Query 027515
Match_columns 222
No_of_seqs 235 out of 2074
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 18:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 9.4E-24 3.2E-28 150.2 11.8 79 108-186 18-98 (99)
2 1h2v_Z 20 kDa nuclear CAP bind 99.9 3.5E-23 1.2E-27 158.8 12.9 87 106-192 36-124 (156)
3 2lxi_A RNA-binding protein 10; 99.9 2.8E-23 9.6E-28 145.5 7.8 81 109-189 1-85 (91)
4 2dgo_A Cytotoxic granule-assoc 99.9 1.2E-21 4.2E-26 142.5 15.7 86 104-189 10-97 (115)
5 3s8s_A Histone-lysine N-methyl 99.9 3.9E-22 1.3E-26 144.5 12.1 81 107-187 4-86 (110)
6 1u6f_A Tcubp1, RNA-binding pro 99.9 8.5E-22 2.9E-26 148.0 14.2 86 103-188 36-123 (139)
7 2fy1_A RNA-binding motif prote 99.9 8E-22 2.7E-26 144.1 13.6 82 107-188 5-87 (116)
8 2cqd_A RNA-binding region cont 99.9 1.6E-21 5.4E-26 142.2 15.1 85 103-188 11-97 (116)
9 3ex7_B RNA-binding protein 8A; 99.9 2.2E-22 7.6E-27 148.8 10.3 85 105-189 18-104 (126)
10 1rk8_A CG8781-PA, CG8781-PA pr 99.9 3.5E-22 1.2E-26 154.7 11.5 85 105-189 68-154 (165)
11 2cpz_A CUG triplet repeat RNA- 99.9 1.2E-21 4E-26 142.7 13.6 86 103-188 19-106 (115)
12 1x5u_A Splicing factor 3B subu 99.9 8E-22 2.7E-26 141.2 12.4 86 104-189 10-97 (105)
13 2cq0_A Eukaryotic translation 99.9 1E-21 3.5E-26 140.2 12.9 85 104-188 10-96 (103)
14 2dnz_A Probable RNA-binding pr 99.9 1E-21 3.5E-26 138.0 12.5 83 107-189 3-87 (95)
15 2do4_A Squamous cell carcinoma 99.9 1.3E-21 4.5E-26 138.9 13.1 85 104-188 12-97 (100)
16 2dgs_A DAZ-associated protein 99.9 1.3E-21 4.6E-26 138.6 12.5 82 107-188 8-90 (99)
17 2lkz_A RNA-binding protein 5; 99.9 1.5E-22 5.3E-27 142.9 7.4 80 107-186 7-94 (95)
18 2dnh_A Bruno-like 5, RNA bindi 99.9 1.7E-21 5.9E-26 139.4 12.9 84 106-189 12-99 (105)
19 2cph_A RNA binding motif prote 99.9 1.4E-21 4.6E-26 140.4 12.4 86 104-189 10-99 (107)
20 2d9p_A Polyadenylate-binding p 99.9 1.6E-21 5.3E-26 139.2 12.6 84 105-189 11-95 (103)
21 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.1E-21 3.7E-26 135.6 11.3 80 108-187 5-86 (87)
22 1whw_A Hypothetical protein ri 99.9 1.8E-21 6E-26 137.9 12.6 83 107-189 6-90 (99)
23 3ucg_A Polyadenylate-binding p 99.9 1.1E-21 3.8E-26 136.1 11.3 83 108-190 5-88 (89)
24 2do0_A HnRNP M, heterogeneous 99.9 5.3E-21 1.8E-25 138.9 15.4 83 106-188 12-95 (114)
25 2dnm_A SRP46 splicing factor; 99.9 7.4E-22 2.5E-26 140.9 10.6 84 106-189 10-95 (103)
26 3md1_A Nuclear and cytoplasmic 99.9 1.6E-21 5.3E-26 133.6 11.8 80 109-188 1-82 (83)
27 1x4h_A RNA-binding protein 28; 99.9 1.9E-21 6.5E-26 140.5 12.8 84 105-188 11-102 (111)
28 2dng_A Eukaryotic translation 99.9 3.1E-21 1E-25 137.8 13.6 82 106-188 12-94 (103)
29 1wi8_A EIF-4B, eukaryotic tran 99.9 2E-21 6.7E-26 139.0 12.6 82 107-189 13-96 (104)
30 1x5t_A Splicing factor 3B subu 99.9 1.2E-21 4E-26 138.0 11.1 81 108-188 4-87 (96)
31 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.2E-21 4E-26 139.6 11.0 82 107-188 10-93 (102)
32 1p27_B RNA-binding protein 8A; 99.9 1.3E-21 4.5E-26 140.3 11.0 84 106-189 20-105 (106)
33 2dhg_A TRNA selenocysteine ass 99.9 1.8E-21 6.1E-26 139.1 11.6 82 107-188 7-91 (104)
34 2dgp_A Bruno-like 4, RNA bindi 99.9 1.5E-21 5.1E-26 140.0 11.1 84 105-188 9-97 (106)
35 1x5s_A Cold-inducible RNA-bind 99.9 1.6E-21 5.4E-26 138.9 11.1 83 107-189 10-94 (102)
36 2cqc_A Arginine/serine-rich sp 99.9 2.5E-21 8.4E-26 136.0 11.9 81 106-186 12-94 (95)
37 3q2s_C Cleavage and polyadenyl 99.9 2.7E-22 9.1E-27 163.4 7.7 79 108-186 67-149 (229)
38 2cpe_A RNA-binding protein EWS 99.9 2.5E-21 8.5E-26 140.5 12.0 86 104-189 10-105 (113)
39 1x4b_A Heterogeneous nuclear r 99.9 2.9E-21 9.8E-26 140.8 12.2 84 105-188 23-107 (116)
40 4f25_A Polyadenylate-binding p 99.9 1.9E-21 6.4E-26 141.9 11.1 79 109-188 5-84 (115)
41 2ywk_A Putative RNA-binding pr 99.9 2.1E-21 7.1E-26 136.4 11.0 82 105-186 12-94 (95)
42 2e5h_A Zinc finger CCHC-type a 99.9 2.9E-21 9.9E-26 135.4 11.6 81 105-185 12-94 (94)
43 2cq3_A RNA-binding protein 9; 99.9 8.5E-21 2.9E-25 135.4 14.2 84 104-188 10-94 (103)
44 2cqi_A Nucleolysin TIAR; RNA r 99.9 7.2E-21 2.5E-25 135.8 13.8 83 105-188 11-94 (103)
45 3s7r_A Heterogeneous nuclear r 99.9 3.2E-21 1.1E-25 133.3 11.5 79 106-184 8-87 (87)
46 1oo0_B CG8781-PA, drosophila Y 99.9 2.3E-21 7.9E-26 140.0 11.1 85 105-189 22-108 (110)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.9E-21 6.5E-26 133.8 10.2 79 107-185 5-85 (85)
48 1s79_A Lupus LA protein; RRM, 99.9 1.1E-21 3.7E-26 140.6 9.2 80 107-186 9-88 (103)
49 2cqg_A TDP-43, TAR DNA-binding 99.9 8.4E-21 2.9E-25 135.4 13.8 86 103-189 9-95 (103)
50 3pgw_S U1-70K; protein-RNA com 99.9 1E-20 3.6E-25 167.3 17.5 82 107-188 100-183 (437)
51 3p5t_L Cleavage and polyadenyl 99.9 4.5E-22 1.5E-26 138.8 6.8 80 110-189 2-85 (90)
52 2jrs_A RNA-binding protein 39; 99.9 2.4E-21 8.1E-26 139.9 10.7 86 103-188 20-107 (108)
53 2x1f_A MRNA 3'-END-processing 99.9 3.5E-21 1.2E-25 135.8 11.3 80 109-188 2-83 (96)
54 2m2b_A RNA-binding protein 10; 99.9 8E-22 2.7E-26 147.0 8.3 85 104-189 18-110 (131)
55 2jwn_A Embryonic polyadenylate 99.9 2.8E-21 9.5E-26 142.5 11.1 86 105-190 32-118 (124)
56 2dh8_A DAZ-associated protein 99.9 3.4E-21 1.2E-25 137.9 10.7 84 105-188 12-96 (105)
57 1wez_A HnRNP H', FTP-3, hetero 99.9 3.4E-21 1.2E-25 137.7 10.5 82 106-188 12-93 (102)
58 2la6_A RNA-binding protein FUS 99.9 4.6E-21 1.6E-25 135.9 11.1 80 106-185 10-99 (99)
59 2rs2_A Musashi-1, RNA-binding 99.9 5.5E-21 1.9E-25 138.1 11.6 87 102-188 18-105 (109)
60 2cpy_A RNA-binding protein 12; 99.9 6.1E-22 2.1E-26 144.2 6.5 83 106-188 12-95 (114)
61 2dgu_A Heterogeneous nuclear r 99.9 1.4E-20 4.9E-25 134.3 13.4 78 107-191 9-87 (103)
62 2khc_A Testis-specific RNP-typ 99.8 5.7E-21 1.9E-25 139.6 11.2 81 105-185 36-118 (118)
63 2cpf_A RNA binding motif prote 99.8 8.6E-21 2.9E-25 134.1 11.7 82 107-188 3-89 (98)
64 3ns6_A Eukaryotic translation 99.8 7.7E-22 2.6E-26 140.4 6.2 80 108-187 5-93 (100)
65 1x4c_A Splicing factor, argini 99.8 2.1E-20 7.2E-25 134.7 13.8 80 107-192 13-98 (108)
66 1x4a_A Splicing factor, argini 99.8 2.7E-20 9.1E-25 134.2 14.2 83 104-188 17-100 (109)
67 2div_A TRNA selenocysteine ass 99.8 6.2E-21 2.1E-25 135.1 10.6 82 107-188 7-95 (99)
68 4a8x_A RNA-binding protein wit 99.8 4.8E-21 1.6E-25 132.5 9.8 82 108-189 3-87 (88)
69 2cq4_A RNA binding motif prote 99.8 1E-21 3.5E-26 142.8 6.6 85 104-188 20-105 (114)
70 2dgv_A HnRNP M, heterogeneous 99.8 9.3E-21 3.2E-25 132.3 10.8 82 107-189 6-88 (92)
71 2kxn_B Transformer-2 protein h 99.8 4.8E-21 1.6E-25 142.6 9.8 85 105-189 42-128 (129)
72 2cqp_A RNA-binding protein 12; 99.8 5.9E-21 2E-25 134.9 9.8 83 106-188 12-96 (98)
73 2db1_A Heterogeneous nuclear r 99.8 1.8E-21 6.3E-26 142.6 7.4 82 106-187 14-98 (118)
74 3ulh_A THO complex subunit 4; 99.8 1.4E-20 4.7E-25 135.1 11.8 79 107-185 27-106 (107)
75 2dis_A Unnamed protein product 99.8 1.4E-20 4.8E-25 135.5 11.8 83 107-189 6-94 (109)
76 2dgw_A Probable RNA-binding pr 99.8 2.4E-20 8.1E-25 130.1 12.1 81 107-188 8-88 (91)
77 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.8E-21 6.2E-26 138.4 6.4 86 102-188 12-99 (100)
78 2cpi_A CCR4-NOT transcription 99.8 1.7E-20 5.9E-25 135.9 11.5 84 105-188 11-102 (111)
79 1wg5_A Heterogeneous nuclear r 99.8 2.4E-20 8.1E-25 133.6 11.8 81 107-187 13-94 (104)
80 1p1t_A Cleavage stimulation fa 99.8 4.9E-21 1.7E-25 136.7 8.0 82 107-188 6-89 (104)
81 2fc9_A NCL protein; structure 99.8 2.9E-20 9.8E-25 132.2 12.0 81 105-188 11-92 (101)
82 2dgx_A KIAA0430 protein; RRM d 99.8 2.5E-20 8.7E-25 131.5 11.5 80 107-188 7-91 (96)
83 2err_A Ataxin-2-binding protei 99.8 1.2E-20 4E-25 136.4 9.8 87 100-187 20-107 (109)
84 2dnn_A RNA-binding protein 12; 99.8 1.6E-20 5.4E-25 135.8 10.2 80 107-187 14-93 (109)
85 3n9u_C Cleavage and polyadenyl 99.8 2.3E-20 7.8E-25 143.3 11.5 79 108-186 54-136 (156)
86 2mss_A Protein (musashi1); RNA 99.8 6.1E-21 2.1E-25 128.3 7.3 74 111-184 1-75 (75)
87 2kn4_A Immunoglobulin G-bindin 99.8 3.3E-20 1.1E-24 142.2 12.2 84 106-189 67-152 (158)
88 2hgn_A Heterogeneous nuclear r 99.8 1.6E-21 5.4E-26 146.9 4.7 83 105-188 42-124 (139)
89 2fc8_A NCL protein; structure 99.8 5.2E-20 1.8E-24 131.0 12.2 83 104-189 10-94 (102)
90 2ek1_A RNA-binding protein 12; 99.8 1.2E-20 4E-25 132.6 8.1 80 107-186 13-94 (95)
91 2cq1_A PTB-like protein L; RRM 99.8 1E-19 3.5E-24 129.7 12.9 78 106-188 12-92 (101)
92 2lea_A Serine/arginine-rich sp 99.8 1.2E-20 4.2E-25 141.4 8.4 86 104-189 42-129 (135)
93 1x4e_A RNA binding motif, sing 99.8 5E-21 1.7E-25 131.8 5.7 79 107-185 3-83 (85)
94 2kt5_A RNA and export factor-b 99.8 8.8E-20 3E-24 134.5 12.3 84 105-188 31-115 (124)
95 1sjq_A Polypyrimidine tract-bi 99.8 4.4E-20 1.5E-24 132.1 10.0 77 107-188 14-93 (105)
96 2nlw_A Eukaryotic translation 99.8 2.7E-20 9.4E-25 133.5 8.9 81 106-187 12-100 (105)
97 2dgt_A RNA-binding protein 30; 99.8 1.4E-19 4.9E-24 126.4 12.4 76 106-188 7-83 (92)
98 3beg_B Splicing factor, argini 99.8 2.6E-20 8.9E-25 135.8 8.8 80 107-192 14-99 (115)
99 2dnq_A RNA-binding protein 4B; 99.8 1.3E-19 4.4E-24 126.1 12.0 76 107-189 6-82 (90)
100 3r27_A HnRNP L, heterogeneous 99.8 6.3E-20 2.1E-24 130.2 10.4 77 107-188 19-98 (100)
101 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 8.7E-20 3E-24 136.8 11.8 81 104-184 58-140 (140)
102 2cpd_A Apobec-1 stimulating pr 99.8 2.2E-19 7.4E-24 127.2 13.2 77 105-188 11-90 (99)
103 2ki2_A SS-DNA binding protein 99.8 7.6E-21 2.6E-25 132.3 5.4 78 110-188 2-81 (90)
104 1x5o_A RNA binding motif, sing 99.8 1.3E-19 4.4E-24 131.6 12.1 84 104-187 20-112 (114)
105 2cpx_A Hypothetical protein FL 99.8 2.7E-20 9.2E-25 135.3 8.5 83 107-189 23-107 (115)
106 2cpj_A Non-POU domain-containi 99.8 1.4E-19 4.7E-24 128.2 11.5 80 105-189 11-91 (99)
107 2hgl_A HNRPF protein, heteroge 99.8 3.7E-20 1.3E-24 138.9 9.0 81 106-186 41-124 (136)
108 2jvo_A Nucleolar protein 3; nu 99.8 8.1E-20 2.8E-24 131.8 10.4 83 100-189 22-105 (108)
109 1x4d_A Matrin 3; structural ge 99.8 5.8E-20 2E-24 131.2 9.4 77 107-188 13-93 (102)
110 2dnp_A RNA-binding protein 14; 99.8 1.6E-19 5.4E-24 125.7 11.4 75 107-188 7-82 (90)
111 2a3j_A U1 small nuclear ribonu 99.8 7.6E-20 2.6E-24 135.7 10.2 80 107-188 27-111 (127)
112 1fj7_A Nucleolin RBD1, protein 99.8 1.1E-20 3.7E-25 134.4 5.2 81 107-188 15-96 (101)
113 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.9E-20 6.6E-25 126.3 6.0 74 110-184 1-76 (77)
114 1x4g_A Nucleolysin TIAR; struc 99.8 2.2E-19 7.6E-24 129.4 11.9 78 106-188 22-100 (109)
115 1iqt_A AUF1, heterogeneous nuc 99.8 1.6E-20 5.5E-25 126.2 5.3 74 111-184 1-75 (75)
116 1wex_A Hypothetical protein (r 99.8 2.1E-19 7.3E-24 128.8 11.5 77 107-188 13-92 (104)
117 2krb_A Eukaryotic translation 99.8 3E-20 1E-24 126.9 6.6 73 109-182 1-81 (81)
118 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-19 4E-24 124.9 9.2 72 109-185 7-79 (89)
119 2xnq_A Nuclear polyadenylated 99.8 2.5E-19 8.5E-24 126.7 11.2 81 101-188 14-96 (97)
120 2e5j_A Methenyltetrahydrofolat 99.8 2E-19 6.8E-24 127.0 10.7 79 106-188 16-95 (97)
121 2lcw_A RNA-binding protein FUS 99.7 1.7E-21 5.9E-26 142.1 0.0 82 107-188 5-96 (116)
122 1wel_A RNA-binding protein 12; 99.8 4.3E-20 1.5E-24 136.3 7.5 82 106-187 22-104 (124)
123 2hvz_A Splicing factor, argini 99.8 1.5E-19 5.1E-24 128.4 10.0 75 110-188 1-76 (101)
124 2lmi_A GRSF-1, G-rich sequence 99.8 3E-20 1E-24 133.7 6.4 82 106-187 8-92 (107)
125 2jvr_A Nucleolar protein 3; RN 99.8 1.2E-19 4E-24 131.5 9.4 79 107-188 26-106 (111)
126 1why_A Hypothetical protein ri 99.8 3.6E-19 1.2E-23 125.6 11.3 78 106-188 14-94 (97)
127 2ytc_A PRE-mRNA-splicing facto 99.8 2.7E-19 9.1E-24 123.0 10.3 75 106-185 9-85 (85)
128 1x4f_A Matrin 3; structural ge 99.8 2.9E-19 1E-23 129.4 10.9 78 106-188 22-103 (112)
129 1nu4_A U1A RNA binding domain; 99.8 8.3E-20 2.8E-24 128.7 7.8 80 107-188 6-90 (97)
130 2dha_A FLJ20171 protein; RRM d 99.8 6.9E-20 2.4E-24 135.1 7.7 80 107-186 21-104 (123)
131 2xs2_A Deleted in azoospermia- 99.8 7.8E-20 2.7E-24 130.1 7.7 81 107-188 7-87 (102)
132 2la4_A Nuclear and cytoplasmic 99.8 1.8E-19 6.2E-24 128.0 9.5 76 107-187 25-101 (101)
133 1fjc_A Nucleolin RBD2, protein 99.8 1.3E-19 4.4E-24 127.5 8.4 79 106-188 13-92 (96)
134 2kvi_A Nuclear polyadenylated 99.8 1.6E-19 5.3E-24 127.3 8.8 75 107-188 8-84 (96)
135 1wf1_A RNA-binding protein RAL 99.8 4.2E-19 1.4E-23 128.1 11.3 75 107-188 25-101 (110)
136 2ad9_A Polypyrimidine tract-bi 99.8 2.6E-19 8.9E-24 131.1 9.9 77 107-188 29-108 (119)
137 2cqh_A IGF-II mRNA-binding pro 99.8 3.6E-19 1.2E-23 124.5 9.9 76 107-188 6-84 (93)
138 2hgm_A HNRPF protein, heteroge 99.8 1.2E-19 4E-24 134.4 7.6 79 107-186 40-120 (126)
139 3egn_A RNA-binding protein 40; 99.8 1.6E-19 5.6E-24 136.3 8.4 83 107-189 43-132 (143)
140 4f02_A Polyadenylate-binding p 99.8 6.8E-19 2.3E-23 141.3 12.0 81 107-187 13-95 (213)
141 3lqv_A PRE-mRNA branch site pr 99.8 6.2E-19 2.1E-23 128.1 10.2 79 107-187 6-85 (115)
142 1whx_A Hypothetical protein ri 99.8 3.3E-19 1.1E-23 129.2 8.6 77 107-188 8-85 (111)
143 2e5g_A U6 snRNA-specific termi 99.8 1.6E-18 5.5E-23 121.6 11.8 77 107-188 6-83 (94)
144 1x5p_A Negative elongation fac 99.8 4.1E-18 1.4E-22 120.2 13.6 77 105-188 11-88 (97)
145 1l3k_A Heterogeneous nuclear r 99.8 1.5E-18 5.1E-23 136.6 12.1 83 107-189 102-185 (196)
146 2i2y_A Fusion protein consists 99.8 7.8E-19 2.7E-23 133.5 10.1 81 104-188 68-149 (150)
147 2f3j_A RNA and export factor b 99.8 9.7E-19 3.3E-23 136.9 10.1 81 107-187 86-167 (177)
148 1l3k_A Heterogeneous nuclear r 99.8 2.3E-18 7.8E-23 135.5 11.9 83 106-188 10-93 (196)
149 1fxl_A Paraneoplastic encephal 99.8 3E-18 1E-22 131.1 12.1 80 109-188 2-83 (167)
150 3zzy_A Polypyrimidine tract-bi 99.8 5.2E-18 1.8E-22 125.8 12.3 76 109-188 28-107 (130)
151 3md3_A Nuclear and cytoplasmic 99.8 4.5E-18 1.5E-22 130.0 12.3 81 105-185 83-165 (166)
152 1b7f_A Protein (SXL-lethal pro 99.8 3.2E-18 1.1E-22 131.4 10.9 81 108-188 2-84 (168)
153 3md3_A Nuclear and cytoplasmic 99.8 4.8E-18 1.7E-22 129.8 11.8 79 110-188 1-80 (166)
154 2qfj_A FBP-interacting repress 99.8 4.9E-18 1.7E-22 135.5 12.2 82 107-188 123-206 (216)
155 2cjk_A Nuclear polyadenylated 99.8 1.5E-18 5.3E-23 133.1 8.9 81 107-187 85-166 (167)
156 1sjr_A Polypyrimidine tract-bi 99.8 5.7E-18 1.9E-22 130.2 11.5 77 109-188 46-125 (164)
157 1wg1_A KIAA1579 protein, homol 99.8 3.1E-18 1.1E-22 118.7 9.0 75 108-188 4-79 (88)
158 2e44_A Insulin-like growth fac 99.8 3.6E-18 1.2E-22 120.0 9.2 79 107-188 13-93 (96)
159 3d2w_A TAR DNA-binding protein 99.8 3.6E-18 1.2E-22 118.9 8.8 77 107-188 9-85 (89)
160 2voo_A Lupus LA protein; RNA-b 99.8 7.5E-18 2.6E-22 133.6 11.7 81 107-187 107-187 (193)
161 2yh0_A Splicing factor U2AF 65 99.7 1.1E-17 3.8E-22 131.7 12.6 82 107-188 112-195 (198)
162 1wf0_A TDP-43, TAR DNA-binding 99.7 3.4E-18 1.2E-22 118.4 8.1 76 108-188 4-79 (88)
163 2j8a_A Histone-lysine N-methyl 99.7 4.8E-18 1.6E-22 124.6 9.2 77 110-186 3-95 (136)
164 2g4b_A Splicing factor U2AF 65 99.7 8.9E-18 3.1E-22 129.4 10.6 78 107-184 92-171 (172)
165 2diu_A KIAA0430 protein; struc 99.7 1.6E-17 5.4E-22 115.4 10.4 74 109-191 8-88 (96)
166 4f02_A Polyadenylate-binding p 99.7 9.6E-18 3.3E-22 134.6 10.2 80 108-188 102-182 (213)
167 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-17 5.2E-22 120.8 10.3 76 107-185 6-86 (114)
168 2hzc_A Splicing factor U2AF 65 99.7 1.8E-17 6.3E-22 114.1 9.4 72 107-183 4-86 (87)
169 3nmr_A Cugbp ELAV-like family 99.7 2.4E-17 8E-22 127.2 10.9 80 106-185 92-175 (175)
170 2qfj_A FBP-interacting repress 99.7 2.5E-17 8.7E-22 131.4 10.0 81 107-187 26-108 (216)
171 1b7f_A Protein (SXL-lethal pro 99.7 4.7E-17 1.6E-21 124.8 11.1 79 106-184 86-168 (168)
172 2cq2_A Hypothetical protein LO 99.7 3.1E-17 1.1E-21 118.9 9.3 76 108-188 24-107 (114)
173 3tyt_A Heterogeneous nuclear r 99.7 4E-17 1.4E-21 130.5 10.7 76 108-187 3-80 (205)
174 2pe8_A Splicing factor 45; RRM 99.7 9.7E-17 3.3E-21 115.0 11.6 80 107-186 6-93 (105)
175 2bz2_A Negative elongation fac 99.7 4.1E-17 1.4E-21 119.9 9.6 76 106-188 36-112 (121)
176 2e5i_A Heterogeneous nuclear r 99.7 1.3E-16 4.4E-21 117.6 12.2 74 110-188 26-103 (124)
177 1fje_B Nucleolin RBD12, protei 99.7 5.8E-17 2E-21 125.4 10.3 78 106-187 96-174 (175)
178 1fxl_A Paraneoplastic encephal 99.7 8.4E-17 2.9E-21 123.0 11.1 79 106-184 85-167 (167)
179 2cjk_A Nuclear polyadenylated 99.7 3E-17 1E-21 125.9 8.5 79 108-187 2-81 (167)
180 3nmr_A Cugbp ELAV-like family 99.7 8.1E-17 2.8E-21 124.1 9.7 81 108-188 2-89 (175)
181 3pgw_A U1-A; protein-RNA compl 99.7 1.4E-16 4.7E-21 132.6 11.0 81 106-188 6-91 (282)
182 3smz_A Protein raver-1, ribonu 99.7 2E-16 6.9E-21 131.7 11.8 84 106-189 181-266 (284)
183 2ghp_A U4/U6 snRNA-associated 99.7 1.4E-16 4.8E-21 133.2 10.6 83 106-188 207-292 (292)
184 3u1l_A PRE-mRNA-splicing facto 99.7 7.4E-17 2.5E-21 131.5 8.3 78 106-188 131-230 (240)
185 2adc_A Polypyrimidine tract-bi 99.7 3E-16 1E-20 127.2 10.1 78 106-187 31-110 (229)
186 2dit_A HIV TAT specific factor 99.7 1.7E-15 5.7E-20 109.6 12.8 80 106-188 12-103 (112)
187 1fje_B Nucleolin RBD12, protei 99.7 5.4E-17 1.9E-21 125.6 5.1 83 106-188 10-92 (175)
188 3smz_A Protein raver-1, ribonu 99.7 8.6E-16 2.9E-20 127.9 12.6 82 107-188 93-176 (284)
189 2ghp_A U4/U6 snRNA-associated 99.6 7.1E-16 2.4E-20 128.9 11.1 82 105-187 37-118 (292)
190 2yh0_A Splicing factor U2AF 65 99.6 2.1E-15 7.3E-20 118.6 12.5 76 108-188 3-89 (198)
191 1qm9_A Polypyrimidine tract-bi 99.6 8.7E-16 3E-20 121.2 10.0 76 109-188 3-80 (198)
192 3pgw_A U1-A; protein-RNA compl 99.6 1.5E-15 5.3E-20 126.2 11.7 76 106-185 204-281 (282)
193 3sde_A Paraspeckle component 1 99.6 1.4E-15 4.7E-20 125.6 11.2 77 105-186 18-95 (261)
194 1jmt_A Splicing factor U2AF 35 99.6 2.7E-16 9.3E-21 112.5 4.8 71 114-184 20-103 (104)
195 2g4b_A Splicing factor U2AF 65 99.6 2.9E-15 9.9E-20 115.2 10.9 76 108-188 3-89 (172)
196 3sde_A Paraspeckle component 1 99.6 2.8E-15 9.6E-20 123.8 10.2 80 108-187 95-179 (261)
197 3tyt_A Heterogeneous nuclear r 99.6 1.8E-15 6.1E-20 121.0 8.6 76 108-184 122-204 (205)
198 3v4m_A Splicing factor U2AF 65 99.6 2.9E-15 9.8E-20 107.3 8.8 79 108-186 4-96 (105)
199 2adc_A Polypyrimidine tract-bi 99.6 6.8E-15 2.3E-19 119.1 11.6 77 107-187 149-228 (229)
200 1qm9_A Polypyrimidine tract-bi 99.6 3.4E-15 1.2E-19 117.8 9.5 77 107-187 118-197 (198)
201 3ue2_A Poly(U)-binding-splicin 99.6 1.5E-14 5.2E-19 105.6 9.4 79 108-186 19-108 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 7.7E-14 2.6E-18 98.9 11.9 75 109-189 10-92 (100)
203 3tht_A Alkylated DNA repair pr 99.5 2.2E-13 7.4E-18 116.5 9.5 73 107-184 16-96 (345)
204 3s6e_A RNA-binding protein 39; 99.4 1.1E-12 3.9E-17 95.0 9.8 77 107-186 5-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 3.7E-12 1.3E-16 87.6 9.2 74 107-187 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 2.5E-11 8.4E-16 88.5 8.8 73 107-184 16-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 6.7E-11 2.3E-15 81.7 7.1 72 107-185 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 6.1E-10 2.1E-14 89.4 8.2 65 121-185 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.7 8.1E-08 2.8E-12 67.8 8.8 72 108-184 20-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.2 5.7E-05 1.9E-09 52.7 12.9 81 108-195 7-92 (104)
211 1wey_A Calcipressin 1; structu 97.9 2.9E-05 1E-09 54.4 6.9 74 109-187 5-84 (104)
212 1uw4_A UPF3X; nonsense mediate 97.7 0.00029 1E-08 48.3 8.7 66 110-175 2-71 (91)
213 1wwh_A Nucleoporin 35, nucleop 97.5 0.00076 2.6E-08 48.4 9.5 73 107-185 22-95 (119)
214 1whv_A Poly(A)-specific ribonu 97.2 0.002 6.8E-08 44.4 7.8 53 109-169 16-69 (100)
215 3p3d_A Nucleoporin 53; structu 97.0 0.0015 5E-08 47.6 6.2 75 110-185 8-97 (132)
216 3ctr_A Poly(A)-specific ribonu 97.0 0.0014 4.9E-08 45.3 5.6 53 110-170 7-60 (101)
217 3pq1_A Poly(A) RNA polymerase; 96.8 0.00086 2.9E-08 59.2 3.9 62 109-175 53-114 (464)
218 2l08_A Regulator of nonsense t 96.7 0.0023 8E-08 44.1 4.8 66 109-174 9-78 (97)
219 2kn4_A Immunoglobulin G-bindin 95.8 0.0071 2.4E-07 45.0 3.9 34 138-172 2-36 (158)
220 2i2y_A Fusion protein consists 95.7 0.0026 8.9E-08 47.1 0.8 40 147-187 10-51 (150)
221 3d45_A Poly(A)-specific ribonu 88.5 1.4 4.9E-05 39.1 7.9 54 109-170 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 85.8 1.8 6.1E-05 27.7 5.3 67 111-185 2-75 (76)
223 4f25_A Polyadenylate-binding p 78.6 0.59 2E-05 32.5 0.8 19 107-125 95-113 (115)
224 4e8u_A Putative uncharacterize 76.2 12 0.0004 28.3 7.4 59 110-170 13-83 (172)
225 3swz_A Steroid 17-alpha-hydrox 49.8 29 0.001 29.5 6.0 59 111-177 16-78 (494)
226 3fut_A Dimethyladenosine trans 46.6 25 0.00085 28.3 4.7 33 109-142 110-142 (271)
227 3uzu_A Ribosomal RNA small sub 42.5 13 0.00043 30.1 2.3 33 110-142 115-147 (279)
228 3tbg_A Cytochrome P450 2D6; mo 40.7 17 0.00058 30.8 3.0 57 113-177 20-79 (479)
229 3pgw_S U1-70K; protein-RNA com 40.6 3 0.0001 36.3 -1.8 15 126-140 9-23 (437)
230 4eyt_A Telomerase associated p 40.6 79 0.0027 21.0 9.5 69 108-183 11-87 (129)
231 2yko_A LINE-1 ORF1P; RNA-bindi 38.8 1.4E+02 0.0048 23.4 8.0 76 108-184 51-149 (233)
232 4bby_A Alkyldihydroxyacetoneph 34.1 26 0.00088 32.0 3.2 52 116-167 350-405 (658)
233 1qyr_A KSGA, high level kasuga 33.6 34 0.0012 27.0 3.5 32 110-141 91-122 (252)
234 3ftd_A Dimethyladenosine trans 32.3 35 0.0012 26.8 3.4 33 110-142 96-128 (249)
235 3tqs_A Ribosomal RNA small sub 31.1 18 0.0006 28.8 1.4 32 111-142 98-129 (255)
236 1i4w_A Mitochondrial replicati 29.3 44 0.0015 28.0 3.6 23 110-132 143-165 (353)
237 3e6i_A CYPIIE1, P450-J, cytoch 28.4 52 0.0018 27.7 4.1 52 113-172 20-74 (476)
238 1igq_A Transcriptional repress 27.8 56 0.0019 20.1 2.9 23 137-159 20-42 (62)
239 3ts2_A Protein LIN-28 homolog 25.5 9.9 0.00034 27.8 -0.9 27 125-158 3-29 (148)
240 3h7h_B Transcription elongatio 25.3 82 0.0028 21.4 3.8 35 135-173 40-75 (106)
241 1xn9_A 30S ribosomal protein S 24.4 1.2E+02 0.004 20.6 4.4 48 119-167 28-81 (101)
242 3pm0_A Cypib1, cytochrome P450 24.4 1E+02 0.0035 26.1 5.2 55 112-174 18-74 (507)
243 2v94_A RPS24, 30S ribosomal pr 23.1 1.6E+02 0.0055 20.1 4.9 47 119-166 37-89 (107)
244 1ywx_A 30S ribosomal protein S 22.5 1.4E+02 0.0047 20.2 4.5 46 119-165 28-79 (102)
245 2exu_A Transcription initiatio 21.0 2.4E+02 0.0084 21.5 6.2 37 135-175 138-175 (200)
246 3j21_T 50S ribosomal protein L 20.7 1.8E+02 0.0063 18.9 6.3 52 112-165 25-78 (86)
247 2i9x_A Putative septation prot 20.3 1.3E+02 0.0045 19.7 3.9 45 135-185 5-52 (87)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=9.4e-24 Score=150.25 Aligned_cols=79 Identities=27% Similarity=0.485 Sum_probs=76.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
.+++|||+|||+.+|+++|+.+|++||.|.+|+|++++ +|+++|||||+|.+.++|.+|| .|||..|+|++|+|.+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46789999999999999999999999999999999998 8999999999999999999999 899999999999999997
Q ss_pred C
Q 027515 186 T 186 (222)
Q Consensus 186 ~ 186 (222)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 2
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.90 E-value=3.5e-23 Score=158.76 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=80.6
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||++.|+|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999998 7999999999999999999999 8999999999999999
Q ss_pred ccCCCCCCC
Q 027515 184 KRTNIPGMK 192 (222)
Q Consensus 184 a~~~~~~~~ 192 (222)
+++..+...
T Consensus 116 a~~~~~~~~ 124 (156)
T 1h2v_Z 116 DAGFKEGRQ 124 (156)
T ss_dssp ESCCCTTCC
T ss_pred CCCCCCcCC
Confidence 987665443
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=145.49 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=74.9
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCC-CeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-Hc-CCceeCCeeeEEeec
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LL-NETELHGRQLKVSAK 184 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l-~g~~l~gr~i~v~~a 184 (222)
+++|||+|||+.+|+++|+.+|++|| .|.+|+|++++ +++++|||||+|.+.++|.+|| .+ ++..|+||+|+|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999998 8999999999999999999999 66 567899999999999
Q ss_pred cCCCC
Q 027515 185 RTNIP 189 (222)
Q Consensus 185 ~~~~~ 189 (222)
++++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87653
No 4
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=1.2e-21 Score=142.54 Aligned_cols=86 Identities=23% Similarity=0.472 Sum_probs=80.3
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||++.|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344568899999999999999999999999999999999997 8999999999999999999999 89999999999999
Q ss_pred eeccCCCC
Q 027515 182 SAKRTNIP 189 (222)
Q Consensus 182 ~~a~~~~~ 189 (222)
.+++.+.+
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=3.9e-22 Score=144.55 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=76.9
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
.+.++|||+|||+.+|+++|+.+|++||.|.+|+|+.++ |++++|||||+|.+.++|.+|| .|||+.|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 347899999999999999999999999999999999998 7999999999999999999999 89999999999999999
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
+..
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 6
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=8.5e-22 Score=148.04 Aligned_cols=86 Identities=23% Similarity=0.378 Sum_probs=80.0
Q ss_pred cccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 103 ~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
.......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3445567899999999999999999999999999999999998 7999999999999999999999 8999999999999
Q ss_pred EeeccCCC
Q 027515 181 VSAKRTNI 188 (222)
Q Consensus 181 v~~a~~~~ 188 (222)
|.+++++.
T Consensus 116 v~~a~~~~ 123 (139)
T 1u6f_A 116 VALAASGH 123 (139)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998765
No 7
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=8e-22 Score=144.12 Aligned_cols=82 Identities=21% Similarity=0.467 Sum_probs=77.9
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|.|+.+++++++|||||+|.+.++|.+|| .|||..|+|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4468999999999999999999999999999999999989999999999999999999999 899999999999999998
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
.+.
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 655
No 8
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.6e-21 Score=142.22 Aligned_cols=85 Identities=21% Similarity=0.454 Sum_probs=78.3
Q ss_pred cccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 103 ~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
.......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .+++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3445678999999999999999999999999999999999998 7999999999999999999999 8888 89999999
Q ss_pred EeeccCCC
Q 027515 181 VSAKRTNI 188 (222)
Q Consensus 181 v~~a~~~~ 188 (222)
|.+++...
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997654
No 9
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=2.2e-22 Score=148.78 Aligned_cols=85 Identities=25% Similarity=0.416 Sum_probs=79.4
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557899999999999999999999999999999999998 8999999999999999999999 899999999999999
Q ss_pred eccCCCC
Q 027515 183 AKRTNIP 189 (222)
Q Consensus 183 ~a~~~~~ 189 (222)
+++++.+
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9987654
No 10
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.88 E-value=3.5e-22 Score=154.72 Aligned_cols=85 Identities=24% Similarity=0.402 Sum_probs=78.5
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.....++|||+|||+.+|+.+|+.+|++||.|..|.|+.++ +|+++|||||+|.+.++|.+|| .|||+.|+|+.|+|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999997 8999999999999999999999 899999999999999
Q ss_pred eccCCCC
Q 027515 183 AKRTNIP 189 (222)
Q Consensus 183 ~a~~~~~ 189 (222)
+++++.+
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9987664
No 11
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=1.2e-21 Score=142.69 Aligned_cols=86 Identities=22% Similarity=0.349 Sum_probs=80.1
Q ss_pred cccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 103 ~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
.......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3344567899999999999999999999999999999999998 8999999999999999999999 9999999999999
Q ss_pred EeeccCCC
Q 027515 181 VSAKRTNI 188 (222)
Q Consensus 181 v~~a~~~~ 188 (222)
|.+++++.
T Consensus 99 V~~a~~~~ 106 (115)
T 2cpz_A 99 VQLKRSKN 106 (115)
T ss_dssp EECCCCSC
T ss_pred EEEcCCCC
Confidence 99998765
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8e-22 Score=141.16 Aligned_cols=86 Identities=22% Similarity=0.454 Sum_probs=80.0
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 334567899999999999999999999999999999999998 8999999999999999999999 89999999999999
Q ss_pred eeccCCCC
Q 027515 182 SAKRTNIP 189 (222)
Q Consensus 182 ~~a~~~~~ 189 (222)
.+++++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987653
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=140.23 Aligned_cols=85 Identities=24% Similarity=0.387 Sum_probs=79.8
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||++.|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 344568899999999999999999999999999999999997 8999999999999999999999 89999999999999
Q ss_pred eeccCCC
Q 027515 182 SAKRTNI 188 (222)
Q Consensus 182 ~~a~~~~ 188 (222)
.+++++.
T Consensus 90 ~~a~~~~ 96 (103)
T 2cq0_A 90 EWAKPST 96 (103)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998765
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=138.03 Aligned_cols=83 Identities=25% Similarity=0.579 Sum_probs=78.2
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||++.|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 347899999999999999999999999999999999998 7999999999999999999999 79999999999999999
Q ss_pred cCCCC
Q 027515 185 RTNIP 189 (222)
Q Consensus 185 ~~~~~ 189 (222)
+.+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87653
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=138.89 Aligned_cols=85 Identities=22% Similarity=0.536 Sum_probs=79.8
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.+++++++|||||+|.+.++|.+|| .||+..|+|+.|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred eccCCC
Q 027515 183 AKRTNI 188 (222)
Q Consensus 183 ~a~~~~ 188 (222)
+++++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998765
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=138.59 Aligned_cols=82 Identities=23% Similarity=0.520 Sum_probs=78.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+||.|++..|+|+.|+|.+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457899999999999999999999999999999999997 7999999999999999999999999999999999999998
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
++.
T Consensus 88 ~~~ 90 (99)
T 2dgs_A 88 PRD 90 (99)
T ss_dssp CCC
T ss_pred CCc
Confidence 765
No 17
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=142.87 Aligned_cols=80 Identities=19% Similarity=0.379 Sum_probs=74.1
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCC--eeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCc----eeCCee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGT--VNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNET----ELHGRQ 178 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~--i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~----~l~gr~ 178 (222)
..-.||||+|||+.+|+++|+.+|++||. |.+|+|++++ +|+++|||||+|.+.++|.+|| .||+. .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34678999999999999999999999995 6799999998 8999999999999999999999 89886 699999
Q ss_pred eEEeeccC
Q 027515 179 LKVSAKRT 186 (222)
Q Consensus 179 i~v~~a~~ 186 (222)
|+|.+|++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999985
No 18
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=1.7e-21 Score=139.43 Aligned_cols=84 Identities=26% Similarity=0.389 Sum_probs=79.0
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCC---eeeEE
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHG---RQLKV 181 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~g---r~i~v 181 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.+++++++|||||+|.+.++|.+|| .||+..|.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 35588999999999999999999999999999999999999999999999999999999999 899999998 99999
Q ss_pred eeccCCCC
Q 027515 182 SAKRTNIP 189 (222)
Q Consensus 182 ~~a~~~~~ 189 (222)
.+++++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987653
No 19
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-21 Score=140.36 Aligned_cols=86 Identities=22% Similarity=0.479 Sum_probs=79.8
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeC-C-CCCcccEEEEEEcCHHHHHHHH-Hc-CCceeCCeee
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-K-FGQPKGFAYVEFVEIDAVQNAL-LL-NETELHGRQL 179 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~-t~~~kg~afV~f~~~~~a~~al-~l-~g~~l~gr~i 179 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.+ + +++++|||||+|.+.++|.+|| .| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456789999999999999999999999999999999998 5 8999999999999999999999 89 9999999999
Q ss_pred EEeeccCCCC
Q 027515 180 KVSAKRTNIP 189 (222)
Q Consensus 180 ~v~~a~~~~~ 189 (222)
+|.+++++..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987653
No 20
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=139.24 Aligned_cols=84 Identities=21% Similarity=0.383 Sum_probs=78.7
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.+ ++.++|||||+|.+.++|.+|| .||+..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456889999999999999999999999999999999998 8999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 027515 184 KRTNIP 189 (222)
Q Consensus 184 a~~~~~ 189 (222)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987653
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=135.62 Aligned_cols=80 Identities=21% Similarity=0.427 Sum_probs=75.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
..++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||.|.+.++|.+|+ .||+..|+|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46799999999999999999999999999999999997 8999999999999999999999 899999999999999998
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=137.91 Aligned_cols=83 Identities=24% Similarity=0.445 Sum_probs=78.8
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999998 8999999999999999999999 99999999999999999
Q ss_pred cCCCC
Q 027515 185 RTNIP 189 (222)
Q Consensus 185 ~~~~~ 189 (222)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 87653
No 23
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.87 E-value=1.1e-21 Score=136.10 Aligned_cols=83 Identities=61% Similarity=1.047 Sum_probs=78.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
..++|||+|||+.+|+++|+.+|++||.|..|+++.++ +++++|||||+|.+.++|.+|+.||+..|+|+.|+|.++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 36799999999999999999999999999999999998 89999999999999999999999999999999999999988
Q ss_pred CCCC
Q 027515 187 NIPG 190 (222)
Q Consensus 187 ~~~~ 190 (222)
+.++
T Consensus 85 ~~pg 88 (89)
T 3ucg_A 85 NRPG 88 (89)
T ss_dssp TSCC
T ss_pred CCCC
Confidence 7654
No 24
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.3e-21 Score=138.86 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=78.1
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.+++++++|||||+|.+.++|.+|| .||++.|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34578999999999999999999999999999999999989999999999999999999999 79999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+...
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7654
No 25
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=7.4e-22 Score=140.93 Aligned_cols=84 Identities=29% Similarity=0.489 Sum_probs=78.7
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999999998 7999999999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 027515 184 KRTNIP 189 (222)
Q Consensus 184 a~~~~~ 189 (222)
++...+
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987653
No 26
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=1.6e-21 Score=133.64 Aligned_cols=80 Identities=21% Similarity=0.434 Sum_probs=76.0
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
+.+|||+|||+.+|+++|+.+|++||.|..|+++.++ +++++|||||.|.+.++|.+|+ .|||..|+|+.|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999997 8999999999999999999999 8999999999999999987
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 27
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-21 Score=140.49 Aligned_cols=84 Identities=24% Similarity=0.438 Sum_probs=78.9
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcC------CceeCC
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLN------ETELHG 176 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~------g~~l~g 176 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .|| +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999998 7999999999999999999999 899 999999
Q ss_pred eeeEEeeccCCC
Q 027515 177 RQLKVSAKRTNI 188 (222)
Q Consensus 177 r~i~v~~a~~~~ 188 (222)
+.|+|.+++++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998765
No 28
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=3.1e-21 Score=137.78 Aligned_cols=82 Identities=28% Similarity=0.492 Sum_probs=77.3
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++|| |..|+|+.++ +++++|||||+|.+.++|.+||.||+..|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34578999999999999999999999997 9999999998 799999999999999999999999999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 29
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2e-21 Score=139.02 Aligned_cols=82 Identities=26% Similarity=0.500 Sum_probs=77.3
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-C-CCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-F-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t-~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++|| |..|+|+.++ + ++++|||||+|.+.++|.+||.||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4568999999999999999999999999 9999999998 6 89999999999999999999999999999999999999
Q ss_pred cCCCC
Q 027515 185 RTNIP 189 (222)
Q Consensus 185 ~~~~~ 189 (222)
+++..
T Consensus 92 ~~~~~ 96 (104)
T 1wi8_A 92 DQAQD 96 (104)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87653
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=137.97 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=77.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEE-EEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV-TILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
..++|||+|||+.+|+++|+.+|++||.|..| +|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 47899999999999999999999999999999 999996 8999999999999999999999 79999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8765
No 31
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=139.58 Aligned_cols=82 Identities=27% Similarity=0.471 Sum_probs=78.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 457899999999999999999999999999999999997 7999999999999999999999 89999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-21 Score=140.28 Aligned_cols=84 Identities=25% Similarity=0.420 Sum_probs=78.9
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .|||..|+|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 4557899999999999999999999999999999999998 7999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 027515 184 KRTNIP 189 (222)
Q Consensus 184 a~~~~~ 189 (222)
++++.+
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 33
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=139.11 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=77.7
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhh-CCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCce-eCCeeeEEee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQS-CGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETE-LHGRQLKVSA 183 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~-l~gr~i~v~~ 183 (222)
...++|||+|||+.+|+++|+.+|++ ||.|..|+|+.+++++++|||||+|.+.++|.+|| .|++.. |+|+.|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45789999999999999999999999 99999999999999999999999999999999999 899999 9999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++++.
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97665
No 34
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=1.5e-21 Score=139.98 Aligned_cols=84 Identities=20% Similarity=0.448 Sum_probs=78.5
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCcee---CCeee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETEL---HGRQL 179 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l---~gr~i 179 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34567899999999999999999999999999999999998 7999999999999999999999 8999988 89999
Q ss_pred EEeeccCCC
Q 027515 180 KVSAKRTNI 188 (222)
Q Consensus 180 ~v~~a~~~~ 188 (222)
+|.+++++.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998765
No 35
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-21 Score=138.89 Aligned_cols=83 Identities=24% Similarity=0.572 Sum_probs=78.4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999987 7999999999999999999999 99999999999999999
Q ss_pred cCCCC
Q 027515 185 RTNIP 189 (222)
Q Consensus 185 ~~~~~ 189 (222)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87653
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.5e-21 Score=135.98 Aligned_cols=81 Identities=26% Similarity=0.420 Sum_probs=76.7
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3557899999999999999999999999999999999998 7999999999999999999999 8999999999999999
Q ss_pred ccC
Q 027515 184 KRT 186 (222)
Q Consensus 184 a~~ 186 (222)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 37
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.86 E-value=2.7e-22 Score=163.38 Aligned_cols=79 Identities=27% Similarity=0.476 Sum_probs=74.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCC--CeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCG--TVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
..++|||+|||+.+|+++|+.+|++|| .|..|+|++++ +++++|||||+|.+.++|.+|| .||++.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999998 8999999999999999999999 8999999999999998
Q ss_pred ccC
Q 027515 184 KRT 186 (222)
Q Consensus 184 a~~ 186 (222)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 38
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.5e-21 Score=140.47 Aligned_cols=86 Identities=31% Similarity=0.582 Sum_probs=79.6
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCee--------EEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCce
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVN--------RVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETE 173 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~ 173 (222)
......++|||+|||+.+|+++|+.+|++||.|. .|+|+.++ +++++|||||+|.+.++|.+|| .||++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3445688999999999999999999999999999 69999996 8999999999999999999999 899999
Q ss_pred eCCeeeEEeeccCCCC
Q 027515 174 LHGRQLKVSAKRTNIP 189 (222)
Q Consensus 174 l~gr~i~v~~a~~~~~ 189 (222)
|+|+.|+|.+++.+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987653
No 39
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=140.84 Aligned_cols=84 Identities=18% Similarity=0.439 Sum_probs=78.0
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+||.++++.|+|+.|+|.+
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 34456899999999999999999999999999999999997 79999999999999999999995599999999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++++.
T Consensus 103 a~~~~ 107 (116)
T 1x4b_A 103 AVARE 107 (116)
T ss_dssp CSSCC
T ss_pred CCCCc
Confidence 98765
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.9e-21 Score=141.90 Aligned_cols=79 Identities=22% Similarity=0.421 Sum_probs=74.0
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTN 187 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~ 187 (222)
..+|||+|||+.+|+++|+.+|++||.|.+|+|+.++ +.++|||||.|.+.++|.+|| .|+++.|+|+.|+|.+++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 5689999999999999999999999999999999886 348999999999999999999 89999999999999999875
Q ss_pred C
Q 027515 188 I 188 (222)
Q Consensus 188 ~ 188 (222)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 5
No 41
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=136.44 Aligned_cols=82 Identities=34% Similarity=0.586 Sum_probs=77.2
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.+++++++|||||+|.+.++|.+|| .||+..|+|+.|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999 7999999999999999
Q ss_pred ccC
Q 027515 184 KRT 186 (222)
Q Consensus 184 a~~ 186 (222)
+++
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 42
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=135.43 Aligned_cols=81 Identities=31% Similarity=0.528 Sum_probs=76.4
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 7999999999999999999999 899999999999999
Q ss_pred ecc
Q 027515 183 AKR 185 (222)
Q Consensus 183 ~a~ 185 (222)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 43
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.5e-21 Score=135.38 Aligned_cols=84 Identities=23% Similarity=0.445 Sum_probs=77.3
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.++.+ ++|||||+|.+.++|.+|| .||++.|+|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33456789999999999999999999999999999999988744 8999999999999999999 899999999999999
Q ss_pred eccCCC
Q 027515 183 AKRTNI 188 (222)
Q Consensus 183 ~a~~~~ 188 (222)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 998765
No 44
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.2e-21 Score=135.76 Aligned_cols=83 Identities=25% Similarity=0.433 Sum_probs=76.3
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++.+ ++|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999999999999999999988633 6899999999999999999 7999999999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++++.
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98755
No 45
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=3.2e-21 Score=133.35 Aligned_cols=79 Identities=25% Similarity=0.503 Sum_probs=74.8
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+||.+++..|+|+.|+|.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4567899999999999999999999999999999999998 799999999999999999999977999999999999876
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=2.3e-21 Score=139.96 Aligned_cols=85 Identities=24% Similarity=0.402 Sum_probs=79.4
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .|||..|+|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999997 8999999999999999999999 899999999999999
Q ss_pred eccCCCC
Q 027515 183 AKRTNIP 189 (222)
Q Consensus 183 ~a~~~~~ 189 (222)
+++++.+
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987653
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=1.9e-21 Score=133.80 Aligned_cols=79 Identities=28% Similarity=0.508 Sum_probs=75.5
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+ .|||..|+|++|+|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999986 8999999999999999999999 99999999999999998
Q ss_pred c
Q 027515 185 R 185 (222)
Q Consensus 185 ~ 185 (222)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 48
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=140.56 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=75.9
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
...++|||+|||+.+|+++|+.+|++||.|.+|+|++++.++++|||||+|.+.++|.+||.++++.|+|+.|+|.++..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 45789999999999999999999999999999999998889999999999999999999999899999999999998754
No 49
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.4e-21 Score=135.43 Aligned_cols=86 Identities=19% Similarity=0.354 Sum_probs=78.2
Q ss_pred cccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEE
Q 027515 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKV 181 (222)
Q Consensus 103 ~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v 181 (222)
.......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+||. +++.|+|+.|+|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEE
Confidence 3444567899999999999999999999999999999999997 79999999999999999999996 478999999999
Q ss_pred eeccCCCC
Q 027515 182 SAKRTNIP 189 (222)
Q Consensus 182 ~~a~~~~~ 189 (222)
.+++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987653
No 50
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.86 E-value=1e-20 Score=167.32 Aligned_cols=82 Identities=22% Similarity=0.548 Sum_probs=77.9
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+.+|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|| .|||+.|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999997 8999999999999999999999 99999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8754
No 51
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=4.5e-22 Score=138.85 Aligned_cols=80 Identities=26% Similarity=0.448 Sum_probs=70.9
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCC--CeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCG--TVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
.+|||+|||+.+|+++|+.+|++|| .|.+|+|+.++ +|+++|||||+|.+.++|.+|| .|||..|+||.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998 8999999999999999999999 899999999999999998
Q ss_pred CCCC
Q 027515 186 TNIP 189 (222)
Q Consensus 186 ~~~~ 189 (222)
+.++
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 52
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=139.87 Aligned_cols=86 Identities=26% Similarity=0.548 Sum_probs=79.7
Q ss_pred cccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 103 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 103 ~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
.......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||.|.+.++|.+|| .|+|..|+|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445567899999999999999999999999999999999997 7999999999999999999999 8999999999999
Q ss_pred EeeccCCC
Q 027515 181 VSAKRTNI 188 (222)
Q Consensus 181 v~~a~~~~ 188 (222)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998753
No 53
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=3.5e-21 Score=135.77 Aligned_cols=80 Identities=29% Similarity=0.517 Sum_probs=76.7
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
+++|||+|||+.+++++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+ .|||..|+|+.|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999997 7999999999999999999999 8999999999999999987
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 54
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=8e-22 Score=147.04 Aligned_cols=85 Identities=18% Similarity=0.354 Sum_probs=78.4
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeE--EEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCc----eeC
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNR--VTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNET----ELH 175 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~--v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~----~l~ 175 (222)
......++|||+|||+.+|+++|+.+|++||.|.. |+|++++ +|+++|||||+|.+. +|.+|| .||+. .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999976 9999999 899999999999999 999999 99999 999
Q ss_pred CeeeEEeeccCCCC
Q 027515 176 GRQLKVSAKRTNIP 189 (222)
Q Consensus 176 gr~i~v~~a~~~~~ 189 (222)
||.|+|.+++++.+
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987653
No 55
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.86 E-value=2.8e-21 Score=142.48 Aligned_cols=86 Identities=55% Similarity=1.020 Sum_probs=79.8
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+||.||+..|+|+.|+|.+
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 33457899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 027515 184 KRTNIPG 190 (222)
Q Consensus 184 a~~~~~~ 190 (222)
+++..++
T Consensus 112 a~~~~~~ 118 (124)
T 2jwn_A 112 KRTNMPG 118 (124)
T ss_dssp SSCCCSS
T ss_pred CCCCCCC
Confidence 9876643
No 56
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.4e-21 Score=137.95 Aligned_cols=84 Identities=25% Similarity=0.446 Sum_probs=78.2
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+||..+++.|+|+.|+|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 44567899999999999999999999999999999999997 89999999999999999999994499999999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98765
No 57
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.4e-21 Score=137.69 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=75.6
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
....++|||+|||+.+|+++|+.+|++||. ..|+|+.+++++++|||||+|.+.++|.+||.+|+..|+||.|+|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 345789999999999999999999999994 5999999999999999999999999999999889999999999999987
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 58
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=135.91 Aligned_cols=80 Identities=28% Similarity=0.439 Sum_probs=75.9
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeE--------EEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeC
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNR--------VTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELH 175 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~ 175 (222)
....++|||+|||+.+|+++|+.+|++||.|.. |+|+.++ +++++|||||+|.+.++|.+|| .|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 355789999999999999999999999999999 9999997 8999999999999999999999 89999999
Q ss_pred CeeeEEeecc
Q 027515 176 GRQLKVSAKR 185 (222)
Q Consensus 176 gr~i~v~~a~ 185 (222)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 59
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=5.5e-21 Score=138.10 Aligned_cols=87 Identities=17% Similarity=0.387 Sum_probs=74.6
Q ss_pred ccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeE
Q 027515 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLK 180 (222)
Q Consensus 102 ~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~ 180 (222)
........++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +|+++|||||+|.+.++|.+||...+..|+|+.|+
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~ 97 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 97 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE
Confidence 33444567899999999999999999999999999999999998 79999999999999999999995456999999999
Q ss_pred EeeccCCC
Q 027515 181 VSAKRTNI 188 (222)
Q Consensus 181 v~~a~~~~ 188 (222)
|.++.++.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998765
No 60
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.1e-22 Score=144.22 Aligned_cols=83 Identities=24% Similarity=0.286 Sum_probs=77.1
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCe-eEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTV-NRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++||.| ..|+|+.+++++++|||||+|.+.++|.+||.+|++.|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 4557899999999999999999999999999 899999999999999999999999999999966999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
..+.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7643
No 61
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.85 E-value=1.4e-20 Score=134.32 Aligned_cols=78 Identities=23% Similarity=0.429 Sum_probs=71.7
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+ +|||||+|.+.++|.+|| .||+..|.|+.|+|.+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 356899999999999999999999999999999986 679999999999999999 899999999999999998
Q ss_pred CCCCCC
Q 027515 186 TNIPGM 191 (222)
Q Consensus 186 ~~~~~~ 191 (222)
++....
T Consensus 82 ~~~~~~ 87 (103)
T 2dgu_A 82 PPDQKR 87 (103)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 765433
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=5.7e-21 Score=139.59 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=75.9
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|++|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999997 7999999999999999999999 899999999999999
Q ss_pred ecc
Q 027515 183 AKR 185 (222)
Q Consensus 183 ~a~ 185 (222)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 63
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.6e-21 Score=134.10 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=75.8
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC----CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK----FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~----t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 346899999999999999999999999999999999875 3389999999999999999999 89999999999999
Q ss_pred eeccCCC
Q 027515 182 SAKRTNI 188 (222)
Q Consensus 182 ~~a~~~~ 188 (222)
.+++++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998765
No 64
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=7.7e-22 Score=140.44 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=76.1
Q ss_pred CCcEEEEeccCC------CCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCC-ee
Q 027515 108 DSRSIYVGNVDY------ACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHG-RQ 178 (222)
Q Consensus 108 ~~~~vfV~nLp~------~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~g-r~ 178 (222)
..++|||+|||+ .+++++|+.+|++||.|.+|+|++++ ||+++|||||+|.+.++|.+|| .|||..|.| |.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999998 7999999999999999999999 899999999 99
Q ss_pred eEEeeccCC
Q 027515 179 LKVSAKRTN 187 (222)
Q Consensus 179 i~v~~a~~~ 187 (222)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999753
No 65
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=134.68 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=73.4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCC-----eeeE
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHG-----RQLK 180 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~g-----r~i~ 180 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.+ |||||+|.+.++|.+|| .||++.|.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 45789999999999999999999999999999999864 99999999999999999 899999999 9999
Q ss_pred EeeccCCCCCCC
Q 027515 181 VSAKRTNIPGMK 192 (222)
Q Consensus 181 v~~a~~~~~~~~ 192 (222)
|.+++++.+...
T Consensus 87 V~~a~~~~~~~~ 98 (108)
T 1x4c_A 87 VKVDGPRSPSYG 98 (108)
T ss_dssp EEESSCCSCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999988664433
No 66
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.7e-20 Score=134.21 Aligned_cols=83 Identities=20% Similarity=0.343 Sum_probs=75.4
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+. +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3445678999999999999999999999999999999854 4568999999999999999999 999999999999999
Q ss_pred eccCCC
Q 027515 183 AKRTNI 188 (222)
Q Consensus 183 ~a~~~~ 188 (222)
+++++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998755
No 67
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=135.08 Aligned_cols=82 Identities=21% Similarity=0.427 Sum_probs=77.4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCee-EEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCee----e
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVN-RVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQ----L 179 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~-~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~----i 179 (222)
...++|||+|||+.+|+++|+.+|++||.|. .|+|+.++ +++++|||||+|.+.++|.+|| .||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 99999998 8999999999999999999999 79999999999 9
Q ss_pred EEeeccCCC
Q 027515 180 KVSAKRTNI 188 (222)
Q Consensus 180 ~v~~a~~~~ 188 (222)
+|.++++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997654
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=132.52 Aligned_cols=82 Identities=21% Similarity=0.478 Sum_probs=75.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCC-cccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQ-PKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~-~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
..++|||+|||+.+|+++|+.+|++||.|..|+|+.++ ++. ++|||||+|.+.++|.+|+ .|||..|+|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999999887 444 9999999999999999999 79999999999999999
Q ss_pred cCCCC
Q 027515 185 RTNIP 189 (222)
Q Consensus 185 ~~~~~ 189 (222)
++..+
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76553
No 69
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-21 Score=142.79 Aligned_cols=85 Identities=32% Similarity=0.525 Sum_probs=78.7
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEe
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS 182 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~ 182 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+||.||++.|+|+.|+|.
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ 99 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEE
Confidence 344567899999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred eccCCC
Q 027515 183 AKRTNI 188 (222)
Q Consensus 183 ~a~~~~ 188 (222)
+++++.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 997643
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=9.3e-21 Score=132.31 Aligned_cols=82 Identities=26% Similarity=0.445 Sum_probs=76.4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.+ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45789999999999999999999999999999999874 7899999999999999999999 899999999999999998
Q ss_pred CCCC
Q 027515 186 TNIP 189 (222)
Q Consensus 186 ~~~~ 189 (222)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 71
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=4.8e-21 Score=142.62 Aligned_cols=85 Identities=26% Similarity=0.408 Sum_probs=79.6
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .|++..|+|++|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 7999999999999999999999 899999999999999
Q ss_pred eccCCCC
Q 027515 183 AKRTNIP 189 (222)
Q Consensus 183 ~a~~~~~ 189 (222)
+++++++
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9987664
No 72
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5.9e-21 Score=134.95 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=76.5
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
....++|||+|||+.+|+++|+.+|++||.|..+.++.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456899999999999999999999999999988888877 8999999999999999999999 9999999999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++.+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87543
No 73
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.84 E-value=1.8e-21 Score=142.61 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=76.9
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCC---eeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEe
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGT---VNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS 182 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~ 182 (222)
....++|||+|||+.+|+++|+.+|++||. |..|+|+.++.|+++|||||+|.+.++|.+||.+|++.|+||.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 456789999999999999999999999998 89999999988999999999999999999999999999999999999
Q ss_pred eccCC
Q 027515 183 AKRTN 187 (222)
Q Consensus 183 ~a~~~ 187 (222)
++..+
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 74
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=1.4e-20 Score=135.12 Aligned_cols=79 Identities=23% Similarity=0.407 Sum_probs=75.9
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.+++++++|||||+|.+.++|.+|| .||+..|+|+.|+|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4578999999999999999999999999999999999999999999999999999999999 899999999999999985
No 75
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=135.51 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=76.1
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCC-eeEEEEe-eCC-CCCcccEEEEEEcCHHHHHHHH-HcC--CceeCCeeeE
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGT-VNRVTIL-TDK-FGQPKGFAYVEFVEIDAVQNAL-LLN--ETELHGRQLK 180 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~-i~~v~i~-~~~-t~~~kg~afV~f~~~~~a~~al-~l~--g~~l~gr~i~ 180 (222)
...++|||+|||+.+|+++|+.+|++||. |..|.|+ .++ +++++|||||+|.+.++|.+|| .|+ ++.|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 666 7899999999999999999999 896 5999999999
Q ss_pred EeeccCCCC
Q 027515 181 VSAKRTNIP 189 (222)
Q Consensus 181 v~~a~~~~~ 189 (222)
|.+++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987653
No 76
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=130.12 Aligned_cols=81 Identities=17% Similarity=0.359 Sum_probs=77.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
...++|||+|||+.+|+++|+.+|++| .|..|+|+.+.+|+++|||||+|.+.++|.+||.||+..|+|+.|+|.++++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 457899999999999999999999999 9999999999889999999999999999999999999999999999999987
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
++
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 77
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=138.40 Aligned_cols=86 Identities=26% Similarity=0.485 Sum_probs=74.7
Q ss_pred ccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC--CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeee
Q 027515 102 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK--FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQL 179 (222)
Q Consensus 102 ~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~--t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i 179 (222)
........++|||+|||+.+|+++|+.+|++|| |..|+|+.++ +|+++|||||+|.+.++|.+||.|+|..|+|+.|
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l 90 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRI 90 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEE
Confidence 334456689999999999999999999999999 9999999986 7999999999999999999999999999999999
Q ss_pred EEeeccCCC
Q 027515 180 KVSAKRTNI 188 (222)
Q Consensus 180 ~v~~a~~~~ 188 (222)
+|.+++++.
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998654
No 78
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=135.87 Aligned_cols=84 Identities=24% Similarity=0.398 Sum_probs=76.7
Q ss_pred cccCCcEEEEeccCCCCCHHHHH---HHhhhCCCeeEEEEeeCC-CC---CcccEEEEEEcCHHHHHHHH-HcCCceeCC
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQ---QHFQSCGTVNRVTILTDK-FG---QPKGFAYVEFVEIDAVQNAL-LLNETELHG 176 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~~~-t~---~~kg~afV~f~~~~~a~~al-~l~g~~l~g 176 (222)
.....++|||+|||+.+++++|+ .+|++||.|..|+|+.++ ++ +++|||||+|.+.++|.+|| .||++.|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34557899999999999999999 999999999999999887 43 56799999999999999999 899999999
Q ss_pred eeeEEeeccCCC
Q 027515 177 RQLKVSAKRTNI 188 (222)
Q Consensus 177 r~i~v~~a~~~~ 188 (222)
++|+|.+|+++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 79
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=133.57 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=75.1
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeE-EEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNR-VTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|.. |+|+.+.+++++|||||+|.+.++|.+||..++..|+||.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 45789999999999999999999999999987 88988888999999999999999999999559999999999999986
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
.+
T Consensus 93 ~~ 94 (104)
T 1wg5_A 93 RA 94 (104)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 80
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.9e-21 Score=136.75 Aligned_cols=82 Identities=30% Similarity=0.611 Sum_probs=77.6
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .|||..|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 346899999999999999999999999999999999997 8999999999999999999999 89999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8764
No 81
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=132.15 Aligned_cols=81 Identities=23% Similarity=0.496 Sum_probs=73.9
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|||+.+|+++|+.+|++||.| +++.+.+++++|||||+|.+.++|.+|| .||+..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34568899999999999999999999999987 5666678999999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98764
No 82
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=131.47 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=74.1
Q ss_pred cCCcEEEEeccCCCCCHHHHH----HHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 107 VDSRSIYVGNVDYACTPEEVQ----QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
...++|||+|||+.+|+++|+ .+|++||.|.+|+|+.++.+ +|||||+|.+.++|.+|| .|||..|+|++|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 346789999999999999999 99999999999999988744 899999999999999999 89999999999999
Q ss_pred eeccCCC
Q 027515 182 SAKRTNI 188 (222)
Q Consensus 182 ~~a~~~~ 188 (222)
.+++++.
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997654
No 83
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=136.35 Aligned_cols=87 Identities=21% Similarity=0.389 Sum_probs=77.6
Q ss_pred CcccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCee
Q 027515 100 TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQ 178 (222)
Q Consensus 100 ~~~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~ 178 (222)
+.........++|||+|||+.+|+++|+.+|++||.|..|+|+.++. .++|||||+|.+.++|.+|+ .|||..|+|+.
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 33444556788999999999999999999999999999999998764 48999999999999999999 89999999999
Q ss_pred eEEeeccCC
Q 027515 179 LKVSAKRTN 187 (222)
Q Consensus 179 i~v~~a~~~ 187 (222)
|+|.+++++
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999865
No 84
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=135.78 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=74.8
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
...++|||+|||+.+|+++|+.+|++| .|..|+|+.+++|+++|||||+|.+.++|.+||.+|+..|+||.|.|..+..
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 345799999999999999999999999 8999999999889999999999999999999999999999999999988864
Q ss_pred C
Q 027515 187 N 187 (222)
Q Consensus 187 ~ 187 (222)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 85
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=143.34 Aligned_cols=79 Identities=27% Similarity=0.430 Sum_probs=74.7
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCC--CeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCG--TVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
..++|||+|||+.+|+++|+.+|++|| .|..|+|+.++ +|+++|||||+|.+.++|.+|| .|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999998 8999999999999999999999 8999999999999999
Q ss_pred ccC
Q 027515 184 KRT 186 (222)
Q Consensus 184 a~~ 186 (222)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 865
No 86
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=6.1e-21 Score=128.30 Aligned_cols=74 Identities=24% Similarity=0.477 Sum_probs=71.3
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
+|||+|||+.+|+++|+.+|++||.|..|+++.++ +++++|||||+|.+.++|.+|+.+++..|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998 899999999999999999999999999999999999876
No 87
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=3.3e-20 Score=142.21 Aligned_cols=84 Identities=29% Similarity=0.532 Sum_probs=78.8
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +|+++|||||.|.+.++|.+|| .|||..|+|++|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999999997 8999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 027515 184 KRTNIP 189 (222)
Q Consensus 184 a~~~~~ 189 (222)
++++.+
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987653
No 88
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.83 E-value=1.6e-21 Score=146.93 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=75.4
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
.....++|||+|||+.+|+++|+.+|++|| |..|+|+.+++++++|||||+|.+.++|.+||.+|+..|+||.|+|.++
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 334578999999999999999999999999 7799999998899999999999999999999988999999999999998
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
..+.
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 89
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=130.98 Aligned_cols=83 Identities=22% Similarity=0.432 Sum_probs=74.7
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
......++|||+|||+.+|+++|+.+|++|+ .|+++.++ +++++|||||+|.+.++|.+|| .||++.|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445678999999999999999999999874 67888887 8999999999999999999999 89999999999999
Q ss_pred eeccCCCC
Q 027515 182 SAKRTNIP 189 (222)
Q Consensus 182 ~~a~~~~~ 189 (222)
.+++++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987653
No 90
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=1.2e-20 Score=132.57 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=73.4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..+.++.++ +++++|||||+|.+.++|.+|| .||++.|+|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346899999999999999999999999999988888877 8999999999999999999999 89999999999999987
Q ss_pred cC
Q 027515 185 RT 186 (222)
Q Consensus 185 ~~ 186 (222)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 91
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1e-19 Score=129.71 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=70.8
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-Hc--CCceeCCeeeEEe
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LL--NETELHGRQLKVS 182 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l--~g~~l~gr~i~v~ 182 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.+ +|||||+|.+.++|.+|+ .| ++..|.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 345789999999999999999999999999999998753 899999999999999999 66 5788999999999
Q ss_pred eccCCC
Q 027515 183 AKRTNI 188 (222)
Q Consensus 183 ~a~~~~ 188 (222)
+++.+.
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 998765
No 92
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=1.2e-20 Score=141.42 Aligned_cols=86 Identities=28% Similarity=0.527 Sum_probs=79.7
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|.|+.|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334567899999999999999999999999999999999987 8999999999999999999999 89999999999999
Q ss_pred eeccCCCC
Q 027515 182 SAKRTNIP 189 (222)
Q Consensus 182 ~~a~~~~~ 189 (222)
.++++..+
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 93
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5e-21 Score=131.84 Aligned_cols=79 Identities=22% Similarity=0.358 Sum_probs=74.2
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||.|.+.++|.+|| .|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 347899999999999999999999999999999999997 7999999999999999999999 89999999999988776
Q ss_pred c
Q 027515 185 R 185 (222)
Q Consensus 185 ~ 185 (222)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=8.8e-20 Score=134.50 Aligned_cols=84 Identities=21% Similarity=0.374 Sum_probs=78.6
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|||+.+++++|+.+|++||.|..|+|+.+++++++|||||+|.+.++|.+|| .||+..|+|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345678999999999999999999999999999999999889999999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
|....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97654
No 95
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-20 Score=132.13 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=70.5
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcC--CceeCCeeeEEee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLN--ETELHGRQLKVSA 183 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~--g~~l~gr~i~v~~ 183 (222)
...++|||+|||+.+|+++|+.+|++||.|.+|+|+++ ||||||+|.+.++|.+|| .|+ +..|.||+|+|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45789999999999999999999999999999999853 799999999999999999 676 4789999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++.+.
T Consensus 89 A~~~~ 93 (105)
T 1sjq_A 89 SNHKE 93 (105)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 98765
No 96
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=133.47 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=74.2
Q ss_pred ccCCcEEEEeccCCCC------CHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCe-
Q 027515 106 EVDSRSIYVGNVDYAC------TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGR- 177 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr- 177 (222)
....++|||+|||+.+ |+++|+.+|++||.|..|+|+ ..+|+++|||||+|.+.++|.+|| .|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 3447899999999999 789999999999999999988 348999999999999999999999 8999999998
Q ss_pred eeEEeeccCC
Q 027515 178 QLKVSAKRTN 187 (222)
Q Consensus 178 ~i~v~~a~~~ 187 (222)
+|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 97
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=126.40 Aligned_cols=76 Identities=26% Similarity=0.518 Sum_probs=71.0
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+ ++||||+|.+.++|.+|| .||++.|+|+.|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3557899999999999999999999999999999987 569999999999999999 89999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8765
No 98
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.82 E-value=2.6e-20 Score=135.82 Aligned_cols=80 Identities=19% Similarity=0.357 Sum_probs=66.8
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCee-----eE
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQ-----LK 180 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~-----i~ 180 (222)
...++|||+|||+.+|+++|+.+|++||.|..|.|+.+ |||||+|.+.++|.+|| .||++.|+|+. |+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 34689999999999999999999999999999999754 99999999999999999 89999999998 77
Q ss_pred EeeccCCCCCCC
Q 027515 181 VSAKRTNIPGMK 192 (222)
Q Consensus 181 v~~a~~~~~~~~ 192 (222)
|..+.++.+...
T Consensus 88 v~~~~~~~~~~~ 99 (115)
T 3beg_B 88 VKVDGPRSPSYG 99 (115)
T ss_dssp EEECC----CCC
T ss_pred eccCCCCCCCCC
Confidence 777766554333
No 99
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=126.15 Aligned_cols=76 Identities=24% Similarity=0.474 Sum_probs=71.3
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+ +|||||+|.+.++|.+|| .||+..|+|++|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 457899999999999999999999999999999997 789999999999999999 899999999999999998
Q ss_pred CCCC
Q 027515 186 TNIP 189 (222)
Q Consensus 186 ~~~~ 189 (222)
++..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 100
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=130.15 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=70.1
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCce--eCCeeeEEee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETE--LHGRQLKVSA 183 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~--l~gr~i~v~~ 183 (222)
.++++|||+|||+.+|+++|+.+|++||.|.+|++++ +||||||+|.+.++|.+|+ .|++.. |.||+|+|.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 4578999999999999999999999999999999974 5899999999999999999 888764 8899999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++++.
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 98653
No 101
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=8.7e-20 Score=136.85 Aligned_cols=81 Identities=27% Similarity=0.481 Sum_probs=75.6
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999997 8999999999999999999999 89999999999999
Q ss_pred eec
Q 027515 182 SAK 184 (222)
Q Consensus 182 ~~a 184 (222)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 876
No 102
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-19 Score=127.19 Aligned_cols=77 Identities=23% Similarity=0.435 Sum_probs=70.8
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhC--CCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSC--GTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
.....++|||+|||+.+|+++|+.+|++| |.|..|+++ +|||||+|.+.++|.+|| .||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34467899999999999999999999999 999998875 789999999999999999 79999999999999
Q ss_pred eeccCCC
Q 027515 182 SAKRTNI 188 (222)
Q Consensus 182 ~~a~~~~ 188 (222)
.+++++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998755
No 103
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.82 E-value=7.6e-21 Score=132.28 Aligned_cols=78 Identities=37% Similarity=0.678 Sum_probs=71.8
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTN 187 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~ 187 (222)
++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.+ |.+|+ .|||..|+|+.|+|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999998 7999999999999999 99999 89999999999999999765
Q ss_pred C
Q 027515 188 I 188 (222)
Q Consensus 188 ~ 188 (222)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 104
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=131.56 Aligned_cols=84 Identities=17% Similarity=0.343 Sum_probs=77.1
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCcee--------
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETEL-------- 174 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l-------- 174 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.++++.++|||||+|.+.++|.+|| .|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 3345678999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred CCeeeEEeeccCC
Q 027515 175 HGRQLKVSAKRTN 187 (222)
Q Consensus 175 ~gr~i~v~~a~~~ 187 (222)
.+++|+|.+++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998743
No 105
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-20 Score=135.30 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=72.3
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|.+..+. +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 457899999999999999999999999998433222222 7889999999999999999999 89999999999999999
Q ss_pred cCCCC
Q 027515 185 RTNIP 189 (222)
Q Consensus 185 ~~~~~ 189 (222)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87653
No 106
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=128.20 Aligned_cols=80 Identities=25% Similarity=0.383 Sum_probs=73.5
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+. ++|||||+|.+.++|.+|| .||+..|+|++|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345678999999999999999999999999999999974 4899999999999999999 9999999999999999
Q ss_pred ccCCCC
Q 027515 184 KRTNIP 189 (222)
Q Consensus 184 a~~~~~ 189 (222)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987653
No 107
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=3.7e-20 Score=138.92 Aligned_cols=81 Identities=21% Similarity=0.346 Sum_probs=76.4
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCC---eeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEe
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGT---VNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS 182 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~ 182 (222)
....++|||+|||+.+|+++|+.+|++||. |..|+|+.++.|+++|||||+|.+.++|.+||.+|+..|+||.|+|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 345789999999999999999999999999 89999999988999999999999999999999999999999999999
Q ss_pred eccC
Q 027515 183 AKRT 186 (222)
Q Consensus 183 ~a~~ 186 (222)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9854
No 108
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=8.1e-20 Score=131.78 Aligned_cols=83 Identities=22% Similarity=0.414 Sum_probs=72.2
Q ss_pred CcccccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCee
Q 027515 100 TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQ 178 (222)
Q Consensus 100 ~~~~~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~ 178 (222)
..........++|||+|||+.+|+++|+.+|++||.|..|+|+ +|||||+|.+.++|.+|+ .|||..|+|+.
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3334455678999999999999999999999999999999997 799999999999999999 89999999999
Q ss_pred eEEeeccCCCC
Q 027515 179 LKVSAKRTNIP 189 (222)
Q Consensus 179 i~v~~a~~~~~ 189 (222)
|+|.+++.+..
T Consensus 95 l~V~~a~~~~~ 105 (108)
T 2jvo_A 95 LEVVYSKLPAK 105 (108)
T ss_dssp CEEESCSCCC-
T ss_pred EEEEEecCCCC
Confidence 99999987653
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.8e-20 Score=131.15 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=69.9
Q ss_pred cCCcEEEEeccCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCC--ceeCCeeeEEe
Q 027515 107 VDSRSIYVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNE--TELHGRQLKVS 182 (222)
Q Consensus 107 ~~~~~vfV~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g--~~l~gr~i~v~ 182 (222)
..+++|||+|||+ .+|+++|+.+|++||.|.+|+|+++ +|||||+|.+.++|..|| .|++ ..|.||+|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3578999999999 9999999999999999999999853 689999999999999999 7875 56999999999
Q ss_pred eccCCC
Q 027515 183 AKRTNI 188 (222)
Q Consensus 183 ~a~~~~ 188 (222)
+|+..+
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 998655
No 110
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=125.69 Aligned_cols=75 Identities=28% Similarity=0.518 Sum_probs=70.3
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+ ++||||+|.+.++|.+|| .||+..|+|+.|+|.+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 457899999999999999999999999999999997 569999999999999999 899999999999999998
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
+..
T Consensus 80 ~~~ 82 (90)
T 2dnp_A 80 KGQ 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 111
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=7.6e-20 Score=135.69 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=72.6
Q ss_pred cCCcEEEEeccCCCCCHHHHH----HHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 107 VDSRSIYVGNVDYACTPEEVQ----QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
...++|||+|||+.+++++|+ .+|++||.|..|.+. ++++++|||||+|.+.++|..|| .|||..|.|++|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 447899999999999999876 699999999988774 46889999999999999999999 99999999999999
Q ss_pred eeccCCC
Q 027515 182 SAKRTNI 188 (222)
Q Consensus 182 ~~a~~~~ 188 (222)
.+++.+.
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998754
No 112
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-20 Score=134.36 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=74.4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|.. .++.++ +++++|||||+|.+.++|.+||.||+..|.|+.|+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 45789999999999999999999999999888 566665 7899999999999999999999999999999999999998
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
++.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 113
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-20 Score=126.33 Aligned_cols=74 Identities=20% Similarity=0.476 Sum_probs=70.7
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
++|||+|||+.+|+++|+.+|++||.|..|+++.++ +++++|||||.|.+.++|.+|+ .++ ..|+|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998 7999999999999999999999 777 9999999999987
No 114
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=129.39 Aligned_cols=78 Identities=19% Similarity=0.431 Sum_probs=73.0
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.+ +|||||+|.+.++|.+|| .|++..|+|+.|+|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 345789999999999999999999999999999999864 899999999999999999 99999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 115
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=1.6e-20 Score=126.15 Aligned_cols=74 Identities=18% Similarity=0.386 Sum_probs=70.6
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
+|||+|||+.+|+++|+.+|++||.|..|+++.++ +++++|||||+|.+.++|.+||.+++..|+|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999987 799999999999999999999977999999999999875
No 116
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=128.75 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=69.7
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCC--ceeCCeeeEEee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNE--TELHGRQLKVSA 183 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g--~~l~gr~i~v~~ 183 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+. .||||||+|.+.++|.+|+ .|++ ..|.|++|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4578999999999999999999999999999999875 3899999999999999999 7765 569999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++.+.
T Consensus 88 a~~~~ 92 (104)
T 1wex_A 88 STSKR 92 (104)
T ss_dssp CSSSS
T ss_pred ccCcc
Confidence 98755
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=3e-20 Score=126.93 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=67.4
Q ss_pred CcEEEEeccCCCC------CHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCe-eeE
Q 027515 109 SRSIYVGNVDYAC------TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGR-QLK 180 (222)
Q Consensus 109 ~~~vfV~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr-~i~ 180 (222)
+++|||+|||+.+ |+++|+.+|++||.|..|+|+ ..+|+++|||||+|.+.++|.+|| .|||..|+|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 789999999999999999987 348999999999999999999999 8999999999 888
Q ss_pred Ee
Q 027515 181 VS 182 (222)
Q Consensus 181 v~ 182 (222)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 118
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.2e-19 Score=124.95 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=68.4
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
+.-|||+||++.+|+++|+.+|.+||+|.+++++. ++|||||+|.+.++|.+|+ .||+..|.||+|+|..|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56799999999999999999999999999999974 6999999999999999999 999999999999999884
No 119
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=2.5e-19 Score=126.70 Aligned_cols=81 Identities=16% Similarity=0.383 Sum_probs=70.9
Q ss_pred cccccccCCcEEEEeccCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCee
Q 027515 101 QAEKEEVDSRSIYVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQ 178 (222)
Q Consensus 101 ~~~~~~~~~~~vfV~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~ 178 (222)
.........++|||+|||+ .+|+++|+.+|++||.|..|+|. +|||||+|.+.++|.+|| .|||..|+|++
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3334455688999999998 99999999999999999999983 899999999999999999 89999999999
Q ss_pred eEEeeccCCC
Q 027515 179 LKVSAKRTNI 188 (222)
Q Consensus 179 i~v~~a~~~~ 188 (222)
|+|.+++++.
T Consensus 87 l~V~~a~~~~ 96 (97)
T 2xnq_A 87 LILEVSSSNA 96 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCCCC
Confidence 9999997653
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=126.96 Aligned_cols=79 Identities=20% Similarity=0.338 Sum_probs=71.9
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++||.|. ++++. ++++|||||+|.+.++|.+|| .||+..|+|+.|+|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34578999999999999999999999999997 66664 467999999999999999999 99999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-21 Score=142.07 Aligned_cols=82 Identities=27% Similarity=0.424 Sum_probs=77.2
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeE--------EEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCC
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNR--------VTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHG 176 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~g 176 (222)
...++|||+|||+.+|+++|+.+|++||.|.. |+|+.++ +++++|||||+|.+.++|.+|| .||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 9999987 7999999999999999999999 799999999
Q ss_pred eeeEEeeccCCC
Q 027515 177 RQLKVSAKRTNI 188 (222)
Q Consensus 177 r~i~v~~a~~~~ 188 (222)
+.|+|.+++++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999998765
No 122
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.3e-20 Score=136.30 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=73.8
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeC-CCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++||.|..+.++.+ .+|+++|||||+|.+.++|.+||.||++.|+||.|+|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 345689999999999999999999999999988555554 4899999999999999999999999999999999999998
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 123
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=128.41 Aligned_cols=75 Identities=27% Similarity=0.467 Sum_probs=71.2
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCCC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNI 188 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~~ 188 (222)
++|||+|||+.+|+++|+.+|++||.|..|+|+.+ ++|||||+|.+.++|.+|+ .|++..|+|+.|+|.+++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999876 7899999999999999999 899999999999999998765
No 124
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=3e-20 Score=133.72 Aligned_cols=82 Identities=24% Similarity=0.328 Sum_probs=76.5
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCC---eeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEe
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGT---VNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS 182 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~ 182 (222)
....++|||+|||+.+|+++|+.+|++||. |..|+|+.++.|+++|||||+|.+.++|.+||.+|+..|+||.|+|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 346789999999999999999999999998 89999999888999999999999999999999999999999999999
Q ss_pred eccCC
Q 027515 183 AKRTN 187 (222)
Q Consensus 183 ~a~~~ 187 (222)
++..+
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98653
No 125
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=1.2e-19 Score=131.55 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=71.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++|| .|..|.|+. .+++|||||+|.+.++|.+|| .|||..|+||.|+|.++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3467999999999999999999999999 899998853 357999999999999999999 89999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+..+
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7654
No 126
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=125.55 Aligned_cols=78 Identities=19% Similarity=0.399 Sum_probs=72.0
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC--CeeeEEe
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH--GRQLKVS 182 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~--gr~i~v~ 182 (222)
....++|||+|||+.+|+++|+.+|++||.|..|.++.+ +|||||+|.+.++|.+|| .||+..|. |+.|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 345689999999999999999999999999999998743 789999999999999999 89999999 9999999
Q ss_pred eccCCC
Q 027515 183 AKRTNI 188 (222)
Q Consensus 183 ~a~~~~ 188 (222)
++++++
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998765
No 127
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=123.00 Aligned_cols=75 Identities=24% Similarity=0.447 Sum_probs=69.9
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-Hc-CCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LL-NETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l-~g~~l~gr~i~v~~ 183 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+++. ++|||||+|.+.++|.+|+ .| ++..|+|++|+|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 35578999999999999999999999999999999985 5899999999999999999 68 99999999999999
Q ss_pred cc
Q 027515 184 KR 185 (222)
Q Consensus 184 a~ 185 (222)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=129.43 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=70.5
Q ss_pred ccCCcEEEEeccCCC-CCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcC--CceeCCeeeEE
Q 027515 106 EVDSRSIYVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLN--ETELHGRQLKV 181 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~--g~~l~gr~i~v 181 (222)
...+++|||+|||+. +|+++|+.+|++||.|.+|+|+ +++|||||+|.+.++|..|| .|+ +..|.||+|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456889999999998 9999999999999999999997 35899999999999999999 775 56799999999
Q ss_pred eeccCCC
Q 027515 182 SAKRTNI 188 (222)
Q Consensus 182 ~~a~~~~ 188 (222)
.+++.+.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9998655
No 129
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=8.3e-20 Score=128.67 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=74.0
Q ss_pred cCCcEEEEeccCCCCCHHHHH----HHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 107 VDSRSIYVGNVDYACTPEEVQ----QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
...++|||+|||+.+|+++|+ .+|++||.|..|+++ ++++++|||||+|.+.++|.+|+ .|||..|+|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 457899999999999999999 999999999999886 35778999999999999999999 89999999999999
Q ss_pred eeccCCC
Q 027515 182 SAKRTNI 188 (222)
Q Consensus 182 ~~a~~~~ 188 (222)
.+++++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998764
No 130
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.9e-20 Score=135.14 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=73.8
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCe----eEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEe
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTV----NRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS 182 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i----~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~ 182 (222)
...++|||+|||+.+|+++|+.+|++||.| ..|+|+.+++|+++|||||+|.+.++|.+||..|+..|+||.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 456899999999999999999999999975 6899999889999999999999999999999669999999999998
Q ss_pred eccC
Q 027515 183 AKRT 186 (222)
Q Consensus 183 ~a~~ 186 (222)
.+..
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 131
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=7.8e-20 Score=130.14 Aligned_cols=81 Identities=27% Similarity=0.546 Sum_probs=76.5
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.+++++++|||||+|.+.++|.+||. +++.|+|+.|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 45689999999999999999999999999999999999999999999999999999999999 99999999999999976
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-19 Score=127.98 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=71.2
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|.+|+++ +++|||||.|.+.++|.+|| .||+..|+|+.|+|.+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 346899999999999999999999999999999997 46899999999999999999 999999999999999997
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=127.53 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=71.8
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++||.|..+ ..+++++|||||+|.+.++|.+|| .|++..|+|+.|+|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3467899999999999999999999999988765 347889999999999999999999 79999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 8755
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.6e-19 Score=127.34 Aligned_cols=75 Identities=17% Similarity=0.419 Sum_probs=70.0
Q ss_pred cCCcEEEEeccCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+ .+|+++|+.+|++||.|..|+|. +|||||+|.+.++|.+|| .||+..|.|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4578999999999 99999999999999999999984 799999999999999999 89999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 81 ~~~~ 84 (96)
T 2kvi_A 81 SSNA 84 (96)
T ss_dssp ECCC
T ss_pred CcCC
Confidence 8765
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=4.2e-19 Score=128.12 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=70.2
Q ss_pred cCCcEEEEeccCCC-CCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+. +|+++|+.+|++||.|..|+| ++|||||+|.+.++|.+|| .|++..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44689999999999 999999999999999999998 4899999999999999999 99999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+...
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8644
No 136
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=131.07 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=70.5
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcC--CceeCCeeeEEee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLN--ETELHGRQLKVSA 183 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~--g~~l~gr~i~v~~ 183 (222)
..+++|||+|||+.+|+++|+.+|++||.|.+|+|+.+ ||||||+|.+.++|.+|| .|+ +..|.|++|+|.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 35789999999999999999999999999999999864 899999999999999999 777 4689999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++.+.
T Consensus 104 a~~k~ 108 (119)
T 2ad9_A 104 SNHKE 108 (119)
T ss_dssp CSSSS
T ss_pred ccCCC
Confidence 98765
No 137
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.6e-19 Score=124.53 Aligned_cols=76 Identities=24% Similarity=0.452 Sum_probs=69.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCC-eeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCC-ceeCCeeeEEee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGT-VNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNE-TELHGRQLKVSA 183 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g-~~l~gr~i~v~~ 183 (222)
...++|||+|||+.+|+++|+.+|++||. |..+.+. ++|||||+|.+.++|.+|| .||+ ..|+|+.|+|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 34689999999999999999999999999 6666663 5899999999999999999 8999 999999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++++.
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98754
No 138
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.2e-19 Score=134.38 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=72.7
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCee--EEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVN--RVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~--~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++| .|. .|+|+.++.|+++|||||+|.+.++|.+||.+++..|+||.|+|.++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 457889999999999999999999999 576 89999998899999999999999999999966889999999999987
Q ss_pred cC
Q 027515 185 RT 186 (222)
Q Consensus 185 ~~ 186 (222)
..
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 139
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=136.25 Aligned_cols=83 Identities=24% Similarity=0.264 Sum_probs=72.7
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEE------EEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV------TILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQL 179 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v------~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i 179 (222)
...++|||+|||+.+|+++|+.+|++||.|..| .+....+++++|||||+|.+.++|.+|| .|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 456899999999999999999999999998774 1222247899999999999999999999 899999999999
Q ss_pred EEeeccCCCC
Q 027515 180 KVSAKRTNIP 189 (222)
Q Consensus 180 ~v~~a~~~~~ 189 (222)
+|.+|++..+
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 140
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=6.8e-19 Score=141.31 Aligned_cols=81 Identities=21% Similarity=0.405 Sum_probs=75.7
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
.+.++|||+|||+.+|+++|+.+|++||.|.+|+|++++ +++++|||||.|.+.++|.+|| .+++..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 346799999999999999999999999999999999998 8999999999999999999999 99999999999999998
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 141
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=6.2e-19 Score=128.11 Aligned_cols=79 Identities=27% Similarity=0.399 Sum_probs=72.9
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.+ +.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34689999999999999999999999999999999865 456999999999999999999 799999999999999997
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
++
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 142
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=129.16 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=71.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+. ++|||||+|.+.++|.+|| .|||..|+|+.|+|.+++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3467999999999999999999999999999998873 6899999999999999999 899999999999999997
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=121.57 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=69.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..| +.++ +++ ||||+|.+.++|.+||.||++.|+|+.|+|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 346799999999999999999999999999987 4454 555 9999999999999999999999999999999887
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 654
No 144
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-18 Score=120.17 Aligned_cols=77 Identities=23% Similarity=0.408 Sum_probs=70.5
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|| .+|+++|+.+|++||.|..|.|. +++|||||+|.+.++|.+|| .||+..|+|++|+|.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3446789999996 89999999999999999999985 57899999999999999999 9999999999999999
Q ss_pred ccCCC
Q 027515 184 KRTNI 188 (222)
Q Consensus 184 a~~~~ 188 (222)
++++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98765
No 145
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.5e-18 Score=136.56 Aligned_cols=83 Identities=22% Similarity=0.483 Sum_probs=74.9
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||.|.+.++|.+||..++..|+|+.|.|.++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 456899999999999999999999999999999999998 8999999999999999999999668999999999999998
Q ss_pred CCCC
Q 027515 186 TNIP 189 (222)
Q Consensus 186 ~~~~ 189 (222)
++..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 8764
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=7.8e-19 Score=133.54 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=74.4
Q ss_pred ccccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 104 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 104 ~~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
......++|||+|||+.+|+++|+.+|++||.|..|+|+.+ ++|||||+|.+.++|.+|| .|||..|+|++|+|.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34456789999999999999999999999999999999865 6899999999999999999 899999999999999
Q ss_pred eccCCC
Q 027515 183 AKRTNI 188 (222)
Q Consensus 183 ~a~~~~ 188 (222)
++++++
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998754
No 147
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=9.7e-19 Score=136.92 Aligned_cols=81 Identities=21% Similarity=0.382 Sum_probs=76.8
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|.|+.+++++++|||||+|.+.++|.+|| .||+..|+|+.|+|.+|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3468999999999999999999999999999999999889999999999999999999999 899999999999999997
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 64
No 148
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2.3e-18 Score=135.49 Aligned_cols=83 Identities=19% Similarity=0.482 Sum_probs=76.6
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||.|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 3467899999999999999999999999999999999998 799999999999999999999977999999999999998
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
..+.
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 7653
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=3e-18 Score=131.13 Aligned_cols=80 Identities=26% Similarity=0.461 Sum_probs=76.4
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
.++|||+|||+.+|+++|+.+|++||.|..|+++.++ +|+++|||||.|.+.++|.+|+ .|++..|.|+.|+|.++++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999998 8999999999999999999999 8999999999999999976
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 150
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=5.2e-18 Score=125.76 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=69.5
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccE-EEEEEcCHHHHHHHH-HcCCceeCC--eeeEEeec
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF-AYVEFVEIDAVQNAL-LLNETELHG--RQLKVSAK 184 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~-afV~f~~~~~a~~al-~l~g~~l~g--r~i~v~~a 184 (222)
-..|||+||++.+|+++|+.+|++||.|.+|+|+.. ++|| |||+|.+.++|.+|+ .|||..|.| +.|+|.++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 457899999999999999999999999999988753 3688 999999999999999 999999988 99999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8764
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.5e-18 Score=130.01 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=76.5
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+++.++ ++.++|||||.|.+.++|.+|+ .|||..|+|++|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34457899999999999999999999999999999999997 8999999999999999999999 899999999999999
Q ss_pred ecc
Q 027515 183 AKR 185 (222)
Q Consensus 183 ~a~ 185 (222)
+|+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=3.2e-18 Score=131.36 Aligned_cols=81 Identities=27% Similarity=0.413 Sum_probs=76.7
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
..++|||+|||+.+|+++|+.+|++||.|..|+++.++ +++++|||||.|.+.++|.+|+ .|++..|.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 36899999999999999999999999999999999987 8999999999999999999999 899999999999999997
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.8e-18 Score=129.82 Aligned_cols=79 Identities=29% Similarity=0.454 Sum_probs=74.7
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccCCC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRTNI 188 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~~~ 188 (222)
++|||+|||+.+|+++|+.+|++||.|.+|+|+.+++++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999999988899999999999999999999 999999999999999997654
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.76 E-value=4.9e-18 Score=135.54 Aligned_cols=82 Identities=24% Similarity=0.456 Sum_probs=78.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||.|.+.++|.+|| .||+..|+|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999997 8999999999999999999999 89999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
++++
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8765
No 155
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=1.5e-18 Score=133.12 Aligned_cols=81 Identities=23% Similarity=0.477 Sum_probs=76.9
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +|+++|||||.|.+.++|.+|+.+++..|+|++|+|.+|.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 346799999999999999999999999999999999997 8999999999999999999999999999999999999998
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 156
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=5.7e-18 Score=130.16 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=70.2
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCC--eeeEEeecc
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHG--RQLKVSAKR 185 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~g--r~i~v~~a~ 185 (222)
..+|||+|||+.+|+++|+.+|++||.|.+|+|... .++|||||+|.+.++|..|+ .|||..|.| ++|+|.+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 457999999999999999999999999999998753 35899999999999999999 999999965 999999998
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=3.1e-18 Score=118.70 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=69.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
..++|||+|||+.+|+++|+.+|++| .|..|+|. +++|||||+|.+.++|.+|+ .||+..|+|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46789999999999999999999999 99999985 67999999999999999999 8999999999999999976
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 158
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=120.03 Aligned_cols=79 Identities=22% Similarity=0.218 Sum_probs=70.6
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEE-EeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVT-ILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~-i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+ |+.++. .|.|||+|.+.++|.+|| .|||..|+|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3468999999999999999999999999999995 777652 234999999999999999 89999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8763
No 159
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=3.6e-18 Score=118.87 Aligned_cols=77 Identities=25% Similarity=0.340 Sum_probs=63.4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
....+|||+|||+++|+++|+.+|++||.|.+|+|+.+ ++|||||+|.+.++|.++.. ..+.+.|++|.|.+|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEcCC
Confidence 45789999999999999999999999999999999864 79999999999999884322 14456799999999987
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 64
No 160
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.75 E-value=7.5e-18 Score=133.59 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=75.1
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+++.+++++|||||+|.+.++|.+||.+.+..|+|+.|+|.+++.
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35689999999999999999999999999999999998889999999999999999999996666799999999999875
Q ss_pred C
Q 027515 187 N 187 (222)
Q Consensus 187 ~ 187 (222)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 161
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=1.1e-17 Score=131.72 Aligned_cols=82 Identities=22% Similarity=0.458 Sum_probs=78.1
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+++.++ ++.++|||||.|.+.++|.+|+ .|||..|+|+.|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999998 8999999999999999999999 89999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 162
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=118.40 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=66.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccCC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTN 187 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~~ 187 (222)
..++|||+|||+.+|+++|+.+|++||.|..|+|+.+ ++|||||+|.+.++|++|+.. .+.+.|++|+|.+++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 4689999999999999999999999999999999854 799999999999999876432 46679999999999876
Q ss_pred C
Q 027515 188 I 188 (222)
Q Consensus 188 ~ 188 (222)
.
T Consensus 79 ~ 79 (88)
T 1wf0_A 79 H 79 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 163
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.8e-18 Score=124.65 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=68.6
Q ss_pred cEEEEecc----CCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcC----HHH----HHHHH---HcCCce
Q 027515 110 RSIYVGNV----DYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVE----IDA----VQNAL---LLNETE 173 (222)
Q Consensus 110 ~~vfV~nL----p~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~----~~~----a~~al---~l~g~~ 173 (222)
..|||+|| |+.+++..|+.+|++||.|.+|.++.|+ ||+++|||||.|.+ +.. |.+|+ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999 99999999999995 322 67776 369999
Q ss_pred eCCeeeEEeeccC
Q 027515 174 LHGRQLKVSAKRT 186 (222)
Q Consensus 174 l~gr~i~v~~a~~ 186 (222)
|+||+|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 164
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=8.9e-18 Score=129.43 Aligned_cols=78 Identities=23% Similarity=0.487 Sum_probs=74.7
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+++.++ +|+++|||||.|.+.++|.+|+ .|||..|+|++|+|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 347899999999999999999999999999999999997 8999999999999999999999 89999999999999987
No 165
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=115.45 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=65.5
Q ss_pred CcE-EEEeccCCCCCHHH----HHHHhhhC-CCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 109 SRS-IYVGNVDYACTPEE----VQQHFQSC-GTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 109 ~~~-vfV~nLp~~~t~~~----L~~~F~~~-G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
..| |||+|||+.++.++ |+.+|++| |+|..| ++ |+|||.|.+.++|.+|+ .|+|..|.||+|+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 444 99999999999988 55899999 499888 23 99999999999999999 99999999999999
Q ss_pred eeccCCCCCC
Q 027515 182 SAKRTNIPGM 191 (222)
Q Consensus 182 ~~a~~~~~~~ 191 (222)
.+|+.+..-.
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9998876433
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=9.6e-18 Score=134.59 Aligned_cols=80 Identities=20% Similarity=0.403 Sum_probs=74.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
..++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +.++|||||.|.+.++|.+|| .|||..|+|++|+|.+|++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 46789999999999999999999999999999999876 347999999999999999999 8999999999999999976
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=120.77 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=66.3
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-C---CCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-F---GQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t---~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
...++|||+|||+.+|+++|+.+|++||.|. +.++.++ + |+++|||||+|.+.++|.+|| .|+ .|+|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3468999999999999999999999999999 8888776 5 799999999999999999999 773 477777777
Q ss_pred eecc
Q 027515 182 SAKR 185 (222)
Q Consensus 182 ~~a~ 185 (222)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6554
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=1.8e-17 Score=114.12 Aligned_cols=72 Identities=31% Similarity=0.556 Sum_probs=66.8
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhC----C-------CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeC
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSC----G-------TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELH 175 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~ 175 (222)
...++|||+|||+.+|+++|+.+|++| | .|.+|+++. ++|||||+|.+.++|.+|+.||+..|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----~kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----SSSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----CCcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 357899999999999999999999999 8 899999874 489999999999999999999999999
Q ss_pred CeeeEEee
Q 027515 176 GRQLKVSA 183 (222)
Q Consensus 176 gr~i~v~~ 183 (222)
|+.|+|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=2.4e-17 Score=127.15 Aligned_cols=80 Identities=23% Similarity=0.466 Sum_probs=74.3
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC---CeeeEE
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH---GRQLKV 181 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~---gr~i~v 181 (222)
....++|||+|||+.+|+++|+.+|++||.|.+|+++.+++|+++|||||+|.+.++|.+|+ .|||..+. |++|+|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 34678999999999999999999999999999999999988999999999999999999999 99998776 499999
Q ss_pred eecc
Q 027515 182 SAKR 185 (222)
Q Consensus 182 ~~a~ 185 (222)
.+|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=2.5e-17 Score=131.38 Aligned_cols=81 Identities=30% Similarity=0.461 Sum_probs=73.3
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||.|.+.++|.+|| .|++..|.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 457899999999999999999999999999999999998 8999999999999999999999 79999999999999887
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 171
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=4.7e-17 Score=124.77 Aligned_cols=79 Identities=28% Similarity=0.515 Sum_probs=74.7
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCC--eeeEE
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHG--RQLKV 181 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~g--r~i~v 181 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+++.++ +++++|||||.|.+.++|.+|+ .|||..|.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3457899999999999999999999999999999999998 8999999999999999999999 899999988 99999
Q ss_pred eec
Q 027515 182 SAK 184 (222)
Q Consensus 182 ~~a 184 (222)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 172
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=118.93 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=68.7
Q ss_pred CCcEEEE--eccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCcee-----CCeee
Q 027515 108 DSRSIYV--GNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETEL-----HGRQL 179 (222)
Q Consensus 108 ~~~~vfV--~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l-----~gr~i 179 (222)
+.++||| +||++.+|+++|+.+|++||.|..|.|+. .+|||||+|.+.++|.+|+ .|||..| .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 4678999 66999999999999999999999998763 4799999999999999999 8999998 79999
Q ss_pred EEeeccCCC
Q 027515 180 KVSAKRTNI 188 (222)
Q Consensus 180 ~v~~a~~~~ 188 (222)
.|.+++..+
T Consensus 99 ~v~~a~~~p 107 (114)
T 2cq2_A 99 YLNFVEKVQ 107 (114)
T ss_dssp EEEEESCCC
T ss_pred EEEecccCc
Confidence 999997544
No 173
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.71 E-value=4e-17 Score=130.54 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=70.8
Q ss_pred CCcEEEEeccC-CCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 108 DSRSIYVGNVD-YACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 108 ~~~~vfV~nLp-~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
.+++|||+||| +.+|+++|+.+|++||.|.+|+|+.+ ++|||||+|.+.++|.+|| .|||..|.|+.|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46799999999 89999999999999999999999864 4899999999999999999 899999999999999997
Q ss_pred CC
Q 027515 186 TN 187 (222)
Q Consensus 186 ~~ 187 (222)
..
T Consensus 79 ~~ 80 (205)
T 3tyt_A 79 QP 80 (205)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 174
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.71 E-value=9.7e-17 Score=115.03 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=71.7
Q ss_pred cCCcEEEEeccCC-----CCCHHHHHHHhhhCCCeeEEEEeeCC-C-CCcccEEEEEEcCHHHHHHHH-HcCCceeCCee
Q 027515 107 VDSRSIYVGNVDY-----ACTPEEVQQHFQSCGTVNRVTILTDK-F-GQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQ 178 (222)
Q Consensus 107 ~~~~~vfV~nLp~-----~~t~~~L~~~F~~~G~i~~v~i~~~~-t-~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~ 178 (222)
..+++|+|+||.. ..++++|+.+|++||.|.+|+|+.++ + ++++|||||.|.+.++|.+|+ .|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999962 24789999999999999999999986 3 689999999999999999999 99999999999
Q ss_pred eEEeeccC
Q 027515 179 LKVSAKRT 186 (222)
Q Consensus 179 i~v~~a~~ 186 (222)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 175
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.71 E-value=4.1e-17 Score=119.92 Aligned_cols=76 Identities=24% Similarity=0.413 Sum_probs=70.0
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|| .+|+++|+.+|++||.|..|+|. +++|||||+|.+.++|.+|| .||+..|+|+.|+|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 356789999996 69999999999999999999986 57899999999999999999 99999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
+++.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-16 Score=117.56 Aligned_cols=74 Identities=26% Similarity=0.345 Sum_probs=67.0
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccE-EEEEEcCHHHHHHHH-HcCCceeCC--eeeEEeecc
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF-AYVEFVEIDAVQNAL-LLNETELHG--RQLKVSAKR 185 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~-afV~f~~~~~a~~al-~l~g~~l~g--r~i~v~~a~ 185 (222)
..|||+|||+.+|+++|+.+|++||.|.+|+|+. + .|| |||+|.+.++|..|+ .|||..|.| +.|+|.+|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 3578999999999999999999999999999875 2 386 999999999999999 999999987 699999998
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=5.8e-17 Score=125.40 Aligned_cols=78 Identities=22% Similarity=0.391 Sum_probs=71.5
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
....++|||+|||+.+|+++|+.+|++||.|..+ ..++.++|||||+|.+.++|.+|| .|||..|+|+.|+|.++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 3467899999999999999999999999987655 457899999999999999999999 89999999999999999
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
+++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 178
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=8.4e-17 Score=122.97 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=73.5
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCee--eEE
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQ--LKV 181 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~--i~v 181 (222)
....++|||+|||+.+|+++|+.+|++||.|..|+++.++ +|.++|||||.|.+.++|.+|+ .|||..|.|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 3457899999999999999999999999999999999998 8999999999999999999999 89999999975 888
Q ss_pred eec
Q 027515 182 SAK 184 (222)
Q Consensus 182 ~~a 184 (222)
.+|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=3e-17 Score=125.86 Aligned_cols=79 Identities=20% Similarity=0.498 Sum_probs=72.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeeccC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~~ 186 (222)
.+++|||+|||+.+|+++|+.+|++||.|.+|+|+.++ +|+++|||||.|.+.++|.+||. ++..|+|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 46899999999999999999999999999999999997 89999999999999999999995 36789999999998764
Q ss_pred C
Q 027515 187 N 187 (222)
Q Consensus 187 ~ 187 (222)
+
T Consensus 81 ~ 81 (167)
T 2cjk_A 81 R 81 (167)
T ss_dssp H
T ss_pred h
Confidence 3
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=8.1e-17 Score=124.12 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=73.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CC--CcccEEEEEEcCHHHHHHHH-HcCCceeC---CeeeE
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FG--QPKGFAYVEFVEIDAVQNAL-LLNETELH---GRQLK 180 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~--~~kg~afV~f~~~~~a~~al-~l~g~~l~---gr~i~ 180 (222)
..++|||+|||+.+|+++|+.+|++||.|.+|+|++++ ++ +++|||||.|.+.++|.+|+ .|++..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 36799999999999999999999999999999999998 54 89999999999999999999 89998876 67888
Q ss_pred EeeccCCC
Q 027515 181 VSAKRTNI 188 (222)
Q Consensus 181 v~~a~~~~ 188 (222)
+.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876543
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=1.4e-16 Score=132.59 Aligned_cols=81 Identities=19% Similarity=0.348 Sum_probs=74.2
Q ss_pred ccCCcEEEEeccCCCCCHHHHH----HHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQ----QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
....++|||+|||+.+|+++|+ .+|++||.|..|+|+. +++++|||||+|.+.++|.+|| .|||..|.|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3558899999999999999976 8999999999999875 7889999999999999999999 9999999999999
Q ss_pred EeeccCCC
Q 027515 181 VSAKRTNI 188 (222)
Q Consensus 181 v~~a~~~~ 188 (222)
|.+++.+.
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997644
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=2e-16 Score=131.70 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=78.4
Q ss_pred ccCCcEEEEeccCCC-CCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
....++|||+|||+. +|+++|+.+|++||.|..|+|+.+.+|+++|||||.|.+.++|.+|+ .|||..|+|++|+|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 346789999999999 59999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 027515 184 KRTNIP 189 (222)
Q Consensus 184 a~~~~~ 189 (222)
+.++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 987653
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.68 E-value=1.4e-16 Score=133.17 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=76.9
Q ss_pred ccCCcEEEEeccCCC-CCHHHHHHHhhhCCCeeEEEEeeCCC--CCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEe
Q 027515 106 EVDSRSIYVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKF--GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS 182 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~t--~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~ 182 (222)
....++|||+|||+. +|+++|+.+|++||.|..|+|+.+.. +.++|||||.|.+.++|.+||.|||..|+|++|+|.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVS 286 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEE
Confidence 345789999999999 99999999999999999999998875 999999999999999999999999999999999999
Q ss_pred eccCCC
Q 027515 183 AKRTNI 188 (222)
Q Consensus 183 ~a~~~~ 188 (222)
++++++
T Consensus 287 ~a~~k~ 292 (292)
T 2ghp_A 287 LADKKP 292 (292)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998763
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=7.4e-17 Score=131.47 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=70.4
Q ss_pred ccCCcEEEEeccCCCC---------CHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCcee-
Q 027515 106 EVDSRSIYVGNVDYAC---------TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETEL- 174 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~---------t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l- 174 (222)
....++|||+|||+.+ ++++|+.+|++||.|.+|+|+. ++|||||+|.+.++|+.|+ .|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4467899999999998 7999999999999999999984 5899999999999999999 9999999
Q ss_pred -----------CCeeeEEeeccCCC
Q 027515 175 -----------HGRQLKVSAKRTNI 188 (222)
Q Consensus 175 -----------~gr~i~v~~a~~~~ 188 (222)
.|+.|.|.||+..+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999998765
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=3e-16 Score=127.17 Aligned_cols=78 Identities=28% Similarity=0.440 Sum_probs=72.9
Q ss_pred ccCCcEEEEeccCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 106 EVDSRSIYVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
....++|||+|||+ .+|+++|+.+|++||.|..|+|+.++ +|||||+|.+.++|.+|| .|++..|.|+.|+|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999 99999999999999999999998765 799999999999999999 8999999999999999
Q ss_pred ccCC
Q 027515 184 KRTN 187 (222)
Q Consensus 184 a~~~ 187 (222)
++..
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9765
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-15 Score=109.61 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=68.8
Q ss_pred ccCCcEEEEeccCCCCC-----------HHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCce
Q 027515 106 EVDSRSIYVGNVDYACT-----------PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETE 173 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t-----------~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~ 173 (222)
...+++|+|+||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|.+|| .|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 35688999999944332 5799999999999999966 444 37999999999999999999 999999
Q ss_pred eCCeeeEEeeccCCC
Q 027515 174 LHGRQLKVSAKRTNI 188 (222)
Q Consensus 174 l~gr~i~v~~a~~~~ 188 (222)
|+||+|+|.++.++.
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999997654
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=5.4e-17 Score=125.57 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=72.7
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeecc
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKR 185 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a~ 185 (222)
....++|||+|||+.+|+++|+.+|.+||.|..+.+....+++++|||||.|.+.++|.+||.||+..|.|+.|+|.++.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 45688999999999999999999999999876633333347899999999999999999999999999999999999997
Q ss_pred CCC
Q 027515 186 TNI 188 (222)
Q Consensus 186 ~~~ 188 (222)
++.
T Consensus 90 ~~~ 92 (175)
T 1fje_B 90 GRD 92 (175)
T ss_dssp CSS
T ss_pred Ccc
Confidence 653
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=8.6e-16 Score=127.89 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=77.3
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeec
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a 184 (222)
...++|||+|||+.+|+++|+.+|++||.|..|+++.++ +|.++|||||.|.+.++|.+|+ .|++..|+|+.|+|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 346799999999999999999999999999999999998 8999999999999999999999 99999999999999999
Q ss_pred cCCC
Q 027515 185 RTNI 188 (222)
Q Consensus 185 ~~~~ 188 (222)
.++.
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7654
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=7.1e-16 Score=128.89 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=72.2
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEeec
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAK 184 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~~a 184 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|+.++.+ ++|||||+|.+.++|.+||.+++..|+|+.|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 3456889999999999999999999999999999999998754 589999999999999999999999999999999988
Q ss_pred cCC
Q 027515 185 RTN 187 (222)
Q Consensus 185 ~~~ 187 (222)
..+
T Consensus 116 ~~~ 118 (292)
T 2ghp_A 116 TEC 118 (292)
T ss_dssp CSC
T ss_pred CCC
Confidence 643
No 190
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=2.1e-15 Score=118.57 Aligned_cols=76 Identities=30% Similarity=0.538 Sum_probs=67.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhC----C-------CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSC----G-------TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHG 176 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~g 176 (222)
..++|||+|||+.+|+++|+.+|++| | .|..+.+ ++++|||||+|.+.++|.+||.||+..|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHGGGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHHHhcCCEEcC
Confidence 36899999999999999999999999 4 5555555 467999999999999999999999999999
Q ss_pred eeeEEeeccCCC
Q 027515 177 RQLKVSAKRTNI 188 (222)
Q Consensus 177 r~i~v~~a~~~~ 188 (222)
+.|+|.++....
T Consensus 78 ~~i~v~~~~~~~ 89 (198)
T 2yh0_A 78 QSLKIRRPHDYQ 89 (198)
T ss_dssp EEEEEECCCCCC
T ss_pred ceEEEeCCCCCC
Confidence 999999987654
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=8.7e-16 Score=121.22 Aligned_cols=76 Identities=29% Similarity=0.442 Sum_probs=71.0
Q ss_pred CcEEEEeccCC-CCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeeccC
Q 027515 109 SRSIYVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKRT 186 (222)
Q Consensus 109 ~~~vfV~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~~ 186 (222)
+++|||+|||+ .+|+++|+.+|++||.|..|+|+.++ +|||||.|.+.++|.+|| .|++..|.|+.|+|.+++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 67999999999 99999999999999999999998764 789999999999999999 7999999999999999976
Q ss_pred CC
Q 027515 187 NI 188 (222)
Q Consensus 187 ~~ 188 (222)
..
T Consensus 79 ~~ 80 (198)
T 1qm9_A 79 QN 80 (198)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1.5e-15 Score=126.23 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=70.6
Q ss_pred ccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC-CeeeEEee
Q 027515 106 EVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH-GRQLKVSA 183 (222)
Q Consensus 106 ~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~-gr~i~v~~ 183 (222)
....++|||+|||+.+|+++|+.+|++||.|.+|+|+.++ +|||||+|.+.++|.+|| .|||..|. |+.|+|.|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3457899999999999999999999999999999998654 689999999999999999 89999999 99999999
Q ss_pred cc
Q 027515 184 KR 185 (222)
Q Consensus 184 a~ 185 (222)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=1.4e-15 Score=125.65 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=71.1
Q ss_pred cccCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 105 EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 105 ~~~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
.....++|||+|||+.+|+++|+.+|++||.|..|+|. +++|||||.|.+.++|.+|| .|+|..|.|+.|+|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34567899999999999999999999999999999996 35899999999999999999 8999999999999999
Q ss_pred ccC
Q 027515 184 KRT 186 (222)
Q Consensus 184 a~~ 186 (222)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 865
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.62 E-value=2.7e-16 Score=112.48 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=63.8
Q ss_pred EeccCCCCCHHHHHHHh------------hhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 114 VGNVDYACTPEEVQQHF------------QSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 114 V~nLp~~~t~~~L~~~F------------~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
+.|||+.+++++|+.+| ++||.|.+|+|+++++++++|||||.|.+.++|.+|+ .|||..|+||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777887777666 9999999999998888899999999999999999999 9999999999999
Q ss_pred Eeec
Q 027515 181 VSAK 184 (222)
Q Consensus 181 v~~a 184 (222)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=2.9e-15 Score=115.22 Aligned_cols=76 Identities=30% Similarity=0.539 Sum_probs=68.4
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhC----C-------CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCC
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSC----G-------TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHG 176 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~g 176 (222)
..++|||+|||+.+|+++|+.+|++| | .|.++++. +++|||||.|.+.++|.+||.+|+..|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHHHhCCcEecC
Confidence 46899999999999999999999999 6 67777664 56899999999999999999999999999
Q ss_pred eeeEEeeccCCC
Q 027515 177 RQLKVSAKRTNI 188 (222)
Q Consensus 177 r~i~v~~a~~~~ 188 (222)
++|+|.++....
T Consensus 78 ~~i~v~~~~~~~ 89 (172)
T 2g4b_A 78 QSLKIRRPHDYQ 89 (172)
T ss_dssp EECEEECCSSCC
T ss_pred ceeeecCCcccC
Confidence 999999987654
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=2.8e-15 Score=123.78 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=73.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-Hc-CCceeC---CeeeEEe
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LL-NETELH---GRQLKVS 182 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l-~g~~l~---gr~i~v~ 182 (222)
..++|||+|||+.+|+++|+.+|++||.|..|+|+.+.+|+++|||||.|.+.++|.+|| .| ++..+. +|+|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 467999999999999999999999999999999999999999999999999999999999 88 555555 9999999
Q ss_pred eccCC
Q 027515 183 AKRTN 187 (222)
Q Consensus 183 ~a~~~ 187 (222)
++...
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 98764
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=1.8e-15 Score=120.95 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=67.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCe--eEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCe----eeE
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTV--NRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGR----QLK 180 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i--~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr----~i~ 180 (222)
+.++|||+|||+.+|+++|+.+|++||.| .+|+++.++ +.++|||||+|.+.++|.+|| .|||..|.|+ ++.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 46789999999999999999999999999 899988766 556799999999999999999 9999999887 466
Q ss_pred Eeec
Q 027515 181 VSAK 184 (222)
Q Consensus 181 v~~a 184 (222)
|.+|
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 6554
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=2.9e-15 Score=107.31 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=69.4
Q ss_pred CCcEEEEecc--CCCCC--------HHHHHHHhhhCCCeeEEEEeeCC-C--CCcccEEEEEEcCHHHHHHHH-HcCCce
Q 027515 108 DSRSIYVGNV--DYACT--------PEEVQQHFQSCGTVNRVTILTDK-F--GQPKGFAYVEFVEIDAVQNAL-LLNETE 173 (222)
Q Consensus 108 ~~~~vfV~nL--p~~~t--------~~~L~~~F~~~G~i~~v~i~~~~-t--~~~kg~afV~f~~~~~a~~al-~l~g~~ 173 (222)
++++|.|.|+ |..+. .++|+..|++||.|.+|+|++++ + ++++|||||.|.+.++|.+|+ .|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4788999998 44443 36899999999999999999887 3 478999999999999999999 999999
Q ss_pred eCCeeeEEeeccC
Q 027515 174 LHGRQLKVSAKRT 186 (222)
Q Consensus 174 l~gr~i~v~~a~~ 186 (222)
++||+|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998753
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=6.8e-15 Score=119.13 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=71.0
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC-CeeeEEee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH-GRQLKVSA 183 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~-gr~i~v~~ 183 (222)
...++|||+|||+.+|+++|+.+|++|| .|..|+|+.. ++|||||+|.+.++|.+|| .|||..|+ |+.|+|.+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 3468999999999999999999999999 9999999642 4799999999999999999 89999999 99999999
Q ss_pred ccCC
Q 027515 184 KRTN 187 (222)
Q Consensus 184 a~~~ 187 (222)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9864
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=117.82 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=71.1
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC-CeeeEEee
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH-GRQLKVSA 183 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~-gr~i~v~~ 183 (222)
...++|||+|||+.+|+++|+.+|++|| .|..|+|+.+ ++|||||.|.+.++|.+|+ .|||..|+ |++|+|.+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 3478999999999999999999999999 9999999653 3799999999999999999 89999999 99999999
Q ss_pred ccCC
Q 027515 184 KRTN 187 (222)
Q Consensus 184 a~~~ 187 (222)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=1.5e-14 Score=105.61 Aligned_cols=79 Identities=24% Similarity=0.249 Sum_probs=69.1
Q ss_pred CCcEEEEeccCC--C---CCHHHHHHHhhhCCCeeEEEEeeCC-C----CCcccEEEEEEcCHHHHHHHH-HcCCceeCC
Q 027515 108 DSRSIYVGNVDY--A---CTPEEVQQHFQSCGTVNRVTILTDK-F----GQPKGFAYVEFVEIDAVQNAL-LLNETELHG 176 (222)
Q Consensus 108 ~~~~vfV~nLp~--~---~t~~~L~~~F~~~G~i~~v~i~~~~-t----~~~kg~afV~f~~~~~a~~al-~l~g~~l~g 176 (222)
++++|+|+|+-. . -.+++|+..|++||.|.+|+|+.++ + ++++||+||.|.+.++|.+|+ .|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478999999832 2 2468999999999999999999875 2 567899999999999999999 999999999
Q ss_pred eeeEEeeccC
Q 027515 177 RQLKVSAKRT 186 (222)
Q Consensus 177 r~i~v~~a~~ 186 (222)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.7e-14 Score=98.90 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=63.2
Q ss_pred CcEEEEeccC-------CCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeE
Q 027515 109 SRSIYVGNVD-------YACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLK 180 (222)
Q Consensus 109 ~~~vfV~nLp-------~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~ 180 (222)
.++|-|.-.. ..+|+++|+.+|++||.|..|+|+ ++++|||||+|.+.++|..|| .++ .+.|++|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEE
Confidence 4567676544 458999999999999999999998 478999999999999999999 644 46899999
Q ss_pred EeeccCCCC
Q 027515 181 VSAKRTNIP 189 (222)
Q Consensus 181 v~~a~~~~~ 189 (222)
|.+++.++.
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999987653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=2.2e-13 Score=116.54 Aligned_cols=73 Identities=18% Similarity=0.369 Sum_probs=63.6
Q ss_pred cCCcEEEEec--cCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCcee---CCe--e
Q 027515 107 VDSRSIYVGN--VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETEL---HGR--Q 178 (222)
Q Consensus 107 ~~~~~vfV~n--Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l---~gr--~ 178 (222)
.++++|||+| |++.+|+++|+.+|++||.|.+|.++. +||||||+|.+.++|++|| .|||..+ .|+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 4578999999 689999999999999999999987753 5899999999999999999 9999988 355 5
Q ss_pred eEEeec
Q 027515 179 LKVSAK 184 (222)
Q Consensus 179 i~v~~a 184 (222)
|.|.++
T Consensus 91 ly~~~~ 96 (345)
T 3tht_A 91 LYLNFV 96 (345)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 777766
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.41 E-value=1.1e-12 Score=95.05 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=64.7
Q ss_pred cCCcEEEEecc--CCCC--------CHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC
Q 027515 107 VDSRSIYVGNV--DYAC--------TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH 175 (222)
Q Consensus 107 ~~~~~vfV~nL--p~~~--------t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~ 175 (222)
..+++|.|.|+ |... ..++|+..|++||.|.+|.|+++. ++|||||.|.+.++|.+|+ .|||..++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34778999998 2221 234789999999999999986543 5899999999999999999 99999999
Q ss_pred CeeeEEeeccC
Q 027515 176 GRQLKVSAKRT 186 (222)
Q Consensus 176 gr~i~v~~a~~ 186 (222)
||.|+|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=3.7e-12 Score=87.60 Aligned_cols=74 Identities=26% Similarity=0.347 Sum_probs=63.8
Q ss_pred cCCcEEEEeccC----CCCCH----HHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCee
Q 027515 107 VDSRSIYVGNVD----YACTP----EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQ 178 (222)
Q Consensus 107 ~~~~~vfV~nLp----~~~t~----~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~ 178 (222)
++..||+|.-+| .+... .+|...|++||.|..++|+.+ .+||+|.+.++|.+||.|||..|+||.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHhcCCeEeCCeE
Confidence 456789999887 23444 579999999999999999864 489999999999999999999999999
Q ss_pred eEEeeccCC
Q 027515 179 LKVSAKRTN 187 (222)
Q Consensus 179 i~v~~a~~~ 187 (222)
|+|+++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999764
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.5e-11 Score=88.49 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=64.9
Q ss_pred cCCcEEEEeccCCC-CCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcC-HHHHHHHH-HcC--CceeCCeeeEE
Q 027515 107 VDSRSIYVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVE-IDAVQNAL-LLN--ETELHGRQLKV 181 (222)
Q Consensus 107 ~~~~~vfV~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~-~~~a~~al-~l~--g~~l~gr~i~v 181 (222)
..++.|||+||++. ++.++|+.+|++||.|.+|.++.+.+ +|||.|.+ ...|..|+ .|+ +..|+|..+++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 45789999999999 99999999999999999999987653 69999999 88999999 884 88999998888
Q ss_pred eec
Q 027515 182 SAK 184 (222)
Q Consensus 182 ~~a 184 (222)
...
T Consensus 91 evL 93 (121)
T 1owx_A 91 EVL 93 (121)
T ss_dssp EEC
T ss_pred EEC
Confidence 754
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=6.7e-11 Score=81.75 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=62.0
Q ss_pred cCCcEEEEeccCCC-----CCH----HHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCe
Q 027515 107 VDSRSIYVGNVDYA-----CTP----EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGR 177 (222)
Q Consensus 107 ~~~~~vfV~nLp~~-----~t~----~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr 177 (222)
++..||+|.-++.. ... .+|...|++||.|..++|+.++ +||+|.+.++|.+||.|+|..|+||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 45779999988743 222 4699999999999999999653 9999999999999999999999999
Q ss_pred eeEEeecc
Q 027515 178 QLKVSAKR 185 (222)
Q Consensus 178 ~i~v~~a~ 185 (222)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.03 E-value=6.1e-10 Score=89.38 Aligned_cols=65 Identities=26% Similarity=0.278 Sum_probs=58.9
Q ss_pred CCHHHHHHHhhhCCCeeEEEEeeCC-----CCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEeecc
Q 027515 121 CTPEEVQQHFQSCGTVNRVTILTDK-----FGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSAKR 185 (222)
Q Consensus 121 ~t~~~L~~~F~~~G~i~~v~i~~~~-----t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~a~ 185 (222)
-.+++|+..|++||.|.+|.|+++. +++++|++||+|.+.++|.+|+ .|||..++||.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4567899999999999999998554 3589999999999999999999 999999999999999875
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.71 E-value=8.1e-08 Score=67.76 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=65.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhC-----CCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEE
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSC-----GTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKV 181 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~-----G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v 181 (222)
..++|-+-|||..++...|+.++.+| |.|..|.++.+ -+-|+|+|.+...|.+|. +|+|..|.||+|+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 36789999999999999999999999 99999999865 478999999999999998 99999999999999
Q ss_pred eec
Q 027515 182 SAK 184 (222)
Q Consensus 182 ~~a 184 (222)
...
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 754
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=5.7e-05 Score=52.71 Aligned_cols=81 Identities=21% Similarity=0.213 Sum_probs=66.7
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhh-----CCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCeeeEEe
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQS-----CGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVS 182 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~-----~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr~i~v~ 182 (222)
...+|.|.|||..+..+-|.-+|.. -|.|..|... .+.|+|+|.+...|++.|....+.|+|..|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------~~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-------GCGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-------TTEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-------CCcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 3678999999999999999999986 2588888765 278999999999999999877899999999998
Q ss_pred eccCCCCCCCCCC
Q 027515 183 AKRTNIPGMKQFR 195 (222)
Q Consensus 183 ~a~~~~~~~~~~~ 195 (222)
...++.+.+-..+
T Consensus 80 P~~~~~~~r~ll~ 92 (104)
T 2dhx_A 80 PAPPRAPARLLLQ 92 (104)
T ss_dssp ECCCCCCCCCCCC
T ss_pred cCCCCCcceEeee
Confidence 8766654444333
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.93 E-value=2.9e-05 Score=54.36 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=61.6
Q ss_pred CcEEEEeccCCCC-CH----HHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEe
Q 027515 109 SRSIYVGNVDYAC-TP----EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVS 182 (222)
Q Consensus 109 ~~~vfV~nLp~~~-t~----~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~ 182 (222)
.++|+|.||+..+ +. ..++.+|..|+.+...... +|-.-..|.|.+.++|.+|- .|++..++|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-----kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-----KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-----TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-----CcceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 5689999998865 22 4678999999988876665 34456799999999999998 999999999999999
Q ss_pred eccCC
Q 027515 183 AKRTN 187 (222)
Q Consensus 183 ~a~~~ 187 (222)
++.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99844
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.69 E-value=0.00029 Score=48.28 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=55.3
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-CC--CcccEEEEEEcCHHHHHHHH-HcCCceeC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FG--QPKGFAYVEFVEIDAVQNAL-LLNETELH 175 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t~--~~kg~afV~f~~~~~a~~al-~l~g~~l~ 175 (222)
.+|.|++||+.+|++++...++.+..+.....+..+ +. ..-.-|||.|.+.+++.... .++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 468999999999999999999999888777777665 32 33467999999999999988 89998873
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00076 Score=48.39 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=59.4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCC-eeeEEeecc
Q 027515 107 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHG-RQLKVSAKR 185 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~g-r~i~v~~a~ 185 (222)
...+.|.|-+.|+..+ ..|..+|++||.|...... ....+-.|.|.++.+|++||..||..|+| -.|-|.+..
T Consensus 22 ~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 3466788889999864 5677899999999987762 24579999999999999999999999985 667777753
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.19 E-value=0.002 Score=44.40 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=43.1
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-Hc
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LL 169 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l 169 (222)
.+.++| ++|......+|..+|++||.| .|+-+.+ -.|||.|.+++.|..|+ .+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhc
Confidence 455666 999999999999999999944 3444433 48999999999999998 55
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.03 E-value=0.0015 Score=47.61 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=55.4
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeE-EEEee--------CC-CC-----CcccEEEEEEcCHHHHHHHHHcCCcee
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNR-VTILT--------DK-FG-----QPKGFAYVEFVEIDAVQNALLLNETEL 174 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~--------~~-t~-----~~kg~afV~f~~~~~a~~al~l~g~~l 174 (222)
..|.|-+.|+..+.. +...|++||.|.. +.+.. .+ .. ...++..|+|.++.+|.+||..||..|
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 456777888877654 6678999998865 21110 00 00 146788999999999999999999999
Q ss_pred CCeeeEEeecc
Q 027515 175 HGRQLKVSAKR 185 (222)
Q Consensus 175 ~gr~i~v~~a~ 185 (222)
+|..|-|.+..
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988888764
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.99 E-value=0.0014 Score=45.26 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=42.8
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcC
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLN 170 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~ 170 (222)
+.++| ++|......+|..+|++||. ..|+-+.+ -.|||.|.+++.|..|+ .+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 34566 99999999999999999993 34555543 48999999999999999 554
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.77 E-value=0.00086 Score=59.18 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=45.0
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELH 175 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~ 175 (222)
.++|||. .|..+++.+|..+|++||+|.++.+-.++ .-||.|+|.+.+++..++...++.+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSSCCCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhccCCCcc
Confidence 5789997 79999999999999999999998876432 36999999999999988744444333
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.70 E-value=0.0023 Score=44.13 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=49.5
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCC-C-C-CcccEEEEEEcCHHHHHHHH-HcCCcee
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-F-G-QPKGFAYVEFVEIDAVQNAL-LLNETEL 174 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-t-~-~~kg~afV~f~~~~~a~~al-~l~g~~l 174 (222)
+-+|.|++||+.+|++++.+.++.+-.+.....+..+ + + ..-..|||.|.+.+++.... .++|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 4569999999999999988888776554443443333 2 1 22356899999999999998 8999877
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.84 E-value=0.0071 Score=44.98 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=27.4
Q ss_pred EEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCc
Q 027515 138 RVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNET 172 (222)
Q Consensus 138 ~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~ 172 (222)
.++|+++.. +++|||||+|.+.+.|++|+ .+++.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 456666654 68999999999999999999 76653
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.67 E-value=0.0026 Score=47.14 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=36.0
Q ss_pred CCcccEEEEEEcCHHHHHHHH-Hc-CCceeCCeeeEEeeccCC
Q 027515 147 GQPKGFAYVEFVEIDAVQNAL-LL-NETELHGRQLKVSAKRTN 187 (222)
Q Consensus 147 ~~~kg~afV~f~~~~~a~~al-~l-~g~~l~gr~i~v~~a~~~ 187 (222)
...+|+++|+|.+.+.|++|+ .+ |+..|.| .|++.++..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 367899999999999999999 89 9999999 9999988653
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.47 E-value=1.4 Score=39.14 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=43.1
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcC
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLN 170 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~ 170 (222)
...++|+ +|..+...+|..+|+.||.| .|+.+ +...|||.|.+.+.|..++ .++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi------ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI------DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC------SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE------cCCeEEEEECCHHHHHHHHHHHH
Confidence 4466666 89999999999999999953 45544 2457999999999999999 664
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=85.79 E-value=1.8 Score=27.69 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=42.0
Q ss_pred EEEEec-cCCCCCHHHHHHHhhhCC-----CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeCCeeeEEee
Q 027515 111 SIYVGN-VDYACTPEEVQQHFQSCG-----TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELHGRQLKVSA 183 (222)
Q Consensus 111 ~vfV~n-Lp~~~t~~~L~~~F~~~G-----~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~gr~i~v~~ 183 (222)
++||.. --..++..+|..++..-+ .|-.|.|. -.|.||.-... .+..++ .|++..+.|+.++|..
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEE
Confidence 466642 133467778888887544 45667764 45889888754 466777 8999999999999987
Q ss_pred cc
Q 027515 184 KR 185 (222)
Q Consensus 184 a~ 185 (222)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=78.59 E-value=0.59 Score=32.47 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred cCCcEEEEeccCCCCCHHH
Q 027515 107 VDSRSIYVGNVDYACTPEE 125 (222)
Q Consensus 107 ~~~~~vfV~nLp~~~t~~~ 125 (222)
....+|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456799999999999763
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=76.23 E-value=12 Score=28.25 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=41.5
Q ss_pred cEEEEeccCC-C--------CCHHHHHHHh--hhCCCeeEEEEeeCCCCCcccEEEEEEcC-HHHHHHHHHcC
Q 027515 110 RSIYVGNVDY-A--------CTPEEVQQHF--QSCGTVNRVTILTDKFGQPKGFAYVEFVE-IDAVQNALLLN 170 (222)
Q Consensus 110 ~~vfV~nLp~-~--------~t~~~L~~~F--~~~G~i~~v~i~~~~t~~~kg~afV~f~~-~~~a~~al~l~ 170 (222)
-++.|-|+|. . .....|+..| +.|.++. |+.+..+.| +.|+|.|.|.+ -.-...|+.|.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHHHH
Confidence 4677888887 2 3457899977 8998865 555555543 68999999984 55666677554
No 225
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=49.79 E-value=29 Score=29.55 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=40.7
Q ss_pred EEEEeccCCCCC----HHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCe
Q 027515 111 SIYVGNVDYACT----PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGR 177 (222)
Q Consensus 111 ~vfV~nLp~~~t----~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr 177 (222)
.-+||||..-.. ...+.++..+||+|..+++- +.-+|...+++.++.++.-++..+.+|
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG--------TKTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET--------TEEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC--------CCCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 346899865322 34577778899999888762 355778889999999884444444444
No 226
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=46.57 E-value=25 Score=28.28 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=26.1
Q ss_pred CcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEe
Q 027515 109 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142 (222)
Q Consensus 109 ~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 142 (222)
...+.|+|||+.++..-|..++.. ..+..+.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 356789999999999999999987 666555443
No 227
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=42.51 E-value=13 Score=30.14 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=25.8
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEe
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 142 (222)
..+.|+|||+.++..-|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999865556555544
No 228
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=40.68 E-value=17 Score=30.79 Aligned_cols=57 Identities=23% Similarity=0.192 Sum_probs=36.9
Q ss_pred EEeccCCC---CCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCceeCCe
Q 027515 113 YVGNVDYA---CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETELHGR 177 (222)
Q Consensus 113 fV~nLp~~---~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l~gr 177 (222)
|||||..- -....+.++..+||+|..+++. +.-+|...+++.++.++.-++..+.+|
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~i~~vl~~~~~~f~~r 79 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA--------WTPVVVLNGLAAVREALVTHGEDTADR 79 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET--------TEEEEEEEHHHHHHHHHTTTGGGSCBC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC--------CeeEEEECCHHHHHHHHHhCChhhcCC
Confidence 57776432 2344577888899999887762 334566778888888874454444433
No 229
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=40.64 E-value=3 Score=36.26 Aligned_cols=15 Identities=7% Similarity=0.126 Sum_probs=12.7
Q ss_pred HHHHhhhCCCeeEEE
Q 027515 126 VQQHFQSCGTVNRVT 140 (222)
Q Consensus 126 L~~~F~~~G~i~~v~ 140 (222)
|..+|.++++|..|.
T Consensus 9 L~~lF~p~pPl~~~~ 23 (437)
T 3pgw_S 9 LLALFAPRDPIPYLP 23 (437)
T ss_pred HHHhcCCCCCCcCCC
Confidence 778999999998873
No 230
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=40.55 E-value=79 Score=21.05 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=52.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-H-cCC------ceeCCeee
Q 027515 108 DSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-L-LNE------TELHGRQL 179 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~-l~g------~~l~gr~i 179 (222)
..+.|-|-|+|..+-..++--.....|.--.|..+ -|-|.+.|.+......|| . ||. +.|.|+.+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 46678888999999988887777777866666654 588999999999888888 4 432 35567776
Q ss_pred EEee
Q 027515 180 KVSA 183 (222)
Q Consensus 180 ~v~~ 183 (222)
.|-.
T Consensus 84 dvis 87 (129)
T 4eyt_A 84 DVIS 87 (129)
T ss_dssp EEEC
T ss_pred eeee
Confidence 6643
No 231
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=38.83 E-value=1.4e+02 Score=23.44 Aligned_cols=76 Identities=11% Similarity=0.244 Sum_probs=42.3
Q ss_pred CCcEEEEeccCCCCC--HHHHHHHhh-----hCC--------CeeEEEEeeCC-C---CCcccEEEEEEcCHHHHHH---
Q 027515 108 DSRSIYVGNVDYACT--PEEVQQHFQ-----SCG--------TVNRVTILTDK-F---GQPKGFAYVEFVEIDAVQN--- 165 (222)
Q Consensus 108 ~~~~vfV~nLp~~~t--~~~L~~~F~-----~~G--------~i~~v~i~~~~-t---~~~kg~afV~f~~~~~a~~--- 165 (222)
..+.|.|.+||.... ..-+..+|. .|. .|..+.-.... + ..++ .-+|.|....+-++
T Consensus 51 Rr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR-~IIvK~~~~~~KErILk 129 (233)
T 2yko_A 51 KRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPR-HIIVRFTKVEMKEKMLR 129 (233)
T ss_dssp TTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCC-CEEEEESSHHHHHHHHH
T ss_pred cccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCC-eEEEEecccccHHHHHH
Confidence 356899999999876 444444443 232 23333222111 1 1223 35666665554444
Q ss_pred HH-HcCCceeCCeeeEEeec
Q 027515 166 AL-LLNETELHGRQLKVSAK 184 (222)
Q Consensus 166 al-~l~g~~l~gr~i~v~~a 184 (222)
|. .....++.|.+|++..-
T Consensus 130 aaR~k~~vtykG~pIrlsaD 149 (233)
T 2yko_A 130 AAREKGRVTLKGKPIRLTVD 149 (233)
T ss_dssp HHHTTSCEEETTEEEEEEEC
T ss_pred HHHHhcccccCCCceEEeCC
Confidence 44 44578899999998754
No 232
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=34.14 E-value=26 Score=32.02 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=41.2
Q ss_pred ccCCCCCHHHHHHHhh----hCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH
Q 027515 116 NVDYACTPEEVQQHFQ----SCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL 167 (222)
Q Consensus 116 nLp~~~t~~~L~~~F~----~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al 167 (222)
.++.+.+--+|..+|- .+|-|+.+.|...+....+.++++.|.+.++|..++
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av 405 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACL 405 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhH
Confidence 4566666668888883 678999988877665667788999999999988887
No 233
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=33.57 E-value=34 Score=27.05 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=23.5
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEE
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTI 141 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i 141 (222)
..+.|+|||+.++..-|..++.....+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 35889999999999988888875434444433
No 234
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=32.34 E-value=35 Score=26.84 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=24.9
Q ss_pred cEEEEeccCCCCCHHHHHHHhhhCCCeeEEEEe
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 142 (222)
..+.|+|||+.++..-|..++.....+..+.++
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 347899999999999999998865445444443
No 235
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=31.09 E-value=18 Score=28.83 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=25.1
Q ss_pred EEEEeccCCCCCHHHHHHHhhhCCCeeEEEEe
Q 027515 111 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 142 (222)
Q Consensus 111 ~vfV~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 142 (222)
...|+|||+.++..-|..++.....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 34799999999999999999876666555444
No 236
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=29.31 E-value=44 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=19.5
Q ss_pred cEEEEeccCCCCCHHHHHHHhhh
Q 027515 110 RSIYVGNVDYACTPEEVQQHFQS 132 (222)
Q Consensus 110 ~~vfV~nLp~~~t~~~L~~~F~~ 132 (222)
...+|+|||++++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999988888864
No 237
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=28.44 E-value=52 Score=27.67 Aligned_cols=52 Identities=23% Similarity=0.214 Sum_probs=36.4
Q ss_pred EEeccCCC---CCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCc
Q 027515 113 YVGNVDYA---CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNET 172 (222)
Q Consensus 113 fV~nLp~~---~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~ 172 (222)
+||||..- -....+..+..+||.|..+++ -+.-+|...+.+.+..++.-+..
T Consensus 20 liG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~--------g~~~~vvv~~~~~v~~il~~~~~ 74 (476)
T 3e6i_A 20 IIGNLFQLELKNIPKSFTRLAQRFGPVFTLYV--------GSQRMVVMHGYKAVKEALLDYKD 74 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEE--------TTEEEEEECSHHHHHHHHHTSTT
T ss_pred cccChhhhccccHhHHHHHHHHHhCCEEEEEE--------CCccEEEECCHHHHHHHHhcchH
Confidence 46776432 224457788889999987776 24567888999999998854433
No 238
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=27.82 E-value=56 Score=20.09 Aligned_cols=23 Identities=9% Similarity=0.466 Sum_probs=18.3
Q ss_pred eEEEEeeCCCCCcccEEEEEEcC
Q 027515 137 NRVTILTDKFGQPKGFAYVEFVE 159 (222)
Q Consensus 137 ~~v~i~~~~t~~~kg~afV~f~~ 159 (222)
..++|+.++...+.|+++|.|.+
T Consensus 20 R~arlllnrRps~~G~~wiKyED 42 (62)
T 1igq_A 20 RPARLILNRRPPAEGYAWLKYED 42 (62)
T ss_dssp EEEEECTTBCCSSTTEEEEEETT
T ss_pred hhhhhhhccCCCcCceEEEEEec
Confidence 34778887766789999999975
No 239
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.49 E-value=9.9 Score=27.81 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=16.0
Q ss_pred HHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEc
Q 027515 125 EVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 158 (222)
Q Consensus 125 ~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~ 158 (222)
++..+|...|.|+... ..+||+||...
T Consensus 3 ~~~~l~~~~G~Vkwfn-------~~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFN-------VRMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEEE-------TTTTEEEEEEE
T ss_pred cccccccceeEEEEEE-------CCCCeeEEeeC
Confidence 3445566667665443 34899999865
No 240
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=25.27 E-value=82 Score=21.45 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=27.1
Q ss_pred CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCce
Q 027515 135 TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETE 173 (222)
Q Consensus 135 ~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~ 173 (222)
.|.+|..+ ...+||-||+=.+..++..|| .+.+..
T Consensus 40 ~I~Si~~~----~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAP----EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEEC----TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEec----CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 57777654 235999999999999999999 665543
No 241
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=24.36 E-value=1.2e+02 Score=20.55 Aligned_cols=48 Identities=10% Similarity=0.275 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHhhh-CC---CeeEEEEeeCC--CCCcccEEEEEEcCHHHHHHHH
Q 027515 119 YACTPEEVQQHFQS-CG---TVNRVTILTDK--FGQPKGFAYVEFVEIDAVQNAL 167 (222)
Q Consensus 119 ~~~t~~~L~~~F~~-~G---~i~~v~i~~~~--t~~~kg~afV~f~~~~~a~~al 167 (222)
...+..+|+..+++ |+ .+..|.=++.. .|++.|||.| |.+.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56778888888874 55 22333323333 3677888865 67777766654
No 242
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=24.36 E-value=1e+02 Score=26.06 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=31.7
Q ss_pred EEEeccCCC--CCHHHHHHHhhhCCCeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHcCCcee
Q 027515 112 IYVGNVDYA--CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNETEL 174 (222)
Q Consensus 112 vfV~nLp~~--~t~~~L~~~F~~~G~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al~l~g~~l 174 (222)
-+||||..- -....+..+..+||.|..+++ -+.-+|...+++.+..++.-+...+
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~--------g~~~~vvv~dp~~i~~il~~~~~~f 74 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRL--------GSCPIVVLNGERAIHQALVQQGSAF 74 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEE--------TTEEEEEECSHHHHHHHHTTTTTTS
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEE--------CCccEEEECCHHHHHHHHHhCcHhh
Confidence 356766432 123457778889999987776 2456788889999888884343333
No 243
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=23.09 E-value=1.6e+02 Score=20.10 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHhhh-CCC---eeEEEEeeCC--CCCcccEEEEEEcCHHHHHHH
Q 027515 119 YACTPEEVQQHFQS-CGT---VNRVTILTDK--FGQPKGFAYVEFVEIDAVQNA 166 (222)
Q Consensus 119 ~~~t~~~L~~~F~~-~G~---i~~v~i~~~~--t~~~kg~afV~f~~~~~a~~a 166 (222)
...+..+|+..+++ |+. +..|.=++.. .|++.|||.| |.+.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677888887774 552 2233333333 3677888866 6777777654
No 244
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=22.49 E-value=1.4e+02 Score=20.25 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhhh-CC---CeeEEEEeeCC--CCCcccEEEEEEcCHHHHHH
Q 027515 119 YACTPEEVQQHFQS-CG---TVNRVTILTDK--FGQPKGFAYVEFVEIDAVQN 165 (222)
Q Consensus 119 ~~~t~~~L~~~F~~-~G---~i~~v~i~~~~--t~~~kg~afV~f~~~~~a~~ 165 (222)
...+..+|+..+++ |+ .+..|.=++.. .|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788888888874 44 22333323333 3677888866 677776655
No 245
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=21.05 E-value=2.4e+02 Score=21.45 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=28.2
Q ss_pred CeeEEEEeeCCCCCcccEEEEEEcCHHHHHHHH-HcCCceeC
Q 027515 135 TVNRVTILTDKFGQPKGFAYVEFVEIDAVQNAL-LLNETELH 175 (222)
Q Consensus 135 ~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~al-~l~g~~l~ 175 (222)
.|.+|..+ ..-+||-||+=.+...+..|| .+.+....
T Consensus 138 ~I~Si~~~----d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 138 KILSIFQR----DNYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp CCCEEECC----TTSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred cEEEEEec----CCCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 36666543 235899999999999999999 78776543
No 246
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.75 E-value=1.8e+02 Score=18.91 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=36.0
Q ss_pred EEEeccCCCCCHHHHHHHhhh-CC-CeeEEEEeeCCCCCcccEEEEEEcCHHHHHH
Q 027515 112 IYVGNVDYACTPEEVQQHFQS-CG-TVNRVTILTDKFGQPKGFAYVEFVEIDAVQN 165 (222)
Q Consensus 112 vfV~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~t~~~kg~afV~f~~~~~a~~ 165 (222)
.|+-.+...+|-.+++..+.. |+ .|..|+.+..+.| .--|||.+..-.+|..
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~--~KKA~V~L~~~~~a~d 78 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG--EKKAYVKLKPEYSASE 78 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS--CEEEEEEECTTSCHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC--ceEEEEEcCCCCcHHH
Confidence 455567889999999999986 66 6777776654422 2358999876554433
No 247
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.32 E-value=1.3e+02 Score=19.72 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=29.8
Q ss_pred CeeEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHcCCcee--CCeeeEEeecc
Q 027515 135 TVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETEL--HGRQLKVSAKR 185 (222)
Q Consensus 135 ~i~~v~i~~~~-t~~~kg~afV~f~~~~~a~~al~l~g~~l--~gr~i~v~~a~ 185 (222)
.|+.|+|..-. .|+-++||=|+|.+ ++.+++..| +.+-|.|....
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd------~fvI~~ikVieg~~GlFVaMPs 52 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE------AFVIHDLRVIEGNSGLFVAMPS 52 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT------TEEEEEEEEEEETTEEEEECCE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC------EEEEeeEEEEECCCceEEECCC
Confidence 57888887766 68889999999975 334555444 22336665543
Done!