BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027515
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 98/135 (72%), Gaps = 10/135 (7%)
Query: 58 KDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNV 117
K+L +MK+R+ E+E EA LR MQ +++ E T A + +KE +D++S+YVGNV
Sbjct: 12 KELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALRNDKESIDAQSVYVGNV 62
Query: 118 DYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHG 176
DY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E V NALLLN + LH
Sbjct: 63 DYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHE 122
Query: 177 RQLKVSAKRTNIPGM 191
R LKV+ KRTN+PGM
Sbjct: 123 RPLKVTPKRTNVPGM 137
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 33/227 (14%)
Query: 21 DADIDVDEHEH-EHDHDHDHEHEHDADNENEEDPNAN-SKDLEDMKKRLKEIEEEAGALR 78
D DI ++E + E + + E E + E EE+ + +LE +K R+KE+EEEA ++
Sbjct: 3 DEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIK 62
Query: 79 EMQAKVEKEM--GAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTV 136
+MQ++V+K+M G+ ++ + EK+E+D+RS+YVGNVDY + EE++ HF CGT+
Sbjct: 63 QMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTI 122
Query: 137 NRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMK--- 192
NRVTIL +K G PKGFAY+EF + V+ AL +NET GRQ+KV +KRTN PG+
Sbjct: 123 NRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTN 182
Query: 193 -----QFRGRRP--------NTF-------GFRGRRPFIPGVPFVPY 219
FRGR +TF G+RGR + + PY
Sbjct: 183 RFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANY-----YAPY 224
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 113/188 (60%), Gaps = 32/188 (17%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEM--GAVQDSSSTSATQAEKEEVDSRSIYVGN 116
+LE +K R+KE+EEEA +++MQ++V+K+M G+ ++ + EK+E+D+RS+YVGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGN 102
Query: 117 VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELH 175
VDY + EE++ HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NET
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 176 GRQLKVSAKRTNIPGM------------------------KQFRGRRPNTFGFRGRRPFI 211
GRQ+KV +KRTN PG+ FRG R G+RGR +
Sbjct: 163 GRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANY- 221
Query: 212 PGVPFVPY 219
+ PY
Sbjct: 222 ----YAPY 225
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 95/147 (64%), Gaps = 13/147 (8%)
Query: 51 EDPNANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTS-------ATQAE 103
EDP +LE+MKKR +E+EEEA L E+Q +E + +
Sbjct: 40 EDP-----ELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTD 94
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDA 162
+EE+DSRS+YVGNVDY T +++ +FQSCGTVNR+TIL+DK G PKG YVEFV ++
Sbjct: 95 QEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKES 154
Query: 163 VQNALLLNETELHGRQLKVSAKRTNIP 189
+ NA+ LN++ + RQLK++ KRTN+P
Sbjct: 155 IINAMALNDSFFNERQLKITPKRTNLP 181
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 9/154 (5%)
Query: 42 EHDADNENEEDPNANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ---DSSSTS 98
E D + EDP +LE +K R++E+EEEA L+E+Q +VEK+M ++
Sbjct: 102 EADPGDGAIEDP-----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 156
Query: 99 ATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEF 157
+ EK E D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF
Sbjct: 157 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 216
Query: 158 VEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 191
+ ++V+ +L L+E+ GRQ+KV KRTN PG+
Sbjct: 217 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 250
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 9/154 (5%)
Query: 42 EHDADNENEEDPNANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ---DSSSTS 98
E D + EDP +LE +K R++E+EEEA L+E+Q +VEK+M ++
Sbjct: 106 EGDPGDGAIEDP-----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 99 ATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEF 157
+ EK E D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF
Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
Query: 158 VEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 191
+ ++V+ +L L+E+ GRQ+KV KRTN PG+
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 254
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 9/154 (5%)
Query: 42 EHDADNENEEDPNANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ---DSSSTS 98
E D + EDP +LE +K R++E+EEEA L+E+Q +VEK+M ++
Sbjct: 106 EGDPGDGAIEDP-----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 99 ATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEF 157
+ EK E D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF
Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
Query: 158 VEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 191
+ ++V+ +L L+E+ GRQ+KV KRTN PG+
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 254
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 100/145 (68%), Gaps = 9/145 (6%)
Query: 51 EDPNANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ---DSSSTSATQAEKEEV 107
EDP +LE +K R++E+EEEA L+E+Q +VEK+M ++ + EK E
Sbjct: 106 EDP-----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEA 160
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNA 166
D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +
Sbjct: 161 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTS 220
Query: 167 LLLNETELHGRQLKVSAKRTNIPGM 191
L L+E+ GRQ+KV KRTN PG+
Sbjct: 221 LALDESLFRGRQIKVVPKRTNRPGI 245
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 100/145 (68%), Gaps = 9/145 (6%)
Query: 51 EDPNANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ---DSSSTSATQAEKEEV 107
EDP +LE +K R++E+EEEA L+E+Q +VEK+M ++ + EK E
Sbjct: 105 EDP-----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEA 159
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNA 166
D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +
Sbjct: 160 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTS 219
Query: 167 LLLNETELHGRQLKVSAKRTNIPGM 191
L L+E+ GRQ+KV KRTN PG+
Sbjct: 220 LALDESLFRGRQIKVVPKRTNRPGI 244
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 100/145 (68%), Gaps = 9/145 (6%)
Query: 51 EDPNANSKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQ---DSSSTSATQAEKEEV 107
EDP +LE +K R++E+EEEA L+E+Q +VEK+M ++ + EK E
Sbjct: 106 EDP-----ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEA 160
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNA 166
D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +
Sbjct: 161 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTS 220
Query: 167 LLLNETELHGRQLKVSAKRTNIPGM 191
L L+E+ GRQ+KV KRTN PG+
Sbjct: 221 LALDESLFRGRQIKVVPKRTNRPGI 245
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 102/182 (56%), Gaps = 34/182 (18%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAK--------------VEKEM--GAVQDSSSTSATQA 102
+L+ ++ R++E+EEEA L+ + + + +M G + +
Sbjct: 26 ELKAIRMRVREMEEEAERLKGLSGQDKSIGVSPRPCMKLIHSKMTAGEYTEGPPRPLSAE 85
Query: 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEID 161
EK+E+D RS+YVGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E +
Sbjct: 86 EKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERN 145
Query: 162 AVQNALLLNETELHGRQLKVSAKRTNIPGMKQF-----------------RGRRPNTFGF 204
+V A+ ++ET GR +KV KRTN+PG+ RG+RP F
Sbjct: 146 SVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205
Query: 205 RG 206
RG
Sbjct: 206 RG 207
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 97/151 (64%), Gaps = 19/151 (12%)
Query: 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMG-----AVQDSSSTSATQA----------- 102
+L+ ++ R++E+EEEA L+ + + +K +G +Q + S A
Sbjct: 26 ELKAIRMRVREMEEEAERLKGLSGQ-DKSIGVSTRPCMQTTHSKMTAGAYTEGPPQPLSA 84
Query: 103 -EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEI 160
EK+E+D RS+YVGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E
Sbjct: 85 EEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAER 144
Query: 161 DAVQNALLLNETELHGRQLKVSAKRTNIPGM 191
++V A+ ++ET GR +KV KRTN+PG+
Sbjct: 145 NSVDAAVAMDETVFRGRTIKVLPKRTNMPGI 175
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 99/183 (54%), Gaps = 19/183 (10%)
Query: 46 DNENEEDPNANSKDLEDMKKRLKEIEEEAGALRE--MQAKVEKEMGAVQD--------SS 95
+ EN + ++LE +K ++ +E+ G R +Q + E+E G
Sbjct: 73 EQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTAAGQLLSPETVGC 132
Query: 96 STSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAY 154
S T EK E D RS+YVGNVDY + EE++ HF CG V+RVTIL DKF G PKG+AY
Sbjct: 133 PLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAY 192
Query: 155 VEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQF-RGRRPNTFGFRGRRPFIPG 213
+EF +VQ A+ L+++ GR +KV KRTN PG+ RG G RG P G
Sbjct: 193 IEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRG------GLRG-HPGSRG 245
Query: 214 VPF 216
PF
Sbjct: 246 APF 248
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 88/136 (64%), Gaps = 5/136 (3%)
Query: 69 EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQ 128
EIE E+ L ++Q K+ K + + ++ T+ E++ +D++S+++GNVD+ T EEV++
Sbjct: 23 EIEAESAILEQIQNKMAKNL---ESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEE 79
Query: 129 HFQSCGTVNRVTILTDKFGQP-KGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTN 187
HF+ CG + R TI DKF + K FAY+EF + +++NAL++N + R + V+AKRTN
Sbjct: 80 HFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTN 139
Query: 188 IPGMKQ-FRGRRPNTF 202
IPGM RG TF
Sbjct: 140 IPGMGHGVRGSSRGTF 155
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 89/136 (65%), Gaps = 5/136 (3%)
Query: 69 EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQ 128
EIE E+ L+++Q K+ K + + ++ T+ E++ +D++S+++GNVD+ T EE+++
Sbjct: 17 EIEAESAILQQIQNKMAKHL---ESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEE 73
Query: 129 HFQSCGTVNRVTILTDKFGQP-KGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTN 187
HF+ CG + + TI DKF + K FAY+EF + +++NAL++N + R + V+AKRTN
Sbjct: 74 HFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTN 133
Query: 188 IPGMKQ-FRGRRPNTF 202
IPGM RG TF
Sbjct: 134 IPGMGHGVRGSSRGTF 149
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEID 161
E E D RS+YVGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF
Sbjct: 132 ENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKS 191
Query: 162 AVQNALLLNETELHGRQLKVSAKRTNIPGM 191
+VQ A+ L+E+ GR +KV KRTN PG+
Sbjct: 192 SVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221
>sp|Q5XFR0|EPAB2_MOUSE Embryonic polyadenylate-binding protein 2 OS=Mus musculus
GN=Pabpn1l PE=2 SV=1
Length = 273
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVE 156
S T E E D RS++VGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+E
Sbjct: 131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIE 190
Query: 157 FVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 191
F +V+ A+ L+E+ GR +KV KRTN PG+
Sbjct: 191 FASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225
>sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGN1 PE=1 SV=1
Length = 250
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEI 160
A + E DSRSI+VGN+ TPE+++ HF+ CG + R+T+L D+ G PKG+ Y+EF
Sbjct: 56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESP 115
Query: 161 DAVQNALLLNETELHGRQLKVSAKRTNIPGM 191
+ AL LN EL G+++ VS KRTNIPG
Sbjct: 116 AYREKALQLNGGELKGKKIAVSRKRTNIPGF 146
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEI 160
+E D RS++VGN+ Y +++HF CG++ V I+ DK G KGF YV F
Sbjct: 279 SETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENT 338
Query: 161 DAVQNALLLNETELHGRQLKV 181
D+V AL LN +EL GR+L+V
Sbjct: 339 DSVHLALKLNNSELMGRKLRV 359
>sp|Q75BJ7|NOP12_ASHGO Nucleolar protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP12 PE=3 SV=1
Length = 426
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 39/216 (18%)
Query: 2 EQHDEQEHDVYGGEIPDEMDADIDVDEHEHEHDHDHDHEHEHDADNENEEDPNANSKDLE 61
E+ + E V+ G +P E D V ++ + + ++E++E+ A +E
Sbjct: 130 EELAKAERTVFVGNVPHEAITDKKV----YKEFKQLVAQRKLSKEDEDDEEQKAEKYAVE 185
Query: 62 DMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDS------------ 109
++ R EE AL A V++++ +DS + AEKE V +
Sbjct: 186 SIRFRSIAFEE---ALPRKVAFVQQKLHHTRDSVNAYVVYAEKEAVTAACKLNGSVFHDH 242
Query: 110 ----------------RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGF 152
RS++VGN+D+ + E + +HF SCG + V I+ D K KGF
Sbjct: 243 HLRFDSVAHPAPHDRKRSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGF 302
Query: 153 AYVEFVEIDAVQNALLLNETEL---HGRQLKVSAKR 185
AYV+F ++ +V ALLLN+ ++ GR+L+V+ R
Sbjct: 303 AYVQFADLVSVNKALLLNDKKMAVGKGRKLRVTRCR 338
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 67 LKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEV 126
KE A AL+ A++ + D +S +A++ D RS++VGN+ Y +
Sbjct: 248 FKEERAAAKALQRNGAQIAEGFRIRVDLASETASR------DKRSVFVGNLPYRVDESAL 301
Query: 127 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKV 181
++HF CG++ V I+ + G +GF YV F DAV AL LN +EL GR+L+V
Sbjct: 302 EEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV 357
>sp|Q6FUS6|NOP12_CANGA Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP12 PE=3
SV=1
Length = 396
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+D+ E + +HF +CG++ V I+ D K KGFAYV+F E+ +V ALL
Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287
Query: 169 LNETELHGRQLKVSAKRTNIPGMKQFRGRRPN 200
LNE + + + ++ + K R P
Sbjct: 288 LNEKPMISQNEHLKKRKLRVTRCKNIRKVEPT 319
>sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP12 PE=3 SV=2
Length = 462
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALL 168
RS++VGN+D+ E + +HF+ CG + V I+ D K KGFAYV+F + +V ALL
Sbjct: 297 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 356
Query: 169 LNETELH----GRQLKVS 182
L+E ++H R+L++S
Sbjct: 357 LHEKKIHEGKKARKLRIS 374
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNA 166
D RS++VGN+ Y +++HF CG++ V I+ + G +GF YV F DAV A
Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 348
Query: 167 LLLNETELHGRQLKV 181
L LN +EL GR+L+V
Sbjct: 349 LKLNNSELMGRKLRV 363
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALL 168
RSI+VGN+D+ E + +HF+ CG + V I+ D K KGFAYV+F ++ +V ALL
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
Query: 169 LNETELHGRQ 178
LNE + ++
Sbjct: 339 LNEKPMKSQK 348
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALL 168
R ++VGN+ + E + ++F CG+++ V I+ D K KGFAY++F + V ALL
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 169 LNETEL-HGRQLKVSAKRTNIP 189
LNE ++ GR L++ ++ P
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
>sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NOP12 PE=3 SV=1
Length = 509
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALL 168
R ++VG +D+ E + + F SCG V V I+ D K KGFAYV+F ++++V+ ALL
Sbjct: 274 RCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALL 333
Query: 169 LN--------ETELHGRQLKVS 182
LN ++ + R+L+VS
Sbjct: 334 LNGKGINELSKSTTNKRKLRVS 355
>sp|Q09100|RNP24_SCHPO RNA-binding protein rnp24 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rnp24 PE=4 SV=2
Length = 369
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 95 SSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILT-DKFGQPKGFA 153
S T++ Q+ K+E S ++VGN+D+ T ++++HF G + RV ++T + G+ KGF
Sbjct: 214 SKTASIQSSKKEPSS-ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFG 272
Query: 154 YVEFVEIDAVQNALLL 169
+V+F +ID A+ L
Sbjct: 273 FVDFPDIDTCMKAMEL 288
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 23/106 (21%)
Query: 101 QAEKEEVDSRS---IYVGNVDYACTPEEVQQHF--QSCGTVNRVT------ILTDKFG-- 147
+ E +E RS I+VGN+ + T E + F ++ + V+ I T++
Sbjct: 93 EGESQEESKRSPWGIWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRI 152
Query: 148 ----------QPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSA 183
Q KGFAYV+F DA++ AL +E L+GR + + +
Sbjct: 153 HMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILIKS 198
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV----EIDAVQNA 166
+IYV NV+ A T EE+++HF CGT+ ++ D+ G+ KGF +V F IDAV+
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT- 363
Query: 167 LLLNETELHGRQLKVS 182
+ HG+ L V+
Sbjct: 364 --FHGQMFHGKPLYVA 377
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 108 DSRSIYVGNVDYACTPEEV-----QQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDA 162
D+R VGNV PE V Q F+ G + + T + G+ +G+ +V+F + DA
Sbjct: 105 DARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDA 164
Query: 163 VQNAL-LLNETELHGRQLKV 181
A+ LN T + +++ V
Sbjct: 165 AHAAIQTLNSTIVADKEIYV 184
>sp|Q80YT9|RBM11_MOUSE Splicing regulator RBM11 OS=Mus musculus GN=Rbm11 PE=1 SV=1
Length = 238
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAV 163
+EE D R+++VGN++ E + + F G + +VT+ D+ G+PK F +V F ++V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESV 63
Query: 164 QNAL-LLNETELHGR----QLKVSAKRTNIPGMKQFRG-RRPNTFGFR----GRRPFIPG 213
A+ LLN L+GR Q + + R++ P + F + N+ FR RP P
Sbjct: 64 SYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCAKINSHSFRNDEMAGRPSFP- 122
Query: 214 VPFVP 218
VPF P
Sbjct: 123 VPFFP 127
>sp|Q7QCB6|NCBP2_ANOGA Nuclear cap-binding protein subunit 2 OS=Anopheles gambiae GN=Cbp20
PE=3 SV=3
Length = 163
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFV-EIDAVQNA 166
S ++YVGN+ + T E++ + F CG V R+ + DKF + P GF +VE+ +DA
Sbjct: 37 SSTLYVGNLSFYTTEEQIHELFSRCGDVRRIIMGLDKFKKTPCGFCFVEYYSRLDAESAM 96
Query: 167 LLLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+N T L R ++V I G + RG+
Sbjct: 97 RYINGTRLDDRIVRVDWDAGFIEGRQYGRGK 127
>sp|Q804A9|DAZL_CHICK Deleted in azoospermia-like OS=Gallus gallus GN=DAZL PE=2 SV=1
Length = 289
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 80 MQAKVEKEMGAVQDSSSTSATQAE-----KEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 134
M A E + G++ + ++ S+T + + ++ +++VG +D E++ +F+ G
Sbjct: 1 MSANAEAQCGSISEDNTHSSTTCQGYVLPEGKIMPNTVFVGGIDIRMNEAEIRSYFEQYG 60
Query: 135 TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQF 194
TV V I+TD+ G KG+ +V F++ VQ ++ ++ +HG++LK+ + +
Sbjct: 61 TVKEVKIITDRTGVSKGYGFVSFLDNVDVQK-IVESQISVHGKRLKLGPAIRKQQNLCSY 119
Query: 195 RGRRPNTF 202
RP F
Sbjct: 120 MQPRPLAF 127
>sp|Q08920|NCBP2_YEAST Nuclear cap-binding protein subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CBC2 PE=1 SV=1
Length = 208
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVE 156
+ Q +E + S +IYVGN+ + + E++ + F CGT+ R+ + D+F P GF ++
Sbjct: 34 NGLQELRESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFII 93
Query: 157 FVEIDAVQNAL-LLNETELHGRQLKV 181
+ D NAL L++T+L + + +
Sbjct: 94 YSCPDEALNALKYLSDTKLDEKTITI 119
>sp|Q177H0|NCBP2_AEDAE Nuclear cap-binding protein subunit 2 OS=Aedes aegypti GN=Cbp20
PE=3 SV=1
Length = 159
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEIDAVQNAL-L 168
++Y+GN+ + T E++ + F CG + R+ + DKF + P GF +VE+ D ++A+
Sbjct: 35 TLYIGNLSFYTTEEQIHELFSRCGDIRRIVMGLDKFKKTPCGFCFVEYYARDDAESAMRY 94
Query: 169 LNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+N T L R ++V + G + RG+
Sbjct: 95 INGTRLDDRIVRVDWDAGFVEGRQYGRGK 123
>sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1
Length = 266
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEID 161
A E D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 162 AVQNAL-LLNETELHGRQLKV 181
+V A+ LLN +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>sp|Q293V6|NCBP2_DROPS Nuclear cap-binding protein subunit 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Cbp20 PE=3 SV=1
Length = 154
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE 156
S ++ E+ DS ++YVGN+ + T E++ + F CG V + + DK+ + P GF +VE
Sbjct: 18 SRSEQERSLKDSCTLYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDKYKKTPCGFCFVE 77
Query: 157 FVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ ++A+ +N T L R ++V I G + RG+
Sbjct: 78 YYIRSEAESAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGK 119
>sp|B4GLK8|NCBP2_DROPE Nuclear cap-binding protein subunit 2 OS=Drosophila persimilis
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE 156
S ++ E+ DS ++YVGN+ + T E++ + F CG V + + DK+ + P GF +VE
Sbjct: 18 SRSEQERSLKDSCTLYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDKYKKTPCGFCFVE 77
Query: 157 FVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ ++A+ +N T L R ++V I G + RG+
Sbjct: 78 YYIRSEAESAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGK 119
>sp|B0W939|NCBP2_CULQU Nuclear cap-binding protein subunit 2 OS=Culex quinquefasciatus
GN=Cbp20 PE=3 SV=1
Length = 160
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE-FVEIDAVQN 165
+S ++Y+GN+ + T E++ + F CG + R+ + DKF + P GF +VE + ID+
Sbjct: 32 NSSTLYIGNLSFYTTEEQIHELFSRCGDIRRIVMGLDKFKKTPCGFCFVEYYARIDSEYA 91
Query: 166 ALLLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+N T L R ++V + G + RG+
Sbjct: 92 MRYINGTRLDDRIVRVDWDAGFVEGRQYGRGK 123
>sp|B3LYP1|NCBP2_DROAN Nuclear cap-binding protein subunit 2 OS=Drosophila ananassae
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE 156
S ++ E+ DS ++YVGN+ + T E++ + F CG V + + DK+ + P GF +VE
Sbjct: 18 SRSEQERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVE 77
Query: 157 FVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ + A+ +N T L R ++V I G + RG+
Sbjct: 78 YYTRAEAEAAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGK 119
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL- 168
SIYVGN+ Y+ T +++ + F G+V RV + TD+ G+ +GF +VE +E A ++A +
Sbjct: 2 SIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVE-MESSAAEDAAIQ 60
Query: 169 -LNETELHGRQLKVSAKR 185
L+ E GR LKV+ R
Sbjct: 61 ALDGAEWMGRVLKVNKAR 78
>sp|B4JUT1|NCBP2_DROGR Nuclear cap-binding protein subunit 2 OS=Drosophila grimshawi
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE 156
S ++ E+ DS ++YVGN+ + T E++ + F CG V + + DK+ + P GF +VE
Sbjct: 18 SRSEQERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRIIVMGLDKYKKTPCGFCFVE 77
Query: 157 FVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ + A+ +N T L R ++V I G + RG+
Sbjct: 78 YYTRAEAEAAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGK 119
>sp|P57052|RBM11_HUMAN Splicing regulator RBM11 OS=Homo sapiens GN=RBM11 PE=1 SV=1
Length = 281
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAV 163
+EE D R+++VGN++ E + + F G + +VTI D+ G+PK F +V F ++V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESV 63
Query: 164 QNAL-LLNETELHGR----QLKVSAKRTNIPGMKQF 194
A+ LLN L+GR Q + + R++ P + F
Sbjct: 64 SYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSF 99
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL- 168
SIYVGN+ Y T E++ F G+V RV + TD+ G+ +GFA+VE DA + A +
Sbjct: 2 SIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGS-DAEETAAIE 60
Query: 169 -LNETELHGRQLKVS 182
L+ E GR LKV+
Sbjct: 61 GLDGAEWMGRDLKVN 75
>sp|B4NB54|NCBP2_DROWI Nuclear cap-binding protein subunit 2 OS=Drosophila willistoni
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE 156
S ++ E+ +S ++YVGN+ + T E++ + F CG V + + DK+ + P GF +VE
Sbjct: 18 SRSEQERSLKESCTLYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDKYKKTPCGFCFVE 77
Query: 157 FVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ ++A+ +N T L R ++V I G + RG+
Sbjct: 78 YYTRSEAESAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGK 119
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALL- 168
+IYVGN+ Y T +++ F G V RV + TD+ G+ +GFA+VE E DA ++A +
Sbjct: 2 TIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNE-DAQEDAAIT 60
Query: 169 -LNETELHGRQLKVS 182
L+ E GRQL+V+
Sbjct: 61 ELDGAEWMGRQLRVN 75
>sp|B4KCD5|NCBP2_DROMO Nuclear cap-binding protein subunit 2 OS=Drosophila mojavensis
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE 156
S ++ E+ DS ++YVGN+ + T E++ + F CG V + + DK+ + P GF +VE
Sbjct: 18 SRSEQERSLRDSSTLYVGNLSFYTTEEQIHELFSRCGDVRIIVMGLDKYKKTPCGFCFVE 77
Query: 157 FVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ + A+ +N T L R ++V + G + RG+
Sbjct: 78 YYTRAEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGRGK 119
>sp|B4PL68|NCBP2_DROYA Nuclear cap-binding protein subunit 2 OS=Drosophila yakuba GN=Cbp20
PE=3 SV=1
Length = 154
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE 156
S ++ E+ DS ++YVGN+ + T E++ + F CG V + + DK+ + P GF +VE
Sbjct: 18 SRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVE 77
Query: 157 FVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ + A+ +N T L R ++V I G + RG+
Sbjct: 78 YYIRSEAEAAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGK 119
>sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1
Length = 262
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEID 161
A E D R+++VGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 162 AVQNAL-LLNETELHGRQLKV 181
+V A+ LLN +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>sp|B4LZ88|NCB2B_DROVI Nuclear cap-binding protein subunit 2B OS=Drosophila virilis
GN=Cbp20-B PE=3 SV=1
Length = 154
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE 156
S ++ E+ DS ++YVGN+ + T E++ + F CG V + + DK+ + P GF +VE
Sbjct: 18 SRSEQERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRIIVMGLDKYKKTPCGFCFVE 77
Query: 157 FVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ + A+ +N T L R ++V + G + RG+
Sbjct: 78 YYTRAEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGRGK 119
>sp|B4M205|NCB2A_DROVI Nuclear cap-binding protein subunit 2-A OS=Drosophila virilis
GN=Cbp20-A PE=3 SV=1
Length = 154
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 98 SATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE 156
S + E+ DS ++YVGN+ + E++ + F CG V + + DK+ + P GF +VE
Sbjct: 18 SRFEQERSLRDSSTLYVGNLSFYTAEEQIHELFSRCGDVRMIVMGLDKYKKTPCGFCFVE 77
Query: 157 FVEIDAVQNAL-LLNETELHGRQLKVSAKRTNIPGMKQFRGR 197
+ + + A+ +N T L R ++V I G + RG+
Sbjct: 78 YYKRSEAEAAMRFVNGTRLDDRLIRVDWDAGFIEGRQYGRGK 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,811,107
Number of Sequences: 539616
Number of extensions: 3982394
Number of successful extensions: 51460
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 1309
Number of HSP's that attempted gapping in prelim test: 30571
Number of HSP's gapped (non-prelim): 11553
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)