Your job contains 1 sequence.
>027515
MEQHDEQEHDVYGGEIPDEMDADIDVDEHEHEHDHDHDHEHEHDADNENEEDPNANSKDL
EDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYA
CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLK
VSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPFVPYGYG
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027515
(222 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2171780 - symbol:AT5G65260 species:3702 "Arabi... 653 2.0e-69 2
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 639 1.6e-67 2
UNIPROTKB|G4MUH3 - symbol:MGG_07252 "Polyadenylate-bindin... 414 9.9e-39 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 392 2.1e-36 1
UNIPROTKB|Q28ZX3 - symbol:Pabp2 "Polyadenylate-binding pr... 366 5.7e-36 2
ASPGD|ASPL0000053752 - symbol:AN1340 species:162425 "Emer... 387 7.2e-36 1
CGD|CAL0002199 - symbol:orf19.7097 species:5476 "Candida ... 369 5.8e-34 1
UNIPROTKB|Q5AFH1 - symbol:SGN12 "Putative uncharacterized... 369 5.8e-34 1
FB|FBgn0005648 - symbol:Pabp2 "Pabp2" species:7227 "Droso... 366 1.2e-33 1
ZFIN|ZDB-GENE-040426-2401 - symbol:pabpn1 "poly(A) bindin... 360 5.2e-33 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 349 7.7e-32 1
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 348 9.8e-32 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 347 1.3e-31 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 347 1.3e-31 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 346 1.6e-31 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 346 1.6e-31 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 346 1.6e-31 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 346 1.6e-31 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 346 1.6e-31 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 344 2.6e-31 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 342 4.2e-31 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 332 4.9e-30 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 319 1.2e-28 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 319 1.2e-28 1
UNIPROTKB|F1NWW9 - symbol:PABPN1 "Uncharacterized protein... 317 1.9e-28 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 317 1.9e-28 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 310 1.0e-27 1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ... 286 3.6e-25 1
WB|WBGene00017140 - symbol:EEED8.12 species:6239 "Caenorh... 283 7.6e-25 1
UNIPROTKB|A6NDY0 - symbol:PABPN1L "Embryonic polyadenylat... 282 9.7e-25 1
WB|WBGene00017135 - symbol:EEED8.4 species:6239 "Caenorha... 281 1.2e-24 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 273 8.7e-24 1
UNIPROTKB|I3LCY5 - symbol:LOC100525398 "Uncharacterized p... 272 1.1e-23 1
UNIPROTKB|I3LCE0 - symbol:LOC100620185 "Uncharacterized p... 260 2.1e-22 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 258 3.4e-22 1
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 248 3.9e-21 1
RGD|1562761 - symbol:Pabpn1l "poly(A)binding protein nucl... 244 1.0e-20 1
UNIPROTKB|G3V9K1 - symbol:Pabpn1l "Similar to embryonic p... 244 1.0e-20 1
MGI|MGI:2685954 - symbol:Pabpn1l "poly(A)binding protein ... 243 1.3e-20 1
SGD|S000001440 - symbol:SGN1 "Cytoplasmic RNA-binding pro... 238 4.4e-20 1
UNIPROTKB|A2A2V2 - symbol:RBM34 "RNA-binding protein 34" ... 174 1.4e-12 1
UNIPROTKB|P42696 - symbol:RBM34 "RNA-binding protein 34" ... 174 1.6e-12 1
UNIPROTKB|F1RGW8 - symbol:RBM34 "Uncharacterized protein"... 166 1.1e-11 1
UNIPROTKB|E2R3E1 - symbol:RBM34 "Uncharacterized protein"... 166 1.2e-11 1
TAIR|locus:2087685 - symbol:AT3G12640 species:3702 "Arabi... 166 2.3e-11 1
RGD|1310161 - symbol:Rbm34 "RNA binding motif protein 34"... 162 3.1e-11 1
MGI|MGI:1098653 - symbol:Rbm34 "RNA binding motif protein... 159 5.0e-11 1
FB|FBgn0035063 - symbol:Eap "Exu-associated protein" spec... 153 5.7e-11 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 152 5.8e-11 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 152 5.8e-11 1
UNIPROTKB|F1NIM5 - symbol:RBM34 "Uncharacterized protein"... 156 1.2e-10 1
UNIPROTKB|H0YJH9 - symbol:PABPN1 "Polyadenylate-binding p... 148 1.5e-10 1
MGI|MGI:2447622 - symbol:Rbm11 "RNA binding motif protein... 146 3.0e-10 1
UNIPROTKB|Q804A9 - symbol:DAZL "Deleted in azoospermia-li... 149 3.1e-10 1
RGD|1305195 - symbol:Rbm11 "RNA binding motif protein 11"... 145 3.9e-10 1
FB|FBgn0032620 - symbol:CG12288 species:7227 "Drosophila ... 152 3.9e-10 1
UNIPROTKB|F1P368 - symbol:DAZL "Deleted in azoospermia-li... 148 4.0e-10 1
SGD|S000005401 - symbol:NOP12 "Protein involved in pre-rR... 152 4.4e-10 1
TAIR|locus:2061077 - symbol:AT2G24350 species:3702 "Arabi... 153 4.5e-10 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 142 6.6e-10 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 142 6.6e-10 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 140 1.1e-09 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 140 1.1e-09 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 133 1.2e-09 2
ZFIN|ZDB-GENE-040718-77 - symbol:rbm34 "RNA binding motif... 147 1.2e-09 1
ASPGD|ASPL0000005213 - symbol:AN6074 species:162425 "Emer... 141 2.6e-09 1
RGD|619928 - symbol:Pabpn1 "poly(A) binding protein, nucl... 133 5.9e-09 1
ASPGD|ASPL0000069068 - symbol:AN7350 species:162425 "Emer... 135 7.9e-09 2
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 131 9.7e-09 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 131 9.7e-09 1
POMBASE|SPAC16E8.06c - symbol:nop12 "RNA-binding protein ... 139 1.0e-08 1
FB|FBgn0022943 - symbol:Cbp20 "cap binding protein 20" sp... 130 1.2e-08 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 130 1.2e-08 1
POMBASE|SPAC3G6.04 - symbol:rnp24 "RNA-binding protein Rn... 134 1.5e-08 2
DICTYBASE|DDB_G0275459 - symbol:DDB_G0275459 "RNA-binding... 130 2.2e-08 2
UNIPROTKB|B5G279 - symbol:NCBP2 "Nuclear cap-binding prot... 127 2.6e-08 1
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 126 3.3e-08 1
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein... 125 4.2e-08 1
UNIPROTKB|I3L8K8 - symbol:I3L8K8 "Uncharacterized protein... 125 4.2e-08 1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 136 5.3e-08 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 124 5.3e-08 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 136 6.2e-08 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 122 8.7e-08 1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 134 1.4e-07 1
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s... 120 1.4e-07 1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s... 120 1.4e-07 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 119 1.8e-07 1
ZFIN|ZDB-GENE-030131-6724 - symbol:zgc:77304 "zgc:77304" ... 132 1.8e-07 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 118 2.3e-07 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 118 2.3e-07 1
RGD|1311646 - symbol:Sart3 "squamous cell carcinoma antig... 129 2.6e-07 2
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 117 2.9e-07 1
ZFIN|ZDB-GENE-020419-31 - symbol:ncbp2 "nuclear cap bindi... 117 2.9e-07 1
POMBASE|SPBC13A2.01c - symbol:SPBC13A2.01c "nuclear cap-b... 125 3.0e-07 1
UNIPROTKB|P57052 - symbol:RBM11 "Splicing regulator RBM11... 131 3.6e-07 1
TAIR|locus:2099931 - symbol:SCL30 "SC35-like splicing fac... 130 4.1e-07 1
UNIPROTKB|H0YHU8 - symbol:SART3 "Squamous cell carcinoma ... 115 4.9e-07 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 115 4.9e-07 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 115 4.9e-07 1
UNIPROTKB|Q5ZKR5 - symbol:NCBP2 "Nuclear cap-binding prot... 120 5.7e-07 1
WARNING: Descriptions of 346 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 653 (234.9 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 126/166 (75%), Positives = 147/166 (88%)
Query: 58 KDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNV 117
K+L++MKKRLKE+E+EA ALREMQAKVEKEMGA QD +S +A QA KEEVD+RS++VGNV
Sbjct: 41 KELDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNV 99
Query: 118 DYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGR 177
DYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEFVE++AVQ AL LNE+ELHGR
Sbjct: 100 DYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGR 159
Query: 178 QLKVSAKRTNIPGMKQFRGRRPNTF-GFRGRRPFIPGVPFVPYGYG 222
QLKV KRTN+PG+KQFRGRR N + G+R RRPF+ + PYGYG
Sbjct: 160 QLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYG 205
Score = 69 (29.3 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 5 DEQEHDVYGGEIPD 18
+E+EH+VYGGEIPD
Sbjct: 2 EEEEHEVYGGEIPD 15
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 639 (230.0 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 123/165 (74%), Positives = 141/165 (85%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVD 118
+L +MK+RLKE+EEEA ALREMQAKVEKEMGA QD +S +A Q KEEVD+RS+YVGNVD
Sbjct: 38 ELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVD 97
Query: 119 YACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQ 178
YACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEFVE++AVQ AL LNE+ELHGRQ
Sbjct: 98 YACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQ 157
Query: 179 LKVSAKRTNIPGMKQFR-GRRPNTFGFRGRRPFIPGVPFVPYGYG 222
LKVS KRTN+PGMKQ+ GR + G+R RRPF+P + PYGYG
Sbjct: 158 LKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYG 202
Score = 65 (27.9 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 10/14 (71%), Positives = 14/14 (100%)
Query: 5 DEQEHDVYGGEIPD 18
+E+EH+VYGGEIP+
Sbjct: 2 EEEEHEVYGGEIPE 15
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 88/160 (55%), Positives = 110/160 (68%)
Query: 54 NANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIY 113
+ + +++ MKKR+ E+EEEA LREMQA + DS S + +++VDSRSI+
Sbjct: 25 DGDDEEISAMKKRVAEMEEEAAKLREMQASL--------DSQSQELSTESRDDVDSRSIF 76
Query: 114 VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNET 172
VGNVDY+ +PEE+Q HFQSCG++NRVTIL DKF GQPKGFAYVEF E V AL+LNE+
Sbjct: 77 VGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVEFTEPSLVAQALVLNES 136
Query: 173 ELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIP 212
GR +KVS KRTN PGM + RGR GF GR F P
Sbjct: 137 VFKGRNIKVSPKRTNYPGMSRGRGRGRGRGGF-GRGGFPP 175
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 87/167 (52%), Positives = 111/167 (66%)
Query: 54 NANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIY 113
+ K+L +MK+R+ E+E EA LR MQ +++ E T A + +KE +D++S+Y
Sbjct: 8 DTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALRNDKESIDAQSVY 58
Query: 114 VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNET 172
VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E V NALLLN +
Sbjct: 59 VGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGS 118
Query: 173 ELHGRQLKVSAKRTNIPGMKQFRGRRPNTF------GFRGR-RPFIP 212
LH R LKV+ KRTN+PGM + RGR G+RGR R F P
Sbjct: 119 MLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAP 165
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 366 (133.9 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
Identities = 73/153 (47%), Positives = 105/153 (68%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEM--GAVQDSSSTSATQAEKEEVDSRSIYVGN 116
+LE +K R+KE+EEEA +++MQ++V+K+M G+ ++ + EK+E+D+RS+YVGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGN 102
Query: 117 VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELH 175
VDY + EE++ HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NET
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 176 GRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 208
GRQ+KV +KRTN PG+ +F RG R
Sbjct: 163 GRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195
Score = 38 (18.4 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 194 FRGRRPNTFGFRGR 207
FRG R G+RGR
Sbjct: 205 FRGARRAIRGYRGR 218
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 82/157 (52%), Positives = 112/157 (71%)
Query: 56 NSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVG 115
+ +++E MK+R+ E+E EA LREMQA ++++ ++++ +KE++D+RSI+VG
Sbjct: 23 DEEEIEAMKRRVAEMESEAAKLREMQATLDQQSESLKE---------DKEDIDARSIFVG 73
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY +PEE+Q HFQSCG++NRVTIL DKF GQPKG+AYVEF E V AL+LNE+
Sbjct: 74 NVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALVLNESVF 133
Query: 175 HGRQLKVSAKRTNIPGMK-QFRGR-RPNTFGFRGRRP 209
GR LKV KRTN+PGM + RGR R +G RG P
Sbjct: 134 RGRNLKVVPKRTNLPGMSSRGRGRGRGRGYG-RGGFP 169
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 82/157 (52%), Positives = 107/157 (68%)
Query: 57 SKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGN 116
S++ E++K +L+E+E+E LRE+ +++ E + T T EK + D+RSIY+GN
Sbjct: 14 SENSEEVKNKLEEMEQETAKLRELHSQLSSE----STNGVTHPTDEEKRDTDARSIYIGN 69
Query: 117 VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALL-LNETEL 174
VDY TP E+QQHF S G VNRVTILT+KF GQPKGFAY+EF + DAV A+ L+ +
Sbjct: 70 VDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTF 129
Query: 175 HGRQLKVSAKRTNIPGM---KQFRGR-RPNTFGFRGR 207
RQLKVSAKRTNIPG+ + F GR R N G RGR
Sbjct: 130 RERQLKVSAKRTNIPGISVKRGFPGRGRGNFRGGRGR 166
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 82/157 (52%), Positives = 107/157 (68%)
Query: 57 SKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGN 116
S++ E++K +L+E+E+E LRE+ +++ E + T T EK + D+RSIY+GN
Sbjct: 14 SENSEEVKNKLEEMEQETAKLRELHSQLSSE----STNGVTHPTDEEKRDTDARSIYIGN 69
Query: 117 VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALL-LNETEL 174
VDY TP E+QQHF S G VNRVTILT+KF GQPKGFAY+EF + DAV A+ L+ +
Sbjct: 70 VDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTF 129
Query: 175 HGRQLKVSAKRTNIPGM---KQFRGR-RPNTFGFRGR 207
RQLKVSAKRTNIPG+ + F GR R N G RGR
Sbjct: 130 RERQLKVSAKRTNIPGISVKRGFPGRGRGNFRGGRGR 166
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 73/153 (47%), Positives = 105/153 (68%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEM--GAVQDSSSTSATQAEKEEVDSRSIYVGN 116
+LE +K R+KE+EEEA +++MQ++V+K+M G+ ++ + EK+E+D+RS+YVGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGN 102
Query: 117 VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELH 175
VDY + EE++ HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NET
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 176 GRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 208
GRQ+KV +KRTN PG+ +F RG R
Sbjct: 163 GRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 77/151 (50%), Positives = 102/151 (67%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMG-AVQDSSSTSATQAEKEEVDSRSIYVGNV 117
+LE +K R++E+EEEA L+E+Q +VEK+M + + + EK E D RSIYVGNV
Sbjct: 46 ELEAIKARVREMEEEAEKLKELQNEVEKQMNLSPPPAGPVIMSIEEKIEADGRSIYVGNV 105
Query: 118 DYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHG 176
DY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ A+ L+E+ G
Sbjct: 106 DYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRG 165
Query: 177 RQLKVSAKRTNIPGMKQF-RGRRPNTFGFRG 206
RQ+KV AKRTN PG+ RG F RG
Sbjct: 166 RQIKVGAKRTNRPGISTTDRGFPRARFRSRG 196
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 80/172 (46%), Positives = 107/172 (62%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +VEK+M + + EK E D+RSIYVG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 168
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLF 228
Query: 175 HGRQLKVSAKRTNIPGM----KQF-RGR-RPNTFGFRGRRPFIPGVPFVPYG 220
GRQ+KV KRTN PG+ + F R R R + R F G P G
Sbjct: 229 RGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRG 280
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 80/172 (46%), Positives = 107/172 (62%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +VEK+M + + EK E D+RSIYVG
Sbjct: 108 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 167
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+
Sbjct: 168 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLF 227
Query: 175 HGRQLKVSAKRTNIPGM----KQF-RGR-RPNTFGFRGRRPFIPGVPFVPYG 220
GRQ+KV KRTN PG+ + F R R R + R F G P G
Sbjct: 228 RGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRG 279
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 71/137 (51%), Positives = 96/137 (70%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +VEK+M + + EK E D+RSIYVG
Sbjct: 114 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVG 173
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+
Sbjct: 174 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 233
Query: 175 HGRQLKVSAKRTNIPGM 191
GRQ+KV KRTN PG+
Sbjct: 234 RGRQIKVIPKRTNRPGI 250
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 71/137 (51%), Positives = 96/137 (70%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +VEK+M + + EK E D+RSIYVG
Sbjct: 114 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVG 173
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+
Sbjct: 174 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 233
Query: 175 HGRQLKVSAKRTNIPGM 191
GRQ+KV KRTN PG+
Sbjct: 234 RGRQIKVIPKRTNRPGI 250
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 71/137 (51%), Positives = 96/137 (70%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +VEK+M + + EK E D+RSIYVG
Sbjct: 87 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 146
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+
Sbjct: 147 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 206
Query: 175 HGRQLKVSAKRTNIPGM 191
GRQ+KV KRTN PG+
Sbjct: 207 RGRQIKVIPKRTNRPGI 223
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 71/137 (51%), Positives = 96/137 (70%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +VEK+M + + EK E D+RSIYVG
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 177
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+
Sbjct: 178 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 237
Query: 175 HGRQLKVSAKRTNIPGM 191
GRQ+KV KRTN PG+
Sbjct: 238 RGRQIKVIPKRTNRPGI 254
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 71/137 (51%), Positives = 96/137 (70%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +VEK+M + + EK E D+RSIYVG
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 177
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+
Sbjct: 178 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 237
Query: 175 HGRQLKVSAKRTNIPGM 191
GRQ+KV KRTN PG+
Sbjct: 238 RGRQIKVIPKRTNRPGI 254
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 71/137 (51%), Positives = 96/137 (70%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +VEK+M + + EK E D+RSIYVG
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 177
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+
Sbjct: 178 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 237
Query: 175 HGRQLKVSAKRTNIPGM 191
GRQ+KV KRTN PG+
Sbjct: 238 RGRQIKVIPKRTNRPGI 254
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 71/137 (51%), Positives = 96/137 (70%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +VEK+M + + EK E D+RSIYVG
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 177
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+
Sbjct: 178 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 237
Query: 175 HGRQLKVSAKRTNIPGM 191
GRQ+KV KRTN PG+
Sbjct: 238 RGRQIKVIPKRTNRPGI 254
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 79/172 (45%), Positives = 107/172 (62%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +VEK+M + + EK E D+RSIYVG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 168
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
NVDY T EE++ HF CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+E+
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLF 228
Query: 175 HGRQLKVSAKRTNIPGM----KQF-RGR-RPNTFGFRGRRPFIPGVPFVPYG 220
GRQ+KV KRTN PG+ + F R R R + R F G P G
Sbjct: 229 RGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRG 280
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 80/168 (47%), Positives = 101/168 (60%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA----TQAEKEEVDSRSIYV 114
DL ++ L EIEEE L+ +Q ++ M S S S+ T EK E D++S+YV
Sbjct: 23 DLSAIEGDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKSVYV 82
Query: 115 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETE 173
GNVDY T EE++QHF CG+V+RVTI D+F G PKGFAYVEF E + +QNAL + ++
Sbjct: 83 GNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDSL 142
Query: 174 LHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPFVPYGY 221
L GRQ+KV KRTN PGM R P FRGR G V Y Y
Sbjct: 143 LRGRQIKVDPKRTNKPGMST-TNRPP----FRGRGGRGRGNVIVKYVY 185
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 72/158 (45%), Positives = 101/158 (63%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEM---GAVQDSSSTSA----TQAEKEEVDSRS 111
+LE+MKKR +E+EEEA L E+Q +E + V + ++EE+DSRS
Sbjct: 43 ELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQEEIDSRS 102
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLN 170
+YVGNVDY T +++ +FQSCGTVNR+TIL+DK G PKG YVEFV +++ NA+ LN
Sbjct: 103 VYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALN 162
Query: 171 ETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 208
++ + RQLK++ KRTN+P + P GFRG R
Sbjct: 163 DSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGR 200
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 66/126 (52%), Positives = 87/126 (69%)
Query: 70 IEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEV 126
+EEEA L+E+Q +VEK+M + + EK E D+RSIYVGNVDY T EE+
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 60
Query: 127 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185
+ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KR
Sbjct: 61 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 120
Query: 186 TNIPGM 191
TN PG+
Sbjct: 121 TNRPGI 126
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 66/126 (52%), Positives = 87/126 (69%)
Query: 70 IEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEV 126
+EEEA L+E+Q +VEK+M + + EK E D+RSIYVGNVDY T EE+
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 60
Query: 127 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185
+ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KR
Sbjct: 61 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 120
Query: 186 TNIPGM 191
TN PG+
Sbjct: 121 TNRPGI 126
>UNIPROTKB|F1NWW9 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 OMA:MAANQEG EMBL:AADN02054103
IPI:IPI00598135 ProteinModelPortal:F1NWW9
Ensembl:ENSGALT00000010095 Uniprot:F1NWW9
Length = 184
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 69/150 (46%), Positives = 94/150 (62%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVD 118
+LE +K R++E+EEE L+E+Q + E + ++ K E D RSIYVGNVD
Sbjct: 1 ELEAIKARVREMEEEDKRLKELQLEAESCLLMGSEAGLFQRMTEGKVEADQRSIYVGNVD 60
Query: 119 YACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGR 177
Y T EE++ HF CG +NRVTIL DKF G PKG+AY+EF + +V+ A+ L+E+ GR
Sbjct: 61 YGGTAEELESHFNICGRINRVTILCDKFSGHPKGYAYIEFEQKSSVKAAVELDESIFRGR 120
Query: 178 QLKVSAKRTNIPGMKQF-RGRRPNTFGFRG 206
+KV KRTN+PG+ RG R F RG
Sbjct: 121 VIKVLPKRTNMPGISSTDRGGRRGHFQARG 150
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 72/173 (41%), Positives = 106/173 (61%)
Query: 58 KDLEDMKKRLKEI---EEEAG-ALREMQAKVEKEM--GAVQDSSSTSATQAEKEEVDSRS 111
+++E+ +RLK + ++ G + R +M GA + + EK+E+D RS
Sbjct: 35 REMEEEAERLKGLSGQDKSIGVSTRPCMQTTHSKMTAGAYTEGPPQPLSAEEKKEIDKRS 94
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLN 170
+YVGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V A+ ++
Sbjct: 95 VYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMD 154
Query: 171 ETELHGRQLKVSAKRTNIPGMKQ-----FRGR-RPNTFGF-RGRRPFIPGVPF 216
ET GR +KV KRTN+PG+ FRGR R N + RG+RP G PF
Sbjct: 155 ETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRP--RGRPF 205
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 73/182 (40%), Positives = 109/182 (59%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAK--------------VEKEM--GAVQDSSSTSATQA 102
+L+ ++ R++E+EEEA L+ + + + +M G + +
Sbjct: 26 ELKAIRMRVREMEEEAERLKGLSGQDKSIGVSPRPCMKLIHSKMTAGEYTEGPPRPLSAE 85
Query: 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEID 161
EK+E+D RS+YVGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E +
Sbjct: 86 EKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERN 145
Query: 162 AVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-----FRGR-RPNTFGF-RGRRPFIPGV 214
+V A+ ++ET GR +KV KRTN+PG+ FRGR R N + RG+RP G
Sbjct: 146 SVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRP--RGR 203
Query: 215 PF 216
PF
Sbjct: 204 PF 205
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 59/127 (46%), Positives = 87/127 (68%)
Query: 84 VEKEMGAVQDSSSTSATQ-AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142
+ +E VQ++ + A++EE+D RS+YVGNVDY TPE++++ F G + RVTIL
Sbjct: 1 MSEEKVRVQETEEERQERLAKQEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTIL 60
Query: 143 TDKF-GQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGRRPN 200
D+F G PKG+AY+EF + ++VQ A+ L+ E GR+L+V+AKRTN+PG ++ RGR
Sbjct: 61 FDRFSGLPKGYAYIEFEQTESVQKAIDELHGKEFRGRELRVTAKRTNLPGFRRGRGRG-- 118
Query: 201 TFGFRGR 207
GFR R
Sbjct: 119 --GFRAR 123
>WB|WBGene00017140 [details] [associations]
symbol:EEED8.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15923 RefSeq:NP_495021.1 ProteinModelPortal:Q09301 SMR:Q09301
IntAct:Q09301 STRING:Q09301 EnsemblMetazoa:EEED8.12 GeneID:173922
KEGG:cel:CELE_EEED8.12 UCSC:EEED8.12 CTD:173922 WormBase:EEED8.12
InParanoid:Q09301 OMA:HESIFRD NextBio:881677 Uniprot:Q09301
Length = 197
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 59/141 (41%), Positives = 92/141 (65%)
Query: 69 EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQ 128
EIE E+ L ++Q K+ K + + ++ T+ E++ +D++S+++GNVD+ T EEV++
Sbjct: 23 EIEAESAILEQIQNKMAKNL---ESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEE 79
Query: 129 HFQSCGTVNRVTILTDKFGQP-KGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTN 187
HF+ CG + R TI DKF + K FAY+EF + +++NAL++N + R + V+AKRTN
Sbjct: 80 HFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTN 139
Query: 188 IPGMKQ-FRGRRPNTFGFRGR 207
IPGM RG TFG RGR
Sbjct: 140 IPGMGHGVRGSSRGTFG-RGR 159
>UNIPROTKB|A6NDY0 [details] [associations]
symbol:PABPN1L "Embryonic polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC092384
eggNOG:COG0724 HOVERGEN:HBG107480 KO:K14396 EMBL:BC130001
EMBL:BC130002 IPI:IPI00375983 IPI:IPI00854628 IPI:IPI00942797
IPI:IPI01021917 RefSeq:NP_001073956.2 UniGene:Hs.730522
ProteinModelPortal:A6NDY0 SMR:A6NDY0 STRING:A6NDY0
PhosphoSite:A6NDY0 PaxDb:A6NDY0 PRIDE:A6NDY0 DNASU:390748
Ensembl:ENST00000378358 Ensembl:ENST00000411789
Ensembl:ENST00000419291 Ensembl:ENST00000547152 GeneID:390748
KEGG:hsa:390748 UCSC:uc002fmi.3 UCSC:uc010vpd.2 UCSC:uc010vpe.2
CTD:390748 GeneCards:GC16M088928 H-InvDB:HIX0059621 HGNC:HGNC:37237
HPA:HPA043415 neXtProt:NX_A6NDY0 HOGENOM:HOG000208465
InParanoid:A6NDY0 OMA:RCGEVHR GenomeRNAi:390748 NextBio:104019
ArrayExpress:A6NDY0 Bgee:A6NDY0 Genevestigator:A6NDY0
Uniprot:A6NDY0
Length = 278
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 73/171 (42%), Positives = 97/171 (56%)
Query: 58 KDLEDMKKRLKEIEEEAGALRE--MQAKVEKEMGAVQD---SSST-----SATQAEKEEV 107
++LE +K ++ +E+ G R +Q + E+E G S T S T EK E
Sbjct: 85 QELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEA 144
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNA 166
D RS+YVGNVDY + EE++ HF CG V+RVTIL DKF G PKG+AY+EF +VQ A
Sbjct: 145 DHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAA 204
Query: 167 LLLNETELHGRQLKVSAKRTNIPGMKQF-RGRRPNTFGFRGRRPFIPGVPF 216
+ L+++ GR +KV KRTN PG+ RG G RG P G PF
Sbjct: 205 VELDQSLFRGRVIKVLPKRTNFPGISSTDRG------GLRGH-PGSRGAPF 248
>WB|WBGene00017135 [details] [associations]
symbol:EEED8.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15924 RefSeq:NP_495022.2 ProteinModelPortal:Q09295 SMR:Q09295
STRING:Q09295 EnsemblMetazoa:EEED8.4 GeneID:173921
KEGG:cel:CELE_EEED8.4 UCSC:EEED8.4 CTD:173921 WormBase:EEED8.4
InParanoid:Q09295 OMA:KSERASP NextBio:881673 Uniprot:Q09295
Length = 191
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 57/141 (40%), Positives = 93/141 (65%)
Query: 69 EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQ 128
EIE E+ L+++Q K+ K + + ++ T+ E++ +D++S+++GNVD+ T EE+++
Sbjct: 17 EIEAESAILQQIQNKMAKHL---ESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEE 73
Query: 129 HFQSCGTVNRVTILTDKFGQP-KGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTN 187
HF+ CG + + TI DKF + K FAY+EF + +++NAL++N + R + V+AKRTN
Sbjct: 74 HFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTN 133
Query: 188 IPGMKQ-FRGRRPNTFGFRGR 207
IPGM RG TFG RGR
Sbjct: 134 IPGMGHGVRGSSRGTFG-RGR 153
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 65/147 (44%), Positives = 88/147 (59%)
Query: 79 EMQAKVEKEMGAVQDSSST-SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVN 137
+MQ +VE++ ++ T E+ + D RSIYVGNVDY T +E++ +F SCG VN
Sbjct: 34 DMQYEVERQFPYSPEAELFFDMTHEERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVN 93
Query: 138 RVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ--- 193
RVTI ++F G PKGFAY+EF + ++V+ A+ L+ET GR +KVS KRTNIPG
Sbjct: 94 RVTIPYNRFTGHPKGFAYIEFSDRESVRTAMALDETLFRGRVIKVSPKRTNIPGFSTTDV 153
Query: 194 -FRGRRPNTFGFRGRR--PFIPGVPFV 217
RG G R R PF G F+
Sbjct: 154 YLRGGWSRGRGVRASRFNPF-RGCRFI 179
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/149 (46%), Positives = 84/149 (56%)
Query: 71 EEEAGALREMQA-KVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQH 129
EE+AGAL Q EKE G D T EK E D RS+YVGNVDY T E++ +
Sbjct: 128 EEDAGALLAGQLLSPEKEAGFPSD------TPTEKVEADHRSVYVGNVDYEGTARELEAY 181
Query: 130 FQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNI 188
F CG ++RVTIL DKF G PKG+AY+EF + Q A+ L+ + GR +KV KRTN
Sbjct: 182 FNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAAVELDNSVFRGRVIKVLPKRTNF 241
Query: 189 PGMKQF-RGRRPNTFGFRGRRPFIPGVPF 216
PG+ RG G RG P G PF
Sbjct: 242 PGISSTDRG------GLRGH-PSARGRPF 263
>UNIPROTKB|I3LCE0 [details] [associations]
symbol:LOC100620185 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:FP102819
Ensembl:ENSSSCT00000030389 OMA:CCGEINR Uniprot:I3LCE0
Length = 295
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 67/149 (44%), Positives = 82/149 (55%)
Query: 71 EEEAGALREMQA-KVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQH 129
EE+AGAL Q EKE G D T EK E D RS+YVGNVDY T E++ +
Sbjct: 128 EEDAGALLAGQLLSPEKEAGFPSD------TPTEKVEADHRSVYVGNVDYEGTARELEAY 181
Query: 130 FQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNI 188
F CG ++RVTIL DKF G PKG+AY+EF + Q + L+ + G +KV KRTN
Sbjct: 182 FNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAPVELDNSVFRGPVIKVLPKRTNF 241
Query: 189 PGMKQF-RGRRPNTFGFRGRRPFIPGVPF 216
PG+ RG G RG P G PF
Sbjct: 242 PGISSTDRG------GLRGH-PSARGRPF 263
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 70/173 (40%), Positives = 97/173 (56%)
Query: 58 KDLEDMKKRLKEIEEEAGALREMQAKV---EKEMGAV---QDSSSTSATQAEKEEVDSRS 111
++LE +K +L +E+ G + E+ GA+ Q S + + EK E D RS
Sbjct: 101 QELEAIKLKLWAMEQAQGPEPPRVQNLDEGEEAAGALLARQLLSPETDSPLEKAEADHRS 160
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLN 170
IYVGNVDY T +E++ +F CG ++RVTIL DKF G PKG+AY+EF + Q A+ L+
Sbjct: 161 IYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAAVELD 220
Query: 171 ETELHGRQLKVSAKRTNIPGMKQF-RGRRPNTFGFRGRRPFIPG--VPFVPYG 220
++ GR +KV KRTN+PG+ RG G RG PG V PYG
Sbjct: 221 KSIFRGRVIKVLPKRTNLPGISSTDRG------GLRGH----PGARVGSFPYG 263
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 56/126 (44%), Positives = 78/126 (61%)
Query: 100 TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFV 158
T E+E+ D+RS+YVGNVD+ T E+++HF CG V RVTI DKF G K FA+VEF
Sbjct: 36 TAEEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQ 95
Query: 159 EIDAVQNALLLNETELHGRQLKVSAKRTNIPGM-KQFRGRRPNTFG--FRGRRPFIPGVP 215
++++VQ AL+L+ T R++ V+ KRTN PGM + ++P F G+ GV
Sbjct: 96 KLESVQLALVLSGTMFRNRKIMVTLKRTNKPGMGRTATAQKPAHFAKSSHGKPGSHQGVT 155
Query: 216 FVPYGY 221
V Y Y
Sbjct: 156 VVKYVY 161
>RGD|1562761 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562761 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
HOVERGEN:HBG107480 KO:K14396 CTD:390748 HOGENOM:HOG000208465
OMA:RCGEVHR OrthoDB:EOG4N04GD EMBL:BC158789 IPI:IPI00359848
RefSeq:NP_001107251.1 UniGene:Rn.154587 ProteinModelPortal:B0BNE4
SMR:B0BNE4 PRIDE:B0BNE4 GeneID:307920 KEGG:rno:307920
UCSC:RGD:1562761 NextBio:658097 Genevestigator:B0BNE4
Uniprot:B0BNE4
Length = 269
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 47/90 (52%), Positives = 62/90 (68%)
Query: 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEID 161
E E D RS+YVGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF
Sbjct: 132 ENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKS 191
Query: 162 AVQNALLLNETELHGRQLKVSAKRTNIPGM 191
+VQ A+ L+E+ GR +KV KRTN PG+
Sbjct: 192 SVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221
>UNIPROTKB|G3V9K1 [details] [associations]
symbol:Pabpn1l "Similar to embryonic pol(YA) binding
protein 2 (Predicted)" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562761 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473972 GeneTree:ENSGT00390000001517 UniGene:Rn.154587
Ensembl:ENSRNOT00000045052 Uniprot:G3V9K1
Length = 284
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 47/90 (52%), Positives = 62/90 (68%)
Query: 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEID 161
E E D RS+YVGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF
Sbjct: 147 ENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKS 206
Query: 162 AVQNALLLNETELHGRQLKVSAKRTNIPGM 191
+VQ A+ L+E+ GR +KV KRTN PG+
Sbjct: 207 SVQAAVRLDESTFRGRVIKVLPKRTNFPGI 236
>MGI|MGI:2685954 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISA] [GO:0008143 "poly(A) RNA binding" evidence=ISA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2685954 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 CTD:390748 OMA:RCGEVHR
EMBL:BC141316 EMBL:BC141317 EMBL:BG080308 EMBL:BG067238
EMBL:CA556976 EMBL:BM225984 EMBL:C85607 EMBL:C85611 EMBL:C86787
EMBL:BK001615 IPI:IPI00381169 RefSeq:NP_001007463.1
UniGene:Mm.25449 ProteinModelPortal:Q5XFR0 SMR:Q5XFR0
PhosphoSite:Q5XFR0 PRIDE:Q5XFR0 Ensembl:ENSMUST00000093059
GeneID:382035 KEGG:mmu:382035 UCSC:uc009ntk.1 eggNOG:NOG288813
GeneTree:ENSGT00390000001517 InParanoid:Q5XFR0 OrthoDB:EOG4N04GD
NextBio:402874 Bgee:Q5XFR0 CleanEx:MM_PABPNL1 Genevestigator:Q5XFR0
GermOnline:ENSMUSG00000069867 Uniprot:Q5XFR0
Length = 273
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 51/117 (43%), Positives = 72/117 (61%)
Query: 76 ALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGT 135
A E +A+V + + S T E E D RS++VGNVDY + E++ +F CG
Sbjct: 109 ATEEERAEVRQLLSPETVDCFFSRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGE 168
Query: 136 VNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 191
++RVTIL DKF G PKG+AY+EF +V+ A+ L+E+ GR +KV KRTN PG+
Sbjct: 169 IHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225
>SGD|S000001440 [details] [associations]
symbol:SGN1 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0016071 "mRNA metabolic process" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001440 GO:GO:0005737 GO:GO:0016071
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
EMBL:Z38062 eggNOG:COG0724 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 OrthoDB:EOG44N22T PIR:S48435
RefSeq:NP_012266.1 ProteinModelPortal:P40561 SMR:P40561
DIP:DIP-6566N IntAct:P40561 MINT:MINT-388965 STRING:P40561
PaxDb:P40561 PeptideAtlas:P40561 EnsemblFungi:YIR001C GeneID:854817
KEGG:sce:YIR001C CYGD:YIR001c OMA:TASPPEN NextBio:977657
Genevestigator:P40561 GermOnline:YIR001C Uniprot:P40561
Length = 250
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 53/129 (41%), Positives = 78/129 (60%)
Query: 68 KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQ--AEKEEVDSRSIYVGNVDYACTPEE 125
K+ +++ L E+ K+ E G Q S S + A + E DSRSI+VGN+ TPE+
Sbjct: 21 KKNDKQELELDELVGKLSIE-GTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQ 79
Query: 126 VQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184
++ HF+ CG + R+T+L D+ G PKG+ Y+EF + AL LN EL G+++ VS K
Sbjct: 80 IEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRK 139
Query: 185 RTNIPGMKQ 193
RTNIPG +
Sbjct: 140 RTNIPGFNR 148
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 174 (66.3 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 50/145 (34%), Positives = 73/145 (50%)
Query: 57 SKDLEDMKKRLKEIEEEAGA---LREMQAKVE--KEMGA-VQDSSSTSATQA-EKEEVDS 109
SK L +K+++ ++ A +E A + K GA + D A E D
Sbjct: 205 SKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDK 264
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y +++HF CG++ V I+ DK G KGF YV F D+V AL
Sbjct: 265 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 324
Query: 169 LNETELHGRQLKVSAKRTNIPGMKQ 193
LN +EL GR+L+V + N KQ
Sbjct: 325 LNNSELMGRKLRVM-RSVNKEKFKQ 348
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 174 (66.3 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 50/145 (34%), Positives = 73/145 (50%)
Query: 57 SKDLEDMKKRLKEIEEEAGA---LREMQAKVE--KEMGA-VQDSSSTSATQA-EKEEVDS 109
SK L +K+++ ++ A +E A + K GA + D A E D
Sbjct: 227 SKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDK 286
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y +++HF CG++ V I+ DK G KGF YV F D+V AL
Sbjct: 287 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 346
Query: 169 LNETELHGRQLKVSAKRTNIPGMKQ 193
LN +EL GR+L+V + N KQ
Sbjct: 347 LNNSELMGRKLRVM-RSVNKEKFKQ 370
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 51/151 (33%), Positives = 73/151 (48%)
Query: 57 SKDLEDMKKRLKEIEEEAGAL-----REMQAKVEKEMGA-VQDSSSTSATQA-EKEEVDS 109
SK L +K+++ ++ A AK + GA + D A E D
Sbjct: 223 SKKLAAIKRKIHPDQKNINAYVVFKDESAAAKALERNGAQIADGFRIRVDLASETSSRDK 282
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y V++HF CG+V V I+ D G +GF YV F DAV AL
Sbjct: 283 RSVFVGNLPYKVEESAVEKHFLDCGSVVAVRIVRDPVTGVGRGFGYVLFENTDAVHLALK 342
Query: 169 LNETELHGRQLKV-------SAKRTNIPGMK 192
LN +EL GR+L+V K+ + PG+K
Sbjct: 343 LNNSELMGRKLRVMRSIHKEKLKQNSNPGLK 373
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 166 (63.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 48/133 (36%), Positives = 68/133 (51%)
Query: 57 SKDLEDMKKRLKEIEEEAGAL----REMQA-KVEKEMGA-VQDSSSTSATQA-EKEEVDS 109
SK L +K+++ ++ A E A K K GA + D A E D
Sbjct: 227 SKKLAAIKRKIHPDQKYINAYVVFKDESSATKALKRNGAQIADGFRIRVDLASETSSRDK 286
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y V++HF CG++ V I+ D+ G +GF YV F DAV AL
Sbjct: 287 RSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFENTDAVHLALK 346
Query: 169 LNETELHGRQLKV 181
LN +EL GR+L+V
Sbjct: 347 LNNSELMGRKLRV 359
>TAIR|locus:2087685 [details] [associations]
symbol:AT3G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
IPI:IPI01019808 RefSeq:NP_566430.3 UniGene:At.42987
UniGene:At.63536 ProteinModelPortal:F4J9U9 SMR:F4J9U9 PRIDE:F4J9U9
EnsemblPlants:AT3G12640.1 GeneID:820444 KEGG:ath:AT3G12640
OMA:LVEYVIV Uniprot:F4J9U9
Length = 638
Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 39/107 (36%), Positives = 58/107 (54%)
Query: 82 AKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTI 141
A V++E + T +T E+ SR+I+V NV + T + + +HF G V + I
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 511
Query: 142 LTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTN 187
+TD GQP G AY+EF +A +NAL L+ T R LK+ K +N
Sbjct: 512 VTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKI-VKGSN 557
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 162 (62.1 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 44/127 (34%), Positives = 68/127 (53%)
Query: 68 KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQ 127
KE A AL+ A++ + D +S +A++ D RS++VGN+ Y ++
Sbjct: 249 KEERAAAKALQRNGAQIAEGFRIRVDLASETASR------DKRSVFVGNLPYRVDESALE 302
Query: 128 QHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186
+HF CG++ V I+ + G +GF YV F DAV AL LN +EL GR+L+V +
Sbjct: 303 EHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSV 361
Query: 187 NIPGMKQ 193
N +KQ
Sbjct: 362 NKEKLKQ 368
>MGI|MGI:1098653 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1098653 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 KO:K14837 CTD:23029 HOVERGEN:HBG052167
OrthoDB:EOG46DM2Z EMBL:AK078099 IPI:IPI00225915 RefSeq:NP_766350.2
UniGene:Mm.28199 ProteinModelPortal:Q8C5L7 SMR:Q8C5L7
PhosphoSite:Q8C5L7 PRIDE:Q8C5L7 GeneID:52202 KEGG:mmu:52202
InParanoid:Q8C5L7 NextBio:308648 Bgee:Q8C5L7 CleanEx:MM_RBM34
Genevestigator:Q8C5L7 GermOnline:ENSMUSG00000033931 Uniprot:Q8C5L7
Length = 375
Score = 159 (61.0 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 43/127 (33%), Positives = 68/127 (53%)
Query: 68 KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQ 127
K+ A AL+ A++ + D +S +A++ D RS++VGN+ Y ++
Sbjct: 255 KDESAAAKALQRNGAQIAEGFRIRVDLASETASR------DKRSVFVGNLPYKIEDSALE 308
Query: 128 QHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186
+HF CG++ V I+ + G +GF YV F DAV AL LN +EL GR+L+V +
Sbjct: 309 EHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSV 367
Query: 187 NIPGMKQ 193
N +KQ
Sbjct: 368 NKEKLKQ 374
>FB|FBgn0035063 [details] [associations]
symbol:Eap "Exu-associated protein" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P52298
KO:K14789 ChiTaRS:RPL22 FlyBase:FBgn0035063 EMBL:BT030793
RefSeq:NP_523855.1 UniGene:Dm.30940 SMR:Q9W108 IntAct:Q9W108
MINT:MINT-1546135 EnsemblMetazoa:FBtr0072374 GeneID:37964
KEGG:dme:Dmel_CG3594 UCSC:CG3594-RA CTD:37964 InParanoid:Q9W108
OMA:IRIPKKR GenomeRNAi:37964 NextBio:806275 Uniprot:Q9W108
Length = 250
Score = 153 (58.9 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 40/130 (30%), Positives = 66/130 (50%)
Query: 56 NSKDLEDMKKRLK-EIEEEAGALREMQAKVEKEMGAVQD---SSSTSATQAEKEEVDSRS 111
N D ED K + + ++EA A + E+E A S S+ + +
Sbjct: 56 NPSDPEDSKSEDEAKSDDEAAAEGSAASGAEEEESAENGQITSDQLSSLLRGASKTNRHV 115
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNE 171
+YV N+++ T ++++ HF + GTV + I + G GFA+VE ++ + QNA L+
Sbjct: 116 LYVTNLNFETTKDDLELHFSAAGTVKSIRIPKKRRG---GFAFVEMADLSSFQNAFQLHN 172
Query: 172 TELHGRQLKV 181
TEL GR +KV
Sbjct: 173 TELQGRNIKV 182
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-L 168
S+YVGNV Y T EE+ +F + G VN V I+ D+ G+P+GFA+VEF E Q A+
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 169 LNETELHGRQLKVS 182
LN +GR L+V+
Sbjct: 67 LNGVAFNGRNLRVN 80
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-L 168
S+YVGN + T EE+ F S G +N V I+ D+ G+P+GFA++EF E + Q A+
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 169 LNETELHGRQLKVS 182
+N E +GR L+V+
Sbjct: 66 MNGAEFNGRPLRVN 79
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 156 (60.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 40/114 (35%), Positives = 60/114 (52%)
Query: 71 EEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEV--DSRSIYVGNVDYACTPEEVQQ 128
+EE A++ + K + V A K + + RS+++GN+ Y + V++
Sbjct: 213 KEERDAVKALNYK--RNGTEVASGFHIRVDSASKNSLHDNKRSVFLGNLAYDISDSAVRE 270
Query: 129 HFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKV 181
HF CG V V I+ D+ G KGF YV F DAV AL LN ++L GR+L+V
Sbjct: 271 HFADCGDVVAVRIVRDRQSGMGKGFGYVLFENTDAVHLALKLNNSDLMGRKLRV 324
>UNIPROTKB|H0YJH9 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HGNC:HGNC:8565 Ensembl:ENST00000555295 Uniprot:H0YJH9
Length = 96
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/53 (56%), Positives = 40/53 (75%)
Query: 140 TILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 191
TIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+
Sbjct: 2 TILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 54
>MGI|MGI:2447622 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2447622 GO:GO:0007275
GO:GO:0030154 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH466521
HSSP:P33240 CTD:54033 eggNOG:NOG245318 HOGENOM:HOG000146448
HOVERGEN:HBG061506 EMBL:AC166995 EMBL:BC050779 EMBL:AK039297
IPI:IPI00133149 RefSeq:NP_938044.1 UniGene:Mm.273214
ProteinModelPortal:Q80YT9 SMR:Q80YT9 Ensembl:ENSMUST00000046378
Ensembl:ENSMUST00000114253 GeneID:224344 KEGG:mmu:224344
UCSC:uc007zro.1 GeneTree:ENSGT00690000102191 NextBio:377164
Bgee:Q80YT9 Genevestigator:Q80YT9 Uniprot:Q80YT9
Length = 238
Score = 146 (56.5 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 41/125 (32%), Positives = 66/125 (52%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAV 163
+EE D R+++VGN++ E + + F G + +VT+ D+ G+PK F +V F ++V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESV 63
Query: 164 QNAL-LLNETELHGRQLKVS----AKRTNIPGMKQFRG-RRPNTFGFRGR----RPFIPG 213
A+ LLN L+GR + V + R++ P + F + N+ FR RP P
Sbjct: 64 SYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCAKINSHSFRNDEMAGRPSFP- 122
Query: 214 VPFVP 218
VPF P
Sbjct: 123 VPFFP 127
>UNIPROTKB|Q804A9 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005737
GO:GO:0030154 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0007283 GO:GO:0003723 eggNOG:NOG260394
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 EMBL:AY211387
IPI:IPI00575414 RefSeq:NP_989549.1 UniGene:Gga.5133
ProteinModelPortal:Q804A9 STRING:Q804A9 GeneID:374054
KEGG:gga:374054 HOGENOM:HOG000246400 InParanoid:Q804A9
NextBio:20813576 Uniprot:Q804A9
Length = 289
Score = 149 (57.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 32/128 (25%), Positives = 67/128 (52%)
Query: 80 MQAKVEKEMGAVQDSSSTSATQAE-----KEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 134
M A E + G++ + ++ S+T + + ++ +++VG +D E++ +F+ G
Sbjct: 1 MSANAEAQCGSISEDNTHSSTTCQGYVLPEGKIMPNTVFVGGIDIRMNEAEIRSYFEQYG 60
Query: 135 TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQF 194
TV V I+TD+ G KG+ +V F++ VQ ++ ++ +HG++LK+ + +
Sbjct: 61 TVKEVKIITDRTGVSKGYGFVSFLDNVDVQK-IVESQISVHGKRLKLGPAIRKQQNLCSY 119
Query: 195 RGRRPNTF 202
RP F
Sbjct: 120 MQPRPLAF 127
>RGD|1305195 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305195 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 GeneTree:ENSGT00690000102191
IPI:IPI00363165 Ensembl:ENSRNOT00000047240 UCSC:RGD:1305195
Uniprot:D3ZQ24
Length = 238
Score = 145 (56.1 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 41/125 (32%), Positives = 66/125 (52%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAV 163
+EE D R+++VGN++ E + + F G + +VT+ D+ G+PK F +V F ++V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESV 63
Query: 164 QNAL-LLNETELHGRQLKVSAK----RTNIPGMKQFRG-RRPNTFGFRGR----RPFIPG 213
A+ LLN L+GR + V + R++ P + F + N+ FR RP P
Sbjct: 64 SYAIALLNGIRLYGRPINVQYRFGNSRSSEPANQSFESCAKINSHSFRNDEMVCRPSFP- 122
Query: 214 VPFVP 218
VPF P
Sbjct: 123 VPFFP 127
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 152 (58.6 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 44/131 (33%), Positives = 68/131 (51%)
Query: 69 EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDS----RSIYVGNVDYACTPE 124
EI ++A AL + K E + S + QA+ ++ R+I+VG++ Y+ T E
Sbjct: 216 EIAQQALALNGSEFK-ENHLRVTPASMAEKFGQAKDQQPSDKDAKRTIFVGSLKYSATEE 274
Query: 125 EVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184
++++ F SCG ++ + L D KG AYV F + DAV AL LN+T L R + V
Sbjct: 275 QLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALELNQTLLDDRPINVERY 334
Query: 185 RTNIPGMKQFR 195
+ G KQ R
Sbjct: 335 QVKKLGAKQVR 345
>UNIPROTKB|F1P368 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 GO:GO:0003730 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 IPI:IPI00575414
OMA:YVIPPAY EMBL:AADN02001034 Ensembl:ENSGALT00000018341
Uniprot:F1P368
Length = 289
Score = 148 (57.2 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 32/128 (25%), Positives = 66/128 (51%)
Query: 80 MQAKVEKEMGAVQDSSSTSATQAE-----KEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 134
M A E + G + + ++ S+T + + ++ +++VG +D E++ +F+ G
Sbjct: 1 MSANAEAQCGTISEDNTHSSTTCQGYVLPEGKIMPNTVFVGGIDIRMNEAEIRSYFEQYG 60
Query: 135 TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQF 194
TV V I+TD+ G KG+ +V F++ VQ ++ ++ +HG++LK+ + +
Sbjct: 61 TVKEVKIITDRTGVSKGYGFVSFLDNVDVQK-IVESQISVHGKRLKLGPAIRKQQNLCSY 119
Query: 195 RGRRPNTF 202
RP F
Sbjct: 120 MQPRPLAF 127
>SGD|S000005401 [details] [associations]
symbol:NOP12 "Protein involved in pre-rRNA processing and
ribosomal biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0030684 "preribosome" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005401 GO:GO:0005730 EMBL:BK006948 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000463 eggNOG:COG0724
GO:GO:0030684 KO:K14837 HOGENOM:HOG000157415 OMA:SIRYRSI
OrthoDB:EOG4JHGQR EMBL:Z74783 PIR:S66726 RefSeq:NP_014601.1
ProteinModelPortal:Q08208 SMR:Q08208 DIP:DIP-6505N IntAct:Q08208
MINT:MINT-669520 STRING:Q08208 PaxDb:Q08208 PeptideAtlas:Q08208
EnsemblFungi:YOL041C GeneID:854116 KEGG:sce:YOL041C CYGD:YOL041c
GeneTree:ENSGT00390000011249 NextBio:975813 Genevestigator:Q08208
GermOnline:YOL041C Uniprot:Q08208
Length = 459
Score = 152 (58.6 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALL 168
RSI+VGN+D+ E + +HF+ CG + V I+ D K KGFAYV+F ++ +V ALL
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
Query: 169 LNETELHGRQLKVSAKRTNIPGMK 192
LNE + + K + T P K
Sbjct: 339 LNEKPMKSQ--KQEDENTKKPTKK 360
>TAIR|locus:2061077 [details] [associations]
symbol:AT2G24350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10 EMBL:BT033027
EMBL:AK228942 IPI:IPI00535352 RefSeq:NP_180012.2 UniGene:At.13805
UniGene:At.39171 ProteinModelPortal:Q0WPW8 SMR:Q0WPW8 PRIDE:Q0WPW8
EnsemblPlants:AT2G24350.1 GeneID:816971 KEGG:ath:AT2G24350
TAIR:At2g24350 eggNOG:NOG242858 HOGENOM:HOG000120691
InParanoid:Q0WPW8 OMA:TEPHIAY PhylomeDB:Q0WPW8
ProtClustDB:CLSN2690892 Genevestigator:Q0WPW8 Uniprot:Q0WPW8
Length = 537
Score = 153 (58.9 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 41/127 (32%), Positives = 74/127 (58%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAE-KEEV-DSRSIYVGN 116
+++++K++++E+E LR +Q+K K+ + S + +++ +E+V +SR I+V N
Sbjct: 396 EIKNVKEKMQELE-----LRIIQSKQLKKQKVEERKPSPQSGESQYQEDVSESRVIHVTN 450
Query: 117 VDYACTPEEVQQHFQS-CGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNALLLNETEL 174
V YA E + F S CG V V ++TD + PKG A+V F ++V A+ L+ T
Sbjct: 451 VYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVALSGTMF 510
Query: 175 HGRQLKV 181
+ R +KV
Sbjct: 511 YSRPIKV 517
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-L 168
S+YVGN + T +++ +F G V+ V I+ D+ G+P+GFA+VEF E A Q A+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 169 LNETELHGRQLKVS-AKRTN 187
N + +GR L+V+ A+ N
Sbjct: 65 FNGVDFNGRALRVNLAQNRN 84
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-L 168
S+YVGN + T +++ +F G V+ V I+ D+ G+P+GFA+VEF E A Q A+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 169 LNETELHGRQLKVS-AKRTN 187
N + +GR L+V+ A+ N
Sbjct: 65 FNGVDFNGRALRVNLAQNRN 84
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 94 SSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGF 152
+SSTS+ +E D R++YVGN+ Y V++ F G+V+ V ++ DK G+ +GF
Sbjct: 56 ASSTSSNTIASDE-DVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGF 114
Query: 153 AYVEFVEIDAVQNALLLNETELHGRQLKV 181
+VE D + LN+TE R LKV
Sbjct: 115 GFVEMASDDLDKAISALNDTEFQQRTLKV 143
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 94 SSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGF 152
+SSTS+ +E D R++YVGN+ Y V++ F G+V+ V ++ DK G+ +GF
Sbjct: 56 ASSTSSNTIASDE-DVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGF 114
Query: 153 AYVEFVEIDAVQNALLLNETELHGRQLKV 181
+VE D + LN+TE R LKV
Sbjct: 115 GFVEMASDDLDKAISALNDTEFQQRTLKV 143
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 133 (51.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 34/105 (32%), Positives = 55/105 (52%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNAL 167
S +++VGN+ + T +++ F CG + + + TD + G+ KGF YV F +ID+ + +
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424
Query: 168 LLNETELHGR--QLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPF 210
+N + GR +L S RT G + RG GF GR F
Sbjct: 425 EMNGHFIAGRPCRLDFSTPRTG-GGSRGGRGGFGGRGGFGGRGGF 468
Score = 117 (46.2 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 32/154 (20%), Positives = 72/154 (46%)
Query: 54 NANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA--TQAEKEEVDSRS 111
+++S+ D + + + + E ++ EK+ A S A T+ ++ ++ +
Sbjct: 205 SSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCT 264
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALLLN 170
++VG + + + + Q F+ GT+ ++ D + G+ KG+ YV+F +A + A+ N
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 171 ET-ELHGRQLKVSAKRTNIPGMKQFRGRRPNTFG 203
T E+ GR + + + + +R FG
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFG 358
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 56 NSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS 111
+S + + E EEE + + + K E + DS S+S + +E + DS S
Sbjct: 170 SSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSS 225
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 53 PNANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDS 109
P + K ++ KK K+ EE + + E E + + SS+S +++ E S
Sbjct: 64 PEPSKKSVKKQKKSKKK-EESSSESESESSSSESESSSSESESSSSESESSSSESSS 119
Score = 53 (23.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 61 EDMKKRLKEIEEEAGALREMQA--KVEKEMGAVQDSSS-TSATQAEKEEVDSRS 111
E+ K+ E + + E +A K+E++ + DSSS +S++++E E S S
Sbjct: 131 EEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSES 184
Score = 52 (23.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 12/53 (22%), Positives = 32/53 (60%)
Query: 54 NANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEE 106
+++S + E+ ++ + +IEE+ +E + E + + S +S++++E+EE
Sbjct: 140 SSSSSESEEEEEAVVKIEEK----KESSSDSSSESSSSESESESSSSESEEEE 188
Score = 51 (23.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 58 KDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSR 110
KD +KK +KE + GA+ E +K +K ++++ A Q+ K +V +
Sbjct: 4 KDKTSVKKSVKETASKKGAI-EKPSKSKK---ITKEAAKEIAKQSSKTDVSPK 52
Score = 47 (21.6 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 65 KRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS 111
KR E ++++ + +KE + + S +S++++E +S S
Sbjct: 59 KRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESES 105
Score = 46 (21.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 55 ANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEV 107
++S + E E E E+ K E++ + +SSS+S ++ E+E V
Sbjct: 105 SSSSESESSSSESSSSESE----EEVIVKTEEKKESSSESSSSSESEEEEEAV 153
Score = 43 (20.2 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 54 NANSKDLEDMKKRLKEIEE---EAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSR 110
++ S++ E++ ++ +E +E E+ + E + E G DS S+S +++E D +
Sbjct: 181 SSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESG---DSDSSSDSESESSSEDEK 237
Score = 38 (18.4 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 68 KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS 111
+E+ E+ +E ++ + + DSSS S + +S S
Sbjct: 188 EEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESES 231
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 147 (56.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 39/113 (34%), Positives = 58/113 (51%)
Query: 100 TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFV 158
+Q K + RSI+VGN+ Y + +Q HFQ CG + V ++ D+ G KGF YV F
Sbjct: 243 SQHSKHD-HKRSIFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFE 301
Query: 159 EIDAVQNALLLNETELHGRQLKVSA-----KRTNIPGMKQFRGRRPNTFGFRG 206
D+V AL LN + L R+++V K P ++ G+R G +G
Sbjct: 302 SPDSVMLALKLNGSTLQQRKIRVKRSVKKEKEKKTPPGRKAEGQRTGG-GLKG 353
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 141 (54.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 33/117 (28%), Positives = 62/117 (52%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALL 168
+S+++GN+ Y T E+V+ + GTV + ++ + + G+PKG+ + +F + DA +A+
Sbjct: 8 KSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVR 67
Query: 169 -LNETELHGRQLKVSAKRTN----IPGMKQFRGRRPNTFGFRGRRPFIPGVPFVPYG 220
LN+ E+ GR+++V N +P + P G G P +P +P G
Sbjct: 68 NLNDYEIMGRKIRVDWPHNNEKDSVPEDYSQPSQMPGQDGQLGGPPLSAPLPPLPPG 124
>RGD|619928 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
RGD:619928 GO:GO:0005634 eggNOG:NOG238057 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD UniGene:Rn.39199 EMBL:U94858 IPI:IPI00195515
STRING:O08729 UCSC:RGD:619928 InParanoid:O08729
Genevestigator:O08729 Uniprot:O08729
Length = 85
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVG 115
+LE +K R++E+EEEA L+E+Q +V K+M + + EK E D+RSIYVG
Sbjct: 19 ELEAIKARVREMEEEADKLKELQNEVXKQMXMSPPPGNAGPVIMSLEEKMEADARSIYVG 78
Query: 116 NVDYACT 122
NVDY T
Sbjct: 79 NVDYGAT 85
>ASPGD|ASPL0000069068 [details] [associations]
symbol:AN7350 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001304 GO:GO:0003743 ProteinModelPortal:C8VCK1
EnsemblFungi:CADANIAT00000083 HOGENOM:HOG000167806 OMA:EPPMERP
Uniprot:C8VCK1
Length = 497
Score = 135 (52.6 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 113 YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNALLLNE 171
++GN+ + T ++ F CG N V I+ DK + PKGF YVEF +D ++ AL L+
Sbjct: 85 HIGNLSFDATSGDISDLFADCGVTN-VRIVEDKLTKAPKGFGYVEFETVDGLKKALDLSG 143
Query: 172 TELHGRQLKVS 182
L GR ++VS
Sbjct: 144 ATLQGRSIRVS 154
Score = 43 (20.2 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 189 PGMKQFRGRRPNTFGFRGRRP 209
P M++ R R + GFR R P
Sbjct: 231 PPMREGRPRNDDNAGFRTRSP 251
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 35/107 (32%), Positives = 55/107 (51%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDA 162
K + IYVG++ Y T +E+Q F G + ++ D+ G+ KGFA++ + DA
Sbjct: 12 KMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDA 71
Query: 163 VQNALL-LNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 208
Q A+ N +L GR+++V+ R N G + RR G RG R
Sbjct: 72 AQEAVSKANGIDLQGRKIRVNIARENT-GDR----RRDGGSGGRGGR 113
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 35/107 (32%), Positives = 55/107 (51%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDA 162
K + IYVG++ Y T +E+Q F G + ++ D+ G+ KGFA++ + DA
Sbjct: 12 KMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDA 71
Query: 163 VQNALL-LNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 208
Q A+ N +L GR+++V+ R N G + RR G RG R
Sbjct: 72 AQEAVSKANGIDLQGRKIRVNIARENT-GDR----RRDGGSGGRGGR 113
>POMBASE|SPAC16E8.06c [details] [associations]
symbol:nop12 "RNA-binding protein Nop12 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364
"rRNA processing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC16E8.06c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 KO:K14837
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR PIR:T37786
RefSeq:NP_594218.1 ProteinModelPortal:O13741 STRING:O13741
EnsemblFungi:SPAC16E8.06c.1 GeneID:2542314 KEGG:spo:SPAC16E8.06c
NextBio:20803375 Uniprot:O13741
Length = 438
Score = 139 (54.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 34/101 (33%), Positives = 56/101 (55%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALL 168
R ++VGN+ + E + ++F CG+++ V I+ D K KGFAY++F + V ALL
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 169 LNETEL-HGRQLKVS-AKRTNIPGMKQFRGRRPNTFGFRGR 207
LNE ++ GR L++ AK T + + + T +GR
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKPKSITRSKRGDEKTRTLQGR 370
>FB|FBgn0022943 [details] [associations]
symbol:Cbp20 "cap binding protein 20" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
regulation of viral genome replication" evidence=IMP] [GO:0035195
"gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
Uniprot:Q9V3L6
Length = 154
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 33/114 (28%), Positives = 59/114 (51%)
Query: 87 EMGAVQDSS-STSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 145
E+ + +D S ++ E+ DS ++YVGN+ + T E++ + F CG V + + DK
Sbjct: 6 ELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDK 65
Query: 146 FGQ-PKGFAYVEF-VEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ + P GF +VE+ V +A +N T L R ++V + G + RG+
Sbjct: 66 YKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGRGK 119
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 33/89 (37%), Positives = 51/89 (57%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEID 161
A E D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 162 AVQNAL-LLNETELHGRQLKVSAKRTNIP 189
+V A+ LLN +L+GR +K+ + +P
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQFRSVVMP 90
>POMBASE|SPAC3G6.04 [details] [associations]
symbol:rnp24 "RNA-binding protein Rnp24" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC3G6.04 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 HOGENOM:HOG000193653
OrthoDB:EOG47DDRF EMBL:U24430 EMBL:AB027862 PIR:T38723
RefSeq:NP_594970.1 ProteinModelPortal:Q09100 STRING:Q09100
EnsemblFungi:SPAC3G6.04.1 GeneID:2542965 KEGG:spo:SPAC3G6.04
NextBio:20804000 Uniprot:Q09100
Length = 369
Score = 134 (52.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 27/76 (35%), Positives = 48/76 (63%)
Query: 95 SSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILT-DKFGQPKGFA 153
S T++ Q+ K+E S ++VGN+D+ T ++++HF G + RV ++T + G+ KGF
Sbjct: 214 SKTASIQSSKKEPSS-ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFG 272
Query: 154 YVEFVEIDAVQNALLL 169
+V+F +ID A+ L
Sbjct: 273 FVDFPDIDTCMKAMEL 288
Score = 38 (18.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 56 NSKDLEDMKKRLKEIEEEAGALREMQAKVEK 86
N+K+ + KKR K E+ G ++ V K
Sbjct: 11 NNKEGQPDKKRKKHESEKEGENEVLEIDVTK 41
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 130 (50.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTI-LTDKFGQPKGFAYVEFVEIDAVQ 164
E + +I N+ + V++ F CG+++RV++ + + G+ KGFA+V F DAV+
Sbjct: 157 EGEPTTIVCRNIAFTVDETLVKEFFSKCGSISRVSLPVYEDSGRLKGFAFVSFDSEDAVE 216
Query: 165 NALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 208
A+ L T+ GR+++V + G GR GF G R
Sbjct: 217 KAIALTGTKFEGREIQVERSQRG-GGRSSSFGRGGGRGGFGGGR 259
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 63 MKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKE 105
M K K IE + E ++ E E ++SS+S +++E E
Sbjct: 1 MAKDQKAIESKKRKKEESES--ETESSEENNASSSSESESEDE 41
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 32/114 (28%), Positives = 56/114 (49%)
Query: 87 EMGAVQDSSSTSATQAEKEEVD-SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 145
E+ +D + Q +++ + S ++YVGN+ + T E++Q+ F CG V R+ + DK
Sbjct: 19 EISQYRDQHFRGSRQLQEKSLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDK 78
Query: 146 FGQ-PKGFAYVEF-VEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ P GF +VE+ DA +N T L R ++ G + RG+
Sbjct: 79 IKKTPCGFCFVEYYTRADAEHAMRFINGTRLDDRIIRTDWDAGFKEGRQYGRGK 132
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEID 161
A E D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 162 AVQNAL-LLNETELHGRQLKV 181
+V A+ LLN +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQN 165
E D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F +V
Sbjct: 4 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 62
Query: 166 AL-LLNETELHGRQLKV 181
A+ LLN +L+GR +K+
Sbjct: 63 AMNLLNGIKLYGRPIKI 79
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAV 163
+EE D R+++VGN++ E + + F G + +VTI D+ G PK F +V F ++V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGNPKSFGFVCFKHPESV 63
Query: 164 QNAL-LLNETELHGRQLKV 181
A+ LLN L+GR + V
Sbjct: 64 SYAIALLNGIRLYGRPINV 82
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 136 (52.9 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 34/110 (30%), Positives = 59/110 (53%)
Query: 85 EKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 144
EKE A +++S T+ + R ++V N+ ++ + ++ + F CGTVN V I+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 145 KFGQPKGFAYVEFVEIDAVQNALLLNET-ELHGRQLKVS-AKRTNIPGMK 192
K G+ +GFA+V + Q A+ +T ++ GR + VS A+R P K
Sbjct: 130 KDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPK 179
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 30/98 (30%), Positives = 51/98 (52%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNAL-LL 169
++VG +++ + ++ HF S G ++ V ++ D+ Q +GF ++ F + NA+ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 170 NETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR 207
N L GRQ++V G K RG R FG RGR
Sbjct: 68 NGESLDGRQIRVDHA-----G-KSARGTRGGAFGARGR 99
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 136 (52.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 37/119 (31%), Positives = 64/119 (53%)
Query: 72 EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS------IYVGNVDYACTPEE 125
E + A E+QA VE+E V++ + E+E+ +++ +YVGN+ Y T E
Sbjct: 73 EASSADDEIQASVEEEE-EVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSE 131
Query: 126 VQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182
+ Q F GTV V I+ DK + +GF +V I+ + A+ + N +++ GR +KV+
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVN 190
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 33/114 (28%), Positives = 58/114 (50%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNAL-LL 169
++VG +++ + ++ HF+S G ++ V ++ D+ Q +GF ++ F + + +A+ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 170 NETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR-RPFIPGVPFVPYGYG 222
N L GRQ++V G K RG R FG GR R + G YG G
Sbjct: 68 NGESLDGRQIRVDHA-----G-KSARGTRGGAFGAHGRGRSYSRGGGDQGYGSG 115
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 134 (52.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL 167
SR ++VGN+ Y + E++ F G V ++ D+ G+PKGF + E+ + D+ +A+
Sbjct: 7 SRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAV 66
Query: 168 L-LNETELHGRQLKV 181
LN+TE+ GR+L+V
Sbjct: 67 RNLNDTEIMGRKLRV 81
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 34/97 (35%), Positives = 48/97 (49%)
Query: 91 VQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQP 149
V DS A E+ + ++YVGN+ Y EV+ F G VN V ++ D K G+
Sbjct: 46 VPDSGKAQADD-EQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRR 104
Query: 150 KGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186
KGF +VE E A + + LN+ R LKV +T
Sbjct: 105 KGFGFVEMSEAGAQKAMVKLNDFNFQERTLKVREAKT 141
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 34/97 (35%), Positives = 48/97 (49%)
Query: 91 VQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQP 149
V DS A E+ + ++YVGN+ Y EV+ F G VN V ++ D K G+
Sbjct: 46 VPDSGKAQADD-EQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRR 104
Query: 150 KGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186
KGF +VE E A + + LN+ R LKV +T
Sbjct: 105 KGFGFVEMSEAGAQKAMVKLNDFNFQERTLKVREAKT 141
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 33/114 (28%), Positives = 56/114 (49%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNAL-LL 169
++VG +++ + ++ HF S G ++ V ++ D+ Q +GF ++ F + +A+ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 170 NETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR-RPFIPGVPFVPYGYG 222
N L GRQ++V G K RG R FG GR R + G YG G
Sbjct: 68 NGESLDGRQIRVDHA-----G-KSARGTRGGAFGAHGRGRSYSRGGGDQGYGSG 115
>ZFIN|ZDB-GENE-030131-6724 [details] [associations]
symbol:zgc:77304 "zgc:77304" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6724 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG009324 KO:K13188 HSSP:O08583
EMBL:BC049507 IPI:IPI00496411 RefSeq:NP_956219.1 UniGene:Dr.75468
ProteinModelPortal:Q7ZWA5 SMR:Q7ZWA5 STRING:Q7ZWA5 GeneID:334784
KEGG:dre:334784 NextBio:20810542 ArrayExpress:Q7ZWA5 Uniprot:Q7ZWA5
Length = 252
Score = 132 (51.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 44/120 (36%), Positives = 59/120 (49%)
Query: 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQ 164
+E D R+++VGN+D T E + + F G + +V I + G+ K FA+V F +V
Sbjct: 5 DEAD-RTLFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNEGKSKLFAFVNFKHEVSVP 63
Query: 165 NAL-LLNETELHGRQLKVSAK----RTNIPGMKQFRGRRP---NTFGFRG-RRPFIPGVP 215
AL LLN LHGRQL + K N G + P NT G RG R P G P
Sbjct: 64 YALNLLNGIRLHGRQLNIKFKTGSSHINQEGKSPANSQNPSPANTPGHRGGRTPEQMGSP 123
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNAL-LL 169
++VG +++ + ++ HF S G ++ V ++ D+ Q +GF ++ F + +A+ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 170 NETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR 207
N L GRQ++V G K RG R FG RGR
Sbjct: 68 NGESLDGRQIRVDHA-----G-KSARGSRGGAFGGRGR 99
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 29/105 (27%), Positives = 54/105 (51%)
Query: 89 GAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FG 147
G Q S+ + S ++VG + + ++Q F S G V T++ D+ G
Sbjct: 14 GVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETG 73
Query: 148 QPKGFAYVEFVEIDAVQNALL-LNETELHGRQLKVS--AKRTNIP 189
+ +GF +V F D+ NA+ ++ EL+GRQ++V+ +R++ P
Sbjct: 74 RSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAP 118
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 129 (50.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 36/119 (30%), Positives = 58/119 (48%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQH--FQSCGTVNRVTILTDKFGQPKGFAYVEFVE 159
A DS +++V N+ Y+ EV+ F++CG V ++ + G +G+ YVEF E
Sbjct: 694 AHDSSKDSVTVFVSNLPYSIEEPEVKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKE 753
Query: 160 IDAVQNALLLNETELHGRQLKVS--AKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 216
+ Q AL L+ + GR + VS ++ P K FR + + FI G+PF
Sbjct: 754 EKSAQQALDLDRKNVEGRPMFVSPCVDKSKNPDFKMFR----YSTTLEKHKLFISGLPF 808
Score = 111 (44.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/87 (28%), Positives = 50/87 (57%)
Query: 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV-EIDAVQN 165
++ +++ + ++CT EE++ ++ GTV + ++T++ G+PKG AYVE+ E A Q
Sbjct: 796 LEKHKLFISGLPFSCTKEELEGICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 855
Query: 166 ALLLNETELHGRQLKVSAKRTNIPGMK 192
L ++ + +KV+ +N P K
Sbjct: 856 VLKMDGMTIKENVIKVAI--SNPPQRK 880
Score = 48 (22.0 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 60 LEDMKKRLKEIEEEAGALREMQAKV-EKEMGAVQDSSSTSATQAEKEEVDSRSI 112
LED +++ E + E + K EKE VQ A Q +K + +++
Sbjct: 558 LEDWDLAIQKTETRLARVNEQRMKAAEKEAALVQQEEE-KAEQRKKVRAEKKAL 610
Score = 44 (20.5 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 61 EDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSR 110
E+ ++ K++ E AL++ + + + A +D + E+E+ R
Sbjct: 594 EEKAEQRKKVRAEKKALKKKKTRGADKRKAGEDDDERECGEEEEEQPSKR 643
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>ZFIN|ZDB-GENE-020419-31 [details] [associations]
symbol:ncbp2 "nuclear cap binding protein subunit 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0046833 "positive regulation of RNA export from nucleus"
evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
Length = 155
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 101 QAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPK-GFAYVEFVE 159
+ EK S ++YVGN+ + T E+V + F CG V R+ I DK + GF +VE+
Sbjct: 30 EQEKLLKQSATLYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFCFVEYYT 89
Query: 160 IDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+NA+ +N T L R ++ G + RG+
Sbjct: 90 RADAENAMRFVNGTRLDDRIIRTDWDAGFKEGRQYGRGK 128
>POMBASE|SPBC13A2.01c [details] [associations]
symbol:SPBC13A2.01c "nuclear cap-binding complex small
subunit (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000243 "commitment complex" evidence=ISO] [GO:0000339 "RNA cap
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005819 "spindle" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005846 "nuclear cap binding complex"
evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC13A2.01c
GO:GO:0005829 GO:GO:0048471 GO:GO:0005819 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0051028 GO:GO:0000243 eggNOG:COG0724 GO:GO:0045292
GO:GO:0000339 HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846
HSSP:P52298 KO:K12883 RefSeq:NP_596414.1 ProteinModelPortal:Q9P383
SMR:Q9P383 STRING:Q9P383 EnsemblFungi:SPBC13A2.01c.1 GeneID:2539791
KEGG:spo:SPBC13A2.01c OMA:EIRRIIM OrthoDB:EOG4W11PG
NextBio:20800940 Uniprot:Q9P383
Length = 182
Score = 125 (49.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEI-DAVQNA 166
S +YVGN+ + T E++ F CG + R+ + D+F + P GF +VE+ E DA+ +
Sbjct: 31 SNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSL 90
Query: 167 LLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPG 213
++ T L R ++ G + RG R F PG
Sbjct: 91 KYISRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEFDPG 137
>UNIPROTKB|P57052 [details] [associations]
symbol:RBM11 "Splicing regulator RBM11" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AP001660 EMBL:AK091331
EMBL:BC030196 EMBL:AY077695 EMBL:AF519623 IPI:IPI00025663
IPI:IPI00855847 RefSeq:NP_658983.3 UniGene:Hs.283828 PDB:2YWK
PDBsum:2YWK ProteinModelPortal:P57052 SMR:P57052 IntAct:P57052
MINT:MINT-1452231 DMDM:9978670 PRIDE:P57052 DNASU:54033
Ensembl:ENST00000400577 GeneID:54033 KEGG:hsa:54033 UCSC:uc002yjn.4
CTD:54033 GeneCards:GC21P015588 HGNC:HGNC:9897 HPA:HPA045885
neXtProt:NX_P57052 PharmGKB:PA34260 eggNOG:NOG245318
HOGENOM:HOG000146448 HOVERGEN:HBG061506 InParanoid:P57052
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 PhylomeDB:P57052
EvolutionaryTrace:P57052 GenomeRNAi:54033 NextBio:56316
ArrayExpress:P57052 Bgee:P57052 CleanEx:HS_RBM11
Genevestigator:P57052 GermOnline:ENSG00000185272 Uniprot:P57052
Length = 281
Score = 131 (51.2 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAV 163
+EE D R+++VGN++ E + + F G + +VTI D+ G+PK F +V F ++V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESV 63
Query: 164 QNAL-LLNETELHGRQLKVS----AKRTNIPGMKQFRGR-RPNTFGFRGRRPFIPGVPFV 217
A+ LLN L+GR + V + R++ P + F + N+ +R + F
Sbjct: 64 SYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRSSF- 122
Query: 218 PYGY 221
P Y
Sbjct: 123 PMQY 126
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 130 (50.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 39/105 (37%), Positives = 56/105 (53%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEI-DAVQNALL 168
S+ V N+ C PEE+++ F+ G V V I D + GQP+GFA+VEFV+ DA +
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 169 LNETELHGRQLKV-----SAKRTNIPGMK-QFRGRRPNTFGFRGR 207
+N GR++ V S KR +K + R R P+ G R R
Sbjct: 108 MNRRSFAGREITVVVASESRKRPEEMRVKTRTRSREPS--GSRDR 150
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 115 (45.5 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 33/118 (27%), Positives = 63/118 (53%)
Query: 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV-EIDAVQN 165
++ +++ + ++CT EE+++ ++ GTV + ++T++ G+PKG AYVE+ E A Q
Sbjct: 37 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 96
Query: 166 ALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPFV-PYGYG 222
+ ++ + +KV+ +N P K +P T R+ PG P + P YG
Sbjct: 97 VMKMDGMTIKENIIKVAI--SNPPQRKV--PEKPET-----RKA--PGGPMLLPQTYG 143
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 115 (45.5 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 32/114 (28%), Positives = 55/114 (48%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNAL-LL 169
++VG +++ + ++ HF S G ++ V ++ D+ Q +GF ++ F + + + +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 170 NETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR-RPFIPGVPFVPYGYG 222
N L GRQ++V G K RG R FG GR R + G YG G
Sbjct: 68 NGESLDGRQIRVDHA-----G-KSARGTRGGAFGAHGRGRSYSRGGGDQGYGSG 115
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 115 (45.5 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 94 SSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGF 152
+SS S ++ V S+ +++G + + T + + + F CG V I+ D+ + KGF
Sbjct: 19 NSSASCFFTQRRGVASK-LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGF 77
Query: 153 AYVEFVEIDAVQNALL-LNETELHGRQLKV 181
+V F D Q AL+ N +L+GR + V
Sbjct: 78 GFVTFASADEAQKALMEFNGQQLNGRTIFV 107
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 120 (47.3 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEF-VEIDAVQNA 166
S ++YVGN+ + T E++Q+ F CG V R+ + DK + P GF +VE+ DA
Sbjct: 42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101
Query: 167 LLLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+N T L R ++ G + RG+
Sbjct: 102 RFINGTRLDDRIVRTDWDAGFKEGRQYGRGK 132
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 129 (50.5 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEID 161
A EE D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAEEAD-RTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 162 AVQNAL-LLNETELHGRQLKV 181
+V A+ LLN +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 121 (47.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF----RGR-RPFIPGV--PFV 217
++ +N + GRQ++V A +++ + +RG GF RGR R F G +V
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGECHEWV 123
Query: 218 PYG 220
P+G
Sbjct: 124 PWG 126
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 132 (51.5 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 37/136 (27%), Positives = 61/136 (44%)
Query: 71 EEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS-IYVGNVDYACTPEEVQQH 129
EEE A E +K K ++ A + + EE D S ++VGN+ + + +
Sbjct: 203 EEEKPAKTEAPSKKRK----AEEEEEAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEE 258
Query: 130 FQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETE-LHGRQLKVSAKRTN 187
F+ CGTV ++TD+ G+ KGF YV+F + + A + + GR++KV
Sbjct: 259 FKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGK 318
Query: 188 IPGMKQFRGRRPNTFG 203
G R +G
Sbjct: 319 ATNSNDAAGARAKKYG 334
Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
Identities = 38/144 (26%), Positives = 68/144 (47%)
Query: 72 EEAGALRE-MQAKVEKEMGAVQDSSSTSATQAEK--EEV--DSRSIYVGNVDYACTPEEV 126
E+ GA + + KV+ G +S+ + +A+K + V +S +++VGN+ + + V
Sbjct: 299 EKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDSV 358
Query: 127 QQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184
F V + + T++ G+ KGF YV F ++ ++A LN ++GR ++
Sbjct: 359 GAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYS 418
Query: 185 RTNIPGMKQ-FRGRRPNTFGFRGR 207
P F GR GF GR
Sbjct: 419 TPRPPREDGGFGGRGGGRGGFGGR 442
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 113 (44.8 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNAL 167
+ I+V + ++ E ++QHF G++N ++ DK + +GF +V F + D+VQ A+
Sbjct: 2 NNKIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAM 61
Query: 168 LLNETELHGRQLKVS 182
E E+ GR+L VS
Sbjct: 62 EA-ENEMGGRKLVVS 75
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 113 (44.8 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 27/101 (26%), Positives = 52/101 (51%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRG 206
++ +N + GRQ++V + + RG R + G RG
Sbjct: 64 MMAMNGKSVDGRQIRVD--QAGKSSDNRSRGYRGGSAGGRG 102
>UNIPROTKB|J9PA68 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:54033
OMA:YRFGSSR GeneTree:ENSGT00690000102191 EMBL:AAEX03016434
RefSeq:XP_535558.1 ProteinModelPortal:J9PA68
Ensembl:ENSCAFT00000043040 GeneID:478383 KEGG:cfa:478383
Uniprot:J9PA68
Length = 238
Score = 127 (49.8 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 34/108 (31%), Positives = 59/108 (54%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAV 163
+EE D R+++VGN++ E + + F G + +VTI D+ G+PK F +V F ++V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKTFGFVCFKHPESV 63
Query: 164 QNAL-LLNETELHGRQLKVS----AKRTNIPGMKQFRGR-RPNTFGFR 205
A+ LLN L+GR + V + R++ P + F + N+ +R
Sbjct: 64 SYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFENCIKINSHSYR 111
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 130 (50.8 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 92 QDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILT-DKFGQPK 150
QD + + T + + S+ ++VGN+ + T E +++HF CGTV V + T G+ K
Sbjct: 164 QDDGNNAPTSSGRPP--SKRLFVGNLSFDTTKEFLEEHFSQCGTVTNVHVATFQDSGKCK 221
Query: 151 GFAYVEFVEIDAVQNA 166
G+A+VEF +++A + A
Sbjct: 222 GYAWVEFEDLEAAKTA 237
Score = 108 (43.1 bits), Expect = 0.00072, P = 0.00072
Identities = 40/133 (30%), Positives = 65/133 (48%)
Query: 76 ALREMQAK--VEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQS- 132
ALR+ + K V S T+ ++ I++GN+ ++ T E++++ +
Sbjct: 34 ALRKAKKKATVADAKADTHPKSENGGTETAPQKRSDYGIWIGNLAFSVTKEDIRRFLTTN 93
Query: 133 CG----TVNRVTIL--TDKFG--QPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184
C T+ RV + +DK Q KGFAYV+F A++ AL L+E QL VS +
Sbjct: 94 CSFTDATITRVHLPKPSDKSSRAQNKGFAYVDFSTPKALEEALGLSE------QL-VSGR 146
Query: 185 RTNIPGMKQFRGR 197
R I K ++GR
Sbjct: 147 RVLIKDAKNYKGR 159
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 126 (49.4 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEID 161
A E D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 162 AVQNAL-LLNETELHGRQLKV 181
+V A+ LLN +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 129 (50.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/87 (32%), Positives = 51/87 (58%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y + + ++ F G V + ++ D+ G+PKG+ ++EF +I + A+
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 169 -LNETELHGRQLKVSAKRTNIPGMKQF 194
LN EL GR L+V + + M++F
Sbjct: 78 NLNGYELSGRILRVDSAAGGM-NMEEF 103
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 128 (50.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 39/146 (26%), Positives = 71/146 (48%)
Query: 61 EDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYA 120
ED +++E ++ G E ++ + G Q + S A K E D ++VG + +
Sbjct: 9 EDPTMKMEENDDGEGFGEE---QMSGDNGG-QGEAEGSKIDASKNEEDEGKMFVGGLSWD 64
Query: 121 CTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQL 179
T ++++ +F G V T+ D G+ +GF +V F E ++V+ + E +L+G+ +
Sbjct: 65 TTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQKEHKLNGKVI 124
Query: 180 ---KVSAKRTNIPGMKQF-RGRRPNT 201
K A +T P K F G P+T
Sbjct: 125 DPKKAKAMKTKEPVKKIFVGGLSPDT 150
>UNIPROTKB|F1N209 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:YRFGSSR
GeneTree:ENSGT00690000102191 EMBL:DAAA02000527 IPI:IPI00911874
RefSeq:XP_003581718.1 UniGene:Bt.104085 Ensembl:ENSBTAT00000048660
GeneID:100850231 KEGG:bta:100850231 NextBio:20926533 Uniprot:F1N209
Length = 246
Score = 126 (49.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAV 163
+EE D R+++VGN++ E + + F G + +VTI D+ G+PK F +V F ++V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESV 63
Query: 164 QNAL-LLNETELHGRQLKV 181
A+ LLN L+GR + V
Sbjct: 64 SYAIALLNGIRLYGRPINV 82
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 111 (44.1 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 94 SSSTSATQAEKEEVDS--RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPK 150
S+ + + +E EE S +++YVGN+ Y V++ F G V V ++ DK G+ +
Sbjct: 46 STHPTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRR 105
Query: 151 GFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181
GF +V A Q A+ LNE E R LKV
Sbjct: 106 GFGFVVIAASQA-QTAIDALNEKEYMQRTLKV 136
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 111 (44.1 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 94 SSSTSATQAEKEEVDS--RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPK 150
S+ + + +E EE S +++YVGN+ Y V++ F G V V ++ DK G+ +
Sbjct: 46 STHPTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRR 105
Query: 151 GFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181
GF +V A Q A+ LNE E R LKV
Sbjct: 106 GFGFVVIAASQA-QTAIDALNEKEYMQRTLKV 136
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 126 (49.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEID 161
A E D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 162 AVQNAL-LLNETELHGRQLKV 181
+V A+ LLN +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 126 (49.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEID 161
A E D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 162 AVQNAL-LLNETELHGRQLKV 181
+V A+ LLN +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 128 (50.1 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 41/166 (24%), Positives = 80/166 (48%)
Query: 62 DMKKRLK--EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDY 119
D++K ++ E+ ++ +++ ++ KV++ G +++ SS T K+ I+VG +
Sbjct: 76 DVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKK------IFVGGLSS 129
Query: 120 ACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQ 178
T EE + +F+ G V ++ D +P+GF +V + D+V+ + N EL ++
Sbjct: 130 NTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKR 189
Query: 179 LKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPFVPY--GYG 222
++V KR IP + + N P+VP GYG
Sbjct: 190 VEV--KRA-IP-KEGIQSNNGNAVNIPPSYSSFQATPYVPEQNGYG 231
>TAIR|locus:2172472 [details] [associations]
symbol:AT5G43960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006810
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 InterPro:IPR018222
PROSITE:PS50177 EMBL:AB006703 HOGENOM:HOG000239086 EMBL:AY080755
EMBL:AY114017 IPI:IPI00523493 RefSeq:NP_199209.1 UniGene:At.24860
ProteinModelPortal:Q9FND0 SMR:Q9FND0 IntAct:Q9FND0 STRING:Q9FND0
PaxDb:Q9FND0 PRIDE:Q9FND0 EnsemblPlants:AT5G43960.1 GeneID:834419
KEGG:ath:AT5G43960 TAIR:At5g43960 eggNOG:NOG295220
InParanoid:Q9FND0 OMA:INSVESW PhylomeDB:Q9FND0
ProtClustDB:CLSN2686872 ArrayExpress:Q9FND0 Genevestigator:Q9FND0
Uniprot:Q9FND0
Length = 450
Score = 129 (50.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/167 (26%), Positives = 83/167 (49%)
Query: 65 KRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTS-----ATQAEK----EEVDSRSIYVG 115
K ++I E +R ++ + +Q S+S++ +AE E+ + +S+YV
Sbjct: 262 KSSQDINEWDQPMRTPSPQLAAPLAPIQQSNSSTYVSDYGAEAEDGSGFEDFEFKSVYVR 321
Query: 116 NVDYACTPEEVQQHFQSCGTV--NRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETE 173
N+ + E+++ F++ GT+ + V + T K +A+VEF ++ +V+NA+ +
Sbjct: 322 NLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIY 381
Query: 174 LHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPFVPYG 220
L GRQ+ + +R N G+ RG R G RGR + P +G
Sbjct: 382 LGGRQVYIEERRPNPAGV---RGARRG--GGRGRGGYPTEAPRGRFG 423
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 110 (43.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFVEIDAVQNAL 167
S +++V + ++ T E + Q F G V +V ++ DK +PKGFAYV F + + AL
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 168 L-LNETELHGRQL---KVSAKRTNIPGMK 192
L LN + GR + A + N P K
Sbjct: 80 LELNAQLVDGRVVILDTTKAAKHNPPDTK 108
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 131 (51.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 45/159 (28%), Positives = 73/159 (45%)
Query: 54 NANSKDLEDMKKRLKEIEEEAG---ALREMQAKVEKEMGAVQDSSSTSATQAE--KEEV- 107
N + L +KR + E + G A V+ E G DS A+ K +V
Sbjct: 588 NVEEESLAKRQKRKSQKEVDLGGQSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVY 647
Query: 108 -DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQN 165
D + ++ N+ E++++ F G V+ + IL K G+P+G AY +FV+ + +
Sbjct: 648 RDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAA 707
Query: 166 ALLLNETELHGRQLKVSAKRTNIP-GMKQFRGRRPNTFG 203
A+ N G+ K+S R+N G K+F RR N G
Sbjct: 708 AIAKNRKMFFGK--KISIARSNPKKGKKEFT-RRGNVDG 743
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 117 (46.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 129 (50.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 43/161 (26%), Positives = 75/161 (46%)
Query: 56 NSKDLEDMKKRLKEIEEEAGALREMQAK---VEKEMGAVQDSSSTSATQ-AEKEEVDSRS 111
N+ D + +KE E + + A K+ G ++ + A ++ +S +
Sbjct: 326 NAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDT 385
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALL-L 169
++VGN+ ++ + V + F G V + + TD + G+PKGF YV++ +D + A L
Sbjct: 386 LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNEL 445
Query: 170 NETELHGRQLKV--SAKRTNIPGMKQFRGRRPNTFGFRGRR 208
E+ GR +++ S R N G RG FG RG R
Sbjct: 446 QGAEIDGRPIRLDFSTPRANNGGGGGGRGG----FGGRGGR 482
Score = 124 (48.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 36/153 (23%), Positives = 76/153 (49%)
Query: 62 DMKKRLKEIEEEAGAL----REMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNV 117
D + + +EE+G+ + + + ++ + ++ +++ EE S +++VGN+
Sbjct: 225 DSSESSSDSDEESGSSGSESEDSDKPADSKKRKAEEEPAAASKKSKTEEGASANLFVGNL 284
Query: 118 DYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEI-DAVQNALLLNETELH 175
+ T E + Q F+ G ++ I+T++ G+ +GF YVEF DA + + E E+
Sbjct: 285 SWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKAYEAMKEHEID 343
Query: 176 GRQLKV---SAKRTNIP--GMKQFRGRRPNTFG 203
GR++ + + + N G K+ R +FG
Sbjct: 344 GRKINLDYATGRPANKDQGGFKERAQNRARSFG 376
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 113 (44.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 33/114 (28%), Positives = 55/114 (48%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNAL-LL 169
++VG +++ + ++ HF S G ++ V ++ D+ Q +GF ++ F + A+ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 170 NETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGR-RPFIPGVPFVPYGYG 222
N L GRQ++V G K RG R FG GR R + G YG G
Sbjct: 68 NGESLDGRQIRVDHA-----G-KSARGTRGGGFGAHGRGRSYSRGGGDQGYGSG 115
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 109 (43.4 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTI---LTDKFGQPKGFAYVEFVEIDAVQNALL 168
++VG +D + + F S G + + + +T K + +GFA+VE+VE+D ++AL
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTK--KNRGFAFVEYVEVDDAKHALY 67
Query: 169 -LNETELHGRQLKVSAKRT 186
+N EL+G+++ V+ +T
Sbjct: 68 NMNNFELNGKRIHVNYSKT 86
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 109 (43.4 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTI---LTDKFGQPKGFAYVEFVEIDAVQNALL 168
++VG +D + + F S G + + + +T K + +GFA+VE+VE+D ++AL
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTK--KNRGFAFVEYVEVDDAKHALY 67
Query: 169 -LNETELHGRQLKVSAKRT 186
+N EL+G+++ V+ +T
Sbjct: 68 NMNNFELNGKRIHVNYSKT 86
>SGD|S000006099 [details] [associations]
symbol:CBC2 "Small subunit of the heterodimeric cap binding
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0000339 "RNA cap
binding" evidence=IEA;ISS;IDA] [GO:0000243 "commitment complex"
evidence=IDA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000006099 GO:GO:0048471 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006949 GO:GO:0051028
GO:GO:0000398 GO:GO:0000243 eggNOG:COG0724 GO:GO:0000339
HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846 KO:K12883
GeneTree:ENSGT00390000003197 OrthoDB:EOG4W11PG EMBL:U39665
EMBL:Z73534 EMBL:AY692949 PIR:S65190 RefSeq:NP_015147.1
ProteinModelPortal:Q08920 SMR:Q08920 DIP:DIP-1117N IntAct:Q08920
MINT:MINT-552911 STRING:Q08920 PaxDb:Q08920 EnsemblFungi:YPL178W
GeneID:855925 KEGG:sce:YPL178W CYGD:YPL178w OMA:CGFCFII
NextBio:980654 Genevestigator:Q08920 GermOnline:YPL178W
Uniprot:Q08920
Length = 208
Score = 122 (48.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 31/100 (31%), Positives = 55/100 (55%)
Query: 101 QAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFVE 159
Q +E + S +IYVGN+ + + E++ + F CGT+ R+ + D+F P GF ++ +
Sbjct: 37 QELRESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSC 96
Query: 160 IDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQF-RGR 197
D NAL L++T+L + + + G +QF RG+
Sbjct: 97 PDEALNALKYLSDTKLDEKTITIDLDPGFEDG-RQFGRGK 135
>UNIPROTKB|E7EV40 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010139
HGNC:HGNC:2685 IPI:IPI00927411 ProteinModelPortal:E7EV40 SMR:E7EV40
Ensembl:ENST00000454457 ArrayExpress:E7EV40 Bgee:E7EV40
Uniprot:E7EV40
Length = 204
Score = 121 (47.7 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 28/100 (28%), Positives = 54/100 (54%)
Query: 84 VEKEMGAVQDSSSTSATQAEKE-EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142
+ +E S++TS E ++ +++VG +D E++ F G+V V I+
Sbjct: 51 ISREASTQSSSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 110
Query: 143 TDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
TD+ G KG+ +V F ++D VQ ++ ++ HG++LK+
Sbjct: 111 TDRTGVSKGYGFVSFFNDVD-VQK-IVESQINFHGKKLKL 148
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 108 (43.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALL-L 169
+YVGN++Y ++++ F + GTV ++ D+ G+ +GF +VE Q A+ L
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 170 NETELHGRQLKVSAKR 185
N E+ GR L V+ R
Sbjct: 65 NGKEMDGRNLMVNEAR 80
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 108 (43.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 31/105 (29%), Positives = 53/105 (50%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNAL 167
++ +YVG++ Y T +++++ F GTV V I+TD + G+ KG YV + + + A+
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 168 -LLNETELHGRQLKVSAKRTNIPGMKQFRGR-RPNTFGFRGR-RP 209
L+ L R + VS R + R +P G G+ RP
Sbjct: 62 ETLDGALLRNRVITVSVARPQKQATRPAPRRGKPGPGGRPGKKRP 106
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 108 (43.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 31/105 (29%), Positives = 53/105 (50%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNAL 167
++ +YVG++ Y T +++++ F GTV V I+TD + G+ KG YV + + + A+
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 168 -LLNETELHGRQLKVSAKRTNIPGMKQFRGR-RPNTFGFRGR-RP 209
L+ L R + VS R + R +P G G+ RP
Sbjct: 62 ETLDGALLRNRVITVSVARPQKQATRPAPRRGKPGPGGRPGKKRP 106
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 117 (46.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 117 (46.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 117 (46.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSSGGRGFFRGGR 108
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 117 (46.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 124 (48.7 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 92 QDSSSTSATQAEKEEV---DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FG 147
Q SS +A+ + + + S I+VG + Y+ +++ F G V I+ D+ G
Sbjct: 13 QTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETG 72
Query: 148 QPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS 182
+ +GFA+V F + NA+ L+ +LHGR+++V+
Sbjct: 73 RSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVN 107
>POMBASE|SPBC365.04c [details] [associations]
symbol:SPBC365.04c "RNA-binding protein, involved in
ribosome biogenesis (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISS;IDA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC365.04c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0042254 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000001011 KO:K14789 OMA:GPRFILF OrthoDB:EOG4JHGRC
PIR:T40311 RefSeq:NP_596033.1 ProteinModelPortal:Q9Y7Y3
STRING:Q9Y7Y3 PRIDE:Q9Y7Y3 EnsemblFungi:SPBC365.04c.1
GeneID:2540924 KEGG:spo:SPBC365.04c NextBio:20802039 Uniprot:Q9Y7Y3
Length = 233
Score = 122 (48.0 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 36/130 (27%), Positives = 67/130 (51%)
Query: 58 KDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSS-STSATQAEKEEVDSRSI--YV 114
K+ E KK +I + +++ +K+ +V + T ++ +K + + R + +V
Sbjct: 37 KNEELEKKAADKISRDELPEKQLAQSNDKDKHSVSNPPHKTLKSKRQKGKNNDRKVILFV 96
Query: 115 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFV--EIDAVQNALLLNE 171
GN+ + E +Q HF+ G V V I TDK G+ KG+A+VEF+ + D + AL +
Sbjct: 97 GNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKFHH 156
Query: 172 TELHGRQLKV 181
T R++ +
Sbjct: 157 TIYKERKINI 166
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 128 (50.1 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 32/103 (31%), Positives = 51/103 (49%)
Query: 81 QAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVT 140
Q K E+E + Q +V + IYV NV+ A T EE+++HF CGT+
Sbjct: 277 QKKAEREQLLREQFKEKHEEQKMIAKVSN--IYVKNVNVAVTEEELRKHFSQCGTITSTK 334
Query: 141 ILTDKFGQPKGFAYVEF-VEIDAVQNALLLNETELHGRQLKVS 182
++ D+ G+ KGF +V F +A+ + HG+ L V+
Sbjct: 335 LMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVA 377
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 123 (48.4 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 32/81 (39%), Positives = 47/81 (58%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEID 161
A E D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 162 AVQNAL-LLNETELHGRQLKV 181
+V A+ LLN +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 123 (48.4 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 32/81 (39%), Positives = 47/81 (58%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEID 161
A E D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 162 AVQNAL-LLNETELHGRQLKV 181
+V A+ LLN +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 121 (47.7 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQH--FQSCGTVNRVTILTDKFGQPKGFAYVEFVE 159
A DS +++V N+ Y+ EV+ F+ CG V ++ + G +G+ YVEF E
Sbjct: 696 AHDSSKDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGE 755
Query: 160 IDAVQNALLLNETELHGRQLKVS--AKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 216
+ Q AL L+ + GR + VS ++ P K FR + + FI G+PF
Sbjct: 756 EKSAQQALELDRKIVEGRPMFVSPCVDKSKNPDFKVFR----YSTTLEKHKLFISGLPF 810
Score = 112 (44.5 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 24/87 (27%), Positives = 50/87 (57%)
Query: 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV-EIDAVQN 165
++ +++ + ++CT EE++ ++ GTV + ++T++ G+PKG AYVE+ E A Q
Sbjct: 798 LEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857
Query: 166 ALLLNETELHGRQLKVSAKRTNIPGMK 192
+ ++ + +KV+ +N P K
Sbjct: 858 VMKMDGMTIRENVIKVAI--SNPPQRK 882
Score = 48 (22.0 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 60 LEDMKKRLKEIEEEAGALREMQAKV-EKEMGAVQDSSSTSATQAEKEEVDSRSI 112
LED +++ E + E + K EKE VQ A Q +K + +++
Sbjct: 560 LEDWDLAIQKTETRLARVNEQRMKAAEKEAALVQQEEE-KAEQRKKVRAEKKAL 612
Score = 37 (18.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 55 ANSKDLEDMKK-----RLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVD 108
A K L+ KK + +E E+E E + + + ++S ++ A KEE +
Sbjct: 607 AEKKALKKKKKTRGADKRREDEDEENEWGEEEEEQPSKRRRTENSLASGEASAMKEETE 665
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 116 (45.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 116 (45.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 116 (45.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>UNIPROTKB|G4N872 [details] [associations]
symbol:MGG_06296 "Nuclear cap-binding protein subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CM001234
GO:GO:0000243 GO:GO:0000339 PANTHER:PTHR18847 GO:GO:0005846
KO:K12883 RefSeq:XP_003717292.1 ProteinModelPortal:G4N872
SMR:G4N872 EnsemblFungi:MGG_06296T0 GeneID:2684451
KEGG:mgr:MGG_06296 Uniprot:G4N872
Length = 185
Score = 118 (46.6 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 31/106 (29%), Positives = 54/106 (50%)
Query: 93 DSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKG 151
D + E +S ++YVGN+ + T E+V + F CG + R+ + D+F + P G
Sbjct: 31 DDDAPPPPPQEDPLANSTTLYVGNLSFYTTEEQVYELFSKCGEIKRLVMGLDRFNKTPCG 90
Query: 152 FAYVEF-VEIDAVQNALLLNETELHGRQLKVSAKRTNI-PGMKQFR 195
F +VE+ DA+ + T+L R + RT++ PG ++ R
Sbjct: 91 FCFVEYYTHQDAIDCMKYIGGTKLDERVI-----RTDLDPGFEEGR 131
>ASPGD|ASPL0000043989 [details] [associations]
symbol:AN1517 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:BN001307
Gene3D:3.30.70.330 GO:GO:0003676 ProteinModelPortal:C8VMQ1
EnsemblFungi:CADANIAT00008145 Uniprot:C8VMQ1
Length = 450
Score = 126 (49.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 38/150 (25%), Positives = 70/150 (46%)
Query: 62 DMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYAC 121
D+ + +I E A A A +K+M + Q E ++ ++++GN+ Y
Sbjct: 228 DLDFDISQIRE-AAAQEAWAAAEKKQMTHGEKLDMLRRLQYEPKQ----TVFIGNLFYDV 282
Query: 122 TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180
T E++++ G V V I+ D G KG+ YV+F A + A+ ++ GR++
Sbjct: 283 TAEDLKKQMAKYGVVEGVNIIYDSRGISKGYGYVQFSSNAAARRAIDAMHMRIFEGRRVT 342
Query: 181 VSAKRTNIPGMKQFRGRRPNTFGFRGRRPF 210
+ +TNI F+ ++P + G PF
Sbjct: 343 LYYAQTNITN--SFKNKKPTNTLYIGNVPF 370
>UNIPROTKB|D4A0P8 [details] [associations]
symbol:Dazl "Protein Dazl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063480 CTD:1618 EMBL:CH473987
IPI:IPI00870381 RefSeq:NP_001102884.1 UniGene:Rn.136288
Ensembl:ENSRNOT00000066517 GeneID:680486 KEGG:rno:680486
NextBio:718813 Uniprot:D4A0P8
Length = 281
Score = 123 (48.4 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 84 VEKEMGAVQDSSSTSATQAEKE-EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142
V +E S++TS E ++ +++VG +D E++ F G+V V I+
Sbjct: 13 VSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72
Query: 143 TDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
TD+ G KG+ +V F ++D VQ ++ ++ HG++LK+
Sbjct: 73 TDRTGVSKGYGFVSFYNDVD-VQK-IVESQINFHGKKLKL 110
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 106 (42.4 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKV 181
++ +N + GRQ++V
Sbjct: 64 MMAMNGKSVDGRQIRV 79
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 125 (49.1 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 35/115 (30%), Positives = 59/115 (51%)
Query: 68 KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQ 127
+E++ + RE Q +V G + S S+ K ++ I+VG + T EE +
Sbjct: 73 REVDVKRAMSREEQ-QVSGRTGNLNTSRSSGGDAYNK----TKKIFVGGLPPTLTDEEFR 127
Query: 128 QHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKV 181
Q+F+ G V V I+ D+ +P+GF +V F DAV + L +L G+Q++V
Sbjct: 128 QYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEV 182
>UNIPROTKB|I3LPX5 [details] [associations]
symbol:LOC100625706 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0045836 "positive regulation of
meiosis" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YVIPPAY
EMBL:FP312724 Ensembl:ENSSSCT00000022390 Uniprot:I3LPX5
Length = 298
Score = 123 (48.4 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 84 VEKEMGAVQDSSSTSATQAEKE-EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142
+ +E S++TS E ++ +I+VG +D E++ F G+V V I+
Sbjct: 13 ISREASTQSSSAATSQGYVLPEGKIMPNTIFVGGIDVRMDETEIRSFFARYGSVKEVKII 72
Query: 143 TDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
TD+ G KG+ +V F ++D VQ ++ ++ HG++LK+
Sbjct: 73 TDRTGVSKGYGFVSFYNDVD-VQK-IVESQINFHGKKLKL 110
>MGI|MGI:1342328 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=ISO;IDA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0044464 "cell part" evidence=IDA] [GO:0045836 "positive
regulation of meiosis" evidence=IMP] [GO:0045948 "positive
regulation of translational initiation" evidence=ISO;IDA]
[GO:0048477 "oogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1342328 GO:GO:0007275 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:X95724 EMBL:U38690 EMBL:U46694 EMBL:AK014854
EMBL:AK033183 IPI:IPI00262067 RefSeq:NP_034151.3 UniGene:Mm.280641
PDB:2XS2 PDB:2XS5 PDB:2XS7 PDB:2XSF PDBsum:2XS2 PDBsum:2XS5
PDBsum:2XS7 PDBsum:2XSF ProteinModelPortal:Q64368 SMR:Q64368
IntAct:Q64368 MINT:MINT-133503 STRING:Q64368 PhosphoSite:Q64368
PaxDb:Q64368 PRIDE:Q64368 Ensembl:ENSMUST00000010736 GeneID:13164
KEGG:mmu:13164 UCSC:uc008cyv.2 InParanoid:Q64368
EvolutionaryTrace:Q64368 NextBio:283242 Bgee:Q64368 CleanEx:MM_DAZL
Genevestigator:Q64368 GermOnline:ENSMUSG00000010592 Uniprot:Q64368
Length = 298
Score = 123 (48.4 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 84 VEKEMGAVQDSSSTSATQAEKE-EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142
V +E S++TS E ++ +++VG +D E++ F G+V V I+
Sbjct: 13 VSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72
Query: 143 TDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
TD+ G KG+ +V F ++D VQ ++ ++ HG++LK+
Sbjct: 73 TDRTGVSKGYGFVSFYNDVD-VQK-IVESQINFHGKKLKL 110
>RGD|1591714 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=IEA;ISO] [GO:0044464 "cell part" evidence=ISO] [GO:0045836
"positive regulation of meiosis" evidence=IEA;ISO] [GO:0045948
"positive regulation of translational initiation" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008494 GO:GO:0003730 GO:GO:0007281
GO:GO:0005844 GO:GO:0045836 GO:GO:0045948 OrthoDB:EOG4T783S
EMBL:CH473987 UniGene:Rn.136288 IPI:IPI00765442
Ensembl:ENSRNOT00000039512 UCSC:RGD:1591714 Uniprot:D4A3C6
Length = 298
Score = 123 (48.4 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 84 VEKEMGAVQDSSSTSATQAEKE-EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142
V +E S++TS E ++ +++VG +D E++ F G+V V I+
Sbjct: 13 VSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72
Query: 143 TDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
TD+ G KG+ +V F ++D VQ ++ ++ HG++LK+
Sbjct: 73 TDRTGVSKGYGFVSFYNDVD-VQK-IVESQINFHGKKLKL 110
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 125 (49.1 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 99 ATQAEKEEV-DS--RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAY 154
A +A+++ + D RS++VGN+ Y T E++++ F G V + ++ D+ G+PKGF +
Sbjct: 2 ADKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGF 61
Query: 155 VEFVEIDAVQNALL-LNETELHGRQLKV 181
E+ + + +A+ LN E+ GR L+V
Sbjct: 62 CEYKDQETALSAMRNLNGYEIGGRTLRV 89
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 117 (46.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 114 (45.2 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 29/106 (27%), Positives = 56/106 (52%)
Query: 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQN 165
+D + VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++
Sbjct: 3 LDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 ALL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
A++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGR 108
>SGD|S000005119 [details] [associations]
symbol:NOP13 "Nucleolar protein found in preribosomal
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0030684
"preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005119 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723 eggNOG:COG0724
GO:GO:0030684 EMBL:Z71451 PIR:S63130 RefSeq:NP_014224.2
ProteinModelPortal:P53883 SMR:P53883 DIP:DIP-4331N IntAct:P53883
MINT:MINT-479067 STRING:P53883 PaxDb:P53883 PeptideAtlas:P53883
EnsemblFungi:YNL175C GeneID:855547 KEGG:sce:YNL175C CYGD:YNL175c
HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF NextBio:979619
Genevestigator:P53883 GermOnline:YNL175C Uniprot:P53883
Length = 403
Score = 124 (48.7 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 35/126 (27%), Positives = 62/126 (49%)
Query: 58 KDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNV 117
K++E MK L+ E R M K + D A + SR ++VGN+
Sbjct: 191 KNVEQMKAVLELSESHLNG-RNMLIKDSENYSGRPDKDDLVAMS---KNPPSRILFVGNL 246
Query: 118 DYACTPEEVQQHFQSCGTVNRVTILT-DKFGQPKGFAYVEFVEIDAVQNALLLNET-ELH 175
+ T + +++HFQ CG + ++ + T + G+ KGFA+++F + NAL ++
Sbjct: 247 SFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNALKDKSCRKIA 306
Query: 176 GRQLKV 181
GR L++
Sbjct: 307 GRPLRM 312
>UNIPROTKB|A3DUJ0 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like transcript variant
1" species:9913 "Bos taurus" [GO:0045948 "positive regulation of
translational initiation" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:DAAA02003725 EMBL:DQ408764 EMBL:DQ408765
EMBL:EF501823 IPI:IPI00706010 RefSeq:NP_001075194.1
UniGene:Bt.63695 STRING:A3DUJ0 Ensembl:ENSBTAT00000048665
GeneID:530116 KEGG:bta:530116 InParanoid:A3DUJ0 NextBio:20875183
Uniprot:A3DUJ0
Length = 295
Score = 122 (48.0 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 28/100 (28%), Positives = 54/100 (54%)
Query: 84 VEKEMGAVQDSSSTSATQAEKE-EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142
+ +E S++TS E ++ +++VG +D E++ F G+V V I+
Sbjct: 13 ISREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72
Query: 143 TDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
TD+ G KG+ +V F ++D VQ ++ ++ HG++LK+
Sbjct: 73 TDRTGVSKGYGFVSFYNDVD-VQK-IVESQINFHGKKLKL 110
>UNIPROTKB|J9NTC5 [details] [associations]
symbol:DAZL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 CTD:1618 OMA:YVIPPAY EMBL:AAEX03013583
RefSeq:XP_534251.3 Ensembl:ENSCAFT00000046462 GeneID:477055
KEGG:cfa:477055 Uniprot:J9NTC5
Length = 295
Score = 122 (48.0 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 28/100 (28%), Positives = 54/100 (54%)
Query: 84 VEKEMGAVQDSSSTSATQAEKE-EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142
+ +E S++TS E ++ +++VG +D E++ F G+V V I+
Sbjct: 13 ISREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72
Query: 143 TDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
TD+ G KG+ +V F ++D VQ ++ ++ HG++LK+
Sbjct: 73 TDRTGVSKGYGFVSFYNDVD-VQK-IVESQINFHGKKLKL 110
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 112 (44.5 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNAL-LL 169
++VG +++ ++ HF S G ++ V ++ D+ Q +GF ++ F + NA+ +
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 170 NETELHGRQLKV-----SAKRTN---IPGMKQFRG--RRPNTFGF-RGRRPFIPGVPFVP 218
N L GRQ++V SA+ + G ++ RG R G+ GR PG
Sbjct: 68 NGESLDGRQIRVDHAGKSARGSRGGAFGGYERGRGYPRGGGDQGYGSGRYDNRPGAYGFG 127
Query: 219 YGYG 222
YGYG
Sbjct: 128 YGYG 131
>UNIPROTKB|Q92904 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0007281 "germ cell development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 EMBL:CH471055 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0003730
GO:GO:0007281 GO:GO:0005844 GO:GO:0045836 eggNOG:NOG260394
GO:GO:0045948 OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573
HOGENOM:HOG000246400 EMBL:U65918 EMBL:U66726 EMBL:U66078
EMBL:U77476 EMBL:U77467 EMBL:U77468 EMBL:U77469 EMBL:U77470
EMBL:U77471 EMBL:U77472 EMBL:U77473 EMBL:U77474 EMBL:U77475
EMBL:AK303026 EMBL:BX648638 EMBL:AC010139 EMBL:BC027595
IPI:IPI00871660 RefSeq:NP_001177740.1 RefSeq:NP_001342.2
UniGene:Hs.131179 ProteinModelPortal:Q92904 SMR:Q92904
IntAct:Q92904 STRING:Q92904 PhosphoSite:Q92904 DMDM:27805453
PRIDE:Q92904 DNASU:1618 Ensembl:ENST00000250863
Ensembl:ENST00000399444 GeneID:1618 KEGG:hsa:1618 UCSC:uc003cbb.3
GeneCards:GC03M016603 HGNC:HGNC:2685 HPA:HPA019593 HPA:HPA019777
MIM:601486 neXtProt:NX_Q92904 PharmGKB:PA27155 OMA:YVIPPAY
GenomeRNAi:1618 NextBio:6646 ArrayExpress:Q92904 Bgee:Q92904
CleanEx:HS_DAZL Genevestigator:Q92904 GermOnline:ENSG00000092345
Uniprot:Q92904
Length = 295
Score = 121 (47.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/100 (28%), Positives = 54/100 (54%)
Query: 84 VEKEMGAVQDSSSTSATQAEKE-EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142
+ +E S++TS E ++ +++VG +D E++ F G+V V I+
Sbjct: 13 ISREASTQSSSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72
Query: 143 TDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
TD+ G KG+ +V F ++D VQ ++ ++ HG++LK+
Sbjct: 73 TDRTGVSKGYGFVSFFNDVD-VQK-IVESQINFHGKKLKL 110
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 114 (45.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/106 (27%), Positives = 56/106 (52%)
Query: 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQN 165
+D + VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++
Sbjct: 3 LDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 ALL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
A++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGR 108
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 45/161 (27%), Positives = 74/161 (45%)
Query: 61 EDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYA 120
ED K L++ E E+G + +KE + + D+ +++V N+ Y
Sbjct: 542 ED-KDPLRQREHESGPEKPDHPTNQKEKPSTSRKDVPKVLHDSSK--DNITVFVSNLSYN 598
Query: 121 CTPEEVQ--QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQ 178
T EV+ + F+SCG V++V + G +G+ YVEF + + AL ++ + GR
Sbjct: 599 MTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALGMDRKVVEGRP 658
Query: 179 LKVSA---KRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 216
+ VS K N P K FR + + FI G+PF
Sbjct: 659 MFVSPCVDKNKN-PDFKVFR----YSTTLEKHKLFISGLPF 694
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV-EIDAVQN 165
++ +++ + ++CT EE++ ++ G V + ++T++ G+PKG AYVE+ E A Q
Sbjct: 682 LEKHKLFISGLPFSCTKEELEDICKAHGNVKDIRLVTNRAGKPKGLAYVEYENEAQASQA 741
Query: 166 ALLLNETELHGRQLKVS 182
L ++ + +KV+
Sbjct: 742 VLKMDGLTIKEHVIKVA 758
Score = 46 (21.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 60 LEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS 111
LED +++ E + E +AK ++ A+ A Q ++ + ++
Sbjct: 465 LEDWDAAVQKTENRLARVNEQRAKAAEKEAALARQEEEKAEQRKQSRAEKKA 516
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 122 (48.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 34/132 (25%), Positives = 67/132 (50%)
Query: 80 MQAKVEKEMGAVQDSS-STSATQAEKEE--VDSRSIYVGNVDYACTPEEVQQHFQSCGTV 136
M A+ G V D + S ++EK+ V+ + ++VG + ++++F+ G +
Sbjct: 79 MAARPHSIDGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYGKI 138
Query: 137 NRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFR 195
+ + I+TD+ G+ +GF +V F + D V +L ++G + +V K + MK+ +
Sbjct: 139 DAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVG-KALSRQEMKEIQ 197
Query: 196 G---RRPNTFGF 204
G R+ FGF
Sbjct: 198 GPRSRKGGPFGF 209
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 117 (46.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>ZFIN|ZDB-GENE-040724-10 [details] [associations]
symbol:sart3 "squamous cell carcinoma antigen
recognised by T cells 3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IMP] [GO:0031017 "exocrine pancreas
development" evidence=IMP] [GO:0030098 "lymphocyte differentiation"
evidence=IMP] [GO:0048538 "thymus development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
ZFIN:ZDB-GENE-040724-10 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0048538 GO:GO:0000245
GO:GO:0031017 GO:GO:0030098 HOGENOM:HOG000063708 HOVERGEN:HBG053888
EMBL:BC159116 IPI:IPI00483754 UniGene:Dr.78990
ProteinModelPortal:B0JZB9 SMR:B0JZB9 STRING:B0JZB9
ArrayExpress:B0JZB9 Uniprot:B0JZB9
Length = 952
Score = 121 (47.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 30/100 (30%), Positives = 51/100 (51%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV-EIDA 162
K ++ I++ + Y+ T E ++ + GT+ + I+T++ G+ KG AYVEF E A
Sbjct: 780 KTSMEKHKIFISGLPYSATKETLEDLCKEHGTIRAIRIVTNRSGKSKGLAYVEFEDEAQA 839
Query: 163 VQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTF 202
Q L ++ T L L V+ +N PG + P+ F
Sbjct: 840 SQAVLKMDGTMLENFTLSVAI--SNPPGRRMKDEAAPSRF 877
Score = 118 (46.6 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 103 EKEEVDSRSIYVGNVDYACT-PE-EVQQHFQSCGTVNRVT-ILTDKFGQPKGFAYVEFVE 159
+++ D ++V N+ + PE +++ FQ CGT+ +V + T K G +G+ YV+F +
Sbjct: 682 KEQRKDENCVFVSNLTFNMEDPEGKLRTLFQGCGTIQQVRPVFTAK-GTFRGYCYVQFED 740
Query: 160 IDAVQNALLLNETELHGRQLKVSA---KRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 216
AV AL ++ E+ GR + VS K N P K F+ + + FI G+P+
Sbjct: 741 RLAVPEALKMDRQEVDGRPMYVSPCVDKNKN-PDFKVFKYKT----SMEKHKIFISGLPY 795
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 60 LEDMKKRLKEIEEEAGALREMQAKV-EKE-MGAVQDSSSTSATQAEKEEVDSRS 111
LED +++ E + + E +A+V EKE + A Q+ A Q K + D ++
Sbjct: 540 LEDWDAAVQKTETKLNRVCEQRARVAEKEALHARQEEEK--AEQRRKVKADKKA 591
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 67 LKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSR 110
L E G+L + A V+K + A AEKE + +R
Sbjct: 530 LLNFERVEGSLEDWDAAVQKTETKLNRVCEQRARVAEKEALHAR 573
Score = 37 (18.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 64 KKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSR 110
++R + E+EA R+ + K E+ D + Q D R
Sbjct: 559 EQRARVAEKEALHARQEEEKAEQRRKVKADKKAQKKGQKANRTGDKR 605
Score = 35 (17.4 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 55 ANSKDLEDMKKRLKEIEEEAG----ALREMQAKVE 85
A S+ LE +K+ ++E E+G L ++ A++E
Sbjct: 429 AFSRSLEYLKQDVEERFSESGDLSCTLMQIWARIE 463
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 103 (41.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 19/86 (22%), Positives = 45/86 (52%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVE 156
S +++ KE R +++G + + T E ++ HF+ GT+ ++ D + +GF +V
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 157 FVEIDAVQNALLLNETELHGRQLKVS 182
+ ++ V A+ ++ GR ++ +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEAT 87
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 103 (41.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNAL 167
++++YVGN+ + E++Q+ G V ++ +K G+ +G+ ++E + DA +
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMT 61
Query: 168 LLNETELHGRQLKVSAKR 185
LN E+ GRQL VS R
Sbjct: 62 GLNGKEVEGRQLVVSEAR 79
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 103 (41.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALLLN 170
IYVGN+ Y ++ Q+F G + V I+ + + G+ KG+A+V +V AL +
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAH 105
Query: 171 ETELHGRQLKV 181
+L GR L V
Sbjct: 106 GKDLQGRSLVV 116
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 103 (41.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALLLN 170
IYVGN+ Y ++ Q+F G + V I+ + + G+ KG+A+V +V AL +
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAH 105
Query: 171 ETELHGRQLKV 181
+L GR L V
Sbjct: 106 GKDLQGRSLVV 116
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 103 (41.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNAL 167
++++YVGN+ + E++Q+ G V ++ +K G+ +G+ ++E + DA +
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMT 61
Query: 168 LLNETELHGRQLKVSAKR 185
LN E+ GRQL VS R
Sbjct: 62 GLNGKEVEGRQLVVSEAR 79
>UNIPROTKB|E1BWJ0 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 OMA:SQAVMKM
EMBL:AADN02034959 EMBL:AADN02034960 EMBL:AADN02034961
EMBL:AADN02034962 EMBL:AADN02034963 IPI:IPI00823214
ProteinModelPortal:E1BWJ0 Ensembl:ENSGALT00000038892
ArrayExpress:E1BWJ0 Uniprot:E1BWJ0
Length = 731
Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 36/122 (29%), Positives = 61/122 (50%)
Query: 64 KKRLKEIEEEA-GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACT 122
KK K+ ++ G R+ E E G Q+ Q E + D+ +++V N+ Y T
Sbjct: 592 KKASKKAKKNRIGEKRKADDDDEGEWG--QEEEEDPLRQREHDSKDNITVFVSNLSYNMT 649
Query: 123 PEEVQ--QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLK 180
EV+ + F+SCG V++V + G +G+ YVEF + + AL ++ + GR +
Sbjct: 650 DPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALGMDRKVVEGRPMF 709
Query: 181 VS 182
VS
Sbjct: 710 VS 711
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 117 (46.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/105 (25%), Positives = 53/105 (50%)
Query: 93 DSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKG 151
+ SS + + A + D R ++VG + + T +E++ HF G + + + TD + G+ +G
Sbjct: 39 NGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRG 98
Query: 152 FAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRG 196
FA++ F +A+ +E ++ + KV K+ K F G
Sbjct: 99 FAFIVFTNTEAIDKVSAADEHIINSK--KVDPKKAKARHGKIFVG 141
>UNIPROTKB|F1PL96 [details] [associations]
symbol:DAZL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:AAEX03013583
Ensembl:ENSCAFT00000009460 Uniprot:F1PL96
Length = 413
Score = 122 (48.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/100 (28%), Positives = 54/100 (54%)
Query: 84 VEKEMGAVQDSSSTSATQAEKE-EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142
+ +E S++TS E ++ +++VG +D E++ F G+V V I+
Sbjct: 14 ISREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 73
Query: 143 TDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
TD+ G KG+ +V F ++D VQ ++ ++ HG++LK+
Sbjct: 74 TDRTGVSKGYGFVSFYNDVD-VQK-IVESQINFHGKKLKL 111
>WB|WBGene00009141 [details] [associations]
symbol:ncbp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0040022 "feminization of
hermaphroditic germ-line" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0005635
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0016246
GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
GO:GO:0040022 eggNOG:COG0724 GO:GO:0006370 HOGENOM:HOG000217589
PANTHER:PTHR18847 HSSP:P52298 GeneTree:ENSGT00390000003197
EMBL:Z78419 PIR:T21382 RefSeq:NP_001250552.1 RefSeq:NP_001250553.1
RefSeq:NP_001250554.1 ProteinModelPortal:Q93594 STRING:Q93594
PaxDb:Q93594 GeneID:184953 KEGG:cel:CELE_F26A3.2 UCSC:F26A3.2
CTD:184953 WormBase:F26A3.2a WormBase:F26A3.2b WormBase:F26A3.2c
InParanoid:Q93594 OMA:YRTDYDV NextBio:926534 Uniprot:Q93594
Length = 158
Score = 110 (43.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 33/130 (25%), Positives = 61/130 (46%)
Query: 86 KEMGAVQDSSSTSATQAEKEEV-DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 144
KE+ A +D + ++ + S ++YVGN+ Y ++V + F G V RV + D
Sbjct: 12 KEISAYRDQRYQGTVRDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLD 71
Query: 145 KFGQ-PKGFAYVEFVEIDAVQNALL-LNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTF 202
+F + P GF +VE+ + + AL ++ T + R ++ I G + RG+
Sbjct: 72 RFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIRADWDAGFIEGRQYGRGKHGGQV 131
Query: 203 GFRGRRPFIP 212
R+ + P
Sbjct: 132 RDEYRKDYDP 141
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 120 (47.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 28/94 (29%), Positives = 48/94 (51%)
Query: 94 SSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 153
SSS+SA + +EE+ + NV + TPE+++ F+ G+V + + K + +G
Sbjct: 78 SSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLV 137
Query: 154 YVEFVEIDAVQNALL-LNETELHGRQLKVSAKRT 186
++E + AL L E GR+LKV +T
Sbjct: 138 FIEMASPEEAATALKSLESCEYEGRRLKVDYAKT 171
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 117 (46.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 32/102 (31%), Positives = 54/102 (52%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFVEIDAVQNAL-L 168
S+ V N+ Y +PE +++ F+ G V V I D++ + +GFA+V F + ++A+
Sbjct: 15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 169 LNETELHGRQLKVSAKRTNIPGMKQF--RGRRPNTFGFRGRR 208
++ L GR+L+V R P + RG P +G GRR
Sbjct: 75 MDGALLDGRELRVQMARYGRPPDAHYSRRGAPPRRYGGYGRR 116
>UNIPROTKB|E2QXZ2 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00550000074656
InterPro:IPR008669 Pfam:PF05391 OMA:SQAVMKM EMBL:AAEX03014754
Ensembl:ENSCAFT00000018071 Uniprot:E2QXZ2
Length = 1082
Score = 122 (48.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 33/113 (29%), Positives = 55/113 (48%)
Query: 108 DSRSIYVGNVDYACTPEEVQQH--FQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQN 165
DS +++V N+ Y+ EV+ F++CG V + + G +G+ YVEF E +
Sbjct: 821 DSITVFVSNLPYSMDEPEVKLRPLFEACGEVTEIRPIFSNRGDFRGYCYVEFKEEKSALQ 880
Query: 166 ALLLNETELHGRQLKVS--AKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 216
AL L+ + GR + VS ++ P K FR + + F+ G+PF
Sbjct: 881 ALELDRKTVEGRPMFVSPCVDKSKHPDFKVFR----YSTALEKHKLFVSGLPF 929
Score = 118 (46.6 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 26/87 (29%), Positives = 51/87 (58%)
Query: 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV-EIDAVQN 165
++ ++V + ++CT EE+++ ++ GTV + ++T++ G+PKG AYVE+ E A Q
Sbjct: 917 LEKHKLFVSGLPFSCTKEELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENESQASQA 976
Query: 166 ALLLNETELHGRQLKVSAKRTNIPGMK 192
L ++ + +KV+ +N P K
Sbjct: 977 VLKMDGMTIKENVIKVAI--SNPPQRK 1001
Score = 42 (19.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 60 LEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSI 112
LED +++ E + E + K ++ A+ A Q ++ + +++
Sbjct: 678 LEDWDIAVQKTETRLARVNEQRIKAAEKEAALAQQEEEKAEQRKRARAEKKAL 730
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 124 (48.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 94 SSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQP-KGF 152
+SS+S EE D R+++V + +++ F GTV V ++TDK + KG
Sbjct: 250 TSSSSTLPEPDEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGV 309
Query: 153 AYVEFVEIDAVQNALLLNETELHGRQLKV 181
YVEF + + V A+ L+ + L G+Q+ V
Sbjct: 310 GYVEFSQKEMVDKAIALSGSVLDGQQILV 338
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 33/116 (28%), Positives = 61/116 (52%)
Query: 93 DSSSTSATQA---EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILT-DKFGQ 148
+ S + ATQ+ SR ++VGN+ + T + +++HF+ CG + ++ + T G+
Sbjct: 195 EQSKSDATQSGGINSSNPPSRILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGK 254
Query: 149 PKGFAYVEFVEIDAVQNALLLNETE-LHGRQLKVSAKRTNIPGMKQFRGRRPNTFG 203
KGFA+++F + + AL T+ L R+L++ K+ R +R N FG
Sbjct: 255 CKGFAFIDFKDEEGATTALKSKLTKMLINRKLRMEYGEDR---SKR-RPKRANDFG 306
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 33/116 (28%), Positives = 61/116 (52%)
Query: 93 DSSSTSATQA---EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILT-DKFGQ 148
+ S + ATQ+ SR ++VGN+ + T + +++HF+ CG + ++ + T G+
Sbjct: 195 EQSKSDATQSGGINSSNPPSRILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGK 254
Query: 149 PKGFAYVEFVEIDAVQNALLLNETE-LHGRQLKVSAKRTNIPGMKQFRGRRPNTFG 203
KGFA+++F + + AL T+ L R+L++ K+ R +R N FG
Sbjct: 255 CKGFAFIDFKDEEGATTALKSKLTKMLINRKLRMEYGEDR---SKR-RPKRANDFG 306
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 122 (48.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 95 SSTSATQAEKEEVDS--RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKG 151
++ +A A VD RS++VGN+ Y T E+++ F G V ++ D+ G+PKG
Sbjct: 7 AAAAAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKG 66
Query: 152 FAYVEFVEIDAVQNALL-LNETELHGRQLKV 181
+ + E+ + + +A+ LN E GR L+V
Sbjct: 67 YGFCEYQDQETALSAMRNLNGREFSGRALRV 97
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 118 (46.6 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 40/136 (29%), Positives = 62/136 (45%)
Query: 72 EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQ 131
+ G +E E GA SS SA +A + + R ++VG +D++ T E ++ +F
Sbjct: 20 QPTGGRKERLGGPEGTSGA-PSHSSVSARKAAQAAL--RKLFVGGLDWSTTQETLRSYFS 76
Query: 132 SCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQL--KVSAKRT-N 187
G V I+ DK Q +GF +V+F + + V L L GR + K R+ N
Sbjct: 77 QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKQKGPRSDN 136
Query: 188 IPGMKQFRGRRPNTFG 203
K F G P+ G
Sbjct: 137 SKSNKIFVGGIPHNCG 152
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 33/125 (26%), Positives = 62/125 (49%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNAL 167
S I+VG + + C E++++F+ G V V ++ D Q P+GF ++ F + +V A+
Sbjct: 139 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 198
Query: 168 LLNETELHGRQLKVS--------AKRTNIPGMKQFRGRR-PNTF-GFRGRRPFIPGVPFV 217
++ ++ G++++V ++ PG Q+ R PN G+ G+ P P
Sbjct: 199 NMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPP-----PTW 253
Query: 218 PYGYG 222
GYG
Sbjct: 254 QQGYG 258
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 114 (45.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/106 (27%), Positives = 56/106 (52%)
Query: 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQN 165
+D + VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++
Sbjct: 3 LDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 ALL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
A++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGR 108
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 101 (40.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/100 (29%), Positives = 51/100 (51%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFVEIDAVQNAL-L 168
S+ V N+ Y +P+ +++ F+ G V V I D++ + +GFA+V F + ++A+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 169 LNETELHGRQLKVSAKRTNIPGMKQF--RGRRPNTFGFRG 206
++ L GR+L+V R P RG P +G G
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGG 114
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 118 (46.6 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEID 161
++E + S+Y+GN+ Y T + FQ + V I D+ G P+GFA+ +F +++
Sbjct: 162 QEERTPTSSLYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVE 221
Query: 162 AVQNAL-LLNETELHGRQLKVSAKRTNIP 189
+ A+ + EL GR L+V +P
Sbjct: 222 SATKAVEKVKLMELMGRTLRVDYSTPRVP 250
Score = 110 (43.8 bits), Expect = 0.00025, P = 0.00025
Identities = 34/132 (25%), Positives = 61/132 (46%)
Query: 84 VEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILT 143
V + + V+++S +S + E+ I+V N+ + T E + + F G V +
Sbjct: 51 VSRTLANVEENSGSSLPRQEQPN----GIFVRNLVFDATNEHLAEAFSQYGNVVDAKVAR 106
Query: 144 DKFGQPKGFAYVEFVEIDAVQNALL-LNETELHGRQLKVSAK-RTNIPGMKQFRG---RR 198
D G KGF ++ F +A Q A N T HGR++ V+ + + + PG + R
Sbjct: 107 DARGLSKGFGFIYFETPEAAQKACEEANNTFWHGRRINVAPRIKASKPGNRDAMNQEERT 166
Query: 199 PNTFGFRGRRPF 210
P + + G P+
Sbjct: 167 PTSSLYIGNIPY 178
>UNIPROTKB|F1NGK7 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE EMBL:AADN02041798
EMBL:AADN02041799 IPI:IPI00586092 ProteinModelPortal:F1NGK7
Ensembl:ENSGALT00000011352 Uniprot:F1NGK7
Length = 279
Score = 118 (46.6 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQN 165
E D R+++VGN+D T E + + F G V +V I DK G+ K FA+V F ++V
Sbjct: 7 EAD-RTLFVGNLDPKVTEELIFELFHQAGPVIKVKIPKDKDGKQKQFAFVSFKHEESVPY 65
Query: 166 AL-LLNETELHGRQLKV 181
+ LLN +L+GR + +
Sbjct: 66 GMNLLNGIKLYGRPINI 82
>UNIPROTKB|E2RBE5 [details] [associations]
symbol:NCBP2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
EMBL:AAEX03026753 Ensembl:ENSCAFT00000028568 Uniprot:E2RBE5
Length = 163
Score = 110 (43.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 87 EMGAVQDSS-STSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 145
E+ QD + EK DS ++YVGN+ + T E++ + F CG V V + DK
Sbjct: 17 ELSEYQDQQFGGDNDEQEKLLKDSSTLYVGNLSFYTTEEQIYELFSRCGDVKNVFMGLDK 76
Query: 146 FGQPK-GFAYVEFVEIDAVQNALL-LNET 172
+ GF ++E+ +NA+L LN T
Sbjct: 77 IKKTACGFCFIEYHNRFDAENAMLFLNGT 105
>UNIPROTKB|J9NU83 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 EMBL:AAEX03002684
Ensembl:ENSCAFT00000043962 Uniprot:J9NU83
Length = 344
Score = 119 (46.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 36/114 (31%), Positives = 55/114 (48%)
Query: 57 SKDLEDMKKRLKEIEEEAGAL----REMQA-KVEKEMGA-VQDSSSTSATQA-EKEEVDS 109
SK L +K+++ ++ A E A K K GA + D A E D
Sbjct: 224 SKKLAAIKRKIHPDQKYINAYVVFKDESSATKALKRNGAQIADGFRIRVDLASETSSRDK 283
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDA 162
RS++VGN+ Y V++HF CG++ V I+ D+ G +GF YV F E+ +
Sbjct: 284 RSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFEEVSS 337
>UNIPROTKB|A2SW84 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:119488 "Siniperca chuatsi" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847
GO:GO:0046833 GO:GO:0006408 EMBL:DQ359156 ProteinModelPortal:A2SW84
SMR:A2SW84 Uniprot:A2SW84
Length = 165
Score = 110 (43.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPK-GFAYVEFVEID 161
EK S ++YVGN+ + T E+V + F G V R+ I DK + GF +VE+
Sbjct: 32 EKLLKQSHTLYVGNLSFYTTEEQVHELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRA 91
Query: 162 AVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+NA+ +N T L R ++ G + RG+
Sbjct: 92 GAENAMRFINGTRLDDRIIRADWDAGFKEGRQYGRGK 128
>UNIPROTKB|E2RSQ3 [details] [associations]
symbol:SLIRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:81892 GeneTree:ENSGT00390000008624 OMA:SNELREH
EMBL:AAEX03005881 RefSeq:XP_547932.2 ProteinModelPortal:E2RSQ3
Ensembl:ENSCAFT00000027289 GeneID:490810 KEGG:cfa:490810
NextBio:20863760 Uniprot:E2RSQ3
Length = 111
Score = 100 (40.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 94 SSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGF 152
+S+ A + + R +V + + E+++HF G V + T+ DK G +G
Sbjct: 3 ASAARGAVALRTRIGRRVAFVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHRGM 62
Query: 153 AYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNI 188
+V F + +QNAL + + G +L + A+R +
Sbjct: 63 GWVHFSSEEDLQNALQQEKHIIDGVKLHIQARRPKV 98
>UNIPROTKB|F1N0I9 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 EMBL:DAAA02045494 IPI:IPI00842907
Ensembl:ENSBTAT00000045157 OMA:PYSMSEP Uniprot:F1N0I9
Length = 655
Score = 122 (48.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 36/133 (27%), Positives = 66/133 (49%)
Query: 69 EIEEEAGALREMQAKVEKEMGAVQ------DSSSTSATQAEKEE--VDSRSIYVGNVDYA 120
E EEA AL+ +Q + G D S + + ++ ++V + ++
Sbjct: 450 EFREEAAALQALQLDRQSVEGRPMFVSPCVDKSKNPDFKVFRYSTALEKHKLFVSGLPFS 509
Query: 121 CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQL 179
CT EE+++ ++ GTV + ++T++ G+PKG AYVE+ E A Q L ++ + +
Sbjct: 510 CTKEELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENESQASQAVLKMDGMTIRENVI 569
Query: 180 KVSAKRTNIPGMK 192
KV+ +N P K
Sbjct: 570 KVAI--SNPPQRK 580
Score = 108 (43.1 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 33/113 (29%), Positives = 53/113 (46%)
Query: 108 DSRSIYVGNVDYAC-TPEE-VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQN 165
D +++V N+ Y P ++ F++CG V V + G +G+ YVEF E A
Sbjct: 400 DGVTVFVSNLPYGLGEPAATLRPLFEACGDVVEVRPIFSNRGDFRGYCYVEFREEAAALQ 459
Query: 166 ALLLNETELHGRQLKVS--AKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 216
AL L+ + GR + VS ++ P K FR + + F+ G+PF
Sbjct: 460 ALQLDRQSVEGRPMFVSPCVDKSKNPDFKVFR----YSTALEKHKLFVSGLPF 508
Score = 43 (20.2 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 64 KKRLKEIEEEAGALREMQAKVEKEMGA 90
++R+K E+EA ++ + KVE+ A
Sbjct: 276 EQRIKAAEKEAALAQQEEEKVEQRKRA 302
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 118 (46.6 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 41/138 (29%), Positives = 67/138 (48%)
Query: 78 REMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVN 137
R +Q K + G D A + KE V + I+VG ++ T E+++++F S G +
Sbjct: 101 RVLQQKEHRLDGRQIDPKRAMAIK--KEPV--KKIFVGGLNPETTEEKIREYFGSFGEIE 156
Query: 138 RVTILTD-KFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS-AKRTNIPGMKQFR 195
+ + TD K + +GF ++ F E AV+ L + G + ++ A+ I +QF
Sbjct: 157 TIELPTDPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSKCEIKIAQPKEIYQQQQF- 215
Query: 196 GRRPNTFGFRGRRPFIPG 213
G R FG RGR PG
Sbjct: 216 GARGGGFGGRGRGRGGPG 233
Score = 108 (43.1 bits), Expect = 0.00055, P = 0.00055
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEI 160
A K E D+ ++VG + + + ++++ +F G V TI D G+ +GF ++ F E
Sbjct: 37 ASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKES 96
Query: 161 DAVQNALLLNETELHGRQL 179
D+V L E L GRQ+
Sbjct: 97 DSVDRVLQQKEHRLDGRQI 115
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 120 (47.3 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + +A+
Sbjct: 20 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 79
Query: 169 -LNETELHGRQLKV--SAKRTNIPGMKQFRGRRP 199
LN E GR L+V +A N +K P
Sbjct: 80 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 113
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 123 (48.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 39/138 (28%), Positives = 70/138 (50%)
Query: 54 NANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAE---KEEV--- 107
N N DLE +K R I+E G + E+ +V KE+ V + + S + E +E++
Sbjct: 248 NENISDLEWLKSRSTRIKEN-GEVPEIVPEV-KEVNEVTEVTQQSDNEPELTPEEQIAQK 305
Query: 108 --DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEI-DAV 163
++ +++ N+ Y + E+ + F G + V I D + G+ KGF YV+F++ DA
Sbjct: 306 IEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDAT 365
Query: 164 QNALLLNETELHGRQLKV 181
+ L++ GR L +
Sbjct: 366 RAYRSLDKQIFQGRLLHI 383
>UNIPROTKB|O57437 [details] [associations]
symbol:dazl-a "Deleted in azoospermia-like-A" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0008354 "germ cell migration" evidence=IMP] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0032019
"mitochondrial cloud" evidence=IDA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283
GO:GO:0003723 GO:GO:0008494 GO:GO:0007281 GO:GO:0045948
GO:GO:0045495 GO:GO:0008354 EMBL:AF017778 RefSeq:NP_001081772.1
UniGene:Xl.311 HSSP:Q15427 ProteinModelPortal:O57437 GeneID:398041
KEGG:xla:398041 CTD:1618 Xenbase:XB-GENE-6078612 HOVERGEN:HBG000573
GO:GO:0032019 Uniprot:O57437
Length = 286
Score = 117 (46.2 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 32/106 (30%), Positives = 57/106 (53%)
Query: 88 MGAVQDSSSTSATQAEKEEVDS-----------RSIYVGNVDYACTPEEVQQHFQSCGTV 136
M ++SS+ +AT AE+E V+ +++VG +D E++ F G V
Sbjct: 1 MSGKEESSNYAAT-AEEEAVNQGFVLPEGEIMPNTVFVGGIDITMDEIEIRDFFTRFGNV 59
Query: 137 NRVTILTDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
V I+TD+ G KG+ ++ F E+D VQ ++ ++ HG++LK+
Sbjct: 60 KEVKIITDRTGVSKGYGFISFSDEVD-VQK-IVKSQISFHGKKLKL 103
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 120 (47.3 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 35/129 (27%), Positives = 62/129 (48%)
Query: 68 KEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSR------------SIYVG 115
+E+EEE + E++ ++E+E+ ++ A E+EE R +Y+G
Sbjct: 40 EEVEEEE--IEEIEEEIEEEVEVEEEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLG 97
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETE 173
+ T +++ S G V V I+ +K G KG+A+V F D A+ LN T+
Sbjct: 98 GIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTD 157
Query: 174 LHGRQLKVS 182
G+++K S
Sbjct: 158 FRGKRIKCS 166
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 113 (44.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFVEIDAVQNALLL 169
S+ + N+ Y TP ++++ F+ G + V I DK+ Q KGF +V F E ++AL
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79
Query: 170 NETEL-HGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 208
+ +L GR+L+V+ + + P + RG R G R R
Sbjct: 80 TDGKLVDGRELRVTLAKYDRPSDE--RGGRGGGGGRRRSR 117
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 113 (44.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFVEIDAVQNALLL 169
S+ + N+ Y TP ++++ F+ G + V I DK+ Q KGF +V F E ++AL
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79
Query: 170 NETEL-HGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRR 208
+ +L GR+L+V+ + + P + RG R G R R
Sbjct: 80 TDGKLVDGRELRVTLAKYDRPSDE--RGGRGGGGGRRRSR 117
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 117 (46.2 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ + +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGR 108
>UNIPROTKB|F1RGA7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 OMA:SQAVMKM EMBL:CU424486
RefSeq:XP_001926720.3 UniGene:Ssc.37664 Ensembl:ENSSSCT00000010898
GeneID:100152586 KEGG:ssc:100152586 Uniprot:F1RGA7
Length = 959
Score = 119 (46.9 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 35/113 (30%), Positives = 55/113 (48%)
Query: 108 DSRSIYVGNVDYACT-PEEVQQH-FQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQN 165
D +++V N+ Y+ P V + F++CG V + + G +G+ YVEF E A Q
Sbjct: 698 DGITVFVSNLPYSLEEPATVLRPLFEACGDVVEIRPIFSNRGDFRGYCYVEFKEEAAAQR 757
Query: 166 ALLLNETELHGRQLKVS--AKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 216
AL L+ + GR + VS ++ P K FR + + FI G+PF
Sbjct: 758 ALELDRKSVEGRPMFVSPCVDKSKNPDFKVFR----YSTALEKHKLFISGLPF 806
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 44/159 (27%), Positives = 77/159 (48%)
Query: 69 EIEEEAGALR--EMQAK-VEKEMGAVQ---DSSSTSATQAEKEE--VDSRSIYVGNVDYA 120
E +EEA A R E+ K VE V D S + + ++ +++ + ++
Sbjct: 748 EFKEEAAAQRALELDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTALEKHKLFISGLPFS 807
Query: 121 CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQL 179
CT EE+++ ++ GTV + ++T++ G+PKG AYVE+ E A Q L ++ + +
Sbjct: 808 CTREELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENESQASQAVLKMDGMTVKENII 867
Query: 180 KVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPFVP 218
KV+ P ++F +P R+ PG P VP
Sbjct: 868 KVAISN---PPQRKFP-EKPEA-----RKA--PGGPLVP 895
Score = 42 (19.8 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 60 LEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSI 112
LED +++ E + E + K ++ A+ A Q ++ + +++
Sbjct: 560 LEDWDIAVQKTETRLARVNEQRIKAAEKEAALAQQEEEKAEQRKRARAEKKAL 612
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 114 (45.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQN-ALL 168
++YV N+ +A T ++ + F G V +VTI+ DK + KG A++ F++ ++ QN +
Sbjct: 11 TVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCSRA 70
Query: 169 LNETELHGRQLKVS 182
LN +L GR +K S
Sbjct: 71 LNNKQLFGRVIKAS 84
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 99 (39.9 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/72 (29%), Positives = 43/72 (59%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNALLLN 170
I+V + ++ E ++ HF G + ++ D+ + KGF +V+F ++VQNA+ +
Sbjct: 6 IFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAIN-S 64
Query: 171 ETELHGRQLKVS 182
+ E++GR+L V+
Sbjct: 65 DNEINGRKLVVN 76
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 99 (39.9 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 30/118 (25%), Positives = 64/118 (54%)
Query: 69 EIEEEAGALREMQAKVEKEMGA-VQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQ 127
E + A AL M + K +G V+ + +T+ + +K+ + ++VG++ T E+++
Sbjct: 18 EHRDAAAALAAMNGR--KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIK 75
Query: 128 QHFQSCGTVNRVTILTDKF-GQPKGFAYVEFV-EIDAVQNALL-LNETELHGRQLKVS 182
F G ++ ++ D G+ KG+ +V F ++DA +NA++ + L GRQ++ +
Sbjct: 76 SAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA-ENAIVHMGGQWLGGRQIRTN 132
>UNIPROTKB|C1BY64 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
Uniprot:C1BY64
Length = 155
Score = 107 (42.7 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 30/99 (30%), Positives = 48/99 (48%)
Query: 101 QAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPK-GFAYVEFVE 159
+ EK S ++YVGN+ + T E+V + F G V R+ I DK + GF +VE+
Sbjct: 30 EQEKLLKQSNTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYT 89
Query: 160 IDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+NA+ +N T L R ++ G + RG+
Sbjct: 90 RADAENAMRFVNGTRLDDRIIRTDWDAGFKEGRQYGRGK 128
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 120 (47.3 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 32/98 (32%), Positives = 57/98 (58%)
Query: 94 SSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGF 152
+ S S T D R +YVGN+ + + +++Q F++ G V V + D + GQ KGF
Sbjct: 250 AQSNSTTVGGTGPAD-RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGF 308
Query: 153 AYVEFVEIDAVQNA-LLLN-ETELHGRQLKVSAKRTNI 188
+++FV+++ + A + LN + E+ GR +KVS+ +I
Sbjct: 309 GFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHI 346
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 117 (46.2 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 36/113 (31%), Positives = 58/113 (51%)
Query: 90 AVQDSSSTSATQAEKE-EVDSRSIYVGNVDYACTPEEVQQHFQS-CGTVNRVTILTDKFG 147
A+ + T ++E E E+ SR+IY NVD T ++V FQS CG V R+ +L D+
Sbjct: 204 AILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVH 263
Query: 148 QPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPN 200
+ A+VEF ++ AL + L + ++VS +T + + R PN
Sbjct: 264 STR-IAFVEFAMAESAVAALNCSGIVLGSQPIRVSPSKTPVRS-RITRSPSPN 314
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 121 (47.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 34/117 (29%), Positives = 63/117 (53%)
Query: 69 EIEEEAGALREMQA-KVEKEMGAVQDSSSTSATQAEKE--EVDSRSIYVGNVDYACTPEE 125
E E E AL E Q +V+ + + S +++K E +S+++ V N+ YA + E
Sbjct: 416 EAEAEK-ALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEET 474
Query: 126 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181
+Q+ F+ ++ + + G+PKG+A+VEF + + AL N TE+ GR +++
Sbjct: 475 LQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 528
Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
Identities = 32/109 (29%), Positives = 61/109 (55%)
Query: 78 REMQAKVEKEMGA---VQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 134
+ +Q +K MG ++ + S + + K+E D+R+++V N+ Y T +E++ F++
Sbjct: 334 KALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENA- 392
Query: 135 TVNRVTILTDKFGQPKGFAYVEF-VEIDAVQNALLLNE-TELHGRQLKV 181
V ++ +K G KG AY+EF E +A + AL + TE+ GR + +
Sbjct: 393 --LEVRLVLNKEGSSKGMAYIEFKTEAEA-EKALEEKQGTEVDGRAMVI 438
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 121 (47.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 34/117 (29%), Positives = 63/117 (53%)
Query: 69 EIEEEAGALREMQA-KVEKEMGAVQDSSSTSATQAEKE--EVDSRSIYVGNVDYACTPEE 125
E E E AL E Q +V+ + + S +++K E +S+++ V N+ YA + E
Sbjct: 418 EAEAEK-ALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEET 476
Query: 126 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181
+Q+ F+ ++ + + G+PKG+A+VEF + + AL N TE+ GR +++
Sbjct: 477 LQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530
Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
Identities = 32/109 (29%), Positives = 61/109 (55%)
Query: 78 REMQAKVEKEMGA---VQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 134
+ +Q +K MG ++ + S + + K+E D+R+++V N+ Y T +E++ F++
Sbjct: 336 KALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENA- 394
Query: 135 TVNRVTILTDKFGQPKGFAYVEF-VEIDAVQNALLLNE-TELHGRQLKV 181
V ++ +K G KG AY+EF E +A + AL + TE+ GR + +
Sbjct: 395 --LEVRLVLNKEGSSKGMAYIEFKTEAEA-EKALEEKQGTEVDGRAMVI 440
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 121 (47.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 34/117 (29%), Positives = 63/117 (53%)
Query: 69 EIEEEAGALREMQA-KVEKEMGAVQDSSSTSATQAEKE--EVDSRSIYVGNVDYACTPEE 125
E E E AL E Q +V+ + + S +++K E +S+++ V N+ YA + E
Sbjct: 418 EAEAEK-ALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEET 476
Query: 126 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181
+Q+ F+ ++ + + G+PKG+A+VEF + + AL N TE+ GR +++
Sbjct: 477 LQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530
Score = 113 (44.8 bits), Expect = 0.00046, P = 0.00046
Identities = 32/109 (29%), Positives = 61/109 (55%)
Query: 78 REMQAKVEKEMGA---VQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 134
+ +Q +K MG ++ + S + + K+E D+R+++V N+ Y T +E++ F++
Sbjct: 336 KALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENA- 394
Query: 135 TVNRVTILTDKFGQPKGFAYVEF-VEIDAVQNALLLNE-TELHGRQLKV 181
V ++ +K G KG AY+EF E +A + AL + TE+ GR + +
Sbjct: 395 --LEVRLVLNKEGSSKGMAYIEFKTEAEA-EKALEEKQGTEVDGRAMVI 440
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 120 (47.3 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + +A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 169 -LNETELHGRQLKV--SAKRTNIPGMKQFRGRRP 199
LN E GR L+V +A N +K P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>UNIPROTKB|Q4V7Y4 [details] [associations]
symbol:dazl-b "Deleted in azoospermia-like-B" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0007281 "germ cell
development" evidence=ISS] [GO:0008354 "germ cell migration"
evidence=ISS] [GO:0008494 "translation activator activity"
evidence=ISS] [GO:0032019 "mitochondrial cloud" evidence=ISS]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0003723
GO:GO:0008494 GO:GO:0007281 GO:GO:0045948 GO:GO:0008354
UniGene:Xl.311 HSSP:Q15427 Xenbase:XB-GENE-6078612
HOVERGEN:HBG000573 GO:GO:0032019 EMBL:BC071023 EMBL:BC097658
ProteinModelPortal:Q4V7Y4 Uniprot:Q4V7Y4
Length = 286
Score = 116 (45.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 31/106 (29%), Positives = 57/106 (53%)
Query: 88 MGAVQDSSSTSATQAEKEEVDS-----------RSIYVGNVDYACTPEEVQQHFQSCGTV 136
M ++SS+ +AT AE+E V+ +++VG +D E++ F G V
Sbjct: 1 MSGKEESSNYAAT-AEEEAVNQGFVLPEGKIMPNTVFVGGIDITMDEIEIRDFFTRFGNV 59
Query: 137 NRVTILTDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQLKV 181
V I+TD+ G KG+ ++ F E+D +Q ++ ++ HG++LK+
Sbjct: 60 KEVKIITDRTGVSKGYGFISFSDEVD-IQK-IVKSQISFHGKKLKL 103
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 109 (43.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 29/105 (27%), Positives = 55/105 (52%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNA 166
D ++VG +++ T E ++Q F G V V ++ D+ + +GF +V F + ++A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 167 LL-LNETELHGRQLKVS-AKRTNIPGMKQFRGRRPNTFGF-RGRR 208
++ +N + GRQ++V A +++ +RG GF RG R
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRGFFRGGR 108
>WB|WBGene00006697 [details] [associations]
symbol:uaf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
Uniprot:P90978
Length = 496
Score = 116 (45.9 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 42/148 (28%), Positives = 58/148 (39%)
Query: 78 REMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQS----C 133
+ MQA + G+VQ S SR +YVGN+ + C E + F C
Sbjct: 155 KNMQAAGQVPRGSVQ---SAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLC 211
Query: 134 GTVNRV--TILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 191
G IL + K FA++EF ID + + G+QLKV R P
Sbjct: 212 GLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPSQ 271
Query: 192 KQF--RGRRP-NTFGF-RGRRPFIPGVP 215
F R P +T + FI G+P
Sbjct: 272 NTFDMNSRMPVSTIVVDSANKIFIGGLP 299
Score = 38 (18.4 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 60 LEDMKKRLKEIEEEAGALREMQ 81
LED++++ ++ + G L +Q
Sbjct: 10 LEDIERQFLDVAQREGGLEAIQ 31
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 120 (47.3 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 99 ATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEF 157
+++ +EE D R+++V + T E+ F+ G V I+ DK G+ KG AYVEF
Sbjct: 229 SSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
Query: 158 VEIDAVQNALLLNETELHG 176
D+VQ A+ L+ L G
Sbjct: 289 CHEDSVQAAIALSGKRLLG 307
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 118 (46.6 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 36/107 (33%), Positives = 60/107 (56%)
Query: 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQN 165
V ++ I+VG + A T +E + +F++ G V+ I+ D+ Q P+GF +V F D+V
Sbjct: 107 VRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVD- 165
Query: 166 ALLLNET--ELHGRQLKVSA---KRTNIPGMKQFRGRRPN-TFGFRG 206
L+L++T +L+G+Q++V K N PG+ GR GF G
Sbjct: 166 -LVLHKTFHDLNGKQVEVKRALPKDAN-PGIASGGGRGSGGAGGFPG 210
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 115 (45.5 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNALL- 168
S++V NV A PE++++ F G + V I D + + P+GFAYV+F ++ ++AL
Sbjct: 11 SLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70
Query: 169 LNETELHGRQLKVSAKRTN--IPGMKQFRGRRP 199
LN + GRQ+++ + + PG + + R P
Sbjct: 71 LNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHP 103
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 120 (47.3 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + +A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 169 -LNETELHGRQLKV--SAKRTNIPGMKQFRGRRP 199
LN E GR L+V +A N +K P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 98 (39.6 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 115 GNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL-LNET 172
GN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + +A+ LN
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 173 ELHGRQLKV 181
E GR L+V
Sbjct: 62 EFSGRALRV 70
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 120 (47.3 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + +A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 169 -LNETELHGRQLKV--SAKRTNIPGMKQFRGRRP 199
LN E GR L+V +A N +K P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 116 (45.9 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 36/139 (25%), Positives = 63/139 (45%)
Query: 71 EEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQ 127
EE+ G A G + S+ S A K E D +++G + + T ++++
Sbjct: 3 EEQFGGDGAAAAATAAASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLK 62
Query: 128 QHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQL---KVSA 183
+F G V T+ D G+ +GF +V F E ++V + E +L+G+ + + A
Sbjct: 63 DYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKA 122
Query: 184 KRTNIPGMKQF-RGRRPNT 201
+T P K F G P+T
Sbjct: 123 MKTKEPVKKIFVGGLSPDT 141
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 113 (44.8 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-L 168
++YV N+ ++ T ++ + F G V +VTI+ DK + KG A++ F++ D+ QN
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRA 70
Query: 169 LNETELHGRQLKVS 182
+N +L GR +K S
Sbjct: 71 INNKQLFGRVIKAS 84
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 113 (44.8 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-L 168
++YV N+ ++ T ++ + F G V +VTI+ DK + KG A++ F++ D+ QN
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
Query: 169 LNETELHGRQLKVS 182
+N +L GR +K S
Sbjct: 71 INNKQLFGRVIKAS 84
>FB|FBgn0031224 [details] [associations]
symbol:CG11454 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 eggNOG:NOG273605 EMBL:BT021281
ProteinModelPortal:Q5BIE3 STRING:Q5BIE3 PaxDb:Q5BIE3 PRIDE:Q5BIE3
FlyBase:FBgn0031224 InParanoid:Q5BIE3 OrthoDB:EOG49ZW5B
ArrayExpress:Q5BIE3 Bgee:Q5BIE3 Uniprot:Q5BIE3
Length = 238
Score = 114 (45.2 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDA 162
E+E+ + R+++ GN+D T E + + F G + V I TD G+P+ F +V + + A
Sbjct: 63 EEEDEEQRTLFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTYQRLCA 122
Query: 163 VQNAL-LLNETELHGRQLKVSAKRTN---IPGMKQFRGR 197
V AL L EL Q KV+ K+ +P Q R R
Sbjct: 123 VPFALDLYQGLELF--QKKVTIKQQGGKQLPAYNQSRLR 159
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 120 (47.3 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + +A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 169 -LNETELHGRQLKV--SAKRTNIPGMKQFRGRRP 199
LN E GR L+V +A N +K P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 120 (47.3 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + +A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 169 -LNETELHGRQLKV--SAKRTNIPGMKQFRGRRP 199
LN E GR L+V +A N +K P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 120 (47.3 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + +A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 169 -LNETELHGRQLKV--SAKRTNIPGMKQFRGRRP 199
LN E GR L+V +A N +K P
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>UNIPROTKB|H7BY36 [details] [associations]
symbol:EWSR1 "RNA-binding protein EWS" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00641 PROSITE:PS50102 SMART:SM00360 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC002059 EMBL:AL031186 EMBL:AC000026
HGNC:HGNC:3508 ChiTaRS:EWSR1 ProteinModelPortal:H7BY36 PRIDE:H7BY36
Ensembl:ENST00000360091 Uniprot:H7BY36
Length = 308
Score = 116 (45.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 42/128 (32%), Positives = 62/128 (48%)
Query: 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTV--NRVT------ILTDK-FGQPKGFAYV 155
E+ D+ +IYV ++ + T +++ F+ CG V N+ T I DK G+PKG A V
Sbjct: 12 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 71
Query: 156 EFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGV 214
+ + + A+ + + G +LKVS R P M RG P G RG P + G
Sbjct: 72 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK-PPMNSMRGGLPPREG-RGMPPPLRGG 129
Query: 215 PFVPYGYG 222
P P G G
Sbjct: 130 PGGPGGPG 137
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 97 (39.2 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLN 170
S+Y+ N+D + E + F G V R + D G+ +GFA++EF D+ A+L
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 171 ETELHGRQLKVSAKRT 186
+ L G+++ + +RT
Sbjct: 78 DGRLIGQKI-LCVQRT 92
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 115 (45.5 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 32/113 (28%), Positives = 58/113 (51%)
Query: 73 EAGALREMQAKVEKEM--GAVQDSSSTSATQAEKEEVDSR-SIYVGNVDYACTPEEVQQH 129
E G REM+ + +M G ++ ++T + +S+ +YVGN+ + P+ ++ H
Sbjct: 174 EVGG-REMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNH 232
Query: 130 FQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKV 181
F GT+ +L D K G+ + FA++ F + AL N T+ GR++ V
Sbjct: 233 FSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIV 285
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 114 (45.2 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 29/93 (31%), Positives = 53/93 (56%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNALL- 168
S+++ NV A PE++++ F G + V I D + + P+GFAYV+F ++ ++AL
Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70
Query: 169 LNETELHGRQLKVSAKRTN--IPGMKQFRGRRP 199
LN + GRQ+++ + + PG + + R P
Sbjct: 71 LNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHP 103
>UNIPROTKB|Q3ZBJ1 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
GeneID:510872 KEGG:bta:510872 CTD:22916
GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
Length = 156
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 31/127 (24%), Positives = 61/127 (48%)
Query: 75 GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS--IYVGNVDYACTPEEVQQHFQS 132
G L+ +++ E+ +D + E+E++ +S +YVGN+ + T E++ + F
Sbjct: 4 GLLKALRSDSYVELSQYRDQHFRGDNE-EQEKLLKKSCTLYVGNLSFYTTEEQIYELFSK 62
Query: 133 CGTVNRVTILTDKFGQPK-GFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPG 190
G + ++ + DK + GF +VE+ +NA+ +N T L R ++ G
Sbjct: 63 SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122
Query: 191 MKQFRGR 197
+ RGR
Sbjct: 123 RQYGRGR 129
>UNIPROTKB|E2RFC9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
Length = 156
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 31/127 (24%), Positives = 61/127 (48%)
Query: 75 GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS--IYVGNVDYACTPEEVQQHFQS 132
G L+ +++ E+ +D + E+E++ +S +YVGN+ + T E++ + F
Sbjct: 4 GLLKALRSDSYVELSQYRDQHFRGDNE-EQEKLLKKSCTLYVGNLSFYTTEEQIYELFSK 62
Query: 133 CGTVNRVTILTDKFGQPK-GFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPG 190
G + ++ + DK + GF +VE+ +NA+ +N T L R ++ G
Sbjct: 63 SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122
Query: 191 MKQFRGR 197
+ RGR
Sbjct: 123 RQYGRGR 129
>UNIPROTKB|P52298 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
"mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0006446 "regulation of translational
initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
Uniprot:P52298
Length = 156
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 31/127 (24%), Positives = 61/127 (48%)
Query: 75 GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS--IYVGNVDYACTPEEVQQHFQS 132
G L+ +++ E+ +D + E+E++ +S +YVGN+ + T E++ + F
Sbjct: 4 GLLKALRSDSYVELSQYRDQHFRGDNE-EQEKLLKKSCTLYVGNLSFYTTEEQIYELFSK 62
Query: 133 CGTVNRVTILTDKFGQPK-GFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPG 190
G + ++ + DK + GF +VE+ +NA+ +N T L R ++ G
Sbjct: 63 SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122
Query: 191 MKQFRGR 197
+ RGR
Sbjct: 123 RQYGRGR 129
>UNIPROTKB|F2Z5Q9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
Uniprot:F2Z5Q9
Length = 156
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 31/127 (24%), Positives = 61/127 (48%)
Query: 75 GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS--IYVGNVDYACTPEEVQQHFQS 132
G L+ +++ E+ +D + E+E++ +S +YVGN+ + T E++ + F
Sbjct: 4 GLLKALRSDSYVELSQYRDQHFRGDNE-EQEKLLKKSCTLYVGNLSFYTTEEQIYELFSK 62
Query: 133 CGTVNRVTILTDKFGQPK-GFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPG 190
G + ++ + DK + GF +VE+ +NA+ +N T L R ++ G
Sbjct: 63 SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122
Query: 191 MKQFRGR 197
+ RGR
Sbjct: 123 RQYGRGR 129
>MGI|MGI:1915342 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
"mRNA cap binding complex" evidence=ISO] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
Length = 156
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 31/127 (24%), Positives = 61/127 (48%)
Query: 75 GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS--IYVGNVDYACTPEEVQQHFQS 132
G L+ +++ E+ +D + E+E++ +S +YVGN+ + T E++ + F
Sbjct: 4 GLLKALRSDSYVELSEYRDQHFRGDNE-EQEKLLKKSCTLYVGNLSFYTTEEQIYELFSK 62
Query: 133 CGTVNRVTILTDKFGQPK-GFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPG 190
G + ++ + DK + GF +VE+ +NA+ +N T L R ++ G
Sbjct: 63 SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122
Query: 191 MKQFRGR 197
+ RGR
Sbjct: 123 RQYGRGR 129
>RGD|1596188 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
"RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
Length = 156
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 31/127 (24%), Positives = 61/127 (48%)
Query: 75 GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRS--IYVGNVDYACTPEEVQQHFQS 132
G L+ +++ E+ +D + E+E++ +S +YVGN+ + T E++ + F
Sbjct: 4 GLLKALRSDSYVELSEYRDQHFRGDNE-EQEKLLKKSCTLYVGNLSFYTTEEQIYELFSK 62
Query: 133 CGTVNRVTILTDKFGQPK-GFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPG 190
G + ++ + DK + GF +VE+ +NA+ +N T L R ++ G
Sbjct: 63 SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122
Query: 191 MKQFRGR 197
+ RGR
Sbjct: 123 RQYGRGR 129
>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
symbol:MAL13P1.338 "u1 small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 117 (46.2 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 30/128 (23%), Positives = 70/128 (54%)
Query: 60 LEDMKKRLKEIEEEAGALREMQAKVE-KEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVD 118
+E K+R ++ ++E A E+ K + KE ++ TS + +++++G +
Sbjct: 55 VESFKERKEKKKKEKMAYNELILKEKRKEYDPFKNEDLTSDPK--------KTLFIGRLS 106
Query: 119 YACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNE-TELHGR 177
Y + +++++ F+S G + V I+ DK +P+G+A++EF ++ +A L + ++ R
Sbjct: 107 YEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSMNDAYKLADGKKIENR 166
Query: 178 QLKVSAKR 185
++ V +R
Sbjct: 167 RILVDIER 174
>UNIPROTKB|Q8ID37 [details] [associations]
symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 117 (46.2 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 30/128 (23%), Positives = 70/128 (54%)
Query: 60 LEDMKKRLKEIEEEAGALREMQAKVE-KEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVD 118
+E K+R ++ ++E A E+ K + KE ++ TS + +++++G +
Sbjct: 55 VESFKERKEKKKKEKMAYNELILKEKRKEYDPFKNEDLTSDPK--------KTLFIGRLS 106
Query: 119 YACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNE-TELHGR 177
Y + +++++ F+S G + V I+ DK +P+G+A++EF ++ +A L + ++ R
Sbjct: 107 YEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSMNDAYKLADGKKIENR 166
Query: 178 QLKVSAKR 185
++ V +R
Sbjct: 167 RILVDIER 174
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 117 (46.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 86 KEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 145
+ +G + + A K ++ SI+V N+ + CTPE++++ F + G V I+T K
Sbjct: 99 RTLGPIVERDLERQFDATKRNFEN-SIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK 157
Query: 146 FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIP--GMKQFRGRRPNTFG 203
G +G VEF + ++VQ+A+ + L K+ ++ N P K+F +
Sbjct: 158 -GHHRGMGTVEFTKNESVQDAISKFDGALF-MDRKLMVRQDNPPPEAAKEFSKKATREEI 215
Query: 204 FRGRRPFIPGVPF 216
G FI +P+
Sbjct: 216 DNGFEVFIINLPY 228
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 114 (45.2 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL 167
+ R I+V NV+++ + +++++ F GTV V + G KGF YV F + AL
Sbjct: 994 EGREIHVSNVNWSASEDDLKELFSRFGTVELVRLPRKVDGGSKGFGYVVFSSKEEATAAL 1053
Query: 168 LLNETELHGRQL--KVSA 183
++E E GR L KVSA
Sbjct: 1054 AMHEQEFRGRPLHVKVSA 1071
Score = 49 (22.3 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 55 ANSKDLEDMKKRLKEIEEEAGALREMQAKVEKE-MGAVQDSSSTSATQAEK 104
A+ +D ED ++ I E A+R + A+ ++E A ++ +AT+ ++
Sbjct: 735 AHCEDYEDSEELQLAILETRKAMRAINARRQREAQEAAAQQAAAAATETQE 785
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 117 (46.2 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + +A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 169 -LNETELHGRQLKV 181
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 120 (47.3 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 42/149 (28%), Positives = 70/149 (46%)
Query: 79 EMQAKVEKEMGAVQDSSSTSATQAEKEEV------DSRSIYVGNVDYACTPEEVQ--QHF 130
EM++ EK S ++ + +V D+ +++V N+ Y T EV+ + F
Sbjct: 561 EMESGPEKPDHPTNQKEKPSTSRKDVPKVLHDSSKDNITVFVSNLSYNMTDPEVKLKELF 620
Query: 131 QSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSA---KRTN 187
+SCG V++V + G +G+ YVEF + + AL ++ + GR + VS K N
Sbjct: 621 ESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALGMDRKVVEGRPMFVSPCVDKNKN 680
Query: 188 IPGMKQFRGRRPNTFGFRGRRPFIPGVPF 216
P K FR + + FI G+PF
Sbjct: 681 -PDFKVFR----YSTTLEKHKLFISGLPF 704
>UNIPROTKB|B7ZKM0 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AC008119
InterPro:IPR008669 Pfam:PF05391 UniGene:Hs.584842 HGNC:HGNC:16860
HOVERGEN:HBG053888 ChiTaRS:SART3 EMBL:AC010206 EMBL:BC143253
IPI:IPI00719256 SMR:B7ZKM0 STRING:B7ZKM0 Ensembl:ENST00000431469
UCSC:uc010swx.1 Uniprot:B7ZKM0
Length = 927
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 42/157 (26%), Positives = 77/157 (49%)
Query: 69 EIEEEAGALR--EMQAK-VEKEMGAVQ---DSSSTSATQAEK--EEVDSRSIYVGNVDYA 120
E +EE AL+ EM K VE V D S + + ++ +++ + ++
Sbjct: 716 EFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFS 775
Query: 121 CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV-EIDAVQNALLLNETELHGRQL 179
CT EE+++ ++ GTV + ++T++ G+PKG AYVE+ E A Q + ++ + +
Sbjct: 776 CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 835
Query: 180 KVSAK---RTNIPGMKQFR----GRR--PNTFGFRGR 207
KV+ + +P + R G P T+G RG+
Sbjct: 836 KVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGK 872
Score = 115 (45.5 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 32/113 (28%), Positives = 58/113 (51%)
Query: 108 DSRSIYVGNVDYACT-PE-EVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQN 165
DS +++V N+ Y+ P+ +++ F++CG V ++ + G +G+ YVEF E +
Sbjct: 666 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQ 725
Query: 166 ALLLNETELHGRQLKVS--AKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 216
AL ++ + GR + VS ++ P K FR + + FI G+PF
Sbjct: 726 ALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFR----YSTSLEKHKLFISGLPF 774
Score = 44 (20.5 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 60 LEDMKKRLKEIEEEAGALREMQAKV-EKEMGAVQDSSSTSATQAEKEEVDSRSI 112
LED +++ E + E + K EKE VQ A Q ++ + +++
Sbjct: 523 LEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEE-KAEQRKRARAEKKAL 575
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 114 (45.2 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 36/126 (28%), Positives = 58/126 (46%)
Query: 84 VEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILT 143
+ E +D + A E+ ++VGN+ + ++ Q F+S G V V ++
Sbjct: 65 ITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIY 124
Query: 144 DKF-GQPKGFAYVEFVEIDAVQNALL-LNETELHGRQLKVSAKRTNIPGMKQF-RGRRPN 200
DK G+ +GF +V + V+ A N EL GR L+V+A F RG R +
Sbjct: 125 DKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPR-S 183
Query: 201 TFGFRG 206
+FG G
Sbjct: 184 SFGSSG 189
Score = 106 (42.4 bits), Expect = 0.00086, P = 0.00086
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL-L 169
+YVGN+ + ++ F G V ++ D+ G+ KGF +V + VQNA+ L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 170 NETELHGRQLKVSAKRTNIPGMKQF 194
+ +L GRQ++VS P +Q+
Sbjct: 266 DGADLDGRQIRVSEAEAR-PPRRQY 289
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 117 (46.2 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + +A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 169 -LNETELHGRQLKV 181
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 118 (46.6 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAV 163
EE D R++ + + P ++++ F + G V V I+TD + G+ KG YVEF + ++V
Sbjct: 165 EERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 224
Query: 164 QNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGF 204
L LN L G L++ +RT + +T GF
Sbjct: 225 PLGLALNGQRLMGAPLQI--QRTCAERNRAANSSVASTLGF 263
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 96 (38.9 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 28/105 (26%), Positives = 51/105 (48%)
Query: 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFV---EIDAVQNAL 167
+++G + + T + +++ F GT+ ++ D+ + +GF +V F E DA A+
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63
Query: 168 LLNETELHGRQLKVSAKRTNIPGMKQ--FRGR----RPNTFGFRG 206
N E GR ++V K + P + F+GR P G+RG
Sbjct: 64 --NNQEFDGRIIRVD-KASERPAARNGGFQGRGGYNSPADGGYRG 105
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 96 (38.9 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFVEIDAVQNAL-L 168
S+ V N+ Y +P+ +++ F+ G V V I D++ + +GFA+V F + ++A+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 169 LNETELHGRQLKVSAKRTNIPGMKQFRGRRP 199
++ L GR+L+V R P R P
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSHHSRRGP 105
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 113 (44.8 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFVEI-DAVQNALL 168
++YV N+D++ T ++ F + G V RVT+L D+ Q +G A+V +V DA + A
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARS 117
Query: 169 LNETELHGRQLKVSAKRTN 187
++ L+GR+L VS N
Sbjct: 118 MDAKILNGRKLTVSIAADN 136
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 118 (46.6 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 35/141 (24%), Positives = 65/141 (46%)
Query: 64 KKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTP 123
KK+ K+ + + + VE+++ + +T E++ V +YVG + Y T
Sbjct: 117 KKKKKKRKVNKTPKKAEEGNVEEKVKVEEIEVNTD--NKEEDGVVPNKLYVGGIPYQSTE 174
Query: 124 EEVQQHFQSCGTVNRVTI-LTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS 182
+E++ +F+SCG + +V + + G G A++ F D + AL + + R L +
Sbjct: 175 DEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDRAAMGDRYLTIQ 234
Query: 183 --AKRT--NIPGMKQFRGRRP 199
K T +IP K G P
Sbjct: 235 QYVKTTTPSIPRRKTSSGFAP 255
Score = 113 (44.8 bits), Expect = 0.00037, P = 0.00037
Identities = 40/163 (24%), Positives = 74/163 (45%)
Query: 59 DLEDMKKRLKEIEEEAGALREM--QAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGN 116
D ED KR + A R + Q V+ ++ ++S E + +R +Y+GN
Sbjct: 210 DTEDGAKRALAFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNR-VYIGN 268
Query: 117 VDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELH 175
+ + T ++++ F C +N V + +K G+ KG+A+V+F + +V AL L++ +
Sbjct: 269 LAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVIC 327
Query: 176 GRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPFVP 218
GR +K+ + P G N + + P VP
Sbjct: 328 GRPVKICCALKDRPATDHTPGETNNAGSYNMEDTYAAADP-VP 369
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 114 (45.2 bits), Expect = 0.00026, P = 0.00026
Identities = 39/145 (26%), Positives = 65/145 (44%)
Query: 56 NSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVG 115
+S D E + E E+E ++ + VE + A + S+ T + S++++
Sbjct: 245 SSSD-ESSESEEDESEDEEETPKKKSSDVEM-VDAEKSSAKQPKTPSTPAAGGSKTLFAA 302
Query: 116 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETEL 174
N+ + +V+ F+ G V V T++ G +GF +VEF + Q AL E
Sbjct: 303 NLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-----EF 357
Query: 175 HGRQLKVSAKRTNIPGMKQFRGRRP 199
HGR L R +I + RG RP
Sbjct: 358 HGRPLLGREIRLDIAQERGERGERP 382
Score = 106 (42.4 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 35/109 (32%), Positives = 54/109 (49%)
Query: 108 DSRSIYVGNVDYACTPEEVQ----QHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDA 162
D + I+V D + + ++++ +HF SCG + V++ D+ G KG AY+EF E
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE--G 456
Query: 163 VQNALLLNETELHGR-QLKVSAKRT--NIPGMKQFRGRRPNTFGFRGRR 208
+ AL LN +++ G L V R + G F GR FG G R
Sbjct: 457 KEKALELNGSDMGGGFYLVVDEPRPRGDSSGGGGF-GRGNGRFGSGGGR 504
Score = 50 (22.7 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 55 ANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEE 106
A+S D D +E E+E A ++ K K+ + +SS + ++E EE
Sbjct: 213 ASSSDSSDEDSD-EESEDEKPAQKKADTKASKKSSS-DESSESEEDESEDEE 262
Score = 46 (21.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 54 NANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSS 96
+++S D + + + ++ A A + K +KE + DSSS
Sbjct: 122 DSSSSDDDSSDEEVAVTKKPAAAAKNGSVKAKKESSSEDDSSS 164
Score = 44 (20.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 62 DMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEE 106
D K LK+ +++ A + + V+K V+ SS S +++E+EE
Sbjct: 32 DTKVSLKKQKKDVIAAVQKEKAVKKVPKKVE-SSDDSDSESEEEE 75
WARNING: HSPs involving 196 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 222 190 0.00091 110 3 11 23 0.37 33
31 0.42 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 446
No. of states in DFA: 548 (58 KB)
Total size of DFA: 142 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.12u 0.13s 24.25t Elapsed: 00:00:01
Total cpu time: 24.15u 0.13s 24.28t Elapsed: 00:00:01
Start: Fri May 10 20:12:31 2013 End: Fri May 10 20:12:32 2013
WARNINGS ISSUED: 2