensus 25 F~P~~i~v~~----G~tV~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t 74 (100)
T 4hci_A 25 FNPNVITIPI----NESTTLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVK 74 (100)
T ss_dssp EESSEEEECT----TSCEEEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEEC
T ss_pred EeCCEEEECC----CCEEEEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEe
Confidence 3466555543 224566778877666666654332 2356788888877744
No 157
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.81 E-value=1.9e+02 Score=19.82 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLKRR 179 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr~~ 179 (222)
..|+.|+..++.|+..+++-..+++.+
T Consensus 40 dELt~E~e~l~~El~s~~~~~~r~~~r 66 (77)
T 2w83_C 40 DELTCEKDVLQGELEAVKQAKLKLEEK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444433
No 158
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=21.77 E-value=2.1e+02 Score=20.81 Aligned_cols=46 Identities=7% Similarity=0.166 Sum_probs=34.5
Q ss_pred eeEeEEEEEcCCCC-----eEEEEeeeCCCCceEeeC-----CeeeeCCCCeeEec
Q 027513 26 QGFCDLKVINNTEH-----HVAFKVKTTSPKKYFVRP-----NTGVVQPWDSCIIR 71 (222)
Q Consensus 26 ~~~~~l~L~N~s~~-----~VaFKVKTT~P~~Y~VrP-----~~Gii~P~~s~~I~ 71 (222)
..+..+.|.|.++. ..|||.-.-.-+.|..+- ..|.|.||+++.=.
T Consensus 28 tktFdV~vaNl~~~~idLsk~C~~a~~~~gkef~ldTVde~L~~g~lk~g~~vkG~ 83 (106)
T 3nrf_A 28 TQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGD 83 (106)
T ss_dssp EEEEEEEEECCSSSCEECTTCEEEEEETTSCEEEEEEECGGGGCSEECTTCEEEEE
T ss_pred EEEEEEEEecCCCCccccchhhheeeCcCCCEEEecccchhhhhccccCCCceeeE
Confidence 34678999998874 568888877777777664 35999999887544
No 159
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=21.40 E-value=73 Score=20.82 Aligned_cols=20 Identities=10% Similarity=0.431 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 027513 192 FAAFVGLIGIMVGLILNLLL 211 (222)
Q Consensus 192 ~~~lv~ll~~llG~~l~~~~ 211 (222)
++++++++=.++++++++++
T Consensus 40 ~~~~i~~vD~~~~~~~~~i~ 59 (65)
T 3dl8_C 40 IGVYLWILDLTFTKIISFIL 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556666555
No 160
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=21.35 E-value=1.5e+02 Score=23.71 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDL 173 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el 173 (222)
-..+..|+++...|++||++|++|-
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999999874
No 161
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=21.06 E-value=1.8e+02 Score=21.38 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCeEE---EEeeeCC---C-CceEeeCCeeeeCCCCeeEecc
Q 027513 29 CDLKVINNTEHHVA---FKVKTTS---P-KKYFVRPNTGVVQPWDSCIIRA 72 (222)
Q Consensus 29 ~~l~L~N~s~~~Va---FKVKTT~---P-~~Y~VrP~~Gii~P~~s~~I~~ 72 (222)
..++|.|.+++.+. |+++-.. + ..|. -|..=+|.||+++.|-.
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~-Fp~~~~L~pg~~vtIws 68 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYR-FPPKFTLKAGQVVTIWA 68 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEE-CCSSCEECTTCEEEEEE
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEE-eCCCcEECCCCEEEEEe
Confidence 47889998877664 5666552 2 2444 56667899999999973
No 162
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=20.92 E-value=1.3e+02 Score=17.08 Aligned_cols=25 Identities=20% Similarity=0.427 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 153 QRLKDERDAAVRQTQLLQQDLDMLK 177 (222)
Q Consensus 153 ~~L~eE~~~l~~en~~L~~el~~lr 177 (222)
...++|.....+|++..++|...++
T Consensus 5 aaikeeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777778888888876554
No 163
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.87 E-value=77 Score=22.64 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=18.9
Q ss_pred eEeEEEEEcCCCCeEEEEeeeCCC
Q 027513 27 GFCDLKVINNTEHHVAFKVKTTSP 50 (222)
Q Consensus 27 ~~~~l~L~N~s~~~VaFKVKTT~P 50 (222)
..-.|++...+...|.||||.|.|
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~ 46 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTP 46 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSC
T ss_pred CeEEEEEECCCCCEEEEEEcCCCh
Confidence 345788887777888999988877
No 164
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.86 E-value=1.5e+02 Score=24.08 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027513 149 NSALQRLKDERDAAVRQTQLLQQDLDMLKRRGQ 181 (222)
Q Consensus 149 ~~~i~~L~eE~~~l~~en~~L~~el~~lr~~~~ 181 (222)
...+..|.+++..+..+..+++.+.+-+|++..
T Consensus 65 ~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 65 KAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777776644
No 165
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=20.78 E-value=1.7e+02 Score=19.12 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=30.1
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEeeCCeeeeCCCCeeEecc
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRA 72 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~VrP~~Gii~P~~s~~I~~ 72 (222)
...+|..|+++. ++ .+++.|.+...-.|-+....|.. -..+.+.||++..++.
T Consensus 14 ~~f~P~~i~v~~--Gd----~V~~~n~~~~~H~v~~~~~~~~~----~~~~~~~~g~~~~~~f 66 (91)
T 1bxv_A 14 LAFEPSTIEIQA--GD----TVQWVNNKLAPHNVVVEGQPELS----HKDLAFSPGETFEATF 66 (91)
T ss_dssp SSEESSEEEECT--TC----EEEEEECSSCCEEEEETTCGGGC----EEEEECSTTCEEEEEC
T ss_pred cEEeCCEEEECC--CC----EEEEEECCCCCcEEEEeCCCccC----cccceeCCCCEEEEEe
Confidence 456788777764 22 45677875444444443322211 1245788998888764
No 166
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=20.75 E-value=84 Score=20.96 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=16.6
Q ss_pred EeEEEEEcCCCC-eEEEEeeeCCC
Q 027513 28 FCDLKVINNTEH-HVAFKVKTTSP 50 (222)
Q Consensus 28 ~~~l~L~N~s~~-~VaFKVKTT~P 50 (222)
.-.|++...+.+ .+.||||.|.|
T Consensus 7 ~i~ikV~~~~g~~~i~~~i~~~t~ 30 (79)
T 3a4r_A 7 ELRLRVQGKEKHQMLEISLSPDSP 30 (79)
T ss_dssp CEEEEEECSSTTCEEEEEECTTSC
T ss_pred EEEEEEEeCCCCEEEEEEECCCCh
Confidence 356777777774 78888887765
No 167
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.68 E-value=1.8e+02 Score=21.46 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=20.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027513 145 SPDANSALQRLKDERDAAVRQTQLLQQDLDM 175 (222)
Q Consensus 145 ~~e~~~~i~~L~eE~~~l~~en~~L~~el~~ 175 (222)
..+.+..|..|+.|+..++.++..|+..+..
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3566677778888887777777666655543
No 168
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=20.54 E-value=2.2e+02 Score=20.97 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=23.5
Q ss_pred CCeeEeEEEEEcCCCCeEEEEeeeCCCCceEee
Q 027513 24 EKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVR 56 (222)
Q Consensus 24 ~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~Vr 56 (222)
++...-.|+|+|+++.++-+-.-+.--=.|.|+
T Consensus 17 g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~ 49 (120)
T 3isy_A 17 PEQIKFNMSLKNQSERAIEFQFSTGQKFELVVY 49 (120)
T ss_dssp SSCEEEEEEEEECSSSCEEEEESSSCCEEEEEE
T ss_pred CCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEE
Confidence 457788999999999998887765532244444
No 169
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.50 E-value=1.4e+02 Score=26.45 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027513 151 ALQRLKDERDAAVRQTQLLQQ 171 (222)
Q Consensus 151 ~i~~L~eE~~~l~~en~~L~~ 171 (222)
.+..|++++.++.++++.++.
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~ 31 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTEL 31 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 170
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=20.27 E-value=1.5e+02 Score=27.69 Aligned_cols=46 Identities=28% Similarity=0.218 Sum_probs=0.0
Q ss_pred EEEecCeeEEecccCCeeEeEEEEEcCCCCeEEEEeeeCCCCceEee
Q 027513 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVR 56 (222)
Q Consensus 10 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~P~~Y~Vr 56 (222)
+.|+|..|.|.. .++..+.+++++........|=--|=.-+++.||
T Consensus 567 v~V~P~~l~f~~-~~~~~~~~vt~~~~~~~~~~~g~l~w~d~~h~Vr 612 (621)
T 3vta_A 567 ISVNPNVLSFNG-LGDRKSFTLTVRGSIKGFVVSASLVWSDGVHYVR 612 (621)
T ss_dssp EEEESSEEEECS-TTCEEEEEEEEEECCCSSEEEEEEEEECSSCCCE
T ss_pred EEEecCEEEEcC-CCcEEEEEEEEEecCCCceEEEEEEEEcCCEEEE
No 171
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=20.14 E-value=1.2e+02 Score=17.21 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027513 193 AAFVGLIGIMVGLILNL 209 (222)
Q Consensus 193 ~~lv~ll~~llG~~l~~ 209 (222)
.++.+..|+.+|.++++
T Consensus 9 ~~l~~~~~iA~GL~fGL 25 (31)
T 2zt9_E 9 GFLALFTGIAAGLLFGL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566667777664
Done!