BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027514
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase
pdb|2C2N|B Chain B, Structure Of Human Mitochondrial Malonyltransferase
Length = 339
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 113/202 (55%), Gaps = 8/202 (3%)
Query: 6 SLLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIIS 65
S+LLF QG+Q VGMG+ + P ELY A +LG+DLLE+ +GP+E LD T+
Sbjct: 27 SVLLF--PGQGSQVVGMGRGLLNYPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHC 84
Query: 66 QPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLR 125
QPAI+V SLAAVE L +I++ G S+GE+ AL FAGA F +GL VK+R
Sbjct: 85 QPAIFVASLAAVEKLHHLQ--PSVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIR 142
Query: 126 GAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVD----EDNKVQIANYLCPGNYAV 181
AMQEA++A M+S++G K C A + E+ +++NYL P +
Sbjct: 143 AEAMQEASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVI 202
Query: 182 SGGVKGIEAVEAKAKSFKARMT 203
SG + + ++ + F R T
Sbjct: 203 SGHQEALRFLQKNSSKFHFRRT 224
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 115/207 (55%), Gaps = 13/207 (6%)
Query: 10 FYVLSQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 68
F QGAQ VGMGKE + + E++K++++ LG D+ E+C N P+ L+ T +QPA
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEALGIDMEELCFNDPEGLLNKTEFTQPA 65
Query: 69 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 128
I T++A +L A D ++ ++CGLSLGEY+AL +GA +FEDG+KLVK RG
Sbjct: 66 IITTNMA---ILTALD---KLGVKSHISCGLSLGEYSALIHSGAINFEDGVKLVKKRGKF 119
Query: 129 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 188
MQEA G MV+++ + ++V ++ + ++ V+ ANY PG +SG + +
Sbjct: 120 MQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPY----GIVEGANYNSPGQIVISGELVAL 175
Query: 189 EAVEAKAKSFKARMTVISSFICIPIQC 215
E K R I + P C
Sbjct: 176 EKAMEFIKEVGGR--AIKLPVSAPFHC 200
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein
Transacylase At 1.5-Angstroms Resolution. Crystal
Structure Of A Fatty Acid Synthase Component
Length = 309
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 94/181 (51%), Gaps = 10/181 (5%)
Query: 10 FYVLSQGAQAVGM-GKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 68
F QG+Q VGM A S P E + +A+ LG+DL + GP E+L+ T +QPA
Sbjct: 6 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPA 65
Query: 69 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 128
+ S+A + + + G + + G SLGEY+AL AG F D ++LV++RG
Sbjct: 66 LLTASVALYRVWQQQGG-----KAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKF 120
Query: 129 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 188
MQEA GAM +IIGLD + + C+ E E V N+ PG ++G + +
Sbjct: 121 MQEAVPEGTGAMAAIIGLDDASIAKACE----EAAEGQVVSPVNFNSPGQVVIAGHKEAV 176
Query: 189 E 189
E
Sbjct: 177 E 177
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol
pdb|2G2O|A Chain A, Structure Of E.Coli Fabd Complexed With Sulfate
pdb|2G2Y|A Chain A, Structure Of E.Coli Fabd Complexed With Malonate
pdb|2G2Z|A Chain A, Structure Of E.coli Fabd Complexed With Malonyl-coa
Length = 308
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 94/181 (51%), Gaps = 10/181 (5%)
Query: 10 FYVLSQGAQAVGM-GKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 68
F QG+Q VGM A S P E + +A+ LG+DL + GP E+L+ T +QPA
Sbjct: 5 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPA 64
Query: 69 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 128
+ S+A + + + G + + G SLGEY+AL AG F D ++LV++RG
Sbjct: 65 LLTASVALYRVWQQQGG-----KAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKF 119
Query: 129 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 188
MQEA GAM +IIGLD + + C+ E E V N+ PG ++G + +
Sbjct: 120 MQEAVPEGTGAMAAIIGLDDASIAKACE----EAAEGQVVSPVNFNSPGQVVIAGHKEAV 175
Query: 189 E 189
E
Sbjct: 176 E 176
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 106/192 (55%), Gaps = 15/192 (7%)
Query: 3 MARSLLLFYVLSQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDS 61
M ++ LF QGAQ +GMG++ P E +A+ +LG+DL + ++KL+
Sbjct: 1 MTKTAFLF--AGQGAQYLGMGRDFYDQYPIVKETIDRASQVLGYDL-RYLIDTEEDKLNQ 57
Query: 62 TIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKL 121
T +QPAI TS+A LL+ + G Q D+ GLSLGEY+AL +GA FED + L
Sbjct: 58 TRYTQPAILATSVAIYRLLQEK--GYQ----PDMVAGLSLGEYSALVASGALDFEDAVAL 111
Query: 122 VKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAV 181
V RGA M+EAA A G MV+++ + +++ C Q+ E V ANY P +
Sbjct: 112 VAKRGAYMEEAAPADSGKMVAVLNTPVEVIEEAC----QKASELGVVTPANYNTPAQIVI 167
Query: 182 SGGVKGIE-AVE 192
+G V ++ AVE
Sbjct: 168 AGEVVAVDRAVE 179
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 8/198 (4%)
Query: 10 FYVLSQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 68
F QG+Q +GMGK + AA ++++ +D L L +I GP + L T +QPA
Sbjct: 9 FTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTANAQPA 68
Query: 69 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 128
+ S+A + ++ G + V G SLGEY+AL AG FS D +L+++RG A
Sbjct: 69 LMAVSMAVIRVMEQL--GLNVEKKVKFVAGHSLGEYSALCAAGTFSLTDTARLLRIRGNA 126
Query: 129 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 188
MQ A +G+M ++IGLD V+++C+ V E+ QIAN G +SG K +
Sbjct: 127 MQAAVAVGEGSMAALIGLDEKDVEEICEI----VAEEGLCQIANDNGGGQIVISGEAKAV 182
Query: 189 E-AVEAKAKSFKARMTVI 205
E AVE ++ R ++
Sbjct: 183 ETAVEVASQKGAKRAVLL 200
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 98/188 (52%), Gaps = 12/188 (6%)
Query: 15 QGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QGAQ VGM ++ + A E+ A L FD+LE + KL T +QPA+ S
Sbjct: 19 QGAQKVGMAQDLFNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGETENTQPALLTHS 78
Query: 74 LAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAA 133
A + L+ + D T G SLGEY++L A SFED +K+V+ RG M +A
Sbjct: 79 SALLAALKNLNP--------DFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAF 130
Query: 134 DAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEA 193
G+M +++GLD DKV ++C + + +D ++ AN CPG VSG I+ +
Sbjct: 131 PTGVGSMAAVLGLDFDKVDEICKSLSS---DDKIIEPANINCPGQIVVSGHKALIDELVE 187
Query: 194 KAKSFKAR 201
K KS A+
Sbjct: 188 KGKSLGAK 195
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd)
Complexed With Glycerol
pdb|3R97|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Fabd), Xoo0880, From Xanthomonas Oryzae
Pv. Oryzae Kacc10331
Length = 314
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 3 MARSLLLFYVLSQGAQAVGMGKEAQSV-PAAAELYKKANDILGFDLLEICTNGPKEKLDS 61
M S L F QG+Q++GM E + P E + +A++ G DL + GP+E L+
Sbjct: 1 MTESTLAFVFPGQGSQSLGMLAELSELHPQIRETFAEASEGAGVDLWALSQGGPEEMLNR 60
Query: 62 TIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKL 121
T +QPA+ +A L A+ G + + G SLGEYTAL AG S DG L
Sbjct: 61 TEYTQPALLAAGVAVWRLWTAQRGQRPAL-----LAGHSLGEYTALVAAGVLSLHDGAHL 115
Query: 122 VKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLC-DAANQEVDEDNKVQIANYLCPGNYA 180
V+LRG MQ AA A GAM +++G + V ++C +AA +V V AN+ PG
Sbjct: 116 VRLRGQFMQAAAPAGVGAMAAVLGAEDAVVLEVCAEAAGSQV-----VVPANFNSPGQIV 170
Query: 181 VSG 183
+ G
Sbjct: 171 IGG 173
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S-
Malonyltransferase From Burkholderia Pseudomallei 1710b
Length = 318
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 9/180 (5%)
Query: 10 FYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAI 69
F QG+Q+VGM V E +A+D LG D+ ++ +GP ++L+ T +QP +
Sbjct: 13 FVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQDIGKLIADGPADELNLTTNTQPVM 72
Query: 70 YVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 129
+ A + G Q + G SLGEYTAL AGA +F D L LV+ R AM
Sbjct: 73 LTAAYACYRAWQQAGGAQP-----SIVAGHSLGEYTALVAAGAIAFRDALPLVRFRAQAM 127
Query: 130 QEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIE 189
Q A G M +I+GLD D V+ +C E V+ N+ P ++G GIE
Sbjct: 128 QTAVPVGVGGMAAILGLDDDTVRAVC----AEASATGVVEAVNFNAPAQVVIAGTKAGIE 183
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium.
pdb|3H0P|B Chain B, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium
Length = 312
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 10/187 (5%)
Query: 4 ARSLLLFYVLSQGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDST 62
A + F QG+Q+VG + + A + P E + +A+ LG+DL + GP E+L+ T
Sbjct: 3 AXTQFAFVFPGQGSQSVGXLAEXAANYPIVEETFAEASAALGYDLWALTQQGPAEELNKT 62
Query: 63 IISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLV 122
+QPA+ S+A + + + G + + G SLGEY+AL AG +F D ++LV
Sbjct: 63 WQTQPALLTASVALWRVWQQQGGKXPALXA-----GHSLGEYSALVCAGVINFADAVRLV 117
Query: 123 KLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVS 182
+ RG QEA G +IIGLD + + C+ E E V N+ PG ++
Sbjct: 118 EXRGKFXQEAVPEGTGGXSAIIGLDDASIAKACE----ESAEGQVVSPVNFNSPGQVVIA 173
Query: 183 GGVKGIE 189
G + +E
Sbjct: 174 GHKEAVE 180
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 92/170 (54%), Gaps = 18/170 (10%)
Query: 15 QGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QG+QA GMG+ + PA L +A+ +LG+ + +C + P ++L T +QPA+YV +
Sbjct: 9 QGSQAKGMGRALFDAFPA---LTARADGVLGYSIRALCQDDPDQRLSQTQFTQPALYVVN 65
Query: 74 LAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAA 133
A+ L+ R+ D G SLGE++AL AG F FE GL LVK RG M
Sbjct: 66 --ALSYLKRREEEA----PPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGELM---G 116
Query: 134 DAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSG 183
DA G M ++IGLD ++V++L D + V IAN P +SG
Sbjct: 117 DARGGGMAAVIGLDEERVRELLDQ-----NGATAVDIANLNSPSQVVISG 161
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 92/170 (54%), Gaps = 18/170 (10%)
Query: 15 QGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QG+QA GMG+ + PA L +A+ +LG+ + +C + P ++L T +QPA+YV +
Sbjct: 9 QGSQAKGMGRALFDAFPA---LTARADGVLGYSIRALCQDDPDQRLSQTQFTQPALYVVN 65
Query: 74 LAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAA 133
A+ L+ R+ D G SLGE++AL AG F FE GL LVK RG M
Sbjct: 66 --ALSYLKRREEEA----PPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGELM---G 116
Query: 134 DAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSG 183
DA G M ++IGLD ++V++L D + V IAN P +SG
Sbjct: 117 DARGGGMAAVIGLDEERVRELLDQ-----NGATAVDIANLNSPSQVVISG 161
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 15/209 (7%)
Query: 10 FYVLSQGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 68
F QG+Q +G + + P E +++A+ L +DL + +GP+E+LD T +QPA
Sbjct: 10 FVFPGQGSQHLGXLAELGLQQPIVLETFQQASSALAYDLWALVQHGPQERLDQTQFTQPA 69
Query: 69 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 128
+ +A A G + V G SLGEY AL AGA FE+ +KLV+ RG
Sbjct: 70 LLTADVAIFRCWEALGGPKP-----QVXAGHSLGEYAALVCAGALKFEEAVKLVEKRGQY 124
Query: 129 MQEAADAAKGAMVSIIGLDSDKVQQLCD-AANQEVDEDNKVQIANYLCPGNYAVSGGVKG 187
QEA +GA +IIGL+ +++ +C+ AA +V VQ AN +SG +
Sbjct: 125 XQEAVPVGEGAXGAIIGLNEAEIESICENAALGQV-----VQPANLNSTDQTVISGHSEA 179
Query: 188 IEAVEAKAKSFKARMTVISSFICIPIQCH 216
++ AK+ A+ I+ I + + H
Sbjct: 180 VDRALNXAKTEGAK---IAKRIPVSVPSH 205
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 12/177 (6%)
Query: 15 QGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QG+QAVG + A+ + + +A+++LG+DL + +GP E L+ T +QPA+ S
Sbjct: 16 QGSQAVGXLADLAEQYAVVKQTFAEASEVLGYDLWALVQDGPVEDLNQTFRTQPALLAAS 75
Query: 74 LAAVELLRARDGGQQI-IDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEA 132
+A + QQ+ ++ V G SLGEY+AL AG F+ +KLV+LRG Q+A
Sbjct: 76 VAIWRVW------QQLGLEQPAVLAGHSLGEYSALVCAGVIDFKQAIKLVELRGQLXQQA 129
Query: 133 ADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIE 189
A GA +IIGL+ + + + C A Q V N+ PG ++G +E
Sbjct: 130 VPAGTGAXYAIIGLEDEAIAKACADAAQ----GEVVSPVNFNSPGQVVIAGQKDAVE 182
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 99/201 (49%), Gaps = 15/201 (7%)
Query: 7 LLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 66
L F QG+QA GMG A+L +A+ +LG+ + +C + P+++L T +Q
Sbjct: 6 LNTFMFPGQGSQAKGMG--GALFDRFADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQ 63
Query: 67 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 126
PA+YV + A + D G+ + D G SLGE+ AL AG F FE GLKLV R
Sbjct: 64 PALYVVN-ALTYYAKCEDSGE----TPDFLAGHSLGEFNALLAAGCFDFETGLKLVARRA 118
Query: 127 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 186
M +A D GAM +I+ +++++ D + VD IAN P +SG
Sbjct: 119 ELMSQARD---GAMAAIVNASREQIERTLD-EHGLVD----TAIANDNTPSQLVISGPAH 170
Query: 187 GIEAVEAKAKSFKARMTVISS 207
I EA + + R +++
Sbjct: 171 EIARAEALFQHDRVRYLRLNT 191
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 16/194 (8%)
Query: 15 QGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QG+ VGMG+ ++ PAA E+ +A L LL++ GP+E L T QPA+
Sbjct: 9 QGSHRVGMGRALYEASPAAKEVLDRAEAALP-GLLKLMWEGPEEALTLTENQQPALLAAG 67
Query: 74 LAAVE-LLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEA 132
AA L A GG+ + G SLGE+TA AG ED L+LV+LRG MQEA
Sbjct: 68 YAAYRAFLEA--GGK----PPALAAGHSLGEWTAHVAAGTLELEDALRLVRLRGRYMQEA 121
Query: 133 ADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVE 192
+GAM +++ L +++Q+ + V+IAN P +SG + +E
Sbjct: 122 VPVGEGAMAAVLKLPLEEIQKALEGL-------EGVEIANLNAPEQTVISGRRQAVEEAA 174
Query: 193 AKAKSFKARMTVIS 206
+ K +AR+ +
Sbjct: 175 ERLKERRARVVFLP 188
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 15 QGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTS 73
QG+Q +GMGK + A EL+++A++ L D+ + E L + +QPAIY+ S
Sbjct: 22 QGSQCIGMGKSFYEGHTLAKELFERASNALKVDMKKTLFE-ENELLKESAYTQPAIYLVS 80
Query: 74 LAAVELLRAR-DGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEA 132
A +LL + +GG + + ++ G SLGE +A++ +GA FE LKL RG MQEA
Sbjct: 81 YIAYQLLNKQANGGLKPVFAL----GHSLGEVSAVSLSGALDFEKALKLTHQRGKMMQEA 136
Query: 133 ADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK-GIEAV 191
+M+ ++G+ + + LC V AN+ G V GVK ++A+
Sbjct: 137 CANKDASMMVVLGVSEESLLSLCQRTKN-------VWCANF-NGGMQVVLAGVKDDLKAL 188
Query: 192 EAKAKSFKARMTVISSFICIPIQCH 216
E K A+ V F+ + + H
Sbjct: 189 EPTLKEMGAKRVV---FLEMSVASH 210
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 7 LLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 66
+L+ QGAQ G + ++P AA+ +D +G DL T +++ T ++Q
Sbjct: 2 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 61
Query: 67 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 126
P L A +L A G G S+GE TA FAG L LV+ RG
Sbjct: 62 PL-----LVAAGILSAAALGTGFTPGA--VAGHSVGEITAAVFAGVLDDTAALSLVRRRG 114
Query: 127 AAMQEAADAAKGAMVSIIGLDSD 149
AM EAA + M +++G D +
Sbjct: 115 LAMAEAAAVTETGMSALLGGDPE 137
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 7 LLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 66
+L+ QGAQ G + ++P AA+ +D +G DL T +++ T ++Q
Sbjct: 1 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 60
Query: 67 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 126
P L A +L A G G S+GE TA FAG L LV+ RG
Sbjct: 61 PL-----LVAAGILSAAALGTGFTPGA--VAGHSVGEITAAVFAGVLDDTAALSLVRRRG 113
Query: 127 AAMQEAADAAKGAMVSIIGLDSD 149
AM EAA + M +++G D +
Sbjct: 114 LAMAEAAAVTETGMSALLGGDPE 136
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 13/151 (8%)
Query: 7 LLLFYVLSQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 66
+L+ QGAQ G + ++P AA+ +D +G DL T +++ T ++Q
Sbjct: 2 MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 61
Query: 67 PAIYVTSLAAVELLRARDGGQQ--IIDSVD------VTCGLSLGEYTALAFAGAFSFEDG 118
P L A +L A G Q + D+ G S+GE TA FAG
Sbjct: 62 PL-----LVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAA 116
Query: 119 LKLVKLRGAAMQEAADAAKGAMVSIIGLDSD 149
L LV+ RG AM EAA + M +++G D +
Sbjct: 117 LSLVRRRGLAMAEAAAVTETGMSALLGGDPE 147
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 55.8 bits (133), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 31/225 (13%)
Query: 15 QGAQAVGMGKEAQSVPAAA-ELYKKAN----DILGFDLLEICTNGPKEKLDSTI------ 63
QG Q GMG E ++ AA +++ A+ + LGF +L + + P + S +
Sbjct: 1355 QGIQHKGMGMEVRARSKAARKVWDSADKFTRETLGFSVLHVVRDNPTSLIASGVHYHHPD 1414
Query: 64 ----ISQ-PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALA-FAGAFSFED 117
++Q + + ++AA ++ R+ G + ++ CG S+GEYTALA +G + E
Sbjct: 1415 GVLFLTQFTQVAMATVAAAQVAEMREQGAFVEGAI--ACGHSVGEYTALACVSGVYELEA 1472
Query: 118 GLKLVKLRGAAMQEAADAAK---------GAMVSIIGLDSDKVQQLCDAANQEVDEDNKV 168
L++V RG+ M + + S I LD V+ ++ E +
Sbjct: 1473 LLEVVFHRGSKMHDIVPRDELGRSNYRLAAIRPSQIDLDDADVKDFVAEISERTGE--FL 1530
Query: 169 QIANYLCPGN-YAVSGGVKGIEAVEAKAKSFKARMTVISSFICIP 212
+I N+ G+ YA++G V G+EA+E + + + SFI +P
Sbjct: 1531 EIVNFNLRGSQYAIAGTVAGLEALEEEIERRRQITGGKRSFILVP 1575
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 55 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 114
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 138 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 190
Query: 115 FEDGLKLVKLRGAAMQEAADAAKGAMVSI 143
+D L L + RG AM A +A G M+S+
Sbjct: 191 ADDTLALARARGEAMSAATEAPSG-MLSL 218
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 55 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 114
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 141 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 193
Query: 115 FEDGLKLVKLRGAAMQEAADAAKGAMVSI 143
+D L L + RG AM A +A G M+S+
Sbjct: 194 ADDTLALARARGEAMSAATEAPSG-MLSL 221
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 55 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 114
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 141 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 193
Query: 115 FEDGLKLVKLRGAAMQEAADAAKGAMVSI 143
+D L L + RG AM A +A G M+S+
Sbjct: 194 ADDTLALARARGEAMSVATEAPSG-MLSL 221
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 15 QGAQAVGMGKEAQSVPAAAE---LYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYV 71
QG+Q GM +P AA+ + KA D+ DL + T E++ T ++QP I
Sbjct: 10 QGSQTEGMLSPWLQLPGAADQIAAWSKAADL---DLARLGTTASTEEITDTAVAQPLIVA 66
Query: 72 TSLAAVELLRAR--DGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 129
+L A + L R G+ +I G S+GE A A AG + +D + L RGA M
Sbjct: 67 ATLLAHQELARRCVLAGKDVI-----VAGHSVGEIAAYAIAGVIAADDAVALAATRGAEM 121
Query: 130 QEAADAAKGAMVSIIGLDSDKV 151
+A M +++G D +V
Sbjct: 122 AKACATEPTGMSAVLGGDETEV 143
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 15 QGAQAVGMGKEAQSVPAAAE---LYKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYV 71
QG+Q GM +P AA+ + KA D+ DL + T E++ T ++QP I
Sbjct: 29 QGSQTEGMLSPWLQLPGAADQIAAWSKAADL---DLARLGTTASTEEITDTAVAQPLIVA 85
Query: 72 TSLAAVELLRAR--DGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 129
+L A + L R G+ +I G S+GE A A AG + +D + L RGA M
Sbjct: 86 ATLLAHQELARRCVLAGKDVI-----VAGHSVGEIAAYAIAGVIAADDAVALAATRGAEM 140
Query: 130 QEAADAAKGAMVSIIGLDSDKV 151
+A M +++G D +V
Sbjct: 141 AKACATEPTGMSAVLGGDETEV 162
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 40.8 bits (94), Expect = 6e-04, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 69/182 (37%), Gaps = 63/182 (34%)
Query: 10 FYVLSQGAQAVGMGKEA-QSVPAAAELYKKAN----DILGFDLLEICTNGP--------- 55
F QG+Q GMG + ++ AA +++ +A+ D GF +L+I N P
Sbjct: 1664 FVFTGQGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1723
Query: 56 --------------------------------------------KEKLDSTIISQPAIYV 71
K L +T +QPA+ +
Sbjct: 1724 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1783
Query: 72 TSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALA-FAGAFSFEDGLKLVKLRGAAMQ 130
AA E L+++ +I + G SLGEY ALA A S E +++V RG MQ
Sbjct: 1784 MEKAAFEDLKSKG----LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1839
Query: 131 EA 132
A
Sbjct: 1840 VA 1841
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 8 LLFYVLSQGAQAVGMGKE--------AQSVPAAAELYKKANDILGFDLLEICTNGPKEKL 59
++F QG+Q GMG E A + A E D D+L P L
Sbjct: 534 VVFLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAPG--L 591
Query: 60 DSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGL 119
D + QP ++ ++ EL R+ ++ V G S GE A AGA + ED
Sbjct: 592 DRVDVVQPVLFAVMVSLAELWRSYG-----VEPAAVV-GHSQGEIAAAHVAGALTLEDAA 645
Query: 120 KLVKLRGAAMQEAADAAKGAMVSI 143
KLV R M+ + A V++
Sbjct: 646 KLVVGRSRLMRSLSGEGGMAAVAL 669
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 12/158 (7%)
Query: 40 NDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGL 99
D LG+ +LE+ + ++ T +Q I+ +A ELLR + G
Sbjct: 178 QDELGYSVLELILDDAQDYGIET--TQVTIFAIQIALGELLRHHGAKPAAV------IGQ 229
Query: 100 SLGEYTALAFAGAFSFEDGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAAN 159
SLGE + FAG S D + + R M E G + ++ L V+ D
Sbjct: 230 SLGEAASAYFAGGLSLRDATRAICSRSHLMGEGEAMLFGEYIRLMAL----VEYSADEIR 285
Query: 160 QEVDEDNKVQIANYLCPGNYAVSGGVKGIEAVEAKAKS 197
+ + +++ Y P + G + ++A+ A+A++
Sbjct: 286 EVFSDFPDLEVCVYAAPTQTVIGGPPEQVDAILARAEA 323
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 59 LDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALA-FAGAFSFED 117
L +T +QPA+ + AA E L+++ +I + G SLGEY ALA A S E
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKG----LIPADATFAGHSLGEYAALASLADVMSIES 1781
Query: 118 GLKLVKLRGAAMQEA 132
+++V RG MQ A
Sbjct: 1782 LVEVVFYRGMTMQVA 1796
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 11 YVLS-QGAQAVGMGKEAQSV-PAAAELYKKAN----DILGFDLLEICTNGPKE 57
YV + QG+Q GMG + + P A E++ +A+ + GF +++I N PKE
Sbjct: 1674 YVFTGQGSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVKNNPKE 1726
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 124 LRGAAMQEAADAAKGA---MVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYA 180
L + +Q++ + +G M+SI L VQ+ DA NQ + ED + I+ N+
Sbjct: 313 LAPSTLQDSVENGEGTPTPMLSIRDLTRSAVQEHIDATNQHLPEDRHIGISLVNSARNFV 372
Query: 181 VSGGVKGIEAVEAKAKSFKA 200
V+G + + + + KA
Sbjct: 373 VTGPPISLYGLNLRLRKVKA 392
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 32.3 bits (72), Expect = 0.19, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 59 LDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDG 118
LD + QPA++ ++ L R+ ++ V G S GE A AGA + ED
Sbjct: 607 LDRVDVVQPALFAVXVSLAALWRSHG-----VEPAAVV-GHSQGEIAAAHVAGALTLEDA 660
Query: 119 LKLVKLRGAAMQ 130
KLV +R ++
Sbjct: 661 AKLVAVRSRVLR 672
>pdb|2BJN|A Chain A, X-Ray Structure Of Human Tpc6
pdb|2BJN|B Chain B, X-Ray Structure Of Human Tpc6
Length = 160
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 36 YKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVD- 94
+K DI+ F + T K+++D+ + IYV LL G+Q ++
Sbjct: 60 FKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASK 119
Query: 95 ---VTCGLSLG 102
TCGL G
Sbjct: 120 YLAFTCGLIRG 130
>pdb|3KXC|C Chain C, Mutant Transport Protein
Length = 158
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 36 YKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVD- 94
+K DI+ F + T K+++D+ + IYV LL G+Q ++
Sbjct: 58 FKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASK 117
Query: 95 ---VTCGLSLG 102
TCGL G
Sbjct: 118 YLAFTCGLIRG 128
>pdb|2CFH|C Chain C, Structure Of The Bet3-Tpc6b Core Of Trapp
pdb|2CFH|D Chain D, Structure Of The Bet3-Tpc6b Core Of Trapp
Length = 158
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 36 YKKANDILGFDLLEICTNGPKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVD- 94
+K DI+ F + T K+++D+ + IYV LL G+Q ++
Sbjct: 58 FKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASK 117
Query: 95 ---VTCGLSLG 102
TCGL G
Sbjct: 118 YLAFTCGLIRG 128
>pdb|2Z1N|A Chain A, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1
pdb|2Z1N|B Chain B, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1
Length = 260
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 34 ELYKKANDILGFDLLEICTNGPK---------EKLDST--IISQPAIYVTSLAAVELLRA 82
L++KA D+ G D+L T GP+ E D + ++++ A++V AA +++
Sbjct: 75 RLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK 134
Query: 83 RDGGQQIIDSV 93
G I SV
Sbjct: 135 GWGRMVYIGSV 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,638,275
Number of Sequences: 62578
Number of extensions: 209886
Number of successful extensions: 607
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 44
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)