Query 027516
Match_columns 222
No_of_seqs 181 out of 1732
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 1.4E-64 3E-69 411.1 20.4 221 2-222 2-222 (303)
2 KOG0373 Serine/threonine speci 100.0 9.6E-60 2.1E-64 377.9 17.8 222 1-222 4-225 (306)
3 PTZ00239 serine/threonine prot 100.0 2.6E-55 5.6E-60 377.8 22.0 222 1-222 1-222 (303)
4 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 4.6E-55 9.9E-60 374.1 21.2 221 2-222 1-221 (285)
5 cd07420 MPP_RdgC Drosophila me 100.0 2.5E-54 5.5E-59 373.5 22.1 220 2-222 6-260 (321)
6 cd07416 MPP_PP2B PP2B, metallo 100.0 4.5E-53 9.7E-58 365.1 22.7 220 2-222 2-229 (305)
7 PTZ00480 serine/threonine-prot 100.0 4.5E-53 9.8E-58 365.2 20.8 220 2-222 10-238 (320)
8 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 2.7E-52 5.8E-57 358.3 19.7 220 2-222 1-229 (293)
9 PTZ00244 serine/threonine-prot 100.0 4.7E-52 1E-56 356.5 20.6 219 3-222 4-231 (294)
10 cd07417 MPP_PP5_C PP5, C-termi 100.0 4.3E-52 9.4E-57 359.9 20.3 220 2-222 15-240 (316)
11 KOG0371 Serine/threonine prote 100.0 2E-52 4.4E-57 342.1 15.4 220 2-221 19-238 (319)
12 KOG0374 Serine/threonine speci 100.0 2.4E-52 5.2E-57 361.9 16.8 208 15-222 31-240 (331)
13 KOG0375 Serine-threonine phosp 100.0 4.7E-52 1E-56 353.3 15.5 219 3-222 48-274 (517)
14 smart00156 PP2Ac Protein phosp 100.0 8.4E-51 1.8E-55 346.2 20.0 206 16-222 1-207 (271)
15 cd07418 MPP_PP7 PP7, metalloph 100.0 2.5E-50 5.4E-55 353.7 21.6 221 2-222 11-280 (377)
16 cd07419 MPP_Bsu1_C Arabidopsis 100.0 6.2E-48 1.3E-52 334.3 19.9 210 13-222 18-249 (311)
17 KOG0377 Protein serine/threoni 100.0 4.8E-40 1E-44 285.8 10.7 220 2-222 120-369 (631)
18 KOG0376 Serine-threonine phosp 100.0 1.9E-33 4.1E-38 248.6 8.3 219 3-222 170-394 (476)
19 cd00144 MPP_PPP_family phospho 100.0 2.5E-30 5.3E-35 214.1 13.7 168 46-220 1-193 (225)
20 PRK13625 bis(5'-nucleosyl)-tet 100.0 4.5E-30 9.8E-35 216.2 14.2 161 43-219 1-196 (245)
21 PHA02239 putative protein phos 100.0 2.2E-28 4.8E-33 204.4 13.1 156 43-219 1-202 (235)
22 cd07413 MPP_PA3087 Pseudomonas 100.0 4.3E-28 9.4E-33 201.3 13.4 116 46-164 2-143 (222)
23 cd07423 MPP_PrpE Bacillus subt 100.0 5.5E-28 1.2E-32 202.2 12.2 123 43-167 1-143 (234)
24 PRK00166 apaH diadenosine tetr 100.0 6.7E-28 1.5E-32 205.6 12.3 123 43-169 1-129 (275)
25 cd07421 MPP_Rhilphs Rhilph pho 99.9 2E-27 4.3E-32 202.0 13.7 165 43-216 2-263 (304)
26 cd07422 MPP_ApaH Escherichia c 99.9 3.1E-27 6.6E-32 199.6 12.5 121 45-169 1-127 (257)
27 PRK11439 pphA serine/threonine 99.9 1.8E-27 3.8E-32 197.2 10.8 160 42-219 16-191 (218)
28 TIGR00668 apaH bis(5'-nucleosy 99.9 2E-27 4.4E-32 201.5 11.2 127 43-174 1-133 (279)
29 cd07424 MPP_PrpA_PrpB PrpA and 99.9 1.2E-25 2.7E-30 184.6 13.6 165 43-219 1-180 (207)
30 PRK09968 serine/threonine-spec 99.9 7.4E-24 1.6E-28 175.5 12.4 160 42-219 14-191 (218)
31 cd07425 MPP_Shelphs Shewanella 99.9 5E-23 1.1E-27 169.4 10.6 121 46-167 1-141 (208)
32 PF00149 Metallophos: Calcineu 99.3 1.4E-11 3E-16 94.4 8.6 76 43-118 1-82 (200)
33 PRK09453 phosphodiesterase; Pr 99.3 8.3E-12 1.8E-16 100.4 6.2 69 43-115 1-77 (182)
34 cd00841 MPP_YfcE Escherichia c 99.2 1E-10 2.2E-15 91.3 8.2 86 44-167 1-89 (155)
35 TIGR00040 yfcE phosphoesterase 99.2 1.2E-10 2.5E-15 91.6 7.9 63 43-114 1-64 (158)
36 cd07397 MPP_DevT Myxococcus xa 99.1 2.5E-10 5.4E-15 95.4 7.9 113 44-166 2-160 (238)
37 PF12850 Metallophos_2: Calcin 99.1 3.5E-10 7.6E-15 87.7 7.1 61 43-115 1-61 (156)
38 cd07388 MPP_Tt1561 Thermus the 99.0 7.7E-10 1.7E-14 92.0 6.7 72 42-114 4-75 (224)
39 cd07379 MPP_239FB Homo sapiens 98.8 3.7E-09 8E-14 80.8 5.0 61 44-114 1-63 (135)
40 cd07392 MPP_PAE1087 Pyrobaculu 98.7 1.8E-08 3.8E-13 80.4 6.0 66 45-116 1-67 (188)
41 PRK11340 phosphodiesterase Yae 98.7 2.8E-08 6E-13 84.9 7.0 71 42-114 49-125 (271)
42 cd00838 MPP_superfamily metall 98.7 8.8E-08 1.9E-12 70.8 8.0 67 46-112 1-69 (131)
43 cd07385 MPP_YkuE_C Bacillus su 98.7 3.2E-08 6.9E-13 81.5 5.2 71 43-115 2-77 (223)
44 cd07404 MPP_MS158 Microscilla 98.6 2.8E-08 6.1E-13 78.4 3.4 67 45-114 1-68 (166)
45 cd07394 MPP_Vps29 Homo sapiens 98.6 2.3E-07 4.9E-12 74.6 8.5 59 44-114 1-65 (178)
46 PRK05340 UDP-2,3-diacylglucosa 98.5 1.7E-07 3.6E-12 78.7 6.0 71 43-115 1-84 (241)
47 TIGR03729 acc_ester putative p 98.4 4.4E-07 9.5E-12 76.0 6.0 68 44-114 1-74 (239)
48 TIGR00619 sbcd exonuclease Sbc 98.4 9.2E-07 2E-11 74.9 6.7 72 43-114 1-88 (253)
49 cd07396 MPP_Nbla03831 Homo sap 98.3 1.5E-06 3.3E-11 74.0 6.9 72 44-115 2-87 (267)
50 PRK04036 DNA polymerase II sma 98.3 2.8E-06 6E-11 78.7 8.1 73 41-115 242-344 (504)
51 PHA02546 47 endonuclease subun 98.2 2.2E-06 4.8E-11 75.6 6.4 72 43-114 1-89 (340)
52 TIGR01854 lipid_A_lpxH UDP-2,3 98.2 3.1E-06 6.7E-11 70.6 6.0 68 45-114 1-81 (231)
53 cd07402 MPP_GpdQ Enterobacter 98.2 5.1E-06 1.1E-10 69.1 7.1 67 44-114 1-83 (240)
54 cd07403 MPP_TTHA0053 Thermus t 98.2 3.6E-06 7.8E-11 64.0 5.4 56 46-112 1-56 (129)
55 cd00840 MPP_Mre11_N Mre11 nucl 98.1 4.6E-06 1E-10 68.2 5.8 72 44-116 1-91 (223)
56 cd07390 MPP_AQ1575 Aquifex aeo 98.1 5.7E-06 1.2E-10 65.7 5.8 67 45-116 1-84 (168)
57 cd07400 MPP_YydB Bacillus subt 98.1 8E-06 1.7E-10 62.6 6.1 68 45-113 1-80 (144)
58 PRK11148 cyclic 3',5'-adenosin 98.1 8E-06 1.7E-10 69.8 6.2 71 42-114 14-98 (275)
59 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.0 1E-05 2.2E-10 69.0 6.4 70 45-114 1-86 (262)
60 cd08165 MPP_MPPE1 human MPPE1 98.0 1.1E-05 2.4E-10 63.4 5.3 50 66-115 35-90 (156)
61 cd07393 MPP_DR1119 Deinococcus 98.0 1.8E-05 3.9E-10 66.1 6.3 65 45-113 1-83 (232)
62 cd07399 MPP_YvnB Bacillus subt 98.0 1.6E-05 3.5E-10 65.6 5.9 70 44-114 2-82 (214)
63 TIGR00583 mre11 DNA repair pro 98.0 2.1E-05 4.7E-10 70.8 7.1 54 42-95 3-68 (405)
64 COG0622 Predicted phosphoester 97.9 2.6E-05 5.6E-10 62.3 6.6 65 43-115 2-66 (172)
65 cd07391 MPP_PF1019 Pyrococcus 97.9 2E-05 4.3E-10 62.8 5.9 57 58-115 30-89 (172)
66 TIGR00024 SbcD_rel_arch putati 97.9 2.4E-05 5.3E-10 65.2 6.7 69 43-115 15-103 (225)
67 cd07383 MPP_Dcr2 Saccharomyces 97.9 2.6E-05 5.6E-10 63.4 6.6 70 43-112 3-87 (199)
68 COG1409 Icc Predicted phosphoh 97.9 3.7E-05 8E-10 65.2 7.3 73 43-117 1-81 (301)
69 PRK10966 exonuclease subunit S 97.9 2.5E-05 5.4E-10 70.6 5.8 71 43-114 1-87 (407)
70 COG1408 Predicted phosphohydro 97.8 4.1E-05 8.9E-10 65.9 5.6 73 42-116 44-120 (284)
71 cd07401 MPP_TMEM62_N Homo sapi 97.8 5.9E-05 1.3E-09 63.9 6.1 70 45-114 2-89 (256)
72 cd07386 MPP_DNA_pol_II_small_a 97.7 7.3E-05 1.6E-09 62.7 6.5 67 46-114 2-94 (243)
73 cd07395 MPP_CSTP1 Homo sapiens 97.7 6.8E-05 1.5E-09 63.4 5.9 69 44-114 6-99 (262)
74 cd07398 MPP_YbbF-LpxH Escheric 97.7 8.2E-05 1.8E-09 60.8 6.2 69 46-115 1-83 (217)
75 COG2908 Uncharacterized protei 97.7 0.00035 7.6E-09 58.1 9.4 99 46-163 1-115 (237)
76 COG0639 ApaH Diadenosine tetra 97.7 3E-05 6.5E-10 58.6 2.9 101 118-219 5-114 (155)
77 cd00839 MPP_PAPs purple acid p 97.7 3.7E-05 8.1E-10 65.9 3.7 70 42-115 4-82 (294)
78 COG2129 Predicted phosphoester 97.6 0.00017 3.7E-09 59.5 6.8 74 42-116 3-79 (226)
79 cd08166 MPP_Cdc1_like_1 unchar 97.5 0.00025 5.4E-09 57.8 5.6 48 67-114 40-93 (195)
80 COG4186 Predicted phosphoester 97.5 0.0003 6.4E-09 54.9 5.6 67 44-114 5-86 (186)
81 COG0420 SbcD DNA repair exonuc 97.4 0.00035 7.7E-09 62.6 6.9 73 43-115 1-89 (390)
82 cd07384 MPP_Cdc1_like Saccharo 97.4 0.00038 8.3E-09 55.5 6.1 52 64-115 40-101 (171)
83 cd07380 MPP_CWF19_N Schizosacc 97.4 0.0004 8.7E-09 54.3 5.8 66 46-112 1-68 (150)
84 PF08321 PPP5: PPP5 TPR repeat 97.3 0.00033 7.1E-09 50.5 4.5 39 3-41 57-95 (95)
85 cd00845 MPP_UshA_N_like Escher 97.3 0.00028 6.1E-09 59.2 4.5 66 44-114 2-82 (252)
86 PF14582 Metallophos_3: Metall 97.2 0.00023 4.9E-09 58.9 3.0 71 43-114 6-102 (255)
87 PLN02533 probable purple acid 96.9 0.00088 1.9E-08 61.0 4.2 70 42-114 139-211 (427)
88 cd07410 MPP_CpdB_N Escherichia 96.9 0.00095 2.1E-08 57.0 3.9 66 44-114 2-95 (277)
89 cd07378 MPP_ACP5 Homo sapiens 96.6 0.0045 9.8E-08 52.5 5.5 69 44-114 2-83 (277)
90 cd08163 MPP_Cdc1 Saccharomyces 96.5 0.0021 4.4E-08 54.7 2.9 45 69-113 45-96 (257)
91 COG1407 Predicted ICC-like pho 96.4 0.0071 1.5E-07 50.5 5.8 72 41-115 18-111 (235)
92 cd08164 MPP_Ted1 Saccharomyces 96.4 0.0094 2E-07 48.5 6.0 65 50-114 24-111 (193)
93 KOG0376 Serine-threonine phosp 96.3 0.0015 3.3E-08 59.2 1.2 117 12-129 11-131 (476)
94 cd07408 MPP_SA0022_N Staphyloc 96.3 0.0053 1.1E-07 52.0 4.3 65 44-113 2-81 (257)
95 COG1768 Predicted phosphohydro 96.0 0.01 2.2E-07 47.6 4.5 44 68-115 42-87 (230)
96 PF06874 FBPase_2: Firmicute f 96.0 0.0092 2E-07 56.0 4.9 45 69-118 184-228 (640)
97 cd07412 MPP_YhcR_N Bacillus su 95.8 0.013 2.9E-07 50.5 4.5 65 44-113 2-87 (288)
98 cd07411 MPP_SoxB_N Thermus the 95.6 0.014 3.1E-07 49.5 4.1 65 44-114 2-95 (264)
99 cd00842 MPP_ASMase acid sphing 95.3 0.028 6E-07 48.4 5.0 73 43-115 38-123 (296)
100 cd07406 MPP_CG11883_N Drosophi 95.3 0.028 6E-07 47.6 4.6 64 45-113 3-82 (257)
101 cd07409 MPP_CD73_N CD73 ecto-5 95.0 0.038 8.2E-07 47.4 4.9 66 44-114 2-94 (281)
102 PRK09419 bifunctional 2',3'-cy 95.0 0.023 5E-07 58.0 3.9 66 43-113 661-735 (1163)
103 KOG2863 RNA lariat debranching 94.7 0.046 1E-06 48.2 4.5 73 43-115 1-89 (456)
104 KOG3662 Cell division control 94.4 0.076 1.6E-06 47.8 5.2 72 42-113 48-143 (410)
105 TIGR00282 metallophosphoestera 94.4 0.065 1.4E-06 45.8 4.6 66 43-113 1-70 (266)
106 KOG1432 Predicted DNA repair e 93.9 0.12 2.5E-06 45.5 5.3 71 44-115 55-148 (379)
107 COG3855 Fbp Uncharacterized pr 93.3 0.083 1.8E-06 48.1 3.4 42 70-116 191-232 (648)
108 COG0737 UshA 5'-nucleotidase/2 92.8 0.11 2.4E-06 48.4 3.7 69 41-114 25-115 (517)
109 cd08162 MPP_PhoA_N Synechococc 92.6 0.16 3.5E-06 44.4 4.2 65 44-113 2-90 (313)
110 PF04042 DNA_pol_E_B: DNA poly 92.3 0.2 4.3E-06 40.7 4.2 72 45-116 1-93 (209)
111 cd07405 MPP_UshA_N Escherichia 92.2 0.14 3E-06 44.1 3.3 66 44-114 2-87 (285)
112 KOG2310 DNA repair exonuclease 92.1 0.35 7.6E-06 45.0 5.7 55 42-96 13-79 (646)
113 cd07407 MPP_YHR202W_N Saccharo 91.5 0.19 4E-06 43.3 3.3 67 43-114 6-97 (282)
114 cd07387 MPP_PolD2_C PolD2 (DNA 91.4 4.1 8.9E-05 34.7 11.2 45 71-117 44-110 (257)
115 PRK09420 cpdB bifunctional 2', 91.3 0.23 4.9E-06 47.8 4.0 69 40-113 23-121 (649)
116 TIGR01390 CycNucDiestase 2',3' 91.3 0.22 4.8E-06 47.7 3.8 66 43-113 3-98 (626)
117 PRK09419 bifunctional 2',3'-cy 91.1 0.22 4.7E-06 51.1 3.8 67 42-113 41-138 (1163)
118 cd07382 MPP_DR1281 Deinococcus 91.1 0.42 9E-06 40.6 4.9 65 44-113 1-69 (255)
119 KOG2476 Uncharacterized conser 89.9 0.75 1.6E-05 42.0 5.7 69 42-111 5-75 (528)
120 KOG1378 Purple acid phosphatas 88.6 0.47 1E-05 43.3 3.5 72 42-116 147-223 (452)
121 KOG3325 Membrane coat complex 88.6 1.9 4.2E-05 33.6 6.3 99 45-181 3-107 (183)
122 PTZ00422 glideosome-associated 88.5 0.66 1.4E-05 41.8 4.3 70 42-113 26-108 (394)
123 PRK11907 bifunctional 2',3'-cy 88.4 0.51 1.1E-05 46.5 3.9 67 42-113 115-212 (814)
124 TIGR01530 nadN NAD pyrophospha 88.1 0.72 1.6E-05 43.5 4.5 52 57-113 36-93 (550)
125 KOG3339 Predicted glycosyltran 86.7 11 0.00025 30.5 9.8 85 71-161 40-140 (211)
126 COG1311 HYS2 Archaeal DNA poly 86.6 2.5 5.4E-05 38.9 6.9 73 44-116 227-323 (481)
127 PTZ00235 DNA polymerase epsilo 85.3 3.9 8.5E-05 35.4 7.1 73 42-114 27-122 (291)
128 PRK09418 bifunctional 2',3'-cy 84.2 1.1 2.3E-05 44.1 3.6 67 42-113 39-141 (780)
129 PRK09558 ushA bifunctional UDP 80.0 1.5 3.2E-05 41.3 2.8 68 42-114 34-121 (551)
130 KOG2679 Purple (tartrate-resis 77.5 1.2 2.7E-05 38.1 1.3 69 42-114 43-126 (336)
131 KOG3947 Phosphoesterases [Gene 76.7 2.9 6.3E-05 35.9 3.3 65 43-115 62-127 (305)
132 PF06874 FBPase_2: Firmicute f 73.0 3 6.5E-05 39.7 2.8 38 28-65 18-55 (640)
133 PRK10773 murF UDP-N-acetylmura 61.6 59 0.0013 29.7 8.8 67 42-109 324-392 (453)
134 COG0634 Hpt Hypoxanthine-guani 60.1 89 0.0019 25.1 8.8 78 14-95 10-118 (178)
135 PF02875 Mur_ligase_C: Mur lig 59.3 22 0.00049 24.5 4.5 68 43-110 12-81 (91)
136 cd01533 4RHOD_Repeat_2 Member 54.2 63 0.0014 22.9 6.3 92 7-109 3-100 (109)
137 PF12641 Flavodoxin_3: Flavodo 53.8 81 0.0018 24.7 7.3 52 46-97 2-66 (160)
138 PF14178 YppF: YppF-like prote 53.2 46 0.00099 21.7 4.7 56 1-69 1-56 (60)
139 cd07382 MPP_DR1281 Deinococcus 50.4 20 0.00044 30.4 3.6 37 72-109 1-37 (255)
140 COG1692 Calcineurin-like phosp 49.7 26 0.00057 29.7 4.0 66 43-113 1-70 (266)
141 COG3855 Fbp Uncharacterized pr 49.4 9.3 0.0002 35.3 1.4 38 28-65 23-60 (648)
142 PF13258 DUF4049: Domain of un 44.2 31 0.00067 29.2 3.6 87 71-164 86-185 (318)
143 PF02885 Glycos_trans_3N: Glyc 43.2 39 0.00084 22.1 3.4 27 2-28 1-27 (66)
144 COG3207 DIT1 Pyoverdine/dityro 43.1 39 0.00085 29.0 4.1 42 38-79 101-156 (330)
145 KOG3425 Uncharacterized conser 42.4 1E+02 0.0022 23.2 5.7 60 55-114 12-79 (128)
146 TIGR00282 metallophosphoestera 42.0 30 0.00065 29.6 3.3 40 72-114 2-41 (266)
147 KOG3770 Acid sphingomyelinase 42.0 58 0.0013 31.0 5.4 62 56-117 195-266 (577)
148 COG1692 Calcineurin-like phosp 38.4 71 0.0015 27.1 4.9 39 72-111 2-40 (266)
149 TIGR00024 SbcD_rel_arch putati 36.9 1E+02 0.0022 25.5 5.7 60 12-79 34-99 (225)
150 PF09949 DUF2183: Uncharacteri 35.6 1.3E+02 0.0028 21.7 5.3 43 56-107 53-95 (100)
151 TIGR01143 murF UDP-N-acetylmur 34.3 1.6E+02 0.0035 26.4 7.1 94 16-111 271-365 (417)
152 PF06490 FleQ: Flagellar regul 32.3 97 0.0021 22.4 4.3 64 44-114 1-81 (109)
153 smart00411 BHL bacterial (prok 32.0 1E+02 0.0022 21.0 4.3 34 1-34 1-34 (90)
154 COG4320 Uncharacterized protei 31.6 29 0.00062 30.7 1.6 59 32-98 46-108 (410)
155 TIGR01201 HU_rel DNA-binding p 30.5 83 0.0018 24.1 3.9 31 2-32 32-62 (145)
156 cd01518 RHOD_YceA Member of th 30.5 1.5E+02 0.0032 20.5 5.0 86 13-110 1-95 (101)
157 COG0770 MurF UDP-N-acetylmuram 30.4 2.2E+02 0.0048 26.3 7.3 70 41-110 324-395 (451)
158 TIGR03395 sphingomy sphingomye 29.3 1.2E+02 0.0025 26.0 5.0 31 70-101 177-207 (283)
159 COG1880 CdhB CO dehydrogenase/ 29.0 2.1E+02 0.0045 22.7 5.7 13 70-82 109-121 (170)
160 PRK11929 putative bifunctional 28.7 2.2E+02 0.0048 28.7 7.6 71 42-112 833-905 (958)
161 PF13607 Succ_CoA_lig: Succiny 27.4 1.3E+02 0.0028 22.9 4.4 50 58-111 42-91 (138)
162 COG3433 Aryl carrier domain [S 26.8 39 0.00084 23.0 1.2 22 78-99 23-44 (74)
163 KOG3040 Predicted sugar phosph 26.6 3.3E+02 0.0072 22.8 6.8 73 4-76 54-145 (262)
164 PRK00485 fumC fumarate hydrata 26.3 5.1E+02 0.011 23.9 8.9 89 9-97 58-151 (464)
165 PRK05564 DNA polymerase III su 25.8 2E+02 0.0044 24.6 6.0 58 13-76 70-128 (313)
166 PF12085 DUF3562: Protein of u 25.4 1.6E+02 0.0034 19.7 3.9 38 2-39 5-42 (66)
167 PF02609 Exonuc_VII_S: Exonucl 25.2 1.8E+02 0.0038 18.1 4.5 31 3-34 8-38 (53)
168 PRK05749 3-deoxy-D-manno-octul 22.9 3.5E+02 0.0075 24.0 7.1 44 48-95 239-284 (425)
169 PF06345 Drf_DAD: DRF Autoregu 22.5 86 0.0019 14.3 1.5 12 3-14 3-14 (15)
170 cd03030 GRX_SH3BGR Glutaredoxi 22.1 1.4E+02 0.0031 21.0 3.5 20 44-63 62-82 (92)
171 cd01449 TST_Repeat_2 Thiosulfa 21.3 2.1E+02 0.0046 20.1 4.5 48 56-109 64-111 (118)
172 PRK00285 ihfA integration host 21.0 1.6E+02 0.0035 20.7 3.7 33 1-33 3-35 (99)
173 PF04839 PSRP-3_Ycf65: Plastid 20.7 2.3E+02 0.005 17.7 4.2 30 4-33 14-43 (49)
174 PF04263 TPK_catalytic: Thiami 20.7 95 0.0021 23.1 2.5 55 43-97 36-112 (123)
175 TIGR01428 HAD_type_II 2-haloal 20.7 3.3E+02 0.0072 21.2 5.9 66 43-111 109-174 (198)
176 TIGR01143 murF UDP-N-acetylmur 20.5 4.4E+02 0.0095 23.6 7.3 67 43-114 325-409 (417)
177 PRK15455 PrkA family serine pr 20.0 8.2E+02 0.018 23.8 9.4 104 2-115 20-149 (644)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-64 Score=411.12 Aligned_cols=221 Identities=64% Similarity=1.223 Sum_probs=218.2
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEeccccc
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVD 81 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vd 81 (222)
++|..+|++++.+.+++.++.+||.+++++|.+|+++..+..|+.|+|||||++.+|..+|+..|..+.++|+|||||||
T Consensus 2 dldr~ie~L~~~~li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t~YLFLGDyVD 81 (303)
T KOG0372|consen 2 DLDRQIEQLRRCELIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPETNYLFLGDYVD 81 (303)
T ss_pred cHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCCceEeecchhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcEEEEec
Q 027516 82 RGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHG 161 (222)
Q Consensus 82 rG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHa 161 (222)
||.+|+|++.+|..+|..||+++.+||||||.+.++..|||++||+++||+...|+.+.+.|++||++|+|++++|||||
T Consensus 82 RG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kifCVHG 161 (303)
T KOG0372|consen 82 RGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIFCVHG 161 (303)
T ss_pred cccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHhhhhcccCCCCCCcccccccCCCCCCCCCccCCCCCceecCHHHHHhcC
Q 027516 162 GLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 162 Gi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
|++|++.+++||+.++|.+++|.++.++|+|||||++..+|..|+||+|+.||.+++++|+
T Consensus 162 GlSP~i~~lDqIr~lDR~~Eiph~g~m~DllWSDPee~~g~~~SPRGaGylFG~dvv~~F~ 222 (303)
T KOG0372|consen 162 GLSPSIQTLDQIRVLDRKQEVPHDGAMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVVESFL 222 (303)
T ss_pred CCCcchhhHHHHHHhhccccCCCCCcchheeccCcccCCCcccCCCCccccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999995
No 2
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-60 Score=377.90 Aligned_cols=222 Identities=81% Similarity=1.394 Sum_probs=218.8
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccc
Q 027516 1 MDLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFV 80 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~v 80 (222)
+++|++|+..++++.||+.|+.+||+-++++|+.|.++.+++.|+.|+|||||++.+|..+++..|..|+..+||+||||
T Consensus 4 ~d~d~wi~~vk~ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~tnYiFmGDfV 83 (306)
T KOG0373|consen 4 MDLDQWIETVKKCKYLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDTNYIFMGDFV 83 (306)
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCcceEEecccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcEEEEe
Q 027516 81 DRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVH 160 (222)
Q Consensus 81 drG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vH 160 (222)
|||.+|+|+..+++.||.+||.++.++|||||.+.+...|||++||..+||+...|+.+.+.|+.|+++|+|+++++|||
T Consensus 84 DRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~vLCVH 163 (306)
T KOG0373|consen 84 DRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKVLCVH 163 (306)
T ss_pred ccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHhhhhcccCCCCCCcccccccCCCCCCCCCccCCCCCceecCHHHHHhcC
Q 027516 161 GGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 161 aGi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
||+||+...++||+.+.|.+++|.++.++|++||||++.+.|..++||+|.+||++++++|+
T Consensus 164 GGLSPdirtlDqir~i~R~qEiPh~G~fcDlmWSDPedve~W~vSpRGAGwlFGskVt~eF~ 225 (306)
T KOG0373|consen 164 GGLSPDIRTLDQIRLIERNQEIPHEGPFCDLMWSDPEDVETWAVSPRGAGWLFGSKVTTEFN 225 (306)
T ss_pred CCCCccceeHHHHHhHHhhccCCCCCCccceeccChhhhhhheeCCCCcceeechhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999994
No 3
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=2.6e-55 Score=377.81 Aligned_cols=222 Identities=68% Similarity=1.210 Sum_probs=215.0
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccc
Q 027516 1 MDLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFV 80 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~v 80 (222)
++++.+++.+++++.++++++.+||++|.+++++||+++++..+++|+||||||+.+|.++++..+..+.++++||||||
T Consensus 1 ~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyV 80 (303)
T PTZ00239 1 MDIDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFV 80 (303)
T ss_pred CCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEc
Confidence 57899999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcEEEEe
Q 027516 81 DRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVH 160 (222)
Q Consensus 81 drG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vH 160 (222)
|||++|.|++.++++++..+|.+++++|||||.+.++..++|..++..+|+....|+.+.++|++||++++++++++|||
T Consensus 81 DRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~cvH 160 (303)
T PTZ00239 81 DRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVH 160 (303)
T ss_pred CCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEEEEc
Confidence 99999999999999999999999999999999999999999999999999877889999999999999999999999999
Q ss_pred cCCCCCCCCHHHHhhhhcccCCCCCCcccccccCCCCCCCCCccCCCCCceecCHHHHHhcC
Q 027516 161 GGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 161 aGi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
||++|...++++++.++|+.+.|.++.++|+|||||.+..+|.+|+||.|++||++++++||
T Consensus 161 gGi~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl 222 (303)
T PTZ00239 161 GGLSPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFC 222 (303)
T ss_pred CccCcccccHhhhccccCCCCCCCCCCceeeEecCccccCCCccCCCCCccccCHHHHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999999996
No 4
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=4.6e-55 Score=374.09 Aligned_cols=221 Identities=67% Similarity=1.249 Sum_probs=213.9
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEeccccc
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVD 81 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vd 81 (222)
++++++++++++..++++++.+|+++|++++++||+++++..+++|+||||||+.+|.++|+..+.++.+++||||||||
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVD 80 (285)
T cd07415 1 DLDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVD 80 (285)
T ss_pred CHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECC
Confidence 47899999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred CCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcEEEEec
Q 027516 82 RGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHG 161 (222)
Q Consensus 82 rG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHa 161 (222)
||++|.||+.++++++..+|.+++++|||||.+.++..++|..++..+|+...+|..+.++|++||++++++++++||||
T Consensus 81 RG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~cvHg 160 (285)
T cd07415 81 RGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHG 160 (285)
T ss_pred CCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEEEEcC
Confidence 99999999999999999999999999999999999999999999999998778999999999999999999999999999
Q ss_pred CCCCCCCCHHHHhhhhcccCCCCCCcccccccCCCCCCCCCccCCCCCceecCHHHHHhcC
Q 027516 162 GLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 162 Gi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
|++|...++++++.++|+.+.+..+.+.|++||||....+|.+|+||.|++||++++++||
T Consensus 161 Gi~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl 221 (285)
T cd07415 161 GLSPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFN 221 (285)
T ss_pred CCCCCcccHHHhhcccCCCCCCCCCCccceEecCCCccCCCCcCCCCCccccCHHHHHHHH
Confidence 9999999999999999999999999999999999998889999999999999999999996
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=2.5e-54 Score=373.48 Aligned_cols=220 Identities=37% Similarity=0.645 Sum_probs=199.4
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCC----CcceeccCcCCHHHHHHHHHhcCCCC-CCcEEEe
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNS----PVTVCGDIHGQFHDLMKLFQTGGHVP-ETNYIFM 76 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~----~i~viGDiHG~~~~l~~ll~~~~~~~-~~~~vfl 76 (222)
+++.+++.+.+++.|+++++.+||++|+++|++||+++.+.. |++||||||||+.+|.++|+..+.++ .+++|||
T Consensus 6 ~~~~~i~~~~~~~~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFL 85 (321)
T cd07420 6 HIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFN 85 (321)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEe
Confidence 478999999999999999999999999999999999998875 89999999999999999999998775 4789999
Q ss_pred cccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCC--hhHHHHHHHHhcccceEEEEcC
Q 027516 77 GDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGN--ANAWRYCTDVFDYLTLSAIIDG 154 (222)
Q Consensus 77 GD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lP~~~~i~~ 154 (222)
|||||||++|+||+.+++++|..+|+++++||||||.+.++..+||..++..+|+. ..+|..+.++|++||+++++++
T Consensus 86 GDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaaii~~ 165 (321)
T cd07420 86 GDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDN 165 (321)
T ss_pred ccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceEEEcC
Confidence 99999999999999999999999999999999999999999999999999999984 6799999999999999999999
Q ss_pred cEEEEecCCCCCCCCHHHHhhhhcccC-----CCCC----------------------CcccccccCCCCCCCC-CccCC
Q 027516 155 TVLCVHGGLSPDIRTIDQIRVIERNCE-----IPHE----------------------GPFCDLMWSDPEDIET-WAVSP 206 (222)
Q Consensus 155 ~~l~vHaGi~~~~~~~~~i~~i~r~~~-----~~~~----------------------~~~~dllWs~p~~~~~-~~~~~ 206 (222)
+++|||||+++ ..++++++.++|+.. +|.. +.+.|+|||||.+..+ |.+++
T Consensus 166 ~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~~~~~~~~~~ 244 (321)
T cd07420 166 KILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGCKPNTF 244 (321)
T ss_pred CEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCccCCCCCccCC
Confidence 99999999987 467899999988532 1210 3468999999996555 67778
Q ss_pred CCCceecCHHHHHhcC
Q 027516 207 RGAGWLFGSRVTSEVM 222 (222)
Q Consensus 207 ~g~~~~fG~~~~~~f~ 222 (222)
||.|++||.+++++||
T Consensus 245 RG~g~~FG~~~~~~Fl 260 (321)
T cd07420 245 RGGGCYFGPDVTSKVL 260 (321)
T ss_pred CCCccccCHHHHHHHH
Confidence 9999999999999996
No 6
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=4.5e-53 Score=365.14 Aligned_cols=220 Identities=43% Similarity=0.805 Sum_probs=207.9
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEeccccc
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVD 81 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vd 81 (222)
+++.|+|.+++++.++++++.+|+++|+++|++||+++++..+++|+||||||+.+|.++|+..+.++.++++|||||||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVD 81 (305)
T cd07416 2 RIDVLKAHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVD 81 (305)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccC
Confidence 68899999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred CCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcEEEEec
Q 027516 82 RGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHG 161 (222)
Q Consensus 82 rG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHa 161 (222)
||++|.||+.++++++..+|.+++++|||||.+.++..++|..++..+| ....|..+.++|++||++++++++++||||
T Consensus 82 RG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y-~~~l~~~~~~~f~~LPlaaii~~~i~~vHG 160 (305)
T cd07416 82 RGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDACMEAFDCLPLAALMNQQFLCVHG 160 (305)
T ss_pred CCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhc-cHHHHHHHHHHHhhccceeEEcCCEEEEcC
Confidence 9999999999999999999999999999999999988999999999999 467889999999999999999999999999
Q ss_pred CCCCCCCCHHHHhhhhcccCCCCCCcccccccCCCCCCC-------CCccC-CCCCceecCHHHHHhcC
Q 027516 162 GLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIE-------TWAVS-PRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 162 Gi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~~~-------~~~~~-~~g~~~~fG~~~~~~f~ 222 (222)
|++|...++++++.++|+.+.|..+.++|+|||||.... +|..+ +||.|++||++++++||
T Consensus 161 Gi~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~~~~~~Fl 229 (305)
T cd07416 161 GLSPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFL 229 (305)
T ss_pred CCCcccccHHHhcccCCCCCCCCCCcceeeeecCcccccccccccccccccCCCCCceecCHHHHHHHH
Confidence 999999999999999999999989999999999997422 46654 89999999999999996
No 7
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=4.5e-53 Score=365.24 Aligned_cols=220 Identities=43% Similarity=0.934 Sum_probs=209.5
Q ss_pred CHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcE
Q 027516 2 DLDQWIAKVKEGQ--------HLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNY 73 (222)
Q Consensus 2 ~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~ 73 (222)
+++.+++++.+.. .++++++.+||++|.+++++||+++++..+++|+||||||+.+|.++++..++++.+++
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~~y 89 (320)
T PTZ00480 10 DVDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPESNY 89 (320)
T ss_pred CHHHHHHHHHhccccCccccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcceE
Confidence 5788999998644 68999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEc
Q 027516 74 IFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIID 153 (222)
Q Consensus 74 vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~ 153 (222)
||||||||||++|+||+.+++.++..+|.++++||||||...++..++|..++..+|+ ..+|..+.+.|++||++|+++
T Consensus 90 lfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~-~~l~~~~~~~F~~LPlaAiI~ 168 (320)
T PTZ00480 90 LFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT-IKLWKTFTDCFNCLPVAALID 168 (320)
T ss_pred EEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC-HHHHHHHHHHHHhccHhheec
Confidence 9999999999999999999999999999999999999999999999999999999995 679999999999999999999
Q ss_pred CcEEEEecCCCCCCCCHHHHhhhhcccCCCCCCcccccccCCCCC-CCCCccCCCCCceecCHHHHHhcC
Q 027516 154 GTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPED-IETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 154 ~~~l~vHaGi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~-~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
++++|||||++|....+++++.++|+.+.+..+.+.|+|||||.. ..+|.+|+||.|++||++++++||
T Consensus 169 ~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~Fl 238 (320)
T PTZ00480 169 EKILCMHGGLSPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFL 238 (320)
T ss_pred CcEEEEcCCcCcccCCHHHHhcccCCCCCCccchhhheeecCcccccCCCccCCCCCccccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 678999999999999999999996
No 8
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=2.7e-52 Score=358.30 Aligned_cols=220 Identities=45% Similarity=0.965 Sum_probs=208.2
Q ss_pred CHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcE
Q 027516 2 DLDQWIAKVKEGQ--------HLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNY 73 (222)
Q Consensus 2 ~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~ 73 (222)
+++.+++++.+.. .++++++.+||++|++++++||+++++..+++|+||||||+.+|.++|+..+.++.+++
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~~~ 80 (293)
T cd07414 1 DIDSIIERLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNY 80 (293)
T ss_pred CHHHHHHHHHhccccCCcccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcceE
Confidence 3678888887654 68999999999999999999999999999999999999999999999999999989999
Q ss_pred EEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEc
Q 027516 74 IFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIID 153 (222)
Q Consensus 74 vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~ 153 (222)
||||||||||++|+|++.+++++|..+|.+++++|||||.+.++..++|..++..+|+ ..+|..+.++|++||++++++
T Consensus 81 lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~-~~l~~~~~~~f~~lPlaa~i~ 159 (293)
T cd07414 81 LFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN-IKLWKTFTDCFNCLPVAAIID 159 (293)
T ss_pred EEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh-HHHHHHHHHHHHHhHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999995 578999999999999999999
Q ss_pred CcEEEEecCCCCCCCCHHHHhhhhcccCCCCCCcccccccCCCC-CCCCCccCCCCCceecCHHHHHhcC
Q 027516 154 GTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPE-DIETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 154 ~~~l~vHaGi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~-~~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
++++|||||++|...++++++.++|+.+.+..+.+.|++||||. ...+|.+|+||.|++||.+++++||
T Consensus 160 ~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl 229 (293)
T cd07414 160 EKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFL 229 (293)
T ss_pred CcEEEEccCCCcccCcHHHHhcccCCCCCCchhhHhhhhccCcccccCCCccCCCCcceecCHHHHHHHH
Confidence 99999999999999999999999999999988999999999998 4678999999999999999999996
No 9
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=4.7e-52 Score=356.48 Aligned_cols=219 Identities=37% Similarity=0.841 Sum_probs=206.1
Q ss_pred HHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcEE
Q 027516 3 LDQWIAKVKEGQ--------HLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYI 74 (222)
Q Consensus 3 ~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~v 74 (222)
++.+++++.+.. .++.+++.+|+++|.+++++||+++++..+++|+||||||+.+|.+++++++.++.++++
T Consensus 4 ~~~~i~~~~~~~~~~~~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~~~~l 83 (294)
T PTZ00244 4 VQTLIEKMLTVKGNRTQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYSNYL 83 (294)
T ss_pred HHHHHHHHHhcccCCCccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCcccEE
Confidence 466777776543 689999999999999999999999999999999999999999999999999998888999
Q ss_pred EecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcC
Q 027516 75 FMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDG 154 (222)
Q Consensus 75 flGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~ 154 (222)
|||||||||++|.||+.+++.+|..+|.+++++|||||.+.++..++|..++..+|+ ...|..+.++|++||+++++++
T Consensus 84 fLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~-~~l~~~~~~~f~~lPlaaii~~ 162 (294)
T PTZ00244 84 FLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN-IKLFKAFTDVFNTMPVCCVISE 162 (294)
T ss_pred EeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh-HHHHHHHHHHHHhCchheEecC
Confidence 999999999999999999999999999999999999999999999999999999995 6789999999999999999999
Q ss_pred cEEEEecCCCCCCCCHHHHhhhhcccCCCCCCcccccccCCCCC-CCCCccCCCCCceecCHHHHHhcC
Q 027516 155 TVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPED-IETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 155 ~~l~vHaGi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~-~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
+++|||||++|.+.++++++.++|+.+.+..+.+.|++||||.. ..+|.+++||.|++||++++++||
T Consensus 163 ~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl 231 (294)
T PTZ00244 163 KIICMHGGLSPDLTSLASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFL 231 (294)
T ss_pred eeEEEcCCCCchhhHHHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCccccCHHHHHHHH
Confidence 99999999999999999999999999988889999999999984 679999999999999999999996
No 10
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=4.3e-52 Score=359.94 Aligned_cols=220 Identities=40% Similarity=0.694 Sum_probs=205.7
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCCC----cceeccCcCCHHHHHHHHHhcCCCCC-CcEEEe
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSP----VTVCGDIHGQFHDLMKLFQTGGHVPE-TNYIFM 76 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~----i~viGDiHG~~~~l~~ll~~~~~~~~-~~~vfl 76 (222)
.++.+++.+++++.|+++++.+||++|.+++++||+++++..+ ++||||||||+.+|.++|+..++++. +++|||
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFL 94 (316)
T cd07417 15 FVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFN 94 (316)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEE
Confidence 3789999999999999999999999999999999999988754 99999999999999999999997654 679999
Q ss_pred cccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcE
Q 027516 77 GDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTV 156 (222)
Q Consensus 77 GD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~ 156 (222)
|||||||++|+||+.+++++|..+|.++++||||||.+.++..++|..++..+|+ ..+|..+.++|++||+++++++++
T Consensus 95 GDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~-~~l~~~~~~~f~~LPlaaii~~~~ 173 (316)
T cd07417 95 GDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYN-EQMFDLFSEVFNWLPLAHLINGKV 173 (316)
T ss_pred eeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhccc-HHHHHHHHHHHHhchHhheeCCeE
Confidence 9999999999999999999999999999999999999999999999999999995 568899999999999999999999
Q ss_pred EEEecCC-CCCCCCHHHHhhhhcccCCCCCCcccccccCCCCCCCCCccCCCCCceecCHHHHHhcC
Q 027516 157 LCVHGGL-SPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 157 l~vHaGi-~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
+|||||+ ++...++++++.++|+.+.+.++.+.|+|||||.+..+|.+|+||.|+.||++++++||
T Consensus 174 ~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~s~Rg~g~~fg~~~~~~Fl 240 (316)
T cd07417 174 LVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFL 240 (316)
T ss_pred EEEccccccCCCccHHHhhcccCCCCCCccccceeeeecCCCCCCCCCccCCCCceEeCHHHHHHHH
Confidence 9999999 45678899999999998888889999999999998889999999999999999999996
No 11
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2e-52 Score=342.12 Aligned_cols=220 Identities=60% Similarity=1.173 Sum_probs=215.3
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEeccccc
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVD 81 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vd 81 (222)
.++.+++.++..+++++.++..+++.|+++|++|.++.+++.++.|+||+|||+++|..+++..|..|+..++|+|||||
T Consensus 19 ~vd~~ie~L~~ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdtnylfmGDyvd 98 (319)
T KOG0371|consen 19 DVDPWIEQLYKCKPLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDTNYLFMGDYVD 98 (319)
T ss_pred ccccchHHHHhcCCCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCcceeeeeeecc
Confidence 46889999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred CCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcEEEEec
Q 027516 82 RGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHG 161 (222)
Q Consensus 82 rG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHa 161 (222)
||++|.|++.++.++|..||++|.+||||||...+...|+|+.||+++||+..+|+.+.+.|+++|+.+.|+++++|.||
T Consensus 99 rGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~ifc~HG 178 (319)
T KOG0371|consen 99 RGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESKIFCLHG 178 (319)
T ss_pred cccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHhhhhcccCCCCCCcccccccCCCCCCCCCccCCCCCceecCHHHHHhc
Q 027516 162 GLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEV 221 (222)
Q Consensus 162 Gi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~~~~~~~~~~g~~~~fG~~~~~~f 221 (222)
|++|+...+++++.++|.+++|.+++++|+|||+|++..+|..++||.|+.||.+..++|
T Consensus 179 gLspsi~tld~~r~~dr~~evphegpmcDlLwsdpddr~gwg~sprgag~tfg~di~~~f 238 (319)
T KOG0371|consen 179 GLSPSIDTLDLIRLLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQF 238 (319)
T ss_pred CcCcccchHHHHHHHHHhhcccCCCChhheeccCcccCCCCCCCCCCCCcccchhhHHHh
Confidence 999999999999999999999999999999999999999999999999999999999987
No 12
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.4e-52 Score=361.89 Aligned_cols=208 Identities=46% Similarity=0.982 Sum_probs=202.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcC-CCCCCcEEEecccccCCCCcHHHHHHH
Q 027516 15 HLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGG-HVPETNYIFMGDFVDRGYNSLEVFTIL 93 (222)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~-~~~~~~~vflGD~vdrG~~s~evl~~l 93 (222)
.++.+|+.+|+..+.+++.++|+++++++||.|+|||||++.+|.+++...+ ++++.++||||||||||++|+|++.++
T Consensus 31 ~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL 110 (331)
T KOG0374|consen 31 PLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLL 110 (331)
T ss_pred eccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcccEEEecccccCCccceEEeehh
Confidence 3889999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcEEEEecCCCCCCCCHHHH
Q 027516 94 LLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQI 173 (222)
Q Consensus 94 ~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHaGi~~~~~~~~~i 173 (222)
.++|++||++++++|||||.+..+..|||++|+.++|+....|+.+...|++||++++|+++++|+|||++|...+++++
T Consensus 111 ~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i 190 (331)
T KOG0374|consen 111 FALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGLSPHLKSLDQI 190 (331)
T ss_pred hhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCCChhhcChHHH
Confidence 99999999999999999999999999999999999997778999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCcccccccCCCCC-CCCCccCCCCCceecCHHHHHhcC
Q 027516 174 RVIERNCEIPHEGPFCDLMWSDPED-IETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 174 ~~i~r~~~~~~~~~~~dllWs~p~~-~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
+.+.||.+.+..+.++|++||||+. ..+|..|.||.+++||++++++||
T Consensus 191 ~~i~rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~f~ 240 (331)
T KOG0374|consen 191 RAIPRPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVEDFC 240 (331)
T ss_pred hhccCCcCCCccceeeeeeecCCCCCCCCcccCCCceeeEecHHHHHHHH
Confidence 9999999999999999999999995 699999999999999999999997
No 13
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=4.7e-52 Score=353.34 Aligned_cols=219 Identities=43% Similarity=0.798 Sum_probs=209.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccC
Q 027516 3 LDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDR 82 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdr 82 (222)
.+-+.++|+...++++++++.|+.++..+|++|++++++++||.|+|||||+|.+|+++++..|.+.+.+|+||||||||
T Consensus 48 ~~~Lr~Hf~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t~YLFLGDYVDR 127 (517)
T KOG0375|consen 48 HDVLRNHFIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDR 127 (517)
T ss_pred hHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccceeEeecccccc
Confidence 56788999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred CCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcEEEEecC
Q 027516 83 GYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGG 162 (222)
Q Consensus 83 G~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHaG 162 (222)
|..|+||+.+|.+||+.||..++++|||||.+.+...+.|..||.-+| +..+|+.+.+.|+.||+||+.++.++|||||
T Consensus 128 GyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKY-se~vYdaCmesFd~LPLAAlmNqQflCVHGG 206 (517)
T KOG0375|consen 128 GYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDACMESFDCLPLAALMNQQFLCVHGG 206 (517)
T ss_pred ceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhc-cHHHHHHHHHHhccchHHHHhcCceEEecCC
Confidence 999999999999999999999999999999999999999999999999 7889999999999999999999999999999
Q ss_pred CCCCCCCHHHHhhhhcccCCCCCCcccccccCCCCCC-------CCCc-cCCCCCceecCHHHHHhcC
Q 027516 163 LSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDI-------ETWA-VSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 163 i~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~~-------~~~~-~~~~g~~~~fG~~~~~~f~ 222 (222)
++|...++++|+.++|+.++|.-|++||+|||||.+. +.|. ++.||+.|.|...|+++||
T Consensus 207 lSPEi~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCSyfysy~A~C~FL 274 (517)
T KOG0375|consen 207 LSPEIHTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYFYSYPAVCEFL 274 (517)
T ss_pred CCcccccHHHHHhhhhccCCCccCcchhhhccChhhhccccccccccccCccccccceechHHHHHHH
Confidence 9999999999999999999999999999999999842 2343 5589999999999999996
No 14
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=8.4e-51 Score=346.20 Aligned_cols=206 Identities=50% Similarity=0.955 Sum_probs=197.2
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHH
Q 027516 16 LLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLL 95 (222)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~ 95 (222)
++++++.+|+++|.+++++||+++++.++++|+||||||+.+|.++|+..+..+.+++||||||||||++|.||+.++++
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~ 80 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFA 80 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred hhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcEEEEecCCCCCCCCHHHHhh
Q 027516 96 LKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRV 175 (222)
Q Consensus 96 l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHaGi~~~~~~~~~i~~ 175 (222)
++..+|.+++++|||||.+.++..++|..++..+|+ ..+|+.+.++|++||++++++++++|||||++|...++++++.
T Consensus 81 lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~-~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~~~~l~~i~~ 159 (271)
T smart00156 81 LKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG-EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPDLTTLDDIRK 159 (271)
T ss_pred HHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC-HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCccCCHHHHhc
Confidence 999999999999999999999999999999999995 6799999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCcccccccCCCC-CCCCCccCCCCCceecCHHHHHhcC
Q 027516 176 IERNCEIPHEGPFCDLMWSDPE-DIETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 176 i~r~~~~~~~~~~~dllWs~p~-~~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
++|+.+.+.++.+.|++||||. ...+|.+|+||.|+.||++++++||
T Consensus 160 i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl 207 (271)
T smart00156 160 LKRPQEPPDEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFL 207 (271)
T ss_pred ccCCCCCCchhhhhheeecCCCcccCCCccCCCCCccccCHHHHHHHH
Confidence 9999988888999999999996 6788999999999999999999996
No 15
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=2.5e-50 Score=353.67 Aligned_cols=221 Identities=36% Similarity=0.605 Sum_probs=199.1
Q ss_pred CHHHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHhhCCCccccC----CCcceeccCcCCHHHHHHHHHhcCC
Q 027516 2 DLDQWIAKVKEG----------QHLLEDELQLLCEYVKEILIEESNVQPVN----SPVTVCGDIHGQFHDLMKLFQTGGH 67 (222)
Q Consensus 2 ~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~e~~~~~~~----~~i~viGDiHG~~~~l~~ll~~~~~ 67 (222)
++++||..+++. +.++.+++.+||++|+++|++||+++.+. .+++||||||||+.+|.++|+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~~g~ 90 (377)
T cd07418 11 WVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAGF 90 (377)
T ss_pred HHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHHhCC
Confidence 368899999765 56899999999999999999999999987 8999999999999999999999988
Q ss_pred CCC-CcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCC--hhHHHHHHHHhc
Q 027516 68 VPE-TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGN--ANAWRYCTDVFD 144 (222)
Q Consensus 68 ~~~-~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 144 (222)
++. +.+||||||||||++|+||+.+++.++..+|.++++||||||.+.++..++|..++..+|+. ..+|+.+.++|+
T Consensus 91 ~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~~~f~ 170 (377)
T cd07418 91 PDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLGCFE 170 (377)
T ss_pred CCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHHHHHH
Confidence 765 56999999999999999999999999999999999999999999999999999999999985 468999999999
Q ss_pred ccceEEEEcCcEEEEecCCC---------------------------CCCCCHHHHhhhhccc-CCCCCCc---cccccc
Q 027516 145 YLTLSAIIDGTVLCVHGGLS---------------------------PDIRTIDQIRVIERNC-EIPHEGP---FCDLMW 193 (222)
Q Consensus 145 ~lP~~~~i~~~~l~vHaGi~---------------------------~~~~~~~~i~~i~r~~-~~~~~~~---~~dllW 193 (222)
+||++++++++++|||||++ |...++++++.++|+. +++..+. ++|+||
T Consensus 171 ~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~dlLW 250 (377)
T cd07418 171 GLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPGDVLW 250 (377)
T ss_pred hCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccccceeeEe
Confidence 99999999999999999994 3456788999998864 5555543 689999
Q ss_pred CCCCCCCCCccC-CCCCceecCHHHHHhcC
Q 027516 194 SDPEDIETWAVS-PRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 194 s~p~~~~~~~~~-~~g~~~~fG~~~~~~f~ 222 (222)
|||....+|..+ .||.|++||.+++++||
T Consensus 251 SDP~~~~g~~~~~~RG~g~~FG~~~~~~FL 280 (377)
T cd07418 251 SDPSLTPGLSPNKQRGIGLLWGPDCTEEFL 280 (377)
T ss_pred eCCccCCCCCccCCCCCccccCHHHHHHHH
Confidence 999987888766 79999999999999996
No 16
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=6.2e-48 Score=334.29 Aligned_cols=210 Identities=38% Similarity=0.742 Sum_probs=191.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCCC--------CcEEEecccccCCC
Q 027516 13 GQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPE--------TNYIFMGDFVDRGY 84 (222)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~~--------~~~vflGD~vdrG~ 84 (222)
...++++++.+||++|.+++++||+++++..+++||||||||+++|.++|+..+.++. .++||||||||||+
T Consensus 18 ~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp 97 (311)
T cd07419 18 RFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGS 97 (311)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCC
Confidence 4568899999999999999999999999999999999999999999999999887643 47999999999999
Q ss_pred CcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCC-----hhHHHHHHHHhcccceEEEEcCcEEEE
Q 027516 85 NSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGN-----ANAWRYCTDVFDYLTLSAIIDGTVLCV 159 (222)
Q Consensus 85 ~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~lP~~~~i~~~~l~v 159 (222)
+|+||+.++++++..+|.++++||||||.+.++..++|..++..+|+. ...|..+.++|++||++++++++++||
T Consensus 98 ~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l~v 177 (311)
T cd07419 98 NSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKILCM 177 (311)
T ss_pred ChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEEEE
Confidence 999999999999999999999999999999999999999999888875 358899999999999999999999999
Q ss_pred ecCCCCCCCCHHHHhhhhccc-CCCCCCcccccccCCCCCC---CCCccCC---CCCc--eecCHHHHHhcC
Q 027516 160 HGGLSPDIRTIDQIRVIERNC-EIPHEGPFCDLMWSDPEDI---ETWAVSP---RGAG--WLFGSRVTSEVM 222 (222)
Q Consensus 160 HaGi~~~~~~~~~i~~i~r~~-~~~~~~~~~dllWs~p~~~---~~~~~~~---~g~~--~~fG~~~~~~f~ 222 (222)
|||++|...++++++.+.|+. ..+..+.+.|++||||... .+|.++. ||.| +.||++++++||
T Consensus 178 HgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~fg~~~~~~Fl 249 (311)
T cd07419 178 HGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFL 249 (311)
T ss_pred ccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeECHHHHHHHH
Confidence 999999999999999999987 4455677899999999953 4676665 9998 799999999996
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-40 Score=285.84 Aligned_cols=220 Identities=36% Similarity=0.658 Sum_probs=194.0
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccC----CCcceeccCcCCHHHHHHHHHhcCCCCC-CcEEEe
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVN----SPVTVCGDIHGQFHDLMKLFQTGGHVPE-TNYIFM 76 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~----~~i~viGDiHG~~~~l~~ll~~~~~~~~-~~~vfl 76 (222)
.++.|+|.|+..+.|++..+..++.+|+++|++.|++-++. ..+.|+||+||.+++|.-+|.+-|.+.. ..|||.
T Consensus 120 ~i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlPS~~npYvFN 199 (631)
T KOG0377|consen 120 HIDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLPSSSNPYVFN 199 (631)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCCCCCCCeeec
Confidence 47899999999999999999999999999999999998774 5799999999999999999999998754 679999
Q ss_pred cccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCC--hhHHHHHHHHhcccceEEEEcC
Q 027516 77 GDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGN--ANAWRYCTDVFDYLTLSAIIDG 154 (222)
Q Consensus 77 GD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lP~~~~i~~ 154 (222)
||+||||.+|+|||..|+++...+|..+++-|||||..++|-.|||.+|...+|.. ......+.+++.+||++.+++.
T Consensus 200 GDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~k~Ilr~leevy~WLPi~tiid~ 279 (631)
T KOG0377|consen 200 GDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHGKRILRFLEEVYRWLPIGTIIDS 279 (631)
T ss_pred CchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcccHHHHHHHHHHHhcchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999963 4667888999999999999999
Q ss_pred cEEEEecCCCCCCCCHHHHhhhhcccC-----CCC------C------C-----cccccccCCCCCCCCCccC-CCCCce
Q 027516 155 TVLCVHGGLSPDIRTIDQIRVIERNCE-----IPH------E------G-----PFCDLMWSDPEDIETWAVS-PRGAGW 211 (222)
Q Consensus 155 ~~l~vHaGi~~~~~~~~~i~~i~r~~~-----~~~------~------~-----~~~dllWs~p~~~~~~~~~-~~g~~~ 211 (222)
++++||||++.. +.++-+.+++|... +|- + + -+.|++||||....|..+| -||.|+
T Consensus 280 ~ilvvHGGiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~~~~GC~pNt~RGgG~ 358 (631)
T KOG0377|consen 280 RILVVHGGISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQATMGCVPNTLRGGGC 358 (631)
T ss_pred ceEEEecCcccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcccccCCCcccccCCcc
Confidence 999999999665 56677777776542 111 0 0 1468999999987776555 899999
Q ss_pred ecCHHHHHhcC
Q 027516 212 LFGSRVTSEVM 222 (222)
Q Consensus 212 ~fG~~~~~~f~ 222 (222)
+||+|+|.+||
T Consensus 359 yFGpDvT~~~L 369 (631)
T KOG0377|consen 359 YFGPDVTDNFL 369 (631)
T ss_pred eeCchHHHHHH
Confidence 99999999985
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=248.58 Aligned_cols=219 Identities=38% Similarity=0.685 Sum_probs=201.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccC----CCcceeccCcCCHHHHHHHHHhcCCCCC-CcEEEec
Q 027516 3 LDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVN----SPVTVCGDIHGQFHDLMKLFQTGGHVPE-TNYIFMG 77 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~----~~i~viGDiHG~~~~l~~ll~~~~~~~~-~~~vflG 77 (222)
+..+++.+++.+.++...+-+|+..+.+++.++|++++.. .++.++||+||++.++.++++..+.++. ..++|.|
T Consensus 170 vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfng 249 (476)
T KOG0376|consen 170 VKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNG 249 (476)
T ss_pred HHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcccccccC
Confidence 5677788899999999999999999999999999987664 5689999999999999999999987754 7899999
Q ss_pred ccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEEEcCcEE
Q 027516 78 DFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVL 157 (222)
Q Consensus 78 D~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l 157 (222)
|++|||..|.|+...+...+..+|++++++|||||.-.++..|+|..++..+|. ...+..+.+.|..||++..++++++
T Consensus 250 dfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyt-e~~~~~f~~~f~~LPl~~~i~~~~~ 328 (476)
T KOG0376|consen 250 DFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYT-EEMFNLFSEVFIWLPLAHLINNKVL 328 (476)
T ss_pred ceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhH-HHHHHhhhhhhccccchhhhcCceE
Confidence 999999999999999999999999999999999999999999999999999994 4455556689999999999999999
Q ss_pred EEecCCC-CCCCCHHHHhhhhcccCCCCCCcccccccCCCCCCCCCccCCCCCceecCHHHHHhcC
Q 027516 158 CVHGGLS-PDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEVM 222 (222)
Q Consensus 158 ~vHaGi~-~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~~~~~~~~~~g~~~~fG~~~~~~f~ 222 (222)
.+|||+. ++-..+++++.|.|+..++.++.+++++||+|+...+.+++.||.|..||.+++++||
T Consensus 329 ~~hgglf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~~g~s~S~r~~g~~fG~d~t~~f~ 394 (476)
T KOG0376|consen 329 VMHGGLFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQPANGRSPSKRGVGLQFGPDVTERFL 394 (476)
T ss_pred EEecCcCCCCCccHHHHHhhhhccCCcccccccccccCCCccccCCCccccCceeeeCCCchhhHH
Confidence 9999995 4456789999999999999999999999999999999999999999999999999997
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.97 E-value=2.5e-30 Score=214.13 Aligned_cols=168 Identities=44% Similarity=0.703 Sum_probs=132.0
Q ss_pred ceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHH
Q 027516 46 TVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDE 125 (222)
Q Consensus 46 ~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~ 125 (222)
+||||||||+++|.+++++++..+.+++||+||+||||+++.+++.++.+++.. |.++++|+||||.+.++...++..+
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~~ 79 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYDE 79 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcch
Confidence 689999999999999999999888899999999999999999999999998876 7889999999999987765543322
Q ss_pred H--------HHHhCChhHHHHHHHHhcccceEEEEcC-cEEEEecCCCCCCCCHHHHhhhhcccCCCCCCcccccccCCC
Q 027516 126 C--------QRKYGNANAWRYCTDVFDYLTLSAIIDG-TVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDP 196 (222)
Q Consensus 126 ~--------~~~~~~~~~~~~~~~~~~~lP~~~~i~~-~~l~vHaGi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p 196 (222)
. ...+.....+.....++..||++..++. +++|||||++|......+.. ..+......+++|+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~~~~~~~~~lw~r~ 153 (225)
T cd00144 80 DEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEPEDQLPEDLLWSDP 153 (225)
T ss_pred hhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCcccccceeeeecCC
Confidence 1 2233345567788899999999999876 89999999999976554433 2333455689999999
Q ss_pred CCCCCCc----------------cCCCCCceecCHHHHHh
Q 027516 197 EDIETWA----------------VSPRGAGWLFGSRVTSE 220 (222)
Q Consensus 197 ~~~~~~~----------------~~~~g~~~~fG~~~~~~ 220 (222)
.....+. ....+..+++||+++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~GHt~~~~ 193 (225)
T cd00144 154 LELPGGFGSSRRGGGPDAVEWFLKKNGLKLIVRGHTPVEE 193 (225)
T ss_pred CCCCCCCcCCCCCCCHHHHHHHHHHCCCeEEEEcCccccC
Confidence 8543322 12334458999998764
No 20
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.97 E-value=4.5e-30 Score=216.18 Aligned_cols=161 Identities=21% Similarity=0.364 Sum_probs=117.4
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCC---------CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCch
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHV---------PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~---------~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~ 113 (222)
++++||||||||++.|.++|+++++. +.+++||+||||||||+|.+|+++++++. .+.++++|+||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHH
Confidence 57899999999999999999998874 45899999999999999999999999885 34589999999999
Q ss_pred hhhhhhhc-------chHHHHHHhCC------hhHHHHHHHHhcccceEEEEc-CcEEEEecCCCCCCCC--HHHHhhhh
Q 027516 114 RQLTQVYG-------FYDECQRKYGN------ANAWRYCTDVFDYLTLSAIID-GTVLCVHGGLSPDIRT--IDQIRVIE 177 (222)
Q Consensus 114 ~~~~~~~~-------~~~~~~~~~~~------~~~~~~~~~~~~~lP~~~~i~-~~~l~vHaGi~~~~~~--~~~i~~i~ 177 (222)
++++...+ ...++..+|.. ..+.+.+.++++++|++..++ ++++|||||++|.... ..++.
T Consensus 79 ~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~~~~~~~~~~--- 155 (245)
T PRK13625 79 KLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDYIGRQDKKVQ--- 155 (245)
T ss_pred HHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHhcccchhhhh---
Confidence 98764321 12345555532 234567889999999988764 5799999999876411 11111
Q ss_pred cccCCCCCCcccccccC--------CCC-CCCCCccCCCCCc-eecCHHHHH
Q 027516 178 RNCEIPHEGPFCDLMWS--------DPE-DIETWAVSPRGAG-WLFGSRVTS 219 (222)
Q Consensus 178 r~~~~~~~~~~~dllWs--------~p~-~~~~~~~~~~g~~-~~fG~~~~~ 219 (222)
..++|+ ++. ....|..+.+|.. ++|||+++.
T Consensus 156 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~vV~GHtp~~ 196 (245)
T PRK13625 156 -----------TFVLYGDITGEKHPDGSPVRRDWAKEYKGTAWIVYGHTPVK 196 (245)
T ss_pred -----------hHHhhccccCCcCCCCCeeeeccchhcCCCcEEEECCCCCc
Confidence 122332 222 1345666666654 789999874
No 21
>PHA02239 putative protein phosphatase
Probab=99.96 E-value=2.2e-28 Score=204.39 Aligned_cols=156 Identities=23% Similarity=0.362 Sum_probs=118.0
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCC--CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhh
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHV--PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVY 120 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~--~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~ 120 (222)
|++++|||||||++.|.++++.+... +.+.+||+|||||||++|.++++.++++.. .+.++++|+||||.++++...
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~ 79 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIME 79 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHh
Confidence 57899999999999999999998543 468999999999999999999999988753 345799999999998765321
Q ss_pred ----------cc----hHHHHHHhCChh------------------------------HHHHHHHHhcccceEEEEcCcE
Q 027516 121 ----------GF----YDECQRKYGNAN------------------------------AWRYCTDVFDYLTLSAIIDGTV 156 (222)
Q Consensus 121 ----------~~----~~~~~~~~~~~~------------------------------~~~~~~~~~~~lP~~~~i~~~~ 156 (222)
.| ..+++.+||... .+..+..|+++||++... +++
T Consensus 80 ~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~-~~~ 158 (235)
T PHA02239 80 NVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKE-DKY 158 (235)
T ss_pred CchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEE-CCE
Confidence 11 134556775210 123445689999999885 569
Q ss_pred EEEecCCCCCCCCHHHHhhhhcccCCCCCCcccccccCCCCCCCCCccCCCCCceecCHHHHH
Q 027516 157 LCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTS 219 (222)
Q Consensus 157 l~vHaGi~~~~~~~~~i~~i~r~~~~~~~~~~~dllWs~p~~~~~~~~~~~g~~~~fG~~~~~ 219 (222)
+|||||+.|..+..+|. ..+++|.|. |.....|.-++|||+++.
T Consensus 159 ifVHAGi~p~~~~~~q~--------------~~~llWiR~-----f~~~~~g~~vV~GHTp~~ 202 (235)
T PHA02239 159 IFSHSGGVSWKPVEEQT--------------IDQLIWSRD-----FQPRKDGFTYVCGHTPTD 202 (235)
T ss_pred EEEeCCCCCCCChhhCC--------------HhHeEEecc-----cCCCCCCcEEEECCCCCC
Confidence 99999999886643332 268999984 334445667899999874
No 22
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.95 E-value=4.3e-28 Score=201.33 Aligned_cols=116 Identities=25% Similarity=0.400 Sum_probs=92.7
Q ss_pred ceeccCcCCHHHHHHHHHhcCCC--------CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhh
Q 027516 46 TVCGDIHGQFHDLMKLFQTGGHV--------PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLT 117 (222)
Q Consensus 46 ~viGDiHG~~~~l~~ll~~~~~~--------~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~ 117 (222)
+||||||||+++|.++|+++++. +.+++|||||||||||+|.+|+++++++.. +.++++|+||||.+++.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHHH
Confidence 69999999999999999999765 468999999999999999999999999864 34799999999999875
Q ss_pred hhhc------ch-----------HHHHHHhC-ChhHHHHHHHHhcccceEEEEcCcEEEEecCCC
Q 027516 118 QVYG------FY-----------DECQRKYG-NANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLS 164 (222)
Q Consensus 118 ~~~~------~~-----------~~~~~~~~-~~~~~~~~~~~~~~lP~~~~i~~~~l~vHaGi~ 164 (222)
...+ |. .++.++++ .....+...+|+++||++... ++++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDL-GGVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEE-CCEEEEECCcC
Confidence 3221 10 12333443 233457788999999999875 56999999986
No 23
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.95 E-value=5.5e-28 Score=202.18 Aligned_cols=123 Identities=24% Similarity=0.485 Sum_probs=97.9
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCCC----------CCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCc
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHVP----------ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHE 112 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~~----------~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE 112 (222)
+|+.||||||||+++|+++|+++++.+ .+++|||||||||||+|.+|++++++++.. .++++|+||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 589999999999999999999997653 468999999999999999999999988643 46999999999
Q ss_pred hhhhhhhhcc-------hHHHHHHhC--ChhHHHHHHHHhcccceEEEEc-CcEEEEecCCCCCC
Q 027516 113 SRQLTQVYGF-------YDECQRKYG--NANAWRYCTDVFDYLTLSAIID-GTVLCVHGGLSPDI 167 (222)
Q Consensus 113 ~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~lP~~~~i~-~~~l~vHaGi~~~~ 167 (222)
.++++...+- ..++..++. .....+...+|++.||+...++ ++++|||||+++..
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~~ 143 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEEM 143 (234)
T ss_pred HHHHHHhcCCCccccCcccchHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChHh
Confidence 9987643221 122333443 2345567889999999988765 47999999987654
No 24
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.95 E-value=6.7e-28 Score=205.57 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=99.2
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCC-CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhc
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYG 121 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~-~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~ 121 (222)
|+++||||||||+++|.++++++++. ..+.+||+||+|||||+|.+|+++++++. .++++|+||||.+++...++
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~----~~~~~VlGNHD~~ll~~~~g 76 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLG----DSAVTVLGNHDLHLLAVAAG 76 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcC----CCeEEEecChhHHHHHhhcC
Confidence 57999999999999999999999875 46899999999999999999999998873 46999999999988765444
Q ss_pred ch----HHHHHHhCChhHHHHHHHHhcccceEEEE-cCcEEEEecCCCCCCCC
Q 027516 122 FY----DECQRKYGNANAWRYCTDVFDYLTLSAII-DGTVLCVHGGLSPDIRT 169 (222)
Q Consensus 122 ~~----~~~~~~~~~~~~~~~~~~~~~~lP~~~~i-~~~~l~vHaGi~~~~~~ 169 (222)
.. .....++-.....+...+|++++|+...+ ++++++||||++|.++.
T Consensus 77 ~~~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~~~ 129 (275)
T PRK00166 77 IKRNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQWDL 129 (275)
T ss_pred CccccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCCCH
Confidence 22 12233332233446678999999998776 45799999999998754
No 25
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.95 E-value=2e-27 Score=201.96 Aligned_cols=165 Identities=22% Similarity=0.306 Sum_probs=121.9
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCC------CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCC-eEEEeCCCCchhh
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHV------PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPA-NITLLRGNHESRQ 115 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~------~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~-~v~~lrGNHE~~~ 115 (222)
.++++|||||||++.|.++++.+... ..+.+|||||||||||+|.+|++++.+++..+|. ++++|+||||.++
T Consensus 2 ~~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~ 81 (304)
T cd07421 2 RVVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAF 81 (304)
T ss_pred ceEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHH
Confidence 36899999999999999999876532 2457999999999999999999999999888875 6899999999886
Q ss_pred hhhhhc-----------------------------------------c----------------------hHHHHHHhCC
Q 027516 116 LTQVYG-----------------------------------------F----------------------YDECQRKYGN 132 (222)
Q Consensus 116 ~~~~~~-----------------------------------------~----------------------~~~~~~~~~~ 132 (222)
+..... | ..+++.+||-
T Consensus 82 l~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv 161 (304)
T cd07421 82 AAFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGV 161 (304)
T ss_pred HhHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCC
Confidence 542111 1 1345666663
Q ss_pred h--------hHHHHHHHHhcccceEEEEcCcE-------------EEEecCCCCCCCCHHHHhhhhc-ccCCCCCCcccc
Q 027516 133 A--------NAWRYCTDVFDYLTLSAIIDGTV-------------LCVHGGLSPDIRTIDQIRVIER-NCEIPHEGPFCD 190 (222)
Q Consensus 133 ~--------~~~~~~~~~~~~lP~~~~i~~~~-------------l~vHaGi~~~~~~~~~i~~i~r-~~~~~~~~~~~d 190 (222)
. .+.+...+|++.||.....+ .+ +|||||+.|..+..+|.+.+.. ....|. .+
T Consensus 162 ~~~~~~l~~avP~~H~~fl~~l~~~~~~~-~~~~~~~~g~~~~~lifVHAGlrPg~pLe~Q~~~L~~~d~~~p~----~~ 236 (304)
T cd07421 162 PHGSSDLIKAVPEEHKKFLRNLVWVHEED-DVCIETEEGLKHCKLIAVHAGLEKSNSVEEQLKLLRTKDTSIPK----IA 236 (304)
T ss_pred CcchHHHHHhCCHHHHHHHHhCCceEEeC-cccccccccccccceEEEEcccCCCCChHHhhhhhhcccccccc----cc
Confidence 2 12356789999999987744 35 9999999999998888876542 233333 48
Q ss_pred cccCCCCCCCCCccCC-----CCCceecCHH
Q 027516 191 LMWSDPEDIETWAVSP-----RGAGWLFGSR 216 (222)
Q Consensus 191 llWs~p~~~~~~~~~~-----~g~~~~fG~~ 216 (222)
++|.|.. |.+.+ .+.-++.||+
T Consensus 237 ~l~~R~~----f~~~~~~~~~~~~~VVhGHt 263 (304)
T cd07421 237 PLSGRKN----VWNIPQELADKKTIVVSGHH 263 (304)
T ss_pred ccccchh----hhcCcccccCCCeEEEECCC
Confidence 9999843 22222 2345788987
No 26
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.95 E-value=3.1e-27 Score=199.62 Aligned_cols=121 Identities=24% Similarity=0.324 Sum_probs=98.7
Q ss_pred cceeccCcCCHHHHHHHHHhcCCC-CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcch
Q 027516 45 VTVCGDIHGQFHDLMKLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFY 123 (222)
Q Consensus 45 i~viGDiHG~~~~l~~ll~~~~~~-~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~ 123 (222)
++||||||||+++|+++|+++++. +.|++||+||+|||||+|.+|++++++++ .++++|+||||.++++..++..
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~ 76 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK 76 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence 589999999999999999999876 46999999999999999999999999886 3699999999999877544422
Q ss_pred ----HHHHHHhCChhHHHHHHHHhcccceEEEEcC-cEEEEecCCCCCCCC
Q 027516 124 ----DECQRKYGNANAWRYCTDVFDYLTLSAIIDG-TVLCVHGGLSPDIRT 169 (222)
Q Consensus 124 ----~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~-~~l~vHaGi~~~~~~ 169 (222)
.+...++-.....+...+|++++|+...+++ ++++||||++|.++.
T Consensus 77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w~~ 127 (257)
T cd07422 77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQWSI 127 (257)
T ss_pred ccccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCCCH
Confidence 1222222222334678899999999988764 799999999999854
No 27
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.95 E-value=1.8e-27 Score=197.17 Aligned_cols=160 Identities=23% Similarity=0.274 Sum_probs=109.1
Q ss_pred CCCcceeccCcCCHHHHHHHHHhcCCC-CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhh
Q 027516 42 NSPVTVCGDIHGQFHDLMKLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVY 120 (222)
Q Consensus 42 ~~~i~viGDiHG~~~~l~~ll~~~~~~-~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~ 120 (222)
.+|++||||||||+++|+++|+++++. ..+++|||||+|||||+|.+|++++++. ++++|+||||.++++...
T Consensus 16 ~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~~~l~~~~ 89 (218)
T PRK11439 16 WRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQMALDALA 89 (218)
T ss_pred CCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHHHHHHHHH
Confidence 469999999999999999999999886 5689999999999999999999999652 588999999999886432
Q ss_pred cchHHHHHHhC--------C--hhHHHHHHHHhcccceEEEEc---CcEEEEecCCCCCCCCHHHHhhhhcccCCCCCCc
Q 027516 121 GFYDECQRKYG--------N--ANAWRYCTDVFDYLTLSAIID---GTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGP 187 (222)
Q Consensus 121 ~~~~~~~~~~~--------~--~~~~~~~~~~~~~lP~~~~i~---~~~l~vHaGi~~~~~~~~~i~~i~r~~~~~~~~~ 187 (222)
+-........| . ...+....+|+++||+...+. +++++||||++... ...+ .+ ..
T Consensus 90 ~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~-~~~~-----~~------~~ 157 (218)
T PRK11439 90 SQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADV-YEWQ-----KD------VD 157 (218)
T ss_pred CCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCc-hhhh-----cc------CC
Confidence 21101111111 1 123345668999999987653 46999999973221 1010 00 02
Q ss_pred ccccccCCCCCCCCCcc-CCCCC-ceecCHHHHH
Q 027516 188 FCDLMWSDPEDIETWAV-SPRGA-GWLFGSRVTS 219 (222)
Q Consensus 188 ~~dllWs~p~~~~~~~~-~~~g~-~~~fG~~~~~ 219 (222)
..+++|+++.....+.. ...+. .++|||+++.
T Consensus 158 ~~~~~w~r~~~~~~~~~~~~~~~~~vv~GHT~~~ 191 (218)
T PRK11439 158 LHQVLWSRSRLGERQKGQGITGADHFWFGHTPLR 191 (218)
T ss_pred ccceEEcChhhhhccccccccCCCEEEECCccCC
Confidence 24679998653222211 12232 4799999864
No 28
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.95 E-value=2e-27 Score=201.45 Aligned_cols=127 Identities=21% Similarity=0.296 Sum_probs=101.4
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCC-CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhc
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYG 121 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~-~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~ 121 (222)
|+++||||||||+++|+++|+++++. +.++++|+||+|||||+|.+|+++++++. .++++|+||||.++++...+
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g 76 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAG 76 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcC
Confidence 57899999999999999999999976 46899999999999999999999998875 35889999999998876555
Q ss_pred ch----HHHHHHhCChhHHHHHHHHhcccceEEEEc-CcEEEEecCCCCCCCCHHHHh
Q 027516 122 FY----DECQRKYGNANAWRYCTDVFDYLTLSAIID-GTVLCVHGGLSPDIRTIDQIR 174 (222)
Q Consensus 122 ~~----~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~-~~~l~vHaGi~~~~~~~~~i~ 174 (222)
+. ......+-.....+...+|++++|+..... .++++||||++|.++. ++..
T Consensus 77 ~~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w~l-~~a~ 133 (279)
T TIGR00668 77 ISRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQWDL-QTAK 133 (279)
T ss_pred CCccCchHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCCcH-HHHH
Confidence 31 122222222344577899999999987654 3699999999999864 4433
No 29
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.93 E-value=1.2e-25 Score=184.62 Aligned_cols=165 Identities=24% Similarity=0.332 Sum_probs=114.3
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCC-CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhc
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYG 121 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~-~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~ 121 (222)
+|+++|||||||+.+|+++++.++.. ..+.++++||+||||+++.++++++.+ .++++|+||||.+.+....+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~ 74 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRA 74 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhC
Confidence 57999999999999999999998764 468899999999999999999998865 25899999999998765433
Q ss_pred --chHHHHHHhCCh--------hHHHHHHHHhcccceEEEEc---CcEEEEecCCCCCCCCHHHHhhhhcccCCCCCCcc
Q 027516 122 --FYDECQRKYGNA--------NAWRYCTDVFDYLTLSAIID---GTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPF 188 (222)
Q Consensus 122 --~~~~~~~~~~~~--------~~~~~~~~~~~~lP~~~~i~---~~~l~vHaGi~~~~~~~~~i~~i~r~~~~~~~~~~ 188 (222)
...+.....+.. ...+...+|++.||+...++ .++++||||+++.... .... + +.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~-~~~~---~--~~~~~~~~ 148 (207)
T cd07424 75 EPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWS-DGVG---A--VTLRPEDI 148 (207)
T ss_pred CCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhh-hhhh---c--cccCcccc
Confidence 112222233321 13455778999999998764 3699999998655321 1100 0 11222345
Q ss_pred cccccCCCCCCCCCccCCCC-CceecCHHHHH
Q 027516 189 CDLMWSDPEDIETWAVSPRG-AGWLFGSRVTS 219 (222)
Q Consensus 189 ~dllWs~p~~~~~~~~~~~g-~~~~fG~~~~~ 219 (222)
.+++|+++...........+ ..++|||+.+.
T Consensus 149 ~~~~w~~~~~~~~~~~~~~~~~~iV~GHTh~~ 180 (207)
T cd07424 149 EELLWSRTRIQKAQTQPIKGVDAVVHGHTPVK 180 (207)
T ss_pred eeeeeccchhhhcCccccCCCCEEEECCCCCC
Confidence 67899986632221122233 34899998764
No 30
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.91 E-value=7.4e-24 Score=175.51 Aligned_cols=160 Identities=21% Similarity=0.194 Sum_probs=105.8
Q ss_pred CCCcceeccCcCCHHHHHHHHHhcCCC-CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhh
Q 027516 42 NSPVTVCGDIHGQFHDLMKLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVY 120 (222)
Q Consensus 42 ~~~i~viGDiHG~~~~l~~ll~~~~~~-~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~ 120 (222)
.+|++||||||||+++|+++++.+.+. ..+++|++||+|||||+|.+|++++.+ .++++|+||||.++++...
T Consensus 14 ~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~~~~~ 87 (218)
T PRK09968 14 YRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMALDAFE 87 (218)
T ss_pred CCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHHHHHh
Confidence 359999999999999999999998865 468999999999999999999998864 2589999999999886432
Q ss_pred cchH--------HHHHHhCCh--hHHHHHHHHhcccceEEEEc---CcEEEEecCCCCCCCCHHHHhhhhcccCCCCCCc
Q 027516 121 GFYD--------ECQRKYGNA--NAWRYCTDVFDYLTLSAIID---GTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGP 187 (222)
Q Consensus 121 ~~~~--------~~~~~~~~~--~~~~~~~~~~~~lP~~~~i~---~~~l~vHaGi~~~~~~~~~i~~i~r~~~~~~~~~ 187 (222)
.-.. +...+.... ........++++||....+. +++++||||++... . .... ...
T Consensus 88 ~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~-~-~~~~----------~~~ 155 (218)
T PRK09968 88 TGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDE-Y-DFGK----------EIA 155 (218)
T ss_pred cCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCch-h-hhcc----------ccc
Confidence 1000 111111111 12233456899999987653 46899999983221 0 1000 011
Q ss_pred ccccccCCCCCCC---CCccC-CCCCceecCHHHHH
Q 027516 188 FCDLMWSDPEDIE---TWAVS-PRGAGWLFGSRVTS 219 (222)
Q Consensus 188 ~~dllWs~p~~~~---~~~~~-~~g~~~~fG~~~~~ 219 (222)
..+++|+++.... .|... .....++|||+.+.
T Consensus 156 ~~~~~w~r~~~~~~~~~~~~~~~~~~~vv~GHTh~~ 191 (218)
T PRK09968 156 ESELLWPVDRVQKSLNGELQQINGADYFIFGHMMFD 191 (218)
T ss_pred hhhceeCcHHHhhCccccccccCCCCEEEECCCCcC
Confidence 2466898655322 23221 22234899998653
No 31
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.89 E-value=5e-23 Score=169.40 Aligned_cols=121 Identities=23% Similarity=0.404 Sum_probs=92.1
Q ss_pred ceeccCcCCHHHHHHHHHhcCC--------CCCCcEEEecccccCCCCcHHHHHHHHHhhhh---CCCeEEEeCCCCchh
Q 027516 46 TVCGDIHGQFHDLMKLFQTGGH--------VPETNYIFMGDFVDRGYNSLEVFTILLLLKAR---YPANITLLRGNHESR 114 (222)
Q Consensus 46 ~viGDiHG~~~~l~~ll~~~~~--------~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~---~p~~v~~lrGNHE~~ 114 (222)
+||||||||+++|.++|+.++. .+.+.+|++||+||||+++.+|+++++++... .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 6899999999999999998875 35689999999999999999999999999754 346799999999999
Q ss_pred hhhhhhcch-HHHHHHhCC-----hhH---HHHHHHHhcccceEEEEcCcEEEEecCCCCCC
Q 027516 115 QLTQVYGFY-DECQRKYGN-----ANA---WRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDI 167 (222)
Q Consensus 115 ~~~~~~~~~-~~~~~~~~~-----~~~---~~~~~~~~~~lP~~~~i~~~~l~vHaGi~~~~ 167 (222)
.+...+.+. ......... ... ...+.+|++.+|+...++ ++++||||++|.+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~~w 141 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGPLW 141 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHHHH
Confidence 886433221 111111100 011 134578999999998875 5999999995543
No 32
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.29 E-value=1.4e-11 Score=94.40 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=56.7
Q ss_pred CCcceeccCcCCHHHH----HHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHH--HHhhhhCCCeEEEeCCCCchhhh
Q 027516 43 SPVTVCGDIHGQFHDL----MKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTIL--LLLKARYPANITLLRGNHESRQL 116 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l----~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l--~~l~~~~p~~v~~lrGNHE~~~~ 116 (222)
+||++|||+|+..... ..+.+.....+.+.+|++||+++++..+....... .......+..+++++||||....
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 4789999999999987 44444444566789999999999999887766543 33344445579999999999865
Q ss_pred hh
Q 027516 117 TQ 118 (222)
Q Consensus 117 ~~ 118 (222)
..
T Consensus 81 ~~ 82 (200)
T PF00149_consen 81 NS 82 (200)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 33
>PRK09453 phosphodiesterase; Provisional
Probab=99.26 E-value=8.3e-12 Score=100.42 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=57.1
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCC--------cHHHHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYN--------SLEVFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~--------s~evl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
||+.++||+||++.++.++++.+...+.+.++++||++++|++ +.++++.+.++. ..+++++||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYA----DKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcC----CceEEEccCCcch
Confidence 6899999999999999999998766677999999999999873 456777665542 3599999999975
Q ss_pred h
Q 027516 115 Q 115 (222)
Q Consensus 115 ~ 115 (222)
.
T Consensus 77 ~ 77 (182)
T PRK09453 77 V 77 (182)
T ss_pred h
Confidence 3
No 34
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.17 E-value=1e-10 Score=91.32 Aligned_cols=86 Identities=26% Similarity=0.302 Sum_probs=64.2
Q ss_pred CcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcch
Q 027516 44 PVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFY 123 (222)
Q Consensus 44 ~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~ 123 (222)
|+.++||+||+...+.++++.+.. .+.++++||++++++.+. +.. ...+++++||||....
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d~ii~~GD~~~~~~~~~--------~~~--~~~~~~V~GNhD~~~~------- 61 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VDLIIHAGDVLYPGPLNE--------LEL--KAPVIAVRGNCDGEVD------- 61 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CCEEEECCccccccccch--------hhc--CCcEEEEeCCCCCcCC-------
Confidence 578999999999999999998765 789999999999998765 111 2359999999998532
Q ss_pred HHHHHHhCChhHHHHHHHHhcccceEEEE--c-CcEEEEecCCCCCC
Q 027516 124 DECQRKYGNANAWRYCTDVFDYLTLSAII--D-GTVLCVHGGLSPDI 167 (222)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~lP~~~~i--~-~~~l~vHaGi~~~~ 167 (222)
+..+|....+ + .+++++||...+..
T Consensus 62 -------------------~~~~p~~~~~~~~g~~i~v~Hg~~~~~~ 89 (155)
T cd00841 62 -------------------FPILPEEAVLEIGGKRIFLTHGHLYGVK 89 (155)
T ss_pred -------------------cccCCceEEEEECCEEEEEECCcccccc
Confidence 3445544333 3 37999999775443
No 35
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.16 E-value=1.2e-10 Score=91.57 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=50.9
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCC-CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHV-PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~-~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
||+.++||+||+..++..+++.+... +.+.++++||++ +.++++.+.++. ..++.++||||..
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~ 64 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE 64 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence 58999999999998888777766655 678999999998 457777776543 2499999999983
No 36
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.10 E-value=2.5e-10 Score=95.41 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=75.2
Q ss_pred CcceeccCcCCHHHHH-HHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhh---h
Q 027516 44 PVTVCGDIHGQFHDLM-KLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQ---V 119 (222)
Q Consensus 44 ~i~viGDiHG~~~~l~-~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~---~ 119 (222)
+|+++|||||++.... ..++ ....|.++++||+++ .+.+++..+.++. ..+++++||||.+.... .
T Consensus 2 rIa~isDiHg~~~~~~~~~l~---~~~pD~Vl~~GDi~~---~~~~~~~~l~~l~----~p~~~V~GNHD~~~~~~~~~k 71 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALH---LLQPDLVLFVGDFGN---ESVQLVRAISSLP----LPKAVILGNHDAWYDATFRKK 71 (238)
T ss_pred EEEEEecCCCCchHHHHHHHh---ccCCCEEEECCCCCc---ChHHHHHHHHhCC----CCeEEEcCCCcccccccccch
Confidence 6899999999987642 2333 334689999999976 4567777766552 34999999999865320 0
Q ss_pred hc-----------------------------------------chH-HHHHHhCChhHHHHHHHHhcccceEEEEcCcEE
Q 027516 120 YG-----------------------------------------FYD-ECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVL 157 (222)
Q Consensus 120 ~~-----------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l 157 (222)
+. +.+ ++...|+..+..+.+...++.++.+.....+++
T Consensus 72 ~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~Vl 151 (238)
T cd07397 72 GDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLIL 151 (238)
T ss_pred HHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeEE
Confidence 00 012 445556655566777788888863333334799
Q ss_pred EEecCCCCC
Q 027516 158 CVHGGLSPD 166 (222)
Q Consensus 158 ~vHaGi~~~ 166 (222)
+.|+++...
T Consensus 152 iaH~~~~G~ 160 (238)
T cd07397 152 LAHNGPSGL 160 (238)
T ss_pred EeCcCCcCC
Confidence 999998544
No 37
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.07 E-value=3.5e-10 Score=87.66 Aligned_cols=61 Identities=26% Similarity=0.443 Sum_probs=47.0
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhh
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQ 115 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~ 115 (222)
||++++||+|++.+.+.++++.+ ...+.++++||++++ .++++.+... .+++++||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 58999999999999999999988 347889999999993 7777777555 4999999999754
No 38
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.00 E-value=7.7e-10 Score=91.97 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=59.5
Q ss_pred CCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 42 NSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 42 ~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
.+++.++||+||++..+.++++.......|.+|++||++++|+...++..++..+.... ..+++++||||..
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~-~pv~~V~GNhD~~ 75 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAH-LPTFYVPGPQDAP 75 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcC-CceEEEcCCCChH
Confidence 36799999999999999999997765667899999999999977777777776665332 2499999999985
No 39
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.85 E-value=3.7e-09 Score=80.84 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=43.4
Q ss_pred CcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcH--HHHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 44 PVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSL--EVFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 44 ~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~--evl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
++.++||+||++. .+...+.|.+|++||+++++..+. +.++++.++. .| .+++++||||..
T Consensus 1 ~i~~isD~H~~~~-------~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~ 63 (135)
T cd07379 1 RFVCISDTHSRHR-------TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLT 63 (135)
T ss_pred CEEEEeCCCCCCC-------cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCc
Confidence 5789999999987 223345688999999999886532 3555555443 12 367899999964
No 40
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=98.74 E-value=1.8e-08 Score=80.41 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=48.0
Q ss_pred cceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCc-HHHHHHHHHhhhhCCCeEEEeCCCCchhhh
Q 027516 45 VTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNS-LEVFTILLLLKARYPANITLLRGNHESRQL 116 (222)
Q Consensus 45 i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s-~evl~~l~~l~~~~p~~v~~lrGNHE~~~~ 116 (222)
|+++||+||++..+.. ..+...+.|.+|++||++++|... .+.+..+.++ +..++++.||||....
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~----~~p~~~v~GNHD~~~~ 67 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEADAVIVAGDITNFGGKEAAVEINLLLAI----GVPVLAVPGNCDTPEI 67 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCCEEEECCCccCcCCHHHHHHHHHHHhc----CCCEEEEcCCCCCHHH
Confidence 5789999999998877 333445568999999999998763 3333444332 3359999999998654
No 41
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.73 E-value=2.8e-08 Score=84.94 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=55.1
Q ss_pred CCCcceeccCcCC----HHHHHHHHHhcCCCCCCcEEEecccccCC--CCcHHHHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 42 NSPVTVCGDIHGQ----FHDLMKLFQTGGHVPETNYIFMGDFVDRG--YNSLEVFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 42 ~~~i~viGDiHG~----~~~l~~ll~~~~~~~~~~~vflGD~vdrG--~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
+.+++++||+|.. ...+.++++++...+.|.++++||++|.+ ....++.+.+..++...| ++.+.||||..
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~p--v~~V~GNHD~~ 125 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAP--TFACFGNHDRP 125 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcCC--EEEecCCCCcc
Confidence 4789999999976 56678888877766778999999999953 233456677777775544 99999999974
No 42
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.69 E-value=8.8e-08 Score=70.78 Aligned_cols=67 Identities=25% Similarity=0.391 Sum_probs=48.6
Q ss_pred ceeccCcCCHHHHHHHH--HhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCc
Q 027516 46 TVCGDIHGQFHDLMKLF--QTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHE 112 (222)
Q Consensus 46 ~viGDiHG~~~~l~~ll--~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE 112 (222)
+++||+|+......... ......+.+.+|++||+++.+....+...............++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce
Confidence 47999999998887764 33344566889999999999888776544322222233446999999999
No 43
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.66 E-value=3.2e-08 Score=81.49 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=54.9
Q ss_pred CCcceeccCcCCHH----HHHHHHHhcCCCCCCcEEEecccccCCCCcH-HHHHHHHHhhhhCCCeEEEeCCCCchhh
Q 027516 43 SPVTVCGDIHGQFH----DLMKLFQTGGHVPETNYIFMGDFVDRGYNSL-EVFTILLLLKARYPANITLLRGNHESRQ 115 (222)
Q Consensus 43 ~~i~viGDiHG~~~----~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~-evl~~l~~l~~~~p~~v~~lrGNHE~~~ 115 (222)
+++++++|+|+... .+.++++.+.....+.++++||+++.+.... .+.+++..+... ..++++.||||...
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~--~~v~~v~GNHD~~~ 77 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKAP--LGVYAVLGNHDYYS 77 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCCC--CCEEEECCCccccc
Confidence 58999999998743 6777887776666788999999999987764 566666655433 34999999999854
No 44
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.61 E-value=2.8e-08 Score=78.42 Aligned_cols=67 Identities=19% Similarity=0.145 Sum_probs=47.4
Q ss_pred cceeccCcCCHHHHHHHH-HhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 45 VTVCGDIHGQFHDLMKLF-QTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 45 i~viGDiHG~~~~l~~ll-~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
+.++||+|++.......+ +.....+.|.++++||+++++..+..+. ++... ..+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~~--~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLLAL--KGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHHhh--cCCccEEEeCCCcceE
Confidence 578999999987776655 3334445688999999999887655543 22222 2234699999999986
No 45
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.60 E-value=2.3e-07 Score=74.59 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=42.8
Q ss_pred CcceeccCc-CCHH-----HHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 44 PVTVCGDIH-GQFH-----DLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 44 ~i~viGDiH-G~~~-----~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
+|.||||.| |... .+.++++ ..+.+.++.+||+++ .++++++..+. ..+++|+||||..
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~---~~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~~ 65 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLV---PGKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDEN 65 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhc---cCCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCcc
Confidence 478999999 6533 2444443 345688999999987 67888776653 2499999999973
No 46
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.52 E-value=1.7e-07 Score=78.73 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=49.1
Q ss_pred CCcceeccCcCCH------HHHHHHHHhcCCCCCCcEEEecccccC--C-----CCcHHHHHHHHHhhhhCCCeEEEeCC
Q 027516 43 SPVTVCGDIHGQF------HDLMKLFQTGGHVPETNYIFMGDFVDR--G-----YNSLEVFTILLLLKARYPANITLLRG 109 (222)
Q Consensus 43 ~~i~viGDiHG~~------~~l~~ll~~~~~~~~~~~vflGD~vdr--G-----~~s~evl~~l~~l~~~~p~~v~~lrG 109 (222)
|++++|||+|... .++.+.++.. ..+.+.++++||++|. | +...++++.+.++... +..++++.|
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~-~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v~~v~G 78 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGE-ARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPCYFMHG 78 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhh-hccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeEEEEeC
Confidence 6899999999542 2345555432 2346899999999985 2 2245677777777643 235999999
Q ss_pred CCchhh
Q 027516 110 NHESRQ 115 (222)
Q Consensus 110 NHE~~~ 115 (222)
|||...
T Consensus 79 NHD~~~ 84 (241)
T PRK05340 79 NRDFLL 84 (241)
T ss_pred CCchhh
Confidence 999743
No 47
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=98.42 E-value=4.4e-07 Score=76.00 Aligned_cols=68 Identities=22% Similarity=0.187 Sum_probs=49.8
Q ss_pred CcceeccCcCCH------HHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 44 PVTVCGDIHGQF------HDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 44 ~i~viGDiHG~~------~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
++++++|+|+++ ..+.++++.+...+.+.+|++||++++.+.+.+++..+.++ .+..++++.||||..
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML 74 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence 578999999753 23566777666566789999999999876666666555443 223599999999964
No 48
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=9.2e-07 Score=74.89 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=50.8
Q ss_pred CCcceeccCcC-C-----------HHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHH----HHHHHHhhhhCCCeEEE
Q 027516 43 SPVTVCGDIHG-Q-----------FHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEV----FTILLLLKARYPANITL 106 (222)
Q Consensus 43 ~~i~viGDiHG-~-----------~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~ev----l~~l~~l~~~~p~~v~~ 106 (222)
|+++.++|+|- . ...|.++++.+.....|.+++.||++|+...+.+. ..++..++...|-.+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 57899999993 2 23456666665555678899999999987655443 34555555433345999
Q ss_pred eCCCCchh
Q 027516 107 LRGNHESR 114 (222)
Q Consensus 107 lrGNHE~~ 114 (222)
+.||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999975
No 49
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.31 E-value=1.5e-06 Score=74.01 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=49.7
Q ss_pred CcceeccCc--C-----------CHHHHHHHHHhcCCCCCCcEEEecccccCCCC-cHHHHHHHHHhhhhCCCeEEEeCC
Q 027516 44 PVTVCGDIH--G-----------QFHDLMKLFQTGGHVPETNYIFMGDFVDRGYN-SLEVFTILLLLKARYPANITLLRG 109 (222)
Q Consensus 44 ~i~viGDiH--G-----------~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~-s~evl~~l~~l~~~~p~~v~~lrG 109 (222)
|+++|||+| . ..+.+.++++.+...+.+.+|++||+++.|.. +.+-+..+.+.-...+-.++.++|
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~G 81 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLG 81 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecC
Confidence 688999999 2 24667788888766667889999999998863 223333333322222235999999
Q ss_pred CCchhh
Q 027516 110 NHESRQ 115 (222)
Q Consensus 110 NHE~~~ 115 (222)
|||...
T Consensus 82 NHD~~~ 87 (267)
T cd07396 82 NHDLYN 87 (267)
T ss_pred cccccc
Confidence 999753
No 50
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.27 E-value=2.8e-06 Score=78.72 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=47.4
Q ss_pred cCCCcceeccCc-CCH----HHHHHHHHhcC---------CCCCCcEEEecccccC-CCCc---------------HHHH
Q 027516 41 VNSPVTVCGDIH-GQF----HDLMKLFQTGG---------HVPETNYIFMGDFVDR-GYNS---------------LEVF 90 (222)
Q Consensus 41 ~~~~i~viGDiH-G~~----~~l~~ll~~~~---------~~~~~~~vflGD~vdr-G~~s---------------~evl 90 (222)
...+++++||+| |.. ..+..+++.+. ....+.+|++||++|. |+++ .++.
T Consensus 242 ~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~ 321 (504)
T PRK04036 242 EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAA 321 (504)
T ss_pred CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHH
Confidence 346799999999 542 23444444433 2234789999999994 3221 1355
Q ss_pred HHHHHhhhhCCCeEEEeCCCCchhh
Q 027516 91 TILLLLKARYPANITLLRGNHESRQ 115 (222)
Q Consensus 91 ~~l~~l~~~~p~~v~~lrGNHE~~~ 115 (222)
.++.++... -.+++++||||...
T Consensus 322 ~~L~~L~~~--i~V~~ipGNHD~~~ 344 (504)
T PRK04036 322 EYLKQIPED--IKIIISPGNHDAVR 344 (504)
T ss_pred HHHHhhhcC--CeEEEecCCCcchh
Confidence 666666433 25999999999754
No 51
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.24 E-value=2.2e-06 Score=75.61 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=49.3
Q ss_pred CCcceeccCc-C-----------CHHHHHHHHHhcCCCCCCcEEEecccccCC-CCcHHHHHHHHH----hhhhCCCeEE
Q 027516 43 SPVTVCGDIH-G-----------QFHDLMKLFQTGGHVPETNYIFMGDFVDRG-YNSLEVFTILLL----LKARYPANIT 105 (222)
Q Consensus 43 ~~i~viGDiH-G-----------~~~~l~~ll~~~~~~~~~~~vflGD~vdrG-~~s~evl~~l~~----l~~~~p~~v~ 105 (222)
||++.+||+| | ....|.++++.+...+.+.++++||++|+. +.+.+++.++.. .-...+-.++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 6889999999 3 124556666666556678999999999985 445555444433 1112234599
Q ss_pred EeCCCCchh
Q 027516 106 LLRGNHESR 114 (222)
Q Consensus 106 ~lrGNHE~~ 114 (222)
+|.||||..
T Consensus 81 ~I~GNHD~~ 89 (340)
T PHA02546 81 VLVGNHDMY 89 (340)
T ss_pred EEccCCCcc
Confidence 999999974
No 52
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.19 E-value=3.1e-06 Score=70.59 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=44.4
Q ss_pred cceeccCcCCH------HHHHHHHHhcCCCCCCcEEEecccccCC-----CC--cHHHHHHHHHhhhhCCCeEEEeCCCC
Q 027516 45 VTVCGDIHGQF------HDLMKLFQTGGHVPETNYIFMGDFVDRG-----YN--SLEVFTILLLLKARYPANITLLRGNH 111 (222)
Q Consensus 45 i~viGDiHG~~------~~l~~ll~~~~~~~~~~~vflGD~vdrG-----~~--s~evl~~l~~l~~~~p~~v~~lrGNH 111 (222)
++++||+|... ..+.+.+..... +.+.++++||++|.. +. ..++.+.+..++.. +..++++.|||
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~-~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~~v~GNH 78 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEAR-KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCYFMHGNR 78 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhc-cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence 46899999643 233444433222 568899999999952 11 13456667666543 34699999999
Q ss_pred chh
Q 027516 112 ESR 114 (222)
Q Consensus 112 E~~ 114 (222)
|..
T Consensus 79 D~~ 81 (231)
T TIGR01854 79 DFL 81 (231)
T ss_pred chh
Confidence 974
No 53
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=98.18 E-value=5.1e-06 Score=69.07 Aligned_cols=67 Identities=24% Similarity=0.346 Sum_probs=47.6
Q ss_pred CcceeccCcCC------------HHHHHHHHHhcCCC--CCCcEEEecccccCCCCc--HHHHHHHHHhhhhCCCeEEEe
Q 027516 44 PVTVCGDIHGQ------------FHDLMKLFQTGGHV--PETNYIFMGDFVDRGYNS--LEVFTILLLLKARYPANITLL 107 (222)
Q Consensus 44 ~i~viGDiHG~------------~~~l~~ll~~~~~~--~~~~~vflGD~vdrG~~s--~evl~~l~~l~~~~p~~v~~l 107 (222)
|++++||+|-. ...+.++++.+... +.+.+|++||+++.|... ..+++.+.++ +..++++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~----~~p~~~v 76 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAAL----PIPVYLL 76 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhc----CCCEEEe
Confidence 57899999954 34677788776654 568899999999987532 1234444433 3349999
Q ss_pred CCCCchh
Q 027516 108 RGNHESR 114 (222)
Q Consensus 108 rGNHE~~ 114 (222)
+||||..
T Consensus 77 ~GNHD~~ 83 (240)
T cd07402 77 PGNHDDR 83 (240)
T ss_pred CCCCCCH
Confidence 9999974
No 54
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.17 E-value=3.6e-06 Score=64.02 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=41.7
Q ss_pred ceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCc
Q 027516 46 TVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHE 112 (222)
Q Consensus 46 ~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE 112 (222)
.||||.||..+.+.++... ..+.+.++++||+. .+++..+.+++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~--~~~~d~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVR--LEGVDLILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhh--CCCCCEEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 4899999998877776664 35668999999983 34566666542 224899999999
No 55
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.13 E-value=4.6e-06 Score=68.25 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=49.6
Q ss_pred CcceeccCc-CC--------------HHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHH----HHHHHHhhhhCCCeE
Q 027516 44 PVTVCGDIH-GQ--------------FHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEV----FTILLLLKARYPANI 104 (222)
Q Consensus 44 ~i~viGDiH-G~--------------~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~ev----l~~l~~l~~~~p~~v 104 (222)
|++.++|+| |. +..|.++++.+.....+.+|++||+++....+.+. ...+.+++. ....+
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 79 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKE-AGIPV 79 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHH-CCCCE
Confidence 578999999 32 22467777776666678899999999987655443 444444431 12359
Q ss_pred EEeCCCCchhhh
Q 027516 105 TLLRGNHESRQL 116 (222)
Q Consensus 105 ~~lrGNHE~~~~ 116 (222)
+++.||||....
T Consensus 80 ~~~~GNHD~~~~ 91 (223)
T cd00840 80 FIIAGNHDSPSR 91 (223)
T ss_pred EEecCCCCCccc
Confidence 999999998654
No 56
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.11 E-value=5.7e-06 Score=65.66 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=45.2
Q ss_pred cceeccCcCCHHHH---------------HHHHHhcCC--CCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEe
Q 027516 45 VTVCGDIHGQFHDL---------------MKLFQTGGH--VPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLL 107 (222)
Q Consensus 45 i~viGDiHG~~~~l---------------~~ll~~~~~--~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~l 107 (222)
+++|+|+|=....- .++++.+.. .+.+.+|++||+++++..+.. ++++.++ +..++++
T Consensus 1 ~~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v 75 (168)
T cd07390 1 IYFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLI 75 (168)
T ss_pred CeEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEE
Confidence 47899999655432 234443332 246899999999999886544 5555443 2359999
Q ss_pred CCCCchhhh
Q 027516 108 RGNHESRQL 116 (222)
Q Consensus 108 rGNHE~~~~ 116 (222)
+||||....
T Consensus 76 ~GNHD~~~~ 84 (168)
T cd07390 76 KGNHDSSLE 84 (168)
T ss_pred eCCCCchhh
Confidence 999997643
No 57
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.09 E-value=8e-06 Score=62.62 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=44.7
Q ss_pred cceeccCcCCHH----------HHHHHHHhcCCCCCCcEEEecccccCCCCc--HHHHHHHHHhhhhCCCeEEEeCCCCc
Q 027516 45 VTVCGDIHGQFH----------DLMKLFQTGGHVPETNYIFMGDFVDRGYNS--LEVFTILLLLKARYPANITLLRGNHE 112 (222)
Q Consensus 45 i~viGDiHG~~~----------~l~~ll~~~~~~~~~~~vflGD~vdrG~~s--~evl~~l~~l~~~~p~~v~~lrGNHE 112 (222)
++.++|+|-... .+.++++.+...+.+.++++||+++.|... .....++..+.... ..++.++||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHD 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCe
Confidence 467899994211 122345555556678999999999988742 23445555554321 25999999999
Q ss_pred h
Q 027516 113 S 113 (222)
Q Consensus 113 ~ 113 (222)
.
T Consensus 80 ~ 80 (144)
T cd07400 80 V 80 (144)
T ss_pred E
Confidence 7
No 58
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=98.07 E-value=8e-06 Score=69.80 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=47.5
Q ss_pred CCCcceeccCcC------------CHHHHHHHHHhcCCC--CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEe
Q 027516 42 NSPVTVCGDIHG------------QFHDLMKLFQTGGHV--PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLL 107 (222)
Q Consensus 42 ~~~i~viGDiHG------------~~~~l~~ll~~~~~~--~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~l 107 (222)
..+++.|+|+|= ..+.|.++++.+... +.+.+|+.||+++.|.. +-...+.+.-...+..++++
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~--~~~~~~~~~l~~l~~Pv~~v 91 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSS--EAYQHFAEGIAPLRKPCVWL 91 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCH--HHHHHHHHHHhhcCCcEEEe
Confidence 478999999991 246678888776432 45889999999998742 22222222222223459999
Q ss_pred CCCCchh
Q 027516 108 RGNHESR 114 (222)
Q Consensus 108 rGNHE~~ 114 (222)
.||||..
T Consensus 92 ~GNHD~~ 98 (275)
T PRK11148 92 PGNHDFQ 98 (275)
T ss_pred CCCCCCh
Confidence 9999973
No 59
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.05 E-value=1e-05 Score=68.96 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=45.5
Q ss_pred cceeccCcCCHHHHHHHHHhc---CCCCCCcEEEecccccCCCCc-HHH----------HHHHHHh--hhhCCCeEEEeC
Q 027516 45 VTVCGDIHGQFHDLMKLFQTG---GHVPETNYIFMGDFVDRGYNS-LEV----------FTILLLL--KARYPANITLLR 108 (222)
Q Consensus 45 i~viGDiHG~~~~l~~ll~~~---~~~~~~~~vflGD~vdrG~~s-~ev----------l~~l~~l--~~~~p~~v~~lr 108 (222)
|+|+||+||+++.+.+.++.. ...+.|.+|++||+-..+..+ .+. .++..-+ ....|--+++|.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 689999999999987654433 234678999999997554433 221 1121111 223455589999
Q ss_pred CCCchh
Q 027516 109 GNHESR 114 (222)
Q Consensus 109 GNHE~~ 114 (222)
||||..
T Consensus 81 GNHE~~ 86 (262)
T cd00844 81 GNHEAS 86 (262)
T ss_pred CCCCCH
Confidence 999974
No 60
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.99 E-value=1.1e-05 Score=63.40 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCCCCCcEEEecccccCCCCcH-HH-HHHHHHhhhh---C-CCeEEEeCCCCchhh
Q 027516 66 GHVPETNYIFMGDFVDRGYNSL-EV-FTILLLLKAR---Y-PANITLLRGNHESRQ 115 (222)
Q Consensus 66 ~~~~~~~~vflGD~vdrG~~s~-ev-l~~l~~l~~~---~-p~~v~~lrGNHE~~~ 115 (222)
...+.+.+|++||+++.+..+. +. ...+..+... . +..++++.||||...
T Consensus 35 ~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 35 WLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred HhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 3445789999999999876432 21 1222222222 1 235999999999853
No 61
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=97.96 E-value=1.8e-05 Score=66.10 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=41.1
Q ss_pred cceeccCcCC---------H-----HHHHHHHHhcCC--CCCCcEEEecccccCCCCc--HHHHHHHHHhhhhCCCeEEE
Q 027516 45 VTVCGDIHGQ---------F-----HDLMKLFQTGGH--VPETNYIFMGDFVDRGYNS--LEVFTILLLLKARYPANITL 106 (222)
Q Consensus 45 i~viGDiHG~---------~-----~~l~~ll~~~~~--~~~~~~vflGD~vdrG~~s--~evl~~l~~l~~~~p~~v~~ 106 (222)
+++++|+|-. + +.+.++.+.+.. ++.|.+|+.||++++++.. .+.+.++.++ |..+++
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l----~~~v~~ 76 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDAL----PGTKVL 76 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhC----CCCeEE
Confidence 5789999965 1 222333333222 2678899999999877533 2344444433 234899
Q ss_pred eCCCCch
Q 027516 107 LRGNHES 113 (222)
Q Consensus 107 lrGNHE~ 113 (222)
|.||||.
T Consensus 77 V~GNHD~ 83 (232)
T cd07393 77 LKGNHDY 83 (232)
T ss_pred EeCCccc
Confidence 9999996
No 62
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.96 E-value=1.6e-05 Score=65.57 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=44.4
Q ss_pred CcceeccCcC----CHHHH----HHHHHhcCCCCCCcEEEecccccCCCCcH---HHHHHHHHhhhhCCCeEEEeCCCCc
Q 027516 44 PVTVCGDIHG----QFHDL----MKLFQTGGHVPETNYIFMGDFVDRGYNSL---EVFTILLLLKARYPANITLLRGNHE 112 (222)
Q Consensus 44 ~i~viGDiHG----~~~~l----~~ll~~~~~~~~~~~vflGD~vdrG~~s~---evl~~l~~l~~~~p~~v~~lrGNHE 112 (222)
+++++||+|- ....+ ..+.+.+...+.+.+|++||+++.+.... ...+.+..+.. .+-.++.++||||
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~-~~~p~~~~~GNHD 80 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDK-AGIPYSVLAGNHD 80 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHH-cCCcEEEECCCCc
Confidence 5789999995 22233 33444444445688999999999988432 23344444431 1223889999999
Q ss_pred hh
Q 027516 113 SR 114 (222)
Q Consensus 113 ~~ 114 (222)
..
T Consensus 81 ~~ 82 (214)
T cd07399 81 LV 82 (214)
T ss_pred ch
Confidence 53
No 63
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=97.95 E-value=2.1e-05 Score=70.84 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=43.0
Q ss_pred CCCcceeccCcCC------------HHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHH
Q 027516 42 NSPVTVCGDIHGQ------------FHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLL 95 (222)
Q Consensus 42 ~~~i~viGDiHG~------------~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~ 95 (222)
.+|+++++|+|-. +.+|.++++.+.....|-+++.||+.|+..-|.+++..+++
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~ 68 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLR 68 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHH
Confidence 4789999999943 55778888887777779999999999999888877644433
No 64
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.95 E-value=2.6e-05 Score=62.35 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=46.6
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhh
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQ 115 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~ 115 (222)
|++.|+||.||...+-.+..+.....+.+.+|.+||++.... +..+..- ...+++.++||.|...
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~-----~~~l~~~---~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFT-----LDALEGG---LAAKLIAVRGNCDGEV 66 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccc-----hHHhhcc---cccceEEEEccCCCcc
Confidence 689999999999976566666555566788999999987543 2222220 1246999999999853
No 65
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.94 E-value=2e-05 Score=62.75 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCCcEEEecccccCCCCcH-HHHHH--HHHhhhhCCCeEEEeCCCCchhh
Q 027516 58 LMKLFQTGGHVPETNYIFMGDFVDRGYNSL-EVFTI--LLLLKARYPANITLLRGNHESRQ 115 (222)
Q Consensus 58 l~~ll~~~~~~~~~~~vflGD~vdrG~~s~-evl~~--l~~l~~~~p~~v~~lrGNHE~~~ 115 (222)
+.++.+.+...+.+.+|++||+++....+. +.... +..+. ..+..+++++||||...
T Consensus 30 ~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 30 LERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLL-AKDVDVILIRGNHDGGL 89 (172)
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhc-cCCCeEEEEcccCccch
Confidence 445555555556789999999998654332 22221 11121 23346999999999853
No 66
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.94 E-value=2.4e-05 Score=65.16 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=45.4
Q ss_pred CCcceeccCc-CCHHH----------------HHHHHHhcCCCCCCcEEEecccccCCCC---cHHHHHHHHHhhhhCCC
Q 027516 43 SPVTVCGDIH-GQFHD----------------LMKLFQTGGHVPETNYIFMGDFVDRGYN---SLEVFTILLLLKARYPA 102 (222)
Q Consensus 43 ~~i~viGDiH-G~~~~----------------l~~ll~~~~~~~~~~~vflGD~vdrG~~---s~evl~~l~~l~~~~p~ 102 (222)
.++.+|+|+| |.-.. +.++.+.+...+.+.+|++||+.+.... ..++.+++.++. .
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~----~ 90 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTF----R 90 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcC----C
Confidence 6799999999 43222 2333343344556899999999976554 233444554432 3
Q ss_pred eEEEeCCCCchhh
Q 027516 103 NITLLRGNHESRQ 115 (222)
Q Consensus 103 ~v~~lrGNHE~~~ 115 (222)
.+++++||||...
T Consensus 91 ~v~~V~GNHD~~~ 103 (225)
T TIGR00024 91 DLILIRGNHDALI 103 (225)
T ss_pred cEEEECCCCCCcc
Confidence 6999999999753
No 67
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=97.93 E-value=2.6e-05 Score=63.38 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=44.0
Q ss_pred CCcceeccCcCCHH------------HHHHHHHhcCCCCCCcEEEecccccCCCCc---HHHHHHHHHhhhhCCCeEEEe
Q 027516 43 SPVTVCGDIHGQFH------------DLMKLFQTGGHVPETNYIFMGDFVDRGYNS---LEVFTILLLLKARYPANITLL 107 (222)
Q Consensus 43 ~~i~viGDiHG~~~------------~l~~ll~~~~~~~~~~~vflGD~vdrG~~s---~evl~~l~~l~~~~p~~v~~l 107 (222)
.++++++|+|-... .+..+.+.+...+.+.+|++||+++.+... .+.+..+.+......-.++++
T Consensus 3 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 82 (199)
T cd07383 3 FKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAAT 82 (199)
T ss_pred eEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEE
Confidence 47899999996322 122232333344568899999999976653 444444433322222348999
Q ss_pred CCCCc
Q 027516 108 RGNHE 112 (222)
Q Consensus 108 rGNHE 112 (222)
.||||
T Consensus 83 ~GNHD 87 (199)
T cd07383 83 FGNHD 87 (199)
T ss_pred CccCC
Confidence 99999
No 68
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.90 E-value=3.7e-05 Score=65.20 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=51.7
Q ss_pred CCcceeccCcCC------HHHHHHHHHhcCCCCCCcEEEecccccCCCCc-HH-HHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 43 SPVTVCGDIHGQ------FHDLMKLFQTGGHVPETNYIFMGDFVDRGYNS-LE-VFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 43 ~~i~viGDiHG~------~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s-~e-vl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
++++.|+|+|-. ...+.++++.+...+.|.+|+.||+.+.|... .+ ..++|.. ...+..++.++||||..
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~--~~~~~~~~~vpGNHD~~ 78 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLAR--LELPAPVIVVPGNHDAR 78 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHHHHHHHHHHHhh--ccCCCceEeeCCCCcCC
Confidence 478999999977 34567777888866779999999999996421 11 2333331 14455699999999987
Q ss_pred hhh
Q 027516 115 QLT 117 (222)
Q Consensus 115 ~~~ 117 (222)
..+
T Consensus 79 ~~~ 81 (301)
T COG1409 79 VVN 81 (301)
T ss_pred chH
Confidence 554
No 69
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.86 E-value=2.5e-05 Score=70.59 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=47.6
Q ss_pred CCcceeccCcCCH--------HH----HHHHHHhcCCCCCCcEEEecccccCCCCcHHH----HHHHHHhhhhCCCeEEE
Q 027516 43 SPVTVCGDIHGQF--------HD----LMKLFQTGGHVPETNYIFMGDFVDRGYNSLEV----FTILLLLKARYPANITL 106 (222)
Q Consensus 43 ~~i~viGDiHG~~--------~~----l~~ll~~~~~~~~~~~vflGD~vdrG~~s~ev----l~~l~~l~~~~p~~v~~ 106 (222)
|+++.++|+|-.. .+ +..+.+.+.....|.+|+.||++|++..+... ..++..++.. +-.+++
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~-~~~v~~ 79 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQT-GCQLVV 79 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhc-CCcEEE
Confidence 5789999999421 11 34455555556678999999999998655432 2344445432 235999
Q ss_pred eCCCCchh
Q 027516 107 LRGNHESR 114 (222)
Q Consensus 107 lrGNHE~~ 114 (222)
|.||||..
T Consensus 80 I~GNHD~~ 87 (407)
T PRK10966 80 LAGNHDSV 87 (407)
T ss_pred EcCCCCCh
Confidence 99999975
No 70
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=97.78 E-value=4.1e-05 Score=65.94 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=52.9
Q ss_pred CCCcceeccCcCCHHH--HHHHHHhcCCCCCCcEEEecccccC-CCC-cHHHHHHHHHhhhhCCCeEEEeCCCCchhhh
Q 027516 42 NSPVTVCGDIHGQFHD--LMKLFQTGGHVPETNYIFMGDFVDR-GYN-SLEVFTILLLLKARYPANITLLRGNHESRQL 116 (222)
Q Consensus 42 ~~~i~viGDiHG~~~~--l~~ll~~~~~~~~~~~vflGD~vdr-G~~-s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~ 116 (222)
..+|.-++|+|-+... ..+.+..+.....|-+++.||++++ .+. ...+...+..|+... .++++.||||...-
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~~~~--gv~av~GNHd~~~~ 120 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDRPPGVAALALFLAKLKAPL--GVFAVLGNHDYGVD 120 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCCCCCHHHHHHHHHhhhccC--CEEEEecccccccc
Confidence 3569999999987655 3344444444444899999999995 444 456788888777554 59999999998643
No 71
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.75 E-value=5.9e-05 Score=63.95 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=43.5
Q ss_pred cceeccCcCCHH------HH-HHHHHhcCCCCCCcEEEecccccCCCCc--------H---HHHHHHHHhhhhCCCeEEE
Q 027516 45 VTVCGDIHGQFH------DL-MKLFQTGGHVPETNYIFMGDFVDRGYNS--------L---EVFTILLLLKARYPANITL 106 (222)
Q Consensus 45 i~viGDiHG~~~------~l-~~ll~~~~~~~~~~~vflGD~vdrG~~s--------~---evl~~l~~l~~~~p~~v~~ 106 (222)
++.++|+|-... .. ..+++.+...+.+.+|++||++|++... . +.++.+.......+..++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 467899996321 12 3355556556678999999999986521 1 2223222222222346999
Q ss_pred eCCCCchh
Q 027516 107 LRGNHESR 114 (222)
Q Consensus 107 lrGNHE~~ 114 (222)
++||||..
T Consensus 82 v~GNHD~~ 89 (256)
T cd07401 82 IRGNHDLF 89 (256)
T ss_pred eCCCCCcC
Confidence 99999985
No 72
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.75 E-value=7.3e-05 Score=62.74 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=40.8
Q ss_pred ceeccCc--CCH---HHHHHHHHhcCCC-----CCCcEEEecccccCCCC------------c----HHHHHHHHHhhhh
Q 027516 46 TVCGDIH--GQF---HDLMKLFQTGGHV-----PETNYIFMGDFVDRGYN------------S----LEVFTILLLLKAR 99 (222)
Q Consensus 46 ~viGDiH--G~~---~~l~~ll~~~~~~-----~~~~~vflGD~vdrG~~------------s----~evl~~l~~l~~~ 99 (222)
++|||+| +.. ..+..+++.+... +.+.+|++||++|+... . ..+.+++.++...
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 6899999 331 2233444433322 23889999999997310 0 1244455555432
Q ss_pred CCCeEEEeCCCCchh
Q 027516 100 YPANITLLRGNHESR 114 (222)
Q Consensus 100 ~p~~v~~lrGNHE~~ 114 (222)
-.++++.||||..
T Consensus 82 --~~v~~ipGNHD~~ 94 (243)
T cd07386 82 --IKIIIIPGNHDAV 94 (243)
T ss_pred --CeEEEeCCCCCcc
Confidence 3599999999985
No 73
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.71 E-value=6.8e-05 Score=63.40 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=44.1
Q ss_pred CcceeccCcCCH----------------HHHHHHHHhcCCC--CCCcEEEecccccCCCCcH-------HHHHHHHHhhh
Q 027516 44 PVTVCGDIHGQF----------------HDLMKLFQTGGHV--PETNYIFMGDFVDRGYNSL-------EVFTILLLLKA 98 (222)
Q Consensus 44 ~i~viGDiHG~~----------------~~l~~ll~~~~~~--~~~~~vflGD~vdrG~~s~-------evl~~l~~l~~ 98 (222)
+++++||+|-.. ..++++++.+... ..+.+|++||+++.|.... +..+.+..+.
T Consensus 6 ~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~- 84 (262)
T cd07395 6 YFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLD- 84 (262)
T ss_pred EEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhcc-
Confidence 578888888653 2345666666543 5578999999999887541 1222222221
Q ss_pred hCCCeEEEeCCCCchh
Q 027516 99 RYPANITLLRGNHESR 114 (222)
Q Consensus 99 ~~p~~v~~lrGNHE~~ 114 (222)
.+-.++.++||||..
T Consensus 85 -~~vp~~~i~GNHD~~ 99 (262)
T cd07395 85 -PDIPLVCVCGNHDVG 99 (262)
T ss_pred -CCCcEEEeCCCCCCC
Confidence 122499999999973
No 74
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=97.71 E-value=8.2e-05 Score=60.80 Aligned_cols=69 Identities=22% Similarity=0.201 Sum_probs=39.0
Q ss_pred ceeccCcCC---HH---HHHHHHHhcCCCCCCcEEEecccccCC--CC-----c-HHHHHHHHHhhhhCCCeEEEeCCCC
Q 027516 46 TVCGDIHGQ---FH---DLMKLFQTGGHVPETNYIFMGDFVDRG--YN-----S-LEVFTILLLLKARYPANITLLRGNH 111 (222)
Q Consensus 46 ~viGDiHG~---~~---~l~~ll~~~~~~~~~~~vflGD~vdrG--~~-----s-~evl~~l~~l~~~~p~~v~~lrGNH 111 (222)
++|||+|-. .. .+...++.....+.+.+|++||++|.. +. . .+.+..+.++. .....++.+.|||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~v~GNH 79 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA-DRGTRVYYVPGNH 79 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH-HCCCeEEEECCCc
Confidence 589999932 11 122333222123568999999999842 11 1 12222333332 2234699999999
Q ss_pred chhh
Q 027516 112 ESRQ 115 (222)
Q Consensus 112 E~~~ 115 (222)
|...
T Consensus 80 D~~~ 83 (217)
T cd07398 80 DFLL 83 (217)
T ss_pred hHHH
Confidence 9854
No 75
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.00035 Score=58.13 Aligned_cols=99 Identities=19% Similarity=0.326 Sum_probs=58.1
Q ss_pred ceeccCcCC------HHHHHHHHHhcCCCCCCcEEEecccccC--CCC--c---HHHHHHHHHhhhhCCCeEEEeCCCCc
Q 027516 46 TVCGDIHGQ------FHDLMKLFQTGGHVPETNYIFMGDFVDR--GYN--S---LEVFTILLLLKARYPANITLLRGNHE 112 (222)
Q Consensus 46 ~viGDiHG~------~~~l~~ll~~~~~~~~~~~vflGD~vdr--G~~--s---~evl~~l~~l~~~~p~~v~~lrGNHE 112 (222)
+.|||+|=. -+.|.+.|+.... ..+.++++||++|- |.+ + .+|...|..+..+ ..+++++.||||
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~-G~~v~~i~GN~D 78 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAA-QADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARK-GTRVYYIHGNHD 78 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccc-cCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhc-CCeEEEecCchH
Confidence 468999954 2334555554332 55899999999863 322 2 3455555555433 347999999999
Q ss_pred hhhhhhhhcchHHHHHHhCChhHHHHHHHHhcccceEEE---EcCcEEEEecCC
Q 027516 113 SRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAI---IDGTVLCVHGGL 163 (222)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~---i~~~~l~vHaGi 163 (222)
. .+...+ ....|. +.-+|-... -+++++++||-.
T Consensus 79 f-ll~~~f------~~~~g~----------~~l~~~~~~~~l~g~~~Ll~HGD~ 115 (237)
T COG2908 79 F-LLGKRF------AQEAGG----------MTLLPDPIVLDLYGKRILLAHGDT 115 (237)
T ss_pred H-HHHHHH------HhhcCc----------eEEcCcceeeeecCcEEEEEeCCc
Confidence 4 332211 122331 233343333 257899999955
No 76
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=97.68 E-value=3e-05 Score=58.59 Aligned_cols=101 Identities=46% Similarity=0.856 Sum_probs=73.8
Q ss_pred hhhcchHHHHHHhCChhHHHH---HHHHhcccceEEEEcC-cEEEEecCCCCCC-CCHHHHhhhhccc--CCCCCCcccc
Q 027516 118 QVYGFYDECQRKYGNANAWRY---CTDVFDYLTLSAIIDG-TVLCVHGGLSPDI-RTIDQIRVIERNC--EIPHEGPFCD 190 (222)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~lP~~~~i~~-~~l~vHaGi~~~~-~~~~~i~~i~r~~--~~~~~~~~~d 190 (222)
..+++..++...++....|.. ..++++.+|..+.+.+ .++|.|+++++.. ....+++.+.|.. ..+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~ 84 (155)
T COG0639 5 ALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPHAGHTHD 84 (155)
T ss_pred hhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCCcccccc
Confidence 334455555555544334555 8999999999988877 8999999999975 6778888888776 6667777777
Q ss_pred cccCCCCC--CCCCccCCCCCceecCHHHHH
Q 027516 191 LMWSDPED--IETWAVSPRGAGWLFGSRVTS 219 (222)
Q Consensus 191 llWs~p~~--~~~~~~~~~g~~~~fG~~~~~ 219 (222)
.+|+++.. ...|.++.+|.+..+ ++.+.
T Consensus 85 ~~~~~~~~~~~~~w~~~~~g~~~~~-~~~~~ 114 (155)
T COG0639 85 LLWSDPDGGDRRIWNPGPRGVPRDG-GDVTA 114 (155)
T ss_pred ccCCCCCCCcccccccCCCCCCccc-cchhh
Confidence 79999884 678888888777555 34333
No 77
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=97.67 E-value=3.7e-05 Score=65.89 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=44.4
Q ss_pred CCCcceeccCcC----CHHHHHHHHHhcCCCCCCcEEEecccccCCCCc-----HHHHHHHHHhhhhCCCeEEEeCCCCc
Q 027516 42 NSPVTVCGDIHG----QFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNS-----LEVFTILLLLKARYPANITLLRGNHE 112 (222)
Q Consensus 42 ~~~i~viGDiHG----~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s-----~evl~~l~~l~~~~p~~v~~lrGNHE 112 (222)
+-+++++||.|. ....+.++.+. ..+.+-++++||+++.+... -..+..+..+....| ++.++||||
T Consensus 4 ~~~f~v~gD~~~~~~~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P--~~~~~GNHD 79 (294)
T cd00839 4 PFKFAVFGDMGQNTNNSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVP--YMVTPGNHE 79 (294)
T ss_pred cEEEEEEEECCCCCCCcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCC--cEEcCcccc
Confidence 357899999995 23333444433 24567899999999644332 233444444444455 899999999
Q ss_pred hhh
Q 027516 113 SRQ 115 (222)
Q Consensus 113 ~~~ 115 (222)
...
T Consensus 80 ~~~ 82 (294)
T cd00839 80 ADY 82 (294)
T ss_pred ccc
Confidence 753
No 78
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=97.64 E-value=0.00017 Score=59.49 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=56.5
Q ss_pred CCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccc--cCCCCcHHHHH-HHHHhhhhCCCeEEEeCCCCchhhh
Q 027516 42 NSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFV--DRGYNSLEVFT-ILLLLKARYPANITLLRGNHESRQL 116 (222)
Q Consensus 42 ~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~v--drG~~s~evl~-~l~~l~~~~p~~v~~lrGNHE~~~~ 116 (222)
++++..++|+||.++.+.+++........|.+|+.||+. +.|+.-....+ .+..++.. --.++.++||-|...+
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~-~~~v~avpGNcD~~~v 79 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKEL-GIPVLAVPGNCDPPEV 79 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhc-CCeEEEEcCCCChHHH
Confidence 578999999999999999999988877789999999999 88775433222 13334322 2359999999998754
No 79
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.47 E-value=0.00025 Score=57.76 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=35.8
Q ss_pred CCCCCcEEEecccccCCCCcH--HHHHHHHHhhhhCC----CeEEEeCCCCchh
Q 027516 67 HVPETNYIFMGDFVDRGYNSL--EVFTILLLLKARYP----ANITLLRGNHESR 114 (222)
Q Consensus 67 ~~~~~~~vflGD~vdrG~~s~--evl~~l~~l~~~~p----~~v~~lrGNHE~~ 114 (222)
..+.+.+||+||++|.|+.+. +..+.+..++..++ ..+++|.||||.-
T Consensus 40 ~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 40 FVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred ccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 345789999999999999653 36676666665432 2489999999974
No 80
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.45 E-value=0.0003 Score=54.87 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=44.4
Q ss_pred CcceeccCcC------------CHHHHHH-HHHhcC--CCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeC
Q 027516 44 PVTVCGDIHG------------QFHDLMK-LFQTGG--HVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLR 108 (222)
Q Consensus 44 ~i~viGDiHG------------~~~~l~~-ll~~~~--~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lr 108 (222)
.++++||.|= +.+.... ++.... ..|+|.+.+|||+.-.-....+..+.+..| |++.++|+
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~ 80 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVP 80 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHc----CCcEEEee
Confidence 4788999993 3334322 332221 236789999999986555555555555544 57899999
Q ss_pred CCCchh
Q 027516 109 GNHESR 114 (222)
Q Consensus 109 GNHE~~ 114 (222)
||||-.
T Consensus 81 GNhDk~ 86 (186)
T COG4186 81 GNHDKC 86 (186)
T ss_pred CCCCCC
Confidence 999974
No 81
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00035 Score=62.61 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=51.9
Q ss_pred CCcceeccCcCC-------------HHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHH-hhhhC--CCeEEE
Q 027516 43 SPVTVCGDIHGQ-------------FHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLL-LKARY--PANITL 106 (222)
Q Consensus 43 ~~i~viGDiHG~-------------~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~-l~~~~--p~~v~~ 106 (222)
+|+..++|.|=- +.+|..+++.+.....|-+|+.||+.|++.-|.+++..+.+ ++... .-.+++
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 578899999954 44556677766666678999999999998877765444333 22222 114999
Q ss_pred eCCCCchhh
Q 027516 107 LRGNHESRQ 115 (222)
Q Consensus 107 lrGNHE~~~ 115 (222)
|.||||...
T Consensus 81 I~GNHD~~~ 89 (390)
T COG0420 81 IAGNHDSPS 89 (390)
T ss_pred ecCCCCchh
Confidence 999999763
No 82
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.42 E-value=0.00038 Score=55.48 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=33.2
Q ss_pred hcCCCCCCcEEEecccccCCCCcH--H---HHHHHHHhhhhC-----CCeEEEeCCCCchhh
Q 027516 64 TGGHVPETNYIFMGDFVDRGYNSL--E---VFTILLLLKARY-----PANITLLRGNHESRQ 115 (222)
Q Consensus 64 ~~~~~~~~~~vflGD~vdrG~~s~--e---vl~~l~~l~~~~-----p~~v~~lrGNHE~~~ 115 (222)
.+...+.+.+|++||++|.+.... + .+..+.++.... +..+++|.||||...
T Consensus 40 ~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 40 ALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred HHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 334456789999999999887532 2 333333322111 345999999999854
No 83
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.39 E-value=0.0004 Score=54.27 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=48.2
Q ss_pred ceeccCcCCHHHHHHHHHhcCC--CCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCc
Q 027516 46 TVCGDIHGQFHDLMKLFQTGGH--VPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHE 112 (222)
Q Consensus 46 ~viGDiHG~~~~l~~ll~~~~~--~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE 112 (222)
.|+||+||+++.+.+-++++.. .+-|.++++||+..-...+.+.-.+. .=.++.|--.+++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~-~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYK-DGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHh-cCCccCCCCEEEECCCCC
Confidence 4899999999999776665432 24488999999987666554444433 344456767999999998
No 84
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=97.35 E-value=0.00033 Score=50.49 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccc
Q 027516 3 LDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPV 41 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~ 41 (222)
+++|++.|++++.||...+.+|+.++.++|+++||++++
T Consensus 57 v~~mie~FK~~K~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 57 VKAMIEWFKNQKKLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp HHHHHHHHHCT----HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 689999999999999999999999999999999999863
No 85
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.32 E-value=0.00028 Score=59.20 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=45.0
Q ss_pred CcceeccCcCCH---------HHHHHHHHhcCCCCCC-cEEEecccccCCCCcH-----HHHHHHHHhhhhCCCeEEEeC
Q 027516 44 PVTVCGDIHGQF---------HDLMKLFQTGGHVPET-NYIFMGDFVDRGYNSL-----EVFTILLLLKARYPANITLLR 108 (222)
Q Consensus 44 ~i~viGDiHG~~---------~~l~~ll~~~~~~~~~-~~vflGD~vdrG~~s~-----evl~~l~~l~~~~p~~v~~lr 108 (222)
+++.++|+||.+ ..+.++++++.....+ .++..||+++..+.+. .+++.+..+. . .++..
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g----~-d~~~~ 76 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG----Y-DAVTI 76 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC----C-CEEee
Confidence 578999999886 5667777776654444 5566899999877643 4555554442 2 33556
Q ss_pred CCCchh
Q 027516 109 GNHESR 114 (222)
Q Consensus 109 GNHE~~ 114 (222)
||||.-
T Consensus 77 GNHe~d 82 (252)
T cd00845 77 GNHEFD 82 (252)
T ss_pred cccccc
Confidence 999963
No 86
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.24 E-value=0.00023 Score=58.91 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=44.7
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHH--------------------------HHHHHh
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVF--------------------------TILLLL 96 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl--------------------------~~l~~l 96 (222)
.++.+++|.||+.+.+.++.+.+.....|-+||+||++-....+.+-. .++..|
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L 85 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL 85 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence 578999999999999999999888778899999999986554333222 333334
Q ss_pred hhhCCCeEEEeCCCCchh
Q 027516 97 KARYPANITLLRGNHESR 114 (222)
Q Consensus 97 ~~~~p~~v~~lrGNHE~~ 114 (222)
.. .+-.+++|+||||..
T Consensus 86 ~~-~~~p~~~vPG~~Dap 102 (255)
T PF14582_consen 86 GE-LGVPVFVVPGNMDAP 102 (255)
T ss_dssp HC-C-SEEEEE--TTS-S
T ss_pred Hh-cCCcEEEecCCCCch
Confidence 32 233599999999984
No 87
>PLN02533 probable purple acid phosphatase
Probab=96.94 E-value=0.00088 Score=60.97 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=44.2
Q ss_pred CCCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcH---HHHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 42 NSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSL---EVFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 42 ~~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~---evl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
+-+++++||+|-. ......++.+.....+-++++||+++-+.+.. +-.+++..+....| ++.+.||||..
T Consensus 139 ~~~f~v~GDlG~~-~~~~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P--~m~~~GNHE~~ 211 (427)
T PLN02533 139 PIKFAVSGDLGTS-EWTKSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRP--WMVTHGNHELE 211 (427)
T ss_pred CeEEEEEEeCCCC-cccHHHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCc--eEEeCcccccc
Confidence 4578999999632 22223444444445688999999997543321 13344444444455 89999999975
No 88
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=96.91 E-value=0.00095 Score=57.02 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=42.2
Q ss_pred CcceeccCcCCH----------------HHHHHHHHhcCCCCCCcEEE-ecccccCCCCc-----------HHHHHHHHH
Q 027516 44 PVTVCGDIHGQF----------------HDLMKLFQTGGHVPETNYIF-MGDFVDRGYNS-----------LEVFTILLL 95 (222)
Q Consensus 44 ~i~viGDiHG~~----------------~~l~~ll~~~~~~~~~~~vf-lGD~vdrG~~s-----------~evl~~l~~ 95 (222)
+|+.++|+||++ ..+..++++......+.+++ .||+++..+.+ ..+++.+..
T Consensus 2 ~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~ 81 (277)
T cd07410 2 RILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNA 81 (277)
T ss_pred eEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHh
Confidence 578899999986 34566777665444455555 79999865422 235555555
Q ss_pred hhhhCCCeEEEeCCCCchh
Q 027516 96 LKARYPANITLLRGNHESR 114 (222)
Q Consensus 96 l~~~~p~~v~~lrGNHE~~ 114 (222)
+. . -++..||||..
T Consensus 82 ~g---~--d~~~lGNHe~d 95 (277)
T cd07410 82 LG---Y--DAGTLGNHEFN 95 (277)
T ss_pred cC---C--CEEeecccCcc
Confidence 43 2 35566999953
No 89
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=96.56 E-value=0.0045 Score=52.53 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=39.5
Q ss_pred CcceeccCcCC--H--HHHHHH-HHhcCCCCCCcEEEecccc-cCCCCcH------HHHHHHHH-hhhhCCCeEEEeCCC
Q 027516 44 PVTVCGDIHGQ--F--HDLMKL-FQTGGHVPETNYIFMGDFV-DRGYNSL------EVFTILLL-LKARYPANITLLRGN 110 (222)
Q Consensus 44 ~i~viGDiHG~--~--~~l~~l-l~~~~~~~~~~~vflGD~v-drG~~s~------evl~~l~~-l~~~~p~~v~~lrGN 110 (222)
+++++||.-.. . ..+.+. .+.+...+.+-+|++||++ +-|..+. +.+..+.. +.... .++.++||
T Consensus 2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~--P~~~v~GN 79 (277)
T cd07378 2 RFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQV--PWYLVLGN 79 (277)
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcC--CeEEecCC
Confidence 57889998764 1 233333 3333334568899999987 5553221 22222221 22223 49999999
Q ss_pred Cchh
Q 027516 111 HESR 114 (222)
Q Consensus 111 HE~~ 114 (222)
||..
T Consensus 80 HD~~ 83 (277)
T cd07378 80 HDYS 83 (277)
T ss_pred cccC
Confidence 9975
No 90
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.48 E-value=0.0021 Score=54.67 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=28.1
Q ss_pred CCCcEEEecccccCCCCcHH-----HHHHHHHhhhhCC--CeEEEeCCCCch
Q 027516 69 PETNYIFMGDFVDRGYNSLE-----VFTILLLLKARYP--ANITLLRGNHES 113 (222)
Q Consensus 69 ~~~~~vflGD~vdrG~~s~e-----vl~~l~~l~~~~p--~~v~~lrGNHE~ 113 (222)
+.+.+||+||++|.|..... -+..+.++-...+ ..++.|.||||.
T Consensus 45 ~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDi 96 (257)
T cd08163 45 KPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDI 96 (257)
T ss_pred CCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCccc
Confidence 57899999999999875321 1222222211111 248999999996
No 91
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.45 E-value=0.0071 Score=50.51 Aligned_cols=72 Identities=25% Similarity=0.331 Sum_probs=46.4
Q ss_pred cCCCcceeccCcCCHHHH----------------HHHHH-hcCCCCCCcEEEecccccCCCCc-----HHHHHHHHHhhh
Q 027516 41 VNSPVTVCGDIHGQFHDL----------------MKLFQ-TGGHVPETNYIFMGDFVDRGYNS-----LEVFTILLLLKA 98 (222)
Q Consensus 41 ~~~~i~viGDiHG~~~~l----------------~~ll~-~~~~~~~~~~vflGD~vdrG~~s-----~evl~~l~~l~~ 98 (222)
...++.|++|+|=-+... .+.+. .+.....+++|++||+-.-.+.+ .++-.++..+..
T Consensus 18 ~~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~ 97 (235)
T COG1407 18 PLGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDE 97 (235)
T ss_pred ccCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhcc
Confidence 357899999999655433 23333 22334568999999998654442 344444444432
Q ss_pred hCCCeEEEeCCCCchhh
Q 027516 99 RYPANITLLRGNHESRQ 115 (222)
Q Consensus 99 ~~p~~v~~lrGNHE~~~ 115 (222)
. .+++++||||...
T Consensus 98 ~---evi~i~GNHD~~i 111 (235)
T COG1407 98 R---EVIIIRGNHDNGI 111 (235)
T ss_pred C---cEEEEeccCCCcc
Confidence 2 4999999999853
No 92
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=96.37 E-value=0.0094 Score=48.48 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=38.6
Q ss_pred cCcCCHHHHHHHHHhcC-CCCCCcEEEecccccCCCCcHH-HHHHHHHhhhhC---------------------CCeEEE
Q 027516 50 DIHGQFHDLMKLFQTGG-HVPETNYIFMGDFVDRGYNSLE-VFTILLLLKARY---------------------PANITL 106 (222)
Q Consensus 50 DiHG~~~~l~~ll~~~~-~~~~~~~vflGD~vdrG~~s~e-vl~~l~~l~~~~---------------------p~~v~~ 106 (222)
|++|+=.=|.+.++.+. ....+.++||||++|.|--+-+ --+........+ ...++.
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~ 103 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLIN 103 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEE
Confidence 44555444455555443 3356889999999998753322 223333333322 134789
Q ss_pred eCCCCchh
Q 027516 107 LRGNHESR 114 (222)
Q Consensus 107 lrGNHE~~ 114 (222)
|.||||.-
T Consensus 104 V~GNHDIG 111 (193)
T cd08164 104 IAGNHDVG 111 (193)
T ss_pred ECCcccCC
Confidence 99999983
No 93
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.31 E-value=0.0015 Score=59.16 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=95.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhCCCccccC----CCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcH
Q 027516 12 EGQHLLEDELQLLCEYVKEILIEESNVQPVN----SPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSL 87 (222)
Q Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~----~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~ 87 (222)
-.+.++..++..+++-+.+.+..+|++.... .-.+.++|.||...++.++++.- .....-|++-|++++++....
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 3677889999999999999999999875442 45789999999999988888753 222356888999999999999
Q ss_pred HHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcchHHHHHH
Q 027516 88 EVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 129 (222)
Q Consensus 88 evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~~~~~~ 129 (222)
+.+.-+...+...|....+.|++||...+...++|..++...
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~ 131 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTP 131 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 999999999999999999999999998776666655443333
No 94
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=96.29 E-value=0.0053 Score=51.95 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=41.8
Q ss_pred CcceeccCcCC----------HHHHHHHHHhcCCCCCCcEEEecccccCCCCc-----HHHHHHHHHhhhhCCCeEEEeC
Q 027516 44 PVTVCGDIHGQ----------FHDLMKLFQTGGHVPETNYIFMGDFVDRGYNS-----LEVFTILLLLKARYPANITLLR 108 (222)
Q Consensus 44 ~i~viGDiHG~----------~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s-----~evl~~l~~l~~~~p~~v~~lr 108 (222)
+++.++|+||+ +..+..++++....+++.++..||+++..+.+ ..+++.+..+. ..+ +..
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~d~-~~~ 76 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----YDA-VTP 76 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----CcE-Ecc
Confidence 57789999997 44566677666544455666689999876533 23444444332 234 456
Q ss_pred CCCch
Q 027516 109 GNHES 113 (222)
Q Consensus 109 GNHE~ 113 (222)
||||.
T Consensus 77 GNHef 81 (257)
T cd07408 77 GNHEF 81 (257)
T ss_pred ccccc
Confidence 99996
No 95
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=96.05 E-value=0.01 Score=47.55 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=29.9
Q ss_pred CCCCcEEEeccccc--CCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhh
Q 027516 68 VPETNYIFMGDFVD--RGYNSLEVFTILLLLKARYPANITLLRGNHESRQ 115 (222)
Q Consensus 68 ~~~~~~vflGD~vd--rG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~ 115 (222)
.++|.++.-||+-- |=++..+-+.++-.| |+.-+++|||||++.
T Consensus 42 ~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw 87 (230)
T COG1768 42 SPEDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWW 87 (230)
T ss_pred ChhhEEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCcccc
Confidence 35566777899842 233444456666554 788999999999874
No 96
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=96.04 E-value=0.0092 Score=55.97 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=38.2
Q ss_pred CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhh
Q 027516 69 PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQ 118 (222)
Q Consensus 69 ~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~ 118 (222)
--|++-++||+.||||.+-.+++.|+..- +|=.-.||||.-.+..
T Consensus 184 ~VDhLHIvGDIyDRGp~pd~ImD~Lm~~h-----svDIQWGNHDIlWMGA 228 (640)
T PF06874_consen 184 AVDHLHIVGDIYDRGPRPDKIMDRLMNYH-----SVDIQWGNHDILWMGA 228 (640)
T ss_pred hhhheeecccccCCCCChhHHHHHHhcCC-----CccccccchHHHHHHH
Confidence 35889999999999999999999998653 6888999999876543
No 97
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=95.79 E-value=0.013 Score=50.46 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=42.0
Q ss_pred CcceeccCcCCHH--------------HHHHHHHhcCCCC-CCcEEEecccccCCCC-c-----HHHHHHHHHhhhhCCC
Q 027516 44 PVTVCGDIHGQFH--------------DLMKLFQTGGHVP-ETNYIFMGDFVDRGYN-S-----LEVFTILLLLKARYPA 102 (222)
Q Consensus 44 ~i~viGDiHG~~~--------------~l~~ll~~~~~~~-~~~~vflGD~vdrG~~-s-----~evl~~l~~l~~~~p~ 102 (222)
+++.++|+||++. .+..++++..... +..++..||++...+. + ..+++.+.++..
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~---- 77 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGV---- 77 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCC----
Confidence 5788999998744 3666776665433 3455668999976654 2 245666655542
Q ss_pred eEEEeCCCCch
Q 027516 103 NITLLRGNHES 113 (222)
Q Consensus 103 ~v~~lrGNHE~ 113 (222)
-.+..||||.
T Consensus 78 -Da~t~GNHef 87 (288)
T cd07412 78 -DASAVGNHEF 87 (288)
T ss_pred -eeeeeccccc
Confidence 2456699995
No 98
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=95.62 E-value=0.014 Score=49.48 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=38.9
Q ss_pred CcceeccCcCCH----------------------HHHHHHHHhcCCC-CCCcE-EEecccccCCCCc-----HHHHHHHH
Q 027516 44 PVTVCGDIHGQF----------------------HDLMKLFQTGGHV-PETNY-IFMGDFVDRGYNS-----LEVFTILL 94 (222)
Q Consensus 44 ~i~viGDiHG~~----------------------~~l~~ll~~~~~~-~~~~~-vflGD~vdrG~~s-----~evl~~l~ 94 (222)
.++.++|+||++ ..+..++++.... ..+.+ +..||+++..+.+ ..+++.+.
T Consensus 2 ~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l~ 81 (264)
T cd07411 2 TLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDALN 81 (264)
T ss_pred EEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHHH
Confidence 356778888863 4455666665544 44445 4589999876543 24455555
Q ss_pred HhhhhCCCeEEEeCCCCchh
Q 027516 95 LLKARYPANITLLRGNHESR 114 (222)
Q Consensus 95 ~l~~~~p~~v~~lrGNHE~~ 114 (222)
.+. ..+ +. ||||..
T Consensus 82 ~~g----~da-~~-GNHefd 95 (264)
T cd07411 82 ALG----VDA-MV-GHWEFT 95 (264)
T ss_pred hhC----CeE-Ee-cccccc
Confidence 432 223 33 999963
No 99
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=95.35 E-value=0.028 Score=48.35 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=45.1
Q ss_pred CCcceeccCcCC--HHHHHHHHHhcCCC--CCCcEEEecccccCCCCcH--H------HHHHHHHhhhhCCC-eEEEeCC
Q 027516 43 SPVTVCGDIHGQ--FHDLMKLFQTGGHV--PETNYIFMGDFVDRGYNSL--E------VFTILLLLKARYPA-NITLLRG 109 (222)
Q Consensus 43 ~~i~viGDiHG~--~~~l~~ll~~~~~~--~~~~~vflGD~vdrG~~s~--e------vl~~l~~l~~~~p~-~v~~lrG 109 (222)
.+..-.|+-.-+ ...+..+++.+... +.+-+|+.||+++.+.... + .-.+...++...|. .++.+.|
T Consensus 38 ~~~~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~G 117 (296)
T cd00842 38 PPAGPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALG 117 (296)
T ss_pred CCCCCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCC
Confidence 345556776522 34566777766544 6688999999998876431 1 12223333333332 4999999
Q ss_pred CCchhh
Q 027516 110 NHESRQ 115 (222)
Q Consensus 110 NHE~~~ 115 (222)
|||..-
T Consensus 118 NHD~~p 123 (296)
T cd00842 118 NHDSYP 123 (296)
T ss_pred CCCCCc
Confidence 999864
No 100
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=95.28 E-value=0.028 Score=47.61 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=41.9
Q ss_pred cceeccCc----------CCHHHHHHHHHhcCCCCCC-cEEEecccccCCCC-----cHHHHHHHHHhhhhCCCeEEEeC
Q 027516 45 VTVCGDIH----------GQFHDLMKLFQTGGHVPET-NYIFMGDFVDRGYN-----SLEVFTILLLLKARYPANITLLR 108 (222)
Q Consensus 45 i~viGDiH----------G~~~~l~~ll~~~~~~~~~-~~vflGD~vdrG~~-----s~evl~~l~~l~~~~p~~v~~lr 108 (222)
++-+.|+| |.+..+..++++......+ .++..||+++..+. ...+++.+..+. --+...
T Consensus 3 il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~ 77 (257)
T cd07406 3 ILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACF 77 (257)
T ss_pred EEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEee
Confidence 45566666 4567777888776644444 55558999987653 245666665554 245678
Q ss_pred CCCch
Q 027516 109 GNHES 113 (222)
Q Consensus 109 GNHE~ 113 (222)
||||.
T Consensus 78 GNHef 82 (257)
T cd07406 78 GNHEF 82 (257)
T ss_pred ccccc
Confidence 99996
No 101
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=95.05 E-value=0.038 Score=47.41 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=39.8
Q ss_pred CcceeccCcCCH---------------------HHHHHHHHhcCCCCCCcEEE-ecccccCCCCc-----HHHHHHHHHh
Q 027516 44 PVTVCGDIHGQF---------------------HDLMKLFQTGGHVPETNYIF-MGDFVDRGYNS-----LEVFTILLLL 96 (222)
Q Consensus 44 ~i~viGDiHG~~---------------------~~l~~ll~~~~~~~~~~~vf-lGD~vdrG~~s-----~evl~~l~~l 96 (222)
+++.++|+||++ ..+..++++......+.+++ .||++...+.+ ..+++.+..+
T Consensus 2 ~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~ 81 (281)
T cd07409 2 TILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL 81 (281)
T ss_pred EEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc
Confidence 467789999864 45566666655433344444 89999876532 3345555444
Q ss_pred hhhCCCeEEEeCCCCchh
Q 027516 97 KARYPANITLLRGNHESR 114 (222)
Q Consensus 97 ~~~~p~~v~~lrGNHE~~ 114 (222)
. ..+ +..||||.-
T Consensus 82 g----~D~-~~lGNHefd 94 (281)
T cd07409 82 G----YDA-MTLGNHEFD 94 (281)
T ss_pred C----CCE-EEecccccc
Confidence 3 124 445999963
No 102
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.01 E-value=0.023 Score=58.00 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=44.4
Q ss_pred CCcceeccCcCCH---HHHHHHHHhcCCCCCCcEEE-ecccccCCCCc-----HHHHHHHHHhhhhCCCeEEEeCCCCch
Q 027516 43 SPVTVCGDIHGQF---HDLMKLFQTGGHVPETNYIF-MGDFVDRGYNS-----LEVFTILLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 43 ~~i~viGDiHG~~---~~l~~ll~~~~~~~~~~~vf-lGD~vdrG~~s-----~evl~~l~~l~~~~p~~v~~lrGNHE~ 113 (222)
.+++.++|+||.+ ..+..+++++.....+.+++ .||+++..+.+ ..+++.+..+. --++..||||.
T Consensus 661 l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~GNHEf 735 (1163)
T PRK09419 661 LTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFGNHEF 735 (1163)
T ss_pred EEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEeccccc
Confidence 4689999999874 55566666655444455555 89999877644 24555555443 24569999995
No 103
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=94.72 E-value=0.046 Score=48.23 Aligned_cols=73 Identities=23% Similarity=0.402 Sum_probs=49.1
Q ss_pred CCcceeccCcCCHHHHH---HHHHhcCCCCCCcEEEeccccc-CCC---CcHHH---HHHHH------HhhhhCCCeEEE
Q 027516 43 SPVTVCGDIHGQFHDLM---KLFQTGGHVPETNYIFMGDFVD-RGY---NSLEV---FTILL------LLKARYPANITL 106 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~---~ll~~~~~~~~~~~vflGD~vd-rG~---~s~ev---l~~l~------~l~~~~p~~v~~ 106 (222)
|||.|-|--||.++.+- ...++.+..+-|.++++||+=. |.. +++.| ...+. +-...+|--.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 68999999999999886 5556677778899999999842 211 22222 11111 112234545789
Q ss_pred eCCCCchhh
Q 027516 107 LRGNHESRQ 115 (222)
Q Consensus 107 lrGNHE~~~ 115 (222)
|-||||.+.
T Consensus 81 IGGNHEAsn 89 (456)
T KOG2863|consen 81 IGGNHEASN 89 (456)
T ss_pred ecCchHHHH
Confidence 999999874
No 104
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=94.39 E-value=0.076 Score=47.84 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=47.0
Q ss_pred CCCcceeccCc--CC---------HHH------HHHHHHhcC-CCCCCcEEEecccccCCCCc--HHHHHHHHHhhhhCC
Q 027516 42 NSPVTVCGDIH--GQ---------FHD------LMKLFQTGG-HVPETNYIFMGDFVDRGYNS--LEVFTILLLLKARYP 101 (222)
Q Consensus 42 ~~~i~viGDiH--G~---------~~~------l~~ll~~~~-~~~~~~~vflGD~vdrG~~s--~evl~~l~~l~~~~p 101 (222)
..++..|+|-| |+ ++. +.+.++... .-+++-++||||++|-|... -|--+....++..++
T Consensus 48 ~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~ 127 (410)
T KOG3662|consen 48 STKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFG 127 (410)
T ss_pred ceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhC
Confidence 35788899877 31 122 123333322 23567899999999988764 345555666666665
Q ss_pred C----eEEEeCCCCch
Q 027516 102 A----NITLLRGNHES 113 (222)
Q Consensus 102 ~----~v~~lrGNHE~ 113 (222)
. .++.+.||||.
T Consensus 128 ~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 128 RKGNIKVIYIAGNHDI 143 (410)
T ss_pred CCCCCeeEEeCCcccc
Confidence 4 58999999996
No 105
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=94.35 E-value=0.065 Score=45.78 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=49.2
Q ss_pred CCcceeccCcCC--HHHHHHHHHhcCCC-CCCcEEEecccccCC-CCcHHHHHHHHHhhhhCCCeEEEeCCCCch
Q 027516 43 SPVTVCGDIHGQ--FHDLMKLFQTGGHV-PETNYIFMGDFVDRG-YNSLEVFTILLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 43 ~~i~viGDiHG~--~~~l~~ll~~~~~~-~~~~~vflGD~vdrG-~~s~evl~~l~~l~~~~p~~v~~lrGNHE~ 113 (222)
||+.++|||=|. ...+...|..+... +.|-+|..||....| .-+.++.+.|.+.-. .++.+ |||+.
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~ 70 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTW 70 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhc
Confidence 689999999999 56777888776644 346677789998765 456778888876653 46655 99996
No 106
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=93.92 E-value=0.12 Score=45.49 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=41.4
Q ss_pred CcceeccCcCCHH-----------------HHH--HHH-HhcCCCCCCcEEEecccccCCCCcHH---HHHHHHHhhhhC
Q 027516 44 PVTVCGDIHGQFH-----------------DLM--KLF-QTGGHVPETNYIFMGDFVDRGYNSLE---VFTILLLLKARY 100 (222)
Q Consensus 44 ~i~viGDiHG~~~-----------------~l~--~ll-~~~~~~~~~~~vflGD~vdrG~~s~e---vl~~l~~l~~~~ 100 (222)
+|+.+.|+|=... ++. ..+ +.+.....|.+||+||.|+. ..... ++....+-.+.+
T Consensus 55 KIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g-~~t~Da~~sl~kAvaP~I~~ 133 (379)
T KOG1432|consen 55 KILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFG-HSTQDAATSLMKAVAPAIDR 133 (379)
T ss_pred EEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccc-cccHhHHHHHHHHhhhHhhc
Confidence 6889999994433 221 111 12234456899999999986 33333 333222222222
Q ss_pred CCeEEEeCCCCchhh
Q 027516 101 PANITLLRGNHESRQ 115 (222)
Q Consensus 101 p~~v~~lrGNHE~~~ 115 (222)
.=-...+.||||...
T Consensus 134 ~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 134 KIPWAAVLGNHDDES 148 (379)
T ss_pred CCCeEEEeccccccc
Confidence 223788999999853
No 107
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=93.31 E-value=0.083 Score=48.09 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=35.5
Q ss_pred CCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhh
Q 027516 70 ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQL 116 (222)
Q Consensus 70 ~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~ 116 (222)
.|++-++||+-||||++-.+++.|...- ++-.=.||||...+
T Consensus 191 VDhLHiVGDIyDRGP~pd~Imd~L~~yh-----svDiQWGNHDilWm 232 (648)
T COG3855 191 VDHLHIVGDIYDRGPYPDKIMDTLINYH-----SVDIQWGNHDILWM 232 (648)
T ss_pred hhheeeecccccCCCCchHHHHHHhhcc-----cccccccCcceEEe
Confidence 4789999999999999999999887664 57778999997544
No 108
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=92.81 E-value=0.11 Score=48.36 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=45.4
Q ss_pred cCCCcceeccCcCCHH---------------HHHHHHHhcCCCCCCcEEE-ecccccCCC------CcHHHHHHHHHhhh
Q 027516 41 VNSPVTVCGDIHGQFH---------------DLMKLFQTGGHVPETNYIF-MGDFVDRGY------NSLEVFTILLLLKA 98 (222)
Q Consensus 41 ~~~~i~viGDiHG~~~---------------~l~~ll~~~~~~~~~~~vf-lGD~vdrG~------~s~evl~~l~~l~~ 98 (222)
.+-+|+-+.|+||++. ....+.++........+++ .||+++..+ .....++.+-.++
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~- 103 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG- 103 (517)
T ss_pred eeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhcC-
Confidence 3467899999999988 3344444444333344444 899999843 3345677776665
Q ss_pred hCCCeEEEeCCCCchh
Q 027516 99 RYPANITLLRGNHESR 114 (222)
Q Consensus 99 ~~p~~v~~lrGNHE~~ 114 (222)
-=....||||.-
T Consensus 104 ----yDa~tiGNHEFd 115 (517)
T COG0737 104 ----YDAMTLGNHEFD 115 (517)
T ss_pred ----CcEEeecccccc
Confidence 245788999974
No 109
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=92.58 E-value=0.16 Score=44.36 Aligned_cols=65 Identities=20% Similarity=0.084 Sum_probs=40.5
Q ss_pred CcceeccCcCCH------HHHHHHHHhcCC-----CCCCcEEEecccccCCCC-------------cHHHHHHHHHhhhh
Q 027516 44 PVTVCGDIHGQF------HDLMKLFQTGGH-----VPETNYIFMGDFVDRGYN-------------SLEVFTILLLLKAR 99 (222)
Q Consensus 44 ~i~viGDiHG~~------~~l~~ll~~~~~-----~~~~~~vflGD~vdrG~~-------------s~evl~~l~~l~~~ 99 (222)
.|+-+.|+||++ ..+..++++... .++..++-.||.+.-++. ...+++++-++.
T Consensus 2 ~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 2 QLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred eEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 367789999985 344445554432 233445558998875442 334566666655
Q ss_pred CCCeEEEeCCCCch
Q 027516 100 YPANITLLRGNHES 113 (222)
Q Consensus 100 ~p~~v~~lrGNHE~ 113 (222)
--.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 24578999995
No 110
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=92.35 E-value=0.2 Score=40.71 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=40.8
Q ss_pred cceeccCcCC-----HHHHHHHHHhcC-CCCCCcEEEecccccCCCCcH----------HHHHHHHHhhhhC-----CCe
Q 027516 45 VTVCGDIHGQ-----FHDLMKLFQTGG-HVPETNYIFMGDFVDRGYNSL----------EVFTILLLLKARY-----PAN 103 (222)
Q Consensus 45 i~viGDiHG~-----~~~l~~ll~~~~-~~~~~~~vflGD~vdrG~~s~----------evl~~l~~l~~~~-----p~~ 103 (222)
|++++|+|-. ++.|.++|+.+. ..+.+.+|++|++++.-.... .....+..+.... --+
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 4567777754 677788888777 666789999999999632211 1111222222111 136
Q ss_pred EEEeCCCCchhhh
Q 027516 104 ITLLRGNHESRQL 116 (222)
Q Consensus 104 v~~lrGNHE~~~~ 116 (222)
++++.|+||....
T Consensus 81 vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 81 VVLVPGPNDPTSS 93 (209)
T ss_dssp EEEE--TTCTT-S
T ss_pred EEEeCCCcccccc
Confidence 9999999998644
No 111
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=92.21 E-value=0.14 Score=44.09 Aligned_cols=66 Identities=21% Similarity=0.138 Sum_probs=36.8
Q ss_pred CcceeccCcCCHHH----------HHHHHHhcCC-----CCCCcEEEecccccCCCCc-----HHHHHHHHHhhhhCCCe
Q 027516 44 PVTVCGDIHGQFHD----------LMKLFQTGGH-----VPETNYIFMGDFVDRGYNS-----LEVFTILLLLKARYPAN 103 (222)
Q Consensus 44 ~i~viGDiHG~~~~----------l~~ll~~~~~-----~~~~~~vflGD~vdrG~~s-----~evl~~l~~l~~~~p~~ 103 (222)
.|+.++|+||++.. +..++++... .++..++-.||.+...+.+ ..+++.+..+.. .
T Consensus 2 tIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~----D 77 (285)
T cd07405 2 TILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGY----D 77 (285)
T ss_pred EEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCC----c
Confidence 46788999997522 4455554432 2233344489998433322 334555555542 2
Q ss_pred EEEeCCCCchh
Q 027516 104 ITLLRGNHESR 114 (222)
Q Consensus 104 v~~lrGNHE~~ 114 (222)
+ +..||||.-
T Consensus 78 a-~~~GNHEfD 87 (285)
T cd07405 78 A-MAVGNHEFD 87 (285)
T ss_pred E-Eeecccccc
Confidence 4 355999963
No 112
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=92.06 E-value=0.35 Score=44.97 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=42.1
Q ss_pred CCCcceeccCcC------------CHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHh
Q 027516 42 NSPVTVCGDIHG------------QFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLL 96 (222)
Q Consensus 42 ~~~i~viGDiHG------------~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l 96 (222)
..||.|-.|+|= .+.+|..+|+.+.....|.++.-||++.-..-|..+|-...++
T Consensus 13 tirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~l 79 (646)
T KOG2310|consen 13 TIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLEL 79 (646)
T ss_pred ceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHH
Confidence 458999999994 3667888998877777788888999998877776665444433
No 113
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=91.54 E-value=0.19 Score=43.34 Aligned_cols=67 Identities=21% Similarity=0.141 Sum_probs=38.8
Q ss_pred CCcceeccCcCCHH-------------HHHHHHHhc----CCC-CCCcEEEecccccCCCCc-------HHHHHHHHHhh
Q 027516 43 SPVTVCGDIHGQFH-------------DLMKLFQTG----GHV-PETNYIFMGDFVDRGYNS-------LEVFTILLLLK 97 (222)
Q Consensus 43 ~~i~viGDiHG~~~-------------~l~~ll~~~----~~~-~~~~~vflGD~vdrG~~s-------~evl~~l~~l~ 97 (222)
-+|+-+.|+||++. .+.++.+.+ ... ++..++-.||.+..-+.+ ..+++++-.+.
T Consensus 6 ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~mg 85 (282)
T cd07407 6 INFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRMMP 85 (282)
T ss_pred EEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHhcC
Confidence 36788999998753 222332222 222 223344489998765432 23455555553
Q ss_pred hhCCCeEEEeCCCCchh
Q 027516 98 ARYPANITLLRGNHESR 114 (222)
Q Consensus 98 ~~~p~~v~~lrGNHE~~ 114 (222)
--.+..||||.-
T Consensus 86 -----yDa~tlGNHEFd 97 (282)
T cd07407 86 -----YDLLTIGNHELY 97 (282)
T ss_pred -----CcEEeecccccC
Confidence 356789999983
No 114
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=91.38 E-value=4.1 Score=34.66 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=27.4
Q ss_pred CcEEEecccccCCCCc------------------HHHH----HHHHHhhhhCCCeEEEeCCCCchhhhh
Q 027516 71 TNYIFMGDFVDRGYNS------------------LEVF----TILLLLKARYPANITLLRGNHESRQLT 117 (222)
Q Consensus 71 ~~~vflGD~vdrG~~s------------------~evl----~~l~~l~~~~p~~v~~lrGNHE~~~~~ 117 (222)
.++|+.||.|+.-.+. .+.+ .+|.++...- .|.+++||||-....
T Consensus 44 ~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i--~V~imPG~~Dp~~~~ 110 (257)
T cd07387 44 VRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSV--PVDLMPGEFDPANHS 110 (257)
T ss_pred EEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCC--eEEECCCCCCccccc
Confidence 4799999999864321 2222 2333333222 499999999986543
No 115
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=91.33 E-value=0.23 Score=47.77 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=44.2
Q ss_pred ccCCCcceeccCcCCHH----------------HHHHHHHhcCCC-CCCcEEEecccccCCCCcH-------------HH
Q 027516 40 PVNSPVTVCGDIHGQFH----------------DLMKLFQTGGHV-PETNYIFMGDFVDRGYNSL-------------EV 89 (222)
Q Consensus 40 ~~~~~i~viGDiHG~~~----------------~l~~ll~~~~~~-~~~~~vflGD~vdrG~~s~-------------ev 89 (222)
....+|+-+.|+||++. .+..++++.... ++..+|-.||++...|.+- -+
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~ 102 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPV 102 (649)
T ss_pred CceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchH
Confidence 34568999999999863 344555554422 3444555899987655421 25
Q ss_pred HHHHHHhhhhCCCeEEEeCCCCch
Q 027516 90 FTILLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 90 l~~l~~l~~~~p~~v~~lrGNHE~ 113 (222)
++.+-.+. --....||||.
T Consensus 103 i~amN~lg-----yDa~tlGNHEF 121 (649)
T PRK09420 103 YKAMNTLD-----YDVGNLGNHEF 121 (649)
T ss_pred HHHHHhcC-----CcEEeccchhh
Confidence 56555554 35678999995
No 116
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=91.26 E-value=0.22 Score=47.66 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=41.0
Q ss_pred CCcceeccCcCCHH----------------HHHHHHHhcCCC-CCCcEEEecccccCCCCc-------------HHHHHH
Q 027516 43 SPVTVCGDIHGQFH----------------DLMKLFQTGGHV-PETNYIFMGDFVDRGYNS-------------LEVFTI 92 (222)
Q Consensus 43 ~~i~viGDiHG~~~----------------~l~~ll~~~~~~-~~~~~vflGD~vdrG~~s-------------~evl~~ 92 (222)
-+|+-+.|+||++. .+..++++.... ++..++-.||.+...+.+ .-+++.
T Consensus 3 l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~~ 82 (626)
T TIGR01390 3 LRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYKA 82 (626)
T ss_pred EEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHHH
Confidence 36788999999864 344555554322 334455589998855432 234555
Q ss_pred HHHhhhhCCCeEEEeCCCCch
Q 027516 93 LLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 93 l~~l~~~~p~~v~~lrGNHE~ 113 (222)
+-.+. --....||||.
T Consensus 83 mN~lg-----yDa~tlGNHEF 98 (626)
T TIGR01390 83 MNLLK-----YDVGNLGNHEF 98 (626)
T ss_pred HhhcC-----ccEEecccccc
Confidence 55554 34578999995
No 117
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=91.09 E-value=0.22 Score=51.06 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=41.9
Q ss_pred CCCcceeccCcCCH----------------HHHHHHHHhcCCCCCCcEEE-ecccccCCCC--------------cHHHH
Q 027516 42 NSPVTVCGDIHGQF----------------HDLMKLFQTGGHVPETNYIF-MGDFVDRGYN--------------SLEVF 90 (222)
Q Consensus 42 ~~~i~viGDiHG~~----------------~~l~~ll~~~~~~~~~~~vf-lGD~vdrG~~--------------s~evl 90 (222)
.-+|+.++|+||++ ..+..++++........+++ .||.+...+- ...++
T Consensus 41 ~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~i 120 (1163)
T PRK09419 41 NIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPMI 120 (1163)
T ss_pred EEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcCHHH
Confidence 35799999999985 33455565554333344555 8999986551 12345
Q ss_pred HHHHHhhhhCCCeEEEeCCCCch
Q 027516 91 TILLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 91 ~~l~~l~~~~p~~v~~lrGNHE~ 113 (222)
..+..+. --....||||.
T Consensus 121 ~~mN~lg-----yDa~~lGNHEF 138 (1163)
T PRK09419 121 KAMNALG-----YDAGTLGNHEF 138 (1163)
T ss_pred HHHhhcC-----ccEEeeccccc
Confidence 5554443 34567999995
No 118
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=91.08 E-value=0.42 Score=40.62 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=45.3
Q ss_pred CcceeccCcCCH--HHHHHHHHhcCCC-CCCcEEEecccccCC-CCcHHHHHHHHHhhhhCCCeEEEeCCCCch
Q 027516 44 PVTVCGDIHGQF--HDLMKLFQTGGHV-PETNYIFMGDFVDRG-YNSLEVFTILLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 44 ~i~viGDiHG~~--~~l~~ll~~~~~~-~~~~~vflGD~vdrG-~~s~evl~~l~~l~~~~p~~v~~lrGNHE~ 113 (222)
|+.+||||=|.. ..+.+.|..+... +.|-+|..||..--| .-+.++.+.+..+.. .+..+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-ccccc
Confidence 578999999985 4456677666433 346666689988666 356778887777653 35555 99985
No 119
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=0.75 Score=41.99 Aligned_cols=69 Identities=28% Similarity=0.428 Sum_probs=52.1
Q ss_pred CCCcceeccCcCCHHHHHHHHHhcCCC--CCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCC
Q 027516 42 NSPVTVCGDIHGQFHDLMKLFQTGGHV--PETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNH 111 (222)
Q Consensus 42 ~~~i~viGDiHG~~~~l~~ll~~~~~~--~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNH 111 (222)
..+|.|+||+-|+++.|.+-.+++... |-+.++++|++.+--.++-|++.+....+ ..|--++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~-~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTK-KVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCc-cCceeEEEecCCC
Confidence 479999999999999998777766543 34889999999987567778777765443 4565577776665
No 120
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=88.57 E-value=0.47 Score=43.32 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=42.3
Q ss_pred CCCcceeccCcCCHHHHHHHHHhcCCC-CCCcEEEecccccC-CCC---cHHHHHHHHHhhhhCCCeEEEeCCCCchhhh
Q 027516 42 NSPVTVCGDIHGQFHDLMKLFQTGGHV-PETNYIFMGDFVDR-GYN---SLEVFTILLLLKARYPANITLLRGNHESRQL 116 (222)
Q Consensus 42 ~~~i~viGDiHG~~~~l~~ll~~~~~~-~~~~~vflGD~vdr-G~~---s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~ 116 (222)
+.++.|+||+==.... ...+...... +.+-++++||+.-- +.. .-+-.+++.-+...-| ..+.-||||.-..
T Consensus 147 ~~~~~i~GDlG~~~~~-~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vP--ymv~~GNHE~d~~ 223 (452)
T KOG1378|consen 147 PTRAAIFGDMGCTEPY-TSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVP--YMVCSGNHEIDWP 223 (452)
T ss_pred ceeEEEEccccccccc-cchHhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCc--eEEecccccccCC
Confidence 4679999999533322 2222222222 36788889997632 222 1233445554544445 7789999998654
No 121
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.56 E-value=1.9 Score=33.64 Aligned_cols=99 Identities=19% Similarity=0.317 Sum_probs=63.8
Q ss_pred cceeccCcC--CHHHHHHHHHhcCCCCC-CcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhc
Q 027516 45 VTVCGDIHG--QFHDLMKLFQTGGHVPE-TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYG 121 (222)
Q Consensus 45 i~viGDiHG--~~~~l~~ll~~~~~~~~-~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~ 121 (222)
+.++||+|= ...+|-.-++++-.+.. ..++++|++.. .|+++++..+. ..++.+||--|.-
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlcs-----~e~~dylk~l~----~dvhiVrGeFD~~------- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLCS-----KESYDYLKTLS----SDVHIVRGEFDEN------- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcch-----HHHHHHHHhhC----CCcEEEecccCcc-------
Confidence 578999994 33444344444333333 68999999864 58999998886 4799999977663
Q ss_pred chHHHHHHhCChhHHHHHHHHhcccceEEEE--cC-cEEEEecCCCCCCCCHHHHhhhhcccC
Q 027516 122 FYDECQRKYGNANAWRYCTDVFDYLTLSAII--DG-TVLCVHGGLSPDIRTIDQIRVIERNCE 181 (222)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i--~~-~~l~vHaGi~~~~~~~~~i~~i~r~~~ 181 (222)
.+| |...++ +. ++-++||-.---+...+.+..++|...
T Consensus 67 ------~~y----------------P~~kvvtvGqfkIG~chGhqViP~gd~~sL~~LaRqld 107 (183)
T KOG3325|consen 67 ------LKY----------------PENKVVTVGQFKIGLCHGHQVIPWGDPESLALLARQLD 107 (183)
T ss_pred ------ccC----------------CccceEEeccEEEEeecCcEeecCCCHHHHHHHHHhcC
Confidence 122 222222 22 688999976444456667777777554
No 122
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=88.46 E-value=0.66 Score=41.84 Aligned_cols=70 Identities=10% Similarity=0.049 Sum_probs=42.2
Q ss_pred CCCcceeccCcC-CHHHH--HHHHHhcC-CCCCCcEEEecccccCCCCcH------HHHHHHHHhh---hhCCCeEEEeC
Q 027516 42 NSPVTVCGDIHG-QFHDL--MKLFQTGG-HVPETNYIFMGDFVDRGYNSL------EVFTILLLLK---ARYPANITLLR 108 (222)
Q Consensus 42 ~~~i~viGDiHG-~~~~l--~~ll~~~~-~~~~~~~vflGD~vdrG~~s~------evl~~l~~l~---~~~p~~v~~lr 108 (222)
.-+.+++||-=+ .+... .+.+.++. ..+.+-+|-+||-++.|..+. +..+-+..-. .+- .+++++
T Consensus 26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~--Pwy~vL 103 (394)
T PTZ00422 26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQI--PFFTVL 103 (394)
T ss_pred eEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCC--CeEEeC
Confidence 457999999543 33222 23333332 334577777999888887653 3344444222 122 499999
Q ss_pred CCCch
Q 027516 109 GNHES 113 (222)
Q Consensus 109 GNHE~ 113 (222)
||||.
T Consensus 104 GNHDy 108 (394)
T PTZ00422 104 GQADW 108 (394)
T ss_pred Ccccc
Confidence 99997
No 123
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=88.40 E-value=0.51 Score=46.46 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=41.5
Q ss_pred CCCcceeccCcCCHH----------------HHHHHHHhcCCC-CCCcEEEecccccCCCCc--------------HHHH
Q 027516 42 NSPVTVCGDIHGQFH----------------DLMKLFQTGGHV-PETNYIFMGDFVDRGYNS--------------LEVF 90 (222)
Q Consensus 42 ~~~i~viGDiHG~~~----------------~l~~ll~~~~~~-~~~~~vflGD~vdrG~~s--------------~evl 90 (222)
.-+|+-+.|+||++. .+..++++.... ++..++-.||++..-|.+ .-++
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i 194 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMY 194 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHH
Confidence 346889999999853 233444444322 334455589998754432 1256
Q ss_pred HHHHHhhhhCCCeEEEeCCCCch
Q 027516 91 TILLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 91 ~~l~~l~~~~p~~v~~lrGNHE~ 113 (222)
+.+-.+. --....||||.
T Consensus 195 ~amN~LG-----yDA~tLGNHEF 212 (814)
T PRK11907 195 AALEALG-----FDAGTLGNHEF 212 (814)
T ss_pred HHHhccC-----CCEEEechhhc
Confidence 6665554 35678999995
No 124
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=88.06 E-value=0.72 Score=43.45 Aligned_cols=52 Identities=13% Similarity=-0.045 Sum_probs=30.7
Q ss_pred HHHHHHHhcCC-CCCCcEEEecccccCCCCc-----HHHHHHHHHhhhhCCCeEEEeCCCCch
Q 027516 57 DLMKLFQTGGH-VPETNYIFMGDFVDRGYNS-----LEVFTILLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 57 ~l~~ll~~~~~-~~~~~~vflGD~vdrG~~s-----~evl~~l~~l~~~~p~~v~~lrGNHE~ 113 (222)
.+..++++... .++..++..||.+...+.+ ...++.+-++. --.+..||||.
T Consensus 36 ~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g-----~Da~~lGNHEF 93 (550)
T TIGR01530 36 ALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNAAG-----FDFFTLGNHEF 93 (550)
T ss_pred HHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhccC-----CCEEEeccccc
Confidence 34455555442 2345555689998765433 23455554443 35678999996
No 125
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=86.72 E-value=11 Score=30.50 Aligned_cols=85 Identities=13% Similarity=0.233 Sum_probs=59.9
Q ss_pred CcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchhhhhhhhcch----------------HHHHHHhCChh
Q 027516 71 TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFY----------------DECQRKYGNAN 134 (222)
Q Consensus 71 ~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~----------------~~~~~~~~~~~ 134 (222)
..+||+| .|...-|+++++..++..+..+.+ +.|+-|+|..++...|. .|..++| -..
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~y-I~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~-ltS 113 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSY-IAADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSW-LTS 113 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEE-EEecCchhhHHHHHhhhccccccchhheecchhhhhhhhh-hhh
Confidence 5688887 688999999999999988876554 59999999877544432 2222233 134
Q ss_pred HHHHHHHHhcccceEEEEcCcEEEEec
Q 027516 135 AWRYCTDVFDYLTLSAIIDGTVLCVHG 161 (222)
Q Consensus 135 ~~~~~~~~~~~lP~~~~i~~~~l~vHa 161 (222)
.|..+...+.++++...+.-.++.+-|
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NG 140 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNG 140 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECC
Confidence 566777778888888777666666665
No 126
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=86.55 E-value=2.5 Score=38.92 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=43.7
Q ss_pred CcceeccCcC-C----HHHHHHHHHhcCCCC----CCc-EEEecccccC-CC-----------CcHHHHHHHHHhhhhCC
Q 027516 44 PVTVCGDIHG-Q----FHDLMKLFQTGGHVP----ETN-YIFMGDFVDR-GY-----------NSLEVFTILLLLKARYP 101 (222)
Q Consensus 44 ~i~viGDiHG-~----~~~l~~ll~~~~~~~----~~~-~vflGD~vdr-G~-----------~s~evl~~l~~l~~~~p 101 (222)
.+.+++|+|= . -+++...++.++-.. .-+ +++.||.||- |- +..+-.+.+.++-.+-|
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp 306 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVP 306 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhCC
Confidence 4899999995 2 233444444443321 224 5557999994 22 22333455555444455
Q ss_pred C--eEEEeCCCCchhhh
Q 027516 102 A--NITLLRGNHESRQL 116 (222)
Q Consensus 102 ~--~v~~lrGNHE~~~~ 116 (222)
. .+++.+||||..-.
T Consensus 307 ~~I~v~i~PGnhDa~r~ 323 (481)
T COG1311 307 EHIKVFIMPGNHDAVRQ 323 (481)
T ss_pred CCceEEEecCCCCcccc
Confidence 5 48999999998644
No 127
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=85.32 E-value=3.9 Score=35.38 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=48.9
Q ss_pred CCCcceeccCcCC----HHHHHHHHHhcC-CCC----CCcEEEecccccCC----CCc----HHHHHHHHH-hhhhCC--
Q 027516 42 NSPVTVCGDIHGQ----FHDLMKLFQTGG-HVP----ETNYIFMGDFVDRG----YNS----LEVFTILLL-LKARYP-- 101 (222)
Q Consensus 42 ~~~i~viGDiHG~----~~~l~~ll~~~~-~~~----~~~~vflGD~vdrG----~~s----~evl~~l~~-l~~~~p-- 101 (222)
..+++|+||+|=+ +++|.++|+... ..+ ...+|++|+++-+. ..+ .+-.+-+.. +...+|
T Consensus 27 ~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~L 106 (291)
T PTZ00235 27 RHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKLI 106 (291)
T ss_pred ceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChHH
Confidence 4679999999964 677888888763 222 46789999998663 122 233444444 233444
Q ss_pred ---CeEEEeCCCCchh
Q 027516 102 ---ANITLLRGNHESR 114 (222)
Q Consensus 102 ---~~v~~lrGNHE~~ 114 (222)
.++++|+|-.|-+
T Consensus 107 ~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 107 LEHCYLIFIPGINDPC 122 (291)
T ss_pred HhcCeEEEECCCCCCC
Confidence 4799999999974
No 128
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=84.25 E-value=1.1 Score=44.12 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=40.8
Q ss_pred CCCcceeccCcCCHHH----------------HHHHHHhcCCC-CCCcEEEecccccCCCCc------------------
Q 027516 42 NSPVTVCGDIHGQFHD----------------LMKLFQTGGHV-PETNYIFMGDFVDRGYNS------------------ 86 (222)
Q Consensus 42 ~~~i~viGDiHG~~~~----------------l~~ll~~~~~~-~~~~~vflGD~vdrG~~s------------------ 86 (222)
.-+|+-+.|+||++.. +..++++.... ++..+|-.||++.--+.+
T Consensus 39 ~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGspl~~~~~~~~~~~~~~~~~~~ 118 (780)
T PRK09418 39 NLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKPVDPSY 118 (780)
T ss_pred EEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCchHHHHHhhccccccccccccc
Confidence 4579999999998532 34455544322 344555589988543321
Q ss_pred -HHHHHHHHHhhhhCCCeEEEeCCCCch
Q 027516 87 -LEVFTILLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 87 -~evl~~l~~l~~~~p~~v~~lrGNHE~ 113 (222)
.-+++.+-.+. --....||||.
T Consensus 119 ~~p~i~~mN~lg-----yDa~tlGNHEF 141 (780)
T PRK09418 119 THPLYRLMNLMK-----YDVISLGNHEF 141 (780)
T ss_pred chHHHHHHhccC-----CCEEecccccc
Confidence 23555555554 35678999995
No 129
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=80.03 E-value=1.5 Score=41.33 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=38.7
Q ss_pred CCCcceeccCcCCHH----------HHHHHHHhcCC-----CCCCcEEEecccccCCCCc-----HHHHHHHHHhhhhCC
Q 027516 42 NSPVTVCGDIHGQFH----------DLMKLFQTGGH-----VPETNYIFMGDFVDRGYNS-----LEVFTILLLLKARYP 101 (222)
Q Consensus 42 ~~~i~viGDiHG~~~----------~l~~ll~~~~~-----~~~~~~vflGD~vdrG~~s-----~evl~~l~~l~~~~p 101 (222)
.-.|+.+.|+||++. .+..++++... .++..++..||.+...+.+ .-+++.+-.+..
T Consensus 34 ~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~--- 110 (551)
T PRK09558 34 KITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGY--- 110 (551)
T ss_pred EEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCC---
Confidence 356899999999864 23344444321 2334455589998643322 234555554442
Q ss_pred CeEEEeCCCCchh
Q 027516 102 ANITLLRGNHESR 114 (222)
Q Consensus 102 ~~v~~lrGNHE~~ 114 (222)
.+ +..||||.-
T Consensus 111 -Da-~tlGNHEFD 121 (551)
T PRK09558 111 -DA-MAVGNHEFD 121 (551)
T ss_pred -CE-EcccccccC
Confidence 24 445999953
No 130
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=77.47 E-value=1.2 Score=38.14 Aligned_cols=69 Identities=26% Similarity=0.285 Sum_probs=41.8
Q ss_pred CCCcceeccC--cCCHHHHHHHHHh--cCCC-CCCcEEEeccc-ccCCCCcH------HHHHHH---HHhhhhCCCeEEE
Q 027516 42 NSPVTVCGDI--HGQFHDLMKLFQT--GGHV-PETNYIFMGDF-VDRGYNSL------EVFTIL---LLLKARYPANITL 106 (222)
Q Consensus 42 ~~~i~viGDi--HG~~~~l~~ll~~--~~~~-~~~~~vflGD~-vdrG~~s~------evl~~l---~~l~~~~p~~v~~ 106 (222)
.-++.||||- +|.+..-...++. ++.. .-+-++-+||- -|.|..+. +..+-+ -+|. . ..+.
T Consensus 43 slsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQ--k--pWy~ 118 (336)
T KOG2679|consen 43 SLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQ--K--PWYS 118 (336)
T ss_pred ceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccc--c--chhh
Confidence 4579999995 7777666555443 3322 33667779994 46676542 112222 2232 2 3899
Q ss_pred eCCCCchh
Q 027516 107 LRGNHESR 114 (222)
Q Consensus 107 lrGNHE~~ 114 (222)
|.||||.+
T Consensus 119 vlGNHDyr 126 (336)
T KOG2679|consen 119 VLGNHDYR 126 (336)
T ss_pred hccCcccc
Confidence 99999975
No 131
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=76.65 E-value=2.9 Score=35.88 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=41.6
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCC-CeEEEeCCCCchhh
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYP-ANITLLRGNHESRQ 115 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p-~~v~~lrGNHE~~~ 115 (222)
.+.+.|+|.|...+... ..++.|-++-+||+-.-| .+.||..+=..+- ..| +.-+.|+||||..+
T Consensus 62 ~r~VcisdtH~~~~~i~------~~p~gDvlihagdfT~~g-~~~ev~~fn~~~g-slph~yKIVIaGNHELtF 127 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDIN------DIPDGDVLIHAGDFTNLG-LPEEVIKFNEWLG-SLPHEYKIVIAGNHELTF 127 (305)
T ss_pred eEEEEecCcccccCccc------cCCCCceEEeccCCcccc-CHHHHHhhhHHhc-cCcceeeEEEeeccceee
Confidence 57899999997654433 133456678899996654 3456654443332 223 24678999999854
No 132
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=73.05 E-value=3 Score=39.67 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=27.4
Q ss_pred HHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhc
Q 027516 28 VKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTG 65 (222)
Q Consensus 28 ~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~ 65 (222)
+++|+.=+..+--.++.-.+++||||.|++|..+|+..
T Consensus 18 ~tEIINL~AIlnLPKGTEhF~SDlHGEyeAF~HiLrn~ 55 (640)
T PF06874_consen 18 STEIINLEAILNLPKGTEHFMSDLHGEYEAFDHILRNG 55 (640)
T ss_pred HHHHHHHHHHhcCCCCceEeeeccccchHHHHHHHHcC
Confidence 44444444444344677899999999999999999754
No 133
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=61.61 E-value=59 Score=29.71 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=47.4
Q ss_pred CCCcceeccCcC-CHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhC-CCeEEEeCC
Q 027516 42 NSPVTVCGDIHG-QFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARY-PANITLLRG 109 (222)
Q Consensus 42 ~~~i~viGDiHG-~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~-p~~v~~lrG 109 (222)
...+.||=|-++ +.+++.+.|+.+...+..+++++||+...|+.+.+.-.-+.+..... .+.++++ |
T Consensus 324 ~~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~-G 392 (453)
T PRK10773 324 AEGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSV-G 392 (453)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEE-C
Confidence 345788888555 68888888887765455678899999999999988766555444333 3445444 6
No 134
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=60.07 E-value=89 Score=25.08 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCC-------------------------
Q 027516 14 QHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHV------------------------- 68 (222)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~------------------------- 68 (222)
-.++++++.+-+.+..+.+.++..= ...+++|=++|++-=+-.++..+..+
T Consensus 10 vLisee~I~~ri~ela~~I~~~y~g----~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~k 85 (178)
T COG0634 10 VLISEEQIKARIKELAAQITEDYGG----KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILK 85 (178)
T ss_pred EeeCHHHHHHHHHHHHHHHHHhhCC----CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEec
Confidence 3578999999999988877766543 57889999999987777777665432
Q ss_pred ------CCCcEEEecccccCCCCcHHHHHHHHH
Q 027516 69 ------PETNYIFMGDFVDRGYNSLEVFTILLL 95 (222)
Q Consensus 69 ------~~~~~vflGD~vdrG~~s~evl~~l~~ 95 (222)
....++++=|++|.|---..+.+++..
T Consensus 86 Dld~di~grdVLiVeDIiDsG~TLs~i~~~l~~ 118 (178)
T COG0634 86 DLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKE 118 (178)
T ss_pred ccccCCCCCeEEEEecccccChhHHHHHHHHHh
Confidence 124688899999998755556665543
No 135
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=59.27 E-value=22 Score=24.48 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=44.3
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCC--CCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCC
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGH--VPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGN 110 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~--~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGN 110 (222)
..+.||=|---+.+++..+++.+.. .....++++|+.-|+|..+.+....+.++...+...+++...|
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~ 81 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDN 81 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSB
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 4567778866688888888877643 3456677799999988887776666666665555554444443
No 136
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=54.23 E-value=63 Score=22.86 Aligned_cols=92 Identities=18% Similarity=0.111 Sum_probs=51.9
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCCC-----cceeccCcCCHHHHHHHHHhcCCCCCCcEEEeccccc
Q 027516 7 IAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSP-----VTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVD 81 (222)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~-----i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vd 81 (222)
++.....+.++.+++.+++++.. ...++++..+ --+-|-+|=-+..+...+..+...++..+|+. +.
T Consensus 3 ~~~~~~~~~i~~~~l~~~~~~~~-----~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~~~~~~~ivv~---C~ 74 (109)
T cd01533 3 VEAVRHTPSVSADELAALQARGA-----PLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELAPDPRTPIVVN---CA 74 (109)
T ss_pred ccccccCCcCCHHHHHHHHhcCC-----CcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcCCCCCCeEEEE---CC
Confidence 34445566788888777664311 2345666432 22344455566677666666554444556664 56
Q ss_pred CCCCcHHHHHHHHHhhhhCCCe-EEEeCC
Q 027516 82 RGYNSLEVFTILLLLKARYPAN-ITLLRG 109 (222)
Q Consensus 82 rG~~s~evl~~l~~l~~~~p~~-v~~lrG 109 (222)
.|..|......|..+. ++ + ++.+.|
T Consensus 75 ~G~rs~~a~~~L~~~G--~~-~~v~~l~g 100 (109)
T cd01533 75 GRTRSIIGAQSLINAG--LP-NPVAALRN 100 (109)
T ss_pred CCchHHHHHHHHHHCC--CC-cceeEecC
Confidence 7777766666665443 22 3 666666
No 137
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=53.83 E-value=81 Score=24.67 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=36.8
Q ss_pred ceeccCcCCHHHHHHHH-HhcCC------------CCCCcEEEecccccCCCCcHHHHHHHHHhh
Q 027516 46 TVCGDIHGQFHDLMKLF-QTGGH------------VPETNYIFMGDFVDRGYNSLEVFTILLLLK 97 (222)
Q Consensus 46 ~viGDiHG~~~~l~~ll-~~~~~------------~~~~~~vflGD~vdrG~~s~evl~~l~~l~ 97 (222)
++.+-.+||=..+.+.+ +.++. .+...+||+|=-+|+|.-+.++.++|..++
T Consensus 2 IvYsS~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~ 66 (160)
T PF12641_consen 2 IVYSSRTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDKDMKEFLKKLK 66 (160)
T ss_pred EEEECCCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCHHHHHHHHHcc
Confidence 45555677766664333 33332 133579999999999999999999998876
No 138
>PF14178 YppF: YppF-like protein
Probab=53.17 E-value=46 Score=21.75 Aligned_cols=56 Identities=14% Similarity=0.378 Sum_probs=42.3
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhcCCCC
Q 027516 1 MDLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVP 69 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~~~~~ 69 (222)
|+|.++.++|.......+..+-+|++=|++.-.+.-..+ ..|..+.+-|++.|...
T Consensus 1 M~l~eLk~~F~~~k~y~p~~~NeLLDFar~~Yi~gei~i-------------~eYR~lvreLE~~GA~~ 56 (60)
T PF14178_consen 1 MNLHELKQKFMQKKKYEPEDMNELLDFARKLYIQGEISI-------------NEYRNLVRELEANGAVS 56 (60)
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCcccH-------------HHHHHHHHHHHHhCCCC
Confidence 678999999999999999999999999988544332221 25777778888777543
No 139
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=50.38 E-value=20 Score=30.36 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=26.2
Q ss_pred cEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCC
Q 027516 72 NYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRG 109 (222)
Q Consensus 72 ~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrG 109 (222)
+++|+||+|.+.. -..+-..|.+++.+++..+++.-|
T Consensus 1 ~ilfigdi~g~~G-~~~~~~~l~~lk~~~~~D~vi~Ng 37 (255)
T cd07382 1 KILFIGDIVGKPG-RKAVKEHLPKLKKEYKIDFVIANG 37 (255)
T ss_pred CEEEEEeCCCHHH-HHHHHHHHHHHHHHCCCCEEEECC
Confidence 5899999998743 335677888888887755555444
No 140
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=49.71 E-value=26 Score=29.71 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=41.2
Q ss_pred CCcceeccCcCCH--HHHHHHHHhcCCCC-CCcEEEecccccCCCC-cHHHHHHHHHhhhhCCCeEEEeCCCCch
Q 027516 43 SPVTVCGDIHGQF--HDLMKLFQTGGHVP-ETNYIFMGDFVDRGYN-SLEVFTILLLLKARYPANITLLRGNHES 113 (222)
Q Consensus 43 ~~i~viGDiHG~~--~~l~~ll~~~~~~~-~~~~vflGD~vdrG~~-s~evl~~l~~l~~~~p~~v~~lrGNHE~ 113 (222)
+|+.++||+-|.- ..+..-|..+...- .|-+|..|--..-|.. +.+....+.+.- -=++-+|||=.
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G-----~dviT~GNH~w 70 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAG-----ADVITLGNHTW 70 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhC-----CCEEecccccc
Confidence 5788999999964 45566665554332 3666667776654443 445665555443 34567899975
No 141
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=49.37 E-value=9.3 Score=35.29 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=25.9
Q ss_pred HHHHHhhCCCccccCCCcceeccCcCCHHHHHHHHHhc
Q 027516 28 VKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTG 65 (222)
Q Consensus 28 ~~~~~~~e~~~~~~~~~i~viGDiHG~~~~l~~ll~~~ 65 (222)
|++|+.=+..+--.++.=-+++|+||.|++|..+|+..
T Consensus 23 ~TEIINL~AIlnLPKgTEHF~SDvHGEYeaF~hVLrNg 60 (648)
T COG3855 23 ATEIINLQAILNLPKGTEHFMSDVHGEYEAFNHVLRNG 60 (648)
T ss_pred HHHHhhHHHHhcCCcchhhhhhhhhchHHHHHHHHHcC
Confidence 34444433333233466688999999999999999753
No 142
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=44.20 E-value=31 Score=29.15 Aligned_cols=87 Identities=25% Similarity=0.361 Sum_probs=45.1
Q ss_pred CcEEEecccc-cCCCC---cHHHHHHHHHhhhh-------CCCeEEEeCCCCchhhhhhhhcchHHHHH-HhCChhHHHH
Q 027516 71 TNYIFMGDFV-DRGYN---SLEVFTILLLLKAR-------YPANITLLRGNHESRQLTQVYGFYDECQR-KYGNANAWRY 138 (222)
Q Consensus 71 ~~~vflGD~v-drG~~---s~evl~~l~~l~~~-------~p~~v~~lrGNHE~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (222)
+..+||||-. ||-+. ..=+|.+|.++... -.++|+++-||||...- ..| .+...+ +...++.|.
T Consensus 86 tpciflgdhtgdrfsti~gd~yiltllnsm~nme~nkdsrinknvvvlagnhein~n-gny--~arlanhkls~gDTYn- 161 (318)
T PF13258_consen 86 TPCIFLGDHTGDRFSTIFGDQYILTLLNSMRNMEGNKDSRINKNVVVLAGNHEINFN-GNY--MARLANHKLSAGDTYN- 161 (318)
T ss_pred ccceeecCcccchhhhhcchHHHHHHHHHHHhcccccccccccceEEEecCceeccC-chH--HHHHhhCCCCccchhh-
Confidence 5688888854 33211 12245555554431 12579999999998532 111 111111 111233333
Q ss_pred HHHHhcccceEEEEc-CcEEEEecCCC
Q 027516 139 CTDVFDYLTLSAIID-GTVLCVHGGLS 164 (222)
Q Consensus 139 ~~~~~~~lP~~~~i~-~~~l~vHaGi~ 164 (222)
.++.+|++-.-. .+++..|-||-
T Consensus 162 ---lIKtldVC~YD~erkvltsHHGIi 185 (318)
T PF13258_consen 162 ---LIKTLDVCNYDPERKVLTSHHGII 185 (318)
T ss_pred ---ccccccccccCcchhhhhcccCce
Confidence 455666654422 36777888874
No 143
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=43.23 E-value=39 Score=22.07 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=18.9
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYV 28 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 28 (222)
++.++++++.+++.|+.+|+.++++..
T Consensus 1 ~~~~~l~~l~~g~~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 1 MIKEILKKLRDGEDLSREEAKAAFDAI 27 (66)
T ss_dssp -HHHHHHHHHTT----HHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 467899999999999999999887753
No 144
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.10 E-value=39 Score=29.04 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=31.0
Q ss_pred ccccCCCcceeccCc-------------CCH-HHHHHHHHhcCCCCCCcEEEeccc
Q 027516 38 VQPVNSPVTVCGDIH-------------GQF-HDLMKLFQTGGHVPETNYIFMGDF 79 (222)
Q Consensus 38 ~~~~~~~i~viGDiH-------------G~~-~~l~~ll~~~~~~~~~~~vflGD~ 79 (222)
+++..++++|+||=| ..| ++|..+.+.++.+..+.++++||.
T Consensus 101 ~Y~PG~ki~I~SDghvFsD~I~Vdddh~s~Y~d~Lr~m~~~i~~~~i~kI~n~e~~ 156 (330)
T COG3207 101 FYAPGAKITICSDGHVFSDLIRVDDDHISAYQDALRLMIEEIGATHIGKIFNLEDV 156 (330)
T ss_pred hcCCCCEEEEEeCCceehhhccccchhHHHHHHHHHHHHHHcCCCCccceeecchh
Confidence 566778888888877 233 345667788888888889999884
No 145
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.35 E-value=1e+02 Score=23.21 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCCCCcEEEecccccCCCCc-----HHHHHHHHHhhhhCCCeEEE---eCCCCchh
Q 027516 55 FHDLMKLFQTGGHVPETNYIFMGDFVDRGYNS-----LEVFTILLLLKARYPANITL---LRGNHESR 114 (222)
Q Consensus 55 ~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s-----~evl~~l~~l~~~~p~~v~~---lrGNHE~~ 114 (222)
+++|+..++..+....--++|+|+-.|++.+| +...-.+.+--..+|..+++ --||-+++
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~W 79 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYW 79 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcc
Confidence 67888888887665556678899999987665 33233333322256766544 45888775
No 146
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=42.01 E-value=30 Score=29.60 Aligned_cols=40 Identities=28% Similarity=0.496 Sum_probs=25.6
Q ss_pred cEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCchh
Q 027516 72 NYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESR 114 (222)
Q Consensus 72 ~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE~~ 114 (222)
+++|+||+|.+. .-..+-..|-+++.+++-.+++. |=|..
T Consensus 2 ~ilfiGDi~G~~-Gr~~l~~~L~~lk~~~~~D~vIa--NgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVYGKA-GRKIVKNNLPQLKSKYQADLVIA--NGENT 41 (266)
T ss_pred eEEEEEecCCHH-HHHHHHHHHHHHHHhCCCCEEEE--cCccc
Confidence 589999999651 12234577778888876555444 44554
No 147
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=42.01 E-value=58 Score=30.97 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCC--CCcEEEecccc--cCCCCcHH----HHHHHHHh-hhhCCC-eEEEeCCCCchhhhh
Q 027516 56 HDLMKLFQTGGHVP--ETNYIFMGDFV--DRGYNSLE----VFTILLLL-KARYPA-NITLLRGNHESRQLT 117 (222)
Q Consensus 56 ~~l~~ll~~~~~~~--~~~~vflGD~v--drG~~s~e----vl~~l~~l-~~~~p~-~v~~lrGNHE~~~~~ 117 (222)
..+..+|+.++... -|-++-.||.+ |+++++.+ ++..+.++ ...+|+ -|+...||||..-.+
T Consensus 195 ~lies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N 266 (577)
T KOG3770|consen 195 RLIESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVN 266 (577)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHh
Confidence 45667777776543 36677799998 45665543 33333332 223453 499999999986443
No 148
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=38.35 E-value=71 Score=27.15 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=28.8
Q ss_pred cEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCC
Q 027516 72 NYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNH 111 (222)
Q Consensus 72 ~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNH 111 (222)
+++|+||+|.+ +.-..+-+.|-.+|.++.-.++.+-|+.
T Consensus 2 riLfiGDvvGk-~Gr~~v~~~Lp~lk~kyk~dfvI~N~EN 40 (266)
T COG1692 2 RILFIGDVVGK-PGRKAVKEHLPQLKSKYKIDFVIVNGEN 40 (266)
T ss_pred eEEEEecccCc-chHHHHHHHhHHHHHhhcCcEEEEcCcc
Confidence 68999999986 3344567788888988866677766643
No 149
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=36.91 E-value=1e+02 Score=25.45 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=42.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCc------CCHHHHHHHHHhcCCCCCCcEEEeccc
Q 027516 12 EGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIH------GQFHDLMKLFQTGGHVPETNYIFMGDF 79 (222)
Q Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiH------G~~~~l~~ll~~~~~~~~~~~vflGD~ 79 (222)
+|-.+|..+..+.++++.+++.+.. ...+++.||+- .++..+.++++.+. ...++.-|+-
T Consensus 34 ~Gi~~P~~~~~~~l~rl~~li~~~~-----~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~---~~v~~V~GNH 99 (225)
T TIGR00024 34 QGVMVPGFQFREIIERALSIADKYG-----IEALIINGDLKHEFKKGLEWRFIREFIEVTF---RDLILIRGNH 99 (225)
T ss_pred cCCcCChhHHHHHHHHHHHHHhhcC-----CCEEEEcCccccccCChHHHHHHHHHHHhcC---CcEEEECCCC
Confidence 4677898899999999988877543 34789999986 33556666776643 2455556775
No 150
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=35.57 E-value=1.3e+02 Score=21.67 Aligned_cols=43 Identities=23% Similarity=0.660 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEe
Q 027516 56 HDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLL 107 (222)
Q Consensus 56 ~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~l 107 (222)
..+.++++ .-|+.++|++||= |....|+..-+ ...+|+++..|
T Consensus 53 ~~i~~i~~---~fP~~kfiLIGDs---gq~DpeiY~~i---a~~~P~~i~ai 95 (100)
T PF09949_consen 53 DNIERILR---DFPERKFILIGDS---GQHDPEIYAEI---ARRFPGRILAI 95 (100)
T ss_pred HHHHHHHH---HCCCCcEEEEeeC---CCcCHHHHHHH---HHHCCCCEEEE
Confidence 34445554 4467789999985 55567776644 45678876554
No 151
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=34.28 E-value=1.6e+02 Score=26.41 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCc-CCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHH
Q 027516 16 LLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIH-GQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILL 94 (222)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiH-G~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~ 94 (222)
++.+++.+-+.....+-.+- .+ .....+.+|=|-+ .+.+++.+.|+.+...+..+++++|+.-.-|..+.+.-..+.
T Consensus 271 i~~~~i~~~l~~~~~~~gR~-e~-~~~~~~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~~~~~~l~ 348 (417)
T TIGR01143 271 IPLEEIAEGLAELKLVKGRF-EI-QTKNGLTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSEELHAEVG 348 (417)
T ss_pred CCHHHHHHHHHhCCCCCCce-eE-EcCCCcEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHHHHHHHHH
Confidence 55565555444332221111 12 2235678888855 488999998888764444568889999777887766544444
Q ss_pred HhhhhCCCeEEEeCCCC
Q 027516 95 LLKARYPANITLLRGNH 111 (222)
Q Consensus 95 ~l~~~~p~~v~~lrGNH 111 (222)
+......-..+++-|.+
T Consensus 349 ~~~~~~~~d~vi~~g~~ 365 (417)
T TIGR01143 349 RYANSLGIDLVFLVGEE 365 (417)
T ss_pred HHHHHcCCCEEEEECHH
Confidence 43333331244445643
No 152
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=32.28 E-value=97 Score=22.40 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=42.9
Q ss_pred CcceeccCcCCHHHHHHHHHhcCCCC---------------C--CcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEE
Q 027516 44 PVTVCGDIHGQFHDLMKLFQTGGHVP---------------E--TNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITL 106 (222)
Q Consensus 44 ~i~viGDiHG~~~~l~~ll~~~~~~~---------------~--~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~ 106 (222)
||.||.|=-.....|..+|+-+|... . ..+|.+|+.- .....+.++...+|.-=++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~-------~~~~~l~~l~~~~~~~Pvl 73 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADWSSPWEACAVILGSCS-------KLAELLKELLKWAPHIPVL 73 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhhhcCCcEEEEEecCch-------hHHHHHHHHHhhCCCCCEE
Confidence 46677776667777788887666532 1 1244455542 5566677777778877788
Q ss_pred eCCCCchh
Q 027516 107 LRGNHESR 114 (222)
Q Consensus 107 lrGNHE~~ 114 (222)
+.|.++..
T Consensus 74 llg~~~~~ 81 (109)
T PF06490_consen 74 LLGEHDSP 81 (109)
T ss_pred EECCCCcc
Confidence 88988876
No 153
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=32.00 E-value=1e+02 Score=21.02 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 027516 1 MDLDQWIAKVKEGQHLLEDELQLLCEYVKEILIE 34 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 34 (222)
|+-+++++.+.....++..++.++++...+++..
T Consensus 1 mtk~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~ 34 (90)
T smart00411 1 MTKSELIDAIAEKAGLSKKDAKAAVDAFLEIITE 34 (90)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4667888888888888999988888887766553
No 154
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.56 E-value=29 Score=30.68 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=35.5
Q ss_pred HhhCCCccccCCCcceeccCc-CCHHHHHHHHHhcCCCCCCcEEE-eccccc--CCCCcHHHHHHHHHhhh
Q 027516 32 LIEESNVQPVNSPVTVCGDIH-GQFHDLMKLFQTGGHVPETNYIF-MGDFVD--RGYNSLEVFTILLLLKA 98 (222)
Q Consensus 32 ~~~e~~~~~~~~~i~viGDiH-G~~~~l~~ll~~~~~~~~~~~vf-lGD~vd--rG~~s~evl~~l~~l~~ 98 (222)
+++-|-.++-...++++||.| |||.++.. .+..++| .-|+=. -|+....++.+..+|..
T Consensus 46 ~~~~p~~lp~~p~tw~cGD~HLgN~ga~~~--------~~G~V~f~i~DFDe~~~g~~~~DlvRl~~Sl~~ 108 (410)
T COG4320 46 MKTWPWSLPKTPFTWLCGDAHLGNFGAARN--------SKGNVVFKIADFDEGHLGQYIWDLVRLAVSLVL 108 (410)
T ss_pred HhcCccccCCCCceEEecccccccchhhcc--------CCCceEEEecccchhhccchHHHHHHHHHHHHH
Confidence 445565667778899999999 67776643 1223444 555421 24555566665555543
No 155
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=30.53 E-value=83 Score=24.14 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=16.0
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYVKEIL 32 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 32 (222)
+.++|++.+.....++..++..++++..+++
T Consensus 32 t~~el~~~Ia~~s~~s~~dv~~vl~~l~~~i 62 (145)
T TIGR01201 32 DFEEIAELIAEESSLSPGDVKGIIDRLAYVL 62 (145)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4455555555545555555555555544444
No 156
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=30.47 E-value=1.5e+02 Score=20.50 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCccccCCC-----cceeccCcCCHHHHHH---HHHhc-CCCCCCcEEEecccccCC
Q 027516 13 GQHLLEDELQLLCEYVKEILIEESNVQPVNSP-----VTVCGDIHGQFHDLMK---LFQTG-GHVPETNYIFMGDFVDRG 83 (222)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~-----i~viGDiHG~~~~l~~---ll~~~-~~~~~~~~vflGD~vdrG 83 (222)
|+.++++++.++++. ....++++..+ --+-|-+|=.+..+.. .+... ...++..+|+ |+..|
T Consensus 1 ~~~is~~~l~~~~~~------~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv---yC~~G 71 (101)
T cd01518 1 GTYLSPAEWNELLED------PEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLM---YCTGG 71 (101)
T ss_pred CCcCCHHHHHHHHcC------CCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEE---ECCCc
Confidence 356777777766641 22345555432 2233444433333322 12211 1133444555 45678
Q ss_pred CCcHHHHHHHHHhhhhCCCeEEEeCCC
Q 027516 84 YNSLEVFTILLLLKARYPANITLLRGN 110 (222)
Q Consensus 84 ~~s~evl~~l~~l~~~~p~~v~~lrGN 110 (222)
..|.....++.++- -.+++.|.|-
T Consensus 72 ~rs~~a~~~L~~~G---~~~v~~l~GG 95 (101)
T cd01518 72 IRCEKASAYLKERG---FKNVYQLKGG 95 (101)
T ss_pred hhHHHHHHHHHHhC---Ccceeeechh
Confidence 88877776665443 1257777773
No 157
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=30.39 E-value=2.2e+02 Score=26.30 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=49.6
Q ss_pred cCCCcceecc-CcCCHHHHHHHHHhcCCCCCCc-EEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCC
Q 027516 41 VNSPVTVCGD-IHGQFHDLMKLFQTGGHVPETN-YIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGN 110 (222)
Q Consensus 41 ~~~~i~viGD-iHG~~~~l~~ll~~~~~~~~~~-~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGN 110 (222)
......+|-| ..++.+.+...++.....+..+ ++++||+..-|.+|.++=.-+-+......-..+++-|.
T Consensus 324 ~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G~ 395 (451)
T COG0770 324 LANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVGE 395 (451)
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 3445555555 5678899988888877666655 89999999999999887665555444432347777887
No 158
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=29.28 E-value=1.2e+02 Score=25.99 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=22.3
Q ss_pred CCcEEEecccccCCCCcHHHHHHHHHhhhhCC
Q 027516 70 ETNYIFMGDFVDRGYNSLEVFTILLLLKARYP 101 (222)
Q Consensus 70 ~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p 101 (222)
...+|++||+ +-.+.+.+.-.++..|....|
T Consensus 177 ~~pvIl~GDf-N~~~~s~~~~~ml~~l~~~~p 207 (283)
T TIGR03395 177 DETVLIGGDL-NVNKGSNEYHDMFKTLNVSEP 207 (283)
T ss_pred CceEEEEeeC-CCCCCCHHHHHHHHHhcccCC
Confidence 4568999998 445778777777777765545
No 159
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=29.01 E-value=2.1e+02 Score=22.68 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=9.4
Q ss_pred CCcEEEecccccC
Q 027516 70 ETNYIFMGDFVDR 82 (222)
Q Consensus 70 ~~~~vflGD~vdr 82 (222)
.|.+||+|=.-+.
T Consensus 109 yDlviflG~~~yy 121 (170)
T COG1880 109 YDLVIFLGSIYYY 121 (170)
T ss_pred cceEEEEeccHHH
Confidence 4889999975443
No 160
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=28.69 E-value=2.2e+02 Score=28.70 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=45.3
Q ss_pred CCCcceeccCcC-CHHHHHHHHHhcCCCC-CCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCCc
Q 027516 42 NSPVTVCGDIHG-QFHDLMKLFQTGGHVP-ETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHE 112 (222)
Q Consensus 42 ~~~i~viGDiHG-~~~~l~~ll~~~~~~~-~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNHE 112 (222)
...+.+|=|-++ +.+++..+|+.+...+ ..+++++|+.-+.|+.+...-..+-+.........+++-|..-
T Consensus 833 ~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~~~h~~~g~~~~~~~~~~vi~~Ge~~ 905 (958)
T PRK11929 833 SCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGPAMHREVGKYARQLGIDALITLGEAA 905 (958)
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHHHHHHHHHHHHHHcCCCEEEEECcCH
Confidence 356778888664 7888888888776433 4578889999988888876543333332222223444457543
No 161
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=27.37 E-value=1.3e+02 Score=22.90 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCC
Q 027516 58 LMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNH 111 (222)
Q Consensus 58 l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNH 111 (222)
+..+++.+..+|..++|.+ |+....++.+.++.+.+.....| |+++++..
T Consensus 42 ~~d~l~~~~~D~~t~~I~l--y~E~~~d~~~f~~~~~~a~~~KP--Vv~lk~Gr 91 (138)
T PF13607_consen 42 FADLLEYLAEDPDTRVIVL--YLEGIGDGRRFLEAARRAARRKP--VVVLKAGR 91 (138)
T ss_dssp HHHHHHHHCT-SS--EEEE--EES--S-HHHHHHHHHHHCCCS---EEEEE---
T ss_pred HHHHHHHHhcCCCCCEEEE--EccCCCCHHHHHHHHHHHhcCCC--EEEEeCCC
Confidence 4556666667788888887 88877788889998888876655 77777654
No 162
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.76 E-value=39 Score=23.00 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.7
Q ss_pred ccccCCCCcHHHHHHHHHhhhh
Q 027516 78 DFVDRGYNSLEVFTILLLLKAR 99 (222)
Q Consensus 78 D~vdrG~~s~evl~~l~~l~~~ 99 (222)
|+|++|-+|+.++.++..+++.
T Consensus 23 NLi~~GLDSiR~M~L~~~wR~~ 44 (74)
T COG3433 23 NLIDYGLDSIRMMALLERWRKR 44 (74)
T ss_pred hHHHhchhHHHHHHHHHHHHHc
Confidence 6899999999999999998854
No 163
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=26.64 E-value=3.3e+02 Score=22.81 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=43.5
Q ss_pred HHHHHHHhc-CCCCCHHHHHHHHHHHHHHHhhCCC---cc-------------ccCCCcceeccC--cCCHHHHHHHHHh
Q 027516 4 DQWIAKVKE-GQHLLEDELQLLCEYVKEILIEESN---VQ-------------PVNSPVTVCGDI--HGQFHDLMKLFQT 64 (222)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~e~~---~~-------------~~~~~i~viGDi--HG~~~~l~~ll~~ 64 (222)
..+.+++.+ +-.++++|+..=+-.|.+++.++.- ++ ......+|||+. |=+|+.+.+.|+.
T Consensus 54 ~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidTs~pn~VViglape~F~y~~ln~AFrv 133 (262)
T KOG3040|consen 54 RNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDTSDPNCVVIGLAPEGFSYQRLNRAFRV 133 (262)
T ss_pred HHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccCCCCCeEEEecCcccccHHHHHHHHHH
Confidence 356677754 6679999999999999998887641 11 112345666654 3355555555555
Q ss_pred cCCCCCCcEEEe
Q 027516 65 GGHVPETNYIFM 76 (222)
Q Consensus 65 ~~~~~~~~~vfl 76 (222)
+-..++..+|-+
T Consensus 134 L~e~~k~~LIai 145 (262)
T KOG3040|consen 134 LLEMKKPLLIAI 145 (262)
T ss_pred HHcCCCCeEEEe
Confidence 444444444443
No 164
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=26.35 E-value=5.1e+02 Score=23.94 Aligned_cols=89 Identities=9% Similarity=0.021 Sum_probs=54.7
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhhCC--CccccCCCcceeccCcCCHHHHHHHHHh--cCCC-CCCcEEEecccccCC
Q 027516 9 KVKEGQHLLEDELQLLCEYVKEILIEES--NVQPVNSPVTVCGDIHGQFHDLMKLFQT--GGHV-PETNYIFMGDFVDRG 83 (222)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~--~~~~~~~~i~viGDiHG~~~~l~~ll~~--~~~~-~~~~~vflGD~vdrG 83 (222)
.+.....+|+++...|.+.+.++..... .+.........-.|+|-+.......+.. .+.. .....+--|++|+.|
T Consensus 58 al~~~Giip~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~g~~~~~~~~~h~~~~vh~G 137 (464)
T PRK00485 58 VNAELGLLDAEKADAIVAAADEVIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMS 137 (464)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhCccccCCCcchhhccccccccccHHHHHHHHHHHhcCccccccCccCccccCCCC
Confidence 3456788999999999888877754322 2222223344578889888766544322 2311 113344458999999
Q ss_pred CCcHHHHHHHHHhh
Q 027516 84 YNSLEVFTILLLLK 97 (222)
Q Consensus 84 ~~s~evl~~l~~l~ 97 (222)
.-+..++.....|.
T Consensus 138 ~SrnD~v~Ta~~L~ 151 (464)
T PRK00485 138 QSSNDTFPTAMHIA 151 (464)
T ss_pred CCchhHHHHHHHHH
Confidence 88877666555544
No 165
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=25.85 E-value=2e+02 Score=24.64 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCccccCCCcceeccCcC-CHHHHHHHHHhcCCCCCCcEEEe
Q 027516 13 GQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHG-QFHDLMKLFQTGGHVPETNYIFM 76 (222)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~viGDiHG-~~~~l~~ll~~~~~~~~~~~vfl 76 (222)
+..+.-+++.++++.+.. .| ..-..|++||-|.|. +-.+...+|+.+..+|...++++
T Consensus 70 ~~~i~v~~ir~~~~~~~~----~p--~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il 128 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNK----KP--YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIIL 128 (313)
T ss_pred CCCCCHHHHHHHHHHHhc----Cc--ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 445666677766655432 22 234688999999877 44566677777777776655554
No 166
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=25.42 E-value=1.6e+02 Score=19.69 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=33.5
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcc
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQ 39 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~ 39 (222)
|+++.|..+-.-.-.|.+++.+++++.-.-+..+..+.
T Consensus 5 ~~~e~i~~iA~~t~~P~e~V~~my~dt~~~l~~~ARV~ 42 (66)
T PF12085_consen 5 NVDEVIRSIAEETGTPAETVRRMYDDTMRELSSGARVH 42 (66)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCchh
Confidence 67788888888889999999999999999999988774
No 167
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=25.23 E-value=1.8e+02 Score=18.07 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 027516 3 LDQWIAKVKEGQHLLEDELQLLCEYVKEILIE 34 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 34 (222)
|+++++.+.+ +-+|-++..++++++.+.++.
T Consensus 8 Le~Iv~~Le~-~~~sLdes~~lyeeg~~l~~~ 38 (53)
T PF02609_consen 8 LEEIVEKLES-GELSLDESLKLYEEGMELIKK 38 (53)
T ss_dssp HHHHHHHHHT-T-S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHH
Confidence 5667777774 578899999999999887765
No 168
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=22.94 E-value=3.5e+02 Score=24.05 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=20.0
Q ss_pred eccCcCCHHHHHHHHHhcC-CCCCCcEEEecccccCCCCc-HHHHHHHHH
Q 027516 48 CGDIHGQFHDLMKLFQTGG-HVPETNYIFMGDFVDRGYNS-LEVFTILLL 95 (222)
Q Consensus 48 iGDiHG~~~~l~~ll~~~~-~~~~~~~vflGD~vdrG~~s-~evl~~l~~ 95 (222)
.|-..+..+.+.+.+..+. ..++-++++.|| |+.. .++...+.+
T Consensus 239 ~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~----g~~r~~~l~~~~~~ 284 (425)
T PRK05749 239 ASTHEGEEELVLDAHRALLKQFPNLLLILVPR----HPERFKEVEELLKK 284 (425)
T ss_pred eCCCchHHHHHHHHHHHHHHhCCCcEEEEcCC----ChhhHHHHHHHHHh
Confidence 3433344444445544432 123445666665 4443 344444444
No 169
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=22.47 E-value=86 Score=14.31 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=8.3
Q ss_pred HHHHHHHHhcCC
Q 027516 3 LDQWIAKVKEGQ 14 (222)
Q Consensus 3 ~~~~~~~~~~~~ 14 (222)
+|+++|.++.++
T Consensus 3 mdsllealqtg~ 14 (15)
T PF06345_consen 3 MDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHccC
Confidence 577888777654
No 170
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=22.07 E-value=1.4e+02 Score=20.98 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=10.8
Q ss_pred CcceeccCc-CCHHHHHHHHH
Q 027516 44 PVTVCGDIH-GQFHDLMKLFQ 63 (222)
Q Consensus 44 ~i~viGDiH-G~~~~l~~ll~ 63 (222)
|-++|||-| |.+++|.++-+
T Consensus 62 PQIFi~~~~iGg~ddl~~l~e 82 (92)
T cd03030 62 PQIFNGDEYCGDYEAFFEAKE 82 (92)
T ss_pred CEEEECCEEeeCHHHHHHHHh
Confidence 445555555 55555555443
No 171
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=21.35 E-value=2.1e+02 Score=20.13 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCC
Q 027516 56 HDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRG 109 (222)
Q Consensus 56 ~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrG 109 (222)
..+.+.++..+..+++.+|+.. ++|..+......+..+-. .+++.+.|
T Consensus 64 ~~~~~~~~~~~~~~~~~iv~yc---~~g~~s~~~~~~l~~~G~---~~v~~l~G 111 (118)
T cd01449 64 EELRALFAALGITPDKPVIVYC---GSGVTACVLLLALELLGY---KNVRLYDG 111 (118)
T ss_pred HHHHHHHHHcCCCCCCCEEEEC---CcHHHHHHHHHHHHHcCC---CCeeeeCC
Confidence 4555677777766777777763 456666666555544331 24666666
No 172
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=21.01 E-value=1.6e+02 Score=20.65 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=23.8
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 027516 1 MDLDQWIAKVKEGQHLLEDELQLLCEYVKEILI 33 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 33 (222)
|+.+++++.+....-++..++..+++...+.+.
T Consensus 3 mtk~el~~~ia~~~~~s~~~v~~vl~~~~~~i~ 35 (99)
T PRK00285 3 LTKADLAEALFEKVGLSKREAKELVELFFEEIR 35 (99)
T ss_pred cCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 356778888877777888888877777666553
No 173
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=20.74 E-value=2.3e+02 Score=17.71 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 027516 4 DQWIAKVKEGQHLLEDELQLLCEYVKEILI 33 (222)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 33 (222)
+++-..+.+..=+++.+-+.|+..+.+++.
T Consensus 14 e~lk~eLe~K~WIs~~e~i~lLN~~TeiIN 43 (49)
T PF04839_consen 14 EQLKNELESKPWISEKERIELLNQATEIIN 43 (49)
T ss_dssp HHHHHHHHHSTTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 345556667888999999999999999875
No 174
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=20.72 E-value=95 Score=23.13 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=32.8
Q ss_pred CCcceeccCcCCHHHHHHHHHhcC----------------------CCCCCcEEEecccccCCCCcHHHHHHHHHhh
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGG----------------------HVPETNYIFMGDFVDRGYNSLEVFTILLLLK 97 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~----------------------~~~~~~~vflGD~vdrG~~s~evl~~l~~l~ 97 (222)
.|-++|||...--....+.++..+ ..+.+.++++|-.-.|-...+..+.++.+.+
T Consensus 36 ~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l~~~~ 112 (123)
T PF04263_consen 36 KPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGALGGRFDHTLANLNLLYKYK 112 (123)
T ss_dssp --SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES-SSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHHHHHHHHH
Confidence 467888998887776666555432 1133467777777777677777777776655
No 175
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=20.68 E-value=3.3e+02 Score=21.16 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=36.7
Q ss_pred CCcceeccCcCCHHHHHHHHHhcCCCCCCcEEEecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCCCC
Q 027516 43 SPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNH 111 (222)
Q Consensus 43 ~~i~viGDiHG~~~~l~~ll~~~~~~~~~~~vflGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrGNH 111 (222)
-++++++. |....+...++..+....-..++.+|-+.++.-..+++..+.+.--..|..+++ -|.+
T Consensus 109 ~~~~i~Sn--~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~-vgD~ 174 (198)
T TIGR01428 109 YRLAILSN--GSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLF-VASN 174 (198)
T ss_pred CeEEEEeC--CCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEE-EeCC
Confidence 46788876 456667777887775544334555555555444455555554433334555544 3443
No 176
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=20.49 E-value=4.4e+02 Score=23.59 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=38.6
Q ss_pred CCcceeccCc--CCHHH-----HHHHHHhcCCCCCCcEEEecccc----c---C-C---CCcHHHHHHHHHhhhhCCCeE
Q 027516 43 SPVTVCGDIH--GQFHD-----LMKLFQTGGHVPETNYIFMGDFV----D---R-G---YNSLEVFTILLLLKARYPANI 104 (222)
Q Consensus 43 ~~i~viGDiH--G~~~~-----l~~ll~~~~~~~~~~~vflGD~v----d---r-G---~~s~evl~~l~~l~~~~p~~v 104 (222)
.+++|+|+.- |+++. +-+.+.. ...+.+++.||-- + . . .+..++.+.+.+. ..|+.+
T Consensus 325 r~i~VlG~~~e~G~~~~~~~~~l~~~~~~---~~~d~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~d~ 399 (417)
T TIGR01143 325 KKILVLGDMAELGEYSEELHAEVGRYANS---LGIDLVFLVGEEAAVIYDSLGCKGFHFADKDELLAFLKLE--LGEGDV 399 (417)
T ss_pred CEEEEEcCchhcChHHHHHHHHHHHHHHH---cCCCEEEEECHHHHHHHHhcccCcEEECCHHHHHHHHHHh--cCCCCE
Confidence 5689999985 77766 3333332 2247888889832 1 1 1 1223344444322 345678
Q ss_pred EEeCCCCchh
Q 027516 105 TLLRGNHESR 114 (222)
Q Consensus 105 ~~lrGNHE~~ 114 (222)
+++.|.+-..
T Consensus 400 VLlkGSr~~~ 409 (417)
T TIGR01143 400 VLVKGSRSVK 409 (417)
T ss_pred EEEEeCCcCc
Confidence 8888877643
No 177
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=20.03 E-value=8.2e+02 Score=23.84 Aligned_cols=104 Identities=17% Similarity=0.232 Sum_probs=61.3
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccC--------------CCcceeccCcCCHHHHHHHHHhc--
Q 027516 2 DLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVN--------------SPVTVCGDIHGQFHDLMKLFQTG-- 65 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~--------------~~i~viGDiHG~~~~l~~ll~~~-- 65 (222)
++.+.++..++++.+-......++... .+|.+++.. .+--++.|++|.-+...++++-+
T Consensus 20 sl~eyL~~vk~~p~~~~~A~~R~~~~I-----g~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yGlee~ieriv~~l~~ 94 (644)
T PRK15455 20 SLQEYLELCKQDPSAYANAAERLLMAI-----GEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYGMEEAIEQIVSYFRH 94 (644)
T ss_pred cHHHHHHHHhcChHHHhhHHHHHHHHh-----CCceeeecCccchhhhhhcccccccccchhcccCcHHHHHHHHHHHHH
Confidence 566777777777666655555555543 444433332 35567889999999998877644
Q ss_pred ---CCCCCCcEEE-ecccccCCCCcHHHHHHHHHhhhhCCCeEEEeCC------CCchhh
Q 027516 66 ---GHVPETNYIF-MGDFVDRGYNSLEVFTILLLLKARYPANITLLRG------NHESRQ 115 (222)
Q Consensus 66 ---~~~~~~~~vf-lGD~vdrG~~s~evl~~l~~l~~~~p~~v~~lrG------NHE~~~ 115 (222)
+.....++++ +|=- .-|.-++ .+.|...-..+| ++.+.| -||..+
T Consensus 95 Aa~gl~~~~~IL~LvGPp-G~GKSsL--a~~la~~le~~~--~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 95 AAQGLEEKKQILYLLGPV-GGGKSSL--AERLKSLMERVP--IYVLKANGERSPVNESPL 149 (644)
T ss_pred HHHhcCCCCceEEEecCC-CCCchHH--HHHHHHHHHhCc--ceeecCCCCCCCCCCCCC
Confidence 2333344554 5543 4444443 334444444555 888988 566543
Done!