Query 027515
Match_columns 222
No_of_seqs 235 out of 2074
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:04:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.1E-21 2.4E-26 149.6 16.2 87 106-192 31-119 (144)
2 KOG0113 U1 small nuclear ribon 99.8 9.2E-19 2E-23 143.2 12.9 94 106-201 98-193 (335)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.4E-18 9.5E-23 147.5 12.8 81 108-188 268-350 (352)
4 TIGR01659 sex-lethal sex-letha 99.8 1.8E-17 3.9E-22 143.2 14.7 81 107-187 191-275 (346)
5 PF00076 RRM_1: RNA recognitio 99.8 8E-18 1.7E-22 112.0 9.7 69 112-180 1-70 (70)
6 KOG0127 Nucleolar protein fibr 99.8 7.2E-18 1.6E-22 147.5 12.0 83 106-188 289-379 (678)
7 KOG0121 Nuclear cap-binding pr 99.7 5.8E-18 1.3E-22 122.8 7.8 82 107-188 34-117 (153)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.8E-17 3.9E-22 143.7 11.5 80 109-188 3-84 (352)
9 TIGR01659 sex-lethal sex-letha 99.7 3.5E-17 7.6E-22 141.4 10.8 82 105-186 103-186 (346)
10 TIGR01645 half-pint poly-U bin 99.7 7.2E-17 1.6E-21 147.0 12.5 79 107-185 105-185 (612)
11 KOG0149 Predicted RNA-binding 99.7 6E-17 1.3E-21 128.8 10.4 78 108-185 11-89 (247)
12 KOG0122 Translation initiation 99.7 7.7E-17 1.7E-21 128.8 9.6 81 107-187 187-269 (270)
13 PLN03120 nucleic acid binding 99.7 1.5E-16 3.3E-21 130.1 11.3 77 109-187 4-80 (260)
14 KOG0148 Apoptosis-promoting RN 99.7 1.9E-16 4E-21 128.3 10.7 79 105-188 160-239 (321)
15 PF14259 RRM_6: RNA recognitio 99.7 3E-16 6.6E-21 104.8 9.8 69 112-180 1-70 (70)
16 KOG0126 Predicted RNA-binding 99.7 9.5E-18 2.1E-22 128.6 1.2 81 105-185 31-113 (219)
17 TIGR01648 hnRNP-R-Q heterogene 99.7 1.1E-15 2.4E-20 138.9 14.1 73 108-187 232-307 (578)
18 KOG4207 Predicted splicing fac 99.7 4.4E-16 9.5E-21 121.7 9.2 80 108-187 12-93 (256)
19 TIGR01628 PABP-1234 polyadenyl 99.7 2E-15 4.3E-20 138.8 14.2 80 108-187 284-364 (562)
20 TIGR01645 half-pint poly-U bin 99.6 8.7E-16 1.9E-20 140.0 11.4 81 108-188 203-285 (612)
21 KOG0107 Alternative splicing f 99.6 3.1E-15 6.6E-20 114.2 10.8 78 108-189 9-87 (195)
22 KOG0130 RNA-binding protein RB 99.6 1E-15 2.3E-20 112.1 7.8 88 102-189 65-154 (170)
23 PLN03121 nucleic acid binding 99.6 2.5E-15 5.4E-20 121.3 10.5 77 108-186 4-80 (243)
24 PLN03213 repressor of silencin 99.6 1.4E-15 3E-20 132.2 9.6 76 108-186 9-87 (759)
25 TIGR01628 PABP-1234 polyadenyl 99.6 2.4E-15 5.3E-20 138.2 11.5 77 111-187 2-80 (562)
26 KOG0148 Apoptosis-promoting RN 99.6 1.3E-15 2.8E-20 123.4 8.5 81 108-188 61-143 (321)
27 TIGR01622 SF-CC1 splicing fact 99.6 2.8E-15 6.1E-20 134.4 11.2 82 106-187 86-168 (457)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.6 6.8E-15 1.5E-19 133.6 12.6 80 108-187 294-375 (509)
29 TIGR01622 SF-CC1 splicing fact 99.6 5.3E-15 1.2E-19 132.6 11.0 78 109-186 186-265 (457)
30 smart00362 RRM_2 RNA recogniti 99.6 9.1E-15 2E-19 96.5 9.4 71 111-182 1-72 (72)
31 KOG0114 Predicted RNA-binding 99.6 5.4E-15 1.2E-19 103.6 8.4 78 108-187 17-95 (124)
32 TIGR01648 hnRNP-R-Q heterogene 99.6 1.1E-14 2.3E-19 132.6 11.6 79 107-185 56-136 (578)
33 KOG0125 Ataxin 2-binding prote 99.6 9.5E-15 2.1E-19 121.2 10.0 82 106-188 93-175 (376)
34 KOG0117 Heterogeneous nuclear 99.6 6.4E-15 1.4E-19 126.5 9.2 86 106-191 80-168 (506)
35 KOG0111 Cyclophilin-type pepti 99.6 2.1E-15 4.5E-20 119.0 5.1 82 107-188 8-91 (298)
36 KOG0105 Alternative splicing f 99.6 1.2E-14 2.7E-19 111.9 9.2 79 107-187 4-83 (241)
37 COG0724 RNA-binding proteins ( 99.6 2.2E-14 4.7E-19 118.1 10.2 77 109-185 115-193 (306)
38 KOG0145 RNA-binding protein EL 99.5 2.3E-14 4.9E-19 115.8 8.9 82 107-188 39-122 (360)
39 smart00360 RRM RNA recognition 99.5 5.3E-14 1.2E-18 92.4 8.5 69 114-182 1-71 (71)
40 cd00590 RRM RRM (RNA recogniti 99.5 1.3E-13 2.9E-18 91.3 10.0 73 111-183 1-74 (74)
41 KOG0108 mRNA cleavage and poly 99.5 4.7E-14 1E-18 124.1 9.3 79 110-188 19-99 (435)
42 KOG4209 Splicing factor RNPS1, 99.5 5.4E-14 1.2E-18 114.8 9.0 156 59-214 48-209 (231)
43 KOG0131 Splicing factor 3b, su 99.5 2.5E-14 5.4E-19 109.9 5.5 78 108-185 8-87 (203)
44 KOG0127 Nucleolar protein fibr 99.5 1.2E-13 2.6E-18 121.3 9.4 81 108-188 116-197 (678)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.7E-13 3.8E-18 123.8 10.4 74 109-187 2-78 (481)
46 KOG0117 Heterogeneous nuclear 99.5 2.1E-13 4.6E-18 117.3 9.9 73 108-187 258-331 (506)
47 KOG0146 RNA-binding protein ET 99.5 6.1E-14 1.3E-18 113.7 6.1 87 102-188 278-366 (371)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.8E-13 6.1E-18 122.4 11.0 77 107-187 273-351 (481)
49 KOG0124 Polypyrimidine tract-b 99.5 6.5E-14 1.4E-18 117.9 5.7 78 107-184 111-190 (544)
50 KOG0116 RasGAP SH3 binding pro 99.5 6.8E-13 1.5E-17 116.2 11.6 82 109-190 288-370 (419)
51 KOG0144 RNA-binding protein CU 99.4 1.3E-13 2.8E-18 118.2 5.9 85 107-191 122-210 (510)
52 KOG0415 Predicted peptidyl pro 99.4 1.6E-12 3.4E-17 109.2 11.1 80 107-186 237-318 (479)
53 smart00361 RRM_1 RNA recogniti 99.4 1.9E-12 4.2E-17 86.6 8.0 60 123-182 2-70 (70)
54 PF13893 RRM_5: RNA recognitio 99.4 2.3E-12 5E-17 82.3 8.0 55 126-184 1-56 (56)
55 TIGR01642 U2AF_lg U2 snRNP aux 99.4 2.6E-12 5.6E-17 116.7 10.6 78 104-186 170-259 (509)
56 KOG0147 Transcriptional coacti 99.4 1E-12 2.2E-17 115.7 6.0 78 109-186 278-357 (549)
57 KOG4212 RNA-binding protein hn 99.3 5E-12 1.1E-16 108.7 9.8 78 109-186 44-123 (608)
58 KOG0144 RNA-binding protein CU 99.3 2.3E-12 5.1E-17 110.5 7.7 82 107-188 32-118 (510)
59 KOG4206 Spliceosomal protein s 99.3 5.1E-12 1.1E-16 100.4 8.3 78 109-188 9-91 (221)
60 KOG0109 RNA-binding protein LA 99.3 2E-12 4.2E-17 106.1 6.0 71 110-187 3-74 (346)
61 KOG0145 RNA-binding protein EL 99.3 1E-11 2.2E-16 100.5 9.6 81 107-187 276-358 (360)
62 KOG0153 Predicted RNA-binding 99.3 8.5E-12 1.8E-16 104.5 9.2 83 101-188 220-304 (377)
63 KOG4208 Nucleolar RNA-binding 99.3 6.6E-12 1.4E-16 98.5 7.6 82 105-186 45-129 (214)
64 KOG0132 RNA polymerase II C-te 99.3 7.1E-12 1.5E-16 114.1 7.7 78 105-187 417-495 (894)
65 KOG0123 Polyadenylate-binding 99.3 1.5E-11 3.3E-16 107.1 8.4 75 111-187 78-153 (369)
66 KOG4661 Hsp27-ERE-TATA-binding 99.2 3.5E-11 7.7E-16 106.5 9.6 82 108-189 404-487 (940)
67 KOG0131 Splicing factor 3b, su 99.2 1.3E-11 2.8E-16 95.1 5.8 82 106-187 93-177 (203)
68 KOG4205 RNA-binding protein mu 99.2 3.3E-11 7.2E-16 102.0 7.1 81 108-188 96-177 (311)
69 KOG0110 RNA-binding protein (R 99.2 1.4E-11 2.9E-16 111.4 4.9 80 109-188 613-694 (725)
70 KOG4205 RNA-binding protein mu 99.2 2.8E-11 6.1E-16 102.5 5.1 81 108-188 5-86 (311)
71 KOG0123 Polyadenylate-binding 99.2 1E-10 2.2E-15 101.9 8.1 74 110-188 2-76 (369)
72 KOG0109 RNA-binding protein LA 99.2 5.3E-11 1.2E-15 97.7 5.9 76 106-188 75-151 (346)
73 KOG0146 RNA-binding protein ET 99.1 9.9E-11 2.2E-15 95.2 6.6 81 108-188 18-102 (371)
74 KOG0110 RNA-binding protein (R 99.1 1.8E-10 4E-15 104.2 8.6 75 111-185 517-596 (725)
75 KOG0151 Predicted splicing reg 99.1 4.7E-10 1E-14 101.6 10.1 82 105-186 170-256 (877)
76 KOG1548 Transcription elongati 99.1 4.8E-10 1E-14 94.1 9.3 80 107-186 132-220 (382)
77 KOG0533 RRM motif-containing p 99.1 1.4E-09 2.9E-14 89.0 11.1 80 107-186 81-161 (243)
78 KOG4212 RNA-binding protein hn 99.0 5.4E-10 1.2E-14 96.4 7.4 79 102-184 529-608 (608)
79 KOG1457 RNA binding protein (c 99.0 1.1E-08 2.3E-13 81.5 12.1 85 105-189 30-120 (284)
80 KOG0124 Polypyrimidine tract-b 99.0 1.4E-09 2.9E-14 92.1 7.5 80 108-187 209-290 (544)
81 KOG0106 Alternative splicing f 99.0 1.4E-09 3.1E-14 87.1 6.3 72 110-188 2-74 (216)
82 KOG0226 RNA-binding proteins [ 98.8 3.1E-09 6.7E-14 86.0 4.6 82 104-185 185-268 (290)
83 PF04059 RRM_2: RNA recognitio 98.8 6.1E-08 1.3E-12 68.5 9.0 76 110-185 2-85 (97)
84 KOG4211 Splicing factor hnRNP- 98.7 7.8E-08 1.7E-12 84.3 9.8 79 107-188 8-87 (510)
85 KOG4211 Splicing factor hnRNP- 98.7 1E-07 2.3E-12 83.5 9.5 78 107-184 101-179 (510)
86 KOG4454 RNA binding protein (R 98.7 6.5E-09 1.4E-13 82.5 1.8 77 108-185 8-85 (267)
87 KOG4660 Protein Mei2, essentia 98.7 3.6E-08 7.7E-13 87.6 6.2 75 102-180 68-143 (549)
88 KOG4210 Nuclear localization s 98.7 2.1E-08 4.5E-13 84.6 4.4 82 108-189 183-266 (285)
89 KOG0147 Transcriptional coacti 98.7 1.1E-08 2.3E-13 90.6 2.5 86 100-185 170-256 (549)
90 KOG1995 Conserved Zn-finger pr 98.6 8E-08 1.7E-12 81.4 7.4 83 106-188 63-155 (351)
91 KOG3152 TBP-binding protein, a 98.6 5.1E-08 1.1E-12 79.1 4.4 71 108-178 73-157 (278)
92 KOG4849 mRNA cleavage factor I 98.5 4.4E-07 9.6E-12 76.7 7.9 77 107-183 78-158 (498)
93 KOG0120 Splicing factor U2AF, 98.5 9.3E-08 2E-12 85.3 4.0 79 108-186 288-368 (500)
94 KOG1190 Polypyrimidine tract-b 98.5 1.3E-06 2.7E-11 75.3 10.6 75 109-187 297-373 (492)
95 PF11608 Limkain-b1: Limkain b 98.4 1.5E-06 3.2E-11 59.2 7.7 67 110-185 3-75 (90)
96 COG5175 MOT2 Transcriptional r 98.3 6.2E-06 1.3E-10 69.6 9.2 80 107-186 112-202 (480)
97 KOG0106 Alternative splicing f 98.2 3E-06 6.5E-11 68.1 5.3 72 106-184 96-168 (216)
98 KOG1365 RNA-binding protein Fu 98.2 2.8E-06 6.1E-11 72.7 5.1 81 106-186 277-361 (508)
99 PF08777 RRM_3: RNA binding mo 98.1 1E-05 2.3E-10 58.2 7.0 69 110-183 2-76 (105)
100 KOG4206 Spliceosomal protein s 98.1 1.8E-05 3.8E-10 63.4 7.6 77 105-185 142-220 (221)
101 KOG4307 RNA binding protein RB 98.0 2.2E-05 4.7E-10 71.9 7.8 74 110-183 868-943 (944)
102 KOG1457 RNA binding protein (c 97.9 1.1E-05 2.4E-10 64.6 4.1 64 108-174 209-273 (284)
103 KOG1456 Heterogeneous nuclear 97.9 0.00011 2.4E-09 63.0 10.2 74 110-187 121-199 (494)
104 PF08952 DUF1866: Domain of un 97.9 8E-05 1.7E-09 56.2 8.4 73 108-187 26-107 (146)
105 KOG0128 RNA-binding protein SA 97.9 1.3E-05 2.8E-10 74.8 3.9 78 109-186 736-814 (881)
106 KOG1548 Transcription elongati 97.8 0.00012 2.6E-09 62.2 8.8 80 104-186 260-351 (382)
107 KOG2314 Translation initiation 97.8 0.00011 2.4E-09 65.9 8.2 76 108-183 57-140 (698)
108 PF14605 Nup35_RRM_2: Nup53/35 97.7 9.7E-05 2.1E-09 46.4 5.5 52 110-167 2-53 (53)
109 KOG1365 RNA-binding protein Fu 97.7 1.9E-05 4.2E-10 67.7 2.6 75 110-184 162-240 (508)
110 KOG1456 Heterogeneous nuclear 97.7 0.00022 4.8E-09 61.1 8.8 78 106-187 284-363 (494)
111 KOG0115 RNA-binding protein p5 97.6 0.00012 2.6E-09 59.8 5.9 75 110-184 32-111 (275)
112 KOG1855 Predicted RNA-binding 97.6 9.3E-05 2E-09 64.4 5.0 70 101-170 223-307 (484)
113 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00051 1.1E-08 48.9 7.3 77 109-186 6-91 (100)
114 KOG0129 Predicted RNA-binding 97.4 0.00075 1.6E-08 60.1 7.9 64 104-167 365-430 (520)
115 KOG0120 Splicing factor U2AF, 97.3 0.00077 1.7E-08 60.7 7.2 61 126-186 426-491 (500)
116 KOG1190 Polypyrimidine tract-b 97.3 0.00077 1.7E-08 58.5 6.8 78 107-187 412-491 (492)
117 KOG0105 Alternative splicing f 97.3 0.0032 6.9E-08 49.3 9.4 62 107-174 113-175 (241)
118 KOG0129 Predicted RNA-binding 97.2 0.0013 2.8E-08 58.7 7.5 65 104-169 254-326 (520)
119 KOG4676 Splicing factor, argin 97.2 0.00052 1.1E-08 59.2 4.9 77 109-185 7-87 (479)
120 KOG2202 U2 snRNP splicing fact 97.2 0.00018 3.9E-09 58.8 1.8 61 124-184 83-145 (260)
121 KOG4307 RNA binding protein RB 97.1 0.00026 5.7E-09 65.0 2.5 77 108-184 433-511 (944)
122 KOG1996 mRNA splicing factor [ 97.0 0.0026 5.6E-08 53.1 6.9 61 124-184 301-364 (378)
123 KOG0112 Large RNA-binding prot 96.9 0.00026 5.7E-09 66.7 0.7 81 104-184 367-448 (975)
124 KOG2416 Acinus (induces apopto 96.9 0.00079 1.7E-08 60.9 3.1 77 105-186 440-521 (718)
125 KOG0128 RNA-binding protein SA 96.8 5.7E-05 1.2E-09 70.6 -4.4 63 109-171 667-730 (881)
126 PF15023 DUF4523: Protein of u 96.5 0.013 2.9E-07 44.0 7.1 73 105-184 82-159 (166)
127 KOG2068 MOT2 transcription fac 96.4 0.001 2.2E-08 56.4 0.8 79 108-186 76-162 (327)
128 KOG2135 Proteins containing th 96.4 0.0019 4.1E-08 57.1 2.3 74 108-186 371-445 (526)
129 KOG0112 Large RNA-binding prot 96.4 0.0037 8.1E-08 59.2 4.2 76 106-186 452-530 (975)
130 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.0089 1.9E-07 47.0 4.7 79 108-186 6-97 (176)
131 PF07576 BRAP2: BRCA1-associat 95.6 0.15 3.3E-06 36.9 8.8 66 109-175 13-80 (110)
132 PF04847 Calcipressin: Calcipr 95.5 0.051 1.1E-06 43.0 6.4 61 122-187 8-71 (184)
133 KOG2193 IGF-II mRNA-binding pr 95.5 0.015 3.3E-07 50.9 3.6 73 110-188 2-77 (584)
134 PF11767 SET_assoc: Histone ly 95.4 0.11 2.3E-06 34.1 6.6 54 120-181 11-65 (66)
135 PF10309 DUF2414: Protein of u 95.3 0.15 3.3E-06 32.9 7.1 54 109-169 5-62 (62)
136 KOG2253 U1 snRNP complex, subu 95.2 0.013 2.8E-07 54.0 2.6 72 104-183 35-107 (668)
137 PF03880 DbpA: DbpA RNA bindin 95.1 0.13 2.8E-06 34.4 6.7 66 111-184 2-74 (74)
138 KOG4210 Nuclear localization s 94.7 0.022 4.9E-07 48.2 2.6 82 107-188 86-169 (285)
139 KOG4285 Mitotic phosphoprotein 94.5 0.16 3.4E-06 42.9 6.9 70 111-186 199-269 (350)
140 KOG1999 RNA polymerase II tran 94.4 0.92 2E-05 44.0 12.4 37 135-175 199-236 (1024)
141 KOG0804 Cytoplasmic Zn-finger 94.2 0.17 3.8E-06 44.8 6.9 67 109-176 74-142 (493)
142 KOG4483 Uncharacterized conser 93.9 0.57 1.2E-05 41.1 9.2 66 107-178 389-455 (528)
143 KOG4660 Protein Mei2, essentia 93.8 0.094 2E-06 47.5 4.5 78 109-186 388-472 (549)
144 PF10446 DUF2457: Protein of u 93.4 0.043 9.4E-07 48.5 1.8 6 110-115 192-197 (458)
145 PF08675 RNA_bind: RNA binding 93.3 0.49 1.1E-05 32.4 6.3 53 110-170 10-63 (87)
146 PRK11634 ATP-dependent RNA hel 91.7 2.5 5.5E-05 39.9 11.2 69 111-187 488-563 (629)
147 KOG4574 RNA-binding protein (c 91.3 0.15 3.2E-06 48.6 2.5 72 111-187 300-374 (1007)
148 PF10446 DUF2457: Protein of u 90.8 0.17 3.8E-06 44.8 2.4 6 116-121 188-193 (458)
149 KOG2318 Uncharacterized conser 90.2 1.3 2.8E-05 40.7 7.3 79 106-184 171-305 (650)
150 KOG2591 c-Mpl binding protein, 90.1 0.55 1.2E-05 42.9 5.0 73 105-183 171-248 (684)
151 KOG4676 Splicing factor, argin 89.7 0.039 8.4E-07 48.0 -2.5 66 108-176 150-215 (479)
152 KOG4019 Calcineurin-mediated s 89.5 0.67 1.5E-05 36.3 4.4 76 109-189 10-92 (193)
153 KOG2193 IGF-II mRNA-binding pr 88.6 0.043 9.4E-07 48.2 -3.0 75 109-185 80-155 (584)
154 PF04147 Nop14: Nop14-like fam 87.5 1.4 3E-05 43.1 6.1 21 112-134 419-439 (840)
155 KOG4454 RNA binding protein (R 87.3 0.25 5.4E-06 40.0 0.8 65 108-172 79-148 (267)
156 KOG4410 5-formyltetrahydrofola 85.5 3.1 6.7E-05 35.1 6.3 47 110-160 331-377 (396)
157 smart00596 PRE_C2HC PRE_C2HC d 85.3 1.6 3.5E-05 28.7 3.7 61 124-186 2-64 (69)
158 KOG4213 RNA-binding protein La 81.5 3.5 7.5E-05 32.4 4.8 72 105-180 107-180 (205)
159 PF03468 XS: XS domain; Inter 81.2 4.6 0.0001 29.4 5.2 59 111-171 10-78 (116)
160 PF10567 Nab6_mRNP_bdg: RNA-re 79.8 2.8 6E-05 35.5 4.0 76 109-184 15-105 (309)
161 PF07530 PRE_C2HC: Associated 78.7 5.3 0.00012 26.2 4.4 62 124-187 2-65 (68)
162 KOG2295 C2H2 Zn-finger protein 78.6 0.27 5.9E-06 44.7 -2.4 70 109-178 231-302 (648)
163 PF15513 DUF4651: Domain of un 77.7 5.9 0.00013 25.5 4.1 21 124-144 9-29 (62)
164 COG0724 RNA-binding proteins ( 73.9 4.2 9.1E-05 32.6 3.6 61 106-166 222-283 (306)
165 KOG4365 Uncharacterized conser 69.2 0.74 1.6E-05 40.9 -1.9 76 110-186 4-81 (572)
166 KOG2187 tRNA uracil-5-methyltr 68.9 6.5 0.00014 36.0 3.8 40 149-188 62-102 (534)
167 KOG1295 Nonsense-mediated deca 65.9 8 0.00017 33.9 3.7 66 109-174 7-77 (376)
168 PF12253 CAF1A: Chromatin asse 63.7 6.6 0.00014 26.5 2.2 6 11-16 53-58 (77)
169 PF02724 CDC45: CDC45-like pro 61.9 18 0.00039 34.2 5.6 11 124-134 337-347 (622)
170 KOG2891 Surface glycoprotein [ 59.9 6.8 0.00015 33.0 2.1 66 109-174 149-247 (445)
171 KOG4008 rRNA processing protei 59.5 8.8 0.00019 31.5 2.6 33 107-139 38-70 (261)
172 COG5193 LHP1 La protein, small 59.3 4.1 8.9E-05 35.9 0.8 59 109-167 174-243 (438)
173 PRK14548 50S ribosomal protein 58.1 52 0.0011 22.5 5.9 54 112-167 23-78 (84)
174 KOG4364 Chromatin assembly fac 54.8 19 0.00042 34.0 4.3 29 2-30 522-550 (811)
175 KOG0156 Cytochrome P450 CYP2 s 53.6 27 0.00058 32.1 5.1 59 113-179 36-97 (489)
176 PF09707 Cas_Cas2CT1978: CRISP 50.8 34 0.00073 23.6 4.1 47 110-158 26-72 (86)
177 COG0030 KsgA Dimethyladenosine 48.2 28 0.00061 29.2 4.0 34 109-142 95-128 (259)
178 PF07292 NID: Nmi/IFP 35 domai 42.5 37 0.0008 23.5 3.2 32 153-184 1-34 (88)
179 PF00276 Ribosomal_L23: Riboso 42.4 1E+02 0.0023 21.2 5.6 33 112-144 22-56 (91)
180 PF00398 RrnaAD: Ribosomal RNA 39.6 37 0.00079 28.2 3.5 29 108-136 96-126 (262)
181 PF03439 Spt5-NGN: Early trans 39.1 1E+02 0.0022 20.8 5.0 36 135-174 33-69 (84)
182 KOG3702 Nuclear polyadenylated 38.3 16 0.00035 34.3 1.2 72 110-181 512-584 (681)
183 KOG3003 Molecular chaperone of 38.1 72 0.0016 26.2 4.7 50 121-182 162-225 (236)
184 PF05918 API5: Apoptosis inhib 35.8 12 0.00026 34.8 0.0 17 59-75 375-391 (556)
185 PF05189 RTC_insert: RNA 3'-te 35.6 75 0.0016 22.2 4.1 49 110-158 11-65 (103)
186 PRK11558 putative ssRNA endonu 34.7 75 0.0016 22.4 3.8 48 110-159 28-75 (97)
187 PTZ00031 ribosomal protein L2; 34.7 14 0.0003 31.7 0.2 29 108-136 157-185 (317)
188 KOG3130 Uncharacterized conser 34.5 30 0.00065 30.7 2.2 16 158-173 416-432 (514)
189 COG5638 Uncharacterized conser 30.9 53 0.0012 29.4 3.1 37 107-143 144-185 (622)
190 PRK11230 glycolate oxidase sub 30.3 1.5E+02 0.0032 27.3 6.1 48 122-169 202-254 (499)
191 PF02714 DUF221: Domain of unk 29.4 59 0.0013 27.7 3.2 32 153-186 1-33 (325)
192 PRK00274 ksgA 16S ribosomal RN 28.8 80 0.0017 26.3 3.8 22 111-132 107-128 (272)
193 COG5353 Uncharacterized protei 28.5 2.7E+02 0.0059 21.3 6.5 53 109-161 87-153 (161)
194 PRK11901 hypothetical protein; 27.6 3.2E+02 0.0069 23.8 7.1 59 108-171 244-306 (327)
195 PF06613 KorB_C: KorB C-termin 26.3 72 0.0016 20.3 2.3 22 138-159 19-40 (60)
196 TIGR01873 cas_CT1978 CRISPR-as 26.2 58 0.0013 22.5 2.1 48 110-159 26-74 (87)
197 PRK12280 rplW 50S ribosomal pr 25.1 2.8E+02 0.006 21.4 5.8 33 111-143 23-57 (158)
198 PTZ00338 dimethyladenosine tra 25.1 85 0.0018 26.7 3.3 28 111-138 103-130 (294)
199 PF11411 DNA_ligase_IV: DNA li 24.4 58 0.0013 18.5 1.5 16 119-134 19-34 (36)
200 CHL00052 rpl2 ribosomal protei 23.6 15 0.00032 31.0 -1.5 30 107-136 123-152 (273)
201 TIGR00755 ksgA dimethyladenosi 23.2 1E+02 0.0022 25.2 3.5 24 111-134 96-119 (253)
202 PHA01632 hypothetical protein 22.3 93 0.002 19.5 2.2 21 112-132 19-39 (64)
203 PTZ00415 transmission-blocking 21.2 85 0.0019 33.6 2.9 42 18-59 154-195 (2849)
204 PF15407 Spo7_2_N: Sporulation 21.0 46 0.001 21.7 0.7 28 104-131 22-49 (67)
205 TIGR00387 glcD glycolate oxida 21.0 2.4E+02 0.0053 25.0 5.6 49 119-167 142-194 (413)
206 PF04026 SpoVG: SpoVG; InterP 21.0 1.8E+02 0.004 19.8 3.8 44 135-184 2-48 (84)
207 PF05285 SDA1: SDA1; InterPro 20.6 2.2E+02 0.0047 24.6 5.0 13 118-130 228-240 (324)
208 PF04050 Upf2: Up-frameshift s 20.5 1.2E+02 0.0026 23.4 3.2 10 134-143 119-128 (170)
209 PF11823 DUF3343: Protein of u 20.0 1.3E+02 0.0027 19.6 2.7 25 151-175 2-27 (73)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.89 E-value=1.1e-21 Score=149.55 Aligned_cols=87 Identities=21% Similarity=0.506 Sum_probs=80.0
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
....++|||+|||+.+|+++|+.+|.+||.|.+|+|+.++ +++++|||||+|.+.++|++|| .||++.|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3457789999999999999999999999999999999998 8999999999999999999999 8999999999999999
Q ss_pred ccCCCCCCC
Q 027515 184 KRTNIPGMK 192 (222)
Q Consensus 184 a~~~~~~~~ 192 (222)
++.+.....
T Consensus 111 a~~~~~~~~ 119 (144)
T PLN03134 111 ANDRPSAPR 119 (144)
T ss_pred CCcCCCCCC
Confidence 987654333
No 2
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=9.2e-19 Score=143.24 Aligned_cols=94 Identities=21% Similarity=0.498 Sum_probs=85.6
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
..+-+||||+.|++.|++..|+..|..||+|..|+||.+. ||+++|||||+|....++..|. ..+|+.|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3567899999999999999999999999999999999998 9999999999999999999999 8999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 027515 184 KRTNIPGMKQFRGRRPNT 201 (222)
Q Consensus 184 a~~~~~~~~~~~~~~~~~ 201 (222)
-+.+. +++|.+++.|+
T Consensus 178 ERgRT--vkgW~PRRLGG 193 (335)
T KOG0113|consen 178 ERGRT--VKGWLPRRLGG 193 (335)
T ss_pred ccccc--ccccccccccC
Confidence 87664 55777776543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=4.4e-18 Score=147.53 Aligned_cols=81 Identities=30% Similarity=0.368 Sum_probs=76.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
.+++|||+|||+.+++++|+.+|++||.|.+|+|++++ |++++|||||.|.+.++|.+|| .|||..|+||.|+|.++.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999998 8999999999999999999999 899999999999999997
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 654
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=1.8e-17 Score=143.16 Aligned_cols=81 Identities=28% Similarity=0.503 Sum_probs=75.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCC--eeeEEe
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHG--RQLKVS 182 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~g--r~i~v~ 182 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|++++ +++++|||||+|.+.++|.+|| .||++.|.+ ++|+|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999998 8999999999999999999999 999999866 789999
Q ss_pred eccCC
Q 027515 183 AKRTN 187 (222)
Q Consensus 183 ~a~~~ 187 (222)
++...
T Consensus 271 ~a~~~ 275 (346)
T TIGR01659 271 LAEEH 275 (346)
T ss_pred ECCcc
Confidence 98764
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.76 E-value=8e-18 Score=111.96 Aligned_cols=69 Identities=32% Similarity=0.679 Sum_probs=66.6
Q ss_pred EEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 112 vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
|||+|||+.+|+++|+.+|++||.|..+.++.+.+++++|||||.|.+.++|.+|+ .|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999998878899999999999999999999 7999999999986
No 6
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=7.2e-18 Score=147.53 Aligned_cols=83 Identities=34% Similarity=0.524 Sum_probs=75.7
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-Hc-----CC-ceeCCe
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LL-----NE-TELHGR 177 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l-----~g-~~l~gr 177 (222)
.....||||+||||++|++.|..+|++||.|.++.||.++ |++++|+|||.|.+...|..|| .. .| ..|.||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 3456899999999999999999999999999999999999 9999999999999999999999 44 24 788999
Q ss_pred eeEEeeccCCC
Q 027515 178 QLKVSAKRTNI 188 (222)
Q Consensus 178 ~i~v~~a~~~~ 188 (222)
.|+|.+|.++.
T Consensus 369 ~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 369 LLKVTLAVTRK 379 (678)
T ss_pred EEeeeeccchH
Confidence 99999997764
No 7
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=5.8e-18 Score=122.78 Aligned_cols=82 Identities=28% Similarity=0.571 Sum_probs=76.5
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
..++||||+||++.+|+++|.++|+++|.|..|.+-.++ +..++|||||+|.+.++|..|| -++++.|..++|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 458899999999999999999999999999999998998 7899999999999999999999 89999999999999987
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
-.-.
T Consensus 114 ~GF~ 117 (153)
T KOG0121|consen 114 AGFV 117 (153)
T ss_pred ccch
Confidence 5443
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=1.8e-17 Score=143.69 Aligned_cols=80 Identities=28% Similarity=0.481 Sum_probs=76.1
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
..+|||+|||+.+|+++|+.+|++||+|.+|+|++++ +|+++|||||+|.+.++|.+|| .|||..|.|+.|+|.++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5689999999999999999999999999999999998 8999999999999999999999 8999999999999999875
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 43
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=3.5e-17 Score=141.36 Aligned_cols=82 Identities=27% Similarity=0.392 Sum_probs=76.9
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.....++|||+|||+++|+++|+.+|+.||.|..|+|+.++ +++++|||||+|.+.++|.+|| .|+++.|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34467899999999999999999999999999999999997 8999999999999999999999 899999999999999
Q ss_pred eccC
Q 027515 183 AKRT 186 (222)
Q Consensus 183 ~a~~ 186 (222)
++++
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8754
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.71 E-value=7.2e-17 Score=147.00 Aligned_cols=79 Identities=29% Similarity=0.518 Sum_probs=75.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+++++|+.+|.+||.|.+|+|+.++ +++++|||||+|.+.++|.+|| .|||+.|+||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999999999999999999998 8999999999999999999999 89999999999999865
Q ss_pred c
Q 027515 185 R 185 (222)
Q Consensus 185 ~ 185 (222)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 11
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=6e-17 Score=128.84 Aligned_cols=78 Identities=23% Similarity=0.465 Sum_probs=72.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
.-.+||||+|+|.|+.+.|+.+|.+||.|..+.|+.|+ ||++|||+||+|.+.++|.+|+.-..-.|+||+.+|.+|-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 34679999999999999999999999999999999999 8999999999999999999999777789999999998873
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=7.7e-17 Score=128.76 Aligned_cols=81 Identities=27% Similarity=0.419 Sum_probs=77.7
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|-|.|||.++++.+|+++|.+||.|.+|.|.+++ ||.+||||||.|.++++|.+|| .|||+-++.-.|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 366789999999999999999999999999999999999 9999999999999999999999 99999999999999999
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 13
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.70 E-value=1.5e-16 Score=130.11 Aligned_cols=77 Identities=21% Similarity=0.426 Sum_probs=72.0
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccCC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTN 187 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~~ 187 (222)
.++|||+|||+.+|+.+|+.||+.||.|.+|.|+.++ .++|||||+|.+..+|..||.|+|..|.||.|+|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 5799999999999999999999999999999999876 2579999999999999999999999999999999998754
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.9e-16 Score=128.29 Aligned_cols=79 Identities=29% Similarity=0.545 Sum_probs=73.2
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|++..+|++.|+..|++||+|..|||..+ +|||||.|.+.++|..|| .+|+..|+|+.+++.|
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 3456899999999999999999999999999999999854 899999999999999999 9999999999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
-+...
T Consensus 235 GKe~~ 239 (321)
T KOG0148|consen 235 GKEGD 239 (321)
T ss_pred cccCC
Confidence 87653
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.69 E-value=3e-16 Score=104.81 Aligned_cols=69 Identities=38% Similarity=0.729 Sum_probs=63.9
Q ss_pred EEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 112 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 112 vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
|||+|||+.++.++|+.+|+.||.|..+++..++.+.++|+|||+|.+.++|.+|+ .+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877899999999999999999999 7888999999985
No 16
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=9.5e-18 Score=128.55 Aligned_cols=81 Identities=28% Similarity=0.502 Sum_probs=75.5
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.-..+.-|||+|||+..|+.+|..+|++||.|..|.|++++ ||+++||||++|.+..+.-.|+ .|||+.|.||.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 34457789999999999999999999999999999999998 9999999999999999999999 999999999999997
Q ss_pred ecc
Q 027515 183 AKR 185 (222)
Q Consensus 183 ~a~ 185 (222)
..-
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 643
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.67 E-value=1.1e-15 Score=138.94 Aligned_cols=73 Identities=27% Similarity=0.501 Sum_probs=68.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhC--CCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSC--GTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
..++|||+|||+.+|+++|+.+|++| |.|.+|+++ ++||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 35789999999999999999999999 999999876 679999999999999999 89999999999999999
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
++.
T Consensus 305 kp~ 307 (578)
T TIGR01648 305 KPV 307 (578)
T ss_pred cCC
Confidence 764
No 18
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.66 E-value=4.4e-16 Score=121.71 Aligned_cols=80 Identities=31% Similarity=0.574 Sum_probs=75.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...+|-|-||.+-||.++|+.+|.+||.|..|.|+.++ |+.++|||||.|....+|+.|+ +|+|..|+|+.|+|+.|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35679999999999999999999999999999999999 9999999999999999999999 999999999999999997
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
.-
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 53
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.65 E-value=2e-15 Score=138.78 Aligned_cols=80 Identities=25% Similarity=0.517 Sum_probs=76.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
...+|||+||++.+|+++|+.+|++||.|.+|+|+.+.+++++|||||+|.+.++|.+|| .|||..|+|++|.|.+|..
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 467899999999999999999999999999999999988999999999999999999999 9999999999999999876
Q ss_pred C
Q 027515 187 N 187 (222)
Q Consensus 187 ~ 187 (222)
+
T Consensus 364 k 364 (562)
T TIGR01628 364 K 364 (562)
T ss_pred c
Confidence 4
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=8.7e-16 Score=139.96 Aligned_cols=81 Identities=20% Similarity=0.360 Sum_probs=76.4
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
..++|||+|||+.+++++|+.+|+.||.|.+|+|++++ +++++|||||.|.+.++|.+|| .||++.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34689999999999999999999999999999999998 7899999999999999999999 999999999999999998
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
+.+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 21
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=3.1e-15 Score=114.20 Aligned_cols=78 Identities=26% Similarity=0.523 Sum_probs=71.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
..+.|||+||+..+|..+|..+|..||+|.+|-|.. .+.|||||+|.++.+|..|+ .|+|..|+|..|+|.++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 367899999999999999999999999999988775 35899999999999999999 9999999999999999976
Q ss_pred CCC
Q 027515 187 NIP 189 (222)
Q Consensus 187 ~~~ 189 (222)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 653
No 22
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1e-15 Score=112.08 Aligned_cols=88 Identities=27% Similarity=0.453 Sum_probs=81.8
Q ss_pred ccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeee
Q 027515 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQL 179 (222)
Q Consensus 102 ~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i 179 (222)
.++....+..|||.++-..+|+++|...|..||.|+.|+|..++ ||-.||||+|+|.+...|++|| .+||..|.|++|
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 34455678999999999999999999999999999999999998 9999999999999999999999 999999999999
Q ss_pred EEeeccCCCC
Q 027515 180 KVSAKRTNIP 189 (222)
Q Consensus 180 ~v~~a~~~~~ 189 (222)
.|.|+-.+.|
T Consensus 145 ~VDw~Fv~gp 154 (170)
T KOG0130|consen 145 SVDWCFVKGP 154 (170)
T ss_pred eEEEEEecCC
Confidence 9999976654
No 23
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2.5e-15 Score=121.30 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=71.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
.+++|||+||++.+|+.+|++||+.||.|.+|+|+++. ..+|||||+|.++.++..||.|+|..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 46899999999999999999999999999999999874 456899999999999999999999999999999988653
No 24
>PLN03213 repressor of silencing 3; Provisional
Probab=99.63 E-value=1.4e-15 Score=132.18 Aligned_cols=76 Identities=20% Similarity=0.422 Sum_probs=69.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCH--HHHHHHH-HcCCceeCCeeeEEeec
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEI--DAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~--~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...+||||||++.+|+++|+.+|+.||.|.+|.|++ .+| ||||||+|.+. ..+.+|| .|||..++||.|+|..|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 456899999999999999999999999999999992 266 99999999987 7899999 99999999999999988
Q ss_pred cC
Q 027515 185 RT 186 (222)
Q Consensus 185 ~~ 186 (222)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 65
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.62 E-value=2.4e-15 Score=138.23 Aligned_cols=77 Identities=26% Similarity=0.469 Sum_probs=73.7
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCC
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTN 187 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~ 187 (222)
+|||+|||+++|+.+|+.+|++||.|.+|+|+++. |++++|||||+|.+.++|.+|| .+|+..|.|+.|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 69999999999999999999999999999999998 7999999999999999999999 89999999999999998643
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.3e-15 Score=123.40 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=77.7
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
....|||+.|...++-+.|++.|.+||.|..++|++|. |+++|||+||.|.++.+|+.|| .|||..|++|.|+-.||.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 36689999999999999999999999999999999998 8999999999999999999999 999999999999999998
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
.++
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 776
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=2.8e-15 Score=134.44 Aligned_cols=82 Identities=29% Similarity=0.522 Sum_probs=76.9
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+.+|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+||.|+|..|.|++|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 4557899999999999999999999999999999999998 899999999999999999999999999999999999987
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 543
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.61 E-value=6.8e-15 Score=133.60 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=75.7
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
..++|||+|||+.+|+++|+.+|.+||.|..+.|+.+. +|.++|||||+|.+...|..|| .|||+.|+|+.|+|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45789999999999999999999999999999999997 8999999999999999999999 999999999999999986
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 53
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=5.3e-15 Score=132.63 Aligned_cols=78 Identities=32% Similarity=0.630 Sum_probs=74.7
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
.++|||+|||+.+|+++|+.+|++||.|..|.|+.+. +|+++|||||+|.+.+.|.+|| .|||..|.|+.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999999998 7899999999999999999999 8999999999999999763
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=99.60 E-value=9.1e-15 Score=96.46 Aligned_cols=71 Identities=38% Similarity=0.683 Sum_probs=66.7
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
+|||+|||..++..+|+.+|.+||.|..+.+..++ +.++|+|||.|.+...|..|+ .+++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998777 778999999999999999999 899999999999874
No 31
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=5.4e-15 Score=103.60 Aligned_cols=78 Identities=26% Similarity=0.393 Sum_probs=70.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
..+.|||+|||+.+|.+++.++|.+||.|..|+|-..+ .-+|.|||+|.+..+|.+|+ .|+|..+.++.|.|.+-.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 46789999999999999999999999999999985444 45999999999999999999 9999999999999998755
Q ss_pred C
Q 027515 187 N 187 (222)
Q Consensus 187 ~ 187 (222)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=1.1e-14 Score=132.56 Aligned_cols=79 Identities=27% Similarity=0.492 Sum_probs=73.2
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC-CeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH-GRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~-gr~i~v~~a 184 (222)
...++|||+|||+++++++|+.+|++||.|..|+|+++.+++++|||||+|.+.++|.+|| .||+..|. |+.|.|+.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3568999999999999999999999999999999999988999999999999999999999 89999885 888888766
Q ss_pred c
Q 027515 185 R 185 (222)
Q Consensus 185 ~ 185 (222)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 33
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=9.5e-15 Score=121.23 Aligned_cols=82 Identities=21% Similarity=0.384 Sum_probs=74.7
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
....++|+|.||||...+-||+.+|.+||+|.+|.|+.+.. .||||+||+|.+.++|.+|- .|||..|.||+|.|..|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 34567899999999999999999999999999999997752 47999999999999999999 99999999999999998
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
..+.
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 7653
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=6.4e-15 Score=126.54 Aligned_cols=86 Identities=23% Similarity=0.430 Sum_probs=79.1
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCcee-CCeeeEEe
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETEL-HGRQLKVS 182 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l-~gr~i~v~ 182 (222)
....+.|||+.||.++.+++|.-+|.+.|+|-.+||++++ +|.+||||||+|.+.+.|+.|| .||++.| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 3567899999999999999999999999999999999998 8999999999999999999999 9999998 59999999
Q ss_pred eccCCCCCC
Q 027515 183 AKRTNIPGM 191 (222)
Q Consensus 183 ~a~~~~~~~ 191 (222)
.+..+.+-+
T Consensus 160 ~Svan~RLF 168 (506)
T KOG0117|consen 160 VSVANCRLF 168 (506)
T ss_pred EeeecceeE
Confidence 887765433
No 35
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.1e-15 Score=119.04 Aligned_cols=82 Identities=28% Similarity=0.517 Sum_probs=78.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...+||||++|...+|+.-|...|-+||.|..|.++.+. +++++|||||+|.-.++|.+|| .||+..|.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 347899999999999999999999999999999999998 8999999999999999999999 99999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
++-+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 36
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.2e-14 Score=111.89 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=70.8
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||.++.+.+|..+|.+||.|..|.|...+ .+..||||+|.++.+|+.|| .-+|..+.|.+|+|.+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 457899999999999999999999999999999875332 34679999999999999999 899999999999999997
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=2.2e-14 Score=118.06 Aligned_cols=77 Identities=36% Similarity=0.729 Sum_probs=74.6
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
.++|||+|||+.+|+++|+.+|.+||.|..|+++.++ +++++|||||.|.+.+.|..|+ .+++..|.|++|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6899999999999999999999999999999999997 8999999999999999999999 999999999999999965
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.3e-14 Score=115.77 Aligned_cols=82 Identities=26% Similarity=0.446 Sum_probs=77.6
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
.....|.|.-||.++|.++|+.+|+..|.|.+|++++++ +|++.||+||.|-++.+|.+|| .|||..|..+.|+|.||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 345679999999999999999999999999999999999 9999999999999999999999 99999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
|+..
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 9764
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=5.3e-14 Score=92.36 Aligned_cols=69 Identities=43% Similarity=0.694 Sum_probs=65.1
Q ss_pred EeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 114 VGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 114 V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
|+|||..++.++|+.+|.+||.|..+.+..++ ++.++|+|||.|.+.+.|..|+ .+++..++|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999887 6899999999999999999999 899999999999874
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=1.3e-13 Score=91.27 Aligned_cols=73 Identities=40% Similarity=0.647 Sum_probs=68.4
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
+|||+|||+.++..+|+.+|..||.|..+.+...+.+.++|+|||.|.+.+.|..|+ .+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998876688999999999999999999 9999999999999864
No 41
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.52 E-value=4.7e-14 Score=124.06 Aligned_cols=79 Identities=32% Similarity=0.631 Sum_probs=76.4
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTN 187 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~ 187 (222)
+.|||||+|+.+++++|..+|+..|.|.+++++.|+ ||+++||||++|.+.+.|..|+ .|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 889999999999999999999999999999999999 8999999999999999999999 99999999999999999765
Q ss_pred C
Q 027515 188 I 188 (222)
Q Consensus 188 ~ 188 (222)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 42
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.52 E-value=5.4e-14 Score=114.76 Aligned_cols=156 Identities=35% Similarity=0.545 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC---CccCcccccccCCcEEEEeccCCCCCHHHHHHHhhhCCC
Q 027515 59 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSS---TSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGT 135 (222)
Q Consensus 59 d~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~ 135 (222)
++..++....+++..+..++.++....+.+...+.... ...............|||+|+.+.+|...+..+|..||.
T Consensus 48 ~i~~~~~~~~e~e~~i~~le~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~ 127 (231)
T KOG4209|consen 48 KISANYNRSSEKEWEITKLERMCPATVKPLMDLSLKAAVVVKEKFPERQKEVDAPSVWVGNVDFLVTLTKIELHFESCGG 127 (231)
T ss_pred ccchhhcccccchhhhHHHHhhchhhhhhhhhcccccchhhhhcchhhhhccCCceEEEeccccccccchhhheeeccCC
Confidence 44444444445555555666655555553333222211 122233345567889999999999999999999999999
Q ss_pred eeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccCCCCCCCCCCCCCC--CCCCCCCCCCCCC
Q 027515 136 VNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRP--NTFGFRGRRPFIP 212 (222)
Q Consensus 136 i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~~~~~~~~~~~~~~--~~~g~~~~~~~~~ 212 (222)
|..+.|+.++ +++++|||||.|.+...+..++.|++..|.|+.|.|.+.+.+.++.+...+.++ .+++++.+.++..
T Consensus 128 i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~~~pg~~~~~~~~~~~~~~~f~~~~~~~~ 207 (231)
T KOG4209|consen 128 INRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRTNVPGMGRSSPPRRTSPRWTFRLEWPPMH 207 (231)
T ss_pred ccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeeeecCCcCCCCCCcccCCCCccccccCCCC
Confidence 9999999999 688999999999999999999999999999999999999998887777666554 3455666555444
Q ss_pred CC
Q 027515 213 GV 214 (222)
Q Consensus 213 ~~ 214 (222)
.+
T Consensus 208 ~~ 209 (231)
T KOG4209|consen 208 QF 209 (231)
T ss_pred cc
Confidence 33
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.50 E-value=2.5e-14 Score=109.90 Aligned_cols=78 Identities=27% Similarity=0.501 Sum_probs=74.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...||||+||+..+++..|.++|-+.|+|.++++++++ +...+|||||+|.+.++|+-|| .||...|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46799999999999999999999999999999999999 8899999999999999999999 999999999999999886
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.2e-13 Score=121.32 Aligned_cols=81 Identities=25% Similarity=0.456 Sum_probs=76.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
...+|.|+||||.+...+|+.+|+.||.|..|.|++.+.|+-+|||||+|....+|..|| .+|++.|.||+|-|.||.+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 367899999999999999999999999999999998778888899999999999999999 9999999999999999976
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
+.
T Consensus 196 Kd 197 (678)
T KOG0127|consen 196 KD 197 (678)
T ss_pred cc
Confidence 53
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=1.7e-13 Score=123.77 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=68.3
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-H--cCCceeCCeeeEEeecc
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-L--LNETELHGRQLKVSAKR 185 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~--l~g~~l~gr~i~v~~a~ 185 (222)
+++|||+|||+.+|+++|+.+|++||.|.+|.|+. ++|||||+|.+.++|.+|| . +++..|.|+.|+|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 68999999999999999999999999999999984 4689999999999999999 4 57899999999999996
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
.+
T Consensus 77 ~~ 78 (481)
T TIGR01649 77 SQ 78 (481)
T ss_pred Cc
Confidence 54
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.1e-13 Score=117.25 Aligned_cols=73 Identities=27% Similarity=0.460 Sum_probs=68.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
.-+.|||+||+.+||++.|+++|++||.|.+|+.+ +-||||.|..+++|-+|+ .+||+.|.|..|.|.+|++
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecc-------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 34679999999999999999999999999999876 559999999999999999 9999999999999999987
Q ss_pred C
Q 027515 187 N 187 (222)
Q Consensus 187 ~ 187 (222)
.
T Consensus 331 ~ 331 (506)
T KOG0117|consen 331 V 331 (506)
T ss_pred h
Confidence 4
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=6.1e-14 Score=113.69 Aligned_cols=87 Identities=22% Similarity=0.354 Sum_probs=82.4
Q ss_pred ccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeee
Q 027515 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQL 179 (222)
Q Consensus 102 ~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i 179 (222)
..+..+.+|+|||-.||...+..+|...|-+||.|.+.++..|+ |.++|.|+||.|.++.+++.|| .+||+.|+-++|
T Consensus 278 qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 278 QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 35566789999999999999999999999999999999999999 9999999999999999999999 999999999999
Q ss_pred EEeeccCCC
Q 027515 180 KVSAKRTNI 188 (222)
Q Consensus 180 ~v~~a~~~~ 188 (222)
+|.+.|++.
T Consensus 358 KVQLKRPkd 366 (371)
T KOG0146|consen 358 KVQLKRPKD 366 (371)
T ss_pred hhhhcCccc
Confidence 999998875
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.47 E-value=2.8e-13 Score=122.42 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=71.0
Q ss_pred cCCcEEEEeccCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
..+++|||+|||+ .+|+++|+.+|++||.|.+|+|+.++ +|||||+|.+.++|..|| .|||..|.|++|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 4578999999998 69999999999999999999998753 799999999999999999 89999999999999998
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
+..
T Consensus 349 ~~~ 351 (481)
T TIGR01649 349 KQQ 351 (481)
T ss_pred ccc
Confidence 654
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=6.5e-14 Score=117.88 Aligned_cols=78 Identities=29% Similarity=0.525 Sum_probs=73.9
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
..-++||||.+.|.+.++.|+..|.+||+|++|.+..++ |+++||||||+|.-++.|+.|+ .+||..|+||.|+|...
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 346889999999999999999999999999999999998 9999999999999999999999 99999999999999743
No 50
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.45 E-value=6.8e-13 Score=116.18 Aligned_cols=82 Identities=33% Similarity=0.502 Sum_probs=71.7
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccCC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTN 187 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~~ 187 (222)
..+|||+|||++++..+|+.+|.+||.|+...|.... .+++.+||||+|.+..+++.||..+...|++++|.|...++.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 4569999999999999999999999999998887654 455559999999999999999977799999999999998875
Q ss_pred CCC
Q 027515 188 IPG 190 (222)
Q Consensus 188 ~~~ 190 (222)
..+
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 443
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.3e-13 Score=118.19 Aligned_cols=85 Identities=31% Similarity=0.490 Sum_probs=76.5
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCc-eeCC--eeeEEe
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNET-ELHG--RQLKVS 182 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~-~l~g--r~i~v~ 182 (222)
...++|||+-|+..+|+.+++.+|++||.|..|+|+++..+.+||||||.|.+++-|..|| .|||. ++.| .+|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 3478899999999999999999999999999999999999999999999999999999999 99985 4555 589999
Q ss_pred eccCCCCCC
Q 027515 183 AKRTNIPGM 191 (222)
Q Consensus 183 ~a~~~~~~~ 191 (222)
+|.+.++..
T Consensus 202 FADtqkdk~ 210 (510)
T KOG0144|consen 202 FADTQKDKD 210 (510)
T ss_pred ecccCCCch
Confidence 998876433
No 52
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.6e-12 Score=109.18 Aligned_cols=80 Identities=16% Similarity=0.396 Sum_probs=76.2
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
++...|||..|++-||.++|.-+|+.||+|.+|.|++++ ||.+..||||+|.+.+++++|. .|++..|..|+|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 456789999999999999999999999999999999998 9999999999999999999999 99999999999999987
Q ss_pred cC
Q 027515 185 RT 186 (222)
Q Consensus 185 ~~ 186 (222)
.+
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 54
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=1.9e-12 Score=86.59 Aligned_cols=60 Identities=25% Similarity=0.461 Sum_probs=53.9
Q ss_pred HHHHHHHhh----hCCCeeEEE-EeeCC-C--CCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 123 PEEVQQHFQ----SCGTVNRVT-ILTDK-F--GQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 123 ~~~L~~~F~----~~G~i~~v~-i~~~~-t--~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
+++|+.+|+ +||.|.+|. |+.++ + ++++|||||.|.+.++|.+|+ .|||..+.||.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467889998 999999995 66665 5 899999999999999999999 999999999999873
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=2.3e-12 Score=82.30 Aligned_cols=55 Identities=38% Similarity=0.706 Sum_probs=49.6
Q ss_pred HHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 126 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 126 L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
|+.+|++||.|..|.+.... +++|||+|.+.++|..|+ .|||..++|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999987543 699999999999999999 89999999999999986
No 55
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.38 E-value=2.6e-12 Score=116.75 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=65.3
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhC------------CCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCC
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSC------------GTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNE 171 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~------------G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g 171 (222)
......++|||+|||+.+|+++|+.||.+| +.|..+.+ ++.+|||||+|.+.++|..||.|+|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhcCCC
Confidence 344567899999999999999999999975 23344433 4568999999999999999999999
Q ss_pred ceeCCeeeEEeeccC
Q 027515 172 TELHGRQLKVSAKRT 186 (222)
Q Consensus 172 ~~l~gr~i~v~~a~~ 186 (222)
+.|.|+.|+|.....
T Consensus 245 ~~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 245 IIYSNVFLKIRRPHD 259 (509)
T ss_pred eEeeCceeEecCccc
Confidence 999999999986544
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.35 E-value=1e-12 Score=115.71 Aligned_cols=78 Identities=35% Similarity=0.628 Sum_probs=73.1
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
...|||+||-+++++..|+.+|.+||.|..|.+.++. ||+++||+||+|.+.++|.+|+ .|||+.|-||.|+|..-..
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 3349999999999999999999999999999999998 9999999999999999999999 9999999999999987543
No 57
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=5e-12 Score=108.72 Aligned_cols=78 Identities=33% Similarity=0.564 Sum_probs=73.5
Q ss_pred CcEEEEeccCCCCCHHHHHHHhh-hCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQ-SCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
.+.|||.|||+++...+|+.+|. +.|.|++|.|..+..|+++|||.|+|.+++.+++|+ .||.+.++||.|.|.....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999997 689999999999999999999999999999999999 9999999999999987654
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.3e-12 Score=110.53 Aligned_cols=82 Identities=20% Similarity=0.427 Sum_probs=73.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCce-eC--CeeeEE
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETE-LH--GRQLKV 181 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~-l~--gr~i~v 181 (222)
...-++||+-||..+++.+|+.+|.+||.|..|.|++|+ |+.++|||||.|.++++|.+|+ +||++. |- ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 445679999999999999999999999999999999999 8999999999999999999999 888754 43 468999
Q ss_pred eeccCCC
Q 027515 182 SAKRTNI 188 (222)
Q Consensus 182 ~~a~~~~ 188 (222)
++|..-.
T Consensus 112 k~Ad~E~ 118 (510)
T KOG0144|consen 112 KYADGER 118 (510)
T ss_pred cccchhh
Confidence 9986543
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.33 E-value=5.1e-12 Score=100.44 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=71.4
Q ss_pred CcEEEEeccCCCCCHHHHHH----HhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 109 SRSIYVGNVDYACTPEEVQQ----HFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~----~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
..||||.||+..+..++|+. +|++||.|..|... ++.+.+|-|||.|.+...|..|+ .|+|..+.|+.++|+|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 44999999999999999888 99999999887654 56788999999999999999999 9999999999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
|+++.
T Consensus 87 A~s~s 91 (221)
T KOG4206|consen 87 AKSDS 91 (221)
T ss_pred ccCcc
Confidence 98764
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.33 E-value=2e-12 Score=106.07 Aligned_cols=71 Identities=25% Similarity=0.511 Sum_probs=67.5
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTN 187 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~ 187 (222)
..|||+|||..+++..|+.+|.+||+|..|.|+ |.||||...+...+..|| .||+.+|+|..|+|..++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 359999999999999999999999999999998 679999999999999999 79999999999999998876
No 61
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1e-11 Score=100.52 Aligned_cols=81 Identities=28% Similarity=0.355 Sum_probs=75.8
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
....+|||-||.+++.+.-|-.+|++||.|..|+|+++. |.+-|||+||.+.+-..|..|| .|||..|++|.|.|.+.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 346899999999999999999999999999999999998 6899999999999999999999 99999999999999987
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 654
No 62
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=8.5e-12 Score=104.52 Aligned_cols=83 Identities=24% Similarity=0.485 Sum_probs=73.9
Q ss_pred cccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH--HcCCceeCCee
Q 027515 101 QAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL--LLNETELHGRQ 178 (222)
Q Consensus 101 ~~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al--~l~g~~l~gr~ 178 (222)
..+..+....+|||++|...+++.+|+.+|.+||.|.+|+++. .+++|||+|.++.+|+.|. .++...|+|++
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 4455566778999999999999999999999999999999985 3679999999999999999 67888899999
Q ss_pred eEEeeccCCC
Q 027515 179 LKVSAKRTNI 188 (222)
Q Consensus 179 i~v~~a~~~~ 188 (222)
|+|.|.++.+
T Consensus 295 l~i~Wg~~~~ 304 (377)
T KOG0153|consen 295 LKIKWGRPKQ 304 (377)
T ss_pred EEEEeCCCcc
Confidence 9999998843
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.31 E-value=6.6e-12 Score=98.46 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=74.2
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhC-CCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSC-GTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~-G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
.......+||..+|..+.+..|..+|.+| |.|..+++.+++ ||.|+|||||+|.+.+.|..|. .||+..|.|+.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456789999999999999999999998 788889997887 9999999999999999999999 99999999999999
Q ss_pred eeccC
Q 027515 182 SAKRT 186 (222)
Q Consensus 182 ~~a~~ 186 (222)
.+-.+
T Consensus 125 ~vmpp 129 (214)
T KOG4208|consen 125 HVMPP 129 (214)
T ss_pred EEeCc
Confidence 87654
No 64
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.29 E-value=7.1e-12 Score=114.12 Aligned_cols=78 Identities=21% Similarity=0.468 Sum_probs=72.1
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
....++|||||.|+.++++.+|..+|..||.|.+|.++ .++|||||++.++.+|.+|| .|+...+.++.|+|.|
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 34467999999999999999999999999999999987 46899999999999999999 9999999999999999
Q ss_pred ccCC
Q 027515 184 KRTN 187 (222)
Q Consensus 184 a~~~ 187 (222)
+..+
T Consensus 492 a~g~ 495 (894)
T KOG0132|consen 492 AVGK 495 (894)
T ss_pred eccC
Confidence 9753
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.5e-11 Score=107.08 Aligned_cols=75 Identities=23% Similarity=0.456 Sum_probs=71.0
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCC
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTN 187 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~ 187 (222)
.|||.||++.++...|..+|+.||.|.+|++.++..| ++|| ||+|.+.+.|.+|| .+||..+.|+.|.|.....+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 3999999999999999999999999999999999987 9999 99999999999999 99999999999999877554
No 66
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.24 E-value=3.5e-11 Score=106.52 Aligned_cols=82 Identities=18% Similarity=0.365 Sum_probs=76.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
.+++|||.+|+..|...+|+.+|++||+|.-.+||++. +...++|+||++.+...|.+|| .||.+.|+||.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 56889999999999999999999999999999999986 7778999999999999999999 999999999999999987
Q ss_pred CCCC
Q 027515 186 TNIP 189 (222)
Q Consensus 186 ~~~~ 189 (222)
.-+.
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 6543
No 67
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.24 E-value=1.3e-11 Score=95.08 Aligned_cols=82 Identities=24% Similarity=0.429 Sum_probs=74.2
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeE-EEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNR-VTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
...+.+|||+||.+.+.+..|...|+.||+|.. -.++++. ||.++|||||.|.+.+.+.+|| .+||..++.|+|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 344578999999999999999999999998865 4778887 8999999999999999999999 999999999999999
Q ss_pred eccCC
Q 027515 183 AKRTN 187 (222)
Q Consensus 183 ~a~~~ 187 (222)
++..+
T Consensus 173 ya~k~ 177 (203)
T KOG0131|consen 173 YAFKK 177 (203)
T ss_pred EEEec
Confidence 99644
No 68
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.20 E-value=3.3e-11 Score=102.03 Aligned_cols=81 Identities=27% Similarity=0.511 Sum_probs=76.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
....|||++||..+++++|+.+|.+||.|..+-++.+. +.+++||+||.|.+.+++.+++.+.-+.|+|+.+.|..|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 45689999999999999999999999999999999998 79999999999999999999999999999999999999977
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
+.
T Consensus 176 k~ 177 (311)
T KOG4205|consen 176 KE 177 (311)
T ss_pred hh
Confidence 64
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=1.4e-11 Score=111.45 Aligned_cols=80 Identities=28% Similarity=0.492 Sum_probs=74.3
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
...|+|+|||+.++-.+++.+|..||+|.+|+|+... .+.++|||||.|-++..|.+|+ +|.++.|.||+|.+.||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 5689999999999999999999999999999999874 5778999999999999999999 9999999999999999976
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
..
T Consensus 693 d~ 694 (725)
T KOG0110|consen 693 DN 694 (725)
T ss_pred ch
Confidence 43
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.17 E-value=2.8e-11 Score=102.45 Aligned_cols=81 Identities=22% Similarity=0.496 Sum_probs=75.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
..++|||++|++.++++.|+.+|.+||.|..|.+++++ +++++||+||+|.+...+.++|....+.|.|+.|-+..|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 57889999999999999999999999999999999999 79999999999999999999998888999999999998876
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
+-
T Consensus 85 r~ 86 (311)
T KOG4205|consen 85 RE 86 (311)
T ss_pred cc
Confidence 64
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1e-10 Score=101.92 Aligned_cols=74 Identities=26% Similarity=0.437 Sum_probs=69.8
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCCC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNI 188 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~~ 188 (222)
..|||| +.+|+..|.++|+++|+|.+|+|+++. + +.|||||.|.++.+|.+|| .+|...|+|++|+|.|+...+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 358999 999999999999999999999999999 6 9999999999999999999 999999999999999997654
No 72
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=5.3e-11 Score=97.73 Aligned_cols=76 Identities=28% Similarity=0.541 Sum_probs=70.7
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...+.+|+|+||.+.+|..+|+..|.+||+|..|.|+ ++|+||.|...++|..|+ .|++..+.|++++|+.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 3457789999999999999999999999999999998 789999999999999999 99999999999999998
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
.++.
T Consensus 148 tsrl 151 (346)
T KOG0109|consen 148 TSRL 151 (346)
T ss_pred cccc
Confidence 7653
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=9.9e-11 Score=95.21 Aligned_cols=81 Identities=28% Similarity=0.500 Sum_probs=73.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCce-eCC--eeeEEee
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETE-LHG--RQLKVSA 183 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~-l~g--r~i~v~~ 183 (222)
..++||||.|...-.+++++.+|..||.|..|.+.+...|.+||||||.|.+..+|+.|| .|||.. +-| ..|.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 578899999999999999999999999999999999889999999999999999999999 999853 444 5689999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
+...+
T Consensus 98 ADTdk 102 (371)
T KOG0146|consen 98 ADTDK 102 (371)
T ss_pred ccchH
Confidence 97654
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.8e-10 Score=104.25 Aligned_cols=75 Identities=31% Similarity=0.505 Sum_probs=69.7
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCC----CcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG----QPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~----~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
+|||.||++.+|.+.|..+|..+|.|.+|.|...+.+ .|.|||||+|.+.++|+.|+ .|+|+.|.|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999999877644 35699999999999999999 999999999999999998
No 75
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.10 E-value=4.7e-10 Score=101.58 Aligned_cols=82 Identities=17% Similarity=0.317 Sum_probs=75.1
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCC----CCcccEEEEEEcCHHHHHHHH-HcCCceeCCeee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF----GQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQL 179 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t----~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i 179 (222)
..+..++|||+||++.+++..|...|..||+|.+|+|+.-++ .+.+.|+||.|.+..+|++|+ .|+|+.|.++.|
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 355678899999999999999999999999999999987764 467889999999999999999 999999999999
Q ss_pred EEeeccC
Q 027515 180 KVSAKRT 186 (222)
Q Consensus 180 ~v~~a~~ 186 (222)
++-|+++
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999965
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.10 E-value=4.8e-10 Score=94.08 Aligned_cols=80 Identities=29% Similarity=0.516 Sum_probs=73.4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeE--------EEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCe
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNR--------VTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGR 177 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr 177 (222)
..+..|||.|||.++|.+++..+|++||-|.+ |+|.++..|+.||=|.++|...+++..|| .|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34566999999999999999999999998853 88888888999999999999999999999 9999999999
Q ss_pred eeEEeeccC
Q 027515 178 QLKVSAKRT 186 (222)
Q Consensus 178 ~i~v~~a~~ 186 (222)
.|+|..|+-
T Consensus 212 ~~rVerAkf 220 (382)
T KOG1548|consen 212 KLRVERAKF 220 (382)
T ss_pred EEEEehhhh
Confidence 999999864
No 77
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.08 E-value=1.4e-09 Score=89.01 Aligned_cols=80 Identities=26% Similarity=0.439 Sum_probs=73.9
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
....+|+|.|||+.++..+|+++|..||.+..+.|-.+++|.+.|+|-|.|....+|.+|+ .+++..|+|+.|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3457899999999999999999999999999999988899999999999999999999999 999999999999998764
Q ss_pred C
Q 027515 186 T 186 (222)
Q Consensus 186 ~ 186 (222)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.04 E-value=5.4e-10 Score=96.37 Aligned_cols=79 Identities=27% Similarity=0.398 Sum_probs=69.6
Q ss_pred ccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 102 ~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
..-..+..++|||+|||+++|...|+.-|..||.|.++.|+. .|+++| .|.|.++++|+.|+ .+++..|.||.|+
T Consensus 529 a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 529 AVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred cccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 334456788999999999999999999999999999988853 366777 89999999999999 8999999999999
Q ss_pred Eeec
Q 027515 181 VSAK 184 (222)
Q Consensus 181 v~~a 184 (222)
|.|.
T Consensus 605 V~y~ 608 (608)
T KOG4212|consen 605 VTYF 608 (608)
T ss_pred eeeC
Confidence 9874
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.98 E-value=1.1e-08 Score=81.51 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=69.0
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeC-CC-CCcccEEEEEEcCHHHHHHHH-HcCCceeC---Cee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KF-GQPKGFAYVEFVEIDAVQNAL-LLNETELH---GRQ 178 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~t-~~~kg~afV~f~~~~~a~~al-~l~g~~l~---gr~ 178 (222)
....-+||||.+||.++...+|..+|..|---..+.|... +. ..-+-+|||+|.+...|..|+ .|||..++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3445799999999999999999999998864555544332 22 223579999999999999999 99999985 889
Q ss_pred eEEeeccCCCC
Q 027515 179 LKVSAKRTNIP 189 (222)
Q Consensus 179 i~v~~a~~~~~ 189 (222)
|+|.+|+++..
T Consensus 110 LhiElAKSNtK 120 (284)
T KOG1457|consen 110 LHIELAKSNTK 120 (284)
T ss_pred eEeeehhcCcc
Confidence 99999998763
No 80
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1.4e-09 Score=92.11 Aligned_cols=80 Identities=20% Similarity=0.387 Sum_probs=73.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCC-CCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t-~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
.-.+|||..+-++.++.+|+..|.-||+|.+|.+.+.+| +.+|||+|++|.+..+...|| .+|-+.|+|+.|+|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 346899999999999999999999999999999999984 789999999999999999999 899999999999998775
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
..
T Consensus 289 TP 290 (544)
T KOG0124|consen 289 TP 290 (544)
T ss_pred CC
Confidence 43
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.4e-09 Score=87.14 Aligned_cols=72 Identities=26% Similarity=0.542 Sum_probs=67.0
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCCC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNI 188 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~~ 188 (222)
..|||++||+.+.+.+|..||..||+|..|.+. .||+||.|.+..+|.-|+ .||+..|.|-.+.|.+++..+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 359999999999999999999999999999875 689999999999999999 999999999889999998765
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.84 E-value=3.1e-09 Score=85.98 Aligned_cols=82 Identities=18% Similarity=0.396 Sum_probs=74.8
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
.-.....+||.+.|.-.+|.+.|...|.+|-.....++++++ ||+++||+||.|.+..++..|+ .++|.+++.|.|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 334467889999999999999999999999988889999997 9999999999999999999999 99999999999988
Q ss_pred eecc
Q 027515 182 SAKR 185 (222)
Q Consensus 182 ~~a~ 185 (222)
+.+-
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 7653
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.78 E-value=6.1e-08 Score=68.52 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=66.2
Q ss_pred cEEEEeccCCCCCHHHHHHHhhh--CCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeC----CeeeEE
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQS--CGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELH----GRQLKV 181 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~--~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~----gr~i~v 181 (222)
+||.|+|||-..|...|..++.. .|..-.+.|+.|- ++-+.|||||.|.++..|.... .++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999975 3577778899997 7899999999999999999998 89998875 566788
Q ss_pred eecc
Q 027515 182 SAKR 185 (222)
Q Consensus 182 ~~a~ 185 (222)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8875
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.73 E-value=7.8e-08 Score=84.31 Aligned_cols=79 Identities=24% Similarity=0.451 Sum_probs=68.5
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
.....|-+++|||++|+++|+.||+.++ |.++.+ .+ +|++.|-|||+|.+.+++++||..+...+..|.|.|..+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~--~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI--PRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEE--eccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 3456788899999999999999999986 676443 34 6999999999999999999999999999999999999886
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
...
T Consensus 85 ~~e 87 (510)
T KOG4211|consen 85 GAE 87 (510)
T ss_pred Ccc
Confidence 543
No 85
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.69 E-value=1e-07 Score=83.54 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=68.5
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeE-EEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNR-VTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
.....|-+++||+.||+++|.+||+..-.|.. |.++.+..+++.|=|||+|.+.+.|++||.-|...|+.|-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 34678999999999999999999997755544 6677777888999999999999999999988889999999999865
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=6.5e-09 Score=82.45 Aligned_cols=77 Identities=27% Similarity=0.309 Sum_probs=71.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
..+||||+||...++++-|.++|-+-|+|..|.|+..+.+..| ||||.|.+.-++.-|+ .+||..|.++.|.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4689999999999999999999999999999999988888888 9999999999999999 899999999999887654
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=3.6e-08 Score=87.55 Aligned_cols=75 Identities=20% Similarity=0.457 Sum_probs=66.8
Q ss_pred ccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 102 ~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
+.......++|+|-|||..++.++|+.+|+.||.|..|+.- -..+|..||.|.+..+|++|+ +|++..|.|+.|+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 33445678999999999999999999999999999987654 345899999999999999999 9999999999998
No 88
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.67 E-value=2.1e-08 Score=84.59 Aligned_cols=82 Identities=32% Similarity=0.573 Sum_probs=73.3
Q ss_pred CCcEEE-EeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 108 DSRSIY-VGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vf-V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
...++| |++|++.++.++|+.+|..+|.|..++++.++ ++..+|||||.|.....+..++..+...+.++++.|.+..
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 345566 99999999999999999999999999999998 8999999999999999999998338899999999999988
Q ss_pred CCCC
Q 027515 186 TNIP 189 (222)
Q Consensus 186 ~~~~ 189 (222)
+++.
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 7653
No 89
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.66 E-value=1.1e-08 Score=90.63 Aligned_cols=86 Identities=28% Similarity=0.450 Sum_probs=78.8
Q ss_pred CcccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCee
Q 027515 100 TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQ 178 (222)
Q Consensus 100 ~~~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~ 178 (222)
......+...+|||+--|+..++..+|..||+.+|+|..|+|+.++ ++.++|.|||+|.+...+..||.|.|..+.|.+
T Consensus 170 ~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~p 249 (549)
T KOG0147|consen 170 RILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVP 249 (549)
T ss_pred ccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCce
Confidence 3444556678899999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred eEEeecc
Q 027515 179 LKVSAKR 185 (222)
Q Consensus 179 i~v~~a~ 185 (222)
|.|+...
T Consensus 250 v~vq~sE 256 (549)
T KOG0147|consen 250 VIVQLSE 256 (549)
T ss_pred eEecccH
Confidence 9998764
No 90
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.65 E-value=8e-08 Score=81.37 Aligned_cols=83 Identities=27% Similarity=0.470 Sum_probs=74.1
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCee--------EEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeC
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVN--------RVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELH 175 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~ 175 (222)
.....+|||.+||..++.++|..+|.++|.|. .|.|-+++ |+.+||-|.|.|.+...|++|| -+++..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567899999999999999999999999874 36777787 8999999999999999999999 89999999
Q ss_pred CeeeEEeeccCCC
Q 027515 176 GRQLKVSAKRTNI 188 (222)
Q Consensus 176 gr~i~v~~a~~~~ 188 (222)
|..|+|..|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999986544
No 91
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.59 E-value=5.1e-08 Score=79.06 Aligned_cols=71 Identities=23% Similarity=0.408 Sum_probs=60.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-C--------CCcccE----EEEEEcCHHHHHHHH-HcCCce
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-F--------GQPKGF----AYVEFVEIDAVQNAL-LLNETE 173 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t--------~~~kg~----afV~f~~~~~a~~al-~l~g~~ 173 (222)
....||++|||+.+...-|+.+|+.||.|-+|.|.... + |.++++ ++|+|.+...|..+. .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999999999999999987554 3 223222 789999999999999 999999
Q ss_pred eCCee
Q 027515 174 LHGRQ 178 (222)
Q Consensus 174 l~gr~ 178 (222)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 92
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.50 E-value=4.4e-07 Score=76.66 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=68.3
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCC--CeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCG--TVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
....++||+||-|.+|.++|.+.+...| .|..+++.-++ +|++||||+|...+..++++.+ .|..+.|+|+.-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456899999999999999999998877 77888888888 6999999999999999999999 899999999876664
Q ss_pred e
Q 027515 183 A 183 (222)
Q Consensus 183 ~ 183 (222)
.
T Consensus 158 ~ 158 (498)
T KOG4849|consen 158 S 158 (498)
T ss_pred c
Confidence 3
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=9.3e-08 Score=85.34 Aligned_cols=79 Identities=25% Similarity=0.468 Sum_probs=74.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
....|||++||...++.++++++..||.+...+++.+. +|.++||||.+|.+......|+ .|||+.+++++|.|+.|-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45679999999999999999999999999999999998 7999999999999999999999 999999999999999885
Q ss_pred C
Q 027515 186 T 186 (222)
Q Consensus 186 ~ 186 (222)
.
T Consensus 368 ~ 368 (500)
T KOG0120|consen 368 V 368 (500)
T ss_pred c
Confidence 4
No 94
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.49 E-value=1.3e-06 Score=75.32 Aligned_cols=75 Identities=29% Similarity=0.428 Sum_probs=67.9
Q ss_pred CcEEEEeccCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
...|.|.||.. .+|.+-|..+|+-||.|.+|+|..++ +--|+|.|.+...|+-|+ .|+|+.|.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 57888999955 59999999999999999999999765 468999999999999999 9999999999999999975
Q ss_pred C
Q 027515 187 N 187 (222)
Q Consensus 187 ~ 187 (222)
.
T Consensus 373 ~ 373 (492)
T KOG1190|consen 373 T 373 (492)
T ss_pred c
Confidence 4
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.44 E-value=1.5e-06 Score=59.16 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=47.1
Q ss_pred cEEEEeccCCCCCHHHH----HHHhhhCC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 110 RSIYVGNVDYACTPEEV----QQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L----~~~F~~~G-~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
..|||.|||.+.....| +.++..+| +|..| +.+.|+|.|.+++.|.+|+ .|+|-.+.|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 46999999999887764 45555776 77665 2589999999999999999 9999999999999999
Q ss_pred cc
Q 027515 184 KR 185 (222)
Q Consensus 184 a~ 185 (222)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 84
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.26 E-value=6.2e-06 Score=69.59 Aligned_cols=80 Identities=18% Similarity=0.342 Sum_probs=61.4
Q ss_pred cCCcEEEEeccCCCCCHHH----H--HHHhhhCCCeeEEEEeeCC-C-CCcccE--EEEEEcCHHHHHHHH-HcCCceeC
Q 027515 107 VDSRSIYVGNVDYACTPEE----V--QQHFQSCGTVNRVTILTDK-F-GQPKGF--AYVEFVEIDAVQNAL-LLNETELH 175 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~----L--~~~F~~~G~i~~v~i~~~~-t-~~~kg~--afV~f~~~~~a~~al-~l~g~~l~ 175 (222)
....-|||-+||+.+..++ | .++|.+||.|..|.|.+.. + ..-.+. .||+|.+.++|.+|| ..+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456799999998876555 3 4899999999988665433 1 111222 399999999999999 99999999
Q ss_pred CeeeEEeeccC
Q 027515 176 GRQLKVSAKRT 186 (222)
Q Consensus 176 gr~i~v~~a~~ 186 (222)
||.|+..|...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999987543
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=3e-06 Score=68.14 Aligned_cols=72 Identities=28% Similarity=0.500 Sum_probs=63.3
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
....+.++|.||+..+...+|..+|.++|++....+ ..+++||+|.+..++..|| .|++..|.++.|.+...
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 445678999999999999999999999999855443 3789999999999999999 99999999999999443
No 98
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.16 E-value=2.8e-06 Score=72.69 Aligned_cols=81 Identities=14% Similarity=0.271 Sum_probs=70.7
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCC-CeeE--EEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCG-TVNR--VTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G-~i~~--v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
.....+|-+++||+.+|.++|..||..|. .|.. |+++.+..|++.|-|||+|.+.+.|..|. ..+.+..+.|.|.|
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 33466899999999999999999999887 4444 88999889999999999999999999999 88888888999999
Q ss_pred eeccC
Q 027515 182 SAKRT 186 (222)
Q Consensus 182 ~~a~~ 186 (222)
..+..
T Consensus 357 fp~S~ 361 (508)
T KOG1365|consen 357 FPCSV 361 (508)
T ss_pred eeccH
Confidence 87643
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.14 E-value=1e-05 Score=58.24 Aligned_cols=69 Identities=20% Similarity=0.349 Sum_probs=43.4
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-Hc--C---CceeCCeeeEEee
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LL--N---ETELHGRQLKVSA 183 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l--~---g~~l~gr~i~v~~ 183 (222)
+.|+|.+++..++.++|+.+|++||.|..|.+... -..|||.|.+.+.|+.|+ .+ . +..|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57899999999999999999999999999988643 348999999999999998 43 3 4567777766653
No 100
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.07 E-value=1.8e-05 Score=63.45 Aligned_cols=77 Identities=13% Similarity=0.296 Sum_probs=67.7
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC-CeeeEEe
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH-GRQLKVS 182 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~-gr~i~v~ 182 (222)
..+...++|+.|||..++.+.|..+|.+|.-...|+++..+ ++.|||+|.+...+..|. .+.+..|- ...++|.
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 35567899999999999999999999999989999988644 689999999999999999 89998886 7888888
Q ss_pred ecc
Q 027515 183 AKR 185 (222)
Q Consensus 183 ~a~ 185 (222)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 764
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.00 E-value=2.2e-05 Score=71.87 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=66.1
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCe-eEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTV-NRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
+.|-+.|+|+.++-++|.+||..|-.+ .+|++..+..|...|-|.|.|.+.+.|.+|. .|++..|..|.|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 478899999999999999999999755 4567766668999999999999999999999 9999999999998764
No 102
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.93 E-value=1.1e-05 Score=64.60 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=52.7
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCcee
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETEL 174 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l 174 (222)
...||||-||..++|+++|+.+|+.|.-...++|.. +. ....||+.|...+.|..|+ .|.|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RG--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CC--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 356899999999999999999999998666666532 22 2458999999999999999 8988766
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.92 E-value=0.00011 Score=62.99 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=60.4
Q ss_pred cEEEEe--ccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCcee--CCeeeEEeec
Q 027515 110 RSIYVG--NVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETEL--HGRQLKVSAK 184 (222)
Q Consensus 110 ~~vfV~--nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l--~gr~i~v~~a 184 (222)
..|.+. |--+.+|.+.|..+..+.|+|.+|.|.+ ++---|+|+|.+.+.|++|. .|||..| +-.+|+|.+|
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk----kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK----KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe----ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEec
Confidence 344444 5455699999999999999999998875 24456999999999999999 9999877 3468999999
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
++.
T Consensus 197 kP~ 199 (494)
T KOG1456|consen 197 KPT 199 (494)
T ss_pred Ccc
Confidence 874
No 104
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.92 E-value=8e-05 Score=56.22 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=54.1
Q ss_pred CCcEEEEeccC-----CCCCHH----HHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCee
Q 027515 108 DSRSIYVGNVD-----YACTPE----EVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQ 178 (222)
Q Consensus 108 ~~~~vfV~nLp-----~~~t~~----~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~ 178 (222)
...||.|.=+. .....+ .|...|+.||.|.-||++ -+.-+|+|.+-..|-+|+.++|..|+|+.
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-------~~~mwVTF~dg~sALaals~dg~~v~g~~ 98 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-------GDTMWVTFRDGQSALAALSLDGIQVNGRT 98 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-------TTCEEEEESSCHHHHHHHHGCCSEETTEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-------CCeEEEEECccHHHHHHHccCCcEECCEE
Confidence 45677776555 123333 677888999999988887 46789999999999999999999999999
Q ss_pred eEEeeccCC
Q 027515 179 LKVSAKRTN 187 (222)
Q Consensus 179 i~v~~a~~~ 187 (222)
|+|+...+.
T Consensus 99 l~i~LKtpd 107 (146)
T PF08952_consen 99 LKIRLKTPD 107 (146)
T ss_dssp EEEEE----
T ss_pred EEEEeCCcc
Confidence 999987653
No 105
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.86 E-value=1.3e-05 Score=74.76 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=71.3
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
...|||+|+|+..|.+.|+.+|..+|.+++++++..+.|+++|.|||.|.+...+.+++ ......++-+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 45699999999999999999999999999999999999999999999999999999999 8888888888888877554
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.83 E-value=0.00012 Score=62.15 Aligned_cols=80 Identities=20% Similarity=0.405 Sum_probs=63.4
Q ss_pred ccccCCcEEEEecc--C--CCCCH-------HHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCC
Q 027515 104 KEEVDSRSIYVGNV--D--YACTP-------EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNE 171 (222)
Q Consensus 104 ~~~~~~~~vfV~nL--p--~~~t~-------~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g 171 (222)
......+||.|+|| | +..+. ++|+.-..+||+|.+|.|.- .++.|.+-|.|.+.+.|..|| .|+|
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec---cCCCceeEEEeCChHHHHHHHHHhcC
Confidence 34456789999998 2 23442 34555678999999998763 357899999999999999999 9999
Q ss_pred ceeCCeeeEEeeccC
Q 027515 172 TELHGRQLKVSAKRT 186 (222)
Q Consensus 172 ~~l~gr~i~v~~a~~ 186 (222)
.++.||.|....-..
T Consensus 337 R~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 337 RWFDGRQLTASIWDG 351 (382)
T ss_pred eeecceEEEEEEeCC
Confidence 999999999887654
No 107
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00011 Score=65.92 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=62.9
Q ss_pred CCcEEEEeccCCCCCH------HHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC-Ceee
Q 027515 108 DSRSIYVGNVDYACTP------EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH-GRQL 179 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~------~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~-gr~i 179 (222)
-...|+|-|+|---.. .-|.++|+++|+|..+.++.+..|..+||.|++|.+..+|+.|+ .|||+.|. .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3567999999874322 24678899999999999998886679999999999999999999 99999885 6677
Q ss_pred EEee
Q 027515 180 KVSA 183 (222)
Q Consensus 180 ~v~~ 183 (222)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 7764
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.75 E-value=9.7e-05 Score=46.38 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=43.1
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL 167 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al 167 (222)
+.|-|.+.+...... +..+|.+||.|..+.+. ....+.||.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 568899999887755 55599999999998875 34679999999999999985
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.72 E-value=1.9e-05 Score=67.71 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=62.9
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhC----CCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSC----GTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~----G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
-.|-+++||+++|..++..||.+- |-...|.+++...|+..|-|||.|...++|+.||.-|...|+-|.|.+..+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356778999999999999999743 244567777777899999999999999999999977888888888877654
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.71 E-value=0.00022 Score=61.15 Aligned_cols=78 Identities=28% Similarity=0.356 Sum_probs=69.0
Q ss_pred ccCCcEEEEeccCCC-CCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
...++.+.|-+|... ++-+.|..+|-.||.|.+|++++.+ .|.|+|++.+..++++|+ .||+..|-|.+|.|+.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 345788999999876 6778899999999999999999765 589999999999999999 9999999999999998
Q ss_pred ccCC
Q 027515 184 KRTN 187 (222)
Q Consensus 184 a~~~ 187 (222)
++-.
T Consensus 360 SkQ~ 363 (494)
T KOG1456|consen 360 SKQN 363 (494)
T ss_pred cccc
Confidence 8643
No 111
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.64 E-value=0.00012 Score=59.77 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=63.6
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcC----CceeCCeeeEEeec
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLN----ETELHGRQLKVSAK 184 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~----g~~l~gr~i~v~~a 184 (222)
..|||.||+.-+..+.|...|+.||+|....++.+..+++.+-++|.|...-.+.+|+ .++ +.+..+++.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999999988887877889999999999999999998 553 23445666666654
No 112
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.60 E-value=9.3e-05 Score=64.38 Aligned_cols=70 Identities=30% Similarity=0.445 Sum_probs=57.5
Q ss_pred cccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeC---C-C--CC--------cccEEEEEEcCHHHHHHH
Q 027515 101 QAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD---K-F--GQ--------PKGFAYVEFVEIDAVQNA 166 (222)
Q Consensus 101 ~~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~---~-t--~~--------~kg~afV~f~~~~~a~~a 166 (222)
.-...+..++||.+-|||.+-.-+-|.++|+.+|.|..|+|+.. . + +. .+-||||+|.....|.+|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 33445578999999999999888999999999999999999865 2 1 21 356799999999999999
Q ss_pred H-HcC
Q 027515 167 L-LLN 170 (222)
Q Consensus 167 l-~l~ 170 (222)
. .|+
T Consensus 303 ~e~~~ 307 (484)
T KOG1855|consen 303 RELLN 307 (484)
T ss_pred HHhhc
Confidence 9 454
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.53 E-value=0.00051 Score=48.87 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=52.7
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEe-eC-------CCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeee-
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL-TD-------KFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQL- 179 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~-~~-------~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i- 179 (222)
.+.|.|-+.|+..+ ..|..+|++||.|....-+ ++ +......+..|.|.++.+|.+||..||..|+|..|
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 45678889999855 5677899999999776411 10 11234678999999999999999999999998654
Q ss_pred EEeeccC
Q 027515 180 KVSAKRT 186 (222)
Q Consensus 180 ~v~~a~~ 186 (222)
-|.++++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 5777643
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00075 Score=60.14 Aligned_cols=64 Identities=30% Similarity=0.349 Sum_probs=58.2
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhh-hCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQ-SCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL 167 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al 167 (222)
..-...+|||||+||.-+|..+|..+|. -||.|..+-|-+|. -+-++|-|=|+|.+..+--+||
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 3445678999999999999999999999 69999999999985 6889999999999999999998
No 115
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.00077 Score=60.65 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=52.1
Q ss_pred HHHHhhhCCCeeEEEEeeC-CC---CCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 126 VQQHFQSCGTVNRVTILTD-KF---GQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 126 L~~~F~~~G~i~~v~i~~~-~t---~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
++.-+++||.|..|.+++. .. .-..|..||+|.+.+++++|+ +|+|.++.||.+...|-..
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 4555679999999999887 33 356788999999999999999 9999999999999888643
No 116
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.29 E-value=0.00077 Score=58.51 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=64.3
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCe-eeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGR-QLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr-~i~v~~a 184 (222)
+++.+|.+.|+|.++++++|+.+|..-|-..+.... .++.+-+|++.+.+.+.|-.|+ .++.+.+++. .|+|.++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf---f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF---FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee---cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 356789999999999999999999988865443321 2456779999999999999999 8999999865 8999998
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
++.
T Consensus 489 ks~ 491 (492)
T KOG1190|consen 489 KST 491 (492)
T ss_pred ccc
Confidence 763
No 117
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.0032 Score=49.32 Aligned_cols=62 Identities=16% Similarity=0.338 Sum_probs=54.5
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCcee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETEL 174 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l 174 (222)
.....|.|.+||.+.+..+|+.++..-|.|....+.++ |++.|.|...++++-|| .|....+
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccc
Confidence 34568999999999999999999999999998887654 68999999999999999 8876655
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0013 Score=58.69 Aligned_cols=65 Identities=25% Similarity=0.454 Sum_probs=49.1
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeC--C--CCCccc---EEEEEEcCHHHHHHHH-Hc
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD--K--FGQPKG---FAYVEFVEIDAVQNAL-LL 169 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~--~--t~~~kg---~afV~f~~~~~a~~al-~l 169 (222)
....-++.||||+||+.++++.|...|..||.+. |.=+.. . --.++| |+|+.|....++..-| ++
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3445678899999999999999999999999753 221211 1 124677 9999999999888877 44
No 119
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.21 E-value=0.00052 Score=59.22 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=65.9
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC---C-CCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK---F-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~---t-~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
...|-|.||.+++|.++++.+|.-.|.|..++|+.+. + ....-.|||-|.+...+..|..|.++.+-++.|.|.+.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 3479999999999999999999999999999987643 1 34566899999999999999999999988888887765
Q ss_pred c
Q 027515 185 R 185 (222)
Q Consensus 185 ~ 185 (222)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 120
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.18 E-value=0.00018 Score=58.77 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=52.1
Q ss_pred HHHHHHhh-hCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 124 EEVQQHFQ-SCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 124 ~~L~~~F~-~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
++|...|. +||.|..+.|..+..-+-+|-+||.|...++|++|+ .||+..+.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45556666 899999998876655567899999999999999999 99999999999998754
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.13 E-value=0.00026 Score=65.04 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=65.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeE-EEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNR-VTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...+|||..||+.+++..+..+|..--.|.. |.|.+..+++-++-|||.|..+.++..|+ .-+.++++.|.|+|...
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 4678999999999999999999987666665 77776678999999999999988888888 66777888899999743
No 122
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.00 E-value=0.0026 Score=53.13 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=49.8
Q ss_pred HHHHHHhhhCCCeeEEEEeeCCC-C-CcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 124 EEVQQHFQSCGTVNRVTILTDKF-G-QPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 124 ~~L~~~F~~~G~i~~v~i~~~~t-~-~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
.+++.-+.+||+|..|.|...++ . .-.--.||+|...++|.+|+ .|||.+++||.++.++-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35677788999999988876653 2 23445799999999999999 99999999999887764
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.94 E-value=0.00026 Score=66.65 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=68.1
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.....++|||++||+..+++.+|+..|..||.|..|.|-+.+-+.-.-||||.|.+...+-.|+ .+.+..|..-.+++.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 3445678999999999999999999999999999999876655566679999999999999998 899888865566665
Q ss_pred ec
Q 027515 183 AK 184 (222)
Q Consensus 183 ~a 184 (222)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 55
No 124
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.88 E-value=0.00079 Score=60.95 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=61.5
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhh-CCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCcee---CCeee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQS-CGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETEL---HGRQL 179 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l---~gr~i 179 (222)
....++.|||.||-.-+|.-+|+.++.. .|.|... -+ -+-|..|||.|.+.+.|.+.+ +|||..+ +++.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--Wm---DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WM---DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HH---HHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 4556889999999999999999999995 4455443 11 234778999999999999999 9999876 67888
Q ss_pred EEeeccC
Q 027515 180 KVSAKRT 186 (222)
Q Consensus 180 ~v~~a~~ 186 (222)
.|.|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8888753
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=5.7e-05 Score=70.56 Aligned_cols=63 Identities=27% Similarity=0.450 Sum_probs=55.7
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNE 171 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g 171 (222)
..++||+||+..+.+.+|...|..+|.|..+++.... .++.+|+|||.|-.+..+.+||.++-
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d 730 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD 730 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence 4579999999999999999999999999888888555 68999999999999999999995443
No 126
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.55 E-value=0.013 Score=44.01 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=54.4
Q ss_pred cccCCcEEEEeccCCCCC-HHH---HHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeee
Q 027515 105 EEVDSRSIYVGNVDYACT-PEE---VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQL 179 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t-~~~---L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i 179 (222)
.++.-.||.|+=|..++. .++ +...++.||+|.+|.++ .+-.|.|+|.+..+|-+|+ +++. ..-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 345677899987776642 334 44556789999999887 3568999999999999999 7765 5566667
Q ss_pred EEeec
Q 027515 180 KVSAK 184 (222)
Q Consensus 180 ~v~~a 184 (222)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 77664
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.45 E-value=0.001 Score=56.44 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=61.3
Q ss_pred CCcEEEEeccCCCCCHHHHH---HHhhhCCCeeEEEEeeCCC--CC--cccEEEEEEcCHHHHHHHH-HcCCceeCCeee
Q 027515 108 DSRSIYVGNVDYACTPEEVQ---QHFQSCGTVNRVTILTDKF--GQ--PKGFAYVEFVEIDAVQNAL-LLNETELHGRQL 179 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~~~t--~~--~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i 179 (222)
...-+||-+|+.....+.+. .+|.+||.|..|.+..+++ .. +..-+||+|...++|..|| ..+|+.+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34568999998876555443 6899999999998877652 11 2223799999999999999 999999999998
Q ss_pred EEeeccC
Q 027515 180 KVSAKRT 186 (222)
Q Consensus 180 ~v~~a~~ 186 (222)
+..+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 8876644
No 128
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.41 E-value=0.0019 Score=57.07 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=61.5
Q ss_pred CCcEEEEeccCCC-CCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
..+.|-+.-.|+. -|..+|..+|++||.|..|.+-. +.-.|.|+|.+...|-.|-..++..|++|.|+|.|-.+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-----~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-----SSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC-----chhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 4555666666776 47789999999999999987743 24578999999999988888999999999999999765
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.40 E-value=0.0037 Score=59.17 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=65.7
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCC--eeeEEe
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHG--RQLKVS 182 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~g--r~i~v~ 182 (222)
....+.+||++|+..+....|...|..||.|..|.+- +..-||||.|.+...++.|+ .+-|..|+| ++|+|.
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-----hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-----HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-----cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 3456789999999999999999999999999887764 34569999999999999999 999999986 678998
Q ss_pred eccC
Q 027515 183 AKRT 186 (222)
Q Consensus 183 ~a~~ 186 (222)
++..
T Consensus 527 la~~ 530 (975)
T KOG0112|consen 527 LASP 530 (975)
T ss_pred cccC
Confidence 8754
No 130
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.17 E-value=0.0089 Score=47.05 Aligned_cols=79 Identities=13% Similarity=0.076 Sum_probs=49.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhh-CCCe---eEEEEeeCC--C-CCcccEEEEEEcCHHHHHHHH-HcCCceeC---C
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQS-CGTV---NRVTILTDK--F-GQPKGFAYVEFVEIDAVQNAL-LLNETELH---G 176 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~-~G~i---~~v~i~~~~--t-~~~kg~afV~f~~~~~a~~al-~l~g~~l~---g 176 (222)
....|.|++||+++|++++...+++ ++.. ..+.-.... . ......|||.|.+.+++...+ .++|+.+- |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3558999999999999999887776 6654 333322222 2 223456999999999988888 89998773 2
Q ss_pred --eeeEEeeccC
Q 027515 177 --RQLKVSAKRT 186 (222)
Q Consensus 177 --r~i~v~~a~~ 186 (222)
.+..|.+|-.
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2345666654
No 131
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.63 E-value=0.15 Score=36.89 Aligned_cols=66 Identities=9% Similarity=0.132 Sum_probs=48.6
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH 175 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~ 175 (222)
...+.+-..|+.++.+.|..+.+.+- .|..++|+++.+ .++-.+.+.|.+...|.... .+||+.++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33444545566666667766656554 677889887654 36778999999999999999 99998875
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.47 E-value=0.051 Score=43.03 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=45.0
Q ss_pred CHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcC--CceeCCeeeEEeeccCC
Q 027515 122 TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLN--ETELHGRQLKVSAKRTN 187 (222)
Q Consensus 122 t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~--g~~l~gr~i~v~~a~~~ 187 (222)
....|+.+|..|+.+..+... ++.+-..|.|.+.+.|.+|. .|+ +..+.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-----~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-----KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-----TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEc-----CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 347899999999988777665 35677899999999999999 888 99999999999998543
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.47 E-value=0.015 Score=50.94 Aligned_cols=73 Identities=21% Similarity=0.415 Sum_probs=56.8
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCc-eeCCeeeEEeeccC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNET-ELHGRQLKVSAKRT 186 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~-~l~gr~i~v~~a~~ 186 (222)
..+|++||.+.++..+|..+|...- ....-.++ ..|||||.+....-|.+|+ .++|+ .+.|+++.|..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3589999999999999999997431 11112222 3699999999999999999 88875 58999999988755
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
++
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 43
No 134
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.37 E-value=0.11 Score=34.07 Aligned_cols=54 Identities=17% Similarity=0.359 Sum_probs=43.3
Q ss_pred CCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 120 ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 120 ~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
.++..+|+..+..|+- . +|..++ .|| ||.|.+...|++|. ..++..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4688899999999974 3 344444 355 99999999999999 89999998888765
No 135
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.35 E-value=0.15 Score=32.88 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=40.8
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCC---CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-Hc
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCG---TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LL 169 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G---~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l 169 (222)
...|+|++|.. .+..+|+.+|..|. ...+|.-+-+ -.|-|.|.+...|.+|| +|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC------CcEEEEECCHHHHHHHHHcC
Confidence 45799999954 67788999999981 2345555544 25789999999999998 54
No 136
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.25 E-value=0.013 Score=53.97 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=62.1
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.......+|||+|+...+..+-++.++..+|.|.++.... |+|..|..+.....|+ .|+-..++|..+.+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 3344567999999999999999999999999998886542 9999999999999999 889899999888776
Q ss_pred e
Q 027515 183 A 183 (222)
Q Consensus 183 ~ 183 (222)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.15 E-value=0.13 Score=34.35 Aligned_cols=66 Identities=20% Similarity=0.451 Sum_probs=38.8
Q ss_pred EEEEe-ccCCCCCHHHHHHHhhhCC-----CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 111 SIYVG-NVDYACTPEEVQQHFQSCG-----TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 111 ~vfV~-nLp~~~t~~~L~~~F~~~G-----~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
++||. +=-..++..+|..+|...+ .|-.|.|. ..|+||.-... .|..++ .|++..+.|++|+|..
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE--------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 35553 2234578889999998664 56678775 45889988764 677888 9999999999999987
Q ss_pred c
Q 027515 184 K 184 (222)
Q Consensus 184 a 184 (222)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 5
No 138
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.73 E-value=0.022 Score=48.22 Aligned_cols=82 Identities=16% Similarity=0.066 Sum_probs=65.5
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCc-eeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNET-ELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~-~l~gr~i~v~~a 184 (222)
....++|++++.+.+.+..+..+|..+|.+..+.+.... ...++|++++.|...+.+..||.+.+. .+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 346789999999999999899999999977776666544 678999999999999999999977764 566666665555
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
..+.
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 4433
No 139
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.51 E-value=0.16 Score=42.89 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=52.9
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCee-eEEeeccC
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQ-LKVSAKRT 186 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~-i~v~~a~~ 186 (222)
-|-|-++|+..+. -|..+|.+||.|.+... +.+-.+-+|.|.++.+|++||..||+.|+|.. |-|..+..
T Consensus 199 WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~-----~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 199 WVTVFGFPPGQVS-IVLNLFSRCGEVVKHVT-----PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred eEEEeccCccchh-HHHHHHHhhCeeeeeec-----CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 3555588887664 56678999998865432 34566899999999999999999999999875 46666433
No 140
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=94.37 E-value=0.92 Score=44.05 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=28.6
Q ss_pred CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC
Q 027515 135 TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH 175 (222)
Q Consensus 135 ~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~ 175 (222)
+|.+|..+ -.-+||-||+=.....+..|| .+-+++++
T Consensus 199 qI~Sv~a~----D~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 199 QIKSVFAK----DHLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred eEEEEEec----cccceeEEEEechhHHHHHHHhhhhhheec
Confidence 45555433 235899999999999999999 88887776
No 141
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.21 E-value=0.17 Score=44.82 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=57.8
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHG 176 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~g 176 (222)
++.|+|=.+|-.+|..+|..|+..|- .|..|+|+++.. .++=.++|.|.+..+|.... .+||..++-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999999765 789999998653 23557899999999999999 999988763
No 142
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.57 Score=41.08 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=49.2
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCC-eeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGT-VNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQ 178 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~ 178 (222)
.-.+.|=|-++|.....++|...|..|+. -..|.-|- .-.||-+|.+...|..||.+...+|.=|.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD------dthalaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD------DTHALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee------cceeEEeecchHHHHHHhhccCceEEeee
Confidence 35678899999999999999999999973 23344332 23799999999999999976444444333
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.76 E-value=0.094 Score=47.51 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=56.2
Q ss_pred CcEEEEeccCCCCCHHHHHHHhh-hCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCcee---C-CeeeEE
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQ-SCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETEL---H-GRQLKV 181 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l---~-gr~i~v 181 (222)
..++.|+|+|...|-..|.+.-. ..|.=..+.++.|- +..+.|||||.|.++.++..+. ++||+.+ + .+.+.|
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 44566777776666555554432 35555667788775 6789999999999999999999 8998754 3 455677
Q ss_pred eeccC
Q 027515 182 SAKRT 186 (222)
Q Consensus 182 ~~a~~ 186 (222)
.||+-
T Consensus 468 tYArI 472 (549)
T KOG4660|consen 468 TYARI 472 (549)
T ss_pred ehhhh
Confidence 77754
No 144
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.41 E-value=0.043 Score=48.49 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=2.4
Q ss_pred cEEEEe
Q 027515 110 RSIYVG 115 (222)
Q Consensus 110 ~~vfV~ 115 (222)
.|=||.
T Consensus 192 STDFVC 197 (458)
T PF10446_consen 192 STDFVC 197 (458)
T ss_pred cccccC
Confidence 344443
No 145
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.28 E-value=0.49 Score=32.41 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=38.8
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLN 170 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~ 170 (222)
...||. .|......+|..+|++||.|. |.-+. -..|||....++.|..++ .+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIN------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEEC------TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEc------CCcEEEEeecHHHHHHHHHHhc
Confidence 445555 999999999999999999875 44442 348999999999999988 664
No 146
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.69 E-value=2.5 Score=39.91 Aligned_cols=69 Identities=7% Similarity=0.155 Sum_probs=49.2
Q ss_pred EEEEe-ccCCCCCHHHHHHHhhhCCC-----eeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 111 SIYVG-NVDYACTPEEVQQHFQSCGT-----VNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 111 ~vfV~-nLp~~~t~~~L~~~F~~~G~-----i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
++||. +=-..++...|-.++..-+. |-.|.|. ..|.||+... ..+...+ .|++..+.|+.|.|..
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 559 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQL 559 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-------CCceEEEcCh-hhHHHHHHHhccccccCCceEEEE
Confidence 35553 22456888889888876553 4456664 4588888775 4466777 8999999999999998
Q ss_pred ccCC
Q 027515 184 KRTN 187 (222)
Q Consensus 184 a~~~ 187 (222)
++..
T Consensus 560 ~~~~ 563 (629)
T PRK11634 560 LGDA 563 (629)
T ss_pred CCCC
Confidence 7533
No 147
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.28 E-value=0.15 Score=48.56 Aligned_cols=72 Identities=24% Similarity=0.250 Sum_probs=59.3
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCcee--CCeeeEEeeccCC
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETEL--HGRQLKVSAKRTN 187 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l--~gr~i~v~~a~~~ 187 (222)
+.++.|++-..+..-|..+|++||.|.+++..++ ...|.|.|.+.+.|-.|+ +|+|+.+ -|-+.+|..|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3455556667788889999999999999887643 568999999999999999 9999875 5778899988753
No 148
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=90.80 E-value=0.17 Score=44.81 Aligned_cols=6 Identities=0% Similarity=-0.008 Sum_probs=3.1
Q ss_pred ccCCCC
Q 027515 116 NVDYAC 121 (222)
Q Consensus 116 nLp~~~ 121 (222)
+||-+|
T Consensus 188 ~LPDST 193 (458)
T PF10446_consen 188 ELPDST 193 (458)
T ss_pred CCCCcc
Confidence 455544
No 149
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.22 E-value=1.3 Score=40.74 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=59.9
Q ss_pred ccCCcEEEEeccCCC-CCHHHHHHHhhhC----CCeeEEEEeeCCCCC--------------------------------
Q 027515 106 EVDSRSIYVGNVDYA-CTPEEVQQHFQSC----GTVNRVTILTDKFGQ-------------------------------- 148 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~-~t~~~L~~~F~~~----G~i~~v~i~~~~t~~-------------------------------- 148 (222)
...+++|-|.||.|. +...+|..+|+.| |.|.+|.|.....|+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345788999999997 7888999999866 589999986433221
Q ss_pred ----------------cccEEEEEEcCHHHHHHHH-HcCCceeCC--eeeEEeec
Q 027515 149 ----------------PKGFAYVEFVEIDAVQNAL-LLNETELHG--RQLKVSAK 184 (222)
Q Consensus 149 ----------------~kg~afV~f~~~~~a~~al-~l~g~~l~g--r~i~v~~a 184 (222)
..-||.|+|.+...|.+.. .|+|+.+.. ..|-+++.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1236899999999999988 999999864 44444443
No 150
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.13 E-value=0.55 Score=42.86 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=54.3
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhh--CCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcC--CceeCCeee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQS--CGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLN--ETELHGRQL 179 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~--~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~--g~~l~gr~i 179 (222)
.....|.|.|+-||..+-.++++.+|.. +-++.+|.+-.+ - -=||+|.+..+|+.|. .|. -+.|.|++|
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-----~-nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-----D-NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-----C-ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 3445677899999999999999999984 667777776532 2 2389999999999997 543 356677766
Q ss_pred EEee
Q 027515 180 KVSA 183 (222)
Q Consensus 180 ~v~~ 183 (222)
..++
T Consensus 245 mARI 248 (684)
T KOG2591|consen 245 MARI 248 (684)
T ss_pred hhhh
Confidence 4443
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.68 E-value=0.039 Score=47.99 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=54.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHG 176 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~g 176 (222)
..+||+|++|+..+-..++.+.|..+|.|.+.++. .+...-+|.|.|........|+.++|..+.-
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a---sk~~s~~c~~sf~~qts~~halr~~gre~k~ 215 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTA---SKSRSSSCSHSFRKQTSSKHALRSHGRERKR 215 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh---ccCCCcchhhhHhhhhhHHHHHHhcchhhhh
Confidence 34889999999999999999999999998776553 3445667789999999999999778776653
No 152
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=89.45 E-value=0.67 Score=36.34 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=52.2
Q ss_pred CcEEEEeccCCCCCHH-----HHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCe-eeEE
Q 027515 109 SRSIYVGNVDYACTPE-----EVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGR-QLKV 181 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~-----~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr-~i~v 181 (222)
..++++.+++..+... ....+|.+|-......+. ++.++.-|.|.++..|..|. .+++..|.|+ .|+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-----HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4457778877664322 234555566554433333 34566778999999999998 9999999988 7888
Q ss_pred eeccCCCC
Q 027515 182 SAKRTNIP 189 (222)
Q Consensus 182 ~~a~~~~~ 189 (222)
-++....+
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 88876553
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=88.55 E-value=0.043 Score=48.20 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=61.7
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
++.+-|+|+|+....+.|..++.+||.+..|..+...+ -.-..-|+|.+.+.+..|| .|+|..|....++|.|-.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 56699999999999999999999999998886653321 1223356788999999999 999999999999998864
No 154
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=87.47 E-value=1.4 Score=43.08 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=13.4
Q ss_pred EEEeccCCCCCHHHHHHHhhhCC
Q 027515 112 IYVGNVDYACTPEEVQQHFQSCG 134 (222)
Q Consensus 112 vfV~nLp~~~t~~~L~~~F~~~G 134 (222)
-|+-.+|. |.++|..++..|-
T Consensus 419 Pftf~~P~--s~eel~~lL~~~~ 439 (840)
T PF04147_consen 419 PFTFPCPS--SHEELLELLDGYS 439 (840)
T ss_pred CceecCCC--CHHHHHHHHhcCC
Confidence 34434444 6678888888764
No 155
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=87.30 E-value=0.25 Score=39.97 Aligned_cols=65 Identities=31% Similarity=0.481 Sum_probs=54.3
Q ss_pred CCcEEEEec----cCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCc
Q 027515 108 DSRSIYVGN----VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNET 172 (222)
Q Consensus 108 ~~~~vfV~n----Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~ 172 (222)
...+++.|+ |...+|.+.+...|++-|+|..+++.++..|+++.++|+.+....+.-.++ ...+.
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 356788888 888899999999999999999999998888999999999998777777776 44443
No 156
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.45 E-value=3.1 Score=35.07 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=35.1
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCH
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEI 160 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~ 160 (222)
.-|||+|||.++...+|+..+.+.+.+ -++|.. ..++|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw---kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW---KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEee---ecCCcceeEecCCc
Confidence 459999999999999999999987743 122221 23578899999653
No 157
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=85.30 E-value=1.6 Score=28.68 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=45.1
Q ss_pred HHHHHHhhhCC-CeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 124 EEVQQHFQSCG-TVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 124 ~~L~~~F~~~G-~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
.+|..-|..+| ++..|+.+..+ ++.+...-||+......... .|+=+.|+|+++.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecCcc
Confidence 46788888888 88889888887 56777788888776543333 3455678999999987754
No 158
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=81.48 E-value=3.5 Score=32.42 Aligned_cols=72 Identities=18% Similarity=0.127 Sum_probs=46.9
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCC--CcccEEEEEEcCHHHHHHHHHcCCceeCCeeeE
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG--QPKGFAYVEFVEIDAVQNALLLNETELHGRQLK 180 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~--~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~ 180 (222)
.....+++|.. |.....++|..|-+ |.+.+|.+.....+ ..+|-.||+|.+.+.|.+++.-+.....-..|.
T Consensus 107 ~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~ 180 (205)
T KOG4213|consen 107 EGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELK 180 (205)
T ss_pred HHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHH
Confidence 33456788877 33334444444444 78888877655444 678999999999999999884444444444433
No 159
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=81.19 E-value=4.6 Score=29.45 Aligned_cols=59 Identities=25% Similarity=0.316 Sum_probs=33.8
Q ss_pred EEEEeccCCC---------CCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEc-CHHHHHHHHHcCC
Q 027515 111 SIYVGNVDYA---------CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV-EIDAVQNALLLNE 171 (222)
Q Consensus 111 ~vfV~nLp~~---------~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~-~~~~a~~al~l~g 171 (222)
++.|-|+|.. .+...|+..|+.|.++. ++.+.++. .+.|+++|.|. +-.-...|+.|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHHHHH
Confidence 5667777553 35678999999998875 55555443 56899999997 4666677776553
No 160
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=79.83 E-value=2.8 Score=35.46 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=54.6
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC--------CCCcccEEEEEEcCHHHHHHHH-----HcC--Cce
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK--------FGQPKGFAYVEFVEIDAVQNAL-----LLN--ETE 173 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~--------t~~~kg~afV~f~~~~~a~~al-----~l~--g~~ 173 (222)
.|.|.+.||..+++-+.+...|-+||+|.+|.++.+. ..+......+.|-++..+-..- .|+ .+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5668889999999999999999999999999998765 1234566788888877654322 222 235
Q ss_pred eCCeeeEEeec
Q 027515 174 LHGRQLKVSAK 184 (222)
Q Consensus 174 l~gr~i~v~~a 184 (222)
|+-..|+|.+.
T Consensus 95 L~S~~L~lsFV 105 (309)
T PF10567_consen 95 LKSESLTLSFV 105 (309)
T ss_pred cCCcceeEEEE
Confidence 56666666553
No 161
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=78.67 E-value=5.3 Score=26.18 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=45.4
Q ss_pred HHHHHHhhhCC-CeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccCC
Q 027515 124 EEVQQHFQSCG-TVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTN 187 (222)
Q Consensus 124 ~~L~~~F~~~G-~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~~ 187 (222)
++|..-|...| .|..|.-+..+ ++.+...-||.+........ .++=..|+++.++|...+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~--i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE--IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc--eeehHhhCCeEEEEecCCCC
Confidence 46777888878 78888888777 67788888998876554333 34446788999999887644
No 162
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=78.58 E-value=0.27 Score=44.70 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=54.1
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCee
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQ 178 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~ 178 (222)
.++|||+|++++++-.+|..++..+--+.++.+...- -....-+.+|+|...-...-|+ +||++.+.-..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 5679999999999999999999988766666554333 2456678899999877777788 88887665433
No 163
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=77.68 E-value=5.9 Score=25.49 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=16.6
Q ss_pred HHHHHHhhhCCCeeEEEEeeC
Q 027515 124 EEVQQHFQSCGTVNRVTILTD 144 (222)
Q Consensus 124 ~~L~~~F~~~G~i~~v~i~~~ 144 (222)
.+|+.+|+..|.|.-+.+...
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 579999999999986665433
No 164
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=73.91 E-value=4.2 Score=32.57 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=42.2
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCC-CCcccEEEEEEcCHHHHHHH
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNA 166 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t-~~~kg~afV~f~~~~~a~~a 166 (222)
......+++++++..++...+..+|..+|.+..+.+..... .....+.++.+.....+..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhh
Confidence 34567899999999999999999999999997776665542 33444444444433333333
No 165
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.18 E-value=0.74 Score=40.91 Aligned_cols=76 Identities=3% Similarity=-0.144 Sum_probs=60.5
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
...|+..||-.++..+|.-+|..||.|..+.+.+.- .+..+..+||.-.+ ..+..|| .+....+.|-.++|..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 346788999999999999999999999888776554 46667788888665 4567777 7888888898888887754
No 166
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=68.86 E-value=6.5 Score=36.00 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=35.4
Q ss_pred cccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCCC
Q 027515 149 PKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNI 188 (222)
Q Consensus 149 ~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~~ 188 (222)
-..|+++.|.+...+.+|+ .++|....+..+++..+....
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 3579999999999999999 899999999999998887654
No 167
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=65.95 E-value=8 Score=33.91 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=47.1
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCC-CeeEEEEeeCC-C--CCcccEEEEEEcCHHHHHHHH-HcCCcee
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDK-F--GQPKGFAYVEFVEIDAVQNAL-LLNETEL 174 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~-t--~~~kg~afV~f~~~~~a~~al-~l~g~~l 174 (222)
...|.|++||+..+..+|..-+.+|- .+....+.... . ..-.+.|||.|...+++.... .++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45688999999999999998888764 33333333211 1 233678999999999977777 7787654
No 168
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=63.69 E-value=6.6 Score=26.46 Aligned_cols=6 Identities=17% Similarity=0.374 Sum_probs=2.3
Q ss_pred ccCCCC
Q 027515 11 VYGGEI 16 (222)
Q Consensus 11 ~~~~e~ 16 (222)
+.|+++
T Consensus 53 e~GEdl 58 (77)
T PF12253_consen 53 EEGEDL 58 (77)
T ss_pred CCCccc
Confidence 333333
No 169
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=61.89 E-value=18 Score=34.21 Aligned_cols=11 Identities=9% Similarity=0.359 Sum_probs=6.6
Q ss_pred HHHHHHhhhCC
Q 027515 124 EEVQQHFQSCG 134 (222)
Q Consensus 124 ~~L~~~F~~~G 134 (222)
.-|+.+|.+.|
T Consensus 337 krL~~lLAkMG 347 (622)
T PF02724_consen 337 KRLHKLLAKMG 347 (622)
T ss_pred HHHHHHHHHhC
Confidence 34666666666
No 170
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=59.94 E-value=6.8 Score=32.99 Aligned_cols=66 Identities=23% Similarity=0.460 Sum_probs=42.2
Q ss_pred CcEEEEeccCCC------------CCHHHHHHHhhhCCCeeEEEEee-----CC-CCCcccE--------------EEEE
Q 027515 109 SRSIYVGNVDYA------------CTPEEVQQHFQSCGTVNRVTILT-----DK-FGQPKGF--------------AYVE 156 (222)
Q Consensus 109 ~~~vfV~nLp~~------------~t~~~L~~~F~~~G~i~~v~i~~-----~~-t~~~kg~--------------afV~ 156 (222)
..|||+-+||-. .++..|+..|..||.|..|.|+. .. +|+..|. |||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457888877742 46778999999999998887752 12 3444333 3344
Q ss_pred EcCHHHHHHHH-HcCCcee
Q 027515 157 FVEIDAVQNAL-LLNETEL 174 (222)
Q Consensus 157 f~~~~~a~~al-~l~g~~l 174 (222)
|..-.....|+ .|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 44444555666 6766544
No 171
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=59.46 E-value=8.8 Score=31.52 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=28.4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEE
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV 139 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v 139 (222)
....++|+-|||..+|++.|..+.++.|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 457789999999999999999999999865443
No 172
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=59.32 E-value=4.1 Score=35.92 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=49.2
Q ss_pred CcEEEEeccCCCCCHH--------HHHHHhhh--CCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH
Q 027515 109 SRSIYVGNVDYACTPE--------EVQQHFQS--CGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL 167 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~--------~L~~~F~~--~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al 167 (222)
.+.+|+.++....+.. ++..+|.+ .+.+..|++.++. ...++|..|++|.....+++++
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4678888887776555 89999998 6678888888877 6789999999999999999887
No 173
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=58.14 E-value=52 Score=22.53 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=39.3
Q ss_pred EEEeccCCCCCHHHHHHHhhh-CC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH
Q 027515 112 IYVGNVDYACTPEEVQQHFQS-CG-TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL 167 (222)
Q Consensus 112 vfV~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al 167 (222)
.|+--++..+|-.+++..+.. || .|.+|+.+.-+. ..--|||.+.....|....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~--~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK--GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC--CcEEEEEEeCCCCcHHHHH
Confidence 455567899999999999987 66 677777665442 2346999998776666554
No 174
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=54.78 E-value=19 Score=33.97 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=19.4
Q ss_pred CccccchhcccCCCCCCCCCCCCCcccCC
Q 027515 2 EQHDEQEHDVYGGEIPDEMDADIDVDEHE 30 (222)
Q Consensus 2 ~~~~~~e~~~~~~e~~~e~~~d~d~~~~~ 30 (222)
+.++|=|+|+.|+++.+.+++++|..+++
T Consensus 522 dSDeEWEEEepGESlS~sEddedd~~eEd 550 (811)
T KOG4364|consen 522 DSDEEWEEEEPGESLSDSEDDEDDSLEED 550 (811)
T ss_pred cCcccccccCCCccccccccccccccccc
Confidence 45666677778888888766555544443
No 175
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.57 E-value=27 Score=32.05 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=43.9
Q ss_pred EEeccCCCCCH---HHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeee
Q 027515 113 YVGNVDYACTP---EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQL 179 (222)
Q Consensus 113 fV~nLp~~~t~---~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i 179 (222)
+||||+.-... ..|.++=.+||+|-.+++- ..-.|...+.+.|+.|+.-++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG--------~~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG--------SVPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec--------CceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 57887665433 4455555689999988762 12478889999999999888999888875
No 176
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=50.84 E-value=34 Score=23.56 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=30.0
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEc
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 158 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~ 158 (222)
.-|||+|++..+.+.-...+....+.- ++.++. ++....||+|-++.
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~-~~~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDG-SAVMVW-SDNNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEE-ccCCCCCEEEEEeC
Confidence 349999999988877666665543332 233332 22237899998873
No 177
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=48.20 E-value=28 Score=29.15 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=25.8
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEe
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 142 (222)
.....|+|||+++|..-|..++...-.+..+.++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 3457799999999999999998876555444444
No 178
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.54 E-value=37 Score=23.48 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=24.4
Q ss_pred EEEEEcCHHHHHHHH--HcCCceeCCeeeEEeec
Q 027515 153 AYVEFVEIDAVQNAL--LLNETELHGRQLKVSAK 184 (222)
Q Consensus 153 afV~f~~~~~a~~al--~l~g~~l~gr~i~v~~a 184 (222)
|+|+|....-|++.+ .-+...+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 689999999999998 34556677777666544
No 179
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=42.45 E-value=1e+02 Score=21.17 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=25.2
Q ss_pred EEEeccCCCCCHHHHHHHhhh-CC-CeeEEEEeeC
Q 027515 112 IYVGNVDYACTPEEVQQHFQS-CG-TVNRVTILTD 144 (222)
Q Consensus 112 vfV~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~ 144 (222)
.|+-.++..+|-.+|+.+|.. || .|.+|+.+.-
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 556678999999999999986 77 6666665543
No 180
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=39.62 E-value=37 Score=28.18 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=23.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhh--hCCCe
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQ--SCGTV 136 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~--~~G~i 136 (222)
....++|+|||+.++..-|..++. .||.+
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CCceEEEEEecccchHHHHHHHhhccccccc
Confidence 356789999999999999999887 45543
No 181
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=39.08 E-value=1e+02 Score=20.81 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=24.6
Q ss_pred CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCcee
Q 027515 135 TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETEL 174 (222)
Q Consensus 135 ~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l 174 (222)
.|.++..+ ...+||-||+=.+..++..|+ .+.+...
T Consensus 33 ~I~Si~~~----~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAP----DSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-----TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEe----CCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 46666554 246999999999999999999 7766543
No 182
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=38.27 E-value=16 Score=34.35 Aligned_cols=72 Identities=25% Similarity=0.342 Sum_probs=58.1
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEE
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKV 181 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v 181 (222)
.+||+.|--...+..-+..++..++.++..+++... .+...+-||+.|..+..+..|..|.+..+.-+.+++
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSLPNKKFASKCLKS 584 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhccccccccccceec
Confidence 478998888888888888999999999988888776 677788899999999998877776666665555444
No 183
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=38.06 E-value=72 Score=26.24 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=32.8
Q ss_pred CCHHHHHHHhhhCCCeeE--------------EEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEe
Q 027515 121 CTPEEVQQHFQSCGTVNR--------------VTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS 182 (222)
Q Consensus 121 ~t~~~L~~~F~~~G~i~~--------------v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~ 182 (222)
+|+..|...|.++|-+.- |..+.+ .++..|..+.+.. .|..|+||.|+..
T Consensus 162 mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~-~~k~pgtV~~v~k-----------~Gy~L~~R~IRPA 225 (236)
T KOG3003|consen 162 MTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPD-AAKEPGTVALVTK-----------KGYKLNGRVIRPA 225 (236)
T ss_pred HHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccc-cCCCCCeEEEEec-----------cCcccCCeeechh
Confidence 489999999999995431 111111 2366677666644 5888999987643
No 184
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=35.76 E-value=12 Score=34.77 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHHHHHHH
Q 027515 59 DLEDMKKRLKEIEEEAG 75 (222)
Q Consensus 59 d~~~~~~~~~~~e~~~~ 75 (222)
....++.++.-+.....
T Consensus 375 ~~kdf~~RL~yl~~~~q 391 (556)
T PF05918_consen 375 KLKDFRERLQYLARGTQ 391 (556)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666665544433
No 185
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=35.64 E-value=75 Score=22.21 Aligned_cols=49 Identities=8% Similarity=0.058 Sum_probs=29.1
Q ss_pred cEEEEeccCCCCCHHHHH---HHhhhCCCeeEEEE--e-eCCCCCcccEEEEEEc
Q 027515 110 RSIYVGNVDYACTPEEVQ---QHFQSCGTVNRVTI--L-TDKFGQPKGFAYVEFV 158 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~---~~F~~~G~i~~v~i--~-~~~t~~~kg~afV~f~ 158 (222)
...|+.|||..+....+. ..|..+.+-..|.+ . ....+.+.|++.+.+.
T Consensus 11 g~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 11 GIAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 457999999999887755 44445553334433 1 1224667788766554
No 186
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=34.66 E-value=75 Score=22.42 Aligned_cols=48 Identities=25% Similarity=0.282 Sum_probs=29.2
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVE 159 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~ 159 (222)
.-|||++++..+.+.--..+-..++. -++.++. ++....||+|.++..
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~-~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAW-ATNTESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEE-cCCCCCCcEEEecCC
Confidence 34999999888776654444444443 2233332 333445999998765
No 187
>PTZ00031 ribosomal protein L2; Provisional
Probab=34.65 E-value=14 Score=31.74 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=17.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCe
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTV 136 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i 136 (222)
.+.++-++|||..+...-|......-|++
T Consensus 157 ~GN~lPL~~IP~GT~IhNIE~~pG~Ggkl 185 (317)
T PTZ00031 157 PGNSLPLRNIPVGSIVHNVEMRPGAGGQI 185 (317)
T ss_pred ccCccccccCCCCCEEEEEEecCCCCceE
Confidence 45667777777777655554444443433
No 188
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.52 E-value=30 Score=30.75 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=6.1
Q ss_pred cCHHHHHHHH-HcCCce
Q 027515 158 VEIDAVQNAL-LLNETE 173 (222)
Q Consensus 158 ~~~~~a~~al-~l~g~~ 173 (222)
...+.+.+.. .+.+..
T Consensus 416 ~~~e~~e~~~~~fs~si 432 (514)
T KOG3130|consen 416 RSIECEEATCSDFSESI 432 (514)
T ss_pred hhHHHHHhhhccCchhh
Confidence 3334333333 444433
No 189
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=30.95 E-value=53 Score=29.36 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=29.2
Q ss_pred cCCcEEEEeccCCC-CCHHHHHHHhhhC----CCeeEEEEee
Q 027515 107 VDSRSIYVGNVDYA-CTPEEVQQHFQSC----GTVNRVTILT 143 (222)
Q Consensus 107 ~~~~~vfV~nLp~~-~t~~~L~~~F~~~----G~i~~v~i~~ 143 (222)
....+|-|-||.|. +...+|..+|+.| |+|..|.|..
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 34667889999997 7888999999865 5788888754
No 190
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=30.30 E-value=1.5e+02 Score=27.30 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=36.5
Q ss_pred CHHHHHHHhh----hCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-Hc
Q 027515 122 TPEEVQQHFQ----SCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LL 169 (222)
Q Consensus 122 t~~~L~~~F~----~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l 169 (222)
+.-+|..+|. .+|-|+.+.|...+....+...++.|.+..++..++ .+
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHH
Confidence 3456777665 678899988877765555677788999999998888 54
No 191
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=29.36 E-value=59 Score=27.66 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=22.8
Q ss_pred EEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 153 AYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 153 afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
|||+|.+..+|+.|+ .+.... .+.++|..|..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 799999999999998 433332 25557777653
No 192
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=28.85 E-value=80 Score=26.32 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=18.8
Q ss_pred EEEEeccCCCCCHHHHHHHhhh
Q 027515 111 SIYVGNVDYACTPEEVQQHFQS 132 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~ 132 (222)
.++|+|||+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888754
No 193
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.53 E-value=2.7e+02 Score=21.32 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=38.7
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhC---CCeeEEEEeeCC-C---------CCccc-EEEEEEcCHH
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSC---GTVNRVTILTDK-F---------GQPKG-FAYVEFVEID 161 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~---G~i~~v~i~~~~-t---------~~~kg-~afV~f~~~~ 161 (222)
...||+.-++..+++++.+...++- +.+.+|++-+.. + ...+. |-+|.|.+-.
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 3689999999999999999999865 466777764332 1 12334 8889998754
No 194
>PRK11901 hypothetical protein; Reviewed
Probab=27.56 E-value=3.2e+02 Score=23.77 Aligned_cols=59 Identities=10% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEE--EEcCHHHHHHHH-HcCC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYV--EFVEIDAVQNAL-LLNE 171 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV--~f~~~~~a~~al-~l~g 171 (222)
...+|-|-.+ ...+.|..|..+++ +..+++.... .|+. .|..| .|.+.+.|..|+ .|..
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 4455655544 45777888888876 4445555433 3443 45433 688999999999 7764
No 195
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=26.32 E-value=72 Score=20.33 Aligned_cols=22 Identities=14% Similarity=0.481 Sum_probs=15.5
Q ss_pred EEEEeeCCCCCcccEEEEEEcC
Q 027515 138 RVTILTDKFGQPKGFAYVEFVE 159 (222)
Q Consensus 138 ~v~i~~~~t~~~kg~afV~f~~ 159 (222)
.++++.++...+.|+++|.|.+
T Consensus 19 ~arllLnrRps~~G~~WiKyED 40 (60)
T PF06613_consen 19 PARLLLNRRPSSEGLAWIKYED 40 (60)
T ss_dssp EEEE-TTB--SSTTEEEEEETT
T ss_pred hhhhhhccCCCcCCeEEEEEcc
Confidence 4677777766789999999975
No 196
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=26.23 E-value=58 Score=22.48 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=27.3
Q ss_pred cEEEEeccCCCCCHHHHHHHhhh-CCCeeEEEEeeCCCCCcccEEEEEEcC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQS-CGTVNRVTILTDKFGQPKGFAYVEFVE 159 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~~t~~~kg~afV~f~~ 159 (222)
.-|||++++..+.+.--..+-.. .+. -++-+ ..++....||+|-++..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm-~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPK-GSLVI-TWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEE-EEeCCCCCCcEEEecCC
Confidence 34999999888776543333333 222 12222 22334466899988764
No 197
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=25.09 E-value=2.8e+02 Score=21.44 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=26.1
Q ss_pred EEEEeccCCCCCHHHHHHHhhh-CC-CeeEEEEee
Q 027515 111 SIYVGNVDYACTPEEVQQHFQS-CG-TVNRVTILT 143 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~ 143 (222)
..|+-.++..+|-.+|+.+|.. || .|..|+.+.
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~ 57 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFN 57 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEe
Confidence 4677788999999999999987 66 666776654
No 198
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=25.07 E-value=85 Score=26.70 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=21.2
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeE
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNR 138 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~ 138 (222)
.+.|.|||+.++...|..++.....+..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~ 130 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRC 130 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCce
Confidence 4778999999999998888864333333
No 199
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=24.38 E-value=58 Score=18.51 Aligned_cols=16 Identities=6% Similarity=0.216 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHhhhCC
Q 027515 119 YACTPEEVQQHFQSCG 134 (222)
Q Consensus 119 ~~~t~~~L~~~F~~~G 134 (222)
..+++.+|+..|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998764
No 200
>CHL00052 rpl2 ribosomal protein L2
Probab=23.56 E-value=15 Score=31.00 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=18.6
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCe
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTV 136 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i 136 (222)
....++-+++||..+...-|......-|++
T Consensus 123 ~~Gn~lpL~~IP~Gt~I~NIE~~pg~Ggk~ 152 (273)
T CHL00052 123 KIGNALPLTNIPLGTAIHNIEITPGKGGQL 152 (273)
T ss_pred CcccccccccCCCCCEEEEEEecCCCCceE
Confidence 446778888888887766555444443433
No 201
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=23.22 E-value=1e+02 Score=25.24 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.5
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCC
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCG 134 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G 134 (222)
.+.|+|||+.++..-|..++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 478999999999999999987554
No 202
>PHA01632 hypothetical protein
Probab=22.27 E-value=93 Score=19.53 Aligned_cols=21 Identities=24% Similarity=0.293 Sum_probs=17.0
Q ss_pred EEEeccCCCCCHHHHHHHhhh
Q 027515 112 IYVGNVDYACTPEEVQQHFQS 132 (222)
Q Consensus 112 vfV~nLp~~~t~~~L~~~F~~ 132 (222)
|.|-.+|...|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345589999999999988764
No 203
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=21.25 E-value=85 Score=33.59 Aligned_cols=42 Identities=26% Similarity=0.503 Sum_probs=0.0
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCccccCCCCCCCCCCCCccc
Q 027515 18 DEMDADIDVDEHEHEHDHDHDHEHEHDADNENEEDPNANSKD 59 (222)
Q Consensus 18 ~e~~~d~d~~~~~~~~~e~~d~~~~~~~~~~~~~~~~e~~~d 59 (222)
|++|+++|++++++++++++.++.+.--.=++++..++..++
T Consensus 154 d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~de~~~~~~ge~ 195 (2849)
T PTZ00415 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGED 195 (2849)
T ss_pred CCccccccccccccccccccccccccccCCCchhccCCCCcc
No 204
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.03 E-value=46 Score=21.73 Aligned_cols=28 Identities=11% Similarity=0.332 Sum_probs=18.9
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhh
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQ 131 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~ 131 (222)
.-...+++||||.+|...-.+.=..++.
T Consensus 22 ~Ls~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 22 ELSLTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HHHHcCceEEECCCChHHHHcCcchHHH
Confidence 3345688999999998765554444443
No 205
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=21.00 E-value=2.4e+02 Score=25.04 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHhh----hCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH
Q 027515 119 YACTPEEVQQHFQ----SCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL 167 (222)
Q Consensus 119 ~~~t~~~L~~~F~----~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al 167 (222)
...+--+|..+|. .+|-|+.+.|...+....+.+.++.|.+.+++..++
T Consensus 142 ~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~ 194 (413)
T TIGR00387 142 KDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAV 194 (413)
T ss_pred CCCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHH
Confidence 3444456777774 378899988877776566677788999999988887
No 206
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.99 E-value=1.8e+02 Score=19.76 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=28.5
Q ss_pred CeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCcee--CCeeeEEeec
Q 027515 135 TVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETEL--HGRQLKVSAK 184 (222)
Q Consensus 135 ~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l--~gr~i~v~~a 184 (222)
.|+.|+|..-. .++-++||=|+|.+ ++.+++..| +.+-|.|...
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd------~f~I~~ikVieg~~GlFVaMP 48 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD------CFVIHDIKVIEGEKGLFVAMP 48 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT------TEEEEEEEEEEETTEEEEE--
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC------EEEEEeEEEEECCCCcEEECC
Confidence 47788887766 58899999999986 335565554 2233666554
No 207
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=20.55 E-value=2.2e+02 Score=24.64 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=6.6
Q ss_pred CCCCCHHHHHHHh
Q 027515 118 DYACTPEEVQQHF 130 (222)
Q Consensus 118 p~~~t~~~L~~~F 130 (222)
...++..+|..+.
T Consensus 228 ~~~v~~~dIe~~~ 240 (324)
T PF05285_consen 228 DELVDPSDIEGFH 240 (324)
T ss_pred cccCCHHHHHhHH
Confidence 3445555555444
No 208
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=20.54 E-value=1.2e+02 Score=23.43 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=4.4
Q ss_pred CCeeEEEEee
Q 027515 134 GTVNRVTILT 143 (222)
Q Consensus 134 G~i~~v~i~~ 143 (222)
+.|.+..|.+
T Consensus 119 ~~v~F~lLtK 128 (170)
T PF04050_consen 119 GKVAFTLLTK 128 (170)
T ss_dssp -EEEEEEEEE
T ss_pred CeEEEEEEEE
Confidence 4555554443
No 209
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.01 E-value=1.3e+02 Score=19.56 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=18.6
Q ss_pred cEEEEEEcCHHHHHHHH-HcCCceeC
Q 027515 151 GFAYVEFVEIDAVQNAL-LLNETELH 175 (222)
Q Consensus 151 g~afV~f~~~~~a~~al-~l~g~~l~ 175 (222)
.+.+|.|.|...|-+|- .|....|.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46899999999988887 56544443
Done!