Query 027517
Match_columns 222
No_of_seqs 181 out of 1496
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 11:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 100.0 1.1E-38 2.4E-43 231.1 21.7 215 4-222 21-237 (238)
2 PF01209 Ubie_methyltran: ubiE 100.0 3.8E-40 8.2E-45 241.6 10.9 216 4-222 17-233 (233)
3 PLN02233 ubiquinone biosynthes 100.0 3.2E-35 6.9E-40 220.4 24.4 219 4-222 43-261 (261)
4 KOG1540 Ubiquinone biosynthesi 100.0 1.1E-33 2.4E-38 201.4 18.9 218 4-221 70-294 (296)
5 TIGR02752 MenG_heptapren 2-hep 100.0 9E-31 1.9E-35 194.3 22.8 216 4-222 15-231 (231)
6 PRK05785 hypothetical protein; 100.0 3.9E-29 8.4E-34 183.6 19.6 203 4-222 19-224 (226)
7 PRK00216 ubiE ubiquinone/menaq 100.0 3.9E-26 8.6E-31 170.4 22.4 216 5-222 22-238 (239)
8 TIGR01934 MenG_MenH_UbiE ubiqu 100.0 1.1E-25 2.4E-30 166.3 21.7 213 5-222 10-223 (223)
9 PLN02244 tocopherol O-methyltr 99.9 2.6E-23 5.7E-28 161.7 18.9 172 24-213 103-282 (340)
10 PRK14103 trans-aconitate 2-met 99.9 3E-23 6.6E-28 155.9 17.9 180 1-206 1-181 (255)
11 PLN02396 hexaprenyldihydroxybe 99.9 1.4E-23 3.1E-28 160.5 15.5 161 34-212 131-292 (322)
12 PTZ00098 phosphoethanolamine N 99.9 8E-23 1.7E-27 153.6 18.9 161 24-212 42-205 (263)
13 PLN02232 ubiquinone biosynthes 99.9 1.8E-23 3.8E-28 145.9 13.6 160 63-222 1-160 (160)
14 PRK15451 tRNA cmo(5)U34 methyl 99.9 2.3E-23 5E-28 155.5 13.1 182 33-222 55-242 (247)
15 COG2227 UbiG 2-polyprenyl-3-me 99.9 1.5E-23 3.3E-28 149.8 10.4 161 34-213 59-219 (243)
16 PLN02336 phosphoethanolamine N 99.9 5.8E-22 1.3E-26 161.4 18.4 162 24-212 256-417 (475)
17 PF13489 Methyltransf_23: Meth 99.9 1.4E-22 3.1E-27 142.2 12.3 153 20-206 7-160 (161)
18 PRK11036 putative S-adenosyl-L 99.9 2.6E-22 5.7E-27 150.8 14.5 163 33-210 43-208 (255)
19 PLN02490 MPBQ/MSBQ methyltrans 99.9 9.9E-22 2.2E-26 150.8 17.8 160 21-212 99-259 (340)
20 TIGR00740 methyltransferase, p 99.9 9E-23 1.9E-27 152.0 11.7 182 33-222 52-239 (239)
21 PRK08317 hypothetical protein; 99.9 2.9E-21 6.3E-26 144.2 18.2 168 21-210 6-177 (241)
22 PF13847 Methyltransf_31: Meth 99.9 1.5E-21 3.3E-26 135.5 14.6 109 33-145 2-112 (152)
23 PRK11873 arsM arsenite S-adeno 99.9 3.4E-21 7.3E-26 146.3 17.7 157 31-209 74-230 (272)
24 PRK10258 biotin biosynthesis p 99.9 8.2E-21 1.8E-25 142.5 18.4 155 20-204 28-182 (251)
25 KOG1270 Methyltransferases [Co 99.9 4.3E-22 9.4E-27 143.3 9.8 157 35-212 90-252 (282)
26 PRK01683 trans-aconitate 2-met 99.9 1.5E-20 3.2E-25 141.7 18.4 128 3-145 5-132 (258)
27 PRK15068 tRNA mo(5)U34 methylt 99.9 6.3E-21 1.4E-25 146.9 16.5 163 26-211 114-276 (322)
28 PRK06202 hypothetical protein; 99.9 1.9E-20 4.1E-25 138.9 18.1 189 5-212 32-225 (232)
29 TIGR00452 methyltransferase, p 99.9 2.8E-20 6.2E-25 141.8 17.0 162 27-211 114-275 (314)
30 PF02353 CMAS: Mycolic acid cy 99.9 1.1E-20 2.4E-25 141.8 14.4 164 24-212 52-220 (273)
31 COG2230 Cfa Cyclopropane fatty 99.9 2E-20 4.4E-25 138.4 14.5 163 24-212 62-226 (283)
32 PRK11207 tellurite resistance 99.9 1.3E-20 2.8E-25 136.0 13.1 147 26-209 22-170 (197)
33 smart00828 PKS_MT Methyltransf 99.9 1.9E-20 4.1E-25 138.3 13.4 148 36-213 1-148 (224)
34 PF08241 Methyltransf_11: Meth 99.9 6.7E-21 1.4E-25 121.8 9.5 95 39-141 1-95 (95)
35 COG4106 Tam Trans-aconitate me 99.8 4.2E-20 9.1E-25 129.2 13.6 186 3-212 4-189 (257)
36 KOG4300 Predicted methyltransf 99.8 3.7E-20 7.9E-25 128.6 12.7 171 29-220 71-243 (252)
37 TIGR02716 C20_methyl_CrtF C-20 99.8 2.3E-19 5E-24 138.3 18.6 163 24-208 139-305 (306)
38 PF07021 MetW: Methionine bios 99.8 3.1E-20 6.8E-25 129.2 12.1 164 26-214 7-172 (193)
39 PF12847 Methyltransf_18: Meth 99.8 2.7E-20 5.9E-25 122.7 10.5 106 34-143 1-111 (112)
40 TIGR02072 BioC biotin biosynth 99.8 5.1E-19 1.1E-23 132.0 16.4 106 34-147 34-139 (240)
41 PRK00107 gidB 16S rRNA methylt 99.8 1.4E-18 3E-23 123.6 15.5 145 16-211 23-171 (187)
42 TIGR00477 tehB tellurite resis 99.8 5.1E-19 1.1E-23 127.5 13.2 146 25-208 21-168 (195)
43 TIGR02021 BchM-ChlM magnesium 99.8 7.5E-19 1.6E-23 129.3 13.7 172 19-216 38-213 (219)
44 PF08242 Methyltransf_12: Meth 99.8 2.2E-20 4.8E-25 120.3 3.1 97 39-139 1-99 (99)
45 PRK12335 tellurite resistance 99.8 1.7E-18 3.6E-23 132.1 13.9 138 33-208 119-258 (287)
46 PRK05134 bifunctional 3-demeth 99.8 5.1E-18 1.1E-22 126.1 16.1 167 26-211 40-207 (233)
47 PF08003 Methyltransf_9: Prote 99.8 3E-18 6.5E-23 127.1 13.8 169 19-211 101-269 (315)
48 PF03848 TehB: Tellurite resis 99.8 5.6E-18 1.2E-22 119.6 13.3 148 26-211 22-171 (192)
49 PLN03075 nicotianamine synthas 99.8 1.4E-17 3E-22 124.9 15.8 108 33-143 122-233 (296)
50 TIGR00138 gidB 16S rRNA methyl 99.8 4E-17 8.7E-22 115.9 16.9 114 20-142 25-141 (181)
51 TIGR01983 UbiG ubiquinone bios 99.8 3.9E-17 8.4E-22 120.7 16.4 160 34-211 45-205 (224)
52 PRK04266 fibrillarin; Provisio 99.8 6E-17 1.3E-21 118.6 17.1 143 29-212 67-213 (226)
53 PF13649 Methyltransf_25: Meth 99.8 1.1E-18 2.5E-23 112.7 6.7 96 38-137 1-101 (101)
54 PF05401 NodS: Nodulation prot 99.8 4.4E-17 9.6E-22 113.8 14.8 143 29-213 38-183 (201)
55 TIGR03438 probable methyltrans 99.8 2.8E-17 6.1E-22 126.0 15.2 186 33-220 62-301 (301)
56 PLN02585 magnesium protoporphy 99.8 1.7E-17 3.7E-22 126.8 13.7 164 23-210 130-300 (315)
57 PRK06922 hypothetical protein; 99.8 1.1E-17 2.3E-22 136.4 12.7 112 30-146 414-540 (677)
58 PRK08287 cobalt-precorrin-6Y C 99.8 9.6E-17 2.1E-21 115.2 16.1 141 21-211 18-158 (187)
59 TIGR02081 metW methionine bios 99.8 2.6E-17 5.6E-22 118.8 12.8 157 33-212 12-170 (194)
60 TIGR00537 hemK_rel_arch HemK-r 99.7 2.8E-16 6.2E-21 112.0 17.1 134 28-211 13-167 (179)
61 PTZ00146 fibrillarin; Provisio 99.7 1.7E-16 3.7E-21 118.6 16.6 144 29-211 127-273 (293)
62 PLN02336 phosphoethanolamine N 99.7 2.4E-17 5.1E-22 134.5 12.8 149 24-206 27-179 (475)
63 KOG2361 Predicted methyltransf 99.7 1.8E-17 3.8E-22 118.2 10.3 173 17-207 52-235 (264)
64 PRK11705 cyclopropane fatty ac 99.7 4.9E-17 1.1E-21 128.1 13.8 112 25-147 158-271 (383)
65 PRK13944 protein-L-isoaspartat 99.7 7.5E-17 1.6E-21 117.2 12.9 114 22-143 60-173 (205)
66 TIGR03587 Pse_Me-ase pseudamin 99.7 1.4E-16 3.1E-21 115.2 13.7 105 32-148 41-147 (204)
67 PRK07580 Mg-protoporphyrin IX 99.7 2E-16 4.3E-21 117.4 14.9 156 33-214 62-219 (230)
68 PRK00121 trmB tRNA (guanine-N( 99.7 9.2E-17 2E-21 116.4 11.9 106 34-143 40-156 (202)
69 TIGR02469 CbiT precorrin-6Y C5 99.7 2.1E-16 4.6E-21 105.9 12.9 115 22-143 7-122 (124)
70 PRK00377 cbiT cobalt-precorrin 99.7 6.2E-16 1.3E-20 111.9 15.7 115 23-142 29-144 (198)
71 smart00138 MeTrc Methyltransfe 99.7 7.1E-17 1.5E-21 121.3 11.0 110 34-143 99-242 (264)
72 TIGR03840 TMPT_Se_Te thiopurin 99.7 6.4E-16 1.4E-20 112.3 15.3 111 33-146 33-155 (213)
73 PRK13942 protein-L-isoaspartat 99.7 2E-16 4.3E-21 115.4 12.6 113 21-142 63-175 (212)
74 PF05175 MTS: Methyltransferas 99.7 1.9E-16 4.1E-21 111.8 11.5 116 24-144 21-141 (170)
75 TIGR00080 pimt protein-L-isoas 99.7 5.9E-16 1.3E-20 113.4 13.3 112 22-142 65-176 (215)
76 TIGR03534 RF_mod_PrmC protein- 99.7 1.8E-15 3.8E-20 113.8 16.3 144 24-215 78-247 (251)
77 PRK14968 putative methyltransf 99.7 2.9E-15 6.2E-20 107.7 16.7 150 27-222 16-188 (188)
78 PRK14966 unknown domain/N5-glu 99.7 3.1E-15 6.8E-20 117.0 17.7 142 33-221 250-417 (423)
79 PRK15001 SAM-dependent 23S rib 99.7 6.6E-16 1.4E-20 120.6 13.7 119 23-143 217-340 (378)
80 PRK09328 N5-glutamine S-adenos 99.7 4.1E-15 8.9E-20 113.2 17.5 154 22-222 96-275 (275)
81 COG2242 CobL Precorrin-6B meth 99.7 5.1E-15 1.1E-19 102.6 15.9 116 20-143 20-135 (187)
82 PRK11088 rrmA 23S rRNA methylt 99.7 7.1E-16 1.5E-20 117.0 12.9 98 34-146 85-184 (272)
83 PF00891 Methyltransf_2: O-met 99.7 1.9E-15 4.2E-20 112.8 14.5 144 25-198 91-241 (241)
84 PRK11188 rrmJ 23S rRNA methylt 99.7 3.2E-15 7E-20 108.6 15.0 101 32-146 49-168 (209)
85 TIGR00536 hemK_fam HemK family 99.7 6E-15 1.3E-19 112.4 16.4 156 20-221 99-281 (284)
86 KOG1271 Methyltransferases [Ge 99.7 3.2E-15 6.9E-20 102.2 12.5 146 21-211 50-207 (227)
87 TIGR01177 conserved hypothetic 99.7 2.6E-15 5.7E-20 116.8 13.7 118 21-144 169-295 (329)
88 PRK13255 thiopurine S-methyltr 99.7 6.1E-15 1.3E-19 107.6 14.7 112 31-145 34-157 (218)
89 TIGR00091 tRNA (guanine-N(7)-) 99.7 1.2E-15 2.6E-20 110.0 10.4 107 33-143 15-132 (194)
90 PRK00517 prmA ribosomal protei 99.7 6.8E-15 1.5E-19 110.2 14.8 132 33-222 118-249 (250)
91 TIGR03533 L3_gln_methyl protei 99.6 1.9E-14 4.2E-19 109.4 16.9 106 33-142 120-250 (284)
92 PRK09489 rsmC 16S ribosomal RN 99.6 3.8E-15 8.3E-20 115.6 12.9 114 24-144 186-304 (342)
93 PRK14967 putative methyltransf 99.6 3.2E-14 6.9E-19 104.9 16.6 109 30-145 32-161 (223)
94 PF06080 DUF938: Protein of un 99.6 1.7E-14 3.8E-19 102.1 13.8 176 24-219 16-202 (204)
95 PF12147 Methyltransf_20: Puta 99.6 2.4E-14 5.1E-19 105.5 14.9 171 33-222 134-311 (311)
96 COG4123 Predicted O-methyltran 99.6 8E-15 1.7E-19 107.0 12.5 114 26-142 36-169 (248)
97 PRK14121 tRNA (guanine-N(7)-)- 99.6 1.1E-14 2.3E-19 113.4 13.1 114 26-143 114-235 (390)
98 COG4976 Predicted methyltransf 99.6 1.1E-15 2.5E-20 108.1 7.0 170 4-211 91-267 (287)
99 COG2519 GCD14 tRNA(1-methylade 99.6 1.9E-14 4.2E-19 104.2 13.2 114 24-145 84-197 (256)
100 COG2264 PrmA Ribosomal protein 99.6 2.2E-14 4.7E-19 107.5 13.8 139 33-222 161-299 (300)
101 PF01135 PCMT: Protein-L-isoas 99.6 5.8E-15 1.3E-19 106.6 10.4 116 20-144 58-173 (209)
102 PF06325 PrmA: Ribosomal prote 99.6 2.3E-14 5.1E-19 108.3 13.2 136 32-222 159-294 (295)
103 COG2813 RsmC 16S RNA G1207 met 99.6 1.3E-14 2.9E-19 108.0 11.5 125 14-144 138-267 (300)
104 TIGR00406 prmA ribosomal prote 99.6 3.6E-14 7.9E-19 108.3 14.2 104 33-145 158-261 (288)
105 PRK11805 N5-glutamine S-adenos 99.6 1.2E-13 2.5E-18 106.1 16.8 103 36-142 135-262 (307)
106 PF13659 Methyltransf_26: Meth 99.6 5.1E-15 1.1E-19 98.2 8.1 106 35-144 1-116 (117)
107 PRK01544 bifunctional N5-gluta 99.6 9.3E-14 2E-18 113.4 17.0 139 35-219 139-303 (506)
108 PRK07402 precorrin-6B methylas 99.6 4.9E-14 1.1E-18 101.9 13.4 117 20-144 26-143 (196)
109 PHA03411 putative methyltransf 99.6 7.8E-14 1.7E-18 103.3 13.8 126 34-204 64-209 (279)
110 PRK00811 spermidine synthase; 99.6 5.8E-14 1.3E-18 106.7 13.5 109 33-142 75-190 (283)
111 PRK13943 protein-L-isoaspartat 99.6 2.9E-14 6.3E-19 109.4 11.6 114 21-143 67-180 (322)
112 PF08704 GCD14: tRNA methyltra 99.6 6.5E-14 1.4E-18 103.2 12.9 113 25-144 31-147 (247)
113 PRK14901 16S rRNA methyltransf 99.6 9.4E-14 2E-18 111.8 14.6 119 24-145 242-386 (434)
114 PRK00312 pcm protein-L-isoaspa 99.6 7.1E-14 1.5E-18 102.3 12.7 111 22-144 66-176 (212)
115 PF05219 DREV: DREV methyltran 99.6 8.9E-14 1.9E-18 101.3 12.7 95 34-143 94-188 (265)
116 COG2518 Pcm Protein-L-isoaspar 99.6 7.6E-14 1.6E-18 99.0 12.0 112 21-144 59-170 (209)
117 PF05891 Methyltransf_PK: AdoM 99.6 1.3E-14 2.8E-19 103.3 7.7 148 34-212 55-204 (218)
118 TIGR03704 PrmC_rel_meth putati 99.5 9.5E-13 2.1E-17 98.4 16.9 115 21-142 72-215 (251)
119 COG2890 HemK Methylase of poly 99.5 1.1E-12 2.3E-17 99.3 17.2 137 37-221 113-275 (280)
120 PRK14903 16S rRNA methyltransf 99.5 2.2E-13 4.7E-18 109.3 14.1 129 25-156 228-379 (431)
121 TIGR00446 nop2p NOL1/NOP2/sun 99.5 2.5E-13 5.5E-18 102.4 13.5 116 28-146 65-202 (264)
122 TIGR00563 rsmB ribosomal RNA s 99.5 3.3E-13 7.1E-18 108.5 14.1 121 24-147 228-372 (426)
123 PRK14904 16S rRNA methyltransf 99.5 5.3E-13 1.2E-17 107.8 14.8 118 26-147 242-381 (445)
124 PF05148 Methyltransf_8: Hypot 99.5 1.2E-12 2.7E-17 92.3 14.3 131 26-219 63-194 (219)
125 KOG1541 Predicted protein carb 99.5 3.6E-13 7.8E-18 95.0 11.4 111 23-144 37-161 (270)
126 TIGR00438 rrmJ cell division p 99.5 9.4E-13 2E-17 94.6 13.9 100 31-144 29-147 (188)
127 KOG2899 Predicted methyltransf 99.5 6E-13 1.3E-17 95.2 11.8 106 33-141 57-207 (288)
128 PRK10901 16S rRNA methyltransf 99.5 1.2E-12 2.7E-17 105.2 14.8 116 25-145 235-374 (427)
129 PRK13256 thiopurine S-methyltr 99.5 1.6E-12 3.5E-17 94.6 13.9 111 32-145 41-165 (226)
130 cd02440 AdoMet_MTases S-adenos 99.5 4.3E-13 9.3E-18 86.6 10.0 101 37-142 1-103 (107)
131 PRK04457 spermidine synthase; 99.5 6.3E-13 1.4E-17 99.9 11.8 111 33-146 65-180 (262)
132 PRK01581 speE spermidine synth 99.5 5E-12 1.1E-16 97.3 16.6 153 32-222 148-313 (374)
133 PF05724 TPMT: Thiopurine S-me 99.5 1.9E-12 4.2E-17 94.3 13.5 145 30-209 33-190 (218)
134 PRK14902 16S rRNA methyltransf 99.5 1.8E-12 3.8E-17 104.9 14.6 117 25-145 241-381 (444)
135 PLN02781 Probable caffeoyl-CoA 99.5 6.5E-13 1.4E-17 98.2 10.7 113 26-143 60-178 (234)
136 PF03291 Pox_MCEL: mRNA cappin 99.5 6.6E-13 1.4E-17 102.4 10.3 110 34-145 62-188 (331)
137 PRK03612 spermidine synthase; 99.4 1.6E-12 3.5E-17 106.7 12.3 110 33-143 296-415 (521)
138 smart00650 rADc Ribosomal RNA 99.4 1.4E-12 3E-17 92.1 10.4 107 25-142 4-112 (169)
139 KOG3045 Predicted RNA methylas 99.4 7.1E-12 1.5E-16 90.6 13.7 129 27-220 172-301 (325)
140 PLN02366 spermidine synthase 99.4 1.3E-11 2.9E-16 94.4 15.1 110 32-142 89-205 (308)
141 TIGR00417 speE spermidine synt 99.4 7E-12 1.5E-16 95.0 13.4 109 33-142 71-185 (270)
142 KOG3010 Methyltransferase [Gen 99.4 2.9E-12 6.3E-17 91.8 10.2 104 37-146 36-140 (261)
143 KOG3178 Hydroxyindole-O-methyl 99.4 1.9E-11 4.1E-16 92.7 13.5 154 35-213 178-334 (342)
144 KOG2940 Predicted methyltransf 99.4 6.6E-13 1.4E-17 94.3 5.1 155 34-208 72-226 (325)
145 PF01596 Methyltransf_3: O-met 99.4 3.6E-12 7.8E-17 91.9 8.5 110 29-143 40-155 (205)
146 COG4122 Predicted O-methyltran 99.4 6.2E-12 1.3E-16 90.7 9.4 117 25-146 50-169 (219)
147 PLN02672 methionine S-methyltr 99.4 2.9E-11 6.3E-16 105.1 15.1 106 35-141 119-276 (1082)
148 PLN02476 O-methyltransferase 99.3 2.2E-11 4.9E-16 91.2 11.9 114 26-144 110-229 (278)
149 KOG1975 mRNA cap methyltransfe 99.3 9.3E-12 2E-16 92.8 9.1 112 32-145 115-239 (389)
150 PF02390 Methyltransf_4: Putat 99.3 1.6E-11 3.4E-16 88.2 10.1 103 36-142 19-132 (195)
151 PRK13168 rumA 23S rRNA m(5)U19 99.3 6.2E-11 1.3E-15 96.0 14.3 114 20-143 283-400 (443)
152 COG2521 Predicted archaeal met 99.3 1.7E-11 3.6E-16 87.5 9.6 150 29-216 129-284 (287)
153 COG3963 Phospholipid N-methylt 99.3 6.5E-11 1.4E-15 80.2 11.7 121 20-148 34-161 (194)
154 KOG1331 Predicted methyltransf 99.3 1.6E-11 3.5E-16 90.3 9.1 129 4-146 15-146 (293)
155 PRK10611 chemotaxis methyltran 99.3 2.1E-11 4.6E-16 92.0 10.0 108 35-142 116-261 (287)
156 PHA03412 putative methyltransf 99.3 1.7E-11 3.7E-16 89.0 8.9 96 34-138 49-158 (241)
157 PF01739 CheR: CheR methyltran 99.3 2E-11 4.3E-16 87.4 8.9 109 34-142 31-174 (196)
158 PRK11783 rlmL 23S rRNA m(2)G24 99.3 7.4E-11 1.6E-15 100.3 13.2 107 34-143 538-656 (702)
159 TIGR03439 methyl_EasF probable 99.3 9.7E-11 2.1E-15 89.8 12.1 184 32-218 74-318 (319)
160 PRK11727 23S rRNA mA1618 methy 99.3 1.1E-10 2.5E-15 89.4 12.3 84 34-120 114-203 (321)
161 PRK15128 23S rRNA m(5)C1962 me 99.3 1.4E-10 3.1E-15 91.8 12.9 108 33-143 219-339 (396)
162 COG0220 Predicted S-adenosylme 99.2 1.3E-10 2.9E-15 84.8 11.1 104 35-142 49-163 (227)
163 PRK10909 rsmD 16S rRNA m(2)G96 99.2 2.8E-10 6E-15 81.8 12.4 118 22-145 40-161 (199)
164 KOG3191 Predicted N6-DNA-methy 99.2 1.1E-09 2.4E-14 75.3 14.4 132 35-212 44-196 (209)
165 PLN02589 caffeoyl-CoA O-methyl 99.2 5.5E-11 1.2E-15 88.1 8.4 113 26-143 71-190 (247)
166 COG0421 SpeE Spermidine syntha 99.2 7.4E-10 1.6E-14 83.5 14.4 110 31-142 74-189 (282)
167 PRK03522 rumB 23S rRNA methylu 99.2 1.4E-10 3E-15 89.9 10.5 109 26-143 165-274 (315)
168 COG1041 Predicted DNA modifica 99.2 6.4E-10 1.4E-14 84.8 13.6 121 18-144 181-311 (347)
169 PF11968 DUF3321: Putative met 99.2 5.8E-10 1.3E-14 79.4 11.7 120 36-211 53-183 (219)
170 TIGR00479 rumA 23S rRNA (uraci 99.2 8.8E-10 1.9E-14 89.1 14.1 110 24-142 282-395 (431)
171 PF10294 Methyltransf_16: Puta 99.2 5.1E-10 1.1E-14 79.1 11.1 113 32-146 43-159 (173)
172 PF04672 Methyltransf_19: S-ad 99.2 1E-09 2.3E-14 81.1 12.4 163 20-206 53-233 (267)
173 PRK14896 ksgA 16S ribosomal RN 99.2 3.7E-10 8E-15 85.0 10.2 90 19-118 14-103 (258)
174 PRK00536 speE spermidine synth 99.2 1.8E-09 3.9E-14 80.5 13.3 101 31-142 69-170 (262)
175 KOG2904 Predicted methyltransf 99.1 1.9E-09 4E-14 79.0 12.9 125 18-145 129-287 (328)
176 KOG1499 Protein arginine N-met 99.1 2.4E-10 5.3E-15 86.7 8.6 113 23-140 49-164 (346)
177 COG2263 Predicted RNA methylas 99.1 5.3E-10 1.1E-14 77.7 9.0 80 31-119 42-121 (198)
178 PLN02823 spermine synthase 99.1 2.1E-09 4.4E-14 83.3 12.8 109 33-142 102-219 (336)
179 KOG1661 Protein-L-isoaspartate 99.1 6.4E-10 1.4E-14 78.3 8.9 114 24-143 70-193 (237)
180 PRK00274 ksgA 16S ribosomal RN 99.1 6.1E-10 1.3E-14 84.5 9.6 89 20-117 28-116 (272)
181 PTZ00338 dimethyladenosine tra 99.1 6.6E-10 1.4E-14 84.7 9.3 91 20-117 22-112 (294)
182 PF05185 PRMT5: PRMT5 arginine 99.1 1.7E-09 3.7E-14 87.0 12.1 103 35-140 187-294 (448)
183 PF01170 UPF0020: Putative RNA 99.1 2.2E-09 4.7E-14 76.3 11.3 114 19-135 13-143 (179)
184 PRK11933 yebU rRNA (cytosine-C 99.1 4E-09 8.6E-14 85.2 13.3 112 31-145 110-244 (470)
185 PF03059 NAS: Nicotianamine sy 99.1 6E-09 1.3E-13 78.0 13.1 106 35-142 121-229 (276)
186 TIGR00755 ksgA dimethyladenosi 99.1 4.2E-09 9.2E-14 79.2 12.3 89 19-117 14-105 (253)
187 PF01269 Fibrillarin: Fibrilla 99.1 1.3E-08 2.9E-13 72.9 13.9 103 29-142 68-177 (229)
188 COG1352 CheR Methylase of chem 99.1 3.4E-09 7.3E-14 79.2 11.3 109 35-143 97-241 (268)
189 TIGR00478 tly hemolysin TlyA f 99.0 7.6E-09 1.7E-13 75.8 12.6 91 33-142 74-170 (228)
190 PRK04148 hypothetical protein; 99.0 8E-09 1.7E-13 68.7 11.5 107 24-148 6-114 (134)
191 TIGR02085 meth_trns_rumB 23S r 99.0 3.1E-09 6.8E-14 84.1 11.2 108 27-143 226-334 (374)
192 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.0 2E-09 4.3E-14 79.8 8.7 147 34-209 56-239 (256)
193 KOG2915 tRNA(1-methyladenosine 99.0 1.4E-08 3E-13 74.4 12.5 108 24-138 95-204 (314)
194 PF01564 Spermine_synth: Sperm 99.0 3.2E-09 7E-14 79.1 8.6 111 32-143 74-191 (246)
195 PF09243 Rsm22: Mitochondrial 99.0 1.2E-08 2.6E-13 77.3 11.4 111 34-149 33-145 (274)
196 PRK01544 bifunctional N5-gluta 99.0 4.9E-09 1.1E-13 86.0 9.8 105 34-142 347-461 (506)
197 COG1092 Predicted SAM-dependen 99.0 1E-08 2.2E-13 80.5 10.8 120 19-145 205-338 (393)
198 PRK00050 16S rRNA m(4)C1402 me 98.9 3.5E-09 7.5E-14 80.4 7.7 93 22-119 7-103 (296)
199 KOG3420 Predicted RNA methylas 98.9 4.4E-09 9.5E-14 69.7 6.6 88 26-119 40-127 (185)
200 PF07942 N2227: N2227-like pro 98.9 9E-08 1.9E-12 71.5 14.0 147 34-209 56-242 (270)
201 PF02475 Met_10: Met-10+ like- 98.9 1.1E-08 2.5E-13 73.3 8.9 100 32-139 99-198 (200)
202 TIGR00095 RNA methyltransferas 98.9 4.7E-08 1E-12 70.0 12.0 119 20-143 34-159 (189)
203 KOG3987 Uncharacterized conser 98.9 2.3E-10 5.1E-15 80.3 0.0 92 35-141 113-205 (288)
204 PRK04338 N(2),N(2)-dimethylgua 98.9 1.8E-08 3.9E-13 79.7 10.4 111 24-142 46-157 (382)
205 PF02527 GidB: rRNA small subu 98.9 7.5E-08 1.6E-12 68.3 12.3 115 19-142 28-147 (184)
206 KOG1663 O-methyltransferase [S 98.9 3.2E-08 6.8E-13 71.0 10.3 112 27-143 66-183 (237)
207 PF03602 Cons_hypoth95: Conser 98.9 1.8E-08 3.9E-13 71.7 8.7 123 20-146 26-156 (183)
208 COG0030 KsgA Dimethyladenosine 98.9 2.5E-08 5.5E-13 73.8 9.6 90 20-117 16-106 (259)
209 COG0293 FtsJ 23S rRNA methylas 98.8 2.8E-07 6.1E-12 65.7 13.8 104 32-149 43-165 (205)
210 KOG1500 Protein arginine N-met 98.8 3.1E-08 6.7E-13 74.8 9.3 115 21-141 164-280 (517)
211 COG0144 Sun tRNA and rRNA cyto 98.8 2.4E-07 5.3E-12 72.8 14.1 119 26-147 148-292 (355)
212 COG4798 Predicted methyltransf 98.8 6.3E-08 1.4E-12 67.6 9.4 157 26-210 40-206 (238)
213 KOG0820 Ribosomal RNA adenine 98.8 5.3E-08 1.1E-12 71.5 8.7 86 24-116 48-133 (315)
214 PF02384 N6_Mtase: N-6 DNA Met 98.8 7.5E-08 1.6E-12 74.7 10.2 124 20-144 32-184 (311)
215 TIGR02143 trmA_only tRNA (urac 98.8 8.4E-08 1.8E-12 75.4 10.4 109 23-143 187-311 (353)
216 COG4262 Predicted spermidine s 98.8 2E-07 4.2E-12 71.4 11.5 110 33-143 288-407 (508)
217 PF10672 Methyltrans_SAM: S-ad 98.8 7.5E-08 1.6E-12 72.8 9.2 119 19-143 111-238 (286)
218 COG4301 Uncharacterized conser 98.7 1.6E-06 3.4E-11 63.0 15.2 201 20-222 64-321 (321)
219 PRK05031 tRNA (uracil-5-)-meth 98.7 1.7E-07 3.7E-12 74.0 10.6 108 24-143 197-320 (362)
220 PF03141 Methyltransf_29: Puta 98.7 2.3E-08 4.9E-13 79.6 5.6 95 36-145 119-221 (506)
221 COG1889 NOP1 Fibrillarin-like 98.7 1.4E-06 3.1E-11 61.4 13.7 105 30-143 72-180 (231)
222 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.7 2E-07 4.3E-12 71.0 9.5 117 26-145 77-221 (283)
223 COG0357 GidB Predicted S-adeno 98.7 9.5E-07 2.1E-11 63.9 12.4 115 18-141 46-166 (215)
224 COG2265 TrmA SAM-dependent met 98.7 6.2E-07 1.3E-11 71.9 12.0 115 19-143 278-396 (432)
225 PF08123 DOT1: Histone methyla 98.6 1.2E-07 2.7E-12 68.4 7.3 116 24-141 32-156 (205)
226 KOG1269 SAM-dependent methyltr 98.6 9.6E-08 2.1E-12 74.6 7.2 111 31-145 107-217 (364)
227 COG2520 Predicted methyltransf 98.6 2.1E-06 4.5E-11 66.4 13.8 108 33-148 187-294 (341)
228 PF01728 FtsJ: FtsJ-like methy 98.6 4.4E-08 9.5E-13 70.0 4.3 99 34-146 23-142 (181)
229 COG0500 SmtA SAM-dependent met 98.6 3.6E-06 7.8E-11 59.1 14.3 106 38-148 52-160 (257)
230 PF04816 DUF633: Family of unk 98.6 1.5E-06 3.4E-11 62.8 12.1 135 38-220 1-137 (205)
231 KOG3201 Uncharacterized conser 98.6 2.5E-08 5.5E-13 67.4 2.5 113 32-144 27-141 (201)
232 COG0742 N6-adenine-specific me 98.6 1.4E-06 3E-11 61.3 11.0 120 20-143 27-154 (187)
233 PRK11760 putative 23S rRNA C24 98.6 7.5E-06 1.6E-10 63.0 15.7 87 33-136 210-296 (357)
234 PRK11783 rlmL 23S rRNA m(2)G24 98.5 1.7E-06 3.6E-11 74.2 12.2 123 20-144 175-348 (702)
235 COG3897 Predicted methyltransf 98.5 1.4E-06 3.1E-11 61.0 8.9 108 31-148 76-184 (218)
236 PF13679 Methyltransf_32: Meth 98.5 2.7E-06 5.9E-11 58.1 10.3 96 33-131 24-122 (141)
237 TIGR00308 TRM1 tRNA(guanine-26 98.5 1.2E-06 2.6E-11 69.1 9.6 101 36-143 46-147 (374)
238 PF00398 RrnaAD: Ribosomal RNA 98.5 1.7E-06 3.6E-11 65.5 10.0 102 19-131 15-119 (262)
239 PF09445 Methyltransf_15: RNA 98.4 3.1E-07 6.6E-12 63.5 4.6 76 37-117 2-80 (163)
240 COG0116 Predicted N6-adenine-s 98.4 3.9E-06 8.4E-11 65.4 11.0 121 20-142 177-343 (381)
241 KOG4589 Cell division protein 98.4 8.2E-06 1.8E-10 56.9 10.4 104 32-149 67-190 (232)
242 TIGR00006 S-adenosyl-methyltra 98.4 2.6E-06 5.7E-11 65.0 8.6 93 21-118 7-104 (305)
243 PF13578 Methyltransf_24: Meth 98.4 2.3E-07 4.9E-12 60.2 2.2 101 39-143 1-105 (106)
244 PF05958 tRNA_U5-meth_tr: tRNA 98.3 4E-06 8.7E-11 66.0 8.9 74 20-100 183-256 (352)
245 TIGR02987 met_A_Alw26 type II 98.3 8.9E-06 1.9E-10 67.7 11.1 82 34-118 31-124 (524)
246 COG1189 Predicted rRNA methyla 98.3 3.6E-05 7.9E-10 56.0 12.6 144 33-210 78-225 (245)
247 COG4076 Predicted RNA methylas 98.3 1.7E-06 3.8E-11 60.2 5.4 99 35-141 33-133 (252)
248 KOG1122 tRNA and rRNA cytosine 98.3 1.5E-05 3.2E-10 62.4 10.4 113 29-145 236-373 (460)
249 KOG2730 Methylase [General fun 98.2 1.4E-06 3.1E-11 62.1 4.3 99 34-137 94-196 (263)
250 KOG1596 Fibrillarin and relate 98.2 7.4E-06 1.6E-10 59.4 7.7 104 28-143 150-261 (317)
251 COG4627 Uncharacterized protei 98.2 9.6E-07 2.1E-11 59.4 2.4 56 90-145 31-88 (185)
252 KOG1709 Guanidinoacetate methy 98.2 2.8E-05 6E-10 55.6 9.8 108 33-146 100-209 (271)
253 KOG2352 Predicted spermine/spe 98.2 2.3E-05 4.9E-10 62.7 10.3 106 33-144 46-162 (482)
254 PF07091 FmrO: Ribosomal RNA m 98.1 2.3E-05 5.1E-10 57.6 8.9 82 33-120 104-185 (251)
255 PF06962 rRNA_methylase: Putat 98.1 2.4E-05 5.1E-10 52.6 7.9 84 61-146 1-95 (140)
256 COG2384 Predicted SAM-dependen 98.1 0.00025 5.4E-09 51.1 12.5 140 34-221 16-157 (226)
257 PRK10742 putative methyltransf 98.0 4.6E-05 1E-09 56.2 8.3 93 24-119 76-177 (250)
258 PF01861 DUF43: Protein of unk 98.0 0.0016 3.4E-08 47.9 15.7 100 33-139 43-144 (243)
259 TIGR01444 fkbM_fam methyltrans 98.0 2.5E-05 5.4E-10 53.4 6.0 59 37-99 1-59 (143)
260 KOG3115 Methyltransferase-like 98.0 2.8E-05 6E-10 55.0 6.0 107 36-143 62-183 (249)
261 KOG2187 tRNA uracil-5-methyltr 98.0 0.00011 2.3E-09 59.3 9.9 117 20-143 369-490 (534)
262 TIGR00027 mthyl_TIGR00027 meth 97.9 0.00095 2.1E-08 50.4 13.8 169 21-207 69-248 (260)
263 PLN02668 indole-3-acetate carb 97.9 0.00069 1.5E-08 53.7 13.1 113 35-147 64-241 (386)
264 COG5459 Predicted rRNA methyla 97.9 6.5E-05 1.4E-09 57.6 7.1 113 34-149 113-231 (484)
265 PF03141 Methyltransf_29: Puta 97.8 0.00014 3.1E-09 58.5 8.9 131 35-222 366-506 (506)
266 PF05971 Methyltransf_10: Prot 97.8 0.0003 6.5E-09 53.6 10.0 83 35-121 103-192 (299)
267 PF04989 CmcI: Cephalosporin h 97.8 0.00025 5.3E-09 51.0 8.9 106 34-144 32-148 (206)
268 COG0275 Predicted S-adenosylme 97.8 0.00025 5.4E-09 53.5 9.2 94 20-117 9-107 (314)
269 KOG2798 Putative trehalase [Ca 97.8 0.00021 4.6E-09 54.0 8.8 148 35-210 151-338 (369)
270 KOG1099 SAM-dependent methyltr 97.8 0.0003 6.6E-09 50.9 9.1 100 35-148 42-168 (294)
271 PF01795 Methyltransf_5: MraW 97.8 0.00016 3.4E-09 55.4 8.1 91 22-117 8-104 (310)
272 COG1064 AdhP Zn-dependent alco 97.7 0.0013 2.8E-08 51.1 11.9 99 30-146 162-262 (339)
273 PF03269 DUF268: Caenorhabditi 97.6 0.00018 3.9E-09 49.1 5.0 101 35-148 2-116 (177)
274 PF03492 Methyltransf_7: SAM d 97.5 0.0067 1.5E-07 47.6 13.6 116 33-148 15-188 (334)
275 PF04445 SAM_MT: Putative SAM- 97.5 0.00054 1.2E-08 50.3 7.0 90 26-118 65-163 (234)
276 KOG2198 tRNA cytosine-5-methyl 97.3 0.0058 1.3E-07 47.7 11.2 115 29-146 150-299 (375)
277 KOG4058 Uncharacterized conser 97.3 0.0038 8.3E-08 42.1 8.6 115 25-148 63-177 (199)
278 PRK09424 pntA NAD(P) transhydr 97.2 0.0048 1E-07 51.0 10.5 101 32-144 162-286 (509)
279 PF10354 DUF2431: Domain of un 97.2 0.02 4.4E-07 40.1 11.7 140 40-221 2-164 (166)
280 KOG0822 Protein kinase inhibit 97.1 0.0053 1.1E-07 50.0 9.5 105 36-143 369-478 (649)
281 COG0286 HsdM Type I restrictio 97.1 0.011 2.4E-07 48.9 11.5 123 21-145 173-328 (489)
282 KOG2793 Putative N2,N2-dimethy 97.1 0.0059 1.3E-07 45.4 8.9 109 34-145 86-201 (248)
283 PF02636 Methyltransf_28: Puta 97.1 0.0059 1.3E-07 46.0 8.9 47 35-81 19-72 (252)
284 PF11599 AviRa: RRNA methyltra 97.0 0.014 3.1E-07 42.1 9.8 111 33-143 50-214 (246)
285 PF06859 Bin3: Bicoid-interact 97.0 0.00067 1.4E-08 43.4 2.8 37 106-142 1-43 (110)
286 PRK01747 mnmC bifunctional tRN 97.0 0.0064 1.4E-07 52.4 9.7 108 33-140 56-203 (662)
287 PF11312 DUF3115: Protein of u 97.0 0.0014 3E-08 50.0 4.9 111 36-146 88-245 (315)
288 PF02005 TRM: N2,N2-dimethylgu 97.0 0.0032 6.9E-08 50.1 6.9 106 34-144 49-155 (377)
289 KOG1562 Spermidine synthase [A 97.0 0.0034 7.4E-08 47.4 6.6 112 31-143 118-236 (337)
290 COG3315 O-Methyltransferase in 96.8 0.05 1.1E-06 42.0 11.8 172 20-207 79-262 (297)
291 PF03514 GRAS: GRAS domain fam 96.8 0.2 4.4E-06 40.1 15.6 120 24-145 100-245 (374)
292 KOG0024 Sorbitol dehydrogenase 96.7 0.048 1E-06 42.0 10.8 109 28-150 163-280 (354)
293 cd08283 FDH_like_1 Glutathione 96.7 0.033 7.1E-07 44.8 10.8 106 29-144 179-307 (386)
294 COG3510 CmcI Cephalosporin hyd 96.7 0.018 4E-07 40.7 7.9 107 34-148 69-185 (237)
295 COG1565 Uncharacterized conser 96.7 0.012 2.6E-07 45.9 7.6 55 27-81 70-131 (370)
296 KOG2920 Predicted methyltransf 96.6 0.002 4.3E-08 48.4 3.3 107 33-141 115-232 (282)
297 COG1063 Tdh Threonine dehydrog 96.5 0.047 1E-06 43.3 10.5 100 33-148 167-274 (350)
298 TIGR00561 pntA NAD(P) transhyd 96.4 0.017 3.6E-07 47.8 7.4 97 33-141 162-282 (511)
299 PF07757 AdoMet_MTase: Predict 96.2 0.0044 9.6E-08 39.4 2.5 33 34-69 58-90 (112)
300 PF05711 TylF: Macrocin-O-meth 96.1 0.071 1.5E-06 39.9 8.9 109 35-146 75-215 (248)
301 PHA01634 hypothetical protein 96.1 0.049 1.1E-06 35.9 6.9 45 34-80 28-72 (156)
302 KOG2539 Mitochondrial/chloropl 96.0 0.049 1.1E-06 44.0 8.1 110 35-147 201-319 (491)
303 PRK11524 putative methyltransf 96.0 0.016 3.5E-07 44.5 5.3 46 32-80 206-251 (284)
304 cd00315 Cyt_C5_DNA_methylase C 96.0 0.028 6E-07 43.0 6.3 72 37-119 2-75 (275)
305 PRK09880 L-idonate 5-dehydroge 95.9 0.067 1.5E-06 42.2 8.6 101 31-145 166-268 (343)
306 PF02254 TrkA_N: TrkA-N domain 95.9 0.14 2.9E-06 33.4 8.7 86 43-141 4-94 (116)
307 KOG2651 rRNA adenine N-6-methy 95.8 0.032 6.9E-07 43.8 6.0 46 31-78 150-195 (476)
308 PF01555 N6_N4_Mtase: DNA meth 95.8 0.019 4.2E-07 42.2 4.8 43 32-77 189-231 (231)
309 COG1867 TRM1 N2,N2-dimethylgua 95.8 0.074 1.6E-06 41.7 7.8 102 35-144 53-155 (380)
310 cd08254 hydroxyacyl_CoA_DH 6-h 95.7 0.23 4.9E-06 38.9 10.8 96 31-144 162-264 (338)
311 KOG1501 Arginine N-methyltrans 95.6 0.064 1.4E-06 43.1 7.0 92 17-112 43-141 (636)
312 PRK13699 putative methylase; P 95.6 0.075 1.6E-06 39.4 7.2 51 91-141 3-70 (227)
313 PF05430 Methyltransf_30: S-ad 95.6 0.039 8.4E-07 36.7 5.0 78 89-211 32-113 (124)
314 PF00107 ADH_zinc_N: Zinc-bind 95.5 0.18 3.8E-06 33.5 8.2 85 45-146 2-92 (130)
315 PF04072 LCM: Leucine carboxyl 95.4 0.11 2.5E-06 37.0 7.5 107 20-128 63-181 (183)
316 KOG1253 tRNA methyltransferase 95.3 0.016 3.4E-07 47.0 2.8 105 34-144 109-217 (525)
317 PRK13699 putative methylase; P 95.3 0.051 1.1E-06 40.3 5.3 47 33-82 162-208 (227)
318 COG0686 Ald Alanine dehydrogen 95.1 0.074 1.6E-06 40.8 5.8 99 35-142 168-267 (371)
319 TIGR02822 adh_fam_2 zinc-bindi 95.0 0.58 1.3E-05 36.7 11.0 95 30-145 161-256 (329)
320 cd05188 MDR Medium chain reduc 95.0 1.1 2.3E-05 33.7 12.2 96 33-145 133-234 (271)
321 KOG3924 Putative protein methy 94.9 0.22 4.8E-06 39.5 8.1 121 24-147 182-312 (419)
322 cd08237 ribitol-5-phosphate_DH 94.6 0.42 9.1E-06 37.7 9.3 97 32-145 161-258 (341)
323 PTZ00357 methyltransferase; Pr 94.4 0.27 5.9E-06 42.1 7.8 102 37-138 703-830 (1072)
324 TIGR03451 mycoS_dep_FDH mycoth 94.3 0.92 2E-05 36.0 10.8 99 30-145 172-278 (358)
325 cd08230 glucose_DH Glucose deh 94.2 0.38 8.2E-06 38.2 8.2 96 32-146 170-272 (355)
326 KOG1098 Putative SAM-dependent 94.1 0.16 3.4E-06 42.7 5.9 99 32-145 42-159 (780)
327 PF03686 UPF0146: Uncharacteri 93.9 0.49 1.1E-05 31.3 6.8 93 34-147 13-106 (127)
328 KOG2352 Predicted spermine/spe 93.9 0.17 3.7E-06 41.2 5.6 109 35-147 296-420 (482)
329 COG1568 Predicted methyltransf 93.7 0.53 1.1E-05 35.7 7.5 105 34-145 152-262 (354)
330 cd08281 liver_ADH_like1 Zinc-d 93.6 1.1 2.5E-05 35.7 10.0 99 30-145 187-292 (371)
331 PRK11524 putative methyltransf 93.5 0.084 1.8E-06 40.6 3.3 54 89-142 8-79 (284)
332 TIGR03366 HpnZ_proposed putati 93.4 1.2 2.5E-05 34.1 9.5 98 31-145 117-220 (280)
333 COG3129 Predicted SAM-dependen 93.4 0.18 4E-06 37.0 4.6 84 34-120 78-167 (292)
334 KOG2671 Putative RNA methylase 93.4 0.12 2.6E-06 40.3 3.8 113 29-145 203-356 (421)
335 cd08239 THR_DH_like L-threonin 93.4 1.6 3.5E-05 34.2 10.5 99 29-144 158-263 (339)
336 PF12692 Methyltransf_17: S-ad 93.4 0.45 9.9E-06 32.4 6.1 106 24-141 19-132 (160)
337 COG2933 Predicted SAM-dependen 93.3 0.49 1.1E-05 35.6 6.7 88 32-136 209-296 (358)
338 cd08232 idonate-5-DH L-idonate 93.1 1.7 3.7E-05 34.1 10.3 93 34-143 165-262 (339)
339 PLN03154 putative allyl alcoho 93.1 2.5 5.4E-05 33.5 11.2 98 30-144 154-259 (348)
340 cd00401 AdoHcyase S-adenosyl-L 93.0 1.3 2.9E-05 36.0 9.3 90 33-145 200-291 (413)
341 TIGR00518 alaDH alanine dehydr 93.0 0.21 4.5E-06 40.0 4.8 100 34-142 166-266 (370)
342 PF11899 DUF3419: Protein of u 92.3 0.34 7.4E-06 38.8 5.2 60 88-147 275-338 (380)
343 TIGR01202 bchC 2-desacetyl-2-h 92.3 1.1 2.4E-05 34.8 8.1 88 34-145 144-233 (308)
344 TIGR02825 B4_12hDH leukotriene 92.3 4.4 9.6E-05 31.6 11.6 98 28-143 132-237 (325)
345 PF06460 NSP13: Coronavirus NS 92.2 1.9 4.1E-05 32.5 8.4 96 30-141 57-167 (299)
346 PRK10309 galactitol-1-phosphat 92.2 2.8 6.1E-05 33.1 10.3 99 30-145 156-262 (347)
347 PF05206 TRM13: Methyltransfer 92.0 0.64 1.4E-05 35.2 6.1 37 33-69 17-57 (259)
348 PLN02740 Alcohol dehydrogenase 91.9 3 6.6E-05 33.5 10.3 99 30-145 194-302 (381)
349 PF10017 Methyltransf_33: Hist 91.7 0.41 9E-06 31.9 4.4 34 186-219 94-127 (127)
350 cd08294 leukotriene_B4_DH_like 91.7 4.1 8.9E-05 31.7 10.7 98 28-143 137-241 (329)
351 cd08255 2-desacetyl-2-hydroxye 91.5 3.5 7.7E-05 31.2 9.9 98 29-144 92-191 (277)
352 PF00145 DNA_methylase: C-5 cy 91.3 0.34 7.3E-06 37.9 4.3 70 37-119 2-74 (335)
353 PF14740 DUF4471: Domain of un 91.2 0.57 1.2E-05 35.9 5.1 33 105-142 221-253 (289)
354 COG1255 Uncharacterized protei 91.2 2.9 6.2E-05 27.3 8.6 92 35-147 14-106 (129)
355 KOG2918 Carboxymethyl transfer 91.2 5.9 0.00013 30.8 12.5 43 33-75 86-129 (335)
356 cd08245 CAD Cinnamyl alcohol d 90.9 4.6 0.0001 31.5 10.3 97 30-143 158-256 (330)
357 PLN02586 probable cinnamyl alc 90.9 2.5 5.4E-05 33.7 8.8 97 32-144 181-279 (360)
358 PF11899 DUF3419: Protein of u 90.8 1 2.3E-05 36.1 6.5 53 26-81 27-79 (380)
359 COG0287 TyrA Prephenate dehydr 90.8 1.5 3.2E-05 33.7 7.1 106 36-159 4-112 (279)
360 cd05285 sorbitol_DH Sorbitol d 90.8 5.1 0.00011 31.5 10.5 100 28-144 156-266 (343)
361 KOG0023 Alcohol dehydrogenase, 90.7 1.9 4.2E-05 33.6 7.4 99 31-147 178-283 (360)
362 PF02737 3HCDH_N: 3-hydroxyacy 90.5 1.8 3.8E-05 30.9 6.9 100 37-144 1-115 (180)
363 cd08261 Zn_ADH7 Alcohol dehydr 90.4 5.2 0.00011 31.3 10.2 102 28-144 153-259 (337)
364 KOG1227 Putative methyltransfe 90.4 0.75 1.6E-05 35.3 5.0 126 8-145 171-299 (351)
365 cd08234 threonine_DH_like L-th 90.1 5.4 0.00012 31.1 10.1 100 28-144 153-258 (334)
366 TIGR02819 fdhA_non_GSH formald 90.1 8.2 0.00018 31.3 11.2 105 30-145 181-301 (393)
367 PRK08293 3-hydroxybutyryl-CoA 89.9 0.61 1.3E-05 35.9 4.5 97 36-139 4-116 (287)
368 PRK06940 short chain dehydroge 89.8 5.7 0.00012 30.2 9.7 99 37-141 4-123 (275)
369 KOG2360 Proliferation-associat 89.7 0.68 1.5E-05 36.7 4.4 69 29-100 208-276 (413)
370 TIGR00675 dcm DNA-methyltransf 89.6 0.86 1.9E-05 35.7 5.1 70 38-119 1-72 (315)
371 PF05050 Methyltransf_21: Meth 89.6 0.74 1.6E-05 31.8 4.4 39 40-78 1-42 (167)
372 cd08293 PTGR2 Prostaglandin re 89.6 7 0.00015 30.7 10.4 96 31-143 149-254 (345)
373 TIGR02818 adh_III_F_hyde S-(hy 89.5 7.7 0.00017 31.0 10.6 99 30-145 181-289 (368)
374 PRK03562 glutathione-regulated 89.4 3.8 8.3E-05 35.4 9.2 92 35-141 400-496 (621)
375 TIGR03201 dearomat_had 6-hydro 89.3 7.5 0.00016 30.8 10.3 47 30-78 162-209 (349)
376 KOG0821 Predicted ribosomal RN 89.0 1.6 3.4E-05 32.1 5.6 63 31-99 47-109 (326)
377 cd05278 FDH_like Formaldehyde 88.9 6.1 0.00013 31.0 9.6 97 31-143 164-267 (347)
378 PF07279 DUF1442: Protein of u 88.7 7.7 0.00017 28.4 10.1 104 31-142 38-147 (218)
379 PRK03659 glutathione-regulated 88.5 2.8 6.2E-05 36.0 7.9 93 36-143 401-498 (601)
380 cd08285 NADP_ADH NADP(H)-depen 88.5 11 0.00023 29.8 10.8 99 30-145 162-268 (351)
381 COG1748 LYS9 Saccharopine dehy 88.5 2.2 4.7E-05 34.4 6.6 74 36-117 2-79 (389)
382 TIGR00497 hsdM type I restrict 88.4 11 0.00023 31.8 11.0 110 34-144 217-356 (501)
383 cd08242 MDR_like Medium chain 88.4 10 0.00022 29.4 10.4 94 29-142 150-244 (319)
384 PF02153 PDH: Prephenate dehyd 88.1 1.3 2.8E-05 33.5 5.1 91 50-159 3-93 (258)
385 PRK07502 cyclohexadienyl dehyd 88.0 4 8.6E-05 31.8 7.8 90 35-140 6-97 (307)
386 cd08300 alcohol_DH_class_III c 88.0 11 0.00025 30.0 10.6 99 30-145 182-290 (368)
387 cd08231 MDR_TM0436_like Hypoth 87.9 12 0.00026 29.7 11.1 95 33-144 176-281 (361)
388 PLN02827 Alcohol dehydrogenase 87.6 10 0.00023 30.4 10.2 98 30-144 189-296 (378)
389 cd08236 sugar_DH NAD(P)-depend 87.6 12 0.00025 29.4 10.4 98 29-143 154-258 (343)
390 PRK10458 DNA cytosine methylas 87.5 4.7 0.0001 33.5 8.2 43 35-79 88-130 (467)
391 PRK05786 fabG 3-ketoacyl-(acyl 87.3 9.6 0.00021 28.0 9.7 104 35-144 5-136 (238)
392 PF02558 ApbA: Ketopantoate re 87.3 1.4 3E-05 30.1 4.5 98 38-142 1-100 (151)
393 TIGR00936 ahcY adenosylhomocys 87.0 4.4 9.6E-05 32.9 7.7 90 33-145 193-284 (406)
394 cd08295 double_bond_reductase_ 87.0 13 0.00028 29.2 10.5 100 29-143 146-251 (338)
395 cd08238 sorbose_phosphate_red 87.0 15 0.00032 30.0 10.8 105 31-142 172-287 (410)
396 PRK07819 3-hydroxybutyryl-CoA 86.9 5.7 0.00012 30.7 8.0 97 36-141 6-119 (286)
397 PRK08306 dipicolinate synthase 86.7 4.5 9.8E-05 31.4 7.4 90 34-143 151-241 (296)
398 PRK05808 3-hydroxybutyryl-CoA 86.6 4.3 9.2E-05 31.2 7.2 94 37-139 5-114 (282)
399 COG0270 Dcm Site-specific DNA 86.6 2.6 5.5E-05 33.3 6.1 75 35-119 3-80 (328)
400 PLN02514 cinnamyl-alcohol dehy 86.5 8.3 0.00018 30.7 9.0 97 33-145 179-277 (357)
401 cd08301 alcohol_DH_plants Plan 86.2 12 0.00027 29.8 9.9 99 30-145 183-291 (369)
402 PRK09260 3-hydroxybutyryl-CoA 86.0 3.7 8E-05 31.6 6.6 98 37-142 3-116 (288)
403 KOG2078 tRNA modification enzy 86.0 0.42 9.1E-06 38.4 1.4 64 32-99 247-310 (495)
404 PLN02494 adenosylhomocysteinas 85.9 3.3 7.1E-05 34.3 6.4 90 33-144 252-342 (477)
405 PRK07417 arogenate dehydrogena 85.8 3.7 8E-05 31.5 6.5 82 37-137 2-85 (279)
406 cd08277 liver_alcohol_DH_like 85.7 16 0.00034 29.2 10.3 101 30-145 180-288 (365)
407 PRK05708 2-dehydropantoate 2-r 85.7 15 0.00033 28.6 10.4 97 36-142 3-103 (305)
408 PRK08265 short chain dehydroge 85.6 12 0.00026 28.1 9.2 74 35-116 6-90 (261)
409 PRK05476 S-adenosyl-L-homocyst 85.5 5.8 0.00013 32.5 7.7 90 34-146 211-302 (425)
410 PRK07066 3-hydroxybutyryl-CoA 85.4 2.5 5.5E-05 33.2 5.4 97 35-139 7-115 (321)
411 PF12242 Eno-Rase_NADH_b: NAD( 85.4 4.7 0.0001 24.1 5.2 36 33-68 37-73 (78)
412 COG0604 Qor NADPH:quinone redu 85.4 16 0.00036 28.8 11.4 103 29-146 137-244 (326)
413 PLN02178 cinnamyl-alcohol dehy 85.2 6 0.00013 31.8 7.7 95 33-144 177-274 (375)
414 PF06557 DUF1122: Protein of u 85.1 3.2 7E-05 28.8 5.1 71 123-222 66-139 (170)
415 cd05213 NAD_bind_Glutamyl_tRNA 85.0 11 0.00024 29.4 8.9 39 33-72 176-215 (311)
416 cd08263 Zn_ADH10 Alcohol dehyd 85.0 15 0.00032 29.3 9.8 95 32-143 185-287 (367)
417 PRK12939 short chain dehydroge 84.9 8.1 0.00018 28.6 8.0 78 34-116 6-94 (250)
418 PRK11730 fadB multifunctional 84.8 5.8 0.00013 35.0 7.9 99 36-142 314-427 (715)
419 cd08298 CAD2 Cinnamyl alcohol 84.8 17 0.00036 28.3 10.7 95 28-143 161-256 (329)
420 KOG1209 1-Acyl dihydroxyaceton 84.7 8.7 0.00019 28.3 7.3 72 34-114 6-89 (289)
421 PF02826 2-Hacid_dh_C: D-isome 84.6 1.5 3.2E-05 31.2 3.6 90 33-140 34-124 (178)
422 PRK10669 putative cation:proto 84.5 8.1 0.00018 33.0 8.5 92 36-142 418-514 (558)
423 cd08296 CAD_like Cinnamyl alco 84.3 18 0.00039 28.3 10.3 98 30-144 159-260 (333)
424 TIGR02440 FadJ fatty oxidation 84.2 6 0.00013 34.8 7.7 100 36-142 305-419 (699)
425 PRK09496 trkA potassium transp 84.2 3.2 7E-05 34.1 5.9 70 35-114 231-305 (453)
426 cd05293 LDH_1 A subgroup of L- 84.2 18 0.0004 28.3 10.2 103 34-142 2-119 (312)
427 PRK07806 short chain dehydroge 84.2 15 0.00032 27.2 10.3 104 35-143 6-134 (248)
428 PF01488 Shikimate_DH: Shikima 84.1 3 6.4E-05 28.1 4.8 78 32-119 9-88 (135)
429 PRK07109 short chain dehydroge 84.1 17 0.00037 28.7 9.7 77 35-116 8-95 (334)
430 TIGR02437 FadB fatty oxidation 84.0 7.5 0.00016 34.3 8.2 101 35-142 313-427 (714)
431 PRK11154 fadJ multifunctional 83.9 7.5 0.00016 34.3 8.2 100 35-142 309-424 (708)
432 PRK11064 wecC UDP-N-acetyl-D-m 83.6 13 0.00027 30.5 8.9 38 36-76 4-43 (415)
433 PRK06181 short chain dehydroge 83.6 9.8 0.00021 28.5 8.0 76 36-116 2-88 (263)
434 cd08233 butanediol_DH_like (2R 83.5 20 0.00043 28.3 10.9 101 28-145 166-274 (351)
435 PRK06522 2-dehydropantoate 2-r 83.4 18 0.00039 27.9 9.5 96 37-141 2-98 (304)
436 PRK08324 short chain dehydroge 83.0 14 0.00031 32.4 9.5 104 34-143 421-557 (681)
437 PRK12548 shikimate 5-dehydroge 82.8 15 0.00033 28.3 8.8 84 34-120 125-213 (289)
438 PF10237 N6-adenineMlase: Prob 82.8 14 0.0003 25.9 10.0 95 33-142 24-122 (162)
439 COG5379 BtaA S-adenosylmethion 82.7 3.5 7.7E-05 31.7 4.9 49 30-81 59-107 (414)
440 cd05283 CAD1 Cinnamyl alcohol 82.6 20 0.00044 28.1 9.6 97 31-144 166-264 (337)
441 PRK06035 3-hydroxyacyl-CoA deh 82.4 13 0.00028 28.7 8.3 96 36-139 4-117 (291)
442 cd05291 HicDH_like L-2-hydroxy 82.3 22 0.00047 27.8 9.6 77 37-117 2-79 (306)
443 PF03446 NAD_binding_2: NAD bi 82.1 4.7 0.0001 28.1 5.3 87 37-141 3-92 (163)
444 cd08286 FDH_like_ADH2 formalde 82.1 23 0.00049 27.9 9.8 100 31-143 163-266 (345)
445 KOG2811 Uncharacterized conser 81.8 3.8 8.1E-05 32.6 4.9 30 34-64 182-211 (420)
446 KOG1269 SAM-dependent methyltr 81.4 11 0.00023 30.4 7.5 111 35-147 181-317 (364)
447 PRK06701 short chain dehydroge 81.4 13 0.00029 28.5 8.0 104 35-143 46-181 (290)
448 PF01262 AlaDh_PNT_C: Alanine 81.1 0.3 6.6E-06 34.3 -1.0 43 34-78 19-62 (168)
449 COG0569 TrkA K+ transport syst 81.1 12 0.00026 27.7 7.3 67 37-113 2-73 (225)
450 PRK00066 ldh L-lactate dehydro 81.0 21 0.00046 28.0 9.0 105 34-143 5-122 (315)
451 cd08278 benzyl_alcohol_DH Benz 80.8 27 0.00058 27.9 10.2 98 30-144 182-286 (365)
452 PF00056 Ldh_1_N: lactate/mala 80.7 15 0.00033 24.9 10.4 101 37-142 2-117 (141)
453 TIGR01771 L-LDH-NAD L-lactate 80.7 14 0.00031 28.7 7.9 97 41-142 2-112 (299)
454 PRK07530 3-hydroxybutyryl-CoA 80.6 16 0.00035 28.1 8.3 96 36-140 5-116 (292)
455 PF11253 DUF3052: Protein of u 80.5 14 0.00031 24.5 8.6 80 105-221 44-124 (127)
456 PF06016 Reovirus_L2: Reovirus 80.5 2.1 4.6E-05 39.3 3.6 93 34-138 822-920 (1289)
457 cd05281 TDH Threonine dehydrog 79.8 25 0.00054 27.6 9.3 97 33-143 162-262 (341)
458 KOG0022 Alcohol dehydrogenase, 79.3 7.4 0.00016 30.5 5.7 104 28-147 186-298 (375)
459 PLN00112 malate dehydrogenase 79.2 33 0.00073 28.4 9.8 108 32-143 97-226 (444)
460 KOG1201 Hydroxysteroid 17-beta 79.0 20 0.00044 27.8 7.9 76 34-117 37-125 (300)
461 PLN00203 glutamyl-tRNA reducta 79.0 23 0.0005 30.0 9.0 105 34-148 265-372 (519)
462 PRK09496 trkA potassium transp 78.9 33 0.00072 28.3 10.0 91 37-141 2-97 (453)
463 cd08265 Zn_ADH3 Alcohol dehydr 78.8 28 0.0006 28.0 9.4 99 31-143 200-307 (384)
464 PRK06223 malate dehydrogenase; 78.5 29 0.00064 27.0 9.4 37 36-73 3-40 (307)
465 PRK06249 2-dehydropantoate 2-r 78.4 28 0.00061 27.2 9.0 99 35-142 5-105 (313)
466 COG1062 AdhC Zn-dependent alco 78.3 32 0.0007 27.4 12.5 109 26-150 177-292 (366)
467 COG5379 BtaA S-adenosylmethion 78.1 6.7 0.00015 30.3 5.1 74 63-144 290-367 (414)
468 cd08291 ETR_like_1 2-enoyl thi 77.9 31 0.00067 26.9 10.2 92 35-144 143-243 (324)
469 cd08279 Zn_ADH_class_III Class 77.8 33 0.00072 27.2 10.2 99 30-145 178-284 (363)
470 PF02086 MethyltransfD12: D12 77.8 4.3 9.3E-05 30.6 4.2 55 19-76 5-59 (260)
471 TIGR02441 fa_ox_alpha_mit fatt 77.7 11 0.00023 33.5 7.0 100 36-143 336-450 (737)
472 PTZ00117 malate dehydrogenase; 77.5 30 0.00066 27.2 8.9 38 34-72 4-42 (319)
473 PTZ00075 Adenosylhomocysteinas 77.2 7.1 0.00015 32.4 5.5 89 34-145 253-343 (476)
474 PLN02545 3-hydroxybutyryl-CoA 76.8 20 0.00043 27.7 7.7 97 35-140 4-116 (295)
475 PF02719 Polysacc_synt_2: Poly 76.6 7.7 0.00017 30.0 5.2 76 43-120 5-91 (293)
476 COG0275 Predicted S-adenosylme 76.5 2.3 5E-05 32.8 2.3 32 119-150 220-251 (314)
477 PRK15057 UDP-glucose 6-dehydro 76.5 11 0.00024 30.5 6.4 39 37-78 2-41 (388)
478 PRK12749 quinate/shikimate deh 76.3 34 0.00073 26.5 8.9 85 34-119 123-209 (288)
479 COG4017 Uncharacterized protei 76.3 11 0.00024 27.2 5.4 71 31-119 41-112 (254)
480 cd05279 Zn_ADH1 Liver alcohol 76.2 38 0.00082 27.0 9.9 101 30-144 179-286 (365)
481 COG0863 DNA modification methy 76.0 13 0.00028 28.6 6.6 49 31-82 219-267 (302)
482 cd08274 MDR9 Medium chain dehy 76.0 36 0.00078 26.7 10.1 96 29-143 172-273 (350)
483 COG1086 Predicted nucleoside-d 76.0 21 0.00046 30.4 7.8 84 34-120 249-339 (588)
484 TIGR00692 tdh L-threonine 3-de 75.7 37 0.0008 26.6 10.0 99 32-144 159-262 (340)
485 PLN02353 probable UDP-glucose 75.3 20 0.00043 30.0 7.6 42 36-78 2-45 (473)
486 PRK06172 short chain dehydroge 74.8 19 0.00041 26.8 7.0 77 35-116 7-94 (253)
487 PRK06182 short chain dehydroge 74.3 35 0.00076 25.8 9.5 72 35-117 3-85 (273)
488 cd08243 quinone_oxidoreductase 74.0 38 0.00082 26.0 10.1 96 31-143 139-238 (320)
489 TIGR00006 S-adenosyl-methyltra 74.0 2.2 4.7E-05 33.2 1.7 29 121-149 218-246 (305)
490 PRK06500 short chain dehydroge 73.7 34 0.00073 25.3 9.8 74 35-116 6-90 (249)
491 cd01065 NAD_bind_Shikimate_DH 73.7 21 0.00046 24.3 6.5 75 33-118 17-93 (155)
492 PRK06124 gluconate 5-dehydroge 73.6 22 0.00047 26.5 7.1 78 34-116 10-98 (256)
493 COG0373 HemA Glutamyl-tRNA red 73.5 43 0.00094 27.5 8.9 100 33-149 176-278 (414)
494 PRK08507 prephenate dehydrogen 73.2 18 0.00039 27.6 6.6 84 37-139 2-87 (275)
495 PRK12921 2-dehydropantoate 2-r 73.1 41 0.00088 26.0 9.8 96 37-141 2-100 (305)
496 PRK05225 ketol-acid reductoiso 72.9 4.5 9.7E-05 33.4 3.3 92 33-143 34-131 (487)
497 PF07101 DUF1363: Protein of u 72.9 3.6 7.8E-05 25.6 2.1 29 38-66 6-34 (124)
498 TIGR00507 aroE shikimate 5-deh 72.6 40 0.00087 25.7 10.5 101 33-146 115-217 (270)
499 PRK10556 hypothetical protein; 72.6 6.4 0.00014 24.6 3.2 26 188-213 3-28 (111)
500 PLN02256 arogenate dehydrogena 72.6 33 0.00072 26.8 7.9 94 25-138 26-122 (304)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-38 Score=231.12 Aligned_cols=215 Identities=40% Similarity=0.666 Sum_probs=190.7
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
+..||++|+++|++.++.|++.+.+.....++.+|||+|||||..+..+++..+ .++|+++|+|+.|++.++++....+
T Consensus 21 a~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~ 99 (238)
T COG2226 21 AKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG 99 (238)
T ss_pred HHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC
Confidence 368999999999999999999999998888999999999999999999999975 7799999999999999999986544
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhc-
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDN- 162 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~- 162 (222)
. .+++++++|++++|+++.+||+|.+.+.|+++++++.+|++++|+|||||++++.++..+..+.......++...
T Consensus 100 ~---~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~ 176 (238)
T COG2226 100 V---QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKY 176 (238)
T ss_pred c---cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHh
Confidence 3 349999999999999999999999999999999999999999999999999999999998887766655555545
Q ss_pred ccccccccCC-hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 163 VVVPVASGYG-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 163 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
..+....... ..+.|+++..+...+.+.+++..+++++||+.+......+|..++.++.|
T Consensus 177 v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 177 VLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 4444433333 56779999999999999999999999999999999999999999888876
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=100.00 E-value=3.8e-40 Score=241.61 Aligned_cols=216 Identities=40% Similarity=0.679 Sum_probs=105.3
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
.+.||.+|++++++.++.|++.+.+.....++.+|||+|||||..+..+++..++.++|+++|+|++|++.++++....+
T Consensus 17 a~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~ 96 (233)
T PF01209_consen 17 APRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG 96 (233)
T ss_dssp --------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT
T ss_pred HHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC
Confidence 36899999999999999999999998888889999999999999999999887777899999999999999999986544
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcc
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV 163 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~ 163 (222)
. .+++++++|++++|+++++||+|++.+.+++++|+.+.+++++++|||||++++.+++.+..+.......++....
T Consensus 97 ~---~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~i 173 (233)
T PF01209_consen 97 L---QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYI 173 (233)
T ss_dssp -----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----
T ss_pred C---CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccc
Confidence 3 4899999999999999999999999999999999999999999999999999999999999887777777777665
Q ss_pred cccccccCCh-hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 164 VVPVASGYGL-AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.+.....+.. ...|+++..++..+.+.+++.++++++||+.++...+.+|...+++|+|
T Consensus 174 lP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 174 LPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 5544443333 2468999999999999999999999999999999999999999999987
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=100.00 E-value=3.2e-35 Score=220.40 Aligned_cols=219 Identities=79% Similarity=1.303 Sum_probs=185.6
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
...||..++.++.+.++.|++.+.+.....++.+|||+|||+|..+..+++..++..+++++|+|++|++.++++.....
T Consensus 43 A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~ 122 (261)
T PLN02233 43 APVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA 122 (261)
T ss_pred hhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh
Confidence 35799999888899999998888888888888999999999999999988876566799999999999999987753211
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcc
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV 163 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~ 163 (222)
.....++.++++|+.++|+++++||+|++++++++++++..++++++++|||||++++.++..++.+.......++....
T Consensus 123 ~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~ 202 (261)
T PLN02233 123 KSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNV 202 (261)
T ss_pred hccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhh
Confidence 11225899999999999988889999999999999999999999999999999999999999888777666666666555
Q ss_pred cccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 164 VVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
..+....++..+.|.++..+...+++++++.++++++||++++.....++...+++|+|
T Consensus 203 ~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 203 VVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred hhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence 44544444555668888888889999999999999999999999999999999999875
No 4
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=201.41 Aligned_cols=218 Identities=38% Similarity=0.565 Sum_probs=184.9
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCC-----CcEEEEeCChhHHHHHhcc
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ-----GKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-----~~~~~~D~~~~~~~~~~~~ 78 (222)
+..||.+|+.++.+.|+.|...++..+...++.++||++||||..+..+.+..+.. .+|++.|++|+|++.++++
T Consensus 70 A~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 70 AKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 35699999999999999999999999999999999999999999999999987543 6899999999999999999
Q ss_pred hhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCC-chhhHHHH
Q 027517 79 QDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ-PFTTAIQE 157 (222)
Q Consensus 79 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~-~~~~~~~~ 157 (222)
....+.....++.++++|++++|+++.+||..++.+.+.+++++.+.+++.+|+|||||++...++...++ +.......
T Consensus 150 a~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 150 AKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred HhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 86654443345999999999999999999999999999999999999999999999999999999998775 44455555
Q ss_pred HHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEE-EeeecCCeeeeEeee
Q 027517 158 WMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK-HYELSGGLMGNLVAT 221 (222)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~-~~~~~~~~~~~~~~~ 221 (222)
+..+.....-....+....|+++..++.++.+.+++..+.+++||..+. ......|..+++.+-
T Consensus 230 ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ye~lt~Gv~aIH~gi 294 (296)
T KOG1540|consen 230 YSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYENLTFGVVAIHSGI 294 (296)
T ss_pred hhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccccccccceeeeeeeehhc
Confidence 5555543333334566677999999999999999999999999999997 666666666655543
No 5
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=100.00 E-value=9e-31 Score=194.26 Aligned_cols=216 Identities=32% Similarity=0.605 Sum_probs=173.4
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
...||.++...++..+..|+..++..+...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++.....
T Consensus 15 a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 94 (231)
T TIGR02752 15 YKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG 94 (231)
T ss_pred hhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 46789999999999999999888888888888999999999999999999887667799999999999999998875432
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcc
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV 163 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~ 163 (222)
. ++++++++|+.+.++++++||+|++.++++++++...+++++.++|+|||.+++.+...+..+.......++....
T Consensus 95 ~---~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 171 (231)
T TIGR02752 95 L---HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYI 171 (231)
T ss_pred C---CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcCh
Confidence 2 5789999999888777788999999999999999999999999999999999998877665544333333322222
Q ss_pred cccccccCC-hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 164 VVPVASGYG-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.+.....+. ....+.+.......+++.+++.++++++||+++++..+..|....++++|
T Consensus 172 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 172 MPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred hHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 111111111 11234445556678899999999999999999999999999999999987
No 6
>PRK05785 hypothetical protein; Provisional
Probab=99.97 E-value=3.9e-29 Score=183.59 Aligned_cols=203 Identities=21% Similarity=0.273 Sum_probs=166.4
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
.+.||..++.++++.+..|++.++..+.. .++.+|||+|||||..+..+++.. +.+++|+|+|++|++.++++.
T Consensus 19 A~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~-- 94 (226)
T PRK05785 19 PKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD-- 94 (226)
T ss_pred hHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--
Confidence 36799999999999998898877765532 346799999999999999998874 469999999999999987642
Q ss_pred hhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhh
Q 027517 82 VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMID 161 (222)
Q Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~ 161 (222)
..+++|++++|+++++||+|++++++++++++.+++++++++|||. +.+.++..++......+..++..
T Consensus 95 ---------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~ 163 (226)
T PRK05785 95 ---------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLR 163 (226)
T ss_pred ---------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHH
Confidence 3467899999998899999999999999999999999999999993 44566666666666666666665
Q ss_pred cccccccccCCh-hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 162 NVVVPVASGYGL-AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
...+.....+.. ...|.++..++..+.+++++.++++++| ..++.....+|..++++++|
T Consensus 164 ~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 164 YIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 555444444333 4569999999999999999999999984 77899999999999999987
No 7
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.95 E-value=3.9e-26 Score=170.36 Aligned_cols=216 Identities=41% Similarity=0.732 Sum_probs=161.4
Q ss_pred hHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh
Q 027517 5 SLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84 (222)
Q Consensus 5 ~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (222)
..|+.++.....+....+...++..+...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++......
T Consensus 22 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 101 (239)
T PRK00216 22 PKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL 101 (239)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc
Confidence 55666665555666777777777777667788999999999999999998863357999999999999999988754221
Q ss_pred hcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccc
Q 027517 85 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVV 164 (222)
Q Consensus 85 ~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (222)
..++.+...|+.+.+.+.++||+|++.+++++.++...+++++.+.|+|||.+++.+...+..........++.....
T Consensus 102 --~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~ 179 (239)
T PRK00216 102 --SGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVL 179 (239)
T ss_pred --ccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhh
Confidence 147889999998877666789999999999999999999999999999999999988776544322222222221111
Q ss_pred ccccccCCh-hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 165 VPVASGYGL-AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
......+.. ...+..........++.+++.++++++||+++.+..+.++.+.+++|+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 180 PLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 111111111 1123334445566789999999999999999999999999999999986
No 8
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.95 E-value=1.1e-25 Score=166.29 Aligned_cols=213 Identities=40% Similarity=0.684 Sum_probs=163.7
Q ss_pred hHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh
Q 027517 5 SLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK 84 (222)
Q Consensus 5 ~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (222)
..||..+..+.......|...+...+...++.+|||+|||+|..+..+++..+...+++++|+++.+++.++++.. .
T Consensus 10 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-- 86 (223)
T TIGR01934 10 PKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-- 86 (223)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c--
Confidence 4677777777777777888888887777788899999999999999999886333689999999999999988764 1
Q ss_pred hcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccc
Q 027517 85 ACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVV 164 (222)
Q Consensus 85 ~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (222)
..++.+..+|+.+.+++.++||+|++++++++.+++..+++++.+.|+|||++++.+...+..........++.....
T Consensus 87 --~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (223)
T TIGR01934 87 --PLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVL 164 (223)
T ss_pred --CCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhh
Confidence 147899999998877666789999999999999999999999999999999999988776544333333333332222
Q ss_pred ccccccCC-hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 165 VPVASGYG-LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 165 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
......+. ....+.+.......+++.++|..+++++||+++.+.+..++....++++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 165 PSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 22111111 11223344445566789999999999999999999999999888888876
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.92 E-value=2.6e-23 Score=161.67 Aligned_cols=172 Identities=24% Similarity=0.337 Sum_probs=127.6
Q ss_pred HHHHHhhCC-----CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 24 RMAVSWSGA-----KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 24 ~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
..+++.... .++.+|||+|||+|..+..+++.+ +.+|+|+|+|+.+++.++++....+.. +++.+.++|+.
T Consensus 103 ~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~--~~v~~~~~D~~ 178 (340)
T PLN02244 103 EESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLS--DKVSFQVADAL 178 (340)
T ss_pred HHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEcCcc
Confidence 334555554 567899999999999999999875 569999999999999998876543321 47999999999
Q ss_pred CcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchh-hHHHHHHhhcccccccccCChhHHH
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVVVPVASGYGLAEEY 177 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (222)
++++++++||+|++..+++|+++...+++++.++|||||.+++.++........ ........ ...
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~--------------~~~ 244 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQ--------------KLL 244 (340)
T ss_pred cCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHH--------------HHH
Confidence 988888899999999999999999999999999999999999988654321110 00000000 000
Q ss_pred HHhHH--hHhhcCCHHHHHHHHHHcCCeEEEEeeecCC
Q 027517 178 QYLKS--SIREFLTGKDLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 178 ~~~~~--~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
..+.. ....+.+.+++.++++++||+.++..++...
T Consensus 245 ~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 245 DKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred HHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 00000 0112458999999999999999998877643
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.92 E-value=3e-23 Score=155.89 Aligned_cols=180 Identities=21% Similarity=0.186 Sum_probs=126.2
Q ss_pred CchhhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh
Q 027517 1 MLCFSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 80 (222)
Q Consensus 1 ~~~~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (222)
|-+.+.|+..++...... ..+++.+...++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.++++
T Consensus 1 ~w~~~~y~~~~~~~~~~~-----~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-- 72 (255)
T PRK14103 1 MWDPDVYLAFADHRGRPF-----YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-- 72 (255)
T ss_pred CCCHHHHHHHHhHhhCHH-----HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--
Confidence 456778877765543221 334566666778899999999999999999885 667999999999999998653
Q ss_pred hhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHh
Q 027517 81 LVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMI 160 (222)
Q Consensus 81 ~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~ 160 (222)
++.+.++|+.+++ +.++||+|+++.++||++++..++++++++|||||.+++..+.....+..........
T Consensus 73 --------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 143 (255)
T PRK14103 73 --------GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALAR 143 (255)
T ss_pred --------CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhc
Confidence 5788899988764 4568999999999999999999999999999999999887544322222111111110
Q ss_pred hcccccccccCChhHHHHHh-HHhHhhcCCHHHHHHHHHHcCCeEEE
Q 027517 161 DNVVVPVASGYGLAEEYQYL-KSSIREFLTGKDLEKLALEIGFSRAK 206 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~ 206 (222)
.. .+.. ..... ........+++++.++|+++||++..
T Consensus 144 ~~---~w~~------~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 144 RE---PWAK------LLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred cC---chhH------HhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 00 0000 00000 00012356899999999999998544
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.91 E-value=1.4e-23 Score=160.51 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=120.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
++.+|||||||+|.++..+++. +.+|+|+|+++++++.++++...... ..++.++++|++++++.+++||+|++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPV--TSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCc--ccceeEEecCHHHhhhccCCCCEEEEh
Confidence 4669999999999999988753 56999999999999999977532211 147899999998887766789999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHH-HHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE-WMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
.+++|++++..+++++.++|||||.+++.+++.....+...... .+....... . .+.+..++++++
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~-g------------th~~~~f~tp~e 272 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPK-G------------THQWSSFVTPEE 272 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCC-C------------CcCccCCCCHHH
Confidence 99999999999999999999999999999877543211111100 000000000 0 012235789999
Q ss_pred HHHHHHHcCCeEEEEeeecC
Q 027517 193 LEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~~ 212 (222)
+..+++++||++++...+..
T Consensus 273 L~~lL~~aGf~i~~~~G~~~ 292 (322)
T PLN02396 273 LSMILQRASVDVKEMAGFVY 292 (322)
T ss_pred HHHHHHHcCCeEEEEeeeEE
Confidence 99999999999998765543
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.91 E-value=8e-23 Score=153.65 Aligned_cols=161 Identities=19% Similarity=0.278 Sum_probs=126.4
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+...++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++... ..++.+.+.|+.+.+++
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKDFP 114 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCCCC
Confidence 456666778889999999999999999888763 56999999999999999987643 15799999999888887
Q ss_pred CCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchh-hHHHHHHhhcccccccccCChhHHHHHh
Q 027517 104 DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVVVPVASGYGLAEEYQYL 180 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (222)
+++||+|++..+++|++ ++..++++++++|||||.+++.++........ .....+..
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~-------------------- 174 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIK-------------------- 174 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHH--------------------
Confidence 78999999999888885 78899999999999999999998765432111 11111110
Q ss_pred HHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 181 KSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.....+.+..++.++|+++||++++..+...
T Consensus 175 -~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 175 -KRKYTLIPIQEYGDLIKSCNFQNVVAKDISD 205 (263)
T ss_pred -hcCCCCCCHHHHHHHHHHCCCCeeeEEeCcH
Confidence 0112356889999999999999999876543
No 13
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.91 E-value=1.8e-23 Score=145.93 Aligned_cols=160 Identities=68% Similarity=1.145 Sum_probs=130.5
Q ss_pred EEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 63 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 63 ~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|+|+|++|++.|+++..........+++++++|+.++++++++||+|++.+++++++++..++++++++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998765432211224799999999999988889999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 143 DFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
++..+..........|+......+..........|.++..+...+.+++++.++|+++||+.+.......|..+++++-|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 160 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAMR 160 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEeeC
Confidence 99987766665565665544444443333445668888888889999999999999999999999999999888887754
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.91 E-value=2.3e-23 Score=155.52 Aligned_cols=182 Identities=17% Similarity=0.260 Sum_probs=126.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.++.+|||+|||+|..+..+++.+ .++.+++++|+|+.|++.++++....+.. .++.+.++|+.+.+++ .+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~--~~v~~~~~d~~~~~~~--~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP--TPVDVIEGDIRDIAIE--NASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEeCChhhCCCC--CCCEEe
Confidence 467899999999999998888743 36779999999999999999987653321 4799999999887654 489999
Q ss_pred EcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhH-HHHHHhhcccccccccCChhHHHHH--hHHhHhh
Q 027517 112 MGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTA-IQEWMIDNVVVPVASGYGLAEEYQY--LKSSIRE 186 (222)
Q Consensus 112 ~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 186 (222)
++.++|++++ ...+++++++.|||||.+++.+........... ....+.. .....++...+..+. ...+...
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~---~~~~~g~s~~ei~~~~~~~~~~~~ 207 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHD---FKRANGYSELEISQKRSMLENVML 207 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHhhcc
Confidence 9999999853 468999999999999999999866544332211 1111110 011122222111111 1122344
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
..|.++..++|+++||+.++.. +....+..++|+|
T Consensus 208 ~~~~~~~~~~L~~aGF~~v~~~-~~~~~f~~~~a~k 242 (247)
T PRK15451 208 TDSVETHKARLHKAGFEHSELW-FQCFNFGSLVALK 242 (247)
T ss_pred cCCHHHHHHHHHHcCchhHHHH-HHHHhHHHHhhee
Confidence 5799999999999999987654 3344455555544
No 15
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.90 E-value=1.5e-23 Score=149.76 Aligned_cols=161 Identities=25% Similarity=0.303 Sum_probs=125.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
++.+|||+|||.|.++..+++. +.+|+|+|+++++++.|+.+....+ -++++.+..++++....++||+|+|.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhcCCCccEEEEh
Confidence 6889999999999999999976 5799999999999999998875543 35678888888876655899999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHH
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 193 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (222)
.+++|++++..+++.+.+.+||||.++++++++....+...+..-..---+.+.. .+....+..++|+
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~g------------TH~~~k~irp~El 199 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKG------------THDYRKFIKPAEL 199 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCc------------chhHHHhcCHHHH
Confidence 9999999999999999999999999999998865443332221111000011111 1234567789999
Q ss_pred HHHHHHcCCeEEEEeeecCC
Q 027517 194 EKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 194 ~~~l~~~Gf~~~~~~~~~~~ 213 (222)
...+.++|+.+.....+...
T Consensus 200 ~~~~~~~~~~~~~~~g~~y~ 219 (243)
T COG2227 200 IRWLLGANLKIIDRKGLTYN 219 (243)
T ss_pred HHhcccCCceEEeecceEec
Confidence 99999999999887766554
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.90 E-value=5.8e-22 Score=161.44 Aligned_cols=162 Identities=23% Similarity=0.350 Sum_probs=126.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++.+...++.+|||+|||+|..+..+++.. +.+++|+|+|+.+++.++++..... .++.+.++|+...+++
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~----~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK----CSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC----CceEEEEcCcccCCCC
Confidence 345555566778899999999999999988874 5689999999999999987754222 4789999999888777
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||+|++..+++|++++..++++++++|||||.+++.++.............+.. ..
T Consensus 330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---------------------~~ 388 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIK---------------------QR 388 (475)
T ss_pred CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHH---------------------hc
Confidence 778999999999999999999999999999999999999876543222111111111 11
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.....+.+++.++++++||+++.......
T Consensus 389 g~~~~~~~~~~~~l~~aGF~~i~~~d~~~ 417 (475)
T PLN02336 389 GYDLHDVQAYGQMLKDAGFDDVIAEDRTD 417 (475)
T ss_pred CCCCCCHHHHHHHHHHCCCeeeeeecchH
Confidence 12356889999999999999997765443
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.89 E-value=1.4e-22 Score=142.22 Aligned_cols=153 Identities=28% Similarity=0.432 Sum_probs=111.0
Q ss_pred hHHHHHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 20 RIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+.+...+..+.. ..++.+|||+|||+|.++..+.+. +.+++++|+++.+++. . ++.....+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~---~----------~~~~~~~~~~ 70 (161)
T PF13489_consen 7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK---R----------NVVFDNFDAQ 70 (161)
T ss_dssp HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH---T----------TSEEEEEECH
T ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh---h----------hhhhhhhhhh
Confidence 334444444443 567889999999999999999655 4499999999999988 1 2333333333
Q ss_pred CcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHH
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 178 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (222)
....++++||+|+++.+++|++++..+++++.++|||||.+++.++.... ........|.. .
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~-----------------~ 132 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD-PSPRSFLKWRY-----------------D 132 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS-HHHHHHHHCCG-----------------T
T ss_pred hhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc-hhhhHHHhcCC-----------------c
Confidence 44445678999999999999999999999999999999999999887643 11111111110 0
Q ss_pred HhHHhHhhcCCHHHHHHHHHHcCCeEEE
Q 027517 179 YLKSSIREFLTGKDLEKLALEIGFSRAK 206 (222)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 206 (222)
.....+..+++.+++..+++++||++++
T Consensus 133 ~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 133 RPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp CHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred CccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 0011234688999999999999999986
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.89 E-value=2.6e-22 Score=150.76 Aligned_cols=163 Identities=19% Similarity=0.194 Sum_probs=117.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~ 111 (222)
.++.+|||+|||+|..+..+++. +.+|+++|+|+++++.++++....+.. .++.++++|+.+++ .+.++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~--~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVS--DNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCc--cceEEEEcCHHHHhhhcCCCCCEEE
Confidence 45679999999999999999875 468999999999999999887544321 57899999988763 4457899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHh--hcccccccccCChhHHHHHhHHhHhhcCC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMI--DNVVVPVASGYGLAEEYQYLKSSIREFLT 189 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (222)
+..+++|++++..+++++.++|||||.+++..++.........+..... ....... .. . .......++
T Consensus 118 ~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~------~---~~~p~~~~~ 187 (255)
T PRK11036 118 FHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKR-KK------R---TLSPDYPLD 187 (255)
T ss_pred ehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccc-cc------c---CCCCCCCCC
Confidence 9999999999999999999999999999988766532211111100000 0000000 00 0 000123578
Q ss_pred HHHHHHHHHHcCCeEEEEeee
Q 027517 190 GKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 190 ~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
++++.++++++||+++.....
T Consensus 188 ~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 188 PEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHHHCCCeEeeeeeE
Confidence 999999999999999876543
No 19
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.89 E-value=9.9e-22 Score=150.85 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=122.4
Q ss_pred HHHHHHHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 21 IWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
.++..+++.... .++.+|||+|||+|..+..+++.. +..+++++|+++++++.++++... .+++++.+|+.+
T Consensus 99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~ 171 (340)
T PLN02490 99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAED 171 (340)
T ss_pred HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHh
Confidence 344444443333 457799999999999999988875 446899999999999999987531 478899999998
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++++++||+|+++.+++++++...+++++.++|+|||.+++.+...+..... +...
T Consensus 172 lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~----r~~~------------------- 228 (340)
T PLN02490 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLS----RFFA------------------- 228 (340)
T ss_pred CCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHH----HHhh-------------------
Confidence 88877889999999999999999999999999999999998876543221110 0000
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
..+..+.+.+++.++++++||+.++..+...
T Consensus 229 --~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 229 --DVWMLFPKEEEYIEWFTKAGFKDVKLKRIGP 259 (340)
T ss_pred --hhhccCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence 0111245789999999999999998877544
No 20
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.89 E-value=9e-23 Score=151.96 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=126.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.++.+|||+|||+|..+..+++.+. ++.+++++|+|+.+++.++++....... .++.++++|+.+++++ ++|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE--IPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEECChhhCCCC--CCCEEe
Confidence 4677999999999999999988652 5779999999999999999887543221 4789999999987654 489999
Q ss_pred EcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchh-hHHHHHHhhcccccccccCChhHHHHH--hHHhHhh
Q 027517 112 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMIDNVVVPVASGYGLAEEYQY--LKSSIRE 186 (222)
Q Consensus 112 ~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 186 (222)
+.+++|+++ +...++++++++|+|||.+++.+......... ......+... . ...++...+.... ...+...
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~--~-~~~g~~~~~~~~~~~~~~~~~~ 204 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQF--K-RANGYSELEISQKRTALENVMR 204 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHH--H-HHcCCCHHHHHHHHHHHhccCC
Confidence 999999985 45789999999999999999998765443321 1111111000 0 0011111111111 1112345
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
.+|.+++.++++++||+.++... ..+.+..++|+|
T Consensus 205 ~~s~~~~~~~l~~aGF~~~~~~~-~~~~~~~~~~~~ 239 (239)
T TIGR00740 205 TDSIETHKARLKNVGFSHVELWF-QCFNFGSLVAVK 239 (239)
T ss_pred CCCHHHHHHHHHHcCCchHHHHH-HHHhHhHHheeC
Confidence 78999999999999999776442 234556666654
No 21
>PRK08317 hypothetical protein; Provisional
Probab=99.89 E-value=2.9e-21 Score=144.21 Aligned_cols=168 Identities=32% Similarity=0.510 Sum_probs=125.9
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.++..+.+.+...++.+|||+|||+|.++..+++.+++..+++++|+++.+++.++++..... .++.+...|+...
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~ 81 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG----PNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC----CceEEEecccccC
Confidence 345566777788888999999999999999999886566799999999999999988732221 5789999999887
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCch----hhHHHHHHhhcccccccccCChhHH
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPF----TTAIQEWMIDNVVVPVASGYGLAEE 176 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (222)
++++++||+|++..++++++++..+++++.++|+|||.+++.++....... ........
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~----------------- 144 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKIL----------------- 144 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHH-----------------
Confidence 777788999999999999999999999999999999999988754321111 00111110
Q ss_pred HHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 177 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
...........+..++.++++++||+.+.....
T Consensus 145 -~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 145 -NFWSDHFADPWLGRRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred -HHHHhcCCCCcHHHHHHHHHHHcCCCceeEEEE
Confidence 001111122345678999999999998765544
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.88 E-value=1.5e-21 Score=135.52 Aligned_cols=109 Identities=34% Similarity=0.572 Sum_probs=96.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v 110 (222)
.++.+|||+|||+|..+..+++...++.+++|+|+++++++.++++....+. ++++++++|+.+++ ++ ++||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIEDLPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTCGCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhccccccC-CCeeEE
Confidence 3567999999999999999996656778999999999999999998765543 48999999999976 44 789999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++..+++++.++..+++++.+.|+++|.+++.+..
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999999998777
No 23
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.88 E-value=3.4e-21 Score=146.26 Aligned_cols=157 Identities=28% Similarity=0.402 Sum_probs=121.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++....+. .++.+..+|+.++++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~---~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY---TNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC---CCEEEEEcchhhCCCCCCceeEE
Confidence 456788999999999998888887766666899999999999999988654432 57899999999888777789999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
+++.++++.++...+++++.++|||||++++.++....... ...... ...........++.
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~-~~~~~~------------------~~~~~~~~~~~~~~ 211 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELP-EEIRND------------------AELYAGCVAGALQE 211 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCC-HHHHHh------------------HHHHhccccCCCCH
Confidence 99999999999999999999999999999998876533211 111100 00011111234678
Q ss_pred HHHHHHHHHcCCeEEEEee
Q 027517 191 KDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~~ 209 (222)
+++.++++++||..+++..
T Consensus 212 ~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 212 EEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred HHHHHHHHHCCCCceEEEe
Confidence 8999999999999877643
No 24
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.88 E-value=8.2e-21 Score=142.54 Aligned_cols=155 Identities=22% Similarity=0.332 Sum_probs=118.1
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+.....+++.+...++.+|||+|||+|..+..+.+. +.+++++|+|+.+++.++++. ....++++|++.
T Consensus 28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~ 96 (251)
T PRK10258 28 RQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKD--------AADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC--------CCCCEEEcCccc
Confidence 344455666666556789999999999999888754 468999999999999998874 245678899998
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++++++||+|+++.++++.+++..++.++.++|+|||.+++..+.....+... ..|..-.
T Consensus 97 ~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~--~~~~~~~----------------- 157 (251)
T PRK10258 97 LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELH--QAWQAVD----------------- 157 (251)
T ss_pred CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHH--HHHHHhc-----------------
Confidence 888778899999999999999999999999999999999999887754422111 1111100
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeE
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSR 204 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~ 204 (222)
......++++.+++..++++.|++.
T Consensus 158 ~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 158 ERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred cCCccccCCCHHHHHHHHHhCCcee
Confidence 0012235678899999999888764
No 25
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.87 E-value=4.3e-22 Score=143.31 Aligned_cols=157 Identities=24% Similarity=0.352 Sum_probs=117.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCC----CeeEEeCCCCCcCCCCCceeEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYK----NIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~D~v 110 (222)
+.+|||+|||+|-++.+|++. +..|+|+|.++++++.|+++....+. ... ++++.+.|++.+ .++||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~-~~~~~~y~l~~~~~~~E~~---~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPV-LEGAIAYRLEYEDTDVEGL---TGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCch-hccccceeeehhhcchhhc---cccccee
Confidence 478999999999999999987 57999999999999999999544332 222 356666676665 3459999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcc--cccccccCChhHHHHHhHHhHhhcC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNV--VVPVASGYGLAEEYQYLKSSIREFL 188 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (222)
+|..+++|+.++..+++.+.+.|||||.+++.+..+.-..+...+ ++.+.. ++|... +.+..+.
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i--~~~E~vl~ivp~Gt------------h~~ekfi 228 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTI--FLAEIVLRIVPKGT------------HTWEKFI 228 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc--cHHHHHHHhcCCCC------------cCHHHcC
Confidence 999999999999999999999999999999998886543222111 111111 111111 2345678
Q ss_pred CHHHHHHHHHHcCCeEEEEeeecC
Q 027517 189 TGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 189 ~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
++.++..+++.+|+.+..+....+
T Consensus 229 ~p~e~~~~l~~~~~~v~~v~G~~y 252 (282)
T KOG1270|consen 229 NPEELTSILNANGAQVNDVVGEVY 252 (282)
T ss_pred CHHHHHHHHHhcCcchhhhhcccc
Confidence 999999999999999877655443
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.87 E-value=1.5e-20 Score=141.72 Aligned_cols=128 Identities=24% Similarity=0.282 Sum_probs=104.3
Q ss_pred hhhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh
Q 027517 3 CFSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82 (222)
Q Consensus 3 ~~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (222)
|.+.|+.+... .....+.++..+...++.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++.
T Consensus 5 ~~~~Y~~~~~~-----~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~--- 75 (258)
T PRK01683 5 NPSLYLKFEDE-----RTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL--- 75 (258)
T ss_pred CHHHHHHHHHH-----hhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC---
Confidence 45778775532 22334455666666778899999999999999999885 5679999999999999998875
Q ss_pred hhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 83 SKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 83 ~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+++.+..+|+.+.. +..+||+|+++.+++++++...+++++.++|+|||.+++..+.
T Consensus 76 -----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 76 -----PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred -----CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 47889999987754 3458999999999999999999999999999999999886433
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.87 E-value=6.3e-21 Score=146.93 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=116.2
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+...+...++.+|||+|||+|.++..+++. ++ ..|+|+|+|+.++..++........ ..++.+..+|+++++. .+
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~--~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGN--DQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEeCCHHHCCC-cC
Confidence 344555456789999999999999999887 33 3699999999988765432211111 1479999999998887 67
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
+||+|+|..+++|..++..+++++++.|+|||.+++.++............. ..|..+. ...
T Consensus 189 ~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~-----------------~~y~~~~-~~~ 250 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG-----------------DRYAKMR-NVY 250 (322)
T ss_pred CcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch-----------------hHHhcCc-cce
Confidence 8999999999999999999999999999999999887654322111100000 0010000 001
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
...|.+++.++|+++||+++++....
T Consensus 251 ~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 251 FIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred eCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 23588999999999999999877554
No 28
>PRK06202 hypothetical protein; Provisional
Probab=99.87 E-value=1.9e-20 Score=138.91 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=126.4
Q ss_pred hHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHh---CCCCcEEEEeCChhHHHHHhcchhh
Q 027517 5 SLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 5 ~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
..|+..|.... +....+...+...+...++.+|||+|||+|..+..+++.. +++.+++++|+++++++.++++...
T Consensus 32 ~~~~~~n~~~~-~~~~~~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 110 (232)
T PRK06202 32 AGFRRVNRIVA-GWRGLYRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR 110 (232)
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc
Confidence 44555555544 3345555554444444567799999999999998887643 2345899999999999999887532
Q ss_pred hhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHH
Q 027517 82 VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWM 159 (222)
Q Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~ 159 (222)
.++.+...+...++.++++||+|++++++||+++. ..+++++.++++ |.+++.++..+...+........
T Consensus 111 ------~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~ 182 (232)
T PRK06202 111 ------PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTR 182 (232)
T ss_pred ------CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHH
Confidence 35666666666665556789999999999999774 579999999998 67777777765322211111100
Q ss_pred hhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 160 IDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
....+.+.. .....++.+.++++++.+++++ ||++...+.+..
T Consensus 183 -----~~~~~~~~~----~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~~~ 225 (232)
T PRK06202 183 -----LLSRSSFVH----TDGLLSVRRSYTPAELAALAPQ-GWRVERQWPFRY 225 (232)
T ss_pred -----HhccCceee----ccchHHHHhhcCHHHHHHHhhC-CCeEEeccceee
Confidence 000000000 0012355678999999999999 999887765543
No 29
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.86 E-value=2.8e-20 Score=141.82 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=113.2
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
+..+...++++|||+|||+|.++..++.. ++ ..|+|+|+|+.++..++........ ..++.+...++.+++.. .+
T Consensus 114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~--~~~v~~~~~~ie~lp~~-~~ 188 (314)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDN--DKRAILEPLGIEQLHEL-YA 188 (314)
T ss_pred HHhcCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhcc--CCCeEEEECCHHHCCCC-CC
Confidence 33445566789999999999999888866 22 3799999999998765432111111 14678888888887654 47
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhh
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 186 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (222)
||+|++..+++|.+++..+++++++.|+|||.+++.+.............. ..|..+. ....
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-----------------~ry~k~~-nv~f 250 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-----------------DRYAKMK-NVYF 250 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-----------------HHHHhcc-cccc
Confidence 999999999999999999999999999999999987654322110000000 0010000 1112
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.++..++.++++++||+.+++....
T Consensus 251 lpS~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 251 IPSVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred CCCHHHHHHHHHHCCCeEEEEEecc
Confidence 4588999999999999999876543
No 30
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.86 E-value=1.1e-20 Score=141.83 Aligned_cols=164 Identities=23% Similarity=0.300 Sum_probs=114.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+.+.+...|+.+|||||||.|.++..+++.+ +++|+|+.+|+++.+.++++....+.. .++++...|..+++.
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~--~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLE--DRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS--STEEEEES-GGG----
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEeeccccCC-
Confidence 355666788999999999999999999999996 679999999999999999998766543 678999999887643
Q ss_pred CCceeEEEEcccccCc--ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHH---HHHHhhcccccccccCChhHHHH
Q 027517 104 DCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI---QEWMIDNVVVPVASGYGLAEEYQ 178 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 178 (222)
+||.|++..+++|+ .+....++++.++|+|||.+++..+........... ..|+.....
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiF-------------- 190 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIF-------------- 190 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTS--------------
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeC--------------
Confidence 89999999999999 467899999999999999999887776543322110 022221111
Q ss_pred HhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 179 YLKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
+ ...+.+..++...++++||++........
T Consensus 191 --P--gg~lps~~~~~~~~~~~~l~v~~~~~~~~ 220 (273)
T PF02353_consen 191 --P--GGYLPSLSEILRAAEDAGLEVEDVENLGR 220 (273)
T ss_dssp --T--TS---BHHHHHHHHHHTT-EEEEEEE-HH
T ss_pred --C--CCCCCCHHHHHHHHhcCCEEEEEEEEcCc
Confidence 0 11345788999999999999998876543
No 31
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=2e-20 Score=138.44 Aligned_cols=163 Identities=24% Similarity=0.315 Sum_probs=129.7
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
+.+.+.++..||.+|||||||.|.++.++++.+ +++|+|+++|+++.+.+++++...+.. .+++++..|..++.
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~--~~v~v~l~d~rd~~-- 135 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLE--DNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCC--cccEEEeccccccc--
Confidence 456677889999999999999999999999996 679999999999999999988766543 58999999988874
Q ss_pred CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 104 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
++||.|++...++|+.. .+..++.++++|+|||.+++..+..+..+.. ....|+.....+.
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~~i~~yiFPg--------------- 198 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPDFIDKYIFPG--------------- 198 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-cchHHHHHhCCCC---------------
Confidence 44999999999999954 8999999999999999999998887765442 2222222111111
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
..+.+..++....+++||.+.....+..
T Consensus 199 ---G~lPs~~~i~~~~~~~~~~v~~~~~~~~ 226 (283)
T COG2230 199 ---GELPSISEILELASEAGFVVLDVESLRP 226 (283)
T ss_pred ---CcCCCHHHHHHHHHhcCcEEehHhhhcH
Confidence 1345778888889999999887665544
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.86 E-value=1.3e-20 Score=136.04 Aligned_cols=147 Identities=17% Similarity=0.125 Sum_probs=109.5
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+.+.+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+. .++.+.+.|+.+.+++ +
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL---DNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC---CcceEEecChhhCCcC-C
Confidence 444555556789999999999999999975 56999999999999999987654332 4688888998876654 5
Q ss_pred ceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 106 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+||+|+++.++|+++ +...+++++.++|+|||.+++............ . .
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~---------------~-------------~ 146 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT---------------V-------------G 146 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC---------------C-------------C
Confidence 799999999998875 568899999999999999766543332211000 0 0
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEee
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
....++..++.+.++ ||+++...+
T Consensus 147 ~~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 147 FPFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred CCCccCHHHHHHHhC--CCeEEEeeC
Confidence 012467889988886 899887643
No 33
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.85 E-value=1.9e-20 Score=138.31 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=116.2
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
++|||+|||+|..+..+++.+ ++.+++++|+|+++++.++++....+.. .++.+...|....+.+ ++||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~--~~i~~~~~d~~~~~~~-~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ--GRIRIFYRDSAKDPFP-DTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC--cceEEEecccccCCCC-CCCCEeehHHH
Confidence 379999999999999999885 5578999999999999999887543322 5789999998765554 57999999999
Q ss_pred ccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHH
Q 027517 116 LRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEK 195 (222)
Q Consensus 116 l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (222)
++|+++...++++++++|+|||.+++.++...... ... .. .......+..+|.+
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~------------~~-----------~~~~~~~s~~~~~~ 130 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLS---AIE------------HE-----------ETTSYLVTREEWAE 130 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCc---ccc------------cc-----------ccccccCCHHHHHH
Confidence 99999999999999999999999999876532100 000 00 00012568899999
Q ss_pred HHHHcCCeEEEEeeecCC
Q 027517 196 LALEIGFSRAKHYELSGG 213 (222)
Q Consensus 196 ~l~~~Gf~~~~~~~~~~~ 213 (222)
+++++||++++......+
T Consensus 131 ~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 131 LLARNNLRVVEGVDASLE 148 (224)
T ss_pred HHHHCCCeEEEeEECcHh
Confidence 999999999988776554
No 34
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.85 E-value=6.7e-21 Score=121.82 Aligned_cols=95 Identities=37% Similarity=0.642 Sum_probs=83.5
Q ss_pred EEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccC
Q 027517 39 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRN 118 (222)
Q Consensus 39 LdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 118 (222)
||+|||+|..+..+++. +..+++++|+++++++.++++... .++.+...|..++++++++||+|++..+++|
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceee
Confidence 89999999999999987 467999999999999999998743 3566999999999999999999999999999
Q ss_pred cccHHHHHHHHhcccCCCcEEEE
Q 027517 119 VVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 119 ~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
++++..++++++++|||||++++
T Consensus 73 ~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 LEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999999975
No 35
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.85 E-value=4.2e-20 Score=129.24 Aligned_cols=186 Identities=17% Similarity=0.129 Sum_probs=137.6
Q ss_pred hhhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh
Q 027517 3 CFSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82 (222)
Q Consensus 3 ~~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (222)
|.++|-.|.+..+.... .++..+...+..+|.|+|||+|..+..+++++ |+..++|+|.|++|++.|++++
T Consensus 4 ~p~~Yl~F~~eRtRPa~-----dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl--- 74 (257)
T COG4106 4 NPDQYLQFEDERTRPAR-----DLLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL--- 74 (257)
T ss_pred CHHHHHHHHHhccCcHH-----HHHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC---
Confidence 56778777766554433 34556677778899999999999999999997 7889999999999999999887
Q ss_pred hhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhc
Q 027517 83 SKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDN 162 (222)
Q Consensus 83 ~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~ 162 (222)
+++++..+|+.+... ..+.|+++++.++++++|...++.++...|.|||.|.+..+..-..+....+.......
T Consensus 75 -----p~~~f~~aDl~~w~p-~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~ 148 (257)
T COG4106 75 -----PDATFEEADLRTWKP-EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEA 148 (257)
T ss_pred -----CCCceecccHhhcCC-CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcC
Confidence 799999999998763 46789999999999999999999999999999999998877665555544444332211
Q ss_pred ccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 163 VVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
++...++. ....-....++...-++|...+-++--..+...
T Consensus 149 ---p~~~~l~~------~~~~r~~v~s~a~Yy~lLa~~~~rvDiW~T~Y~ 189 (257)
T COG4106 149 ---PFAQELGG------RGLTRAPLPSPAAYYELLAPLACRVDIWHTTYY 189 (257)
T ss_pred ---chhhhhCc------cccccCCCCCHHHHHHHhCcccceeeeeeeecc
Confidence 11110000 000012356788888888888777655544443
No 36
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.85 E-value=3.7e-20 Score=128.59 Aligned_cols=171 Identities=24% Similarity=0.281 Sum_probs=129.4
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCee-EEeCCCCCcC-CCCCc
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE-WVEGDALDLP-FSDCF 106 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~ 106 (222)
++.......|||+|||||......-- .+..+|+++|.++.|-+.+.+..+... +.++. ++.++.++++ .++.+
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l~d~s 145 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQLADGS 145 (252)
T ss_pred HhcccCccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCcccccCC
Confidence 44444455789999999999876543 267799999999999999988875543 35777 8889999987 67899
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhh
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 186 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (222)
+|.|++..++....++.+.|++++++|||||++++.+........+..+.+...+........+ -
T Consensus 146 ~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dG---------------C 210 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDG---------------C 210 (252)
T ss_pred eeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccc---------------e
Confidence 9999999999999999999999999999999999999998776655554443332211111111 1
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEee
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 220 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 220 (222)
.++. +..+.|+++-|+..+..+.+.+.-..+++
T Consensus 211 ~ltr-d~~e~Leda~f~~~~~kr~~~~ttw~~V~ 243 (252)
T KOG4300|consen 211 VLTR-DTGELLEDAEFSIDSCKRFNFGTTWVIVE 243 (252)
T ss_pred EEeh-hHHHHhhhcccccchhhcccCCceEEEEe
Confidence 2344 44578889999999998888876655553
No 37
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.85 E-value=2.3e-19 Score=138.29 Aligned_cols=163 Identities=12% Similarity=0.182 Sum_probs=118.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+.+.....+..+|||+|||+|..+..+++.+ |+.+++++|. +.+++.++++....+.. ++++++.+|+.+.+++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~--~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA--DRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc--ceEEEEecCccCCCCC
Confidence 445555666778899999999999999999995 6779999997 78999998877654332 5799999999865554
Q ss_pred CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCc--hhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 104 DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQP--FTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
.+|+|++..++|++++ ...+++++++.|+|||++++.++..+... .......... ....
T Consensus 215 --~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~-----~~~~---------- 277 (306)
T TIGR02716 215 --EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYIL-----GAGM---------- 277 (306)
T ss_pred --CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHH-----Hccc----------
Confidence 3699999999998854 36799999999999999999987543322 1111111111 0000
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEEEe
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAKHY 208 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 208 (222)
........+.+++.++|+++||+.++..
T Consensus 278 -~~~~~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 278 -PFSVLGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred -ccccccCCCHHHHHHHHHHcCCCeeEec
Confidence 0011124457999999999999988754
No 38
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.85 E-value=3.1e-20 Score=129.18 Aligned_cols=164 Identities=28% Similarity=0.440 Sum_probs=121.2
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-CCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFS 103 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~ 103 (222)
+.+++ +|+.+|||+|||.|.+..++.+. .+.+.+|+|++++.+..+.++ .+.++++|+.+ + .++
T Consensus 7 I~~~I--~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~ 72 (193)
T PF07021_consen 7 IAEWI--EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFP 72 (193)
T ss_pred HHHHc--CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCC
Confidence 34444 67899999999999999999986 477999999999999888776 68899999986 3 378
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
+++||.|+++.++.++.++..+|+++.|+ |...+++.++.. .+...+.-.... ..|.. ..-.|++..++
T Consensus 73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg--~W~~R~~l~~~G--rmPvt----~~lPy~WYdTP 141 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFG--HWRNRLQLLLRG--RMPVT----KALPYEWYDTP 141 (193)
T ss_pred CCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChH--HHHHHHHHHhcC--CCCCC----CCCCCcccCCC
Confidence 89999999999999999999999988665 446655543311 111111111111 11111 11235666677
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeecCCe
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELSGGL 214 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 214 (222)
+.++.|.+++++++++.|+++.+......+.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 7889999999999999999999887766543
No 39
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.84 E-value=2.7e-20 Score=122.72 Aligned_cols=106 Identities=34% Similarity=0.545 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC-CCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~ 112 (222)
|+.+|||+|||+|..+..+++.. ++.+++++|+|+++++.++++....... +++.+++.|+ ..... .++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS--DRITFVQGDAEFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT--TTEEEEESCCHGGTTT-SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEECccccCccc-CCCCCEEEE
Confidence 57899999999999999999964 6789999999999999999998433222 7999999999 33333 356999999
Q ss_pred cc-cccCc---ccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 GY-GLRNV---VDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 ~~-~l~~~---~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.. .++++ ++..++++++++.|+|||++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99 55434 456889999999999999998864
No 40
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.83 E-value=5.1e-19 Score=132.04 Aligned_cols=106 Identities=35% Similarity=0.538 Sum_probs=93.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.. +++.++..|+.+.++++++||+|+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSN 105 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEh
Confidence 34689999999999999999884 56789999999999999887753 37889999999888777889999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
.++++..++..+++++.++|+|||.+++.++...
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 9999999999999999999999999999876543
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.82 E-value=1.4e-18 Score=123.56 Aligned_cols=145 Identities=23% Similarity=0.272 Sum_probs=113.1
Q ss_pred cchhhHHHHHHHHhh----CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCee
Q 027517 16 FGQHRIWKRMAVSWS----GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE 91 (222)
Q Consensus 16 ~~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (222)
...++.|.+++++.. ..+++.+|||+|||+|..+..+++.. ++.+|+++|+++++++.++++.+..+. .+++
T Consensus 23 ~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~ 98 (187)
T PRK00107 23 RDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL---KNVT 98 (187)
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC---CCEE
Confidence 344566777665533 23447899999999999999998764 677999999999999999998876543 4699
Q ss_pred EEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccC
Q 027517 92 WVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 171 (222)
Q Consensus 92 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (222)
+.++|+.+++. .++||+|+++. +.+...+++.+++.|+|||.+++.....
T Consensus 99 ~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------------- 148 (187)
T PRK00107 99 VVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRD------------------------- 148 (187)
T ss_pred EEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCC-------------------------
Confidence 99999988765 57899999975 3567889999999999999998864221
Q ss_pred ChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 172 GLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
...++.++.+..|+.+.+.+.+.
T Consensus 149 -----------------~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 149 -----------------PEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred -----------------hHHHHHHHHHhcCceEeeeEEEe
Confidence 23467778888899987776664
No 42
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.81 E-value=5.1e-19 Score=127.49 Aligned_cols=146 Identities=12% Similarity=0.024 Sum_probs=106.6
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+.+.+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++..... -++.....|+...+++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~- 92 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKAREN----LPLRTDAYDINAAALN- 92 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhC----CCceeEeccchhcccc-
Confidence 3445555556679999999999999999975 5699999999999999988764332 2466777777655544
Q ss_pred CceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 105 CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
++||+|+++.++++++ +...++++++++|+|||++++.+...........
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~---------------------------- 144 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM---------------------------- 144 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC----------------------------
Confidence 5799999999999884 5678999999999999997766543322100000
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEe
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHY 208 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~ 208 (222)
.....+++.++.++++ +|+++...
T Consensus 145 ~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 145 PFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CcCccCCHHHHHHHhC--CCeEEEee
Confidence 0012468899999885 68888766
No 43
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.81 E-value=7.5e-19 Score=129.25 Aligned_cols=172 Identities=23% Similarity=0.262 Sum_probs=120.3
Q ss_pred hhHHHHHHHHhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 19 HRIWKRMAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 19 ~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
...++..+++++. ..++.+|||+|||+|.++..+++. +.+++|+|+++++++.++++....... .++.+.+.|
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~--~~i~~~~~d 112 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVA--GNVEFEVND 112 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEECC
Confidence 3455566666665 456789999999999999999865 458999999999999999887543211 378999999
Q ss_pred CCCcCCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChh
Q 027517 97 ALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLA 174 (222)
Q Consensus 97 ~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (222)
+.+.+ ++||+|++..+++|++ +...+++++.+.+++++.+.+. . ........ .+..... ....
T Consensus 113 ~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~---~-~~~~~~~~-~~~~~~~-~~~~------ 177 (219)
T TIGR02021 113 LLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA---P-KTAWLAFL-KMIGELF-PGSS------ 177 (219)
T ss_pred hhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC---C-CchHHHHH-HHHHhhC-cCcc------
Confidence 88764 6799999999998885 3577899999988876555432 1 11111111 1111100 0000
Q ss_pred HHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeee
Q 027517 175 EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 216 (222)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 216 (222)
......+++++++.++++++||+++.......+.+.
T Consensus 178 ------~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 178 ------RATSAYLHPMTDLERALGELGWKIVREGLVSTGFYN 213 (219)
T ss_pred ------cccceEEecHHHHHHHHHHcCceeeeeecccccchh
Confidence 001124679999999999999999998877777654
No 44
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.80 E-value=2.2e-20 Score=120.34 Aligned_cols=97 Identities=31% Similarity=0.481 Sum_probs=65.8
Q ss_pred EEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-C-CCCceeEEEEcccc
Q 027517 39 LDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-F-SDCFFDAITMGYGL 116 (222)
Q Consensus 39 LdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~-~~~~~D~v~~~~~l 116 (222)
||+|||+|.++..+++.+ +..+++++|+|+.+++.++++...... .+......+..+.. . ..++||+|++..++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN---DNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC---cceeEEEeecCChhhcccccccceehhhhhH
Confidence 799999999999999986 677999999999999999998876543 23334443333321 1 22589999999999
Q ss_pred cCcccHHHHHHHHhcccCCCcEE
Q 027517 117 RNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 117 ~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
||++++..+++++++.|+|||+|
T Consensus 77 ~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999986
No 45
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.80 E-value=1.7e-18 Score=132.14 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=104.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....+ .++.+...|+...+. +++||+|++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEE
Confidence 34559999999999999999865 5699999999999999988765433 367888888877554 468999999
Q ss_pred cccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 113 GYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 113 ~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
..++++++ +...+++++.++|+|||++++............ ......+++
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------------------~p~~~~~~~ 242 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------------------MPFSFTFKE 242 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------------------CCCCcccCH
Confidence 99999885 568899999999999999777554332210000 000124688
Q ss_pred HHHHHHHHHcCCeEEEEe
Q 027517 191 KDLEKLALEIGFSRAKHY 208 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~ 208 (222)
.++.+.++ +|++++..
T Consensus 243 ~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 243 GELKDYYQ--DWEIVKYN 258 (287)
T ss_pred HHHHHHhC--CCEEEEEe
Confidence 99999985 59998864
No 46
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.80 E-value=5.1e-18 Score=126.09 Aligned_cols=167 Identities=20% Similarity=0.262 Sum_probs=117.6
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSD 104 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 104 (222)
+.......++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++..... .++.+...|..+.+ ...
T Consensus 40 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~ 112 (233)
T PRK05134 40 IREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAEHP 112 (233)
T ss_pred HHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhhcC
Confidence 334444557889999999999999888765 4589999999999999988764332 25677777777654 234
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
++||+|++..++++.+++..+++.+.++|+|||.+++..+........ .............. .....+
T Consensus 113 ~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~ 180 (233)
T PRK05134 113 GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYL---LAIVGAEYVLRMLP---------KGTHDY 180 (233)
T ss_pred CCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHH---HHHhhHHHHhhhcC---------cccCch
Confidence 689999999999999999999999999999999999886653221111 01000000000000 001123
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.++++++++.++++++||++++.....
T Consensus 181 ~~~~~~~~~~~~l~~~Gf~~v~~~~~~ 207 (233)
T PRK05134 181 KKFIKPSELAAWLRQAGLEVQDITGLH 207 (233)
T ss_pred hhcCCHHHHHHHHHHCCCeEeeeeeEE
Confidence 457799999999999999999876443
No 47
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.79 E-value=3e-18 Score=127.08 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=114.8
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
.-+|.+ +...+..-.+++|||||||+|.++..++.. ++ ..|+|+|.++......+--..-.+.. ..+......++
T Consensus 101 d~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~QF~~i~~~lg~~--~~~~~lplgvE 175 (315)
T PF08003_consen 101 DWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQFEAIKHFLGQD--PPVFELPLGVE 175 (315)
T ss_pred cchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHHHHHHHHHhCCC--ccEEEcCcchh
Confidence 344533 445554456889999999999999999977 33 37999999887665533221111111 23445556777
Q ss_pred CcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHH
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQ 178 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (222)
+++. .+.||+|+|.++|+|..++...|+.+++.|+|||.|++.+..-+....... .+. ..|.
T Consensus 176 ~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L----------~P~-------~rYa 237 (315)
T PF08003_consen 176 DLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVL----------VPE-------DRYA 237 (315)
T ss_pred hccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEE----------ccC-------Cccc
Confidence 7776 578999999999999999999999999999999999987665332211000 000 0011
Q ss_pred HhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 179 YLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.+. +.--..|...+..+|+++||+.+++....
T Consensus 238 ~m~-nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 238 KMR-NVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred CCC-ceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 010 11124589999999999999999876554
No 48
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.78 E-value=5.6e-18 Score=119.61 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=103.6
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+.+.+...++.++||+|||.|+.+..|+++ +..|+++|.|+.+++.+++...... -.+...+.|+.+..++ +
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~ 93 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-E 93 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-T
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-C
Confidence 444455556779999999999999999976 7799999999999999887665433 3588899999887765 6
Q ss_pred ceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHh
Q 027517 106 FFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSS 183 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (222)
.||+|++..++++++ ..+.+++.+.+.++|||++++........ +.... .
T Consensus 94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~~~---------------------------~ 145 (192)
T PF03848_consen 94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPCPS---------------------------P 145 (192)
T ss_dssp TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S--SS----------------------------
T ss_pred CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCCCC---------------------------C
Confidence 799999988888884 46789999999999999988865543221 11000 0
Q ss_pred HhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 184 IREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 184 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
....+.+.|+.+.+. ||+++...+..
T Consensus 146 ~~f~~~~~EL~~~y~--dW~il~y~E~~ 171 (192)
T PF03848_consen 146 FPFLLKPGELREYYA--DWEILKYNEDV 171 (192)
T ss_dssp -S--B-TTHHHHHTT--TSEEEEEEEEE
T ss_pred CCcccCHHHHHHHhC--CCeEEEEEccc
Confidence 012356678888884 89998755443
No 49
>PLN03075 nicotianamine synthase; Provisional
Probab=99.78 E-value=1.4e-17 Score=124.91 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=87.7
Q ss_pred CCCCeEEEecCCCChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhh-hhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL-VSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
.++++|+|||||.|.++ ..+++...++++++++|+++++++.|++.... .+ ..+++.|..+|+.+.....++||+|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g--L~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD--LSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC--ccCCcEEEECchhhcccccCCcCEE
Confidence 36789999999988654 44444445778999999999999999998843 22 2268999999998854334679999
Q ss_pred EEcccccCc--ccHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNV--VDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++. +++++ +++.++++++++.|+|||.+++..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999 88888 688999999999999999998864
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.78 E-value=4e-17 Score=115.89 Aligned_cols=114 Identities=24% Similarity=0.303 Sum_probs=87.9
Q ss_pred hHHHHHHHHh---hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 20 RIWKRMAVSW---SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 20 ~~~~~~~~~~---~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
..|.+.+.+. ...-++.+|||+|||+|..+..++.. .+..+|+++|.++.+++.++++....+. .+++++++|
T Consensus 25 ~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d 100 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGR 100 (181)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecc
Confidence 4455544332 22234789999999999999988866 4567899999999999999887765432 479999999
Q ss_pred CCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 97 ALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 97 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+.+++ ..++||+|++.. ++ +...+++.+++.|+|||.+++.
T Consensus 101 ~~~~~-~~~~fD~I~s~~-~~---~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 101 AEDFQ-HEEQFDVITSRA-LA---SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hhhcc-ccCCccEEEehh-hh---CHHHHHHHHHHhcCCCCEEEEE
Confidence 98864 346899999876 33 4566788889999999999875
No 51
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.77 E-value=3.9e-17 Score=120.71 Aligned_cols=160 Identities=22% Similarity=0.265 Sum_probs=113.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~ 112 (222)
.+.+|||+|||+|.++..+++. ..+++++|+++.+++.++++...... .++.+...|+.+.+.. .++||+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPL---LKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhcCCCCCccEEEe
Confidence 4679999999999999888765 34799999999999999887654321 2578888888776543 368999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
..++++..++..+++.+.+.|+|||.+++.......... ............... ........+++..+
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 186 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSY---LLAIVGAEYILRIVP---------KGTHDWEKFIKPSE 186 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHH---HHHHHhhhhhhhcCC---------CCcCChhhcCCHHH
Confidence 999999999999999999999999999887665332111 111110000000000 00011234668899
Q ss_pred HHHHHHHcCCeEEEEeeec
Q 027517 193 LEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~ 211 (222)
+.++++++||++++.....
T Consensus 187 l~~~l~~~G~~i~~~~~~~ 205 (224)
T TIGR01983 187 LTSWLESAGLRVKDVKGLV 205 (224)
T ss_pred HHHHHHHcCCeeeeeeeEE
Confidence 9999999999998876543
No 52
>PRK04266 fibrillarin; Provisional
Probab=99.77 E-value=6e-17 Score=118.58 Aligned_cols=143 Identities=21% Similarity=0.144 Sum_probs=100.1
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----CCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSD 104 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~ 104 (222)
.+...++.+|||+|||+|.++..+++..+ .++|+++|+++.+++...++.... .++.++.+|+... +++
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l~- 139 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHVV- 139 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhcc-
Confidence 36778899999999999999999998864 568999999999998776664322 4889999998752 122
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
++||+|++.... ......++++++++|||||.++++-...... +... .
T Consensus 140 ~~~D~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d-~~~~----------------------------~- 187 (226)
T PRK04266 140 EKVDVIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLAIKARSID-VTKD----------------------------P- 187 (226)
T ss_pred ccCCEEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEEEeccccc-CcCC----------------------------H-
Confidence 469999964321 1122456899999999999999852221100 0000 0
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.+. . ++..+.++++||++++..+...
T Consensus 188 ~~~-~-~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 188 KEI-F-KEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred HHH-H-HHHHHHHHHcCCeEEEEEcCCC
Confidence 001 1 3445999999999999887653
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.77 E-value=1.1e-18 Score=112.66 Aligned_cols=96 Identities=33% Similarity=0.606 Sum_probs=78.6
Q ss_pred EEEecCCCChhHHHHHHHh--CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc-c
Q 027517 38 VLDVCCGSGDLSFLLSEQV--GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG-Y 114 (222)
Q Consensus 38 vLdiG~G~G~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~-~ 114 (222)
|||+|||+|..+..+.+.+ ++..+++++|+|+++++.++++....+ .++++.+.|+.+++...++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999886 233699999999999999999876533 48999999999987767799999995 4
Q ss_pred cccCcc--cHHHHHHHHhcccCCCc
Q 027517 115 GLRNVV--DKRKALEESFRVLKPGS 137 (222)
Q Consensus 115 ~l~~~~--~~~~~l~~~~~~l~~gG 137 (222)
+++|++ +...+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 488885 46889999999999998
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.77 E-value=4.4e-17 Score=113.76 Aligned_cols=143 Identities=21% Similarity=0.306 Sum_probs=103.1
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCcee
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 108 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (222)
.++...-.++||+|||.|.++..|+... .+++++|+++.+++.++++.... ++|++.+.|+.+. .|.++||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~FD 108 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRFD 108 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCee
Confidence 4566666799999999999999999773 48999999999999999998654 5899999999875 3568899
Q ss_pred EEEEcccccCccc---HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 109 AITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 109 ~v~~~~~l~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
+|+++.+++++.+ ...+++.+...|+|||.+++..... .... .+.
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------~~c~-------------------------~wg 156 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-------ANCR-------------------------RWG 156 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------HHHH-------------------------HTT
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------Cccc-------------------------ccC
Confidence 9999999999964 5678999999999999999976531 1111 112
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCC
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
+.+..+.+.++|++. |..++.....++
T Consensus 157 h~~ga~tv~~~~~~~-~~~~~~~~~~~~ 183 (201)
T PF05401_consen 157 HAAGAETVLEMLQEH-LTEVERVECRGG 183 (201)
T ss_dssp -S--HHHHHHHHHHH-SEEEEEEEEE-S
T ss_pred cccchHHHHHHHHHH-hhheeEEEEcCC
Confidence 345677888888877 777776666554
No 55
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.76 E-value=2.8e-17 Score=126.04 Aligned_cols=186 Identities=11% Similarity=0.058 Sum_probs=118.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCCCCC----ce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDC----FF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~----~~ 107 (222)
+++.+|||+|||+|..+..+++.+....+|+++|+|++|++.+.+++....+. .++..+++|+.+ .+.+.. ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~--~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ--LEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC--ceEEEEEEcccchhhhhcccccCCe
Confidence 45679999999999999999988643568999999999999999886542211 246678899876 333322 23
Q ss_pred eEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCc-hhhH----------H--------HHHHhh-----
Q 027517 108 DAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQP-FTTA----------I--------QEWMID----- 161 (222)
Q Consensus 108 D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~-~~~~----------~--------~~~~~~----- 161 (222)
.++++..++++++ +...+++++++.|+|||.+++..-...... .... + .+.+..
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~aY~d~~g~t~~F~~N~L~~~n~~l~~~f~~~ 219 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAAYNDAAGVTAAFNLNLLRRLNRELGGDFDPD 219 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHhhcCchhhHHHHHHHHHHHHHHHhccCCChH
Confidence 4555566777775 467899999999999999987432221111 0000 0 000000
Q ss_pred -----ccccccc----cc----------CC----hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeE
Q 027517 162 -----NVVVPVA----SG----------YG----LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNL 218 (222)
Q Consensus 162 -----~~~~~~~----~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~ 218 (222)
....+.. .. .. .....+.+.....+.|+.++++.+++++||++++.+..+.+.++++
T Consensus 220 ~~~~~~~~~~~~~~ie~~l~~~~~~~v~~~~~~~~~~~ge~ih~e~S~ky~~~~~~~~l~~aGf~~~~~~~d~~~~~~~~ 299 (301)
T TIGR03438 220 AFRHRAFYNEERSRIEMHLVSRRDQTVRLAGLTVRFAAGETIHTENSYKFSLERFAALAAAAGLRPEQVWTDPNDWFSLH 299 (301)
T ss_pred HcEEEEEEcCCcCeEEEEEEeCCCEEEEECCeEEEecCCCEEeEEEecCCCHHHHHHHHHHCCCceeEEEECCCCCeEEE
Confidence 0000000 00 00 0000111111233779999999999999999999999999888877
Q ss_pred ee
Q 027517 219 VA 220 (222)
Q Consensus 219 ~~ 220 (222)
++
T Consensus 300 l~ 301 (301)
T TIGR03438 300 LL 301 (301)
T ss_pred eC
Confidence 53
No 56
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.76 E-value=1.7e-17 Score=126.83 Aligned_cols=164 Identities=16% Similarity=0.123 Sum_probs=103.8
Q ss_pred HHHHHHhhCC---CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh--cCCCeeEEeCCC
Q 027517 23 KRMAVSWSGA---KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDA 97 (222)
Q Consensus 23 ~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~d~ 97 (222)
.+.++.++.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....... ...++.+...|+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 3445555532 25679999999999999999965 468999999999999999886532110 013578888887
Q ss_pred CCcCCCCCceeEEEEcccccCcccH--HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhH
Q 027517 98 LDLPFSDCFFDAITMGYGLRNVVDK--RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAE 175 (222)
Q Consensus 98 ~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (222)
.++ +++||+|+|..+++|+++. ..+++.+.+ +.++|.+ +... +.......+. ...+... +...
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~li-Is~~--p~~~~~~~l~-~~g~~~~----g~~~--- 271 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLI-ISFA--PKTLYYDILK-RIGELFP----GPSK--- 271 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEE-EEeC--CcchHHHHHH-HHHhhcC----CCCc---
Confidence 654 4679999999999988653 456676665 4555554 4321 1111111111 1111000 0000
Q ss_pred HHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 176 EYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
.....++++++++++++++||++......
T Consensus 272 ------~~r~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 272 ------ATRAYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred ------CceeeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 00012458999999999999998765433
No 57
>PRK06922 hypothetical protein; Provisional
Probab=99.76 E-value=1.1e-17 Score=136.39 Aligned_cols=112 Identities=26% Similarity=0.428 Sum_probs=92.6
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCce
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFF 107 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~ 107 (222)
....++.+|||+|||+|..+..+++.. ++.+++|+|+|+.+++.++++..... .++.++++|+.+++ +++++|
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchHhCccccCCCCE
Confidence 344467899999999999999888875 67899999999999999988754322 46788899988876 667889
Q ss_pred eEEEEcccccCc-------------ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 108 DAITMGYGLRNV-------------VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 108 D~v~~~~~l~~~-------------~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|+|+++.++|++ .+...++++++++|||||.+++.+...
T Consensus 489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 999999988865 245789999999999999999987543
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.76 E-value=9.6e-17 Score=115.21 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=107.1
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
..+..++..+...++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++...... .++++..+|...
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~d~~~- 92 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPGEAPI- 92 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEecCchh-
Confidence 344455666677788899999999999999999874 667999999999999999988755432 468888888753
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHh
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYL 180 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (222)
+. .++||+|++.....+ ...+++.+.+.|+|||.+++.....
T Consensus 93 ~~-~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~---------------------------------- 134 (187)
T PRK08287 93 EL-PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL---------------------------------- 134 (187)
T ss_pred hc-CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH----------------------------------
Confidence 23 357999999776543 4668899999999999998753221
Q ss_pred HHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 181 KSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
-+..++.++++++||+.++.....
T Consensus 135 -------~~~~~~~~~l~~~g~~~~~~~~~~ 158 (187)
T PRK08287 135 -------ENLHSALAHLEKCGVSELDCVQLQ 158 (187)
T ss_pred -------hhHHHHHHHHHHCCCCcceEEEEE
Confidence 134577789999999877654443
No 59
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.75 E-value=2.6e-17 Score=118.80 Aligned_cols=157 Identities=23% Similarity=0.349 Sum_probs=105.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~v 110 (222)
+++.+|||+|||+|.++..+++.. +..++++|+++++++.++++ ++++++.|+.+ + ++++++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccccCCCCcCEE
Confidence 466799999999999998887653 45789999999999888643 56788888765 3 3556789999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
+++.+++|++++..+++++.+.++ ..++..+. ..........+.... .+..... .+.+....+.++++.
T Consensus 80 i~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~---~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~s~ 148 (194)
T TIGR02081 80 ILSQTLQATRNPEEILDEMLRVGR---HAIVSFPN---FGYWRVRWSILTKGR-MPVTGEL----PYDWYNTPNIHFCTI 148 (194)
T ss_pred EEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCC---hhHHHHHHHHHhCCc-cccCCCC----CccccCCCCcccCcH
Confidence 999999999999999999887654 44443221 111111111111100 1111000 011112223457899
Q ss_pred HHHHHHHHHcCCeEEEEeeecC
Q 027517 191 KDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
+++.++++++||++++...+..
T Consensus 149 ~~~~~ll~~~Gf~v~~~~~~~~ 170 (194)
T TIGR02081 149 ADFEDLCGELNLRILDRAAFDV 170 (194)
T ss_pred HHHHHHHHHCCCEEEEEEEecc
Confidence 9999999999999998776643
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.75 E-value=2.8e-16 Score=111.97 Aligned_cols=134 Identities=19% Similarity=0.165 Sum_probs=103.7
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCce
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 107 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (222)
+.+...++.+|||+|||+|..+..+++.. .+++++|+++++++.++++....+ .++++..+|+.+.. .++|
T Consensus 13 ~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~~~f 83 (179)
T TIGR00537 13 ANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--RGKF 83 (179)
T ss_pred HHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--CCcc
Confidence 33444566799999999999999998762 289999999999999999875433 36788888987643 3589
Q ss_pred eEEEEcccccCccc---------------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccccc
Q 027517 108 DAITMGYGLRNVVD---------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVP 166 (222)
Q Consensus 108 D~v~~~~~l~~~~~---------------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (222)
|+|+++..+++.++ ...+++++.++|+|||.+++......
T Consensus 84 D~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------- 144 (179)
T TIGR00537 84 DVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------- 144 (179)
T ss_pred cEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-------------------
Confidence 99999988876643 34679999999999999988754321
Q ss_pred ccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 167 VASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
...++.+.+++.||......+..
T Consensus 145 ----------------------~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 145 ----------------------GEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred ----------------------ChHHHHHHHHhCCCeEEEEEEee
Confidence 24577899999999887666543
No 61
>PTZ00146 fibrillarin; Provisional
Probab=99.75 E-value=1.7e-16 Score=118.58 Aligned_cols=144 Identities=18% Similarity=0.135 Sum_probs=98.5
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---CCCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDC 105 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~ 105 (222)
.+.+.++.+|||+|||+|.++.++++.+++...|+++|+++.+++...+..... +|+.++..|+... ....+
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCEEEECCccChhhhhcccC
Confidence 345688999999999999999999999876779999999987553333322111 5889999998642 12235
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
++|+|++... ...+...++.++.++|||||.+++. +............
T Consensus 202 ~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~-ika~~id~g~~pe----------------------------- 249 (293)
T PTZ00146 202 MVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS-IKANCIDSTAKPE----------------------------- 249 (293)
T ss_pred CCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE-EeccccccCCCHH-----------------------------
Confidence 7999998774 2223345667899999999999883 2221111100000
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
..++ +|+ +.|+++||++++..+..
T Consensus 250 ~~f~-~ev-~~L~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 250 VVFA-SEV-QKLKKEGLKPKEQLTLE 273 (293)
T ss_pred HHHH-HHH-HHHHHcCCceEEEEecC
Confidence 1122 345 88899999998887765
No 62
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.74 E-value=2.4e-17 Score=134.54 Aligned_cols=149 Identities=21% Similarity=0.215 Sum_probs=110.7
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC--cC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LP 101 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~ 101 (222)
..++..+...++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++.... .+++.+++.|+.+ ++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLN 98 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccC
Confidence 45556666566779999999999999999976 34899999999999887653211 1578999999864 45
Q ss_pred CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHH
Q 027517 102 FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQY 179 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (222)
+++++||+|++..+++|+++ ...++++++++|||||++++.+............
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~------------------------ 154 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRK------------------------ 154 (475)
T ss_pred CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccccc------------------------
Confidence 66778999999999999976 5789999999999999999987543221000000
Q ss_pred hHHhHhhcCCHHHHHHHHHHcCCeEEE
Q 027517 180 LKSSIREFLTGKDLEKLALEIGFSRAK 206 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 206 (222)
.......+...|.+++.++||....
T Consensus 155 --~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 155 --NNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred --CCCCeecChHHHHHHHHHheeccCC
Confidence 0001234577899999999988764
No 63
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.74 E-value=1.8e-17 Score=118.17 Aligned_cols=173 Identities=19% Similarity=0.248 Sum_probs=120.9
Q ss_pred chhhHHHHHHHHhhCCCCCC--eEEEecCCCChhHHHHHHHhCCC--CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE
Q 027517 17 GQHRIWKRMAVSWSGAKTGD--NVLDVCCGSGDLSFLLSEQVGSQ--GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92 (222)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (222)
..+++..+..-++....... +|||+|||.|.....+.+.. ++ ..++++|.|+.+++..+++..... .++..
T Consensus 52 kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~a 126 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEA 126 (264)
T ss_pred chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch----hhhcc
Confidence 33444444444444443333 89999999999999998873 44 689999999999999998875544 46666
Q ss_pred EeCCCCCc----CCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHH-HHhhcccc
Q 027517 93 VEGDALDL----PFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE-WMIDNVVV 165 (222)
Q Consensus 93 ~~~d~~~~----~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~ 165 (222)
.+.|+... +...+++|+|++.++|..++ ...++++++.++|||||.+++-++...+.....+... .+.++..+
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYV 206 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYV 206 (264)
T ss_pred cceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEE
Confidence 66776642 34467899999999999884 4688999999999999999999988755332222111 01111111
Q ss_pred cccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEE
Q 027517 166 PVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKH 207 (222)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 207 (222)
.-.+ ....+++.+++.+++.++||..++.
T Consensus 207 RgDG-------------T~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 207 RGDG-------------TRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred ccCC-------------ceeeeccHHHHHHHHHhcccchhcc
Confidence 1111 1124789999999999999997653
No 64
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.74 E-value=4.9e-17 Score=128.12 Aligned_cols=112 Identities=27% Similarity=0.272 Sum_probs=93.1
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+.+.+...++.+|||+|||+|.++..+++.. +.+|+++|+|+++++.++++... .++++...|..++ +
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---~ 226 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---N 226 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---C
Confidence 34556677888999999999999999998874 56999999999999999988632 2477788887665 3
Q ss_pred CceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 105 CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
++||.|++..+++|+. +...+++++.++|||||.+++.++..+
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 6799999999999984 457899999999999999999877654
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.74 E-value=7.5e-17 Score=117.16 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=91.0
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+.+.+...++.+|||+|||+|..+..+++..++.++++++|+++++++.+++++...+.. .++++..+|..+..
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~--~~v~~~~~d~~~~~ 137 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW--GVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEECCcccCC
Confidence 3455666667778889999999999999999988655679999999999999999887654321 35899999987744
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+||.|++..++.+++ +++.+.|+|||++++..
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 3456899999999887765 35778899999997753
No 66
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.73 E-value=1.4e-16 Score=115.24 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=87.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|..+..+++.. ++.+++|+|+|+++++.++++. +++.+.++|+.+ ++++++||+|+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~ 110 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVL 110 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEE
Confidence 3566799999999999999998874 5679999999999999998764 467788889887 67778999999
Q ss_pred EcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 112 MGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 112 ~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
++.+++|++ +...+++++.+++ ++.+++.+...+.
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 999999985 3578899999987 5688888775433
No 67
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.73 E-value=2e-16 Score=117.38 Aligned_cols=156 Identities=22% Similarity=0.258 Sum_probs=104.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++....+.. .++.+...|+.. ..++||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~---~~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLA--GNITFEVGDLES---LLGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCc--cCcEEEEcCchh---ccCCcCEEEE
Confidence 56779999999999999999865 357999999999999999887543321 478888888433 3467999999
Q ss_pred cccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCH
Q 027517 113 GYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTG 190 (222)
Q Consensus 113 ~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
..+++|++ +...+++++.+.+++++.+.+ .. ........ .... ...... . .......++.
T Consensus 134 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~--~~--~~~~~~~~-~~l~-~~~~~~-~-----------~~~~~~~~~~ 195 (230)
T PRK07580 134 LDVLIHYPQEDAARMLAHLASLTRGSLIFTF--AP--YTPLLALL-HWIG-GLFPGP-S-----------RTTRIYPHRE 195 (230)
T ss_pred cchhhcCCHHHHHHHHHHHHhhcCCeEEEEE--CC--ccHHHHHH-HHhc-cccCCc-c-----------CCCCccccCH
Confidence 99998876 446788888887654433322 11 11111111 1110 000000 0 0011235688
Q ss_pred HHHHHHHHHcCCeEEEEeeecCCe
Q 027517 191 KDLEKLALEIGFSRAKHYELSGGL 214 (222)
Q Consensus 191 ~~~~~~l~~~Gf~~~~~~~~~~~~ 214 (222)
.++.++++++||++.+......+.
T Consensus 196 ~~~~~~l~~~Gf~~~~~~~~~~~~ 219 (230)
T PRK07580 196 KGIRRALAAAGFKVVRTERISSGF 219 (230)
T ss_pred HHHHHHHHHCCCceEeeeeccchh
Confidence 999999999999999988776553
No 68
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.72 E-value=9.2e-17 Score=116.36 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=86.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC-CCcC--CCCCceeEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLP--FSDCFFDAI 110 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D~v 110 (222)
++.+|||+|||+|..+..+++.. +..+++++|+++++++.++++...... +++.++++|+ ..++ +++++||.|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL---TNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC---CCEEEEecCHHHHHHHHcCccccceE
Confidence 56799999999999999998875 567899999999999999988754332 5799999998 6554 556789999
Q ss_pred EEcccccCcc--------cHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVV--------DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~--------~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++++...+.. ....+++++.++|+|||.+++..
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 9977543321 14678999999999999998864
No 69
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.72 E-value=2.1e-16 Score=105.93 Aligned_cols=115 Identities=26% Similarity=0.321 Sum_probs=90.1
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L 100 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~ 100 (222)
.+..+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+. .++.+...|+.. .
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGV---SNIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCC---CceEEEeccccccC
Confidence 34455566666677899999999999999999885 457999999999999999987755432 478888888764 2
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+...++||.|++..... ....+++.+.+.|+|||.+++..
T Consensus 83 ~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 22235799999977544 34688999999999999998764
No 70
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.72 E-value=6.2e-16 Score=111.90 Aligned_cols=115 Identities=25% Similarity=0.433 Sum_probs=91.2
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P 101 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~ 101 (222)
+...+..+...++.+|||+|||+|.++..+++..++..+++++|+++++++.++++....+. ..++.++.+|..+. +
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~~~l~ 106 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAPEILF 106 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechhhhHh
Confidence 34445666778889999999999999999888765667999999999999999988765431 15788988888763 2
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...++||.|++.. ...++..+++.+.+.|+|||++++.
T Consensus 107 ~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 107 TINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred hcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 2235799999865 2346688999999999999999863
No 71
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.72 E-value=7.1e-17 Score=121.34 Aligned_cols=110 Identities=19% Similarity=0.190 Sum_probs=85.3
Q ss_pred CCCeEEEecCCCChh----HHHHHHHhCC----CCcEEEEeCChhHHHHHhcchhhh-----------------------
Q 027517 34 TGDNVLDVCCGSGDL----SFLLSEQVGS----QGKVIGLDFSKNQLSMASSRQDLV----------------------- 82 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~----~~~l~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~----------------------- 82 (222)
++.+|+|+|||+|.. +..+++..+. +.+++|+|+|+.+++.|++.....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 456999999999974 3344444321 468999999999999999864210
Q ss_pred -hhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEe
Q 027517 83 -SKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 83 -~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
......++.+.+.|+.+.+.+.++||+|+|.++++|++ +..++++++++.|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 00112478999999998776667899999999999996 45689999999999999999854
No 72
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.71 E-value=6.4e-16 Score=112.34 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=85.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh---------hhhcCCCeeEEeCCCCCcCCC
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV---------SKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~d~~~~~~~ 103 (222)
.++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+.+..... ......++++.++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 46679999999999999999965 779999999999999853321100 000124789999999887532
Q ss_pred -CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 -DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 -~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++||.|+-..+++|++. ....++.+.++|||||++++..+..
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 357999999888888853 5678999999999999877776654
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.71 E-value=2e-16 Score=115.45 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=91.2
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+++.+...++.+|||+|||+|..+..+++..++.++++++|+++++++.+++++...+. .++.+..+|....
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~---~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY---DNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCeEEEECCcccC
Confidence 3345566677778899999999999999999998866667999999999999999998865543 5799999998765
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
..+..+||+|++.....+++ +.+.+.|||||++++.
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 44457899999988766543 3466689999998875
No 74
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.71 E-value=1.9e-16 Score=111.76 Aligned_cols=116 Identities=28% Similarity=0.406 Sum_probs=91.2
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
+.+.+.+...+..+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+. .++++...|..+.. +
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~~-~ 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEAL-P 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTTC-C
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc---cccccccccccccc-c
Confidence 455555555477899999999999999999874 666799999999999999999876654 24889999987633 3
Q ss_pred CCceeEEEEcccccCccc-----HHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+++||+|+++-.++.-.+ ...+++...++|+|||.++++..
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 578999999998776543 57889999999999999977543
No 75
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.70 E-value=5.9e-16 Score=113.45 Aligned_cols=112 Identities=22% Similarity=0.208 Sum_probs=90.1
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....+++.+...++.+|||+|||+|..+..+++..++.++|+++|+++++++.+++++...+. .+++++.+|..+..
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~---~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL---DNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC---CCeEEEECCcccCC
Confidence 335566677788899999999999999999998865556799999999999999998866543 57999999987654
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
....+||+|++.....+++ +.+.+.|+|||++++.
T Consensus 142 ~~~~~fD~Ii~~~~~~~~~------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKIP------EALIDQLKEGGILVMP 176 (215)
T ss_pred cccCCCCEEEEcCCccccc------HHHHHhcCcCcEEEEE
Confidence 3346899999987665543 4577889999999875
No 76
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.70 E-value=1.8e-15 Score=113.77 Aligned_cols=144 Identities=22% Similarity=0.312 Sum_probs=106.9
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+. ..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+. .++.+.++|+.+ +++
T Consensus 78 ~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~-~~~ 151 (251)
T TIGR03534 78 EAALERLK-KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDWFE-PLP 151 (251)
T ss_pred HHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhc-cCc
Confidence 33444443 344689999999999999999875 567999999999999999988765432 468999999876 344
Q ss_pred CCceeEEEEcccccCccc--------------------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHH
Q 027517 104 DCFFDAITMGYGLRNVVD--------------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQE 157 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~ 157 (222)
.++||+|+++..+....+ ...+++++.+.|+|||.+++...
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------- 218 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------- 218 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-------------
Confidence 578999999765442111 13678899999999999987421
Q ss_pred HHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCee
Q 027517 158 WMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLM 215 (222)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 215 (222)
....+++.++++++||+.+++.....+..
T Consensus 219 -----------------------------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~ 247 (251)
T TIGR03534 219 -----------------------------YDQGEAVRALFEAAGFADVETRKDLAGKD 247 (251)
T ss_pred -----------------------------ccHHHHHHHHHHhCCCCceEEEeCCCCCc
Confidence 11245788999999999888776655543
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=99.70 E-value=2.9e-15 Score=107.74 Aligned_cols=150 Identities=23% Similarity=0.283 Sum_probs=106.7
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
.+.+...++.+|||+|||+|..+..+++. +.+++++|+++++++.++++........ .++.+...|+.+. +.+.+
T Consensus 16 ~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~d~~~~-~~~~~ 90 (188)
T PRK14968 16 AENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRN-NGVEVIRSDLFEP-FRGDK 90 (188)
T ss_pred HHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCC-cceEEEecccccc-ccccC
Confidence 33444467789999999999999999876 4689999999999999988765433210 1278888887663 34457
Q ss_pred eeEEEEcccccCc---------------------ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccc
Q 027517 107 FDAITMGYGLRNV---------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVV 165 (222)
Q Consensus 107 ~D~v~~~~~l~~~---------------------~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 165 (222)
||+|+++..+... .....+++++.++|+|||.+++....
T Consensus 91 ~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~-------------------- 150 (188)
T PRK14968 91 FDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS-------------------- 150 (188)
T ss_pred ceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc--------------------
Confidence 9999987765431 11356799999999999998775322
Q ss_pred cccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEee--ecCCeeeeEeeeC
Q 027517 166 PVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE--LSGGLMGNLVATR 222 (222)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~~~k 222 (222)
....+++.++++++||++..... +.......++.+|
T Consensus 151 ---------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 151 ---------------------LTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred ---------------------cCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 11335778899999998776543 3444555555554
No 78
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.69 E-value=3.1e-15 Score=117.03 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=107.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~ 111 (222)
+++.+|||+|||+|..+..+++.. ++.+++++|+|+++++.++++....+ .++.++++|+.+...+ .++||+|+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhccccccCCCccEEE
Confidence 345699999999999999988773 56799999999999999999876543 3789999998664322 35799999
Q ss_pred EcccccCcc---------------------c----HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccccc
Q 027517 112 MGYGLRNVV---------------------D----KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVP 166 (222)
Q Consensus 112 ~~~~l~~~~---------------------~----~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (222)
++-...... + ..++++.+.+.|+|||.+++. ...
T Consensus 325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE-iG~-------------------- 383 (423)
T PRK14966 325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE-HGF-------------------- 383 (423)
T ss_pred ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE-ECc--------------------
Confidence 977642110 0 236677777899999998653 211
Q ss_pred ccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeee
Q 027517 167 VASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
-..+.+.+++++.||..+++.....|...+++++
T Consensus 384 ---------------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 384 ---------------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred ---------------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 1346788999999999999888888877777665
No 79
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.69 E-value=6.6e-16 Score=120.57 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=93.2
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
.+.+++.++...+.+|||+|||+|..+..+++.. |..+++++|.|+.+++.++++..........++++...|..+. .
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~ 294 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V 294 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C
Confidence 4556676665556799999999999999999884 7789999999999999999887654322123678888887653 2
Q ss_pred CCCceeEEEEcccccCcc-----cHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVV-----DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+..+||+|+|+..+|... ...++++..+++|+|||.++++.
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 345799999998877542 23578999999999999998874
No 80
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.69 E-value=4.1e-15 Score=113.25 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=112.0
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+.......++.+|||+|||+|..+..++... +..+++++|+++.+++.++++.... ...++.+..+|+.+.
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~- 170 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEP- 170 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCc-
Confidence 33444434445567799999999999999999885 5679999999999999999887511 125789999998653
Q ss_pred CCCCceeEEEEcccccCc--------------------------ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHH
Q 027517 102 FSDCFFDAITMGYGLRNV--------------------------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI 155 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~--------------------------~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~ 155 (222)
.+.++||+|+++...... .....+++++.+.|+|||.+++.. .
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g---------- 239 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G---------- 239 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C----------
Confidence 234689999997553211 113567888889999999998732 1
Q ss_pred HHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 156 QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
....+++.+++++.||..++......+...+++++|
T Consensus 240 -------------------------------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 240 -------------------------------YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred -------------------------------chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEEC
Confidence 012346888999999998887766667666766654
No 81
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.69 E-value=5.1e-15 Score=102.64 Aligned_cols=116 Identities=26% Similarity=0.383 Sum_probs=97.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+..+...+..+...|+.+++|+|||+|..+..++.. .+.++++++|-++++++..+++..+.+. +|++++.+++.+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~ 95 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPE 95 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchH
Confidence 445556677788899999999999999999999944 7889999999999999999999988774 799999999987
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.-....++|.|+.... . +.+.+++.+...|||||++++..
T Consensus 96 ~L~~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 96 ALPDLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred hhcCCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEe
Confidence 4222237999999887 3 45788999999999999998753
No 82
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.69 E-value=7.1e-16 Score=116.96 Aligned_cols=98 Identities=29% Similarity=0.439 Sum_probs=81.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCC--CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQ--GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
+..+|||+|||+|.++..+++.++.. ..++|+|+|+.+++.+.++. +++.+.++|+.++|+++++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--------~~~~~~~~d~~~lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--------PQVTFCVASSHRLPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--------CCCeEEEeecccCCCcCCceeEEE
Confidence 45689999999999999998875322 37999999999999998764 578899999999888888999999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+.+.. ..++++.++|||||.+++..+..
T Consensus 157 ~~~~~-------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 157 RIYAP-------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EecCC-------CCHHHHHhhccCCCEEEEEeCCC
Confidence 86542 23578999999999999887554
No 83
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.68 E-value=1.9e-15 Score=112.77 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=106.1
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+......++..+|+|||+|.|.++..+++.+ |+.+++.+|. |+.++.+++. ++++++.+|+. .++|.
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~~---------~rv~~~~gd~f-~~~P~ 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKEA---------DRVEFVPGDFF-DPLPV 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHHT---------TTEEEEES-TT-TCCSS
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhccccc---------cccccccccHH-hhhcc
Confidence 34455566777899999999999999999995 7889999998 8888888771 69999999998 45554
Q ss_pred CceeEEEEcccccCccc--HHHHHHHHhcccCCC--cEEEEEecCCCCCchhhHHH---HHHhhcccccccccCChhHHH
Q 027517 105 CFFDAITMGYGLRNVVD--KRKALEESFRVLKPG--SRISVLDFNKSTQPFTTAIQ---EWMIDNVVVPVASGYGLAEEY 177 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~g--G~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 177 (222)
+|++++.+++|++++ ...+|+++++.|+|| |+|+|.+...++........ ... +.
T Consensus 159 --~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~----------------dl 220 (241)
T PF00891_consen 159 --ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALF----------------DL 220 (241)
T ss_dssp --ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHH----------------HH
T ss_pred --ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHH----------------HH
Confidence 999999999999965 578899999999999 99999998765544333222 111 12
Q ss_pred HHhHHhHhhcCCHHHHHHHHH
Q 027517 178 QYLKSSIREFLTGKDLEKLAL 198 (222)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~ 198 (222)
.++.......+|.+||+++|+
T Consensus 221 ~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 221 NMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp HHHHHHSSS-EEHHHHHHHHH
T ss_pred HHHHhcCCCCcCHHHHHHHhC
Confidence 222222245678999998874
No 84
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.68 E-value=3.2e-15 Score=108.65 Aligned_cols=101 Identities=24% Similarity=0.299 Sum_probs=80.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--------CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~ 103 (222)
..++.+|||+|||+|.++..+++..++.+.|+++|+++. ... +++.++++|+.+.+ +.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~~~--------~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------DPI--------VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------cCC--------CCcEEEecCCCChHHHHHHHHHhC
Confidence 467889999999999999999998766679999999881 111 47899999998853 45
Q ss_pred CCceeEEEEcccccCcccH-----------HHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYGLRNVVDK-----------RKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.++||+|++..+.+...++ ..+++.+.++|+|||.+++..+..
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 6789999998766554321 468999999999999999865543
No 85
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.67 E-value=6e-15 Score=112.43 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=110.4
Q ss_pred hHHHHHHHHhh-CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 20 RIWKRMAVSWS-GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
..+...++..+ ...+..+|||+|||+|..+..++... ++.+++++|+|+++++.++++....+.. .++.+.++|+.
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~--~~v~~~~~d~~ 175 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLE--HRVEFIQSNLF 175 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchh
Confidence 33444444333 22333699999999999999999885 5679999999999999999987654431 35999999987
Q ss_pred CcCCCCCceeEEEEcccc-------------cCcc------------cHHHHHHHHhcccCCCcEEEEEecCCCCCchhh
Q 027517 99 DLPFSDCFFDAITMGYGL-------------RNVV------------DKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 153 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l-------------~~~~------------~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~ 153 (222)
+. .+..+||+|+++-.. .|-| ....++..+.++|+|||.+++....
T Consensus 176 ~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-------- 246 (284)
T TIGR00536 176 EP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-------- 246 (284)
T ss_pred cc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc--------
Confidence 63 333479999997332 1211 2456788999999999998764211
Q ss_pred HHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHH-HcCCeEEEEeeecCCeeeeEeee
Q 027517 154 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLAL-EIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
.....+.+++. ..||..+++.+...|...+++++
T Consensus 247 ----------------------------------~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 247 ----------------------------------WQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred ----------------------------------cHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 12245667777 46898888888877777766665
No 86
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.66 E-value=3.2e-15 Score=102.16 Aligned_cols=146 Identities=21% Similarity=0.247 Sum_probs=109.7
Q ss_pred HHHHHHHHhhC---CCCC-CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 21 IWKRMAVSWSG---AKTG-DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 21 ~~~~~~~~~~~---~~~~-~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
+...++.+... ..+. .+|||+|||+|.+...|++. +-....+|+|+|+.+++.|+...++.+.+ ..|.+.+.|
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~--n~I~f~q~D 126 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFS--NEIRFQQLD 126 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCC--cceeEEEee
Confidence 33445555443 3333 39999999999999999987 34446999999999999998887665542 349999999
Q ss_pred CCCcCCCCCceeEEEEcccccCc---cc-----HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccccccc
Q 027517 97 ALDLPFSDCFFDAITMGYGLRNV---VD-----KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 168 (222)
Q Consensus 97 ~~~~~~~~~~~D~v~~~~~l~~~---~~-----~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (222)
+.+..+..++||+|.=-..+..+ ++ +...+..+.+.|+|||+++|..-
T Consensus 127 I~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------ 182 (227)
T KOG1271|consen 127 ITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------ 182 (227)
T ss_pred ccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------
Confidence 99876666789999865554443 11 24567888999999999998632
Q ss_pred ccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 169 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.+|.+|+.+.++..||+.....+.+
T Consensus 183 ------------------N~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 183 ------------------NFTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred ------------------CccHHHHHHHHhcCCeEEEEeeccc
Confidence 3578899999999999987766554
No 87
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.66 E-value=2.6e-15 Score=116.75 Aligned_cols=118 Identities=27% Similarity=0.274 Sum_probs=92.8
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....++......++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++.++...+. .++.+.++|+.++
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~l 242 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhcC
Confidence 34455566667788899999999999998776543 56899999999999999988765443 3578899999998
Q ss_pred CCCCCceeEEEEcccccCc--------cc-HHHHHHHHhcccCCCcEEEEEec
Q 027517 101 PFSDCFFDAITMGYGLRNV--------VD-KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~--------~~-~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+.+.++||+|+++..+... .+ ...+++++.++|+|||++++..+
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 8766789999997654321 11 47889999999999999987643
No 88
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.66 E-value=6.1e-15 Score=107.62 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=84.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh---------hhhcCCCeeEEeCCCCCcC
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV---------SKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~d~~~~~ 101 (222)
...++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+....... ......++++.++|+.+++
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 3356679999999999999999964 779999999999999864321100 0001257899999999875
Q ss_pred CC-CCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FS-DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.. .+.||.|+-..++++++ .....++.+.++|+|||++++....
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 32 25799999888888885 3578899999999999975554433
No 89
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.65 E-value=1.2e-15 Score=109.96 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=86.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCceeE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDA 109 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~ 109 (222)
.+..+|||||||+|.++..+++.. +...++++|+++++++.++++....+. .++.++++|+.+++ ++++++|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l---~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL---KNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC---CCEEEEccCHHHHHHhhCCCCceeE
Confidence 345699999999999999999884 678999999999999999888754432 58999999997643 34458999
Q ss_pred EEEcccccCccc--------HHHHHHHHhcccCCCcEEEEEe
Q 027517 110 ITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 110 v~~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|++++...+... ...+++.+.++|||||.+++..
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 999876544332 1578999999999999998865
No 90
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.65 E-value=6.8e-15 Score=110.17 Aligned_cols=132 Identities=26% Similarity=0.335 Sum_probs=93.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.++++....... .++.+..+ +.+||+|++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~--------~~~fD~Vva 185 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGVE--LNVYLPQG--------DLKADVIVA 185 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccC--------CCCcCEEEE
Confidence 56789999999999988876654 33 36999999999999999887543210 12222211 126999998
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
+... .....++.++.++|||||.+++..+... ..++
T Consensus 186 ni~~---~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------------------~~~~ 221 (250)
T PRK00517 186 NILA---NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------------------QADE 221 (250)
T ss_pred cCcH---HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------------------hHHH
Confidence 7542 2346788999999999999998654321 2357
Q ss_pred HHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 193 LEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
+.+.+++.||+++..... +.|..++++|
T Consensus 222 v~~~l~~~Gf~~~~~~~~--~~W~~~~~~~ 249 (250)
T PRK00517 222 VLEAYEEAGFTLDEVLER--GEWVALVGKK 249 (250)
T ss_pred HHHHHHHCCCEEEEEEEe--CCEEEEEEEe
Confidence 789999999999887654 3455555554
No 91
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.65 E-value=1.9e-14 Score=109.37 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=82.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|..+..+++.. ++.+++++|+|+.+++.++++....+.. .++.++++|+.+. .+.++||+|++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~--~~i~~~~~D~~~~-~~~~~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLE--DRVTLIQSDLFAA-LPGRKYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchhhc-cCCCCccEEEE
Confidence 345699999999999999999874 5679999999999999999987654422 4789999998652 34457999999
Q ss_pred cccccC-------------cc------------cHHHHHHHHhcccCCCcEEEEE
Q 027517 113 GYGLRN-------------VV------------DKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~-------------~~------------~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+-.... -+ ....+++.+.+.|+|||++++.
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 743211 11 1256788899999999999763
No 92
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.65 E-value=3.8e-15 Score=115.57 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=89.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
+.+++.+......+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..... ...+...|.... .
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l----~~~~~~~D~~~~--~ 258 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL----EGEVFASNVFSD--I 258 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCEEEEcccccc--c
Confidence 445555554455689999999999999999884 667899999999999999988765432 346677776552 2
Q ss_pred CCceeEEEEcccccCc-----ccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNV-----VDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.++||+|+++..+|+. .....+++++.+.|+|||.++++..
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 4679999999998863 2357889999999999999988643
No 93
>PRK14967 putative methyltransferase; Provisional
Probab=99.64 E-value=3.2e-14 Score=104.87 Aligned_cols=109 Identities=22% Similarity=0.324 Sum_probs=82.9
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
....++.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++....+ .++.++..|+.+. .+.++||+
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~ 104 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDV 104 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeE
Confidence 34567789999999999999988865 2 2489999999999999998775433 2578888888763 34568999
Q ss_pred EEEcccccCccc---------------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 110 ITMGYGLRNVVD---------------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 110 v~~~~~l~~~~~---------------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|+++..+..-.. ...+++++.++|+|||++++....
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 999865432211 355788899999999999876444
No 94
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.63 E-value=1.7e-14 Score=102.09 Aligned_cols=176 Identities=16% Similarity=0.121 Sum_probs=122.8
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCe-eEEeCCCCCcCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~ 102 (222)
..+.+.+.. .+.+|||||||||..+.++++.+ |.....-.|.++..+...+......+. +|+ ..+..|+.+.+.
T Consensus 16 ~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 16 EVLKQYLPD-SGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPPW 90 (204)
T ss_pred HHHHHHhCc-cCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCCC
Confidence 344444432 23269999999999999999998 667889999999887666655443222 233 334556655321
Q ss_pred --------CCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCC
Q 027517 103 --------SDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYG 172 (222)
Q Consensus 103 --------~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (222)
..++||.|++.+++|-.+ ....+++...+.|++||.|++..+....+.+...-...+........
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd----- 165 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD----- 165 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC-----
Confidence 245899999999998775 46789999999999999999988777665544333322221111110
Q ss_pred hhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEe
Q 027517 173 LAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 219 (222)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 219 (222)
......+.+++.++.+++|++..+..+++.....++.
T Consensus 166 ----------p~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvf 202 (204)
T PF06080_consen 166 ----------PEWGIRDIEDVEALAAAHGLELEEDIDMPANNLLLVF 202 (204)
T ss_pred ----------CCcCccCHHHHHHHHHHCCCccCcccccCCCCeEEEE
Confidence 1123568889999999999999999999988776554
No 95
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.63 E-value=2.4e-14 Score=105.50 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=125.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 108 (222)
....+||||.||.|.+........+. ..++...|+|+..++..++..+..+.. .-+.+.++|+.+.. .-....+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~--~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE--DIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc--cceEEEecCCCCHhHhhccCCCCC
Confidence 45669999999999999888887543 258999999999999999988765543 33499999998742 2234579
Q ss_pred EEEEcccccCccc---HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 109 AITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 109 ~v~~~~~l~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
+++.+..++.++| ....+..+.+.+.|||+++.+.-.. .|..+.+...+..+-- ...| .+
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw--HPQle~IAr~LtsHr~---g~~W------------vM 274 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW--HPQLEMIARVLTSHRD---GKAW------------VM 274 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC--CcchHHHHHHHhcccC---CCce------------EE
Confidence 9999999999987 3567899999999999998753111 1111222222211000 0000 13
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
+..|..|+.++++.+||+.+...-...|+|++.+|+|
T Consensus 275 RrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 275 RRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred EecCHHHHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 5679999999999999999999989999999999987
No 96
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.63 E-value=8e-15 Score=107.02 Aligned_cols=114 Identities=20% Similarity=0.368 Sum_probs=93.1
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FS 103 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~ 103 (222)
+..+...+...+|||+|||+|.....++++. +..+++++|+++++.+.|++..+..+.+ .++++++.|+.++. ..
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~--~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLE--ERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcch--hceeEehhhHHHhhhccc
Confidence 3345556667899999999999999999885 3489999999999999999998765554 79999999998864 23
Q ss_pred CCceeEEEEcccccCccc------------------HHHHHHHHhcccCCCcEEEEE
Q 027517 104 DCFFDAITMGYGLRNVVD------------------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~------------------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
..+||+|+||-.+....+ .+.+++...++|||||.+.++
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 356999999887664421 367899999999999999886
No 97
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.62 E-value=1.1e-14 Score=113.40 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=91.6
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFS 103 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~ 103 (222)
+.+.+....+..+||||||+|..+..+++.. |...++|+|+++.+++.+.++....+. .|+.++++|+..+ .++
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL---~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL---KNLLIINYDARLLLELLP 189 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHhhhhCC
Confidence 3444455556799999999999999999995 778999999999999999988765433 5899999998754 356
Q ss_pred CCceeEEEEcccccCcccH------HHHHHHHhcccCCCcEEEEEe
Q 027517 104 DCFFDAITMGYGLRNVVDK------RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~------~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++++|.|++++...+.... ..+++.+.++|+|||.+.+.+
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 7889999997765443222 578999999999999998854
No 98
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.62 E-value=1.1e-15 Score=108.10 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=115.6
Q ss_pred hhHH-HHhhhhc----CcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 4 FSLK-LQLNDLL----SFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 4 ~~~y-d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
|+.| |.|.+.+ .+......++ ++......+..++||+|||||-....+.... .+.+|+|+|+.|++.+.++
T Consensus 91 FD~~Ae~Fd~~LVdkL~Y~vP~~l~e-mI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 91 FDQYAERFDHILVDKLGYSVPELLAE-MIGKADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK 166 (287)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHH-HHHhccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence 4445 5554444 2333333332 3333344457899999999999988887663 3799999999999999887
Q ss_pred hhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHH
Q 027517 79 QDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 156 (222)
Q Consensus 79 ~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~ 156 (222)
--- -...+.++..+. ..+++||+|++..++.++-+...++.-....|+|||.+.++.-..+...- +.
T Consensus 167 g~Y--------D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--f~- 235 (287)
T COG4976 167 GLY--------DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG--FV- 235 (287)
T ss_pred cch--------HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC--ee-
Confidence 311 122333333221 34578999999999999999999999999999999999987555433210 00
Q ss_pred HHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 157 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
..++-..-.+...+..+++..||+++++.+.+
T Consensus 236 -----------------------l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 236 -----------------------LGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred -----------------------cchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 00111223577889999999999999887654
No 99
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.9e-14 Score=104.18 Aligned_cols=114 Identities=24% Similarity=0.309 Sum_probs=99.9
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+....+..|+++|+|.|.|+|.++..|+...++.++++.+|+.++..+.|++++...... +++.+..+|+.+...+
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--DRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc--cceEEEeccccccccc
Confidence 45677788999999999999999999999998888889999999999999999999876443 4589999999886655
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+ .||+|+. .+|++-.+++++++.|+|||.+++..++
T Consensus 162 ~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 162 E-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred c-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 4 7999998 7899999999999999999999875443
No 100
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.2e-14 Score=107.47 Aligned_cols=139 Identities=24% Similarity=0.314 Sum_probs=100.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|-++...++. +. .+++|+|++|-+++.++++...++.. ..+.....+....+ ..++||+|++
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N~v~--~~~~~~~~~~~~~~-~~~~~DvIVA 235 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLNGVE--LLVQAKGFLLLEVP-ENGPFDVIVA 235 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHcCCc--hhhhcccccchhhc-ccCcccEEEe
Confidence 47889999999999999988876 32 37999999999999999988665432 11222222322222 2368999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKD 192 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (222)
|-..+ -...+...+.+.+||||+++++.+... ..+.
T Consensus 236 NILA~---vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------------------q~~~ 271 (300)
T COG2264 236 NILAE---VLVELAPDIKRLLKPGGRLILSGILED-----------------------------------------QAES 271 (300)
T ss_pred hhhHH---HHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------------------HHHH
Confidence 76322 236788899999999999998643321 1357
Q ss_pred HHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 193 LEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 193 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
+.+.+.++||+++++... +-|..+.++|
T Consensus 272 V~~a~~~~gf~v~~~~~~--~eW~~i~~kr 299 (300)
T COG2264 272 VAEAYEQAGFEVVEVLER--EEWVAIVGKR 299 (300)
T ss_pred HHHHHHhCCCeEeEEEec--CCEEEEEEEc
Confidence 788899999999998755 4466776665
No 101
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.62 E-value=5.8e-15 Score=106.61 Aligned_cols=116 Identities=24% Similarity=0.275 Sum_probs=89.2
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
......+++.+...|+.+|||||||+|+.+..+++..++.+.|+++|.++...+.|++++...+. .++.+..+|...
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~---~nv~~~~gdg~~ 134 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI---DNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT---HSEEEEES-GGG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc---CceeEEEcchhh
Confidence 33446677888899999999999999999999999987777899999999999999999987654 489999999876
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
--....+||.|++......+|. .+.+.|++||+|++..-
T Consensus 135 g~~~~apfD~I~v~~a~~~ip~------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIPE------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS--H------HHHHTEEEEEEEEEEES
T ss_pred ccccCCCcCEEEEeeccchHHH------HHHHhcCCCcEEEEEEc
Confidence 3333467999999998875543 36667899999987543
No 102
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.61 E-value=2.3e-14 Score=108.33 Aligned_cols=136 Identities=24% Similarity=0.298 Sum_probs=95.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++.+|||+|||+|-++...++. +. .+|+++|+++.+++.++++...++.. .++.+ ....+ ....+||+|+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~N~~~--~~~~v--~~~~~--~~~~~~dlvv 230 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAELNGVE--DRIEV--SLSED--LVEGKFDLVV 230 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHHTT-T--TCEEE--SCTSC--TCCS-EEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHHcCCC--eeEEE--EEecc--cccccCCEEE
Confidence 356789999999999999988876 33 37999999999999999998776543 34433 22222 2247899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
+|-... -...++..+.+.|+|||+++++.+-.. ..+
T Consensus 231 ANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------------------~~~ 266 (295)
T PF06325_consen 231 ANILAD---VLLELAPDIASLLKPGGYLILSGILEE-----------------------------------------QED 266 (295)
T ss_dssp EES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------------------GHH
T ss_pred ECCCHH---HHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------------------HHH
Confidence 976433 346677889999999999998654321 235
Q ss_pred HHHHHHHHcCCeEEEEeeecCCeeeeEeeeC
Q 027517 192 DLEKLALEIGFSRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~k 222 (222)
++.+.+++ ||++++.... +.|..++++|
T Consensus 267 ~v~~a~~~-g~~~~~~~~~--~~W~~l~~~K 294 (295)
T PF06325_consen 267 EVIEAYKQ-GFELVEEREE--GEWVALVFKK 294 (295)
T ss_dssp HHHHHHHT-TEEEEEEEEE--TTEEEEEEEE
T ss_pred HHHHHHHC-CCEEEEEEEE--CCEEEEEEEe
Confidence 77788876 9999887743 3455666554
No 103
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.3e-14 Score=108.01 Aligned_cols=125 Identities=20% Similarity=0.238 Sum_probs=98.0
Q ss_pred cCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE
Q 027517 14 LSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 93 (222)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (222)
+|.+.-..=.+.+++.+....+.+|||+|||.|.+...+++.. |..+++.+|++..+++.+++++..... .+..+.
T Consensus 138 FS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~~v~ 213 (300)
T COG2813 138 FSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV---ENTEVW 213 (300)
T ss_pred CcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC---CccEEE
Confidence 3444444445677787877777799999999999999999994 688999999999999999999876543 244667
Q ss_pred eCCCCCcCCCCCceeEEEEcccccCccc-----HHHHHHHHhcccCCCcEEEEEec
Q 027517 94 EGDALDLPFSDCFFDAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 94 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..|..+.. . ++||+|+||-.+|.=.+ ..++++...+.|++||.|.|+--
T Consensus 214 ~s~~~~~v-~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 214 ASNLYEPV-E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Eecccccc-c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 77766532 2 38999999999985533 24789999999999999988743
No 104
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.60 E-value=3.6e-14 Score=108.27 Aligned_cols=104 Identities=22% Similarity=0.233 Sum_probs=78.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++....... .++.....+... ...++||+|++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~--~~~~~~~~~~~~--~~~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVS--DRLQVKLIYLEQ--PIEGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCC--cceEEEeccccc--ccCCCceEEEE
Confidence 46789999999999999887764 3 348999999999999999987654322 345556555332 23468999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+...+ ....++.++.+.|+|||++++..+.
T Consensus 232 n~~~~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 232 NILAE---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ecCHH---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 76533 3467889999999999999986543
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=1.2e-13 Score=106.06 Aligned_cols=103 Identities=19% Similarity=0.273 Sum_probs=80.8
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++....+.. .++.++++|+.+. .+.++||+|+++-.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~--~~i~~~~~D~~~~-l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLE--DRVTLIESDLFAA-LPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC--CcEEEEECchhhh-CCCCCccEEEECCC
Confidence 689999999999999999874 6679999999999999999998654422 4699999998652 23457999999743
Q ss_pred cc-------------Cccc------------HHHHHHHHhcccCCCcEEEEE
Q 027517 116 LR-------------NVVD------------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 116 l~-------------~~~~------------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.. +.|. ...+++.+.+.|+|||.+++.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 1111 256789999999999999763
No 106
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.60 E-value=5.1e-15 Score=98.20 Aligned_cols=106 Identities=29% Similarity=0.409 Sum_probs=85.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCceeEEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~v~~ 112 (222)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...... .+++++++|..+.. .+.++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD--DRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT--TTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC--ceEEEEECchhhchhhccCceeEEEEE
Confidence 4589999999999999999883 579999999999999999988765432 57999999998764 56788999999
Q ss_pred cccccCcc--------cHHHHHHHHhcccCCCcEEEEEec
Q 027517 113 GYGLRNVV--------DKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 113 ~~~l~~~~--------~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+-.+.... ....+++++.+.|+|||.+++..+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 88877542 136789999999999999988643
No 107
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.60 E-value=9.3e-14 Score=113.37 Aligned_cols=139 Identities=18% Similarity=0.193 Sum_probs=103.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+.+|||+|||+|..+..+++.+ ++.+++++|+|+.+++.++++....+.. .++.++++|+.+. .+.++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~--~~v~~~~~D~~~~-~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVT--DRIQIIHSNWFEN-IEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCc--cceeeeecchhhh-CcCCCccEEEECC
Confidence 4689999999999999998875 5679999999999999999987654322 4788999997652 2346799999965
Q ss_pred cccCc--------------c------------cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccccccc
Q 027517 115 GLRNV--------------V------------DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVA 168 (222)
Q Consensus 115 ~l~~~--------------~------------~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (222)
..... | ....+++.+.++|+|||.+++. ...
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~---------------------- 271 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF---------------------- 271 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC----------------------
Confidence 43211 1 0245677888999999999763 221
Q ss_pred ccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEe
Q 027517 169 SGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 219 (222)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 219 (222)
-..+.+.+++++.||..+++.....|...+++
T Consensus 272 -------------------~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~ 303 (506)
T PRK01544 272 -------------------KQEEAVTQIFLDHGYNIESVYKDLQGHSRVIL 303 (506)
T ss_pred -------------------chHHHHHHHHHhcCCCceEEEecCCCCceEEE
Confidence 13457788899999998888777777654444
No 108
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.59 E-value=4.9e-14 Score=101.89 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=88.5
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+..+..+...+...++.+|||+|||+|.++..+++. .++.+++++|+++++++.++++....+. .+++++.+|+.+
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~~ 101 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAPE 101 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchHH
Confidence 334445667777778889999999999999998876 3567999999999999999988765432 478999998865
Q ss_pred -cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 -LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 -~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
++.....+|.++... ..+...+++++.+.|+|||.+++...
T Consensus 102 ~~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 102 CLAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 222123357666532 23457889999999999999988754
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=99.58 E-value=7.8e-14 Score=103.34 Aligned_cols=126 Identities=14% Similarity=0.269 Sum_probs=95.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
+..+|||+|||+|..+..+++.. +..+++++|+++.+++.++++. +++.++++|+.+... .++||+|+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~D~~e~~~-~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL--------PEAEWITSDVFEFES-NEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--------cCCEEEECchhhhcc-cCCCcEEEEc
Confidence 45699999999999998888763 3468999999999999998764 478899999988653 3679999999
Q ss_pred ccccCccc--------------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCCh
Q 027517 114 YGLRNVVD--------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 173 (222)
Q Consensus 114 ~~l~~~~~--------------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (222)
..+++.+. ..+.+......|+|+|.+.+.-...+
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-------------------------- 187 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-------------------------- 187 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc--------------------------
Confidence 99887532 13456666778889997766522111
Q ss_pred hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeE
Q 027517 174 AEEYQYLKSSIREFLTGKDLEKLALEIGFSR 204 (222)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 204 (222)
.+..-+++++..++++++||..
T Consensus 188 ---------~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 188 ---------YYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred ---------cccccCCHHHHHHHHHhcCcEe
Confidence 1123468899999999999974
No 110
>PRK00811 spermidine synthase; Provisional
Probab=99.58 E-value=5.8e-14 Score=106.70 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=82.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh--cCCCeeEEeCCCCCc-CCCCCceeE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--CYKNIEWVEGDALDL-PFSDCFFDA 109 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~-~~~~~~~D~ 109 (222)
+++.+||+||||+|..+..+++. ....+|+++|+++.+++.+++.+...... ..++++++.+|+... ....++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 45679999999999999999876 23458999999999999999987543211 126899999998763 334568999
Q ss_pred EEEcccccCccc----HHHHHHHHhcccCCCcEEEEE
Q 027517 110 ITMGYGLRNVVD----KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 110 v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|++...-...+. ...+++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998654332221 256789999999999998764
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=2.9e-14 Score=109.43 Aligned_cols=114 Identities=25% Similarity=0.367 Sum_probs=88.0
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+++.+...++.+|||+|||+|..+..+++..+..+.|+++|+++++++.+++++...+. .++.++++|..+.
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~---~nV~~i~gD~~~~ 143 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI---ENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCChhhc
Confidence 3344556666777888999999999999999998864445799999999999999988765443 4789999998765
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.....+||+|++...+.+.+ ..+.+.|+|||.+++..
T Consensus 144 ~~~~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccccCCccEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 44446799999987665443 34667899999987743
No 112
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.58 E-value=6.5e-14 Score=103.18 Aligned_cols=113 Identities=26% Similarity=0.403 Sum_probs=91.3
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS- 103 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~- 103 (222)
.++..+.+.||++|||.|.|+|.++..+++.+++.++|+.+|+.++..+.|++++...+.. .++.+...|+....+.
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~--~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD--DNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC--TTEEEEES-GGCG--ST
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC--CCceeEecceecccccc
Confidence 5667788999999999999999999999999999999999999999999999998876543 5899999999753332
Q ss_pred --CCceeEEEEcccccCcccHHHHHHHHhccc-CCCcEEEEEec
Q 027517 104 --DCFFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRISVLDF 144 (222)
Q Consensus 104 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l-~~gG~l~i~~~ 144 (222)
+..+|.|++ .+|++-.++..+.+.| ++||++....+
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred cccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 357999998 7788889999999999 89999987543
No 113
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=9.4e-14 Score=111.82 Aligned_cols=119 Identities=23% Similarity=0.373 Sum_probs=94.1
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-- 101 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-- 101 (222)
..+...+...++.+|||+|||+|..+.++++.+++.++++++|+++.+++.+++++...+. .++.+++.|+.+.+
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLEL 318 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccc
Confidence 3444556677889999999999999999999876667999999999999999999876654 47899999988764
Q ss_pred --CCCCceeEEEEcc------cccCccc----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 --FSDCFFDAITMGY------GLRNVVD----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 --~~~~~~D~v~~~~------~l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
...++||.|++.. ++.+.++ ...++.++.+.|||||+++..+.+
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3346799999742 3333333 367899999999999999876544
No 114
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.57 E-value=7.1e-14 Score=102.34 Aligned_cols=111 Identities=21% Similarity=0.156 Sum_probs=86.3
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
....+.+.+...++.+|||+|||+|..+..+++.. .+++++|+++++++.+++++...+. .++++..+|..+..
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~ 139 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL---HNVSVRHGDGWKGW 139 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC---CceEEEECCcccCC
Confidence 33455666777888999999999999998777663 3899999999999999988765432 46899999976532
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+.++||+|++...+++++ +.+.+.|+|||.+++...
T Consensus 140 ~~~~~fD~I~~~~~~~~~~------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEIP------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhhh------HHHHHhcCCCcEEEEEEc
Confidence 2346799999988766553 457789999999987654
No 115
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.57 E-value=8.9e-14 Score=101.26 Aligned_cols=95 Identities=21% Similarity=0.198 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
...++||||+|.|..+..++..+ .+|++.|.|+.|....+++ +.+++.. .+....+.+||+|.|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k----------g~~vl~~--~~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK----------GFTVLDI--DDWQQTDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC----------CCeEEeh--hhhhccCCceEEEeeh
Confidence 35689999999999999999875 3799999999998776665 3343322 2232234579999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++|..-.+|..+|+.+++.|+|+|++++.-
T Consensus 159 NvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 NVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999999999999999999988753
No 116
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=7.6e-14 Score=98.98 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=92.7
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.....+.+.+...++.+|||||||+|..+..+++.. .+|+.+|..++..+.|++++...+. .|+.+.++|...=
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~---~nV~v~~gDG~~G 132 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY---ENVTVRHGDGSKG 132 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC---CceEEEECCcccC
Confidence 344567788888999999999999999999999884 3999999999999999999877664 5799999998762
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
=.+..+||.|+.......+|+. +.+-|++||++++..-
T Consensus 133 ~~~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 133 WPEEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 1234689999999988877753 6667899999988654
No 117
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.56 E-value=1.3e-14 Score=103.26 Aligned_cols=148 Identities=18% Similarity=0.079 Sum_probs=100.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
...+.||+|||-|+.+..++-.+ -.+|..+|..+..++.|++.+.... ..-.++++..+.++..+..+||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEeh
Confidence 35699999999999998776432 3489999999999999998765421 123578888888876555789999999
Q ss_pred ccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 114 YGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 114 ~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
.++.|+.| ...+|+++++.|+|+|.+++-+-....... .... ....-..+.+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~-----------~~D~---------------~DsSvTRs~~ 183 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD-----------EFDE---------------EDSSVTRSDE 183 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE-----------EEET---------------TTTEEEEEHH
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc-----------ccCC---------------ccCeeecCHH
Confidence 99999965 678899999999999999986644433210 0000 0011234778
Q ss_pred HHHHHHHHcCCeEEEEeeecC
Q 027517 192 DLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.+.+++++||+++++.....+
T Consensus 184 ~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 184 HFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp HHHHHHHHCT-EEEEEEE-TT
T ss_pred HHHHHHHHcCCEEEEeccccC
Confidence 999999999999998776543
No 118
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.55 E-value=9.5e-13 Score=98.38 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=82.6
Q ss_pred HHHHHHHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 21 IWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
.+.+.++..... .+..+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++.... ++.++++|+.+
T Consensus 72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~ 144 (251)
T TIGR03704 72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYD 144 (251)
T ss_pred HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechh
Confidence 333444444332 234589999999999999998874 5568999999999999999887542 35788888865
Q ss_pred c-CC-CCCceeEEEEcccccCcc----------------------c----HHHHHHHHhcccCCCcEEEEE
Q 027517 100 L-PF-SDCFFDAITMGYGLRNVV----------------------D----KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 100 ~-~~-~~~~~D~v~~~~~l~~~~----------------------~----~~~~l~~~~~~l~~gG~l~i~ 142 (222)
. +. ..++||+|+++-...... + ...+++...++|+|||++++.
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 21 125799999987643210 0 246777888999999999875
No 119
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.1e-12 Score=99.32 Aligned_cols=137 Identities=22% Similarity=0.295 Sum_probs=104.0
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 116 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 116 (222)
+|||+|||+|..+..+++.. +..+|+++|+|+++++.|+++....+. .++.++.+|+.+- .. ++||+|++|-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~-~~-~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEP-LR-GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeecccc-cC-CceeEEEeCCCC
Confidence 79999999999999999985 667999999999999999999876543 3566666676552 22 489999998763
Q ss_pred cCcc-----------c--------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccC
Q 027517 117 RNVV-----------D--------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGY 171 (222)
Q Consensus 117 ~~~~-----------~--------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (222)
-.-+ + ..+++.++.+.|+|||.+++.. .
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~-g-------------------------- 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI-G-------------------------- 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE-C--------------------------
Confidence 3222 1 2467888888999988886632 1
Q ss_pred ChhHHHHHhHHhHhhcCCHHHHHHHHHHcC-CeEEEEeeecCCeeeeEeee
Q 027517 172 GLAEEYQYLKSSIREFLTGKDLEKLALEIG-FSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~~~~~~~~ 221 (222)
.-..+.+.+++++.| |..+...+...+...++.++
T Consensus 240 ---------------~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 240 ---------------LTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred ---------------CCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 113468899999999 78888888888776666554
No 120
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.54 E-value=2.2e-13 Score=109.28 Aligned_cols=129 Identities=19% Similarity=0.326 Sum_probs=97.0
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS 103 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~ 103 (222)
.+...+...++.+|||+|||+|..+.++++.++++++++++|+++.+++.+++++.+.+. .++.+.+.|+..++ ..
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTEYV 304 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhhhh
Confidence 344456677889999999999999999999876677999999999999999999876543 46889999988765 33
Q ss_pred CCceeEEEEcccc------cCccc----------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHH
Q 027517 104 DCFFDAITMGYGL------RNVVD----------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 156 (222)
Q Consensus 104 ~~~~D~v~~~~~l------~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~ 156 (222)
.++||.|++.... ..-++ ..+++.++.+.|||||.++.++.+.........+.
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~ 379 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVK 379 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHH
Confidence 5679999973332 21121 25679999999999999988776654333333333
No 121
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.54 E-value=2.5e-13 Score=102.38 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=90.3
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCce
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 107 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (222)
..+...++.+|||+|||+|..+..+++.+++.+.++++|+++.+++.+++++...+. .++.+...|...++...++|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhhhhccCC
Confidence 445667888999999999999999998876667999999999999999999876543 47889999987765444569
Q ss_pred eEEEEccccc------Cccc----------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 108 DAITMGYGLR------NVVD----------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 108 D~v~~~~~l~------~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|.|++..... .-++ ...+|+...+.|||||+++..+-+.
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999743322 1111 2458999999999999998765543
No 122
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.53 E-value=3.3e-13 Score=108.51 Aligned_cols=121 Identities=19% Similarity=0.308 Sum_probs=91.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF- 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~- 102 (222)
..+...+...++.+|||+|||+|..+.++++.++ .++++++|+++++++.+++++...+.. ..+.+..+|....+.
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecccccccccc
Confidence 3455566777889999999999999999998864 679999999999999999998765432 123446667655433
Q ss_pred -CCCceeEEEEc------ccccCccc----------------HHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 103 -SDCFFDAITMG------YGLRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 103 -~~~~~D~v~~~------~~l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+.++||.|++. +++++.++ ...+|.++.+.|||||.++.++.+-.
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 35679999963 33444444 36789999999999999998776653
No 123
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.52 E-value=5.3e-13 Score=107.82 Aligned_cols=118 Identities=24% Similarity=0.329 Sum_probs=91.3
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
....+...++.+|||+|||+|..+..+++.++..++++++|+++.+++.+++++...+. .++.+.+.|+.+.+ +..
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~-~~~ 317 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS-PEE 317 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc-cCC
Confidence 34455667888999999999999999998776567999999999999999998876543 47899999988764 346
Q ss_pred ceeEEEEccc------ccCcc----------------cHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 106 FFDAITMGYG------LRNVV----------------DKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 106 ~~D~v~~~~~------l~~~~----------------~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+||.|++... +...+ ....++.++.+.|||||+++..+.+..
T Consensus 318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 7999996321 11111 124689999999999999998776553
No 124
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.51 E-value=1.2e-12 Score=92.31 Aligned_cols=131 Identities=21% Similarity=0.285 Sum_probs=83.9
Q ss_pred HHHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 26 AVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 26 ~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
+.+++.. ++...|.|+|||.+.++..+. .+..|..+|+-+ .+-.++..|+..+|.++
T Consensus 63 iI~~l~~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva------------------~n~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 63 IIEWLKKRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA------------------PNPRVTACDIANVPLED 120 (219)
T ss_dssp HHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-------------------SSTTEEES-TTS-S--T
T ss_pred HHHHHHhcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC------------------CCCCEEEecCccCcCCC
Confidence 4444443 345689999999999986544 345899999854 23457779999999999
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
++.|+++++.+|-- .+....+++..|+|||||.|.|.+...
T Consensus 121 ~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S-------------------------------------- 161 (219)
T PF05148_consen 121 ESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS-------------------------------------- 161 (219)
T ss_dssp T-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG--------------------------------------
T ss_pred CceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc--------------------------------------
Confidence 99999998877643 467889999999999999999987553
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEe
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 219 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 219 (222)
++-+.+++.+.++..||+..... ..+..+..+.
T Consensus 162 -Rf~~~~~F~~~~~~~GF~~~~~d-~~n~~F~~f~ 194 (219)
T PF05148_consen 162 -RFENVKQFIKALKKLGFKLKSKD-ESNKHFVLFE 194 (219)
T ss_dssp -G-S-HHHHHHHHHCTTEEEEEEE---STTEEEEE
T ss_pred -cCcCHHHHHHHHHHCCCeEEecc-cCCCeEEEEE
Confidence 33466788999999999998854 4445554443
No 125
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.51 E-value=3.6e-13 Score=95.04 Aligned_cols=111 Identities=24% Similarity=0.290 Sum_probs=83.0
Q ss_pred HHHHHHhhCCCC--CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC-C
Q 027517 23 KRMAVSWSGAKT--GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-D 99 (222)
Q Consensus 23 ~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~ 99 (222)
....++++..++ ..-|||||||+|-....+.+ ++..++|+|+|+.|++.|.++-- .-.++.+|+- .
T Consensus 37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~e~--------egdlil~DMG~G 105 (270)
T KOG1541|consen 37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVEREL--------EGDLILCDMGEG 105 (270)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHHhhh--------hcCeeeeecCCC
Confidence 344555555444 67899999999999988874 46789999999999999997421 1245666664 4
Q ss_pred cCCCCCceeEEEEcccccCcc-------c----HHHHHHHHhcccCCCcEEEEEec
Q 027517 100 LPFSDCFFDAITMGYGLRNVV-------D----KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~-------~----~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+|+.+++||.+++..++.++- + ...++..++..|++|++.++..+
T Consensus 106 lpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 106 LPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 788889999999877766551 1 24567889999999999987543
No 126
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.51 E-value=9.4e-13 Score=94.59 Aligned_cols=100 Identities=30% Similarity=0.391 Sum_probs=75.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--------C
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------F 102 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~ 102 (222)
...++.+|||+|||+|.++..+++...+..+++++|+++.+ .. +++.+++.|+.+.+ .
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~--------~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI--------ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC--------CCceEEEeeCCChhHHHHHHHHh
Confidence 45778899999999999999998886555689999999854 11 46788888887632 3
Q ss_pred CCCceeEEEEccccc--------Cc---ccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLR--------NV---VDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~--------~~---~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+.++||+|++..+.+ +. .....+++.+.+.|+|||++++..+
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 456799999865421 11 1136789999999999999988643
No 127
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=6e-13 Score=95.22 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=74.3
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh---------------------------
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--------------------------- 85 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--------------------------- 85 (222)
..+..+|||||..|..+..+++.+++. .+.|+||++..++.|++.......-
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 346689999999999999999998553 7999999999999999876532100
Q ss_pred ------------cCCCeeEEeCCCCCcCCCCCceeEEEEccccc--Cc----ccHHHHHHHHhcccCCCcEEEE
Q 027517 86 ------------CYKNIEWVEGDALDLPFSDCFFDAITMGYGLR--NV----VDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 86 ------------~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~--~~----~~~~~~l~~~~~~l~~gG~l~i 141 (222)
...|..+...|+. ......||+|+|..+=- |+ ....++++++.+.|.|||+|++
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 0011111111122 12346799999855411 22 3478899999999999999976
No 128
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=1.2e-12 Score=105.17 Aligned_cols=116 Identities=22% Similarity=0.359 Sum_probs=88.9
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--C
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--F 102 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~ 102 (222)
.+...+...++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++....+ .++.++++|+.+.+ .
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccchhhc
Confidence 34456667788999999999999999999885 34699999999999999999886654 24688899987653 2
Q ss_pred CCCceeEEEEccccc------Cccc----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLR------NVVD----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~------~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+.++||.|++..... +-++ ...+++.+.+.|||||+++..+.+
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 346799999644321 1111 246899999999999999887654
No 129
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.49 E-value=1.6e-12 Score=94.60 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=87.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh---------hhhhhcCCCeeEEeCCCCCcCC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD---------LVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
..++.+||..|||.|..+..|++. +.+|+|+|+|+.+++.+.+... ........++++.++|+.+++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 345679999999999999999965 6799999999999999755210 0000111478999999999753
Q ss_pred C---CCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 S---DCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~---~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
. .++||+|+=...+++++. ..+..+.+.++|+|||.+++..+.
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 2 257999999888998853 578899999999999998887654
No 130
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.49 E-value=4.3e-13 Score=86.61 Aligned_cols=101 Identities=36% Similarity=0.534 Sum_probs=82.5
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEEEEccc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGYG 115 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~ 115 (222)
+|+|+|||.|..+..+++. ...+++++|+++..++.+++..... ...++.+...|..+... ..+++|+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 5899999999999988872 4569999999999999888432211 12578899999887653 4567999999999
Q ss_pred ccC-cccHHHHHHHHhcccCCCcEEEEE
Q 027517 116 LRN-VVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 116 l~~-~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+++ ......+++.+.+.++|||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 998 677889999999999999999875
No 131
>PRK04457 spermidine synthase; Provisional
Probab=99.48 E-value=6.3e-13 Score=99.90 Aligned_cols=111 Identities=12% Similarity=0.186 Sum_probs=85.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~ 111 (222)
+++.+|||||||+|.++..+++.. +..+++++|+++++++.+++.+..... .++++++.+|+.+. ....++||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~--~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN--GERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC--CCceEEEECCHHHHHHhCCCCCCEEE
Confidence 456799999999999999998885 677999999999999999988643221 25899999998663 22235799999
Q ss_pred Ecccc-cCcc---cHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 112 MGYGL-RNVV---DKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 112 ~~~~l-~~~~---~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+...- ...+ ....+++.+++.|+|||++++..+..
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 85321 1122 13689999999999999998865544
No 132
>PRK01581 speE spermidine synthase; Validated
Probab=99.48 E-value=5e-12 Score=97.34 Aligned_cols=153 Identities=11% Similarity=0.028 Sum_probs=102.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcch--hhhh--hhcCCCeeEEeCCCCCc-CCCCCc
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ--DLVS--KACYKNIEWVEGDALDL-PFSDCF 106 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~~--~~~~~~i~~~~~d~~~~-~~~~~~ 106 (222)
.....+||++|||+|..+..+++. ++..+++++|+++++++.|++.. .... ....++++++.+|+.+. ....++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 345669999999999998888876 34568999999999999999631 1100 00126899999998873 334567
Q ss_pred eeEEEEcccccC---ccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhH
Q 027517 107 FDAITMGYGLRN---VVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLK 181 (222)
Q Consensus 107 ~D~v~~~~~l~~---~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (222)
||+|++...-.. ... ...+++.+++.|+|||.+++..-.. ... ...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp----~~~--~~~----------------------- 277 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP----ADA--PLV----------------------- 277 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh----hhh--HHH-----------------------
Confidence 999998743111 111 2568999999999999987752111 000 000
Q ss_pred HhHhhcCCHHHHHHHHHHcCCeEEEEeee---cCCeeeeEeeeC
Q 027517 182 SSIREFLTGKDLEKLALEIGFSRAKHYEL---SGGLMGNLVATR 222 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~---~~~~~~~~~~~k 222 (222)
...+.+.++++|+.+...... .++.|+..+|+|
T Consensus 278 --------~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 278 --------YWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred --------HHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence 013568888999988765554 234477777764
No 133
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.48 E-value=1.9e-12 Score=94.32 Aligned_cols=145 Identities=25% Similarity=0.280 Sum_probs=100.3
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh---------hhhhcCCCeeEEeCCCCCc
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL---------VSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~d~~~~ 100 (222)
+...++.+||..|||.|..+..|+++ +.+|+|+|+|+.+++.+.+.... .......+|++.++|+.++
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 55677789999999999999999976 67999999999999998322111 0001124789999999987
Q ss_pred CCCC-CceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCch-hhHHHHHHhhcccccccccCChhHH
Q 027517 101 PFSD-CFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPF-TTAIQEWMIDNVVVPVASGYGLAEE 176 (222)
Q Consensus 101 ~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (222)
+... ++||+|+=...++.++ ...+..+.+.++|+|||.+++.....+.... ..+
T Consensus 110 ~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP---------------------- 167 (218)
T PF05724_consen 110 PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP---------------------- 167 (218)
T ss_dssp GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----------------------
T ss_pred ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC----------------------
Confidence 6432 4799999887787774 4688899999999999995554443322110 000
Q ss_pred HHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEee
Q 027517 177 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
...+.+++.+++. .+|++.....
T Consensus 168 ---------f~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 168 ---------FSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp -------------HHHHHHHHT-TTEEEEEEEE
T ss_pred ---------CCCCHHHHHHHhc-CCcEEEEEec
Confidence 1247789999998 8898876554
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=1.8e-12 Score=104.93 Aligned_cols=117 Identities=26% Similarity=0.336 Sum_probs=90.5
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--C
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--F 102 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~ 102 (222)
.+...+...++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+. .++.++++|+.+.. +
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccchh
Confidence 444556667888999999999999999998875667999999999999999998866543 36899999987753 2
Q ss_pred CCCceeEEEEccccc------Cccc----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLR------NVVD----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~------~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+ ++||+|++..... +.|+ ...+++.+.+.|||||.++..+..
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 6799999754321 1111 245799999999999999876544
No 135
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.47 E-value=6.5e-13 Score=98.25 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=89.4
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C---
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P--- 101 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--- 101 (222)
+..+....+..+|||+|||+|..+..++...++.++++++|+++++++.|++++...+.. .+++++.+|+.+. +
T Consensus 60 L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~--~~i~~~~gda~~~L~~l~ 137 (234)
T PLN02781 60 LSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD--HKINFIQSDALSALDQLL 137 (234)
T ss_pred HHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHH
Confidence 333445567789999999999999999887766779999999999999999998776543 5799999998763 1
Q ss_pred --CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 --FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 --~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+.++||+|++... -+.....+..+.+.|+|||.+++..
T Consensus 138 ~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 12357999998542 2345678899999999999988754
No 136
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.46 E-value=6.6e-13 Score=102.39 Aligned_cols=110 Identities=23% Similarity=0.351 Sum_probs=78.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh-------cCCCeeEEeCCCCCc----CC
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA-------CYKNIEWVEGDALDL----PF 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~d~~~~----~~ 102 (222)
++.+|||+|||-|+.+.-+... .-..++|+|+++..++.|+++....... ..-...++..|.... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 6789999999998888777665 3458999999999999999998322110 012356778887642 12
Q ss_pred CC--CceeEEEEcccccCc-c---cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SD--CFFDAITMGYGLRNV-V---DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~--~~~D~v~~~~~l~~~-~---~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++ .+||+|.|.+++|+. . ....+|+++.+.|+|||+++.+.+.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 22 589999999999988 2 2466899999999999999988765
No 137
>PRK03612 spermidine synthase; Provisional
Probab=99.44 E-value=1.6e-12 Score=106.72 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=81.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc--hhhhhh--hcCCCeeEEeCCCCCc-CCCCCce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSK--ACYKNIEWVEGDALDL-PFSDCFF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~~~~--~~~~~i~~~~~d~~~~-~~~~~~~ 107 (222)
+++++|||+|||+|..+..+++. ++..+++++|+++++++.++++ +..... -..++++++.+|..+. ...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999998875 3336999999999999999984 221110 0126899999998763 2234689
Q ss_pred eEEEEcccccCccc-----HHHHHHHHhcccCCCcEEEEEe
Q 027517 108 DAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 108 D~v~~~~~l~~~~~-----~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|+|++.......+. ...+++.+++.|+|||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99999765433222 1458899999999999998753
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.44 E-value=1.4e-12 Score=92.06 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=80.8
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.+.+.+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++.... .+++++.+|+.+++.+.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~-----~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAA-----DNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccC-----CCEEEEECchhcCCccc
Confidence 4556666677889999999999999999976 358999999999999999886431 58999999999987766
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcc--cCCCcEEEEE
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRV--LKPGSRISVL 142 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~--l~~gG~l~i~ 142 (222)
.+||.|+++..++.. ...+..+.+. +.++|.+++.
T Consensus 76 ~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 76 LQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 679999998766532 2333333332 3467777664
No 139
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.44 E-value=7.1e-12 Score=90.65 Aligned_cols=129 Identities=18% Similarity=0.254 Sum_probs=96.4
Q ss_pred HHhhCC-CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 27 VSWSGA-KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 27 ~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
.+.+.. +....|.|+|||.+.++. . ....|+.+|+-+ .+-.++.+|+.++|.+++
T Consensus 172 i~~ik~r~~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~a------------------~~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 172 IRKIKRRPKNIVIADFGCGEAKIAS---S---ERHKVHSFDLVA------------------VNERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHhCcCceEEEecccchhhhhh---c---cccceeeeeeec------------------CCCceeeccccCCcCccC
Confidence 333433 345578899999998876 1 234799999744 355678899999999999
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHh
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIR 185 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (222)
+.|+++++.+|- -.+...+++++.++|++||.++|.+...
T Consensus 228 svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~S--------------------------------------- 267 (325)
T KOG3045|consen 228 SVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKS--------------------------------------- 267 (325)
T ss_pred cccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhh---------------------------------------
Confidence 999999877653 2577889999999999999999987553
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEee
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVA 220 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 220 (222)
++-+...+.+.+...||.+.... .....|.++.-
T Consensus 268 Rf~dv~~f~r~l~~lGF~~~~~d-~~n~~F~lfef 301 (325)
T KOG3045|consen 268 RFSDVKGFVRALTKLGFDVKHKD-VSNKYFTLFEF 301 (325)
T ss_pred hcccHHHHHHHHHHcCCeeeehh-hhcceEEEEEE
Confidence 34466778899999999886644 44555555543
No 140
>PLN02366 spermidine synthase
Probab=99.42 E-value=1.3e-11 Score=94.38 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=82.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCc-C-CCCCcee
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-P-FSDCFFD 108 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~-~-~~~~~~D 108 (222)
.+++.+||+||||.|..+..+++. ++..+++.+|+++.+++.+++.+..... ...++++++.+|+... . .+.++||
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 355779999999999999999876 3445899999999999999998753211 1126899999997653 1 2246799
Q ss_pred EEEEcccccCccc----HHHHHHHHhcccCCCcEEEEE
Q 027517 109 AITMGYGLRNVVD----KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 109 ~v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|++...-...+. ...+++.+++.|+|||.++..
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9998654332221 256899999999999999764
No 141
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.42 E-value=7e-12 Score=94.96 Aligned_cols=109 Identities=12% Similarity=0.064 Sum_probs=80.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCc-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~-~~~~~~~D~v 110 (222)
+.+.+||++|||+|..+..+++.. +..+++++|+++++++.+++.+..... ...+++++...|.... ....++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345599999999999998888763 345899999999999999987643221 1125788888887552 2224689999
Q ss_pred EEcccccCcc--c--HHHHHHHHhcccCCCcEEEEE
Q 027517 111 TMGYGLRNVV--D--KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 111 ~~~~~l~~~~--~--~~~~l~~~~~~l~~gG~l~i~ 142 (222)
++......-+ . ...+++.+++.|+|||.+++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9866532222 1 367889999999999999875
No 142
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.41 E-value=2.9e-12 Score=91.82 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=75.9
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGL 116 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l 116 (222)
.++|+|||+|..+..++..+ .+|+++|+|+.|++.+++......- .....+...+..++.-.+++.|+|++...+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccc--cCCccccccccccccCCCcceeeehhhhhH
Confidence 88999999998888888774 3899999999999999887522110 011122222333333346899999999999
Q ss_pred cCcccHHHHHHHHhcccCCCc-EEEEEecCC
Q 027517 117 RNVVDKRKALEESFRVLKPGS-RISVLDFNK 146 (222)
Q Consensus 117 ~~~~~~~~~l~~~~~~l~~gG-~l~i~~~~~ 146 (222)
|++. .+++++.++++||++| .+.+..+..
T Consensus 111 HWFd-le~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 111 HWFD-LERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred Hhhc-hHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 8884 5889999999998876 777766654
No 143
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.38 E-value=1.9e-11 Score=92.73 Aligned_cols=154 Identities=21% Similarity=0.163 Sum_probs=107.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
-...+|+|+|.|..+..+...+ + ++.+++++...+..+..... +.|+.+-+|..+. .|. -|+|++..
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P~--~daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TPK--GDAIWMKW 244 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CCC--cCeEEEEe
Confidence 4689999999999999999865 4 57777777776666665542 2478888888775 443 47999999
Q ss_pred cccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHH-HHHHhhcccccccccCChhHHHHHhHHhHhhcCCHH
Q 027517 115 GLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAI-QEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGK 191 (222)
Q Consensus 115 ~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (222)
++||+.| ..++|+++++.|+|||.+++.+...++....... ..+.. ..+...........-.+..
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~------------~~d~lm~~~~~~Gkert~~ 312 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTR------------DMDLLMLTQTSGGKERTLK 312 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceee------------hhHHHHHHHhccceeccHH
Confidence 9999965 6899999999999999999999866542211110 00000 0000111111112346899
Q ss_pred HHHHHHHHcCCeEEEEeeecCC
Q 027517 192 DLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 192 ~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
|++.++.++||.+..+......
T Consensus 313 e~q~l~~~~gF~~~~~~~~~~~ 334 (342)
T KOG3178|consen 313 EFQALLPEEGFPVCMVALTAYS 334 (342)
T ss_pred HHHhcchhhcCceeEEEeccCc
Confidence 9999999999999887755443
No 144
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.38 E-value=6.6e-13 Score=94.32 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=110.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
....++|||||-|....++... .-.+++.+|.|..|++.++..-. ++ -.+...++|-+.+++.+.++|+|+++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~qd---p~--i~~~~~v~DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQD---PS--IETSYFVGDEEFLDFKENSVDLIISS 144 (325)
T ss_pred hCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccCC---Cc--eEEEEEecchhcccccccchhhhhhh
Confidence 3458999999999999999876 24589999999999999886531 10 23566788988889888999999999
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHH
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 193 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (222)
.++|+..+.+..+.+++..|||+|.++-.-+..+............. .+.-.-+.+++..+-...++
T Consensus 145 lslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAe-------------lER~GGiSphiSPf~qvrDi 211 (325)
T KOG2940|consen 145 LSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAE-------------LEREGGISPHISPFTQVRDI 211 (325)
T ss_pred hhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHH-------------HHhccCCCCCcChhhhhhhh
Confidence 99999999999999999999999998765444433211111111100 00001112233344566889
Q ss_pred HHHHHHcCCeEEEEe
Q 027517 194 EKLALEIGFSRAKHY 208 (222)
Q Consensus 194 ~~~l~~~Gf~~~~~~ 208 (222)
..+|..+||....+.
T Consensus 212 G~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 212 GNLLTRAGFSMLTVD 226 (325)
T ss_pred hhHHhhcCcccceec
Confidence 999999999876543
No 145
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.36 E-value=3.6e-12 Score=91.90 Aligned_cols=110 Identities=21% Similarity=0.315 Sum_probs=87.8
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-----C
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-----F 102 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-----~ 102 (222)
+....+.++|||||+++|..+..+++.++++++++.+|++++..+.|++.+...+.. .+++++.+|+.+. + .
T Consensus 40 l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~--~~I~~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 40 LVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD--DRIEVIEGDALEVLPELANDG 117 (205)
T ss_dssp HHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG--GGEEEEES-HHHHHHHHHHTT
T ss_pred HHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC--CcEEEEEeccHhhHHHHHhcc
Confidence 334456679999999999999999998877889999999999999999988776544 5899999998763 1 1
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+.++||+|+.-.. -.+....++.+.+.|+|||.+++-.
T Consensus 118 ~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 118 EEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp TTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred CCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEEEcc
Confidence 1357999998663 3456778888999999999998754
No 146
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.36 E-value=6.2e-12 Score=90.66 Aligned_cols=117 Identities=18% Similarity=0.269 Sum_probs=93.5
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCc-C-
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDL-P- 101 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~-~- 101 (222)
.+..+....+.++|||||.+.|..+..++..++..++++.+|++++..+.|+++++..+.. +++..+. +|..+. .
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~--~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD--DRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEEecCcHHHHHHh
Confidence 3444455667889999999999999999999865779999999999999999999887665 5688888 577653 2
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
...++||+|+.-. .-.+.+..++.+.+.|+|||.+++-....
T Consensus 128 ~~~~~fDliFIDa---dK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 128 LLDGSFDLVFIDA---DKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred ccCCCccEEEEeC---ChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 3468899999854 23456788999999999999998755443
No 147
>PLN02672 methionine S-methyltransferase
Probab=99.36 E-value=2.9e-11 Score=105.06 Aligned_cols=106 Identities=24% Similarity=0.251 Sum_probs=79.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-------------hcCCCeeEEeCCCCCcC
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-------------ACYKNIEWVEGDALDLP 101 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~d~~~~~ 101 (222)
+.+|||+|||+|..+..+++.. +..+++++|+|+++++.|+++...... ....++.++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4589999999999999999885 556999999999999999998865321 11247999999987743
Q ss_pred CC-CCceeEEEEcccccCcc----------------------------------c----HHHHHHHHhcccCCCcEEEE
Q 027517 102 FS-DCFFDAITMGYGLRNVV----------------------------------D----KRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 102 ~~-~~~~D~v~~~~~l~~~~----------------------------------~----~~~~l~~~~~~l~~gG~l~i 141 (222)
.. ..+||+|++|-..-.-. + ..+++.+..++|+|||.+++
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 22 23699999876521100 0 25677788889999998865
No 148
>PLN02476 O-methyltransferase
Probab=99.34 E-value=2.2e-11 Score=91.21 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=90.9
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-C-
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F- 102 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~- 102 (222)
+..+....+.++|||+|+++|..+..++..++++++++.+|.+++..+.|+++++..+.. ++++++.+|+.+. + +
T Consensus 110 L~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~--~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS--HKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHH
Confidence 333445566789999999999999999988776778999999999999999999876654 6899999998763 2 1
Q ss_pred ---CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 ---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..++||+|+.-.. -.+....++.+.+.|+|||.+++-..
T Consensus 188 ~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred hcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 1357999998653 24567788899999999999987543
No 149
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.33 E-value=9.3e-12 Score=92.79 Aligned_cols=112 Identities=25% Similarity=0.397 Sum_probs=85.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh---cCCCeeEEeCCCCC------cCC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA---CYKNIEWVEGDALD------LPF 102 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~d~~~------~~~ 102 (222)
.+++..++++|||-|+.++..-+. .-..++|+|+++-.++.|+++......- ..-.+.++.+|... +++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 356788999999999988877665 2458999999999999999987543211 11236788888765 234
Q ss_pred CCCceeEEEEcccccCc----ccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
++.+||+|-|.+++|+- .....+|+++.+.|+|||.++-+.+.
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 45559999999999865 33577899999999999999766544
No 150
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.33 E-value=1.6e-11 Score=88.21 Aligned_cols=103 Identities=25% Similarity=0.416 Sum_probs=80.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C--CCCCceeEEEE
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P--FSDCFFDAITM 112 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~~D~v~~ 112 (222)
..+||||||.|.++..+++. .|+..++|+|++...+..+..+....+. .|+.++++|+..+ . ++++++|.|+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l---~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGL---KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTT---SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcc---cceEEEEccHHHHHhhcccCCchheEEE
Confidence 38999999999999999999 4888999999999999999888766543 6999999999872 2 45578999999
Q ss_pred cccccCccc--------HHHHHHHHhcccCCCcEEEEE
Q 027517 113 GYGLRNVVD--------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
++.--+... ...+++.+.++|+|||.+.+.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 877554422 267899999999999999875
No 151
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.32 E-value=6.2e-11 Score=95.95 Aligned_cols=114 Identities=19% Similarity=0.322 Sum_probs=85.0
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+.+...+++++...++.+|||+|||+|.++..+++. ..+++++|+|+++++.+++++...+. .++.+.++|+.+
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~---~~v~~~~~d~~~ 356 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGL---DNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEeChHH
Confidence 344455666666677889999999999999999876 25899999999999999988765443 479999999865
Q ss_pred c----CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 100 L----PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 100 ~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
. ++.+++||+|+++-.-.- ....++.+.+ ++|++.+++++
T Consensus 357 ~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 2 233457999998665332 2344555554 68888888865
No 152
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.32 E-value=1.7e-11 Score=87.49 Aligned_cols=150 Identities=25% Similarity=0.273 Sum_probs=106.1
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDC 105 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~ 105 (222)
..+.+.+.+|||.+.|-|.++...+++ ++ +|+.++.++..++.|.-+.=...... .++.++.+|+.++ .+++.
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~-~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFE-IAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccc-cccEEecccHHHHHhcCCcc
Confidence 345566899999999999999988876 45 89999999999998887643322211 3689999999874 46788
Q ss_pred ceeEEEEcccc-cCcc--cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHH
Q 027517 106 FFDAITMGYGL-RNVV--DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKS 182 (222)
Q Consensus 106 ~~D~v~~~~~l-~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (222)
+||+|+---.= .+-. --..+.++++++|||||.++--.-.+... +
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r-y------------------------------- 252 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR-Y------------------------------- 252 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc-c-------------------------------
Confidence 89999852221 0111 13678999999999999997543322110 0
Q ss_pred hHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeee
Q 027517 183 SIREFLTGKDLEKLALEIGFSRAKHYELSGGLMG 216 (222)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 216 (222)
...--+..+.+.|+++||++++......|+++
T Consensus 253 --rG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~A 284 (287)
T COG2521 253 --RGLDLPKGVAERLRRVGFEVVKKVREALGVVA 284 (287)
T ss_pred --ccCChhHHHHHHHHhcCceeeeeehhccceEE
Confidence 01113468889999999999988766665543
No 153
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.32 E-value=6.5e-11 Score=80.16 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=99.1
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
...++.+...+....+.-|||+|.|||.++..++++.-+...++.+|+|++......++. +.+.++.+|+.+
T Consensus 34 s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~ii~gda~~ 105 (194)
T COG3963 34 SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--------PGVNIINGDAFD 105 (194)
T ss_pred HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------CCccccccchhh
Confidence 344455666677778889999999999999999988555668999999999999988876 677899999887
Q ss_pred cC-----CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 100 LP-----FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 100 ~~-----~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
+. .+...||.|+|.-.+-.+|- ..++++.+...|++||.++...+.+.+
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~s 161 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPLS 161 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence 54 44567999999999888864 467899999999999999888777433
No 154
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=1.6e-11 Score=90.28 Aligned_cols=129 Identities=27% Similarity=0.346 Sum_probs=100.1
Q ss_pred hhHHHHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh
Q 027517 4 FSLKLQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS 83 (222)
Q Consensus 4 ~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (222)
++.||.+...++......|-+...-....+.+..++|+|||.|.+... .|...+++.|++...+..+++.-
T Consensus 15 h~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~~---- 85 (293)
T KOG1331|consen 15 HSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRSG---- 85 (293)
T ss_pred HHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccCC----
Confidence 467888887777777777644332233345588999999999987642 25568999999998888777651
Q ss_pred hhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCccc---HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 84 KACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 84 ~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.......|+..+|+.+.+||.+++..++||+.. ...+++++.+.++|||...+..+..
T Consensus 86 -----~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 86 -----GDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred -----CceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 226788899999998899999999999999953 5789999999999999988766543
No 155
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.31 E-value=2.1e-11 Score=92.02 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=81.3
Q ss_pred CCeEEEecCCCChhHHHHHH----HhC---CCCcEEEEeCChhHHHHHhcchhh--------------------------
Q 027517 35 GDNVLDVCCGSGDLSFLLSE----QVG---SQGKVIGLDFSKNQLSMASSRQDL-------------------------- 81 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~----~~~---~~~~~~~~D~~~~~~~~~~~~~~~-------------------------- 81 (222)
..+|+..||++|.-...++- ..+ ...+|+|+|+|+.+++.|++-.-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 46999999999976543332 211 135799999999999999865211
Q ss_pred --hhhhcCCCeeEEeCCCCCcCCC-CCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEE
Q 027517 82 --VSKACYKNIEWVEGDALDLPFS-DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 82 --~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
........|.|.+.|+.+.+.+ .+.||+|+|.+++.|++ ...++++++.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0122236788999999875433 46899999999999994 4789999999999999998875
No 156
>PHA03412 putative methyltransferase; Provisional
Probab=99.30 E-value=1.7e-11 Score=89.04 Aligned_cols=96 Identities=22% Similarity=0.459 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC--CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.+.+|||+|||+|.++..+++.+. +..+++++|+++.+++.++++. .++.++..|+...++ +.+||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCEEEEcchhcccc-cCCccEEE
Confidence 367999999999999999887642 2458999999999999999775 468899999887554 45899999
Q ss_pred EcccccCcc--c----------HHHHHHHHhcccCCCcE
Q 027517 112 MGYGLRNVV--D----------KRKALEESFRVLKPGSR 138 (222)
Q Consensus 112 ~~~~l~~~~--~----------~~~~l~~~~~~l~~gG~ 138 (222)
++-.+.... + ...+++...+++++|+.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 988877432 1 34578888886666664
No 157
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.29 E-value=2e-11 Score=87.37 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=70.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHh--------CCCCcEEEEeCChhHHHHHhcchhh------------------------
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV--------GSQGKVIGLDFSKNQLSMASSRQDL------------------------ 81 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~------------------------ 81 (222)
+..+|+..||++|.-...++-.+ +...+++|.|+|+.+++.|++-.-.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999997654332211 1134899999999999999853210
Q ss_pred -hhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEE
Q 027517 82 -VSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 82 -~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.......+|.|...|+.+.+.+.+.||+|+|.+++-++.+ ..++++.+.+.|+|||.|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0122226889999999883334578999999999999954 588999999999999999885
No 158
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.28 E-value=7.4e-11 Score=100.28 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=81.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~ 112 (222)
++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+++++...+... .++.++++|+.+.. ...++||+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~-~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSG-RQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-cceEEEEccHHHHHHHcCCCcCEEEE
Confidence 4679999999999999999875 2 2379999999999999999987654311 37899999987632 11467999999
Q ss_pred cccccC-----------cccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 GYGLRN-----------VVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~-----------~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.-.... ..+...++..+.++|+|||.+++..
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 654211 1234667888899999999997753
No 159
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=99.27 E-value=9.7e-11 Score=89.79 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=113.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCC---CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE--EeCCCCCc----CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGS---QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW--VEGDALDL----PF 102 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~~~----~~ 102 (222)
.+++..++|+|||+|.-+..+++.+.+ ...++++|+|.++++.+.+++... ..+.+.+ +++|..+. +.
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~---~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG---NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc---cCCCeEEEEEEecHHHHHhhccc
Confidence 356668999999999999988887642 347999999999999999887611 1245555 77777652 21
Q ss_pred --CCCceeEEEE-cccccCccc--HHHHHHHHhc-ccCCCcEEEEE-ecCCCCCc----------hhhHHHHHHhhcccc
Q 027517 103 --SDCFFDAITM-GYGLRNVVD--KRKALEESFR-VLKPGSRISVL-DFNKSTQP----------FTTAIQEWMIDNVVV 165 (222)
Q Consensus 103 --~~~~~D~v~~-~~~l~~~~~--~~~~l~~~~~-~l~~gG~l~i~-~~~~~~~~----------~~~~~~~~~~~~~~~ 165 (222)
......+++. ..++.+++. ...+|+++++ .|+|||.+++. +....... ....+......+...
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr 230 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANE 230 (319)
T ss_pred ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHH
Confidence 1123455554 457888854 5678999999 99999998773 33322110 111111100000000
Q ss_pred ccccc-CChh----------------------------------HHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 166 PVASG-YGLA----------------------------------EEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 166 ~~~~~-~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
..... +... ...+.+.....+-|+.++++.+++++||++.+.+..
T Consensus 231 ~Lg~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~~~v~~~~~~f~~GE~I~te~S~Kyt~~~~~~l~~~aG~~~~~~W~d 310 (319)
T TIGR03439 231 ILGSEAFREEDWEFLGEWDEELGRHEAFYIPKKDVSIGLEGVVIRKGEKIRFECSGKYDKDEREKLCQSAGLKVVDVWTN 310 (319)
T ss_pred HhCccccCHHHcEEEEEEcCCCCeEEEEEEeCCcEEEcCceEEEcCCCEEEEEeeeCCCHHHHHHHHHHCCCeeeEEEEC
Confidence 00000 0000 000111112346789999999999999999999999
Q ss_pred cCCeeeeE
Q 027517 211 SGGLMGNL 218 (222)
Q Consensus 211 ~~~~~~~~ 218 (222)
+.+.++++
T Consensus 311 ~~~~f~~~ 318 (319)
T TIGR03439 311 EDGDYGIY 318 (319)
T ss_pred CCCceeee
Confidence 98887765
No 160
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.27 E-value=1.1e-10 Score=89.39 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=62.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-hhhcCCCeeEEe-CCCCCcC----CCCCce
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVE-GDALDLP----FSDCFF 107 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~i~~~~-~d~~~~~----~~~~~~ 107 (222)
++.++||||||+|.....++... ++.+++++|+++.+++.|++++... ... .++.+.. .|..++. .+.++|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~--~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN--GAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc--CcEEEEEccchhhhhhcccccCCce
Confidence 45799999999998888877664 5679999999999999999998765 232 4677653 3332221 235689
Q ss_pred eEEEEcccccCcc
Q 027517 108 DAITMGYGLRNVV 120 (222)
Q Consensus 108 D~v~~~~~l~~~~ 120 (222)
|+|+|+-.++.-.
T Consensus 191 DlivcNPPf~~s~ 203 (321)
T PRK11727 191 DATLCNPPFHASA 203 (321)
T ss_pred EEEEeCCCCcCcc
Confidence 9999999887553
No 161
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.26 E-value=1.4e-10 Score=91.83 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=79.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D 108 (222)
.++.+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++...+... .+++++++|+.+.. ...++||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~-~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDL-SKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCC-CcEEEEEccHHHHHHHHHhcCCCCC
Confidence 35789999999999998765532 33489999999999999999987654310 26899999987742 1245799
Q ss_pred EEEEcccccCcc---------cHHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVV---------DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~---------~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|++.-....-. +...+++...++|+|||.++...
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 999976642221 23445566789999999998654
No 162
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.25 E-value=1.3e-10 Score=84.81 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=86.4
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCceeEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~ 111 (222)
...+||||||.|.++..+++. +|...++|+|+....+..+.++....+. +|+.+++.|+..+- .++++.|-|+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l---~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGL---KNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCC---CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 358999999999999999999 5888999999999999999988866553 39999999998742 3445899999
Q ss_pred EcccccCccc--------HHHHHHHHhcccCCCcEEEEE
Q 027517 112 MGYGLRNVVD--------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.++.=-+... ....++.+.+.|+|||.+.+.
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 9887554432 367899999999999999885
No 163
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.24 E-value=2.8e-10 Score=81.84 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=82.7
Q ss_pred HHHHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 22 WKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 22 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+..+..++. ..++.+|||+|||+|.++..++... ..+++++|.++++++.+++++...+. .++.++++|+.+.
T Consensus 40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~---~~v~~~~~D~~~~ 114 (199)
T PRK10909 40 VRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA---GNARVVNTNALSF 114 (199)
T ss_pred HHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEEchHHHH
Confidence 3344455443 2457799999999999998655442 35899999999999999988766543 4789999998763
Q ss_pred -CCCCCceeEEEEcccccCcccHHHHHHHHhc--ccCCCcEEEEEecC
Q 027517 101 -PFSDCFFDAITMGYGLRNVVDKRKALEESFR--VLKPGSRISVLDFN 145 (222)
Q Consensus 101 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~l~~gG~l~i~~~~ 145 (222)
+...++||+|+++-.+.. .-...+++.+.. +++|++.+++....
T Consensus 115 l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 115 LAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 222346999999887432 223445555554 47899988776544
No 164
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.1e-09 Score=75.30 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=98.6
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
..-++|||||+|..+..+++..+++.-+.++|+++.+.+..++.+...+ .+++.++.|+.+--. +++.|+++.+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~l~-~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSGLR-NESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhhhc-cCCccEEEECC
Confidence 5689999999999999999998888889999999999998777665444 467889999887433 37899999876
Q ss_pred cccCccc---------------------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCCh
Q 027517 115 GLRNVVD---------------------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGL 173 (222)
Q Consensus 115 ~l~~~~~---------------------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (222)
..-.-++ ..+++..+-.+|.|.|.+++......
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N-------------------------- 172 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN-------------------------- 172 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------------------------
Confidence 6432221 24566667778888898887644322
Q ss_pred hHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecC
Q 027517 174 AEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSG 212 (222)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 212 (222)
.++++-++++..||..........
T Consensus 173 ---------------~p~ei~k~l~~~g~~~~~~~~Rk~ 196 (209)
T KOG3191|consen 173 ---------------KPKEILKILEKKGYGVRIAMQRKA 196 (209)
T ss_pred ---------------CHHHHHHHHhhcccceeEEEEEec
Confidence 356788899999998765554443
No 165
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.23 E-value=5.5e-11 Score=88.06 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=89.3
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-C-
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P-F- 102 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~- 102 (222)
+..++...+.++|||||+++|..+..++..++++++++.+|.+++..+.|++.+...+.. .+|+++.+++.+. + .
T Consensus 71 L~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~--~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 71 LNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA--HKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEeccHHHHHHHHH
Confidence 333444556779999999999999999988777889999999999999999998776543 6899999998763 2 1
Q ss_pred ----CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 ----SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..++||+|+.-.. -......++.+.+.|+|||.+++-.
T Consensus 149 ~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred hccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1258999998653 2345677888889999999987743
No 166
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.22 E-value=7.4e-10 Score=83.48 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=85.7
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcC-CCeeEEeCCCCCcC-CCCCcee
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACY-KNIEWVEGDALDLP-FSDCFFD 108 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~~D 108 (222)
+..| ++||-||.|.|..++.+++.. +..+++.+|+++..++.+++.+........ ++++++..|..+.- ...++||
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 3344 699999999999999999984 556899999999999999998865442222 79999999987743 2234799
Q ss_pred EEEEcccccCcc----cHHHHHHHHhcccCCCcEEEEE
Q 027517 109 AITMGYGLRNVV----DKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 109 ~v~~~~~l~~~~----~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|++...-..=+ -...+++.+++.|+++|.++..
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999855433111 1278999999999999999876
No 167
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.22 E-value=1.4e-10 Score=89.89 Aligned_cols=109 Identities=13% Similarity=0.220 Sum_probs=77.1
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SD 104 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~ 104 (222)
+.+++...++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+. .+++++++|+.++.. ..
T Consensus 165 v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l---~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 165 ARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL---TNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCHHHHHHhcC
Confidence 344444345689999999999999999874 46899999999999999988765443 479999999987532 23
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++||+|+++-.-.-. ...+++. ...++|++.+++.+
T Consensus 239 ~~~D~Vv~dPPr~G~--~~~~~~~-l~~~~~~~ivyvsc 274 (315)
T PRK03522 239 EVPDLVLVNPPRRGI--GKELCDY-LSQMAPRFILYSSC 274 (315)
T ss_pred CCCeEEEECCCCCCc--cHHHHHH-HHHcCCCeEEEEEC
Confidence 469999997542111 1223333 33467777777654
No 168
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.21 E-value=6.4e-10 Score=84.82 Aligned_cols=121 Identities=27% Similarity=0.336 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-C
Q 027517 18 QHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-D 96 (222)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d 96 (222)
......+.++.+....+|..|||--||||.++....-. +.+++|.|++..|+.-++.++...+. ....+... |
T Consensus 181 ~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i---~~~~~~~~~D 254 (347)
T COG1041 181 MDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGI---EDYPVLKVLD 254 (347)
T ss_pred cCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCc---CceeEEEecc
Confidence 45667788888888999999999999999999877644 67999999999999999999977653 35555555 9
Q ss_pred CCCcCCCCCceeEEEEcccccCcc-----c----HHHHHHHHhcccCCCcEEEEEec
Q 027517 97 ALDLPFSDCFFDAITMGYGLRNVV-----D----KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 97 ~~~~~~~~~~~D~v~~~~~l~~~~-----~----~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+..+|+++.++|.|++-....--. . ...+++.+.++|++||++++..+
T Consensus 255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999998877899999855543221 1 46789999999999999988643
No 169
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.19 E-value=5.8e-10 Score=79.45 Aligned_cols=120 Identities=21% Similarity=0.257 Sum_probs=90.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC---CCceeEEEE
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS---DCFFDAITM 112 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~ 112 (222)
.++|||||=+.......... ..|+.||+.+. .-.+.+.|+.+.|.| .++||+|.+
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~------------------~~~I~qqDFm~rplp~~~~e~FdvIs~ 110 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ------------------HPGILQQDFMERPLPKNESEKFDVISL 110 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC------------------CCCceeeccccCCCCCCcccceeEEEE
Confidence 59999998765544433322 37999999761 335677788886653 568999999
Q ss_pred cccccCcccH---HHHHHHHhcccCCCcE-----EEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 113 GYGLRNVVDK---RKALEESFRVLKPGSR-----ISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 113 ~~~l~~~~~~---~~~l~~~~~~l~~gG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
+.+|.++|++ ..+++++.+.|+|+|. |+++-+.+ .+ .+
T Consensus 111 SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-------Cv---------------------------~N 156 (219)
T PF11968_consen 111 SLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP-------CV---------------------------TN 156 (219)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch-------Hh---------------------------hc
Confidence 9999999875 5789999999999999 77764331 01 22
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
.++++.+.|..+++.-||..++..+..
T Consensus 157 SRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 157 SRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred ccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 467899999999999999999876544
No 170
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.18 E-value=8.8e-10 Score=89.14 Aligned_cols=110 Identities=20% Similarity=0.345 Sum_probs=80.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--- 100 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--- 100 (222)
..+.+.+...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++...+. .+++++.+|+.+.
T Consensus 282 ~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~---~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 282 DRALEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGI---ANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCC---CceEEEeCCHHHHHHH
Confidence 44555556667789999999999999999876 24899999999999999998765443 5899999998752
Q ss_pred -CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+....+||+|++.-.=.-+ ...+++.+.+ ++|++.++++
T Consensus 356 ~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEEc
Confidence 1223569999985542111 2455565554 7888877764
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.18 E-value=5.1e-10 Score=79.10 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=74.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---C-CCCCce
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---P-FSDCFF 107 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~-~~~~~~ 107 (222)
..++.+|||+|||+|-.+..+++.. ...+|+..|.++ .++..+.+..........++.+...|..+. . ....+|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 4567899999999999988888773 456899999988 888888887654422225778888776441 1 234579
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|+|++.-+++.......+++-+.++++|+|.+++....+
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999999988788899999999999999977766554
No 172
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=99.16 E-value=1e-09 Score=81.14 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=97.4
Q ss_pred hHHHHHHHHhhCCC-CCCeEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 20 RIWKRMAVSWSGAK-TGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 20 ~~~~~~~~~~~~~~-~~~~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
+.|....+..+... .-...||||||- ......+++...|.++|.-+|.+|-.+..++..+..... .+..+++.|
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~---g~t~~v~aD 129 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR---GRTAYVQAD 129 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT---SEEEEEE--
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC---ccEEEEeCC
Confidence 44444455554444 567899999994 456777888778999999999999999999988765421 137899999
Q ss_pred CCCcC-----------CCCCceeEEEEcccccCcc---cHHHHHHHHhcccCCCcEEEEEecCCCCCchh-hHHHHHHhh
Q 027517 97 ALDLP-----------FSDCFFDAITMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQPFT-TAIQEWMID 161 (222)
Q Consensus 97 ~~~~~-----------~~~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~-~~~~~~~~~ 161 (222)
+.+.. +.-...=.+++..++|+++ ++..+++.++..|.||.+|+++..+....+.. ......+..
T Consensus 130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~ 209 (267)
T PF04672_consen 130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQ 209 (267)
T ss_dssp TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHc
Confidence 98731 1112233677888899885 47899999999999999999998887544332 222222221
Q ss_pred cccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEE
Q 027517 162 NVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAK 206 (222)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 206 (222)
. ....++.|.+|+.++|. ||++++
T Consensus 210 ~-------------------~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 210 A-------------------GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp C-------------------CS----B-HHHHHHCCT--TSEE-T
T ss_pred C-------------------CCCceecCHHHHHHHcC--CCccCC
Confidence 1 12235679999999995 998875
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.16 E-value=3.7e-10 Score=85.02 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=73.1
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+..+...+.+.+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++... .+++.++++|+.
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~ 85 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDAL 85 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccc
Confidence 3455566777777778899999999999999999987 34899999999999999987643 158999999998
Q ss_pred CcCCCCCceeEEEEcccccC
Q 027517 99 DLPFSDCFFDAITMGYGLRN 118 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~ 118 (222)
+++++ .+|.|+++..++.
T Consensus 86 ~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 86 KVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred cCCch--hceEEEEcCCccc
Confidence 87654 4899999877653
No 174
>PRK00536 speE spermidine synthase; Provisional
Probab=99.15 E-value=1.8e-09 Score=80.45 Aligned_cols=101 Identities=18% Similarity=0.019 Sum_probs=76.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
..+..++||-+|.|.|..++.++++ +. +|+.+|+++++++.+++.+..... -.-++++++.. +.+ ...++||+
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDV 142 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDL 142 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCE
Confidence 3456689999999999999999987 33 999999999999999996644221 11267777652 211 12367999
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|++-.. ......+.+++.|+|||.++..
T Consensus 143 IIvDs~-----~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 143 IICLQE-----PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEcCC-----CChHHHHHHHHhcCCCcEEEEC
Confidence 998643 2267789999999999999764
No 175
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=1.9e-09 Score=79.01 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=91.0
Q ss_pred hhhHHHHHHHHhhC---CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe
Q 027517 18 QHRIWKRMAVSWSG---AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE 94 (222)
Q Consensus 18 ~~~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 94 (222)
..+.|.+++.+.+. ...+..+||+|||+|..+..+++.++ .+.++++|.|+.++..+.++..+.... .++.++.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~--g~i~v~~ 205 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLS--GRIEVIH 205 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhc--CceEEEe
Confidence 34556666665542 23455899999999999999999984 789999999999999999998876654 5777776
Q ss_pred CCCCC-----cCCCCCceeEEEEcccccCccc--------------------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 95 GDALD-----LPFSDCFFDAITMGYGLRNVVD--------------------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 95 ~d~~~-----~~~~~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+++. .+...+++|++++|-..-.-.| ...++.-..+.|+|||.+.+..
T Consensus 206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 55543 1234578999999776432221 1245666778999999987754
Q ss_pred cC
Q 027517 144 FN 145 (222)
Q Consensus 144 ~~ 145 (222)
-.
T Consensus 286 ~~ 287 (328)
T KOG2904|consen 286 VE 287 (328)
T ss_pred cc
Confidence 43
No 176
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.15 E-value=2.4e-10 Score=86.67 Aligned_cols=113 Identities=21% Similarity=0.178 Sum_probs=82.6
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
+..+...-..-.++.|||+|||+|-++...++. + ..+|+++|.|.-+ +.+++.....+.+ ..++++.+.++++.+
T Consensus 49 r~~i~~n~~lf~dK~VlDVGcGtGILS~F~akA-G-A~~V~aVe~S~ia-~~a~~iv~~N~~~--~ii~vi~gkvEdi~L 123 (346)
T KOG1499|consen 49 RNAILQNKHLFKDKTVLDVGCGTGILSMFAAKA-G-ARKVYAVEASSIA-DFARKIVKDNGLE--DVITVIKGKVEDIEL 123 (346)
T ss_pred HHHHhcchhhcCCCEEEEcCCCccHHHHHHHHh-C-cceEEEEechHHH-HHHHHHHHhcCcc--ceEEEeecceEEEec
Confidence 334444334457889999999999999998887 3 3489999987655 8888777655543 468999999999877
Q ss_pred CCCceeEEEEcccccCc---ccHHHHHHHHhcccCCCcEEE
Q 027517 103 SDCFFDAITMGYGLRNV---VDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~l~~gG~l~ 140 (222)
|.+++|+|++-+.-+.+ .-...+|-.=-++|+|||.++
T Consensus 124 P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 124 PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 77889999974432222 234555666667999999886
No 177
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=5.3e-10 Score=77.69 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=65.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
..-.+..|+|+|||||.++...+-. ++ .+|+++|+++++++.++++..... .++.+.+.|+.++. .++|.+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~~---~~~dtv 112 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDFR---GKFDTV 112 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhcC---CccceE
Confidence 3345778999999999999877655 33 489999999999999999987633 58999999999874 568999
Q ss_pred EEcccccCc
Q 027517 111 TMGYGLRNV 119 (222)
Q Consensus 111 ~~~~~l~~~ 119 (222)
++|-.+...
T Consensus 113 imNPPFG~~ 121 (198)
T COG2263 113 IMNPPFGSQ 121 (198)
T ss_pred EECCCCccc
Confidence 998877644
No 178
>PLN02823 spermine synthase
Probab=99.12 E-value=2.1e-09 Score=83.32 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=79.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCc-CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~-~~~~~~~D~v 110 (222)
+...+||.+|+|.|..+..+++. .+..+++.+|+++++++.+++.+..... -..++++++.+|.... ....++||+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 34579999999999999988876 3445899999999999999988743211 0126899999998773 3345689999
Q ss_pred EEcccccC--c-cc---HHHHHH-HHhcccCCCcEEEEE
Q 027517 111 TMGYGLRN--V-VD---KRKALE-ESFRVLKPGSRISVL 142 (222)
Q Consensus 111 ~~~~~l~~--~-~~---~~~~l~-~~~~~l~~gG~l~i~ 142 (222)
++-..-.. - +. ...+++ .+++.|+|||.+++.
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 98632100 0 10 245677 899999999998764
No 179
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.4e-10 Score=78.28 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=85.3
Q ss_pred HHHHHhhC--CCCCCeEEEecCCCChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhh-----h--hcCCCeeEE
Q 027517 24 RMAVSWSG--AKTGDNVLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVS-----K--ACYKNIEWV 93 (222)
Q Consensus 24 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~-----~--~~~~~i~~~ 93 (222)
..+++.+. ..|+.+.||+|+|+|.++..++..++..+. ..|||.-++.++.+++++.... . -...++.+.
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 34455554 689999999999999999999877755443 4999999999999998876533 1 112567888
Q ss_pred eCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 94 EGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 94 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+|....-....+||.|.+...... .-+++...|++||.+++-.
T Consensus 150 vGDgr~g~~e~a~YDaIhvGAaa~~------~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 150 VGDGRKGYAEQAPYDAIHVGAAASE------LPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eCCccccCCccCCcceEEEccCccc------cHHHHHHhhccCCeEEEee
Confidence 9998876555678999999865433 3345677789999998743
No 180
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.11 E-value=6.1e-10 Score=84.46 Aligned_cols=89 Identities=24% Similarity=0.305 Sum_probs=69.7
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
......+++.+...++.+|||+|||+|.++..+++.. .+++++|+++++++.++++... ++++++++|+.+
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~ 98 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE------DNLTIIEGDALK 98 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc------CceEEEEChhhc
Confidence 3444566677777788899999999999999999873 3899999999999999876531 489999999998
Q ss_pred cCCCCCceeEEEEccccc
Q 027517 100 LPFSDCFFDAITMGYGLR 117 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~ 117 (222)
+++++-.+|.|+++...+
T Consensus 99 ~~~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 99 VDLSELQPLKVVANLPYN 116 (272)
T ss_pred CCHHHcCcceEEEeCCcc
Confidence 765432258888876543
No 181
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.10 E-value=6.6e-10 Score=84.72 Aligned_cols=91 Identities=24% Similarity=0.317 Sum_probs=72.4
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+...+++.....++.+|||||||+|.++..+++. ..+++++|+++.+++.+++++...+. ..+++++.+|+.+
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~--~~~v~ii~~Dal~ 96 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPL--ASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECCHhh
Confidence 345566777777788899999999999999999876 35899999999999999988754321 2589999999988
Q ss_pred cCCCCCceeEEEEccccc
Q 027517 100 LPFSDCFFDAITMGYGLR 117 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~ 117 (222)
.+. .+||.|+++..++
T Consensus 97 ~~~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 97 TEF--PYFDVCVANVPYQ 112 (294)
T ss_pred hcc--cccCEEEecCCcc
Confidence 654 3589999876654
No 182
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.10 E-value=1.7e-09 Score=86.96 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=73.5
Q ss_pred CCeEEEecCCCChhHHHHHHHh---CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
+..|+|+|||+|-++...++.. +...+|+++|-++.+....+++....+.+ .+|+++.+|+++...+ .++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~--~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG--DKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT--TTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC--CeEEEEeCcccCCCCC-CceeEEE
Confidence 5689999999999987665541 22458999999998887776664444433 6899999999998765 5899999
Q ss_pred Ec--ccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 112 MG--YGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 112 ~~--~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
+= +++..-+-....|....+.|||||+++
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 72 222222334567889999999999875
No 183
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.10 E-value=2.2e-09 Score=76.28 Aligned_cols=114 Identities=27% Similarity=0.346 Sum_probs=82.5
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCc---------EEEEeCChhHHHHHhcchhhhhhhcCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGK---------VIGLDFSKNQLSMASSRQDLVSKACYKN 89 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~---------~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 89 (222)
.......++......++..|||.-||+|.+....+... .... ++|.|+++++++.+++++...+.. ..
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~--~~ 89 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE--DY 89 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C--GG
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcccC--Cc
Confidence 34555667777778888999999999999998776664 3334 899999999999999998765543 46
Q ss_pred eeEEeCCCCCcCCCCCceeEEEEcccccCccc--------HHHHHHHHhcccCC
Q 027517 90 IEWVEGDALDLPFSDCFFDAITMGYGLRNVVD--------KRKALEESFRVLKP 135 (222)
Q Consensus 90 i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~l~~ 135 (222)
+.+.+.|+.++++.++++|.|+++..+..-.. ...+++++.+++++
T Consensus 90 i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 90 IDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred eEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 88999999998866678999999888775421 24668888999998
No 184
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.08 E-value=4e-09 Score=85.19 Aligned_cols=112 Identities=20% Similarity=0.311 Sum_probs=87.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDA 109 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~ 109 (222)
...++.+|||++||+|.-+.+++..++..+.+++.|+++.-++..++++.+.+. .++.+...|...+. .....||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhchhhcCe
Confidence 567889999999999999999999987777999999999999999998877654 57888888887653 22357999
Q ss_pred EEEccc------ccCccc----------------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 110 ITMGYG------LRNVVD----------------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 110 v~~~~~------l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
|++-.. +..-++ ..++|....+.|||||+|+-++-+
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 994222 222121 257899999999999998765544
No 185
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=99.07 E-value=6e-09 Score=77.97 Aligned_cols=106 Identities=21% Similarity=0.281 Sum_probs=66.8
Q ss_pred CCeEEEecCCCChh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchh-hhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 35 GDNVLDVCCGSGDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD-LVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
+.+|+=||||+=-+ +..+++....+..++++|+++++.+.+++... ..+.+ .++.++.+|..+....-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~--~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS--KRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc--CCeEEEecchhccccccccCCEEEE
Confidence 35999999997544 55666555566789999999999999998766 22322 6899999998876544467999998
Q ss_pred cccccCc-ccHHHHHHHHhcccCCCcEEEEE
Q 027517 113 GYGLRNV-VDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~~-~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.....-- .+..++++++.+.++||..+++-
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6654422 46789999999999999998774
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.07 E-value=4.2e-09 Score=79.16 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=70.1
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+..+...+++.+...++.+|||+|||+|.++..+++.. ..++++|+++.+++.++++... .+++.++.+|+.
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~ 85 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDAL 85 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchh
Confidence 34555667777777788899999999999999999873 3699999999999999877632 158999999998
Q ss_pred CcCCCCCcee---EEEEccccc
Q 027517 99 DLPFSDCFFD---AITMGYGLR 117 (222)
Q Consensus 99 ~~~~~~~~~D---~v~~~~~l~ 117 (222)
+.+++ ++| .|+++..++
T Consensus 86 ~~~~~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 86 KVDLP--DFPKQLKVVSNLPYN 105 (253)
T ss_pred cCChh--HcCCcceEEEcCChh
Confidence 87654 466 777766543
No 187
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=99.06 E-value=1.3e-08 Score=72.86 Aligned_cols=103 Identities=27% Similarity=0.276 Sum_probs=75.2
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChh----HHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN----QLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 101 (222)
.+...++.+||-+|+++|....+++...++.+.|+++++|+. .++.|+++ +|+..+..|+....
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---------~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---------PNIIPILEDARHPEKYR 138 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---------TTEEEEES-TTSGGGGT
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---------CceeeeeccCCChHHhh
Confidence 356788999999999999999999999988889999999994 45555555 69999999998632
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.--+.+|+|++.-+ ...+...++.+....||+||.+++.
T Consensus 139 ~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 139 MLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 11247999998543 2233456678888899999998875
No 188
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.06 E-value=3.4e-09 Score=79.21 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=80.8
Q ss_pred CCeEEEecCCCChhHH----HHHHHhC----CCCcEEEEeCChhHHHHHhcchhh-------h-----------------
Q 027517 35 GDNVLDVCCGSGDLSF----LLSEQVG----SQGKVIGLDFSKNQLSMASSRQDL-------V----------------- 82 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~----~l~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~-------~----------------- 82 (222)
.-+|...||++|.-.. .+.+.++ ...+|++.|+|..+++.|+.-.-. .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999996543 3334432 146899999999999998853221 0
Q ss_pred --hhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEe
Q 027517 83 --SKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 83 --~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.......|.|...|+.+.+...+.||+|+|.+++-++. ...++++.++..|+|||.|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 01112467788888877553446799999999999995 46889999999999999999853
No 189
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.05 E-value=7.6e-09 Score=75.83 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=59.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCee-EEeCCCCC-----cCCCCCc
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIE-WVEGDALD-----LPFSDCF 106 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~-----~~~~~~~ 106 (222)
.++.+|||+|||+|.++..+++. + ..+|+++|+++.++....+.- +++. +...|+.. +...-..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~--------~~v~~~~~~ni~~~~~~~~~~d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD--------ERVKVLERTNIRYVTPADIFPDFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC--------CCeeEeecCCcccCCHhHcCCCcee
Confidence 36779999999999999999976 2 348999999998887632221 2322 22333332 2211235
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|+++++.. .++..+.+.|+| |.+++.
T Consensus 144 ~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 144 FDVSFISLI--------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred eeEEEeehH--------hHHHHHHHHhCc-CeEEEE
Confidence 787776553 347788889999 766543
No 190
>PRK04148 hypothetical protein; Provisional
Probab=99.05 E-value=8e-09 Score=68.71 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=75.1
Q ss_pred HHHHHhhCCCCCCeEEEecCCCCh-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
..+.+.+...++.+|+|+|||+|. .+..|.+. +.+|+++|+++..++.++++ .+.++..|+.+...
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence 344454544556799999999996 66666643 67999999999999888765 46889999988543
Q ss_pred C-CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 103 S-DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 103 ~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
. -+.+|+|++.. ..++....+.++.+ +-|.-+++..+....
T Consensus 73 ~~y~~a~liysir---pp~el~~~~~~la~--~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 73 EIYKNAKLIYSIR---PPRDLQPFILELAK--KINVPLIIKPLSGEE 114 (134)
T ss_pred HHHhcCCEEEEeC---CCHHHHHHHHHHHH--HcCCCEEEEcCCCCC
Confidence 2 35689999854 33455555666665 335667777666543
No 191
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.04 E-value=3.1e-09 Score=84.13 Aligned_cols=108 Identities=10% Similarity=0.202 Sum_probs=78.3
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCC
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDC 105 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~ 105 (222)
..++...++.+|||++||+|.++..++.. +.+++++|+++.+++.++++....+. .+++++.+|+.+... ...
T Consensus 226 ~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~~~~~ 299 (374)
T TIGR02085 226 RQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFATAQMS 299 (374)
T ss_pred HHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHHhcCC
Confidence 33433345679999999999999998854 45899999999999999998865543 479999999876421 124
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+||+|++.-.-... ...+++.+. .++|++.+++.+
T Consensus 300 ~~D~vi~DPPr~G~--~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 300 APELVLVNPPRRGI--GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCEEEECCCCCCC--cHHHHHHHH-hcCCCeEEEEEe
Confidence 59999997653221 244555554 478988888764
No 192
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.02 E-value=2e-09 Score=79.80 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-------------------------hhhcC
Q 027517 34 TGDNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-------------------------SKACY 87 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-------------------------~~~~~ 87 (222)
++.++||||||+--+.. .+++. -.+++..|+++...+..++-+... ....+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 46699999999854432 22222 237999999887766433221110 00111
Q ss_pred CCe-eEEeCCCCCcC-CCC-----CceeEEEEcccccCc----ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHH
Q 027517 88 KNI-EWVEGDALDLP-FSD-----CFFDAITMGYGLRNV----VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQ 156 (222)
Q Consensus 88 ~~i-~~~~~d~~~~~-~~~-----~~~D~v~~~~~l~~~----~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~ 156 (222)
..| .++..|+.+.+ +.. ++||+|++.+.++.. ++..++++++.++|||||.|++...-.... +..
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-Y~v--- 208 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-YMV--- 208 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE-EEE---
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee-EEE---
Confidence 234 36678887643 221 359999999998866 345788999999999999999876543221 000
Q ss_pred HHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEee
Q 027517 157 EWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
+... ...-.++.+.+++.++++||.+.+...
T Consensus 209 ------------G~~~----------F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 209 ------------GGHK----------FPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ------------TTEE----------EE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ------------CCEe----------cccccCCHHHHHHHHHHcCCEEEeccc
Confidence 0000 001246889999999999999998874
No 193
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.4e-08 Score=74.44 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=90.9
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..++..+...|+.+|+|-|.|+|.++..+++.++|.++++.+|+...-.+.+++.+...+.+ .++.+...|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~--~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG--DNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC--cceEEEEeecccCCcc
Confidence 35667778899999999999999999999999999999999999998888888888766654 7899999999875543
Q ss_pred --CCceeEEEEcccccCcccHHHHHHHHhcccCCCcE
Q 027517 104 --DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSR 138 (222)
Q Consensus 104 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~ 138 (222)
...+|.|+. .+|.+-.++-.++++||.+|.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred ccccccceEEE-----cCCChhhhhhhhHHHhhhcCc
Confidence 456899988 667777778888889998875
No 194
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.98 E-value=3.2e-09 Score=79.12 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=80.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCc-CCCCC-cee
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDL-PFSDC-FFD 108 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~-~~~~~-~~D 108 (222)
.++..+||-||.|.|..+..+.+. .+..+++.+|+++..++.+++.+..... ...++++++..|.... ....+ +||
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCCcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 346779999999999999999876 3446899999999999999998754321 1226899999998763 22234 899
Q ss_pred EEEEcccccCccc----HHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+.-..-...+. ....++.+++.|+|||.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9997443211111 2688999999999999998765
No 195
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.97 E-value=1.2e-08 Score=77.34 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
...+|||+|||+|..+..+.+.++...+++++|.|+.+++.++......... ...........+. .+..+.|+|++.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN--RNAEWRRVLYRDF-LPFPPDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc--ccchhhhhhhccc-ccCCCCcEEEEe
Confidence 4569999999999988888877764458999999999999988876543211 1111111111111 111234999999
Q ss_pred ccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 114 YGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 114 ~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
++|..+++ ...+++.+++.+.+ .|+++|+..+.+
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 99998865 45667777776655 999999887654
No 196
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.96 E-value=4.9e-09 Score=85.98 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=84.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~ 111 (222)
.+..+||||||.|.++..+++. .|...++|+|++...+..+..+....+ ..|+.+++.|+..+ .+++.++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 4568999999999999999999 588899999999998888777654433 25888888887543 25677899999
Q ss_pred EcccccCccc--------HHHHHHHHhcccCCCcEEEEE
Q 027517 112 MGYGLRNVVD--------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.++.--|... ....++.+.+.|+|||.+.+.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 9887555432 267899999999999999875
No 197
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.95 E-value=1e-08 Score=80.51 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=88.9
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
++.-++.+.... .+++||++-|=||.++.+.+.. ++ +++.+|.|..+++.++++..-++... .++.++++|+
T Consensus 205 qR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~-~~~~~i~~Dv 277 (393)
T COG1092 205 QRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDG-DRHRFIVGDV 277 (393)
T ss_pred hHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCc-cceeeehhhH
Confidence 344444444443 3889999999999999998864 44 89999999999999999987655322 4678999998
Q ss_pred CCc----CCCCCceeEEEEcccc---------cCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 98 LDL----PFSDCFFDAITMGYGL---------RNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 98 ~~~----~~~~~~~D~v~~~~~l---------~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.+. .....+||+|++--.= .-..+...++..+.++|+|||.+++..-.
T Consensus 278 f~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 278 FKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 874 2234589999973331 11124578899999999999999886544
No 198
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.95 E-value=3.5e-09 Score=80.36 Aligned_cols=93 Identities=20% Similarity=0.311 Sum_probs=74.2
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+++.+...++..++|++||.|..+..+++.+++.++|+|+|.++++++.+++++.. ..++.++++|+.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLK 81 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHH
Confidence 445667777777888999999999999999999976568999999999999999988754 158999999988753
Q ss_pred --CCC--CceeEEEEcccccCc
Q 027517 102 --FSD--CFFDAITMGYGLRNV 119 (222)
Q Consensus 102 --~~~--~~~D~v~~~~~l~~~ 119 (222)
.+. .++|.|++......+
T Consensus 82 ~~l~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 82 EVLAEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred HHHHcCCCccCEEEECCCcccc
Confidence 111 279999986665543
No 199
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=4.4e-09 Score=69.70 Aligned_cols=88 Identities=23% Similarity=0.372 Sum_probs=70.0
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+....+.-.+++++|+|||.|-++..+.- .....|.|+|+++++++.+.+++.... -++.+.+.|+.++.+..+
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm--~~~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqcdildle~~~g 113 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSM--PKNESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQCDILDLELKGG 113 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhc--CCCceEEeeecCHHHHHHHhhchHHhh----hhhheeeeeccchhccCC
Confidence 34444555788999999999999955442 234579999999999999999987655 467899999999877778
Q ss_pred ceeEEEEcccccCc
Q 027517 106 FFDAITMGYGLRNV 119 (222)
Q Consensus 106 ~~D~v~~~~~l~~~ 119 (222)
.||.++.+..+..-
T Consensus 114 ~fDtaviNppFGTk 127 (185)
T KOG3420|consen 114 IFDTAVINPPFGTK 127 (185)
T ss_pred eEeeEEecCCCCcc
Confidence 89999998877644
No 200
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.91 E-value=9e-08 Score=71.53 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=100.6
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh------------------------------hh
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL------------------------------VS 83 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~------------------------------~~ 83 (222)
...+||--|||.|+++..++.. +..+.+.|.|--|+-...--+.. .+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3569999999999999999976 67999999998875443321110 00
Q ss_pred -------hhcCCCeeEEeCCCCCcCCCC---CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhh
Q 027517 84 -------KACYKNIEWVEGDALDLPFSD---CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTT 153 (222)
Q Consensus 84 -------~~~~~~i~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~ 153 (222)
.....++....+|+.+.-.++ ++||+|++++.+..-++....++.+.++|||||..+=..+-.-..
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~---- 208 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHF---- 208 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccC----
Confidence 111246677777877754333 689999999888888889999999999999999665332211000
Q ss_pred HHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEee
Q 027517 154 AIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYE 209 (222)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 209 (222)
... - ......--+|.+|+..+.+..||++++...
T Consensus 209 --~~~-----~---------------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 --EPM-----S---------------IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred --CCC-----C---------------CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 0 000001246889999999999999987665
No 201
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.91 E-value=1.1e-08 Score=73.34 Aligned_cols=100 Identities=25% Similarity=0.404 Sum_probs=71.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++..|+|+.||-|.++..+++. .+...|+++|++|.+++..+++....+.. .++..+++|..++.. ...+|.|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~--~~i~~~~~D~~~~~~-~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVE--NRIEVINGDAREFLP-EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-T--TTEEEEES-GGG----TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCC--CeEEEEcCCHHHhcC-ccccCEEE
Confidence 467889999999999999999985 35568999999999999999988776554 578899999988754 57899999
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
++..-. ...++....+++++||.+
T Consensus 175 m~lp~~----~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 175 MNLPES----SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp E--TSS----GGGGHHHHHHHEEEEEEE
T ss_pred ECChHH----HHHHHHHHHHHhcCCcEE
Confidence 966422 234677788888888875
No 202
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.91 E-value=4.7e-08 Score=70.02 Aligned_cols=119 Identities=19% Similarity=0.160 Sum_probs=79.7
Q ss_pred hHHHHHHHHhhC-CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 20 RIWKRMAVSWSG-AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
...+..+...+. .-++.+|||++||+|.++..++.+ +. .+++++|.++.+++.+++++...+.. .++++++.|+.
T Consensus 34 ~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~sr-ga-~~v~~vE~~~~a~~~~~~N~~~~~~~--~~~~~~~~D~~ 109 (189)
T TIGR00095 34 RVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSR-GA-KVAFLEEDDRKANQTLKENLALLKSG--EQAEVVRNSAL 109 (189)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCc--ccEEEEehhHH
Confidence 333344444432 235789999999999999999876 22 38999999999999999988765432 46889999985
Q ss_pred Cc-C-C-C-CCceeEEEEcccccCcccHHHHHHHH--hcccCCCcEEEEEe
Q 027517 99 DL-P-F-S-DCFFDAITMGYGLRNVVDKRKALEES--FRVLKPGSRISVLD 143 (222)
Q Consensus 99 ~~-~-~-~-~~~~D~v~~~~~l~~~~~~~~~l~~~--~~~l~~gG~l~i~~ 143 (222)
+. . . . ...||+|+..-.+.. .....++..+ ..+++++|.+++..
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 52 2 1 1 224788887665543 2234444444 34688888776543
No 203
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.90 E-value=2.3e-10 Score=80.26 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=71.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+.++||+|+|.|..+.+++..+ .+|++.+.|..|..+.+++ +..++. ..+....+-+||+|.|.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----------~ynVl~--~~ew~~t~~k~dli~clN 177 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----------NYNVLT--EIEWLQTDVKLDLILCLN 177 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----------CCceee--ehhhhhcCceeehHHHHH
Confidence 4699999999999999998664 3799999999998887765 222221 112111234699999999
Q ss_pred cccCcccHHHHHHHHhcccCC-CcEEEE
Q 027517 115 GLRNVVDKRKALEESFRVLKP-GSRISV 141 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~-gG~l~i 141 (222)
.+..--++-++++.++.+|+| +|++++
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 998888889999999999999 887765
No 204
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.90 E-value=1.8e-08 Score=79.67 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=82.0
Q ss_pred HHHHHhhCCC-CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 24 RMAVSWSGAK-TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 24 ~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
..+.+.+... ++.+|||++||+|..+..++...+ ..+|+++|+++.+++.+++++...+. .++.+.+.|+..+..
T Consensus 46 ~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~ 121 (382)
T PRK04338 46 VLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLH 121 (382)
T ss_pred HHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHh
Confidence 3444444322 346899999999999999988743 34899999999999999998865543 356788899876422
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
..++||+|++.-. ..+..++....+.+++||.++++
T Consensus 122 ~~~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 122 EERKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred hcCCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 1356999999542 33456777767778999999997
No 205
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.89 E-value=7.5e-08 Score=68.33 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhh----CCCCCC-eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE
Q 027517 19 HRIWKRMAVSWS----GAKTGD-NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 93 (222)
Q Consensus 19 ~~~~~~~~~~~~----~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (222)
.+.|.+++++-+ ..+... +++|+|+|.|.-...++=.. |..+++.+|....-....+.-....+. .|++++
T Consensus 28 ~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~ 103 (184)
T PF02527_consen 28 EEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVI 103 (184)
T ss_dssp HHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEE
Confidence 456666665533 122222 89999999999998888775 778999999999877777766665554 589999
Q ss_pred eCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 94 EGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 94 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+..+++ +....+||+|++..+ .+...++.-+...+++||.++..
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARAV----APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred Eeeecc-cccCCCccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEE
Confidence 999998 434578999999764 45678888899999999998775
No 206
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.89 E-value=3.2e-08 Score=71.03 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=88.4
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc------
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------ 100 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------ 100 (222)
..+++.-..+++||||.=||..+..++..++++++|+++|++++..+.+.+.....+.. ..+.++++.+.+.
T Consensus 66 ~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~--~KI~~i~g~a~esLd~l~~ 143 (237)
T KOG1663|consen 66 QMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD--HKITFIEGPALESLDELLA 143 (237)
T ss_pred HHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc--ceeeeeecchhhhHHHHHh
Confidence 33444556779999999999999999999999999999999999999997766555444 6899999988762
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....++||.++.-. +-.+.....+++.+++|+||.+++-.
T Consensus 144 ~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 144 DGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred cCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEec
Confidence 12356899999733 22344577899999999999998854
No 207
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.87 E-value=1.8e-08 Score=71.67 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 20 RIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 20 ~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
...++.+..++.. -++.+|||+-||+|......+.+ + ..+|+.+|.++..+...++++...+.. .++.++..|.
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-G-A~~v~fVE~~~~a~~~i~~N~~~l~~~--~~~~v~~~d~ 101 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-G-AKSVVFVEKNRKAIKIIKKNLEKLGLE--DKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHT-G--GGEEEEESSH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-C-CCeEEEEECCHHHHHHHHHHHHHhCCC--cceeeeccCH
Confidence 3445556666654 37889999999999999988766 2 248999999999999999998876644 3688888886
Q ss_pred CC-cC---CCCCceeEEEEcccccCcccHHHHHHHHh--cccCCCcEEEEEecCC
Q 027517 98 LD-LP---FSDCFFDAITMGYGLRNVVDKRKALEESF--RVLKPGSRISVLDFNK 146 (222)
Q Consensus 98 ~~-~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~l~~gG~l~i~~~~~ 146 (222)
.. +. ....+||+|++.-....-.....++..+. .+|+++|.+++-....
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 54 21 13578999999776554322466777776 7999999887655443
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.5e-08 Score=73.82 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=72.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
....+.+++.....++..|||||+|.|.++..+++. ..+|+++|+++.+++..+++... ..+++++.+|+..
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk 87 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALK 87 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhc
Confidence 334456677777778899999999999999999987 34799999999999999988652 2699999999999
Q ss_pred cCCCCC-ceeEEEEccccc
Q 027517 100 LPFSDC-FFDAITMGYGLR 117 (222)
Q Consensus 100 ~~~~~~-~~D~v~~~~~l~ 117 (222)
.+++.- .++.|+++-..+
T Consensus 88 ~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 88 FDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CcchhhcCCCEEEEcCCCc
Confidence 877632 568888876644
No 209
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.8e-07 Score=65.73 Aligned_cols=104 Identities=22% Similarity=0.318 Sum_probs=77.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--------CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------FS 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------~~ 103 (222)
..++.+|+||||.+|.++..+++..+++..|+++|+.|--. .+++.++++|++..+ +.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~--------------~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------------IPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc--------------CCCceEEeeeccCccHHHHHHHHcC
Confidence 36788999999999999999999987777899999977321 157999999998742 33
Q ss_pred CCceeEEEEcccc--------cCccc---HHHHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 104 DCFFDAITMGYGL--------RNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 104 ~~~~D~v~~~~~l--------~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
..++|+|++-..- +|... ...+++-...+|+|||.+++-.+.....
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 4457999975543 22211 2456777778999999998877665443
No 210
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.84 E-value=3.1e-08 Score=74.81 Aligned_cols=115 Identities=20% Similarity=0.171 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+.+.+++.-..-.++.|||+|||+|.++-..+.. + ..+|++++- .+|.+.|++..+.. ....+|.++.+-++++
T Consensus 164 TY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqA-G-A~~vYAvEA-S~MAqyA~~Lv~~N--~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 164 TYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQA-G-AKKVYAVEA-SEMAQYARKLVASN--NLADRITVIPGKIEDI 238 (517)
T ss_pred HHHHHHHhcccccCCcEEEEecCCccHHHHHHHHh-C-cceEEEEeh-hHHHHHHHHHHhcC--CccceEEEccCccccc
Confidence 34445555444456789999999999998877765 2 348999996 56888888877654 3347899999999998
Q ss_pred CCCCCceeEEEEcccccCc--ccHHHHHHHHhcccCCCcEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNV--VDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~l~~gG~l~i 141 (222)
.+| ++.|++++--.-.-+ +..-...-..+++|+|.|.++-
T Consensus 239 eLP-Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 239 ELP-EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred cCc-hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 876 679999973321111 2223344456799999998863
No 211
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.4e-07 Score=72.78 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=89.3
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCC-CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--- 101 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 101 (222)
....+...|+.+|||++++.|.-+.++++.+... ..|+++|.++.-+...++++.+.+. .++.....|....+
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDARRLAELL 224 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEecccccccccc
Confidence 3346677899999999999999999999997543 3469999999999999999887765 46788888876543
Q ss_pred CCCCceeEEEE------cccccCccc----------------HHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 102 FSDCFFDAITM------GYGLRNVVD----------------KRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 102 ~~~~~~D~v~~------~~~l~~~~~----------------~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
....+||.|++ .+++..-|+ +.++|....+.|||||.|+-++-+..
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 12235999995 223322222 35789999999999999987665543
No 212
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=6.3e-08 Score=67.56 Aligned_cols=157 Identities=19% Similarity=0.245 Sum_probs=100.2
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHh--cchh-hhhhhcCCCeeEEeCCCCCcCC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS--SRQD-LVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~--~~~~-~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
++...+..++.+|+|+=.|.|+++..++...++.+.|+++-..+...-..+ .++. ........|++.+-.+...+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~- 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG- 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-
Confidence 445567789999999999999999999999988888887754332110000 0000 001111235555555554444
Q ss_pred CCCceeEEEEcccccCc-------ccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhH
Q 027517 103 SDCFFDAITMGYGLRNV-------VDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAE 175 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~-------~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (222)
+.+..|++......|.+ .....+.+.+.+.|||||.+++.+............
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt-------------------- 178 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDT-------------------- 178 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhh--------------------
Confidence 34556777764444433 235788999999999999999988765443211111
Q ss_pred HHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 176 EYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
......+..-+.+..+.+||+.....++
T Consensus 179 -------~~~~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 179 -------ITLHRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred -------hhhcccChHHHHHHHHhhcceeeeeehh
Confidence 1123457788899999999998766554
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.78 E-value=5.3e-08 Score=71.49 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=70.5
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (222)
..+++-....+.+.|||+|.|||.++..+++. +.+|+++|+++.++....++....+.+ ...+++.+|....+.|
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~--~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKS--GKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCcc--ceeeEEecccccCCCc
Confidence 34455557788999999999999999999976 568999999999999999988765433 6899999999887654
Q ss_pred CCceeEEEEcccc
Q 027517 104 DCFFDAITMGYGL 116 (222)
Q Consensus 104 ~~~~D~v~~~~~l 116 (222)
.||.++++...
T Consensus 123 --~fd~cVsNlPy 133 (315)
T KOG0820|consen 123 --RFDGCVSNLPY 133 (315)
T ss_pred --ccceeeccCCc
Confidence 58999986553
No 214
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.78 E-value=7.5e-08 Score=74.73 Aligned_cols=124 Identities=25% Similarity=0.343 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHh------CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEE
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQV------GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWV 93 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (222)
....+.+..++...++.+|+|.+||+|.++..+.+.+ ....+++|+|+++.++..++.++.-.+... .+..+.
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~-~~~~i~ 110 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN-SNINII 110 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC-BGCEEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc-cccccc
Confidence 4455667777777778899999999999998887743 245689999999999998886653322221 234577
Q ss_pred eCCCCCcCC-C-CCceeEEEEcccccCc--cc-------------------HHHHHHHHhcccCCCcEEEEEec
Q 027517 94 EGDALDLPF-S-DCFFDAITMGYGLRNV--VD-------------------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 94 ~~d~~~~~~-~-~~~~D~v~~~~~l~~~--~~-------------------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..|....+. . ..+||+|+++-.+... .+ .-.++..+.+.|++||++.++.+
T Consensus 111 ~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 111 QGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp ES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 788665432 2 4689999997775533 10 12578899999999999877643
No 215
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.77 E-value=8.4e-08 Score=75.43 Aligned_cols=109 Identities=12% Similarity=0.138 Sum_probs=74.4
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 23 KRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 23 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
...+.++....+ .+|||++||+|.++..+++.. .+|+++|+++++++.++++....+. .++.++.+|+.+...
T Consensus 187 ~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~---~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 187 LEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI---DNVQIIRMSAEEFTQ 259 (353)
T ss_pred HHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEEcCHHHHHH
Confidence 344445444323 479999999999999888763 3899999999999999998765543 478999999876311
Q ss_pred C----------C------CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 S----------D------CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~----------~------~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
. . ..||+|++.-.= -.-...+++.+.+ |++.+++.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR--~G~~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 260 AMNGVREFRRLKGIDLKSYNCSTIFVDPPR--AGLDPDTCKLVQA---YERILYISC 311 (353)
T ss_pred HHhhccccccccccccccCCCCEEEECCCC--CCCcHHHHHHHHc---CCcEEEEEc
Confidence 0 1 137999885541 1112445555543 778887754
No 216
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.76 E-value=2e-07 Score=71.36 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=78.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh--h--hhhhcCCCeeEEeCCCCCc-CCCCCce
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD--L--VSKACYKNIEWVEGDALDL-PFSDCFF 107 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~--~~~~~~~~i~~~~~d~~~~-~~~~~~~ 107 (222)
+...+||-+|.|.|-..+.+.+. +...+++.+|.+|+|++.++.... . .+.-.-+++.++..|+.+. ....+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34568999999999999999987 335689999999999999984322 1 1111227899999998874 2334579
Q ss_pred eEEEEcccccCccc-----HHHHHHHHhcccCCCcEEEEEe
Q 027517 108 DAITMGYGLRNVVD-----KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 108 D~v~~~~~l~~~~~-----~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|.|+....=-.-+. -..+..-+++.|+++|.+++.-
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 99997443211111 1456778889999999998753
No 217
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.75 E-value=7.5e-08 Score=72.82 Aligned_cols=119 Identities=21% Similarity=0.308 Sum_probs=81.5
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
++.-+.++... ..+++|||+-|=||.++.+.+.. ...+|+.+|.|..+++.+++++..++... .++.+++.|+.
T Consensus 111 qR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~-~~~~~~~~Dvf 184 (286)
T PF10672_consen 111 QRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDL-DRHRFIQGDVF 184 (286)
T ss_dssp GHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CC-TCEEEEES-HH
T ss_pred HHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCc-cceEEEecCHH
Confidence 44444455443 35789999999999999987753 22379999999999999999987655321 47899999987
Q ss_pred Cc-C--CCCCceeEEEEccccc---Cc---ccHHHHHHHHhcccCCCcEEEEEe
Q 027517 99 DL-P--FSDCFFDAITMGYGLR---NV---VDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 99 ~~-~--~~~~~~D~v~~~~~l~---~~---~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+. . ...++||+|++--.-. .+ .+...++..+.++|+|||.|+++.
T Consensus 185 ~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp HHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 63 1 1235899999743311 11 245678899999999999987654
No 218
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=1.6e-06 Score=63.05 Aligned_cols=201 Identities=12% Similarity=0.133 Sum_probs=122.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCC---CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ---GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD 96 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 96 (222)
..++....+......+...+|+|+|+..-+..+...+.+. .+++.+|+|...+...-+.+....+. -.+.-+++|
T Consensus 64 aIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~--l~v~~l~~~ 141 (321)
T COG4301 64 AILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG--LEVNALCGD 141 (321)
T ss_pred HHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC--CeEeehhhh
Confidence 3344445555556668899999999999999988876442 38999999999887765554433211 134445666
Q ss_pred CCC-c-CCC-CCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEE-ecCCCCC----------chhhHHHHHHh
Q 027517 97 ALD-L-PFS-DCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVL-DFNKSTQ----------PFTTAIQEWMI 160 (222)
Q Consensus 97 ~~~-~-~~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~-~~~~~~~----------~~~~~~~~~~~ 160 (222)
.+. + ..+ .+.==.++...++.++. +...++..++..++||-.+++. +...+.. .....+.....
T Consensus 142 ~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~gVTa~FnlNvL 221 (321)
T COG4301 142 YELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQGVTAEFNLNVL 221 (321)
T ss_pred HHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCccchHHHHHHHHH
Confidence 543 1 112 22334455666677773 4678899999999999998874 3322111 11111111111
Q ss_pred hcccccccccCChhH-----HH---------------------------------HHhHHhHhhcCCHHHHHHHHHHcCC
Q 027517 161 DNVVVPVASGYGLAE-----EY---------------------------------QYLKSSIREFLTGKDLEKLALEIGF 202 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~-----~~---------------------------------~~~~~~~~~~~~~~~~~~~l~~~Gf 202 (222)
.+........++... .| +.+-..+.+.++..++..+++.+||
T Consensus 222 a~lNr~f~~nFD~~dfeh~Avyne~~~~iem~L~a~~~qTVr~g~l~ltv~F~age~iLtE~S~Kfslq~irq~laa~gl 301 (321)
T COG4301 222 AHLNRVFGGNFDVDDFEHVAVYNEDEGRIEMYLRAKREQTVRLGALDLTVDFAAGETILTEISRKFSLQAIRQQLAAAGL 301 (321)
T ss_pred HHHHHHhccCCCcchhhhHhhhhhhHHHHHHHhhcCCceEEEecCccceeecCCCceeehhhhhhCCHHHHHHHHHhcCC
Confidence 111111111111100 00 0111124567899999999999999
Q ss_pred eEEEEeeecCCeeeeEeeeC
Q 027517 203 SRAKHYELSGGLMGNLVATR 222 (222)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~k 222 (222)
+.+..++.....+++++++|
T Consensus 302 ~~v~~wtd~~qdf~~~l~~v 321 (321)
T COG4301 302 EPVQKWTDAIQDFGLSLAAV 321 (321)
T ss_pred eEeeehhhhhhhhhhheecC
Confidence 99999999988888888865
No 219
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.72 E-value=1.7e-07 Score=73.99 Aligned_cols=108 Identities=14% Similarity=0.196 Sum_probs=74.5
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-C-
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-P- 101 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~- 101 (222)
..+.+.+... +.+|||++||+|.++..+++.. .+|+++|+++.+++.++++....+. .+++++.+|+.+. +
T Consensus 197 ~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~---~~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 197 EWALDATKGS-KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI---DNVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEECCHHHHHHH
Confidence 3444444322 3579999999999999888763 3899999999999999998765543 4899999998763 1
Q ss_pred CC--------------CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 FS--------------DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 ~~--------------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.. ..+||+|++.-.-. .-...+++.+.+ |++.+++.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~--G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPRA--GLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCCC--CCcHHHHHHHHc---cCCEEEEEe
Confidence 10 12589999855521 112455555544 677777754
No 220
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.72 E-value=2.3e-08 Score=79.63 Aligned_cols=95 Identities=26% Similarity=0.328 Sum_probs=67.8
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEe-----CChhHHHHHhcchhhhhhhcCCCeeEEeC--CCCCcCCCCCcee
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLD-----FSKNQLSMASSRQDLVSKACYKNIEWVEG--DALDLPFSDCFFD 108 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~D 108 (222)
..+||+|||.|.++.+|.++ .|+.+- ..+..++.|.++ .+-...+ ....+|++++.||
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleR----------Gvpa~~~~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALER----------GVPAMIGVLGSQRLPFPSNAFD 183 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhc----------CcchhhhhhccccccCCccchh
Confidence 47899999999999999966 344443 333455555544 1222222 2346899999999
Q ss_pred EEEEcccccCc-ccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 109 AITMGYGLRNV-VDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 109 ~v~~~~~l~~~-~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|-|...+..+ ++-...|-++.|+|+|||+++.+.+.
T Consensus 184 mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 184 MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence 99988877666 44467899999999999999886543
No 221
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.4e-06 Score=61.37 Aligned_cols=105 Identities=20% Similarity=0.157 Sum_probs=77.0
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCc
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCF 106 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 106 (222)
++..++++||-+|+.+|....+++.-.+ .+.++++++|+............. +|+..+..|+.... .--+.
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~ 145 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEK 145 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhccc
Confidence 4678999999999999999999999875 678999999997654443333221 68999999987632 11245
Q ss_pred eeEEEEcccccCccc-HHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVD-KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~-~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.|+|+.--+ -++ ...+..+....||+||.+++.-
T Consensus 146 VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 146 VDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 899887321 133 3456778889999999876643
No 222
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.68 E-value=2e-07 Score=71.05 Aligned_cols=117 Identities=24% Similarity=0.403 Sum_probs=89.1
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CC
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FS 103 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~ 103 (222)
....+...++.+|||++++.|.-+.++++.++..+.+++.|+++.-+...+.+..+.+. .++.....|..... ..
T Consensus 77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~---~~v~~~~~D~~~~~~~~~ 153 (283)
T PF01189_consen 77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV---FNVIVINADARKLDPKKP 153 (283)
T ss_dssp HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC---ceEEEEeecccccccccc
Confidence 33456678899999999999999999999987678999999999999999988877654 57888877776642 22
Q ss_pred CCceeEEEEcc------cccCccc----------------HHHHHHHHhccc----CCCcEEEEEecC
Q 027517 104 DCFFDAITMGY------GLRNVVD----------------KRKALEESFRVL----KPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~------~l~~~~~----------------~~~~l~~~~~~l----~~gG~l~i~~~~ 145 (222)
...||.|+.-. ++..-++ ..++|+...+.+ ||||+++-++-+
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 34699999522 2332232 257899999999 999998776533
No 223
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.67 E-value=9.5e-07 Score=63.88 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHhhC---CCC--CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE
Q 027517 18 QHRIWKRMAVSWSG---AKT--GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW 92 (222)
Q Consensus 18 ~~~~~~~~~~~~~~---~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (222)
..+.|.+++++-+. ..+ +.+++|||+|.|.-...++=. .|+.+++.+|....-+...+......+. +|+++
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv~i 121 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL---ENVEI 121 (215)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC---CCeEE
Confidence 45778787776442 222 579999999999999888744 4677899999988777666665554443 68999
Q ss_pred EeCCCCCcCCCCCc-eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 93 VEGDALDLPFSDCF-FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 93 ~~~d~~~~~~~~~~-~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+++.++++... .. ||+|++..+ .+...+..-+...+++||.++.
T Consensus 122 ~~~RaE~~~~~-~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 122 VHGRAEEFGQE-KKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ehhhHhhcccc-cccCcEEEeehc----cchHHHHHHHHHhcccCCcchh
Confidence 99999987532 23 999999664 3456677778889999998754
No 224
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=6.2e-07 Score=71.94 Aligned_cols=115 Identities=23% Similarity=0.355 Sum_probs=86.6
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
...+...+.+++...++.++||+=||.|.++..+++. ..+|+|+|+++++++.|+++++.++. .|+++..++++
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i---~N~~f~~~~ae 351 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGI---DNVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEeCCHH
Confidence 4556677788888888889999999999999999965 45999999999999999999977665 57999999998
Q ss_pred CcCCC---CCceeEEEEcccccCcccH-HHHHHHHhcccCCCcEEEEEe
Q 027517 99 DLPFS---DCFFDAITMGYGLRNVVDK-RKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 99 ~~~~~---~~~~D~v~~~~~l~~~~~~-~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++... ...+|.|+..-.= .-. ..+++.+. .++|..++++++
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR---~G~~~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPR---AGADREVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred HHhhhccccCCCCEEEECCCC---CCCCHHHHHHHH-hcCCCcEEEEeC
Confidence 86432 2468999983211 111 24444444 456777888764
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.65 E-value=1.2e-07 Score=68.44 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=69.7
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh------hhcCCCeeEEeCCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS------KACYKNIEWVEGDA 97 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~d~ 97 (222)
..+++.++..+++..+|||||.|......+... +-.+++|||+.+...+.++....... .....++.+..+|+
T Consensus 32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 345566778889999999999999988777664 22359999999998887775443221 01124678888998
Q ss_pred CCcCCC---CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 98 LDLPFS---DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 98 ~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
.+.+.. -...|+|++++... -++....|.+....||+|.+++-
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 764321 13479999988653 24556666777788999887754
No 226
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.65 E-value=9.6e-08 Score=74.62 Aligned_cols=111 Identities=27% Similarity=0.335 Sum_probs=92.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
...++.+++|+|||-|..+..+... ....++|+|.++..+..+.......... ..-.+...|+.+.++++..||.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~--~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLD--NKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhh--hhcceehhhhhcCCCCccccCcE
Confidence 3456778999999999999988876 3568999999998888887776544433 23344778888888888999999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.+..+..|.++...++++++++++|||..+..++.
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred EEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99999999999999999999999999999886654
No 227
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.63 E-value=2.1e-06 Score=66.35 Aligned_cols=108 Identities=24% Similarity=0.327 Sum_probs=85.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+|..|+|.=||-|.++..+++.- . .+|+++|++|.+++..++++..++.. ..+..+++|+.+.....+.+|-|++
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~-~~V~A~diNP~A~~~L~eNi~LN~v~--~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-R-PKVYAIDINPDAVEYLKENIRLNKVE--GRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-C-ceEEEEecCHHHHHHHHHHHHhcCcc--ceeeEEeccHHHhhhccccCCEEEe
Confidence 448899999999999999999872 2 24999999999999999998766654 3489999999987654467999999
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
+..- .....+....+.+++||.+-..+.....
T Consensus 263 ~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 263 GLPK----SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred CCCC----cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 7753 3355667777788889998877666543
No 228
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.62 E-value=4.4e-08 Score=69.95 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=62.0
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc------C--C--C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------P--F--S 103 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~--~--~ 103 (222)
++.+|||+||++|.++..+++..++..+++++|+.+.. .. +++..+++|..+. . . .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~--------~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PL--------QNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S---------TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cc--------cceeeeecccchhhHHHhhhhhcccc
Confidence 45899999999999999999885445799999998761 00 3455555555431 1 1 1
Q ss_pred CCceeEEEEcccccCccc-----------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYGLRNVVD-----------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.+++|+|++-.+.....+ ....+.-+.+.|+|||.+++-.+..
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 258999998774332211 2334555567799999988766553
No 229
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.62 E-value=3.6e-06 Score=59.08 Aligned_cols=106 Identities=38% Similarity=0.591 Sum_probs=73.5
Q ss_pred EEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC--cCCCC-CceeEEEEcc
Q 027517 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPFSD-CFFDAITMGY 114 (222)
Q Consensus 38 vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~~D~v~~~~ 114 (222)
++|+|||+|... .+.+.......++++|+++.++..++..... ... ..+.+...|... .++.. ..||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL--GLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC--CceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999999977 4443321123788999999999885544322 110 116777777765 56655 4799994444
Q ss_pred cccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
..++.. ....+.++.+.++|+|.+++.......
T Consensus 128 ~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 128 VLHLLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred ehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444444 788999999999999999888776543
No 230
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.61 E-value=1.5e-06 Score=62.77 Aligned_cols=135 Identities=21% Similarity=0.191 Sum_probs=89.1
Q ss_pred EEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccccc
Q 027517 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLR 117 (222)
Q Consensus 38 vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~ 117 (222)
|.||||--|.+...|++. +...+++++|+++..++.|++.....+.. .++++..+|-.+.-.+.+..|.|+..++=.
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~--~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLE--DRIEVRLGDGLEVLKPGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-T--TTEEEEE-SGGGG--GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCc--ccEEEEECCcccccCCCCCCCEEEEecCCH
Confidence 689999999999999987 34447999999999999999999876544 689999999665222223367777654322
Q ss_pred CcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHH
Q 027517 118 NVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLA 197 (222)
Q Consensus 118 ~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (222)
. -...+|+.....++....+++... -....+++.|
T Consensus 78 ~--lI~~ILe~~~~~~~~~~~lILqP~-------------------------------------------~~~~~LR~~L 112 (205)
T PF04816_consen 78 E--LIIEILEAGPEKLSSAKRLILQPN-------------------------------------------THAYELRRWL 112 (205)
T ss_dssp H--HHHHHHHHTGGGGTT--EEEEEES-------------------------------------------S-HHHHHHHH
T ss_pred H--HHHHHHHhhHHHhccCCeEEEeCC-------------------------------------------CChHHHHHHH
Confidence 1 245677777777766667766421 2446889999
Q ss_pred HHcCCeEEEEeeec--CCeeeeEee
Q 027517 198 LEIGFSRAKHYELS--GGLMGNLVA 220 (222)
Q Consensus 198 ~~~Gf~~~~~~~~~--~~~~~~~~~ 220 (222)
.+.||.+++..-.. +..+-++.+
T Consensus 113 ~~~gf~I~~E~lv~e~~~~YeIi~~ 137 (205)
T PF04816_consen 113 YENGFEIIDEDLVEENGRFYEIIVA 137 (205)
T ss_dssp HHTTEEEEEEEEEEETTEEEEEEEE
T ss_pred HHCCCEEEEeEEEeECCEEEEEEEE
Confidence 99999998755443 334445444
No 231
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=2.5e-08 Score=67.38 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=73.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~ 109 (222)
.-.+.+|||+|.|.-.++-.+.....+..+|...|-+++.+...++-..........+......+...- .....+||+
T Consensus 27 ~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 334679999999975555444333346678999999999988877654433222222333333332221 123457999
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|++...+..-+-...+.+.+++.|+|.|..++..+
T Consensus 107 IlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 107 ILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred EEeccchhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 99877665445567888999999999999666533
No 232
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.4e-06 Score=61.32 Aligned_cols=120 Identities=20% Similarity=0.220 Sum_probs=86.8
Q ss_pred hHHHHHHHHhhCC--CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 20 RIWKRMAVSWSGA--KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 20 ~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
...+..+..++.. -.+.++||+-+|+|.+....+.+. ..+++.+|.+..+....+++....+.. .+..++..|+
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~--~~~~~~~~da 102 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLE--GEARVLRNDA 102 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCc--cceEEEeecH
Confidence 4455666677754 578899999999999998888662 348999999999999999998776533 5788888888
Q ss_pred CCc-C-CC-CCceeEEEEcccccC-cccHHHHHHH--HhcccCCCcEEEEEe
Q 027517 98 LDL-P-FS-DCFFDAITMGYGLRN-VVDKRKALEE--SFRVLKPGSRISVLD 143 (222)
Q Consensus 98 ~~~-~-~~-~~~~D~v~~~~~l~~-~~~~~~~l~~--~~~~l~~gG~l~i~~ 143 (222)
... + .. .++||+|+.--.++. +.+....+.. -..+|+|+|.+++-.
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 743 1 22 235999999877762 1222333333 557899999997753
No 233
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.59 E-value=7.5e-06 Score=62.97 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=64.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.++.++||+||++|.++..+.+. +.+|++||..+ +-...... ++|.....|......+.+.+|.++|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~~~L~~~---------~~V~h~~~d~fr~~p~~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MAQSLMDT---------GQVEHLRADGFKFRPPRKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cCHhhhCC---------CCEEEEeccCcccCCCCCCCCEEEE
Confidence 57889999999999999999976 56999999654 21111111 6899888887665333567999999
Q ss_pred cccccCcccHHHHHHHHhcccCCC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPG 136 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~g 136 (222)
-.+ ..+.++.+-+.+++..|
T Consensus 277 Dmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ecc----cCHHHHHHHHHHHHhcC
Confidence 554 34677888888888766
No 234
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.53 E-value=1.7e-06 Score=74.17 Aligned_cols=123 Identities=19% Similarity=0.127 Sum_probs=85.5
Q ss_pred hHHHHHHHHhhCC-CCCCeEEEecCCCChhHHHHHHHh---C--------------------------------------
Q 027517 20 RIWKRMAVSWSGA-KTGDNVLDVCCGSGDLSFLLSEQV---G-------------------------------------- 57 (222)
Q Consensus 20 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~---~-------------------------------------- 57 (222)
......++...+. .++..++|.+||+|.+....+... .
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4445556665555 567899999999999987665421 0
Q ss_pred CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC--CCceeEEEEcccccCc----ccHHHHHHHHhc
Q 027517 58 SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DCFFDAITMGYGLRNV----VDKRKALEESFR 131 (222)
Q Consensus 58 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~----~~~~~~l~~~~~ 131 (222)
...+++|+|+++.+++.|+.++...+.. ..+.+.++|+.+++.+ .+++|+|+++-.+..- .+...+.+.+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~--~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVA--ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCC--cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence 1126999999999999999998776543 4689999999887543 2469999999876533 123344444444
Q ss_pred ccC---CCcEEEEEec
Q 027517 132 VLK---PGSRISVLDF 144 (222)
Q Consensus 132 ~l~---~gG~l~i~~~ 144 (222)
.++ +|+.+++...
T Consensus 333 ~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 333 RLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHhCCCCeEEEEeC
Confidence 444 8888877654
No 235
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.50 E-value=1.4e-06 Score=61.05 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=79.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
..-.+++|||+|+|+|--+...++.- ...+...|+.+......+-+.+.++ -++.+...|... ++..+|++
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred cccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---CCcceeEE
Confidence 33457899999999999988877662 3479999999988888887776554 366777777655 35679999
Q ss_pred EEcccccCcccHHHHHHHHhcccCC-CcEEEEEecCCCC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKP-GSRISVLDFNKST 148 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~-gG~l~i~~~~~~~ 148 (222)
+...++..-+...+++. +...++. |-.+++.++.+..
T Consensus 147 LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 147 LAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred EeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 99999887777777887 5555554 4456666666543
No 236
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.49 E-value=2.7e-06 Score=58.11 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=66.4
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh---CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
.+...|+|+|||.|.++..++..+ .++.+|+++|.++..++.+..+..........++.+...+..+... ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 667899999999999999998833 3567999999999999999988766553222456666666554322 345688
Q ss_pred EEEcccccCcccHHHHHHHHhc
Q 027517 110 ITMGYGLRNVVDKRKALEESFR 131 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~ 131 (222)
++..+.-..+. ..+++...+
T Consensus 103 ~vgLHaCG~Ls--~~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLS--DRALRLFIR 122 (141)
T ss_pred EEEeecccchH--HHHHHHHHH
Confidence 88766555443 334444444
No 237
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.49 E-value=1.2e-06 Score=69.12 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=79.5
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEEEEcc
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITMGY 114 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~ 114 (222)
.+|||+.||+|..+..++...+...+|+++|+++++++.+++++...+. .++++++.|+..+-. ...+||+|.+.-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~---~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV---ENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 5899999999999999998742224899999999999999999865543 368899999876421 235699999854
Q ss_pred cccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+ ..+...+..+.+.+++||.+.++.
T Consensus 123 -f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 -F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 3 234578888999999999999874
No 238
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.49 E-value=1.7e-06 Score=65.46 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=75.7
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+....+.+.+.+...++..|||+|+|+|.++..+++.. .+++++|+++...+..+++.... ++++++..|+.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~-----~~~~vi~~D~l 86 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASN-----PNVEVINGDFL 86 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTC-----SSEEEEES-TT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhc-----ccceeeecchh
Confidence 45556677777777788999999999999999999883 68999999999999988876421 68999999999
Q ss_pred CcCCCC---CceeEEEEcccccCcccHHHHHHHHhc
Q 027517 99 DLPFSD---CFFDAITMGYGLRNVVDKRKALEESFR 131 (222)
Q Consensus 99 ~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~ 131 (222)
++.... .....|+++-.. +.. ..++.++..
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy-~is--~~il~~ll~ 119 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPY-NIS--SPILRKLLE 119 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETG-TGH--HHHHHHHHH
T ss_pred ccccHHhhcCCceEEEEEecc-cch--HHHHHHHhh
Confidence 876543 345677776554 332 344444444
No 239
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.45 E-value=3.1e-07 Score=63.53 Aligned_cols=76 Identities=25% Similarity=0.466 Sum_probs=54.4
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--CCCCc-eeEEEEc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--FSDCF-FDAITMG 113 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~-~D~v~~~ 113 (222)
.|+|+.||.|..+..+++.+ .+|+++|+++..++.++.++...+.. .++.++++|..+.. ..... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~--~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA--DNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G--GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999873 48999999999999999998877543 68999999998742 22122 8999986
Q ss_pred cccc
Q 027517 114 YGLR 117 (222)
Q Consensus 114 ~~l~ 117 (222)
-...
T Consensus 77 PPWG 80 (163)
T PF09445_consen 77 PPWG 80 (163)
T ss_dssp --BS
T ss_pred CCCC
Confidence 5543
No 240
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.44 E-value=3.9e-06 Score=65.41 Aligned_cols=121 Identities=18% Similarity=0.157 Sum_probs=88.7
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhC---C----------------------------CC-------c
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG---S----------------------------QG-------K 61 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~----------------------------~~-------~ 61 (222)
..+...++.+.+..++..++|--||+|.+....+-... | .. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 44556677777888888999999999999887665521 1 01 2
Q ss_pred EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCc-cc---H----HHHHHHHhccc
Q 027517 62 VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV-VD---K----RKALEESFRVL 133 (222)
Q Consensus 62 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-~~---~----~~~l~~~~~~l 133 (222)
++|+|+++.+++.|+.+....+.. ..|++.+.|+..++.+.+.+|+|+||-....- .+ . ..+.+.+++.+
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~--d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVG--DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCC--ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 779999999999999998876654 67999999999986554679999998875532 11 1 23444556666
Q ss_pred CCCcEEEEE
Q 027517 134 KPGSRISVL 142 (222)
Q Consensus 134 ~~gG~l~i~ 142 (222)
+.-+..+++
T Consensus 335 ~~ws~~v~t 343 (381)
T COG0116 335 AGWSRYVFT 343 (381)
T ss_pred cCCceEEEE
Confidence 666666664
No 241
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=8.2e-06 Score=56.87 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=72.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCc--------CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDL--------PF 102 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~--------~~ 102 (222)
..|+.+|||+||.+|.++....+..+|.+.+.|+|+..- . ++ +.+.++++ |+.+. ..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~--p~---~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E--PP---EGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c--CC---CCcccccccccCCHHHHHHHHHhC
Confidence 367899999999999999999999889999999998431 1 11 35566665 77663 24
Q ss_pred CCCceeEEEEcccccCc----ccHH-------HHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 103 SDCFFDAITMGYGLRNV----VDKR-------KALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~----~~~~-------~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
++.+.|+|++-+.-... .|.. .++.-....++|+|.++.-.+...+.
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 67889999986543221 2222 33444456778999998776665443
No 242
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.38 E-value=2.6e-06 Score=65.00 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=73.9
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+...+++.+...++..++|.-+|.|..+..+++.+++ ++++|+|.++.+++.+++++.... .++.+++++..++
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i~~nF~~l 81 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE----GRVVLIHDNFANF 81 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC----CcEEEEeCCHHHH
Confidence 44566777777778889999999999999999998744 799999999999999999875432 5899999988764
Q ss_pred C-----CCCCceeEEEEcccccC
Q 027517 101 P-----FSDCFFDAITMGYGLRN 118 (222)
Q Consensus 101 ~-----~~~~~~D~v~~~~~l~~ 118 (222)
. ....++|.|++...+..
T Consensus 82 ~~~l~~~~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 82 FEHLDELLVTKIDGILVDLGVSS 104 (305)
T ss_pred HHHHHhcCCCcccEEEEeccCCH
Confidence 2 12356899997666553
No 243
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.36 E-value=2.3e-07 Score=60.21 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=44.0
Q ss_pred EEecCCCChhHHHHHHHhCCCC--cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEEEEcc
Q 027517 39 LDVCCGSGDLSFLLSEQVGSQG--KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAITMGY 114 (222)
Q Consensus 39 LdiG~G~G~~~~~l~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v~~~~ 114 (222)
||+|+..|..+..+++.+.+.. +++++|..+. .+..++........ .+++++.++..+. .++.+++|+++.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~--~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS--DRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC--CeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 6899999999998888765544 7999999885 22222222221221 5799999998763 12246899999865
Q ss_pred cccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
-|..+.....++.+.+.|+|||.+++.+
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2334556778999999999999998754
No 244
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.33 E-value=4e-06 Score=66.04 Aligned_cols=74 Identities=31% Similarity=0.578 Sum_probs=54.9
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+...+.++++..++ .|||+-||.|.++..+++. ..+|+|+|+++++++.|++++...+. .|++++.+++++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i---~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGI---DNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCC---CcceEEEeeccc
Confidence 4455666777776655 8999999999999999965 35899999999999999999876554 589999887765
Q ss_pred c
Q 027517 100 L 100 (222)
Q Consensus 100 ~ 100 (222)
+
T Consensus 256 ~ 256 (352)
T PF05958_consen 256 F 256 (352)
T ss_dssp C
T ss_pred h
Confidence 3
No 245
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.31 E-value=8.9e-06 Score=67.67 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=56.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCC-------CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGS-------QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~ 101 (222)
...+|||.|||+|.++..+++.+.. ...++++|+++.++..++.++..... ..+.+...|.... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~---~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL---LEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC---CCceeeecccccccccccc
Confidence 3458999999999999988876531 13689999999999999887654321 2344555553321 1
Q ss_pred CCCCceeEEEEcccccC
Q 027517 102 FSDCFFDAITMGYGLRN 118 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~ 118 (222)
...+.||+|+.+-.+.-
T Consensus 108 ~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 108 SYLDLFDIVITNPPYGR 124 (524)
T ss_pred cccCcccEEEeCCCccc
Confidence 11257999999877653
No 246
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=3.6e-05 Score=55.96 Aligned_cols=144 Identities=20% Similarity=0.173 Sum_probs=90.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE-EeCCCCCcC---CCCCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW-VEGDALDLP---FSDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~---~~~~~~D 108 (222)
.++..+||+|+.||.++..++++ + ..+|+++|..-..++..-+.- +++.. ...|+..+. +. +..|
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~-g-Ak~VyavDVG~~Ql~~kLR~d--------~rV~~~E~tN~r~l~~~~~~-~~~d 146 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR-G-AKHVYAVDVGYGQLHWKLRND--------PRVIVLERTNVRYLTPEDFT-EKPD 146 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc-C-CcEEEEEEccCCccCHhHhcC--------CcEEEEecCChhhCCHHHcc-cCCC
Confidence 46789999999999999999977 2 348999999887777655543 45543 445655432 22 3678
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcC
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFL 188 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (222)
++++--++- ....+|-.+...++|++.++...-. .++.-.............. .+..
T Consensus 147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKP-----QFEagr~~v~kkGvv~d~~---------------~~~~ 203 (245)
T COG1189 147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKP-----QFEAGREQVGKKGVVRDPK---------------LHAE 203 (245)
T ss_pred eEEEEeehh---hHHHHHHHHHHhcCCCceEEEEecc-----hhhhhhhhcCcCceecCcc---------------hHHH
Confidence 999866544 4477888999999999987653211 1111111111010000000 0112
Q ss_pred CHHHHHHHHHHcCCeEEEEeee
Q 027517 189 TGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 189 ~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
-..++.+.+++.||.+.....-
T Consensus 204 v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 204 VLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred HHHHHHHHHhhcCcEEeeeEcc
Confidence 3468889999999998776544
No 247
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.30 E-value=1.7e-06 Score=60.20 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=76.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
...+.|+|+|+|-++...++. ..+|++++.+|.....+++++... +..+++++.+|+.+..+ ...|+|+|-.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~---g~~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVP---GDVNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCC---CCcceEEEecccccccc--cccceeHHHH
Confidence 368999999999999877765 248999999999999999986332 33699999999999877 3579999844
Q ss_pred cccCc--ccHHHHHHHHhcccCCCcEEEE
Q 027517 115 GLRNV--VDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 115 ~l~~~--~~~~~~l~~~~~~l~~gG~l~i 141 (222)
.=..+ +....++..+.+.||.++.++-
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 32222 3456678888889999998864
No 248
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.26 E-value=1.5e-05 Score=62.40 Aligned_cols=113 Identities=18% Similarity=0.293 Sum_probs=87.4
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDC 105 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~ 105 (222)
.+...|+.+|||.+|.+|.-+.+++..+...+.+++.|.+..-+...+.++.+.+. .+..+...|..+++ ++.
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---~ntiv~n~D~~ef~~~~~~~- 311 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---TNTIVSNYDGREFPEKEFPG- 311 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---CceEEEccCcccccccccCc-
Confidence 34567899999999999999999999988888999999999999998888877664 57778888887664 443
Q ss_pred ceeEEEEcccccC------cc---------c-------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 106 FFDAITMGYGLRN------VV---------D-------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 106 ~~D~v~~~~~l~~------~~---------~-------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+||-|+.-....- -+ + +.++|......+++||+|+-++-+
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 8999995332221 11 1 356788888999999999876543
No 249
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.25 E-value=1.4e-06 Score=62.12 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----CCCCCceeE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFDA 109 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~ 109 (222)
....|+|.-||.|+.+..++.. ...|+++|++|.-+..|+.+++..+.. .+|.++++|..++ .+....+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~--~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVP--DRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCC--ceeEEEechHHHHHHHHhhhhheeee
Confidence 3457999999999999888866 458999999999999999999887765 6999999999874 344456788
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCc
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGS 137 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG 137 (222)
|+.+.......-...-+-.+...++|.|
T Consensus 169 vf~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 169 VFLSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred eecCCCCCCcchhhhhhhhhhhhcchhH
Confidence 8877665544433444555555666654
No 250
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.24 E-value=7.4e-06 Score=59.36 Aligned_cols=104 Identities=25% Similarity=0.241 Sum_probs=76.2
Q ss_pred HhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCCh----hHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC--
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK----NQLSMASSRQDLVSKACYKNIEWVEGDALDLP-- 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-- 101 (222)
+.+.++|+.+||-+|+++|....+.....++...|++++.|. +.+..|+++ +||..+..|+.-..
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------tNiiPIiEDArhP~KY 220 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------TNIIPIIEDARHPAKY 220 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---------CCceeeeccCCCchhe
Confidence 345778999999999999999999999999999999999987 456666666 68888888876531
Q ss_pred -CCCCceeEEEEcccccCcccHH-HHHHHHhcccCCCcEEEEEe
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKR-KALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~l~~gG~l~i~~ 143 (222)
..-.-.|+|++-- .-|++. .+.-+..-.||+||.+++.-
T Consensus 221 RmlVgmVDvIFaDv---aqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 221 RMLVGMVDVIFADV---AQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eeeeeeEEEEeccC---CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 1112356666532 123433 34556777999999998854
No 251
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.20 E-value=9.6e-07 Score=59.43 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=43.9
Q ss_pred eeEEeCCCCCcCCCCCceeEEEEcccccCcc--cHHHHHHHHhcccCCCcEEEEEecC
Q 027517 90 IEWVEGDALDLPFSDCFFDAITMGYGLRNVV--DKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 90 i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+.+.+.......|.+++.|+|++.++++|+. +-..+++.+.+.|||||+|-+..+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 3444333344567788999999999999994 4577899999999999999887654
No 252
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.20 E-value=2.8e-05 Score=55.55 Aligned_cols=108 Identities=21% Similarity=0.183 Sum_probs=83.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~v 110 (222)
.++.+||++|-|.|-....+.++ ++. +=+.++..|+.++..+...-. ...+|.+..+-.++. ..+++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~-~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPD-EHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCc-ceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCccee
Confidence 67889999999999998888876 443 667789999999888776422 226888888876663 2466789999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
+.----.+.++.....+.+.++|||+|.+-......
T Consensus 174 ~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 174 YYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred EeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 976555666788888899999999999987654443
No 253
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.19 E-value=2.3e-05 Score=62.68 Aligned_cols=106 Identities=25% Similarity=0.336 Sum_probs=85.4
Q ss_pred CCCC-eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGD-NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.+.. +++-+|||.-.++..+-+.. -..++.+|+|+-.++....+..+.. +-..+...|+..+.+++++||+|+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~~----~~~~~~~~d~~~l~fedESFdiVI 119 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKER----PEMQMVEMDMDQLVFEDESFDIVI 119 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccCC----cceEEEEecchhccCCCcceeEEE
Confidence 3444 99999999999988887652 3479999999999988887764322 568899999999999999999999
Q ss_pred EcccccCcc-c---------HHHHHHHHhcccCCCcEEEEEec
Q 027517 112 MGYGLRNVV-D---------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 112 ~~~~l~~~~-~---------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.-+.++++- + ....+.++.+++++||+.+.+..
T Consensus 120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 988888772 1 23557899999999999877666
No 254
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.15 E-value=2.3e-05 Score=57.60 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
++..+|+|||||.--++...... .++..|+++|++..+++.....+...+ .+..+...|...-+ +....|+.++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~-~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP-PKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH-TTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC-CCCCcchhhH
Confidence 44779999999999888877765 466799999999999999998877665 46777777877643 3467899998
Q ss_pred cccccCcc
Q 027517 113 GYGLRNVV 120 (222)
Q Consensus 113 ~~~l~~~~ 120 (222)
.=+++-++
T Consensus 178 lK~lp~le 185 (251)
T PF07091_consen 178 LKTLPCLE 185 (251)
T ss_dssp ET-HHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 255
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.13 E-value=2.4e-05 Score=52.60 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=58.4
Q ss_pred cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC--CCCceeEEEEcccccCccc---------HHHHHHHH
Q 027517 61 KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--SDCFFDAITMGYGLRNVVD---------KRKALEES 129 (222)
Q Consensus 61 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~~l~~~~~---------~~~~l~~~ 129 (222)
+|+++|+.+++++..++++...... .+++++..+-+.+.. +.+++|+++.|...-.=.| .-.+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~--~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE--DRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G--SGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC--CcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999876543 479999988777542 3347999998765332222 25678999
Q ss_pred hcccCCCcEEEEEecCC
Q 027517 130 FRVLKPGSRISVLDFNK 146 (222)
Q Consensus 130 ~~~l~~gG~l~i~~~~~ 146 (222)
.+.|+|||.+.++.+..
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999998887664
No 256
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.06 E-value=0.00025 Score=51.08 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=96.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
.+.++.|+||--+.+..++.+. ++...+++.|+++..++.|.+++...... ++++...+|....-.+++.+|+|+..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~--~~i~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS--ERIDVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc--ceEEEeccCCccccCccCCcCEEEEe
Confidence 3445999999999999999988 46668999999999999999998776544 67888888875432334568888865
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHH
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDL 193 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (222)
+.-.. -...++++-.+.|+.=-++++. + .-...++
T Consensus 93 GMGG~--lI~~ILee~~~~l~~~~rlILQ-P------------------------------------------n~~~~~L 127 (226)
T COG2384 93 GMGGT--LIREILEEGKEKLKGVERLILQ-P------------------------------------------NIHTYEL 127 (226)
T ss_pred CCcHH--HHHHHHHHhhhhhcCcceEEEC-C------------------------------------------CCCHHHH
Confidence 54221 2355666666666543355442 1 1134678
Q ss_pred HHHHHHcCCeEEEEeeecC--CeeeeEeee
Q 027517 194 EKLALEIGFSRAKHYELSG--GLMGNLVAT 221 (222)
Q Consensus 194 ~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~ 221 (222)
+++|...+|++++..-+.. ..+-++++.
T Consensus 128 R~~L~~~~~~I~~E~ileE~~kiYEIlv~e 157 (226)
T COG2384 128 REWLSANSYEIKAETILEEDGKIYEILVVE 157 (226)
T ss_pred HHHHHhCCceeeeeeeecccCeEEEEEEEe
Confidence 8889999999887665543 344454443
No 257
>PRK10742 putative methyltransferase; Provisional
Probab=98.01 E-value=4.6e-05 Score=56.22 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=68.4
Q ss_pred HHHHHhhCCCCCC--eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh----hh--cCCCeeEEeC
Q 027517 24 RMAVSWSGAKTGD--NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KA--CYKNIEWVEG 95 (222)
Q Consensus 24 ~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~----~~--~~~~i~~~~~ 95 (222)
+.+.+.++.+++. +|||+-+|+|..+..++.. +++|+++|-++......++.+.... .. ...+++++..
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3456667767776 9999999999999999865 6689999999988877777665531 01 1146888889
Q ss_pred CCCCc-CCCCCceeEEEEcccccCc
Q 027517 96 DALDL-PFSDCFFDAITMGYGLRNV 119 (222)
Q Consensus 96 d~~~~-~~~~~~~D~v~~~~~l~~~ 119 (222)
|..+. .....+||+|++--.+.+-
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCCC
Confidence 88763 2223479999987776664
No 258
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.99 E-value=0.0016 Score=47.92 Aligned_cols=100 Identities=19% Similarity=0.116 Sum_probs=58.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCC-CCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPF-SDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~D~v 110 (222)
-.+++||-+|-.. ++...+...+...+++.+|+++..++..++.....+. +++....|+.+ +|. -.++||++
T Consensus 43 L~gk~il~lGDDD--LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 43 LEGKRILFLGDDD--LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp STT-EEEEES-TT---HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEE
T ss_pred ccCCEEEEEcCCc--HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHHhcCCCEE
Confidence 4678999999443 4333333334556999999999999999988776653 58999999887 332 14789999
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
++.-+ ...+....++.+..+.||..|..
T Consensus 117 ~TDPP-yT~~G~~LFlsRgi~~Lk~~g~~ 144 (243)
T PF01861_consen 117 FTDPP-YTPEGLKLFLSRGIEALKGEGCA 144 (243)
T ss_dssp EE----SSHHHHHHHHHHHHHTB-STT-E
T ss_pred EeCCC-CCHHHHHHHHHHHHHHhCCCCce
Confidence 98553 22345677889999999887743
No 259
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.97 E-value=2.5e-05 Score=53.44 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=47.1
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
.++|+|||.|..+..+++.. +..+++++|.++.+.+.++++....+. .++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 48999999999999998874 666899999999999999988754332 357777766554
No 260
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.96 E-value=2.8e-05 Score=55.00 Aligned_cols=107 Identities=18% Similarity=0.320 Sum_probs=73.1
Q ss_pred CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh----hhcCCCeeEEeCCCCCc-C--CCCCcee
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----KACYKNIEWVEGDALDL-P--FSDCFFD 108 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~d~~~~-~--~~~~~~D 108 (222)
..+.|||||-|.++..++..+ |..-+.|.++....-+..+++..++. .+..+|+.+...++... | +..++.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 468999999999999999986 77789999998888888887765543 22346777777776653 2 2223333
Q ss_pred EEEEcccccCccc--------HHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
-.+..+.=-|+.. ....+.+..-+|++||.++.++
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 3333333223321 1456788888999999988753
No 261
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.00011 Score=59.27 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=78.5
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+...+-++...+.++.++|+.||||.+...+++. -.+|+|+++++++++.|+.++...+. .|.+++++-+++
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngi---sNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGI---SNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCc---cceeeeecchhh
Confidence 445566777888888899999999999999999976 35899999999999999999877665 599999995555
Q ss_pred c-C--C-C-CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 100 L-P--F-S-DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 100 ~-~--~-~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+ + + + -++=++|.....-. .--...+++.+++.-++--.+++++
T Consensus 443 ~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 443 LFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred ccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEc
Confidence 2 1 1 1 01223222211100 0001456666666555555555543
No 262
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.89 E-value=0.00095 Score=50.42 Aligned_cols=169 Identities=14% Similarity=0.038 Sum_probs=98.1
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD- 99 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~- 99 (222)
.+...+.+.+.. ....|+.+|||.-.-...+.. +++..++-+|. |+.++..++.+...+.....+..++..|+.+
T Consensus 69 ~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~--~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~ 144 (260)
T TIGR00027 69 FFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPW--PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQD 144 (260)
T ss_pred HHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCC--CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhh
Confidence 333444444443 345799999998766666532 22345666664 5566666666554322222578888888862
Q ss_pred c-------CCCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhh-HHHHHHhhcccccccc
Q 027517 100 L-------PFSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTT-AIQEWMIDNVVVPVAS 169 (222)
Q Consensus 100 ~-------~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 169 (222)
. .+.....-++++-+++.+++. ...+++.+.+...||+.+++............ ....... ...
T Consensus 145 w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~-~~~----- 218 (260)
T TIGR00027 145 WPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYH-AAR----- 218 (260)
T ss_pred HHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHH-hhh-----
Confidence 1 122234567788888888854 57789999988889988876544431111100 0111100 000
Q ss_pred cCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEE
Q 027517 170 GYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKH 207 (222)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 207 (222)
. .........++++++.++|++.||+..+.
T Consensus 219 ~--------~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 219 G--------VDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred c--------ccccccccCCChhhHHHHHHHCCCeeecC
Confidence 0 00112233468899999999999998775
No 263
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.87 E-value=0.00069 Score=53.66 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=63.4
Q ss_pred CCeEEEecCCCChhHHHHHH--------Hh------CCCCcEEEEeCChhHHHHHhcchhhhhh-----------hcCCC
Q 027517 35 GDNVLDVCCGSGDLSFLLSE--------QV------GSQGKVIGLDFSKNQLSMASSRQDLVSK-----------ACYKN 89 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~--------~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~-----------~~~~~ 89 (222)
..+|+|+|||+|..+..+.. .+ .|..++..-|.-..-.+..=+.+..... .....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 55899999999977754422 11 1234666667543222211111110000 00001
Q ss_pred --eeEEeCCCCCcCCCCCceeEEEEcccccCcccH--------------------------------------HHHHHHH
Q 027517 90 --IEWVEGDALDLPFSDCFFDAITMGYGLRNVVDK--------------------------------------RKALEES 129 (222)
Q Consensus 90 --i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--------------------------------------~~~l~~~ 129 (222)
+.-+.+....--+|.++.+++++.+++|++... ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223444434778899999999999988531 1233444
Q ss_pred hcccCCCcEEEEEecCCC
Q 027517 130 FRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 130 ~~~l~~gG~l~i~~~~~~ 147 (222)
.+-|.|||+++++...++
T Consensus 224 a~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHhccCcEEEEEEecCC
Confidence 557899999999887764
No 264
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=6.5e-05 Score=57.64 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=69.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC--cCCC-CCceeEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPFS-DCFFDAI 110 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~~D~v 110 (222)
...+|||+|.|+|.-+..+-..++.--+++.++.|+..-+............ .......|+.. ++++ .+.|+++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~---~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE---KTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc---cCCCCCCccchhccCCCccceeehh
Confidence 3457999999999887776666533336777777776555544433221111 11112222221 2222 2457777
Q ss_pred EEcccccCccc---HHHHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 111 TMGYGLRNVVD---KRKALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 111 ~~~~~l~~~~~---~~~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
+...-|-+... ....++.++.++.|||.++|++...+.+
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 76555554432 3457999999999999999999887665
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.84 E-value=0.00014 Score=58.54 Aligned_cols=131 Identities=20% Similarity=0.205 Sum_probs=86.4
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCCh----hHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCCCCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK----NQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~ 109 (222)
-.+|+|..+|.|.++..|.+. .|.....-+ ..+....++ .+.=.-.|..+ ++.-+++||+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydR----------GLIG~yhDWCE~fsTYPRTYDL 430 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDR----------GLIGVYHDWCEAFSTYPRTYDL 430 (506)
T ss_pred eeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhc----------ccchhccchhhccCCCCcchhh
Confidence 358999999999999998754 244444333 333333332 11112234433 5544688999
Q ss_pred EEEcccccCcc---cHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhh
Q 027517 110 ITMGYGLRNVV---DKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIRE 186 (222)
Q Consensus 110 v~~~~~l~~~~---~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (222)
|-+.+++.... +...++-++-|+|+|+|.++|-+..
T Consensus 431 lHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~----------------------------------------- 469 (506)
T PF03141_consen 431 LHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV----------------------------------------- 469 (506)
T ss_pred eehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH-----------------------------------------
Confidence 99999888774 3678899999999999999885322
Q ss_pred cCCHHHHHHHHHHcCCeEEEEeeecC--CeeeeEeeeC
Q 027517 187 FLTGKDLEKLALEIGFSRAKHYELSG--GLMGNLVATR 222 (222)
Q Consensus 187 ~~~~~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~k 222 (222)
.-..+++.++++-.++........+ +.-.+.+|+|
T Consensus 470 -~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 470 -DVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred -HHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 1235777888888887765554443 2355777776
No 266
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.82 E-value=0.0003 Score=53.63 Aligned_cols=83 Identities=14% Similarity=0.086 Sum_probs=47.2
Q ss_pred CCeEEEecCCCChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-hhhcCCCeeEEeCCCCC-----cCCCCCce
Q 027517 35 GDNVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-SKACYKNIEWVEGDALD-----LPFSDCFF 107 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~d~~~-----~~~~~~~~ 107 (222)
..++||||+|....- +..++.+ +.+++|.|+++..++.|++..... ... .+|++....-.. +..+.+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L~--~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNLE--SRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-T--TTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccccc--cceEEEEcCCccccchhhhccccee
Confidence 458999999987554 4444443 789999999999999999998776 332 678877553221 11234679
Q ss_pred eEEEEcccccCccc
Q 027517 108 DAITMGYGLRNVVD 121 (222)
Q Consensus 108 D~v~~~~~l~~~~~ 121 (222)
|+.+|+-.++.-.+
T Consensus 179 dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 179 DFTMCNPPFYSSQE 192 (299)
T ss_dssp EEEEE-----SS--
T ss_pred eEEecCCccccChh
Confidence 99999998886643
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.81 E-value=0.00025 Score=51.00 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=56.0
Q ss_pred CCCeEEEecCCCChhHHHHHH---HhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-------C-
Q 027517 34 TGDNVLDVCCGSGDLSFLLSE---QVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-------F- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~- 102 (222)
+++.|+|+|.-.|+.+..++. .++..++|+++|++-...+...... .+. .++|+++++|..+.. .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~--hp~--~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES--HPM--SPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG--------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh--ccc--cCceEEEECCCCCHHHHHHHHHhh
Confidence 456999999999988776654 4456679999999654433222111 111 169999999987642 1
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
......+|+ .-+-|......+.|+.....+++|+++++.+.
T Consensus 108 ~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 108 SPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp ---SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred ccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 112233444 33344445667788889999999999988543
No 268
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.81 E-value=0.00025 Score=53.55 Aligned_cols=94 Identities=20% Similarity=0.295 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..+....++.+...|+...+|.--|.|+.+..+++.+++.++++++|-++.+++.|++++.... .++.+++.++.+
T Consensus 9 pVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~~ 84 (314)
T COG0275 9 PVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFAN 84 (314)
T ss_pred chHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHHH
Confidence 4455667778888888999999999999999999998777789999999999999999986544 689999998776
Q ss_pred cC-----CCCCceeEEEEccccc
Q 027517 100 LP-----FSDCFFDAITMGYGLR 117 (222)
Q Consensus 100 ~~-----~~~~~~D~v~~~~~l~ 117 (222)
+. ...+++|-|++-....
T Consensus 85 l~~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 85 LAEALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HHHHHHhcCCCceeEEEEeccCC
Confidence 42 2235788888654444
No 269
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.00021 Score=54.05 Aligned_cols=148 Identities=19% Similarity=0.197 Sum_probs=88.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHH-------Hhcchh---------------------hh----
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM-------ASSRQD---------------------LV---- 82 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~-------~~~~~~---------------------~~---- 82 (222)
..+||--|||.|+++..++.. +..+.|-++|--|+-. ++..-. ..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHh---cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 458999999999999999876 3456666765554322 111100 00
Q ss_pred -hhh-cC---CCeeEEeCCCCCc-CC--CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhH
Q 027517 83 -SKA-CY---KNIEWVEGDALDL-PF--SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTA 154 (222)
Q Consensus 83 -~~~-~~---~~i~~~~~d~~~~-~~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~ 154 (222)
.+. .. .......+|+.+. +. ..+.||+|+.++.+..-.+.-..++.+..+|||||..+-..+-.-..
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF----- 302 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHF----- 302 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeec-----
Confidence 000 00 1122233555442 11 12469999998877777778888999999999999987542211000
Q ss_pred HHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeee
Q 027517 155 IQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYEL 210 (222)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 210 (222)
.. ..+ ..+...--++.+++..+.+..||++++....
T Consensus 303 ----~d---------~~g-------~~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 303 ----ED---------THG-------VENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred ----cC---------CCC-------CcccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 00 000 0001112468899999999999999876644
No 270
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.80 E-value=0.0003 Score=50.86 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=70.7
Q ss_pred CCeEEEecCCCChhHHHHHHHhCC----C-C---cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGS----Q-G---KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----- 101 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~----~-~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----- 101 (222)
-.+++|+++.+|.++..+.+++-. . . .++++|+.+-+ +. +.|..+++|++...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI---~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PI---EGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------cc---CceEEeecccCCHhHHHHH
Confidence 458999999999999999887633 1 1 39999986621 11 57888899998742
Q ss_pred ---CCCCceeEEEEccc-----ccCcccH------HHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 102 ---FSDCFFDAITMGYG-----LRNVVDK------RKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 102 ---~~~~~~D~v~~~~~-----l~~~~~~------~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
|..++.|+|+|-.+ +|.+.+. ..+|.-...+|+|||.++---+-...
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ 168 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD 168 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc
Confidence 55678999999665 5666442 34566667799999999754433333
No 271
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.79 E-value=0.00016 Score=55.43 Aligned_cols=91 Identities=21% Similarity=0.310 Sum_probs=63.4
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC
Q 027517 22 WKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 22 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
+...+++.+...++..++|.--|.|+.+..+++.+++ ++++++|-++++++.+++++.... .++.++..++.++.
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~----~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD----DRFIFIHGNFSNLD 82 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC----TTEEEEES-GGGHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc----ceEEEEeccHHHHH
Confidence 3456677777788889999999999999999998755 899999999999999999886543 68999998887742
Q ss_pred -----C-CCCceeEEEEccccc
Q 027517 102 -----F-SDCFFDAITMGYGLR 117 (222)
Q Consensus 102 -----~-~~~~~D~v~~~~~l~ 117 (222)
. ...++|.|++-..+.
T Consensus 83 ~~l~~~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLGVS 104 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S--
T ss_pred HHHHHccCCCccCEEEEccccC
Confidence 2 234688888644433
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.70 E-value=0.0013 Score=51.09 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=70.3
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC-CCCcCCCCCce
Q 027517 30 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-ALDLPFSDCFF 107 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~ 107 (222)
....|+++|+-.|+| .|..+..+++.+ +.+|+++|.+++-.+.+++.- .-.++... ....+.-.+.+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lG---------Ad~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLG---------ADHVINSSDSDALEAVKEIA 230 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhC---------CcEEEEcCCchhhHHhHhhC
Confidence 456789999999888 357778888875 479999999999999998873 23344332 21221112349
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
|+|+.+-+ ...+....+.|++||+++++-...
T Consensus 231 d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 231 DAIIDTVG-------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred cEEEECCC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 99998654 345667788899999999987764
No 273
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=97.58 E-value=0.00018 Score=49.13 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHH-HhcchhhhhhhcCCCeeE-EeCCCCC-cCCCCCceeEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSM-ASSRQDLVSKACYKNIEW-VEGDALD-LPFSDCFFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~-~~~~~~~~~~~~~~~i~~-~~~d~~~-~~~~~~~~D~v~ 111 (222)
+++++-+|+...+.-...++. ...++..+|.++--++. .+ .++.. ...|... ...-.++||.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~--GA~~iltveyn~L~i~~~~~-----------dr~ssi~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH--GAAKILTVEYNKLEIQEEFR-----------DRLSSILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHc--CCceEEEEeecccccCcccc-----------cccccccHHHHHHHHHHhhccchhhh
Confidence 567888999877766555544 23479999876521111 11 12211 1122211 112236799999
Q ss_pred EcccccCcc-----c------HHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 112 MGYGLRNVV-----D------KRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 112 ~~~~l~~~~-----~------~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
|.++++|+- | ..+.+.+++++|||||.|++..+..++
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 999998872 2 257889999999999999998777654
No 274
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.50 E-value=0.0067 Score=47.61 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=61.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh--------C-------CCCcEEEEeCChhHHHHHhcchhhhh--hhcCCCe--eEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV--------G-------SQGKVIGLDFSKNQLSMASSRQDLVS--KACYKNI--EWV 93 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~--------~-------~~~~~~~~D~~~~~~~~~~~~~~~~~--~~~~~~i--~~~ 93 (222)
+..-+|+|+||..|..+..+.... . +..+|+.-|.-..-....=+.+.... ....+++ .-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 445599999999999887654421 1 11367777864432222211111110 0001233 334
Q ss_pred eCCCCCcCCCCCceeEEEEcccccCcccH---------------------------------------HHHHHHHhcccC
Q 027517 94 EGDALDLPFSDCFFDAITMGYGLRNVVDK---------------------------------------RKALEESFRVLK 134 (222)
Q Consensus 94 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~---------------------------------------~~~l~~~~~~l~ 134 (222)
.+....--+|.++.|++++.+++||+... ..+|+.=.+-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 56666645788999999999999988320 123444455789
Q ss_pred CCcEEEEEecCCCC
Q 027517 135 PGSRISVLDFNKST 148 (222)
Q Consensus 135 ~gG~l~i~~~~~~~ 148 (222)
|||+++++...+++
T Consensus 175 ~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 175 PGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEE-ST
T ss_pred cCcEEEEEEeeccc
Confidence 99999998877655
No 275
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.49 E-value=0.00054 Score=50.34 Aligned_cols=90 Identities=27% Similarity=0.357 Sum_probs=49.8
Q ss_pred HHHhhCCCCC--CeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh------hcCCCeeEEeCCC
Q 027517 26 AVSWSGAKTG--DNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK------ACYKNIEWVEGDA 97 (222)
Q Consensus 26 ~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~d~ 97 (222)
+....+..++ .+|||.-+|.|..+..++.. +++|+++|-||-+....+.-+..... ....+++++.+|.
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 4455555555 38999999999999988854 56899999998654443322221111 0114789999998
Q ss_pred CC-cCCCCCceeEEEEcccccC
Q 027517 98 LD-LPFSDCFFDAITMGYGLRN 118 (222)
Q Consensus 98 ~~-~~~~~~~~D~v~~~~~l~~ 118 (222)
.+ +..+..+||+|++--.+.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 87 4444678999999776654
No 276
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0058 Score=47.65 Aligned_cols=115 Identities=26% Similarity=0.369 Sum_probs=77.0
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCC---CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQ---GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--- 102 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--- 102 (222)
.+...|+.+|||.++.+|.-+..+.+...+. +.+++-|.++.-+............ +++.+...|+...+-
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~---~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS---PNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC---cceeeecccceecccccc
Confidence 4567899999999999999998888876432 3688999998776666655533222 455566666554331
Q ss_pred ------CCCceeEEEEccc------ccCccc-----------------HHHHHHHHhcccCCCcEEEEEecCC
Q 027517 103 ------SDCFFDAITMGYG------LRNVVD-----------------KRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 103 ------~~~~~D~v~~~~~------l~~~~~-----------------~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
....||-|++--. +.+-++ .-.++.+-.+.||+||+++-++-+.
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 1235888885222 111111 2467888899999999998866554
No 277
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.0038 Score=42.12 Aligned_cols=115 Identities=11% Similarity=0.126 Sum_probs=76.7
Q ss_pred HHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSD 104 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (222)
.++.++...+..+.+|+|+|.|+.....++. + -..-+|+++++-.+..++-+.-+.+- ..+..|..-|+..++..
T Consensus 63 nVLSll~~n~~GklvDlGSGDGRiVlaaar~-g-~~~a~GvELNpwLVaysrl~a~R~g~--~k~trf~RkdlwK~dl~- 137 (199)
T KOG4058|consen 63 NVLSLLRGNPKGKLVDLGSGDGRIVLAAARC-G-LRPAVGVELNPWLVAYSRLHAWRAGC--AKSTRFRRKDLWKVDLR- 137 (199)
T ss_pred HHHHHccCCCCCcEEeccCCCceeehhhhhh-C-CCcCCceeccHHHHHHHHHHHHHHhc--ccchhhhhhhhhhcccc-
Confidence 3455666677779999999999999887765 2 34789999999888887765544332 36778888888887654
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
.|..|+.+.+-.-+++. -.+++.-++.+..++..-+..++
T Consensus 138 -dy~~vviFgaes~m~dL---e~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 138 -DYRNVVIFGAESVMPDL---EDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred -ccceEEEeehHHHHhhh---HHHHHhhCcCCCeEEEEecCCCc
Confidence 35555554443333433 34455566777777665544443
No 278
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.24 E-value=0.0048 Score=50.97 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=68.5
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-----------
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----------- 99 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----------- 99 (222)
..++.+|+=+|||. |..+...++.+ +.+|+++|.+++.++.+++.-. ++...|..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA----------~~v~i~~~e~~~~~~gya~~ 229 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGA----------EFLELDFEEEGGSGDGYAKV 229 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCC----------eEEEeccccccccccchhhh
Confidence 35788999999998 66777778776 4589999999999998887521 111111100
Q ss_pred c--C--------CCC--CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 L--P--------FSD--CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 ~--~--------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
. . +.+ +.+|+|+.......-+.+..+.+++.+.+||||.++..-.
T Consensus 230 ~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 230 MSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 0 011 3589999877654333444446999999999999877654
No 279
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.17 E-value=0.02 Score=40.12 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=86.3
Q ss_pred EecCCCChhHHHHHHHhCCCCcEEEEeCChh--HHHHHh---cchhhhhhhcCCCee-EEeCCCCCcC----CCCCceeE
Q 027517 40 DVCCGSGDLSFLLSEQVGSQGKVIGLDFSKN--QLSMAS---SRQDLVSKACYKNIE-WVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 40 diG~G~G~~~~~l~~~~~~~~~~~~~D~~~~--~~~~~~---~~~~~~~~~~~~~i~-~~~~d~~~~~----~~~~~~D~ 109 (222)
=+|=|.=.++..|++..+....+++.-++.. ..+.-. .++..+.. .++. ....|+.++. ....+||.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~---~g~~V~~~VDat~l~~~~~~~~~~FDr 78 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE---LGVTVLHGVDATKLHKHFRLKNQRFDR 78 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh---cCCccccCCCCCcccccccccCCcCCE
Confidence 3566777788889988754556666654433 222211 22222211 2333 3445777653 24578999
Q ss_pred EEEcccccCc------cc-------HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHH
Q 027517 110 ITMGYGLRNV------VD-------KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEE 176 (222)
Q Consensus 110 v~~~~~l~~~------~~-------~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (222)
|+.+++-.-. .+ ...+++.+..+|+++|.+.|+-...+.
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------- 130 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------- 130 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC----------------------------
Confidence 9998874330 01 256788999999999999876444322
Q ss_pred HHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEeee
Q 027517 177 YQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLVAT 221 (222)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 221 (222)
++.=++..+.+++||..++..++....+..|..+
T Consensus 131 -----------y~~W~i~~lA~~~gl~l~~~~~F~~~~ypgY~~~ 164 (166)
T PF10354_consen 131 -----------YDSWNIEELAAEAGLVLVRKVPFDPSDYPGYEHK 164 (166)
T ss_pred -----------CccccHHHHHHhcCCEEEEEecCCHHHCCCcccC
Confidence 1111556888899999999988876666555443
No 280
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.0053 Score=50.03 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=74.2
Q ss_pred CeEEEecCCCChhHHHH---HHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 36 DNVLDVCCGSGDLSFLL---SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
..|+=+|+|-|-+.... ++....+.++++++-+|.++-..+.+ .....+ .+|+++..|+.+.+.|..+.|++++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~--~~Vtii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWD--NRVTIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhc--CeeEEEeccccccCCchhhccchHH
Confidence 46788999999776544 33434456899999999988776653 222232 5899999999998755578999885
Q ss_pred --cccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 --GYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 --~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+++..-+--+..|..+.+.|||+|+-+=..
T Consensus 446 ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 446 ELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred HhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 3333322223778999999999998876433
No 281
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.12 E-value=0.011 Score=48.95 Aligned_cols=123 Identities=17% Similarity=0.229 Sum_probs=82.4
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCC---CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC
Q 027517 21 IWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGS---QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA 97 (222)
Q Consensus 21 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 97 (222)
...+.+.+.+...+..+|+|..||+|+......+.+.. ...++|.|+++.....++-+..-.+... .+....+|.
T Consensus 173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~--~~~i~~~dt 250 (489)
T COG0286 173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG--DANIRHGDT 250 (489)
T ss_pred HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc--ccccccccc
Confidence 34455666666667779999999999998877776632 2568999999999999988765443221 234444444
Q ss_pred CCcC-C----CCCceeEEEEccccc--Cc-c---------------------c-HHHHHHHHhcccCCCcEEEEEecC
Q 027517 98 LDLP-F----SDCFFDAITMGYGLR--NV-V---------------------D-KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 98 ~~~~-~----~~~~~D~v~~~~~l~--~~-~---------------------~-~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
...| . ...+||.|+++..+. .+ . . ....++++...|+|||+..++-+.
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 3322 1 235699999877664 00 0 0 146789999999998876655443
No 282
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.11 E-value=0.0059 Score=45.40 Aligned_cols=109 Identities=15% Similarity=-0.039 Sum_probs=65.2
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--hhc-CCCeeEEeCCCCC---cCCCCCc-
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--KAC-YKNIEWVEGDALD---LPFSDCF- 106 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~~~-~~~i~~~~~d~~~---~~~~~~~- 106 (222)
...+|||+|+|+|.-...++.. .+.+|...|..... +..+....... ... ...+.+...+... ..+..+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~--~~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL--LGAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH--hcceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 3557999999999666666654 36688888874432 22222111100 000 0134444333322 2222233
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|+|++.-++.+......+..-++..|..++.+++...-
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 899999999888877788888888888888865554433
No 283
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=97.07 E-value=0.0059 Score=46.01 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=37.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCC-------CcEEEEeCChhHHHHHhcchhh
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQ-------GKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~-------~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
..+|+|+|+|+|.++..+++.+... .+++.+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3699999999999999998877533 3799999999998888887754
No 284
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.03 E-value=0.014 Score=42.09 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=63.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhhhh----------------------------
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVS---------------------------- 83 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~---------------------------- 83 (222)
..+-++.|-+||.|.+...+.-..+. -..+++-|+++++++.|++++.-..
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 44568999999999997665433212 2379999999999999987764100
Q ss_pred -----------hhcCCCeeEEeCCCCCcC-----CCCCceeEEEEcccccCccc---------HHHHHHHHhcccCCCcE
Q 027517 84 -----------KACYKNIEWVEGDALDLP-----FSDCFFDAITMGYGLRNVVD---------KRKALEESFRVLKPGSR 138 (222)
Q Consensus 84 -----------~~~~~~i~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~---------~~~~l~~~~~~l~~gG~ 138 (222)
.+........+.|+.+.. ......|+|+.-....++.+ ..++|..+..+|.+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 111233567778887721 11223699998666554421 46899999999966666
Q ss_pred EEEEe
Q 027517 139 ISVLD 143 (222)
Q Consensus 139 l~i~~ 143 (222)
+.+++
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66643
No 285
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=97.02 E-value=0.00067 Score=43.39 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=28.0
Q ss_pred ceeEEEEcccccCc------ccHHHHHHHHhcccCCCcEEEEE
Q 027517 106 FFDAITMGYGLRNV------VDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 106 ~~D~v~~~~~l~~~------~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+||+|+|..+--++ +....+++++.+.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998774433 23578999999999999999763
No 286
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.02 E-value=0.0064 Score=52.41 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=63.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh------CC-----CCcEEEEeCCh---hHHHHHhcc-----------hhhhh---h
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV------GS-----QGKVIGLDFSK---NQLSMASSR-----------QDLVS---K 84 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~~~~~D~~~---~~~~~~~~~-----------~~~~~---~ 84 (222)
.+.-+|+|+|-|+|.......+.+ ++ ..+++.+|..| +.+..+... ....+ .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344699999999999887776655 12 23788999644 333322211 00000 0
Q ss_pred --------hcCCCeeEEeCCCCCc-CCCCCceeEEEEcc-cccCcccH--HHHHHHHhcccCCCcEEE
Q 027517 85 --------ACYKNIEWVEGDALDL-PFSDCFFDAITMGY-GLRNVVDK--RKALEESFRVLKPGSRIS 140 (222)
Q Consensus 85 --------~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~-~l~~~~~~--~~~l~~~~~~l~~gG~l~ 140 (222)
...-++++..+|+.+. +.-...+|+++.-. +-..-|+. ..+++.+.+.++|||++.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 0001344666777652 21124589999743 22222332 788999999999999986
No 287
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=97.01 E-value=0.0014 Score=50.03 Aligned_cols=111 Identities=19% Similarity=0.156 Sum_probs=74.1
Q ss_pred CeEEEecCCCChhHHHHHHHhC-------------------CCCcEEEEeCCh--hHHHHHhcchhhh------------
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVG-------------------SQGKVIGLDFSK--NQLSMASSRQDLV------------ 82 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~-------------------~~~~~~~~D~~~--~~~~~~~~~~~~~------------ 82 (222)
.+||.||.|.|.-...++..+. +...++.+|+.+ ..++.........
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999888777776650 113799999865 3333322222111
Q ss_pred --hhhcCCCeeEEeCCCCCcCCC-------CCceeEEEEcccccCc-----ccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 83 --SKACYKNIEWVEGDALDLPFS-------DCFFDAITMGYGLRNV-----VDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 83 --~~~~~~~i~~~~~d~~~~~~~-------~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
.....-++.|.+.|+.....+ .+..++|...+.++.+ +...++|.++-..++||..|+|+|...
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 112224678899998875432 1246888877776644 345788999999999999999987543
No 288
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.98 E-value=0.0032 Score=50.13 Aligned_cols=106 Identities=21% Similarity=0.187 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~ 112 (222)
.+.+|||.=||+|.=+.+.+..++...+|+.-|+++++++..+++....+... .++++...|+..+- .....||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-ERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-CCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-ceEEEehhhHHHHhhhccccCCEEEe
Confidence 34589999999999999998886444589999999999999999976655432 25788888887642 23567999976
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+-.+..++....+.++.||.|.++..
T Consensus 128 ----DPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 ----DPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ----CCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 2334567788889999999999988653
No 289
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0034 Score=47.38 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=80.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh-hcCCCeeEEeCCCCCcC--CCCCce
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK-ACYKNIEWVEGDALDLP--FSDCFF 107 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~--~~~~~~ 107 (222)
..+..++||-+|.|.|...+...++ ..-.++..+|++...++..++....... -..+++.+..+|-..+- ...++|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 4456779999999999999888877 4445899999999999999987654221 11167888888866532 335789
Q ss_pred eEEEEcccccCccc----HHHHHHHHhcccCCCcEEEEEe
Q 027517 108 DAITMGYGLRNVVD----KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 108 D~v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|+|+.-..=--.|- ....+..+.+.||+||++....
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99997332111111 2567888999999999987753
No 290
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.77 E-value=0.05 Score=42.00 Aligned_cols=172 Identities=11% Similarity=-0.045 Sum_probs=101.9
Q ss_pred hHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 20 RIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+.+...+...+... ...|+-+|||--.-..++-. +++..|+-+|. |+.++.-++.+...+........++..|+.+
T Consensus 79 r~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~--~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 79 RYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDW--PKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHhc-ccEEEEeccccccceeecCC--CCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 34444455555444 67899999998666555542 22456777775 7777777777765543333478899999984
Q ss_pred cC---------CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhH-HHHHHhhcccccc
Q 027517 100 LP---------FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTA-IQEWMIDNVVVPV 167 (222)
Q Consensus 100 ~~---------~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~ 167 (222)
.. +.....-++++-+++.+++. ..+++..+.....||..++.............. ............
T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 233 (297)
T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDL- 233 (297)
T ss_pred cchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccc-
Confidence 21 22344567888888888854 578899999999998888765431111100000 101000000000
Q ss_pred cccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEE
Q 027517 168 ASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKH 207 (222)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 207 (222)
.............+++..+.+.||.....
T Consensus 234 -----------~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 234 -----------DRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred -----------ccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 00001112345789999999999988775
No 291
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=96.77 E-value=0.2 Score=40.09 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=72.6
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhC------CCCcEEEEeC----ChhHHHHHhcchhhhhhhcCCCeeEE
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG------SQGKVIGLDF----SKNQLSMASSRQDLVSKACYKNIEWV 93 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------~~~~~~~~D~----~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (222)
+.+++.+...+.-+|+|+|.|.|.-...|.+.+. |..++|+++. +...++...+++........-..+|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 3566666666777999999999976665555442 2338999999 78888888888765443322334444
Q ss_pred eC---CCCCc-----CCCCCceeEEEEcccccCccc--------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 94 EG---DALDL-----PFSDCFFDAITMGYGLRNVVD--------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 94 ~~---d~~~~-----~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.. +.+++ ....+..=+|.+.+.+|++.+ ...+|+.+ +.|+|.-. ++++..
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vv-v~~E~e 245 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVV-VLVEQE 245 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEE-EEEeec
Confidence 42 23332 122233445556677788852 23455544 47888744 444443
No 292
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.69 E-value=0.048 Score=42.03 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=72.2
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC--CCCc----
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD--ALDL---- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d--~~~~---- 100 (222)
..-...++.+||-+|+|+ |-.+...++.++. .+|..+|+++.-++.|++ +... .+...... ..++
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga~------~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGAT------VTDPSSHKSSPQELAELV 234 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hCCe------EEeeccccccHHHHHHHH
Confidence 344567899999999998 7777888888743 489999999999999998 3211 11111111 1111
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCc
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~ 150 (222)
......+|+.+-+..++ ..++.....+++||.+++..+......
T Consensus 235 ~~~~g~~~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~~~~ 280 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAEEIQ 280 (354)
T ss_pred HhhccccCCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCCccc
Confidence 12223488888655543 345556778899999988887765443
No 293
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.68 E-value=0.033 Score=44.78 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=69.5
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC----C-c-C
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL----D-L-P 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~----~-~-~ 101 (222)
.....++.+||..|||. |..+..+++..+. .+++++|.+++..+.+++... ..++...-. + + .
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~---------~~vi~~~~~~~~~~~l~~ 248 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLG---------AETINFEEVDDVVEALRE 248 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCC---------cEEEcCCcchHHHHHHHH
Confidence 34556788999999988 8888889888532 259999999998888877521 122211111 1 1 1
Q ss_pred C-CCCceeEEEEccc---------------ccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 F-SDCFFDAITMGYG---------------LRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~-~~~~~D~v~~~~~---------------l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
. ..+.+|+|+-.-. ++...+....+..+.+.++++|+++....
T Consensus 249 ~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 249 LTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred HcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 1 2235888876432 11223446678899999999999987653
No 294
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=96.68 E-value=0.018 Score=40.75 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHh---CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-------CC
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-------FS 103 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~ 103 (222)
.+..|+|+|.--|..+..++... +...+|.++|++-..++.+-... ++|.+++++..+.. ..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~--------p~i~f~egss~dpai~eqi~~~~ 140 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV--------PDILFIEGSSTDPAIAEQIRRLK 140 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC--------CCeEEEeCCCCCHHHHHHHHHHh
Confidence 45689999999988776665432 33468999999876655544332 69999999987742 12
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
++.--+.++..+-|+....-+.++-+..+|.-|-++++.+..-..
T Consensus 141 ~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 141 NEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 222345566677777766667788888899999999887765443
No 295
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.012 Score=45.90 Aligned_cols=55 Identities=9% Similarity=0.004 Sum_probs=41.9
Q ss_pred HHhhCCCCCCeEEEecCCCChhHHHHHHHhC-------CCCcEEEEeCChhHHHHHhcchhh
Q 027517 27 VSWSGAKTGDNVLDVCCGSGDLSFLLSEQVG-------SQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 27 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
++....++...++|+|+|.|.++..+++.+. ...++..+++|++..+.-++.+..
T Consensus 70 wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 70 WQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3344555566899999999999988877652 245899999999988887777643
No 296
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.64 E-value=0.002 Score=48.40 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=63.1
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhc-------chhhhhhhcCCCeeEEeCCCCCcCC--C
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS-------RQDLVSKACYKNIEWVEGDALDLPF--S 103 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~d~~~~~~--~ 103 (222)
..+++|||+|||.|-........ ....+...|++.+.+....- .+.....+...-..+...++.+..+ .
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred ecCceeEecCCcccccchhhhhh--ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhc
Confidence 35789999999999888877765 23689999998887732110 1100000000011222221112111 1
Q ss_pred C-CceeEEEEcccccCcccHHHH-HHHHhcccCCCcEEEE
Q 027517 104 D-CFFDAITMGYGLRNVVDKRKA-LEESFRVLKPGSRISV 141 (222)
Q Consensus 104 ~-~~~D~v~~~~~l~~~~~~~~~-l~~~~~~l~~gG~l~i 141 (222)
. ..||+|.++-.+........+ .......++++|.+++
T Consensus 193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 1 278999998888877666555 5666677888888765
No 297
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.52 E-value=0.047 Score=43.29 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=68.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC-C----c-CC-CC
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL-D----L-PF-SD 104 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~----~-~~-~~ 104 (222)
.++.+|+=+|||+ |-.+..+++.++ ..+++.+|.+++-++.|++... ......... + . .. ..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g---------~~~~~~~~~~~~~~~~~~~t~g 236 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGG---------ADVVVNPSEDDAGAEILELTGG 236 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCC---------CeEeecCccccHHHHHHHHhCC
Confidence 3444899999998 777777777753 3589999999999999998542 111111111 1 0 11 12
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKST 148 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~ 148 (222)
..+|+++=... ....+..+.+.++|||.+++.-.....
T Consensus 237 ~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 237 RGADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 35899985443 245788899999999999888776544
No 298
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.39 E-value=0.017 Score=47.80 Aligned_cols=97 Identities=19% Similarity=0.094 Sum_probs=64.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC------------
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD------------ 99 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~------------ 99 (222)
.++.+|+=+|+|. |..+..+++.+ +..++++|.+++.++.++..- ..++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lG----------a~~v~v~~~e~g~~~~gYa~~~ 229 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMG----------AEFLELDFKEEGGSGDGYAKVM 229 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcC----------CeEEeccccccccccccceeec
Confidence 3568999999997 56667777775 457999999999888877631 1121111100
Q ss_pred -----------cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 100 -----------LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 100 -----------~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
++..-..+|+|+....+.--+.+.-+.+++.+.+|||+.++-
T Consensus 230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111124589998877555444555678888999999988664
No 299
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.22 E-value=0.0044 Score=39.43 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=27.1
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCCh
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSK 69 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~ 69 (222)
+....+|||||+|-+...|... +..-.|+|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 4568999999999999888855 66889999744
No 300
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.12 E-value=0.071 Score=39.91 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCeEEEecCCCChhHHHHHHHh---C-CCCcEEEEeCChh--------------------------HHHHHhcchhhhhh
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV---G-SQGKVIGLDFSKN--------------------------QLSMASSRQDLVSK 84 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~---~-~~~~~~~~D~~~~--------------------------~~~~~~~~~~~~~~ 84 (222)
...|+|+||-.|..+..+...+ + ++.+++++|.-+. .++..++++.+.+.
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 3489999999998776554332 2 3447999983221 23333344433221
Q ss_pred hcCCCeeEEeCCCCCc-C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 85 ACYKNIEWVEGDALDL-P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 85 ~~~~~i~~~~~d~~~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
..+++.++.+.+.+. | .+.+++-++.+- ....+....+|+.++..|.|||++++-++..
T Consensus 155 -~~~~v~~vkG~F~dTLp~~p~~~IAll~lD--~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 155 -LDDNVRFVKGWFPDTLPDAPIERIALLHLD--CDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp -SSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred -CcccEEEECCcchhhhccCCCccEEEEEEe--ccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 115789999998763 3 222333332222 1222445788999999999999999977665
No 301
>PHA01634 hypothetical protein
Probab=96.08 E-value=0.049 Score=35.95 Aligned_cols=45 Identities=9% Similarity=0.013 Sum_probs=37.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 80 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (222)
.+++|+|||++-|..+..++-+ + ...|++++.++...+..++...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-G-AK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-G-ASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-C-ccEEEEeccCHHHHHHHHHHhh
Confidence 4679999999999999999866 2 2379999999999988887653
No 302
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.049 Score=43.96 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=66.9
Q ss_pred CCeEEEecCCCChh--HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC--cCCC-CCceeE
Q 027517 35 GDNVLDVCCGSGDL--SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD--LPFS-DCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~--~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~~D~ 109 (222)
...++|+|+|.|.- +...+-. +....+..||.+..|+............. ....+...-... .|.+ ...||+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr-~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~--g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWR-QTKREYSLVDRSRAMLKQSEKNLRDGSHI--GEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcc-cccceeEeeccchHHHHHHHHhhcChhhc--CchhccccchhcccCCCCcccceee
Confidence 45788888876543 3333322 22447999999999999888776441100 111111101111 2333 344999
Q ss_pred EEEcccccCcccH----HHHHHHHhcccCCCcEEEEEecCCC
Q 027517 110 ITMGYGLRNVVDK----RKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 110 v~~~~~l~~~~~~----~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
|++.+.++++.+. ...-...++..++|+.+++++...+
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9999999998643 2233445567899999999887654
No 303
>PRK11524 putative methyltransferase; Provisional
Probab=96.01 E-value=0.016 Score=44.50 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=40.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD 80 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (222)
..+++.|||.-||+|..+....+. +.+++|+|++++..+.+++++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHH
Confidence 367889999999999998876654 5689999999999999999974
No 304
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.95 E-value=0.028 Score=42.99 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=52.2
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC--CCceeEEEEcc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DCFFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~v~~~~ 114 (222)
+++|+-||.|..+.-+.+. + -..+.++|+++.+.+..+.+.. .. .+..|+.++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999998888765 2 2257899999999988877752 22 566777765422 34699999877
Q ss_pred cccCc
Q 027517 115 GLRNV 119 (222)
Q Consensus 115 ~l~~~ 119 (222)
....+
T Consensus 71 PCq~f 75 (275)
T cd00315 71 PCQPF 75 (275)
T ss_pred CChhh
Confidence 65544
No 305
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.93 E-value=0.067 Score=42.22 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=62.2
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCcee
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 108 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (222)
...++.+||-.|||. |..+..+++.. +. +++++|.+++.++.+++.-... -+.....+..+.....+.+|
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~--G~~~Vi~~~~~~~~~~~a~~lGa~~------vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTL--GAAEIVCADVSPRSLSLAREMGADK------LVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHHcCCcE------EecCCcccHHHHhccCCCCC
Confidence 345678999899875 66677777774 44 6899999999888887642100 00110111111111123488
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|+-... . ...++...+.+++||+++.....
T Consensus 238 ~vid~~G-----~-~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 238 VSFEVSG-----H-PSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred EEEECCC-----C-HHHHHHHHHHhhcCCEEEEEccC
Confidence 8875432 1 34567788899999999887543
No 306
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.89 E-value=0.14 Score=33.43 Aligned_cols=86 Identities=22% Similarity=0.219 Sum_probs=54.7
Q ss_pred CCCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEEEEccccc
Q 027517 43 CGSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAITMGYGLR 117 (222)
Q Consensus 43 ~G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~~~~~l~ 117 (222)
||.|..+..+++.+.... +++.+|.+++..+.++.. .+.++.+|..+.. ..-.+.|.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 566778887777765555 799999999988887755 4778999988742 22346787777442
Q ss_pred CcccHHHHHHHHhcccCCCcEEEE
Q 027517 118 NVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 118 ~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
-......+....+-+.|...++.
T Consensus 72 -~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 72 -DDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp -SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred -CHHHHHHHHHHHHHHCCCCeEEE
Confidence 11223334444455666667655
No 307
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.80 E-value=0.032 Score=43.85 Aligned_cols=46 Identities=28% Similarity=0.214 Sum_probs=37.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
...+-..|+|+|+|.|.++..+.-.+ +..|.+||-|....+.|++.
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 34566799999999999999988654 67999999998777776643
No 308
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.79 E-value=0.019 Score=42.22 Aligned_cols=43 Identities=28% Similarity=0.439 Sum_probs=33.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhc
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS 77 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (222)
..++..|||.-||+|..+....+. +.+++|+|++++..+.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 367889999999999999877654 5689999999999988763
No 309
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.76 E-value=0.074 Score=41.73 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=75.9
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEEc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMG 113 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 113 (222)
..+|+|.=||+|-=..+++...+ ..+++.-|++|++.+.++++...+.. .+...+..|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~---~~~~v~n~DAN~lm~~~~~~fd~IDi- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSG---EDAEVINKDANALLHELHRAFDVIDI- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCc---ccceeecchHHHHHHhcCCCccEEec-
Confidence 67999999999999999988853 33899999999999999999876522 3566666777664322 356888764
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..+-.+..+++...+.++.||.+-++..
T Consensus 128 ---DPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 128 ---DPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred ---CCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 2334456677777788888999988643
No 310
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.70 E-value=0.23 Score=38.87 Aligned_cols=96 Identities=25% Similarity=0.319 Sum_probs=62.5
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-----CCC
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-----PFS 103 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-----~~~ 103 (222)
...++.+||..|+|. |..+..+++.. +.++++++.+++..+.+++.- +..+..+-.. . ...
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g----------~~~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELG----------ADEVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhC----------CCEEEcCCCcCHHHHHHHhc
Confidence 456778899888764 77788888875 567999999998887775421 1111111111 0 122
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+.+|+++.+... ...++.+.+.|+++|.++....
T Consensus 230 ~~~~D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 230 GGGFDVIFDFVGT------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCCceEEEECCCC------HHHHHHHHHHhhcCCEEEEECC
Confidence 3568988854321 3467788899999999987644
No 311
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.59 E-value=0.064 Score=43.07 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHhhCCCC------CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCe
Q 027517 17 GQHRIWKRMAVSWSGAKT------GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI 90 (222)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~------~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i 90 (222)
.....++..+...+..++ ...|||||+|||-++....+.. .-.|++++.-..|.+.|++-..+.+.+ ++|
T Consensus 43 dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~S--dkI 118 (636)
T KOG1501|consen 43 DRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMS--DKI 118 (636)
T ss_pred cccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCc--cce
Confidence 334455554444443222 2368999999999998888773 337999999999999999877666554 677
Q ss_pred eEEeCCCCCcCC-CCCceeEEEE
Q 027517 91 EWVEGDALDLPF-SDCFFDAITM 112 (222)
Q Consensus 91 ~~~~~d~~~~~~-~~~~~D~v~~ 112 (222)
.++.--..+... +....|+++.
T Consensus 119 ~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 119 NVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eeeccccceeeecCcchhhhhhH
Confidence 777655444321 1123455553
No 312
>PRK13699 putative methylase; Provisional
Probab=95.59 E-value=0.075 Score=39.39 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=33.8
Q ss_pred eEEeCCCCCc--CCCCCceeEEEEcccccC---------c--c---c-HHHHHHHHhcccCCCcEEEE
Q 027517 91 EWVEGDALDL--PFSDCFFDAITMGYGLRN---------V--V---D-KRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 91 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~---------~--~---~-~~~~l~~~~~~l~~gG~l~i 141 (222)
+++++|+.+. .++++++|+|++.-...- + . + ....+.+++++|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4556676553 456677888887544320 0 0 1 25788999999999998876
No 313
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.57 E-value=0.039 Score=36.66 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=49.8
Q ss_pred CeeEEeCCCCC-cCCCCCceeEEEEcc-cccCccc--HHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhccc
Q 027517 89 NIEWVEGDALD-LPFSDCFFDAITMGY-GLRNVVD--KRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVV 164 (222)
Q Consensus 89 ~i~~~~~d~~~-~~~~~~~~D~v~~~~-~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (222)
.+.+..+|+.+ ++.-...+|+++.-. +-..-|+ ...+++.+++.++|||.+.-.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty---------------------- 89 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY---------------------- 89 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe----------------------
Confidence 45677788765 222236799999854 2222233 278999999999999988531
Q ss_pred ccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCCeEEEEeeec
Q 027517 165 VPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGFSRAKHYELS 211 (222)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 211 (222)
-+...+++.|+++||.+.+...+.
T Consensus 90 -----------------------s~a~~Vr~~L~~aGF~v~~~~g~g 113 (124)
T PF05430_consen 90 -----------------------SSAGAVRRALQQAGFEVEKVPGFG 113 (124)
T ss_dssp -------------------------BHHHHHHHHHCTEEEEEEE-ST
T ss_pred -----------------------echHHHHHHHHHcCCEEEEcCCCC
Confidence 123467899999999987766554
No 314
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.49 E-value=0.18 Score=33.54 Aligned_cols=85 Identities=24% Similarity=0.317 Sum_probs=59.2
Q ss_pred CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C-CCCCceeEEEEcccccC
Q 027517 45 SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P-FSDCFFDAITMGYGLRN 118 (222)
Q Consensus 45 ~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~ 118 (222)
-|..+..+++.. +.+++++|.+++-++.+++.- .-.++..+-.++ . .+.+.+|+|+-+-.
T Consensus 2 vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~~G---------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 2 VGLMAIQLAKAM--GAKVIATDRSEEKLELAKELG---------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTT---------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred hHHHHHHHHHHc--CCEEEEEECCHHHHHHHHhhc---------ccccccccccccccccccccccccceEEEEecC---
Confidence 467788888886 379999999999998888752 112232222211 1 23347999986443
Q ss_pred cccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 119 VVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 119 ~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
-...++...+.++++|++++.....
T Consensus 68 ---~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ---SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1567888999999999999887765
No 315
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=95.42 E-value=0.11 Score=37.03 Aligned_cols=107 Identities=12% Similarity=0.081 Sum_probs=60.8
Q ss_pred hHHHHHHHHhhCCCCCC-eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCC
Q 027517 20 RIWKRMAVSWSGAKTGD-NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDAL 98 (222)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (222)
+.+...+.+.+...++. .|+.+|||--.....+.... ++..++-+|. |++++..++.+.........+..++..|+.
T Consensus 63 ~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 140 (183)
T PF04072_consen 63 RYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLR 140 (183)
T ss_dssp HHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTT-TTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TT
T ss_pred HHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccc-cceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEecccc
Confidence 34444455555433444 89999999988887777542 2456777775 566666666665442211134667889988
Q ss_pred CcC---------CCCCceeEEEEcccccCccc--HHHHHHH
Q 027517 99 DLP---------FSDCFFDAITMGYGLRNVVD--KRKALEE 128 (222)
Q Consensus 99 ~~~---------~~~~~~D~v~~~~~l~~~~~--~~~~l~~ 128 (222)
+.. +.....-++++-+++.+++. ...+++.
T Consensus 141 ~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 141 DDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp SHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHH
T ss_pred chhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHH
Confidence 621 23445678888888888853 3344443
No 316
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.016 Score=46.96 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=78.3
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----CCCCCceeE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----PFSDCFFDA 109 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~ 109 (222)
++.+|||.=|++|--+++.++.++...++++.|.++..++..+++....... ..++....|+..+ +.....||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~--~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE--DIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch--hhcccccchHHHHHHhccccccccce
Confidence 4568999999999999999999865568999999999999998887654322 3456666676543 222467888
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|=. ..+-.+..+|+...+.++.||.|.++..
T Consensus 187 IDL----DPyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 187 IDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred Eec----CCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 865 2233456788888889999999988653
No 317
>PRK13699 putative methylase; Provisional
Probab=95.25 E-value=0.051 Score=40.26 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=40.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (222)
.++..|||.-||+|.......+. +.+++|+|++++..+.+.+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 57889999999999998876654 568999999999999999887543
No 318
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.14 E-value=0.074 Score=40.83 Aligned_cols=99 Identities=14% Similarity=0.078 Sum_probs=71.8
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEc
Q 027517 35 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMG 113 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 113 (222)
+.+|.-||.|. |..+..++-- -++.|+.+|++.+-+......+. .++.....+...+...-.+.|+++..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n~~rl~~ldd~f~-------~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLNIDRLRQLDDLFG-------GRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CccEEEECCccccchHHHHHhc--cCCeeEEEecCHHHHhhhhHhhC-------ceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 45788889886 7777777644 47799999999887776665542 46777776666554334568999875
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
-.+---..+.-+.+++.+.||||+.++=+
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 55544556778889999999999988643
No 319
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.04 E-value=0.58 Score=36.74 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=60.7
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCcee
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFD 108 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (222)
....++.+||-.|+|. |..+..+++.. +.++++++.+++-++.+++.-. -.++ +..+. ..+.+|
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga---------~~vi--~~~~~--~~~~~d 225 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGA---------ASAG--GAYDT--PPEPLD 225 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCC---------ceec--ccccc--Ccccce
Confidence 4567788999999764 55566777764 5579999999888877766421 0111 11111 123477
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+++-.... ...+....+.+++||++++....
T Consensus 226 ~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~~ 256 (329)
T TIGR02822 226 AAILFAPA------GGLVPPALEALDRGGVLAVAGIH 256 (329)
T ss_pred EEEECCCc------HHHHHHHHHhhCCCcEEEEEecc
Confidence 66543221 23677888899999999886653
No 320
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.01 E-value=1.1 Score=33.67 Aligned_cols=96 Identities=28% Similarity=0.332 Sum_probs=60.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----CCCCCc
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----PFSDCF 106 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~ 106 (222)
.++.+||..|+|+ |..+..+++.. +.++++++.+++..+.++..- ...++...-.+. ....+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELG---------ADHVIDYKEEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhC---------CceeccCCcCCHHHHHHHhcCCC
Confidence 6788999999986 66777777774 468999999887766664431 001111110110 112356
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+|+++.+..- ...+..+.+.++++|.++.....
T Consensus 202 ~d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 202 ADVVIDAVGG------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CCEEEECCCC------HHHHHHHHHhcccCCEEEEEccC
Confidence 8999864331 14566777888999998876543
No 321
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.92 E-value=0.22 Score=39.48 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=77.7
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchh-------hhhhhcCCCeeEEeCC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQD-------LVSKACYKNIEWVEGD 96 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~d 96 (222)
.-+.+.+...+++...|+|+|-|......+... ....-.|+++.+..-+.+..+.. ..+.. ...+..+.++
T Consensus 182 ~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~-~~~~~~i~gs 259 (419)
T KOG3924|consen 182 RSIVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK-PNKIETIHGS 259 (419)
T ss_pred HHHHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC-cCceeecccc
Confidence 345566778899999999999999998888763 23356777766544443332211 11211 2457788888
Q ss_pred CCCcCC---CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 97 ALDLPF---SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 97 ~~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
..+... -....++|+++++... ++...-+.++..-+++|-+++-...-.+
T Consensus 260 f~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred cCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 776431 1245788888887543 3334445578888899988876655544
No 322
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.62 E-value=0.42 Score=37.74 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=59.2
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
..++.+||-+|||. |..+..+++......+++++|.+++-++.+++ . + ..... + +.. ....+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~-----~~~~~--~--~~~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D-----ETYLI--D--DIP-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C-----ceeeh--h--hhh-hccCCcEE
Confidence 46788999999876 44555666642223579999999888777764 1 1 11111 1 111 11237888
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+=.-.- +.....+....+.++++|++++.-..
T Consensus 227 iD~~G~---~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 227 FECVGG---RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred EECCCC---CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 743321 01245677888899999999876543
No 323
>PTZ00357 methyltransferase; Provisional
Probab=94.37 E-value=0.27 Score=42.08 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=63.9
Q ss_pred eEEEecCCCChhHHHHHHHh---CCCCcEEEEeCChhHHHHHhcch-hhhhhh-----cCCCeeEEeCCCCCcCCCC---
Q 027517 37 NVLDVCCGSGDLSFLLSEQV---GSQGKVIGLDFSKNQLSMASSRQ-DLVSKA-----CYKNIEWVEGDALDLPFSD--- 104 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~-~~~~~~-----~~~~i~~~~~d~~~~~~~~--- 104 (222)
.|+=+|+|-|-+.....+.. +-..+++++|-++........+. ....+. ....|+++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999998876555443 33458999999966443333332 111121 0145899999998864321
Q ss_pred --------CceeEEEE--cccccCcccHHHHHHHHhcccCC----CcE
Q 027517 105 --------CFFDAITM--GYGLRNVVDKRKALEESFRVLKP----GSR 138 (222)
Q Consensus 105 --------~~~D~v~~--~~~l~~~~~~~~~l~~~~~~l~~----gG~ 138 (222)
+++|+|++ .+++..-+--+..|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36999996 44444333235667777777776 776
No 324
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.35 E-value=0.92 Score=36.04 Aligned_cols=99 Identities=19% Similarity=0.320 Sum_probs=61.6
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC---CCCC-c-C-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DALD-L-P- 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~-~-~- 101 (222)
....++.+||-.|+|. |..+..+++.. +. +++++|.+++..+.+++.-. -.++.. +..+ + .
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~~Ga---------~~~i~~~~~~~~~~i~~~ 240 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWAREFGA---------THTVNSSGTDPVEAIRAL 240 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcCC---------ceEEcCCCcCHHHHHHHH
Confidence 3456788999999865 66677777774 45 49999999988888765311 111211 1111 0 0
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+|+-.-. . ...++...+.+++||++++....
T Consensus 241 ~~~~g~d~vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 241 TGGFGADVVIDAVG-----R-PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred hCCCCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEECCC
Confidence 12235888875332 1 23566677889999999876543
No 325
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.17 E-value=0.38 Score=38.18 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=59.6
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeC---ChhHHHHHhcchhhhhhhcCCCeeEEe---CCCCCcCCCC
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDF---SKNQLSMASSRQDLVSKACYKNIEWVE---GDALDLPFSD 104 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~ 104 (222)
..++.+||-+|+|. |..+..+++.. +.++++++. +++-++.+++.- ...+. .+..+. ...
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~G----------a~~v~~~~~~~~~~-~~~ 236 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEELG----------ATYVNSSKTPVAEV-KLV 236 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcC----------CEEecCCccchhhh-hhc
Confidence 35678999999875 66777788775 458999986 566666665431 11111 111110 112
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
..+|+|+-... . ...+....+.++++|.+++.....
T Consensus 237 ~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 237 GEFDLIIEATG-----V-PPLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred CCCCEEEECcC-----C-HHHHHHHHHHccCCcEEEEEecCC
Confidence 35888886442 1 235677888999999988765443
No 326
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=94.14 E-value=0.16 Score=42.66 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=63.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----C----CC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----P----FS 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~----~~ 103 (222)
+.++..|||+||.+|.++...++.++.+.-|+|+|+-|-- ..+++...+.|++.. + ..
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHHHHHHHHHHH
Confidence 3577799999999999999999998877789999986621 114566666666542 1 11
Q ss_pred CCceeEEEEcccc----cCccc-------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 104 DCFFDAITMGYGL----RNVVD-------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 104 ~~~~D~v~~~~~l----~~~~~-------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.-+.|+|+.-+.- .+..+ ....++-....|+.||.+ ++..+
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f-vtkvf 159 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF-VTKVF 159 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc-ccccc
Confidence 2345888753321 11122 134466666788899995 44333
No 327
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.88 E-value=0.49 Score=31.33 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=49.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~ 112 (222)
+..+|+|+|-|.-......++.. +..++++|+.+. .+. ..+.++..|+.+.... -+..|+|++
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~-----------~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP-----------EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc-----------cCcceeeecccCCCHHHhcCCcEEEE
Confidence 34599999999866655444443 579999999886 111 3678888898874321 135799998
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
.. --++....+.++.+.+ |.-+++..+...
T Consensus 77 iR---PP~El~~~il~lA~~v--~adlii~pL~~e 106 (127)
T PF03686_consen 77 IR---PPPELQPPILELAKKV--GADLIIRPLGGE 106 (127)
T ss_dssp ES-----TTSHHHHHHHHHHH--T-EEEEE-BTTB
T ss_pred eC---CChHHhHHHHHHHHHh--CCCEEEECCCCC
Confidence 54 3445555666666533 567777666543
No 328
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.88 E-value=0.17 Score=41.22 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=72.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-------CCCCCce
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-------PFSDCFF 107 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~ 107 (222)
+.++|-+|-|.|.+...+...+ +..++++++++|++++.+.+++..... .+..+...|..+. ...+..|
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~---~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQS---DRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred cCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhh---hhhhhhHhhchHHHHHHhhccccccCC
Confidence 4578888888899988887765 567999999999999999998754322 2233333333321 1134568
Q ss_pred eEEEEcc---cccCccc------HHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 108 DAITMGY---GLRNVVD------KRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 108 D~v~~~~---~l~~~~~------~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
|++..-- -.|-+.. ...++..++..|.|-|.+++.-..+.
T Consensus 372 dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 372 DVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred cEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 9888411 1222211 25679999999999999966544443
No 329
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.70 E-value=0.53 Score=35.70 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=66.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC---CCceeEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS---DCFFDAI 110 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v 110 (222)
.++.|+=+| .-.++...+..-+...++..+|+++..++..++-....+. .+++.+..|+.+ |+| .++||+.
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~---~~ie~~~~Dlr~-plpe~~~~kFDvf 225 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY---NNIEAFVFDLRN-PLPEDLKRKFDVF 225 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc---cchhheeehhcc-cChHHHHhhCCee
Confidence 456788888 3333322222213334899999999999998887765554 579999999887 333 3679988
Q ss_pred EEcccccCcccHHHHHHHHhcccCCC---cEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPG---SRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~g---G~l~i~~~~ 145 (222)
+.-- .+.++....++.+=...||.. |++.++...
T Consensus 226 iTDP-peTi~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 226 ITDP-PETIKALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred ecCc-hhhHHHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 7632 233334455566656667665 667665433
No 330
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.58 E-value=1.1 Score=35.74 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=61.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC----c-CC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----L-PF 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~-~~ 102 (222)
....++.+||=.|+|. |..+..+++.. +. +++++|.+++.++.+++.-. ..++...-.+ + ..
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~~Ga---------~~~i~~~~~~~~~~i~~~ 255 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARELGA---------TATVNAGDPNAVEQVREL 255 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHHcCC---------ceEeCCCchhHHHHHHHH
Confidence 3456788899899875 66667777764 55 69999999988888765411 1112111111 1 01
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..+.+|+|+-...- ...+....+.++++|+++.....
T Consensus 256 ~~~g~d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 256 TGGGVDYAFEMAGS------VPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred hCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEccC
Confidence 12258888853221 34566777889999998876543
No 331
>PRK11524 putative methyltransferase; Provisional
Probab=93.55 E-value=0.084 Score=40.59 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=38.6
Q ss_pred CeeEEeCCCCCc--CCCCCceeEEEEcccccC------c----------ccHHHHHHHHhcccCCCcEEEEE
Q 027517 89 NIEWVEGDALDL--PFSDCFFDAITMGYGLRN------V----------VDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 89 ~i~~~~~d~~~~--~~~~~~~D~v~~~~~l~~------~----------~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+..++++|+.+. .++++++|+|++.-.+.. . .-....+..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788888773 355678999998654321 0 00246889999999999999875
No 332
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.45 E-value=1.2 Score=34.14 Aligned_cols=98 Identities=18% Similarity=0.091 Sum_probs=60.2
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCC-c-C-CCC
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALD-L-P-FSD 104 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~-~-~-~~~ 104 (222)
...++.+||-.|+|+ |..+..+++.. +.+ ++++|.+++-++.+++.-.. .++. .+..+ . . ...
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~~Ga~---------~~i~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALSFGAT---------ALAEPEVLAERQGGLQNG 185 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcCCc---------EecCchhhHHHHHHHhCC
Confidence 345788999999875 66667777774 445 88999988887777654210 1111 01000 0 0 112
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
..+|+|+-... . ...++...+.++++|+++.....
T Consensus 186 ~g~d~vid~~G-----~-~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 186 RGVDVALEFSG-----A-TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCCCEEEECCC-----C-hHHHHHHHHHhcCCCEEEEeccC
Confidence 34888875322 1 34677788899999999876643
No 333
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.39 E-value=0.18 Score=37.04 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=52.2
Q ss_pred CCCeEEEecCCCChhHHHH-HHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCC----cCCCCCce
Q 027517 34 TGDNVLDVCCGSGDLSFLL-SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALD----LPFSDCFF 107 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~----~~~~~~~~ 107 (222)
+..++||||.|.-..--.+ ... -+.+.+|.|+++..++.|+......+.- ...+..... |-.. +.-.++.|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e--YgwrfvGseid~~sl~sA~~ii~~N~~l-~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE--YGWRFVGSEIDSQSLSSAKAIISANPGL-ERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCccccccccccee--ecceeecCccCHHHHHHHHHHHHcCcch-hhheeEEeccCcccccccccccccee
Confidence 3457899998864332111 222 2568999999999999999877654211 123444332 2111 11235789
Q ss_pred eEEEEcccccCcc
Q 027517 108 DAITMGYGLRNVV 120 (222)
Q Consensus 108 D~v~~~~~l~~~~ 120 (222)
|++.|+-.+|.-.
T Consensus 155 d~tlCNPPFh~s~ 167 (292)
T COG3129 155 DATLCNPPFHDSA 167 (292)
T ss_pred eeEecCCCcchhH
Confidence 9999999998653
No 334
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.37 E-value=0.12 Score=40.27 Aligned_cols=113 Identities=22% Similarity=0.185 Sum_probs=75.0
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhc-------chhhhhhhcCCCeeEEeCCCCCcC
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASS-------RQDLVSKACYKNIEWVEGDALDLP 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~d~~~~~ 101 (222)
.....||+-|+|-=.|||.+....++. ++.|+|.||+-.++...+. ++...+.. ..-+.+..+|....+
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~-~~fldvl~~D~sn~~ 278 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-SQFLDVLTADFSNPP 278 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc-chhhheeeecccCcc
Confidence 345689999999999999999888765 6789999999888774322 22222211 023456677777655
Q ss_pred C-CCCceeEEEEccccc------------------------Cccc---------HHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 F-SDCFFDAITMGYGLR------------------------NVVD---------KRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~-~~~~~D~v~~~~~l~------------------------~~~~---------~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
. .+..||.|+|--... |.|. ....|.-..+.|..||++++.-+.
T Consensus 279 ~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 279 LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 3 356799999844321 1111 134567778889999999886553
No 335
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.37 E-value=1.6 Score=34.24 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=60.3
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC---CCCCc-C-
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DALDL-P- 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~~-~- 101 (222)
.....++.+||=.|+|. |..+..+++.. +.+ +++++.+++..+.+++.-. -.++.. +...+ .
T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~~ga---------~~~i~~~~~~~~~~~~~ 226 (339)
T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKALGA---------DFVINSGQDDVQEIREL 226 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCC---------CEEEcCCcchHHHHHHH
Confidence 34556788999998865 55666777775 456 9999998888777754311 111111 10011 1
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.....+|+|+-... . ...+....+.|+++|++++...
T Consensus 227 ~~~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 227 TSGAGADVAIECSG-----N-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred hCCCCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 12235898885332 1 3345666778999999987654
No 336
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=93.36 E-value=0.45 Score=32.39 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=51.3
Q ss_pred HHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CC
Q 027517 24 RMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PF 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~ 102 (222)
.++.......+ .-|||+|=|+|..-.++.+.+ ++.+++++|-.-... ....+ +.-.++.+|+.+. +.
T Consensus 19 ~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l~~h------p~~~P----~~~~~ilGdi~~tl~~ 86 (160)
T PF12692_consen 19 NWAAAQVAGLP-GPVLELGLGNGRTYDHLREIF-PDRRIYVFDRALACH------PSSTP----PEEDLILGDIRETLPA 86 (160)
T ss_dssp HHHHHHTTT---S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-------GGG-------GGGEEES-HHHHHHH
T ss_pred HHHHHHhcCCC-CceEEeccCCCccHHHHHHhC-CCCeEEEEeeecccC------CCCCC----chHheeeccHHHHhHH
Confidence 33444444444 479999999999999999998 677999999532211 11111 3346778887663 21
Q ss_pred ---CCCceeEEEEcccccCccc----HHHHHHHHhcccCCCcEEEE
Q 027517 103 ---SDCFFDAITMGYGLRNVVD----KRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 103 ---~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~l~~gG~l~i 141 (222)
-..+.-++-+-..-++-.. ...+-.-+..+|.|||.++-
T Consensus 87 ~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 87 LARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 1223333333333332221 11223345668999999864
No 337
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.28 E-value=0.49 Score=35.62 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=61.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..++..-.|+|+-+|+++..+.++ +..|+++|.-+ |.+..-.. ..|+....|-..+.....+.|-.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~-ma~sL~dt---------g~v~h~r~DGfk~~P~r~~idWmV 275 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP-MAQSLMDT---------GQVTHLREDGFKFRPTRSNIDWMV 275 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccch-hhhhhhcc---------cceeeeeccCcccccCCCCCceEE
Confidence 467889999999999999999866 56899999643 22221111 467777778776543345689888
Q ss_pred EcccccCcccHHHHHHHHhcccCCC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPG 136 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~g 136 (222)
|..+ +.+.++-..+..+|..|
T Consensus 276 CDmV----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 276 CDMV----EKPARVAALIAKWLVNG 296 (358)
T ss_pred eehh----cCcHHHHHHHHHHHHcc
Confidence 8543 55666666677777644
No 338
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.14 E-value=1.7 Score=34.07 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=58.0
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC---CCCcCCCCCcee
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD---ALDLPFSDCFFD 108 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~~D 108 (222)
++.+||-.|||. |..+..+++.. +. ++++++.+++..+.+++.-. -.++..+ ........+.+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~g~---------~~vi~~~~~~~~~~~~~~~~vd 233 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAMGA---------DETVNLARDPLAAYAADKGDFD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCC---------CEEEcCCchhhhhhhccCCCcc
Confidence 678898888775 66777778774 44 68999988877775554310 0111111 111111123489
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+++-.... ...++...+.|+++|+++...
T Consensus 234 ~vld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 234 VVFEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 98864431 235677888999999988654
No 339
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.11 E-value=2.5 Score=33.51 Aligned_cols=98 Identities=21% Similarity=0.181 Sum_probs=61.7
Q ss_pred hCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC----CCCC-c-C
Q 027517 30 SGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DALD-L-P 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----d~~~-~-~ 101 (222)
....++.+||=.|+ | -|..+..+++.. +.++++++.+++..+.+++.+. --.++.. +..+ + .
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lG--------a~~vi~~~~~~~~~~~i~~ 223 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLG--------FDEAFNYKEEPDLDAALKR 223 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcC--------CCEEEECCCcccHHHHHHH
Confidence 45678889999987 3 577888888875 5689999988887776653221 1112211 1111 1 0
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+.+|+|+-... ...+....+.++++|++++...
T Consensus 224 ~~~~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 224 YFPEGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred HCCCCcEEEEECCC-------HHHHHHHHHHhccCCEEEEECc
Confidence 11235898885332 2356778889999999987643
No 340
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.97 E-value=1.3 Score=35.99 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
-++++|+=+|+|. |......++.+ +.+|+++|.++.-.+.++.. ..... +..+. . ...|+|+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~----------G~~~~--~~~e~-v--~~aDVVI 262 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME----------GYEVM--TMEEA-V--KEGDIFV 262 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc----------CCEEc--cHHHH-H--cCCCEEE
Confidence 4688999999998 66666666664 56899999998877766543 11111 11111 1 2469988
Q ss_pred EcccccCcccHHHHHH-HHhcccCCCcEEEEEecC
Q 027517 112 MGYGLRNVVDKRKALE-ESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~-~~~~~l~~gG~l~i~~~~ 145 (222)
..-. . ..++. ...+.+|+||+++.....
T Consensus 263 ~atG-----~-~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 263 TTTG-----N-KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ECCC-----C-HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 6432 2 23444 347899999999776543
No 341
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.95 E-value=0.21 Score=40.02 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
++.+|+=+|+|. |..+...++.+ +.+|+.+|.+++..+.+..... ..+.....+..++...-..+|+|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEE
Confidence 345799999985 66666667665 4589999998876655543321 1111111111111101135799997
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.-.....+.+.-+-++..+.++|++.++-.
T Consensus 237 a~~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 237 AVLIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred ccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 543211111221234555667999876654
No 342
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.33 E-value=0.34 Score=38.82 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=49.5
Q ss_pred CCeeEEeCCCCCcC--CCCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 88 KNIEWVEGDALDLP--FSDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 88 ~~i~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+++.+...++.+.. .+++++|.++......++++ ....++.+.+.++|||+++.-....+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 68999999988742 45688999999999998864 57789999999999999988665543
No 343
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.31 E-value=1.1 Score=34.81 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
++.+||=+|||. |.++..+++.. +.+ +.++|.+++.++.+.... ++ |..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~--G~~~v~~~~~~~~rl~~a~~~~------------~i--~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA--GGSPPAVWETNPRRRDGATGYE------------VL--DPEKD--PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHhhhhcc------------cc--Chhhc--cCCCCCEEE
Confidence 466888889875 67777788775 444 777888777665554320 11 11110 123588888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
-+-.- ...+....+.++++|++++.-..
T Consensus 206 d~~G~------~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 206 DASGD------PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred ECCCC------HHHHHHHHHhhhcCcEEEEEeec
Confidence 54321 34567788899999999876543
No 344
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.30 E-value=4.4 Score=31.60 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=61.6
Q ss_pred HhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC----CCC-c
Q 027517 28 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD----ALD-L 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d----~~~-~ 100 (222)
......++.+||=.|+ |-|..+..+++.. +.++++++.+++..+.+++.-. -.++..+ ..+ .
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa---------~~vi~~~~~~~~~~~~ 200 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGF---------DVAFNYKTVKSLEETL 200 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCC---------CEEEeccccccHHHHH
Confidence 3445678889998884 3577888888875 5689999988887777755311 1111111 111 0
Q ss_pred -CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+.+|+|+-... ...+....+.++++|+++...
T Consensus 201 ~~~~~~gvdvv~d~~G-------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 201 KKASPDGYDCYFDNVG-------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred HHhCCCCeEEEEECCC-------HHHHHHHHHHhCcCcEEEEec
Confidence 111245898885332 124577888999999998754
No 345
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=92.18 E-value=1.9 Score=32.48 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=49.8
Q ss_pred hCCCCCCeEEEecCCCCh--h--HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCC
Q 027517 30 SGAKTGDNVLDVCCGSGD--L--SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDC 105 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~--~--~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (222)
+..+-..+||-+|+|+-. . +..+.+.++.++-++-.|+.+-.- +.-..+.+|...+..+ .
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS---------------Da~~~~~~Dc~t~~~~-~ 120 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS---------------DADQSIVGDCRTYMPP-D 120 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------SSSEEEES-GGGEEES-S
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc---------------ccCCceeccccccCCC-C
Confidence 345667899999999732 2 445566665555666777644210 2345677888776544 6
Q ss_pred ceeEEEEccc---ccCc-----c--c-HHHHHHHHhcccCCCcEEEE
Q 027517 106 FFDAITMGYG---LRNV-----V--D-KRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 106 ~~D~v~~~~~---l~~~-----~--~-~~~~l~~~~~~l~~gG~l~i 141 (222)
++|+|++-.- ..+. . . ..-+..-++..|+-||.+.+
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvai 167 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAI 167 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEE
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEE
Confidence 7999998543 0111 0 1 23445667778999999877
No 346
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.15 E-value=2.8 Score=33.06 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=58.9
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC---CCc--CC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA---LDL--PF 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~--~~ 102 (222)
....++.+||=.|+|+ |..+..+++.. +.+ +++++.+++..+.+++.-. -.++..+- ..+ ..
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~Ga---------~~~i~~~~~~~~~~~~~~ 224 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSLGA---------MQTFNSREMSAPQIQSVL 224 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcCC---------ceEecCcccCHHHHHHHh
Confidence 3456788999999875 66667777775 455 7899988888777654311 11111110 011 01
Q ss_pred CCCcee-EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 103 SDCFFD-AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D-~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
....+| +|+-+-. . ...+....+.+++||.+++....
T Consensus 225 ~~~~~d~~v~d~~G-----~-~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 225 RELRFDQLILETAG-----V-PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred cCCCCCeEEEECCC-----C-HHHHHHHHHHhhcCCEEEEEccC
Confidence 223466 5543221 1 34677788899999999887543
No 347
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.96 E-value=0.64 Score=35.18 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=30.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC----CCCcEEEEeCCh
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVG----SQGKVIGLDFSK 69 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~~~~~D~~~ 69 (222)
.+...++|+|||.|.++..++..+. +...++.||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 5677999999999999999998863 235789999644
No 348
>PLN02740 Alcohol dehydrogenase-like
Probab=91.87 E-value=3 Score=33.47 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=61.1
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC-----CCC-c-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-----ALD-L- 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-----~~~-~- 100 (222)
....++.+||=+|+|. |..+..+++.. +. +|+++|.+++.++.+++.-. -.++... ..+ +
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~~Ga---------~~~i~~~~~~~~~~~~v~ 262 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKEMGI---------TDFINPKDSDKPVHERIR 262 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHHcCC---------cEEEecccccchHHHHHH
Confidence 4567788999999875 66667777774 45 69999999988888865411 1122111 111 0
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-...- ...+......+++| |++++....
T Consensus 263 ~~~~~g~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 263 EMTGGGVDYSFECAGN------VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred HHhCCCCCEEEECCCC------hHHHHHHHHhhhcCCCEEEEEccC
Confidence 0111258888753321 24566666778886 988776543
No 349
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=91.71 E-value=0.41 Score=31.95 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=29.9
Q ss_pred hcCCHHHHHHHHHHcCCeEEEEeeecCCeeeeEe
Q 027517 186 EFLTGKDLEKLALEIGFSRAKHYELSGGLMGNLV 219 (222)
Q Consensus 186 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 219 (222)
.-+++++++.+++++||+++..+..+.+.+.+++
T Consensus 94 ~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l~L 127 (127)
T PF10017_consen 94 YKYSPEEFEALAEQAGLEVEKRWTDPKGDFSLYL 127 (127)
T ss_pred eCcCHHHHHHHHHHCCCeeEEEEECCCCCeEEEC
Confidence 4679999999999999999999999988877653
No 350
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=91.66 E-value=4.1 Score=31.68 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=61.5
Q ss_pred HhhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 28 SWSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
......++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++.- --.++...-.++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~G---------a~~vi~~~~~~~~~~v~ 205 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKELG---------FDAVFNYKTVSLEEALK 205 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcC---------CCEEEeCCCccHHHHHH
Confidence 3445677889988884 3467778888875 568999998888777776531 111221111111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+.+|+|+-... ...+....+.++++|+++...
T Consensus 206 ~~~~~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 206 EAAPDGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HHCCCCcEEEEECCC-------HHHHHHHHHhhccCCEEEEEc
Confidence 111245898885332 245677888999999987653
No 351
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.46 E-value=3.5 Score=31.19 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=60.0
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++.-.. ..+. .. .........
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~g~~------~~~~--~~--~~~~~~~~~ 159 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEALGPA------DPVA--AD--TADEIGGRG 159 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHcCCC------cccc--cc--chhhhcCCC
Confidence 34556788899888875 66677777775 446 99999888887766654200 1111 00 000112345
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+|+++-+..- ...+....+.++++|.++....
T Consensus 160 ~d~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 160 ADVVIEASGS------PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred CCEEEEccCC------hHHHHHHHHHhcCCcEEEEEec
Confidence 8888853221 2356777888999999876543
No 352
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.32 E-value=0.34 Score=37.86 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=50.0
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCCceeEEEEc
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDCFFDAITMG 113 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~v~~~ 113 (222)
+++|+-||-|.++.-+.+. + -..+.++|+++.+.+.-+.+. + .....|+.++. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEec
Confidence 6999999999999988866 2 225889999999888877775 3 77888888764 333 59999976
Q ss_pred ccccCc
Q 027517 114 YGLRNV 119 (222)
Q Consensus 114 ~~l~~~ 119 (222)
.....+
T Consensus 69 pPCQ~f 74 (335)
T PF00145_consen 69 PPCQGF 74 (335)
T ss_dssp ---TTT
T ss_pred cCCceE
Confidence 665544
No 353
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=91.21 E-value=0.57 Score=35.94 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=24.1
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+.||+|+..+...|+-.+. +..+++|+|.|++-
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvE 253 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVE 253 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEE
Confidence 4699999877765554333 67788999999764
No 354
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.21 E-value=2.9 Score=27.26 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=58.2
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEEc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMG 113 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 113 (222)
..+|+|+|-|.=......++. .+..++++|+.+. .+. ..+.+...|+++.... -+..|+|++
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e--~g~dv~atDI~~~---~a~-----------~g~~~v~DDitnP~~~iY~~A~lIYS- 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAE--RGFDVLATDINEK---TAP-----------EGLRFVVDDITNPNISIYEGADLIYS- 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHH--cCCcEEEEecccc---cCc-----------ccceEEEccCCCccHHHhhCccceee-
Confidence 449999999875554433333 2579999999876 111 3678889998885422 134677777
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+...++....+-++.+.+ |..+++..+...
T Consensus 77 --iRpppEl~~~ildva~aV--ga~l~I~pL~Ge 106 (129)
T COG1255 77 --IRPPPELQSAILDVAKAV--GAPLYIKPLTGE 106 (129)
T ss_pred --cCCCHHHHHHHHHHHHhh--CCCEEEEecCCC
Confidence 444556666666666543 456777665543
No 355
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.17 E-value=5.9 Score=30.78 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=29.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHH
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMA 75 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~ 75 (222)
.....|+.+|||.-.+...+..... ....++-+|+++-.....
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 5567899999999888888776631 334677777765443333
No 356
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.93 E-value=4.6 Score=31.47 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=59.4
Q ss_pred hCCCCCCeEEEecCC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CCCCce
Q 027517 30 SGAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FSDCFF 107 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~ 107 (222)
....++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++.-. . .++...-.... ...+.+
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~--------~-~~~~~~~~~~~~~~~~~~ 226 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGA--------D-EVVDSGAELDEQAAAGGA 226 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCC--------c-EEeccCCcchHHhccCCC
Confidence 455677889999887 466677777764 5689999988887777643210 0 11111100100 012358
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
|+++....- ...+....+.|+++|.++...
T Consensus 227 d~vi~~~~~------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 227 DVILVTVVS------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CEEEECCCc------HHHHHHHHHhcccCCEEEEEC
Confidence 888764221 235677788999999987764
No 357
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.91 E-value=2.5 Score=33.73 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeE
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~ 109 (222)
..++.+||-.|+|. |..+..+++.. +.++++++.+++....+.+.+ + --.++. .+...+....+.+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~---G-----a~~vi~~~~~~~~~~~~~~~D~ 250 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRL---G-----ADSFLVSTDPEKMKAAIGTMDY 250 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhC---C-----CcEEEcCCCHHHHHhhcCCCCE
Confidence 35678888899875 66777778775 557888887765433222111 1 001111 111111100124788
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|+-... . ...+....+.++++|+++....
T Consensus 251 vid~~g-----~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 251 IIDTVS-----A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred EEECCC-----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 875332 1 3356778889999999887653
No 358
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.81 E-value=1 Score=36.13 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=40.0
Q ss_pred HHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh
Q 027517 26 AVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
-.+.+.+.|+++||-|.+|.......+.+. | .+|++||++|..+...+-+.+.
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~--P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAG--P-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcC--C-ceEEEEeCCHHHHHHHHHHHHH
Confidence 345667889999999997766666655532 3 4999999999998887766654
No 359
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.81 E-value=1.5 Score=33.73 Aligned_cols=106 Identities=21% Similarity=0.176 Sum_probs=60.7
Q ss_pred CeEEEecCCC-Chh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeEEEE
Q 027517 36 DNVLDVCCGS-GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAITM 112 (222)
Q Consensus 36 ~~vLdiG~G~-G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~~ 112 (222)
.+|+-+|.|. |.. +..+.+. +....+++.|.+...++.+... .+.... .+... ......|+|+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~--~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLA--EAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhh--hhcccCCEEEE
Confidence 4788888885 444 4444443 4555688999888887777654 222211 11111 11244799998
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHH
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWM 159 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~ 159 (222)
.-.+. ....+++++...|++|..+. +...........+....
T Consensus 71 avPi~---~~~~~l~~l~~~l~~g~iv~--Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 71 AVPIE---ATEEVLKELAPHLKKGAIVT--DVGSVKSSVVEAMEKYL 112 (279)
T ss_pred eccHH---HHHHHHHHhcccCCCCCEEE--ecccccHHHHHHHHHhc
Confidence 66544 34677888888888876553 33333333334444333
No 360
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.76 E-value=5.1 Score=31.51 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=60.9
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC------
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD------ 99 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~------ 99 (222)
......++.+||-.|+|. |..+..+++.. +.+ ++.++.+++..+.+++.- .-.++..+-.+
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~~g---------~~~vi~~~~~~~~~~~~ 224 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKELG---------ATHTVNVRTEDTPESAE 224 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcC---------CcEEeccccccchhHHH
Confidence 344567788888888765 66777778775 456 888888777766664431 11111111111
Q ss_pred -c--CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 100 -L--PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 100 -~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+ ....+.+|+|+-+..- ...+....+.++++|+++....
T Consensus 225 ~~~~~~~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 225 KIAELLGGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred HHHHHhCCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 1223458999864331 2256778889999999876543
No 361
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.69 E-value=1.9 Score=33.58 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=59.5
Q ss_pred CCCCCCeEEEecCC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC--CCCCcC----CC
Q 027517 31 GAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG--DALDLP----FS 103 (222)
Q Consensus 31 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--d~~~~~----~~ 103 (222)
...|+.+|--.|.| -|..+..+++++ +.+|+++|-+..--+.+-+++.+ . .|+.. |-.... .-
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~~~LGA-------d-~fv~~~~d~d~~~~~~~~~ 247 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAIKSLGA-------D-VFVDSTEDPDIMKAIMKTT 247 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHHHhcCc-------c-eeEEecCCHHHHHHHHHhh
Confidence 44688887777754 699999999997 67999999987555555554421 1 12211 111111 11
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
+.-.|-|... ....+..+.+.||++|.++++.....
T Consensus 248 dg~~~~v~~~--------a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 248 DGGIDTVSNL--------AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred cCcceeeeec--------cccchHHHHHHhhcCCEEEEEeCcCC
Confidence 1223333322 13446668889999999998766543
No 362
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.51 E-value=1.8 Score=30.89 Aligned_cols=100 Identities=16% Similarity=0.055 Sum_probs=57.5
Q ss_pred eEEEecCCCCh-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--------------hhcCCCeeEEeCCCCCcC
Q 027517 37 NVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--------------KACYKNIEWVEGDALDLP 101 (222)
Q Consensus 37 ~vLdiG~G~G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~d~~~~~ 101 (222)
+|.=+|+|+-+ -...++.. .+.+|..+|.+++.++.++++....- .....++. ...|+.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh
Confidence 46668988733 33333333 36799999999999988887654310 00012333 334444432
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..|+|+=.- .+.++-...+++++.+.++|+-.+.-...
T Consensus 78 ----~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 78 ----DADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp ----TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred ----hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 468777433 34445567899999999999888765443
No 363
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=90.43 E-value=5.2 Score=31.34 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=61.5
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCe-eEEeCCCCC-c--CC
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGDALD-L--PF 102 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~-~--~~ 102 (222)
......++.+||-.|+|. |..+..+++.. +.+++++..+++..+..++.-. ..+ .....+..+ + ..
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~~g~-------~~v~~~~~~~~~~~l~~~~ 223 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARELGA-------DDTINVGDEDVAARLRELT 223 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHHhCC-------CEEecCcccCHHHHHHHHh
Confidence 344567788999998764 67777888875 5688888877777766644310 011 111111111 1 01
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+...+|+++.+..- ...+..+.+.|+++|.++....
T Consensus 224 ~~~~vd~vld~~g~------~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 224 DGEGADVVIDATGN------PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred CCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEcC
Confidence 23458999875321 3456778889999999876543
No 364
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=90.42 E-value=0.75 Score=35.30 Aligned_cols=126 Identities=14% Similarity=0.191 Sum_probs=71.4
Q ss_pred HHhhhhcCcchhhHHHHHHHHhhCCCCCCeEEEecCCCChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc
Q 027517 8 LQLNDLLSFGQHRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC 86 (222)
Q Consensus 8 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (222)
|-...+++++.-.... .+..+. ..+..|+|+=+|-|+++. .+... ....|.++|.+|..++..++.+......
T Consensus 171 d~t~~MFS~GN~~EK~-Rv~~~s--c~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~- 244 (351)
T KOG1227|consen 171 DPTKTMFSRGNIKEKK-RVLNTS--CDGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVM- 244 (351)
T ss_pred chhhhhhhcCcHHHHH-Hhhhcc--cccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchH-
Confidence 4444455555543322 222222 224689999999999998 44443 2237999999999999999887654322
Q ss_pred CCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-c-EEEEEecC
Q 027517 87 YKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-S-RISVLDFN 145 (222)
Q Consensus 87 ~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G-~l~i~~~~ 145 (222)
.+.....+|-... -+....|-|.....-. -++-.--..++|||. | ++=|.+-.
T Consensus 245 -~r~~i~~gd~R~~-~~~~~AdrVnLGLlPS----se~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 245 -DRCRITEGDNRNP-KPRLRADRVNLGLLPS----SEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred -HHHHhhhcccccc-Cccccchheeeccccc----cccchHHHHHHhhhcCCcEEEEeccc
Confidence 2333344444333 3345678887755433 233333344556664 4 44444433
No 365
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.12 E-value=5.4 Score=31.12 Aligned_cols=100 Identities=24% Similarity=0.248 Sum_probs=60.8
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc----C
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----P 101 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~ 101 (222)
......++.+||-.|+|. |..+..+++.. +.+ ++.++.+++..+.+++... . .++..+-.+. .
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~--------~-~~~~~~~~~~~~~~~ 221 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKLGA--------T-ETVDPSREDPEAQKE 221 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCC--------e-EEecCCCCCHHHHHH
Confidence 344556788999998653 56667777764 445 8888888887776644310 1 1222111111 1
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
...+.+|+++.+.. ....+....+.|+++|+++....
T Consensus 222 ~~~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 222 DNPYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred hcCCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 12346899986432 13467777888999999877644
No 366
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=90.07 E-value=8.2 Score=31.27 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=62.3
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC---CCCC-cC--
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DALD-LP-- 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~-~~-- 101 (222)
....++.+||=.|+|. |..+..+++.. +.+ ++..|.+++-++.+++.-. . .+... +..+ +.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~--Ga~~vi~~d~~~~r~~~a~~~Ga--------~-~v~~~~~~~~~~~v~~~ 249 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLL--GAAVVIVGDLNPARLAQARSFGC--------E-TVDLSKDATLPEQIEQI 249 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHcCC--------e-EEecCCcccHHHHHHHH
Confidence 4456778888788875 66667777775 344 6667888878877776421 1 11111 1111 10
Q ss_pred CCCCceeEEEEcccccC-------c-ccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRN-------V-VDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~-------~-~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+++-.-.-.. . .+....++...+.+++||++++.-..
T Consensus 250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 12235898885333210 0 12235788888999999999886654
No 367
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.88 E-value=0.61 Score=35.91 Aligned_cols=97 Identities=16% Similarity=0.025 Sum_probs=53.4
Q ss_pred CeEEEecCCCChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh---------------cCCCeeEEeCCCCC
Q 027517 36 DNVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA---------------CYKNIEWVEGDALD 99 (222)
Q Consensus 36 ~~vLdiG~G~G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~---------------~~~~i~~~~~d~~~ 99 (222)
.+|.=||+|.-... ...+.. .+.+|+.+|.+++.++.++++....... ...++.+ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 46888899863332 222222 3568999999999888877653211000 0012222 223222
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
. -...|+|+..-. ....-...+++++...++++-.+
T Consensus 81 a---~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 81 A---VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred H---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEE
Confidence 1 134688886432 22223466778888888776654
No 368
>PRK06940 short chain dehydrogenase; Provisional
Probab=89.77 E-value=5.7 Score=30.23 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=58.6
Q ss_pred eEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C----CCCce
Q 027517 37 NVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----SDCFF 107 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~~ 107 (222)
.+|=-|+ |.....+++.+..+.+|+.+|.+++.++...+.+...+ .++.++..|+.+.. + ..+..
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG----FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4555554 46778888777666789999988766555443332211 35777888887631 0 11458
Q ss_pred eEEEEcccccCcc-cH-----------HHHHHHHhcccCCCcEEEE
Q 027517 108 DAITMGYGLRNVV-DK-----------RKALEESFRVLKPGSRISV 141 (222)
Q Consensus 108 D~v~~~~~l~~~~-~~-----------~~~l~~~~~~l~~gG~l~i 141 (222)
|+++.+....... +. ..+++.+.+.++++|..++
T Consensus 78 d~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 78 TGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred CEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 9999877654221 11 2335556666666665444
No 369
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.66 E-value=0.68 Score=36.74 Aligned_cols=69 Identities=22% Similarity=0.373 Sum_probs=54.7
Q ss_pred hhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc
Q 027517 29 WSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL 100 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (222)
.+...++..|+|..|-.|--+.+++..+.+.+++.++|.+.+-.+.-++.+...+. ..++...+|+..+
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~---~~~~~~~~df~~t 276 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV---SIVESVEGDFLNT 276 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC---CccccccccccCC
Confidence 44556778999999999999999999887788999999999888777776654442 4566667777764
No 370
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.64 E-value=0.86 Score=35.67 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=48.3
Q ss_pred EEEecCCCChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC-CCceeEEEEccc
Q 027517 38 VLDVCCGSGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS-DCFFDAITMGYG 115 (222)
Q Consensus 38 vLdiG~G~G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 115 (222)
|+|+-||.|.++.-+.+. +.+ +.++|+++.+.+.-+.+. +. .+...|+.++... -..+|+++....
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~--------~~-~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANF--------GN-KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhC--------CC-CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999888754 455 568999999888877664 22 4455677665421 235799987655
Q ss_pred ccCc
Q 027517 116 LRNV 119 (222)
Q Consensus 116 l~~~ 119 (222)
...+
T Consensus 69 Cq~f 72 (315)
T TIGR00675 69 CQPF 72 (315)
T ss_pred Cccc
Confidence 4443
No 371
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=89.63 E-value=0.74 Score=31.85 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=25.1
Q ss_pred EecCCCC--hhHHHHH-HHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 40 DVCCGSG--DLSFLLS-EQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 40 diG~G~G--~~~~~l~-~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
|+|++.| ..+..+. +...+..+++++|.++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 2345677899999999988888777
No 372
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.62 E-value=7 Score=30.71 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCCCC--CeEEEecC--CCChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----
Q 027517 31 GAKTG--DNVLDVCC--GSGDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL----- 100 (222)
Q Consensus 31 ~~~~~--~~vLdiG~--G~G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----- 100 (222)
...++ .+||=.|+ |.|..+..+++.. +. ++++++.+++..+.+++.+.. -.++...-.++
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~lGa--------~~vi~~~~~~~~~~i~ 218 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSELGF--------DAAINYKTDNVAERLR 218 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhcCC--------cEEEECCCCCHHHHHH
Confidence 34444 78988886 3577778888875 55 799999888777766553211 11221111111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
....+.+|+|+-... . ..+....+.|+++|+++...
T Consensus 219 ~~~~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 219 ELCPEGVDVYFDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHCCCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 011245898885332 1 12467788899999988653
No 373
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=89.49 E-value=7.7 Score=31.00 Aligned_cols=99 Identities=14% Similarity=0.227 Sum_probs=60.5
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CC----CCC-c-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GD----ALD-L- 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d----~~~-~- 100 (222)
....++.+||=.|+|. |..+..+++.. +. +++++|.+++.++.+++.-. -.++. .+ ..+ +
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~~Ga---------~~~i~~~~~~~~~~~~v~ 249 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMA--KASRIIAIDINPAKFELAKKLGA---------TDCVNPNDYDKPIQEVIV 249 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhCC---------CeEEcccccchhHHHHHH
Confidence 4557788999999875 66677777775 45 69999999988888765421 01111 11 000 0
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-.-. . ...+....+.++++ |++++....
T Consensus 250 ~~~~~g~d~vid~~G-----~-~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 250 EITDGGVDYSFECIG-----N-VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred HHhCCCCCEEEECCC-----C-HHHHHHHHHHhhcCCCeEEEEecc
Confidence 011125788875322 1 34566677788886 988776543
No 374
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.37 E-value=3.8 Score=35.42 Aligned_cols=92 Identities=16% Similarity=0.089 Sum_probs=56.4
Q ss_pred CCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
..+|+=+|||. |.......+. .+.+++.+|.+++.++.+++. ...++.+|..+.. ..-++.|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRKF----------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhc----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 35788899886 5555444443 356899999999998888653 4678889988743 12245787
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+++... -++....+-...+.+.|+-.++.
T Consensus 468 vvv~~~---d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 468 LINAID---DPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred EEEEeC---CHHHHHHHHHHHHHhCCCCeEEE
Confidence 776431 11222223333444456655554
No 375
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.27 E-value=7.5 Score=30.75 Aligned_cols=47 Identities=23% Similarity=0.414 Sum_probs=36.7
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
....++.+||-.|+|. |..+..+++.. +.+++++|.+++.++.+++.
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh
Confidence 4556788999999976 77777788775 45899999999888877653
No 376
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=88.97 E-value=1.6 Score=32.06 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=42.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
+.-...-|++||.|.|+.+..+... .-.+...++.+...+.-.+-..++.+ .+..+..+|+..
T Consensus 47 ~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~----~~~~IHh~D~LR 109 (326)
T KOG0821|consen 47 GNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP----GKLRIHHGDVLR 109 (326)
T ss_pred cccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC----cceEEeccccce
Confidence 3334568999999999999999865 23478888888876665554433222 355566666654
No 377
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=88.86 E-value=6.1 Score=31.02 Aligned_cols=97 Identities=20% Similarity=0.389 Sum_probs=56.8
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC---CCCC-c--CCC
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG---DALD-L--PFS 103 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---d~~~-~--~~~ 103 (222)
...++.+||..|+|. |..+..+++..+. ..+++++.++...+.+++.- ...++.. +..+ + ..+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~g---------~~~vi~~~~~~~~~~i~~~~~ 233 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEAG---------ATDIINPKNGDIVEQILELTG 233 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHhC---------CcEEEcCCcchHHHHHHHHcC
Confidence 445678888877653 6677777777521 36888887776666555331 1111111 1111 1 012
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+.+|+++-...- ...+....+.|+++|+++...
T Consensus 234 ~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 234 GRGVDCVIEAVGF------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCCCcEEEEccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 3468988854221 246777888999999987654
No 378
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.72 E-value=7.7 Score=28.45 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=59.3
Q ss_pred CCCCCCeEEEecCCCCh--hHH--HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCCCCC
Q 027517 31 GAKTGDNVLDVCCGSGD--LSF--LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPFSDC 105 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~--~~~--~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~ 105 (222)
.-.+...+++..|+.|. .+. ..+.+ +.+++++.|-.++..+...++.+...+.. +-++++.++..+ +-..-.
T Consensus 38 AG~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~--~~vEfvvg~~~e~~~~~~~ 114 (218)
T PF07279_consen 38 AGWNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLS--DVVEFVVGEAPEEVMPGLK 114 (218)
T ss_pred ccccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhcccc--ccceEEecCCHHHHHhhcc
Confidence 33455688999766542 233 33334 45778999988877766666665433221 346888887543 221123
Q ss_pred ceeEEEEcccccCcccHH-HHHHHHhcccCCCcEEEEE
Q 027517 106 FFDAITMGYGLRNVVDKR-KALEESFRVLKPGSRISVL 142 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~-~~l~~~~~~l~~gG~l~i~ 142 (222)
..|.++.-.- ..+.. ++|+.+. +.|.|.+++.
T Consensus 115 ~iDF~vVDc~---~~d~~~~vl~~~~--~~~~GaVVV~ 147 (218)
T PF07279_consen 115 GIDFVVVDCK---REDFAARVLRAAK--LSPRGAVVVC 147 (218)
T ss_pred CCCEEEEeCC---chhHHHHHHHHhc--cCCCceEEEE
Confidence 4788776543 33444 5555433 4456666554
No 379
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.54 E-value=2.8 Score=36.02 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=55.4
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEE
Q 027517 36 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 110 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v 110 (222)
.+|+=+|+|. |......... .+.+++.+|.+++.++.+++. ...++.+|..+.. ..-++.|.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRKY----------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhC----------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 4677777665 4433333332 356899999999998887653 4678889988742 122457877
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
++... + ++....+-...+.+.|...++...
T Consensus 469 v~~~~--d-~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 469 VITCN--E-PEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred EEEeC--C-HHHHHHHHHHHHHHCCCCeEEEEe
Confidence 76432 1 122222333344566777776543
No 380
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.52 E-value=11 Score=29.83 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=60.4
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P- 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~- 101 (222)
....++.+||-.|+|. |..+..+++.. +. .++++|.+++..+.+++.- --.++...-.++ .
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~g---------~~~~v~~~~~~~~~~i~~~ 230 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKEYG---------ATDIVDYKNGDVVEQILKL 230 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcC---------CceEecCCCCCHHHHHHHH
Confidence 4556788899888764 66667777775 44 5899999887777766531 111111111110 1
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.....+|+++-+..- ...+....+.|+++|+++.....
T Consensus 231 ~~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 231 TGGKGVDAVIIAGGG------QDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred hCCCCCcEEEECCCC------HHHHHHHHHHhhcCCEEEEeccc
Confidence 122458988853321 24577888889999998865443
No 381
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.47 E-value=2.2 Score=34.39 Aligned_cols=74 Identities=20% Similarity=0.112 Sum_probs=49.9
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC---CCCceeEEE
Q 027517 36 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF---SDCFFDAIT 111 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~ 111 (222)
.+||=||||. |....+.+.+ ....+|+..|-+.+..+.+..... .+++..+.|+.+.+- --..+|+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~-~~d~~V~iAdRs~~~~~~i~~~~~-------~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ-NGDGEVTIADRSKEKCARIAELIG-------GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHhhcc-------ccceeEEecccChHHHHHHHhcCCEEE
Confidence 4799999976 5555555444 223699999999888777765531 378889999888531 113459988
Q ss_pred Eccccc
Q 027517 112 MGYGLR 117 (222)
Q Consensus 112 ~~~~l~ 117 (222)
.....+
T Consensus 74 n~~p~~ 79 (389)
T COG1748 74 NAAPPF 79 (389)
T ss_pred EeCCch
Confidence 755433
No 382
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=88.42 E-value=11 Score=31.78 Aligned_cols=110 Identities=18% Similarity=0.274 Sum_probs=64.4
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC---CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-cCC-CCCcee
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG---SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-LPF-SDCFFD 108 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~D 108 (222)
|+..|.|..||+|.+.....+..+ ....++|.+..+.+...++.+........ .......+|... +.. ...+||
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~-~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY-ANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc-cccCcccCCcCCCccccccccCC
Confidence 557899999999999876554332 12368999999999888887642211100 122222333222 111 124577
Q ss_pred EEEEcccccC---------------------cc----cHHHHHHHHhcccCCCcEEEEEec
Q 027517 109 AITMGYGLRN---------------------VV----DKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 109 ~v~~~~~l~~---------------------~~----~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.|+++..+.. ++ .-..++..+...|++||+..++-.
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 7776543221 11 123567788889999998666543
No 383
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=88.36 E-value=10 Score=29.40 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=58.1
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCce
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFF 107 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 107 (222)
.....++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++. + +.... +.... ...+.+
T Consensus 150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~~----g------~~~~~-~~~~~-~~~~~~ 215 (319)
T cd08242 150 QVPITPGDKVAVLGDGKLGLLIAQVLALT--GPDVVLVGRHSEKLALARRL----G------VETVL-PDEAE-SEGGGF 215 (319)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHc----C------CcEEe-Ccccc-ccCCCC
Confidence 34556788898888653 55556666664 55799999888888777652 1 11110 11111 223458
Q ss_pred eEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 108 DAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
|+++-... . ...+....+.|+++|.++..
T Consensus 216 d~vid~~g-----~-~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 216 DVVVEATG-----S-PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CEEEECCC-----C-hHHHHHHHHHhhcCCEEEEE
Confidence 98886431 1 33566777889999998863
No 384
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.06 E-value=1.3 Score=33.55 Aligned_cols=91 Identities=22% Similarity=0.274 Sum_probs=50.9
Q ss_pred HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCcccHHHHHHHH
Q 027517 50 FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNVVDKRKALEES 129 (222)
Q Consensus 50 ~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~ 129 (222)
..+.+. ++..+|+++|.++..++.+++.- -+.-...+...+ ..+|+|+.+-.+. ....+++++
T Consensus 3 ~aL~~~-g~~~~v~g~d~~~~~~~~a~~~g---------~~~~~~~~~~~~----~~~DlvvlavP~~---~~~~~l~~~ 65 (258)
T PF02153_consen 3 LALRKA-GPDVEVYGYDRDPETLEAALELG---------IIDEASTDIEAV----EDADLVVLAVPVS---AIEDVLEEI 65 (258)
T ss_dssp HHHHHT-TTTSEEEEE-SSHHHHHHHHHTT---------SSSEEESHHHHG----GCCSEEEE-S-HH---HHHHHHHHH
T ss_pred HHHHhC-CCCeEEEEEeCCHHHHHHHHHCC---------CeeeccCCHhHh----cCCCEEEEcCCHH---HHHHHHHHh
Confidence 444444 55679999999999998886552 222222221111 2369999866544 457788999
Q ss_pred hcccCCCcEEEEEecCCCCCchhhHHHHHH
Q 027517 130 FRVLKPGSRISVLDFNKSTQPFTTAIQEWM 159 (222)
Q Consensus 130 ~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~ 159 (222)
...+++|..+. |......+....+....
T Consensus 66 ~~~~~~~~iv~--Dv~SvK~~~~~~~~~~~ 93 (258)
T PF02153_consen 66 APYLKPGAIVT--DVGSVKAPIVEAMERLL 93 (258)
T ss_dssp HCGS-TTSEEE--E--S-CHHHHHHHHHHH
T ss_pred hhhcCCCcEEE--EeCCCCHHHHHHHHHhc
Confidence 99898886654 33333334444444433
No 385
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.00 E-value=4 Score=31.77 Aligned_cols=90 Identities=20% Similarity=0.135 Sum_probs=50.3
Q ss_pred CCeEEEecCCC-ChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 35 GDNVLDVCCGS-GDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
..+|.=||+|. |... ..+.+. +...+++++|.+++..+.+++.- -......+..+. -...|+|+.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~~g---------~~~~~~~~~~~~---~~~aDvVii 72 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARELG---------LGDRVTTSAAEA---VKGADLVIL 72 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhCC---------CCceecCCHHHH---hcCCCEEEE
Confidence 35788999886 3333 333322 22237999999988776665421 111111121111 134798887
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
.-.... ...+++.+...++++..++
T Consensus 73 avp~~~---~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 73 CVPVGA---SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CCCHHH---HHHHHHHHHhhCCCCCEEE
Confidence 654432 3456677777788887553
No 386
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=87.96 E-value=11 Score=29.99 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=60.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-C----CCC-c-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-D----ALD-L- 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d----~~~-~- 100 (222)
....++.+||=.|+|. |..+..+++.. +. +++++|.+++.++.+++.-. -.++.. + ..+ +
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~lGa---------~~~i~~~~~~~~~~~~v~ 250 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELAKKFGA---------TDCVNPKDHDKPIQQVLV 250 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcCC---------CEEEcccccchHHHHHHH
Confidence 4557788999888764 56667777774 45 69999999988887765311 111111 1 101 0
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+|+-... . ...+....+.++++ |+++.....
T Consensus 251 ~~~~~g~d~vid~~g-----~-~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 251 EMTDGGVDYTFECIG-----N-VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred HHhCCCCcEEEECCC-----C-hHHHHHHHHhhccCCCeEEEEccC
Confidence 011235888875322 1 34566677788887 988876543
No 387
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=87.89 E-value=12 Score=29.68 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=56.0
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-------c-C-
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-------L-P- 101 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-------~-~- 101 (222)
.++.+||=.|+|. |..+..+++.. +. ++++++.+++..+.+++.- --.++..+-.. + .
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~g---------~~~vi~~~~~~~~~~~~~i~~~ 244 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAREFG---------ADATIDIDELPDPQRRAIVRDI 244 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcC---------CCeEEcCcccccHHHHHHHHHH
Confidence 3677888888764 55666777775 45 7899988887666654321 00111111000 0 0
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+.+.+|+|+-...- ...+....+.++++|+++....
T Consensus 245 ~~~~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 245 TGGRGADVVIEASGH------PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred hCCCCCcEEEECCCC------hHHHHHHHHHhccCCEEEEEcC
Confidence 122458988854321 2356677889999999986543
No 388
>PLN02827 Alcohol dehydrogenase-like
Probab=87.62 E-value=10 Score=30.43 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=58.8
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-----CCCC-cC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-----DALD-LP 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----d~~~-~~ 101 (222)
....++.+||-.|+|. |..+..+++.. +. .++++|.+++..+.+++.-. -.++.. +... +.
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~lGa---------~~~i~~~~~~~~~~~~v~ 257 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKTFGV---------TDFINPNDLSEPIQQVIK 257 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcCC---------cEEEcccccchHHHHHHH
Confidence 3456788999999875 66667777775 44 58899988888777755411 111111 1101 00
Q ss_pred -CCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEec
Q 027517 102 -FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDF 144 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~ 144 (222)
...+.+|+|+-.-. . ...+....+.+++| |++++...
T Consensus 258 ~~~~~g~d~vid~~G-----~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 258 RMTGGGADYSFECVG-----D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred HHhCCCCCEEEECCC-----C-hHHHHHHHHhhccCCCEEEEECC
Confidence 11125788875332 1 23466677788998 99977543
No 389
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=87.61 E-value=12 Score=29.41 Aligned_cols=98 Identities=18% Similarity=0.316 Sum_probs=59.0
Q ss_pred hhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC---CCCc-C-
Q 027517 29 WSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD---ALDL-P- 101 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d---~~~~-~- 101 (222)
.....++.+||-.|+|. |..+..+++.. +.+ +++++-+++..+..++.- ...++... ..++ .
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~~~g---------~~~~~~~~~~~~~~~~~~ 222 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVARELG---------ADDTINPKEEDVEKVREL 222 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcC---------CCEEecCccccHHHHHHH
Confidence 34556788899888765 66677777774 455 889988877666654321 11111111 0111 1
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+...+|+++.+.. ....+..+.+.|+++|+++...
T Consensus 223 ~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 223 TEGRGADLVIEAAG------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred hCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 12234899886421 1345677888999999987654
No 390
>PRK10458 DNA cytosine methylase; Provisional
Probab=87.55 E-value=4.7 Score=33.48 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=33.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcch
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQ 79 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (222)
..+++|+-||.|.+..-+... + ...+.++|+++.+.+.-+.+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHc
Confidence 459999999999999988654 2 225788999998877766553
No 391
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.35 E-value=9.6 Score=28.00 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=58.3
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C-----C
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 103 (222)
+++||-.|++ |.....+++.+ ..+.+|++++-+++..+......... .++.++..|+.+.. . .
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 5688888875 44444444333 24668999998876655443322111 36788888887632 0 0
Q ss_pred CCceeEEEEcccccCcc---c--------------HHHHHHHHhcccCCCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVV---D--------------KRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~---~--------------~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
-+..|.++.+....... + ...+++.+.+.++++|.+++...
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 12468777655432110 1 12335556666777887766543
No 392
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.35 E-value=1.4 Score=30.14 Aligned_cols=98 Identities=15% Similarity=0.076 Sum_probs=50.4
Q ss_pred EEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC-CCCCcCCCCCceeEEEEccc
Q 027517 38 VLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG-DALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 38 vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~v~~~~~ 115 (222)
|+=+|+|. |.+....+.. .+.+|..+.-++ .++..++.--...... .+..+... .........+++|+|+..--
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcchhccCCCcEEEEEec
Confidence 45567775 4444444433 356899999877 5554333211000000 00001000 01111112467999998542
Q ss_pred ccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 116 LRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 116 l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
- .+...+++.++..+.++..+++.
T Consensus 77 a---~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 77 A---YQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp G---GGHHHHHHHHCTGEETTEEEEEE
T ss_pred c---cchHHHHHHHhhccCCCcEEEEE
Confidence 2 24577889999999999776654
No 393
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.03 E-value=4.4 Score=32.94 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=55.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
..+++|+=+|+|. |......++.+ +.+|+++|.++.....+... ...+ .+..+. . ...|+|+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~----------G~~v--~~leea-l--~~aDVVI 255 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD----------GFRV--MTMEEA-A--KIGDIFI 255 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc----------CCEe--CCHHHH-H--hcCCEEE
Confidence 4688999999998 66666666664 56899999888543333221 1111 122221 1 2468887
Q ss_pred EcccccCcccHHHHHH-HHhcccCCCcEEEEEecC
Q 027517 112 MGYGLRNVVDKRKALE-ESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~-~~~~~l~~gG~l~i~~~~ 145 (222)
..-. . ..++. .....+|+|++++.....
T Consensus 256 taTG-----~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 256 TATG-----N-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ECCC-----C-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 6332 2 33443 477889999988776544
No 394
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.00 E-value=13 Score=29.17 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=61.6
Q ss_pred hhCCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCe-eEEeC-CCCC-c-CC
Q 027517 29 WSGAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEG-DALD-L-PF 102 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~-d~~~-~-~~ 102 (222)
.....++.+||=.|+ |-|..+..+++.. +.++++++.+++..+.+++.+.. ..+ ..... +..+ + ..
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~ 217 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKLGF------DDAFNYKEEPDLDAALKRY 217 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCC------ceeEEcCCcccHHHHHHHh
Confidence 345678889999886 3477778888875 56899988888877777653211 111 11111 1111 0 11
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+.+|+|+-... ...+....+.|+++|+++...
T Consensus 218 ~~~gvd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 218 FPNGIDIYFDNVG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CCCCcEEEEECCC-------HHHHHHHHHHhccCcEEEEec
Confidence 1245888875332 245677888999999988654
No 395
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=86.97 E-value=15 Score=29.96 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=59.2
Q ss_pred CCCCCCeEEEec-CC-CChhHHHHHHHhCCC-CcEEEEeCChhHHHHHhcchhhhhhh-cCCCeeEEeC----CCCC-c-
Q 027517 31 GAKTGDNVLDVC-CG-SGDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKA-CYKNIEWVEG----DALD-L- 100 (222)
Q Consensus 31 ~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~----d~~~-~- 100 (222)
...++.+|+=+| +| -|..+..+++..+.+ .+++++|.+++.++.+++........ + ....++.. +... .
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G-a~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRG-IELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccC-ceEEEECCCccccHHHHHH
Confidence 456778898887 45 377777777764322 26999999999888887752110000 0 01111211 1111 0
Q ss_pred C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
. .....+|+|+-... . ...+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 0 12235888876321 1 34667778889988876553
No 396
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.91 E-value=5.7 Score=30.65 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=54.9
Q ss_pred CeEEEecCCCChh--HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc--------------CCCeeEEeCCCCC
Q 027517 36 DNVLDVCCGSGDL--SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------YKNIEWVEGDALD 99 (222)
Q Consensus 36 ~~vLdiG~G~G~~--~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~d~~~ 99 (222)
.+|-=||+|+-.. +..++. .+.+|+.+|.+++.++.+.++....-... ..+++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR---AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH
Confidence 4788899996333 333332 46799999999999988766543211000 01122 1223322
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhccc-CCCcEEEE
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVL-KPGSRISV 141 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l-~~gG~l~i 141 (222)
+ ...|+|+-. +.+..+-...++..+.+.+ +|+..+.-
T Consensus 82 ~----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 82 F----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred h----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1 346877754 3344444566777788777 66655543
No 397
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.68 E-value=4.5 Score=31.37 Aligned_cols=90 Identities=17% Similarity=0.040 Sum_probs=52.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+.+|+=+|+|. |......++.+ +.+++.+|.+++..+.++.. ...+. +..++...-..+|+|+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~----------G~~~~--~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEM----------GLSPF--HLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHc----------CCeee--cHHHHHHHhCCCCEEEE
Confidence 478999999986 44455555554 56999999998765555432 12222 11121111135899998
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.-.. ..+-++..+.++||+.++-.-
T Consensus 217 t~p~------~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 217 TIPA------LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCCh------hhhhHHHHHcCCCCcEEEEEc
Confidence 5321 123355667788987665443
No 398
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.64 E-value=4.3 Score=31.17 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=52.1
Q ss_pred eEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh----hhhc----------CCCeeEEeCCCCCc
Q 027517 37 NVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV----SKAC----------YKNIEWVEGDALDL 100 (222)
Q Consensus 37 ~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~----~~~~----------~~~i~~~~~d~~~~ 100 (222)
+|-=+|+|. +..+..+++ .+.+|+++|.+++.++.++.+.... ...+ ..++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~---~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAV---AGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHH---CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 677889986 333344443 3568999999999887655332111 0000 012221 223222
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
-...|+|+..- .....-...+++++.+.++|+..+
T Consensus 80 ---~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 80 ---LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred ---hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEE
Confidence 13468887643 122222357888999888888666
No 399
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.61 E-value=2.6 Score=33.26 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=53.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCC--CC-ceeEEE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFS--DC-FFDAIT 111 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~-~~D~v~ 111 (222)
..+++|+-||-|.+..-+... + -.-+.++|+++.+++.=+.+. +...++..|+...... .. .+|+++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEE
Confidence 358999999999999887765 2 225789999999888877665 2245566666654321 11 689999
Q ss_pred EcccccCc
Q 027517 112 MGYGLRNV 119 (222)
Q Consensus 112 ~~~~l~~~ 119 (222)
.......+
T Consensus 73 gGpPCQ~F 80 (328)
T COG0270 73 GGPPCQDF 80 (328)
T ss_pred eCCCCcch
Confidence 87776665
No 400
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.51 E-value=8.3 Score=30.68 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v 110 (222)
.++.+|+-.|+|. |..+..+++.. +.+++.++.+++..+.+.+.+.. . .++. .+...+......+|+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~~~Ga-------~-~~i~~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALEHLGA-------D-DYLVSSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhcCC-------c-EEecCCChHHHHHhcCCCcEE
Confidence 4677888888765 66677777775 55788888777655444332210 0 1111 1111111011247877
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
+-... ....+....+.++++|+++.....
T Consensus 249 id~~g------~~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 249 IDTVP------VFHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred EECCC------chHHHHHHHHHhccCCEEEEECCC
Confidence 75322 123566777889999998876543
No 401
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=86.25 E-value=12 Score=29.79 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=59.5
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC-----CCC-c-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-----ALD-L- 100 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-----~~~-~- 100 (222)
....++.+||=.|+|. |..+..+++.. +. ++++++.+++.++.+++.- ...++... ..+ +
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~--G~~~vi~~~~~~~~~~~~~~~G---------a~~~i~~~~~~~~~~~~v~ 251 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIR--GASRIIGVDLNPSKFEQAKKFG---------VTEFVNPKDHDKPVQEVIA 251 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcC---------CceEEcccccchhHHHHHH
Confidence 4567788999998764 56667777774 44 7999999998888775531 11111111 000 0
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
....+.+|+++-... . ...+....+.+++| |++++....
T Consensus 252 ~~~~~~~d~vid~~G-----~-~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 252 EMTGGGVDYSFECTG-----N-IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred HHhCCCCCEEEECCC-----C-hHHHHHHHHHhhcCCCEEEEECcC
Confidence 011225787774321 1 34566677788996 998776543
No 402
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.05 E-value=3.7 Score=31.62 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=53.2
Q ss_pred eEEEecCCC-Ch-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhc--------------CCCeeEEeCCCCCc
Q 027517 37 NVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKAC--------------YKNIEWVEGDALDL 100 (222)
Q Consensus 37 ~vLdiG~G~-G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~d~~~~ 100 (222)
+|.=||+|. |. .+..+++ .+.+|+.+|.+++.++.+.++........ ..++.. ..+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV---SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 678889885 32 2333332 35689999999999988776432211000 011221 1222211
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
-...|+|+..-. ....-...++.++.+.++|+..+.+.
T Consensus 79 ---~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 79 ---VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred ---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 134688886432 22222346677888888887655443
No 403
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=86.03 E-value=0.42 Score=38.42 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=50.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC
Q 027517 32 AKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD 99 (222)
Q Consensus 32 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 99 (222)
..++..|.|+-||-|-++..+++. ++.|++.|.++++++..+.+........ .++++...|+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~-~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDP-SAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccch-hheeeecccHHH
Confidence 357889999999999999998865 5899999999999999988765433221 247777777655
No 404
>PLN02494 adenosylhomocysteinase
Probab=85.85 E-value=3.3 Score=34.28 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=55.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
-.+++|+=+|+|. |......++.+ +.+|+++|.++.....+... ...+. ++.+. . ...|+|+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~----------G~~vv--~leEa-l--~~ADVVI 314 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALME----------GYQVL--TLEDV-V--SEADIFV 314 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhc----------CCeec--cHHHH-H--hhCCEEE
Confidence 3578999999997 66666666654 56899999988643333221 11111 22221 1 2469888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
..-.-. ..+.....+.||+||+++.+..
T Consensus 315 ~tTGt~-----~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 315 TTTGNK-----DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ECCCCc-----cchHHHHHhcCCCCCEEEEcCC
Confidence 733222 2233667778999999987654
No 405
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.79 E-value=3.7 Score=31.50 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=47.5
Q ss_pred eEEEecCCC-C-hhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 37 NVLDVCCGS-G-DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~G~-G-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+|.-||+|. | .++..+.+. +.+|+++|.+++.++.+.+.- .+.....+. + . -...|+|+..-
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~~g---------~~~~~~~~~-~--~-~~~aDlVilav 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIERG---------LVDEASTDL-S--L-LKDCDLVILAL 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHCC---------CcccccCCH-h--H-hcCCCEEEEcC
Confidence 566788875 3 344444432 568999999998887766541 111111111 1 1 13469988865
Q ss_pred cccCcccHHHHHHHHhcccCCCc
Q 027517 115 GLRNVVDKRKALEESFRVLKPGS 137 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG 137 (222)
... ....+++++...++++.
T Consensus 66 p~~---~~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 66 PIG---LLLPPSEQLIPALPPEA 85 (279)
T ss_pred CHH---HHHHHHHHHHHhCCCCc
Confidence 432 23456777777777763
No 406
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=85.72 E-value=16 Score=29.15 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=59.2
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCe-eEEeCC--CCC-c-CC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEGD--ALD-L-PF 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d--~~~-~-~~ 102 (222)
....++.+||=.|+|. |..+..+++.. +. +++++|.+++..+.+++.-. ..+ .....+ ..+ + ..
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~~~~~ga-------~~~i~~~~~~~~~~~~~~~~ 250 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIA--GASRIIGVDINEDKFEKAKEFGA-------TDFINPKDSDKPVSEVIREM 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcCC-------CcEeccccccchHHHHHHHH
Confidence 3556788999888764 55666777774 45 69999998888877754311 011 111000 000 0 01
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecC
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFN 145 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~ 145 (222)
..+.+|+|+-... . ...+....+.++++ |++++....
T Consensus 251 ~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 251 TGGGVDYSFECTG-----N-ADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred hCCCCCEEEECCC-----C-hHHHHHHHHhcccCCCEEEEEcCC
Confidence 1235888885322 1 24566777888885 998776543
No 407
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.70 E-value=15 Score=28.62 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=53.9
Q ss_pred CeEEEecCCC-Chh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcc--hhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 36 DNVLDVCCGS-GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSR--QDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 36 ~~vLdiG~G~-G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.+|+-+|+|. |.+ +..|++. +..|+.++-+++.++..++. +..... ............ +.+.+.+|+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~~Gl~i~~~---g~~~~~~~~~~~-~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQAGGLTLVEQ---GQASLYAIPAET-ADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhcCCeEEeeC---CcceeeccCCCC-cccccccCEEE
Confidence 4789999996 554 4445433 45899999877666655432 110000 011111111111 11234689888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
..-=-+ +...+++.+...+.++..++..
T Consensus 76 v~vK~~---~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 76 LACKAY---DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred EECCHH---hHHHHHHHHHhhCCCCCEEEEE
Confidence 744222 3466788888999998876554
No 408
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.62 E-value=12 Score=28.14 Aligned_cols=74 Identities=8% Similarity=0.027 Sum_probs=43.6
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C-----C
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 103 (222)
++++|-.|++ |.....+++.+ ..+.+|+.++.+++.++...+.. + .++.++..|+.+.. + .
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G----ERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578888854 44444444433 23568999998876544433322 1 35778888887632 0 0
Q ss_pred CCceeEEEEcccc
Q 027517 104 DCFFDAITMGYGL 116 (222)
Q Consensus 104 ~~~~D~v~~~~~l 116 (222)
.+..|+++.+...
T Consensus 78 ~g~id~lv~~ag~ 90 (261)
T PRK08265 78 FGRVDILVNLACT 90 (261)
T ss_pred hCCCCEEEECCCC
Confidence 1357888876543
No 409
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.49 E-value=5.8 Score=32.49 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=55.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+++|+=+|+|. |......++.+ +.+|+.+|.++.....+... ...+ .++.+. -...|+|+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~----------G~~v--~~l~ea---l~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD----------GFRV--MTMEEA---AELGDIFVT 273 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc----------CCEe--cCHHHH---HhCCCEEEE
Confidence 678999999997 55555556554 56899999988654333221 1111 122221 124799887
Q ss_pred cccccCcccHHHHHH-HHhcccCCCcEEEEEecCC
Q 027517 113 GYGLRNVVDKRKALE-ESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~-~~~~~l~~gG~l~i~~~~~ 146 (222)
.-. . ..++. ...+.+|+|++++......
T Consensus 274 aTG-----~-~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 274 ATG-----N-KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CCC-----C-HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 431 2 33444 6778899999887765443
No 410
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.40 E-value=2.5 Score=33.18 Aligned_cols=97 Identities=13% Similarity=0.000 Sum_probs=54.9
Q ss_pred CCeEEEecCCC-Ch-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhh----h------cCCCeeEEeCCCCCcCC
Q 027517 35 GDNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSK----A------CYKNIEWVEGDALDLPF 102 (222)
Q Consensus 35 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~----~------~~~~i~~~~~d~~~~~~ 102 (222)
-.+|-=||+|+ |. ++..++. .+.+|+.+|.+++.++.++.++...-. . ...++.+. .++.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~---aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--- 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA---HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--- 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---
Confidence 45788999996 33 3333442 477999999999988776554322100 0 00122211 12111
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
.-...|+|+-+ +.+...-...+++++-+.++|+..+
T Consensus 80 av~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 80 CVADADFIQES-APEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred HhcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEE
Confidence 11235777763 2333334567889999999998744
No 411
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=85.36 E-value=4.7 Score=24.14 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=23.3
Q ss_pred CCCCeEEEecCCCCh-hHHHHHHHhCCCCcEEEEeCC
Q 027517 33 KTGDNVLDVCCGSGD-LSFLLSEQVGSQGKVIGLDFS 68 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~~~~~D~~ 68 (222)
..+++||-+||.+|. ++.+++..++.+...+++.+.
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 445799999999995 456777777777788888763
No 412
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=85.35 E-value=16 Score=28.76 Aligned_cols=103 Identities=19% Similarity=0.281 Sum_probs=64.7
Q ss_pred hhCCCCCCeEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-CC-C
Q 027517 29 WSGAKTGDNVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PF-S 103 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~-~ 103 (222)
..+..++.+||=.|+.. |.++..+++.+ +..++++--+++-.+.+++.-+. .-+.+...|+.+ . .. .
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~~lGAd------~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLKELGAD------HVINYREEDFVEQVRELTG 208 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHhcCCC------EEEcCCcccHHHHHHHHcC
Confidence 45667789999998544 67788888886 33666666677666665555321 112233333322 1 12 2
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCC
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
...+|+|+-.-. ...+.+....|+++|+++......
T Consensus 209 g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 209 GKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEecCC
Confidence 246999997543 445666888899999998866544
No 413
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=85.20 E-value=6 Score=31.79 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=54.8
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhH-HHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQ-LSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDA 109 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~ 109 (222)
.++.+|+-.|+|. |..+..+++.. +.++++++.+++. .+.+++. + --.++. .+...+....+.+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~a~~l----G-----a~~~i~~~~~~~v~~~~~~~D~ 245 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAIDRL----G-----ADSFLVTTDSQKMKEAVGTMDF 245 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHHHHhC----C-----CcEEEcCcCHHHHHHhhCCCcE
Confidence 4678899888875 66677778775 5578888877543 4444332 1 001111 110111000124788
Q ss_pred EEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 110 ITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
|+-... ....+....+.++++|+++....
T Consensus 246 vid~~G------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 246 IIDTVS------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEECCC------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 875322 13356777888999999987654
No 414
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=85.10 E-value=3.2 Score=28.76 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=34.4
Q ss_pred HHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhHhhcCCHHHHHHHHHHcCC
Q 027517 123 RKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSIREFLTGKDLEKLALEIGF 202 (222)
Q Consensus 123 ~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 202 (222)
..+++-+.+.|.|||.+++.-..... ....+. ... ......+...|.++||
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~D~e------T~~~L~---------------------~G~--pp~~TrLG~~Ll~~GF 116 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVEDRE------TRRQLQ---------------------RGV--PPAETRLGFSLLKAGF 116 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT-HH------HHHHHH---------------------TT----GGGSHHHHHHHTTT-
T ss_pred HHHHHHHHHHhhhcCeEEEEEecCHH------HHHHHH---------------------cCC--CcccchhHHHHHhCCc
Confidence 57888999999999999775332211 000000 000 1122356788999999
Q ss_pred eEEEEeeecCCe---eeeEeeeC
Q 027517 203 SRAKHYELSGGL---MGNLVATR 222 (222)
Q Consensus 203 ~~~~~~~~~~~~---~~~~~~~k 222 (222)
+..+-+.++.|. ...++|.|
T Consensus 117 twfKdWYfPEG~~EGg~KlQa~K 139 (170)
T PF06557_consen 117 TWFKDWYFPEGGMEGGPKLQAEK 139 (170)
T ss_dssp -EEEEEE--TTTSTT-EEEEEE-
T ss_pred EEEeeeeccCccccCCceeeeec
Confidence 999988887653 22455543
No 415
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=85.01 E-value=11 Score=29.44 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHH
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQL 72 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~ 72 (222)
.++.+|+-+|+|. |......+... ...+++.++.+++..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~~~ra 215 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRTYERA 215 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCHHHH
Confidence 4678999999976 44433333331 234799999887644
No 416
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=84.96 E-value=15 Score=29.31 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=55.8
Q ss_pred CCCCCeEEEecCC-CChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc------CCC
Q 027517 32 AKTGDNVLDVCCG-SGDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL------PFS 103 (222)
Q Consensus 32 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~~~ 103 (222)
..++.+||-.|+| .|..+..+++.. +.+ +++++.+++..+.+++.- -..++..+-.+. ..+
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~--G~~~vi~~~~s~~~~~~~~~~g---------~~~v~~~~~~~~~~~l~~~~~ 253 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAF--GASPIIAVDVRDEKLAKAKELG---------ATHTVNAAKEDAVAAIREITG 253 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHhC---------CceEecCCcccHHHHHHHHhC
Confidence 3567788877765 356666777764 456 888988887766664321 111222111111 112
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
...+|+|+..-. . ...+....+.|+++|+++...
T Consensus 254 ~~~~d~vld~vg-----~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 254 GRGVDVVVEALG-----K-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCEEEEeCC-----C-HHHHHHHHHHHhcCCEEEEEc
Confidence 345898885322 1 125677888999999987654
No 417
>PRK12939 short chain dehydrogenase; Provisional
Probab=84.92 E-value=8.1 Score=28.59 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=46.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CC----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS---- 103 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 103 (222)
+++++|=.|+ +|.....+++.+. .+.+++.++.+++.++...+...... .++.+...|+.+.. +.
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG----GRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3567887775 5555555554432 35688888887766555444332211 46888888987632 00
Q ss_pred -CCceeEEEEcccc
Q 027517 104 -DCFFDAITMGYGL 116 (222)
Q Consensus 104 -~~~~D~v~~~~~l 116 (222)
.++.|.++.+...
T Consensus 81 ~~~~id~vi~~ag~ 94 (250)
T PRK12939 81 ALGGLDGLVNNAGI 94 (250)
T ss_pred HcCCCCEEEECCCC
Confidence 1357988876553
No 418
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.83 E-value=5.8 Score=34.96 Aligned_cols=99 Identities=13% Similarity=0.042 Sum_probs=60.0
Q ss_pred CeEEEecCCCChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--------------hhcCCCeeEEeCCCCCc
Q 027517 36 DNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--------------KACYKNIEWVEGDALDL 100 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~d~~~~ 100 (222)
.+|.=||+|+-.... .+... .+.+|+.+|.+++.++.+..+....- .....++.+. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 579999999843333 33322 47799999999999988766543211 0000223322 222221
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...|+|+=. +.+.++-...+++++-+.++|+.+|.-.
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasN 427 (715)
T PRK11730 391 ----ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASN 427 (715)
T ss_pred ----cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 346777642 3444555678999999999999777543
No 419
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=84.82 E-value=17 Score=28.34 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=57.6
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
...+..++.+||=.|+|. |..+..+++.. +.+++.++.+++..+.+++. .+.... +.... +.+.
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~--g~~v~~~~~~~~~~~~~~~~----------g~~~~~-~~~~~--~~~~ 225 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ--GAEVFAFTRSGEHQELAREL----------GADWAG-DSDDL--PPEP 225 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEcCChHHHHHHHHh----------CCcEEe-ccCcc--CCCc
Confidence 344566777888887764 44555666663 56889998888766666432 111111 11111 2345
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+++.+.. ....+....+.++++|+++...
T Consensus 226 vD~vi~~~~------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 226 LDAAIIFAP------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ccEEEEcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence 788775321 1246788899999999998754
No 420
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.70 E-value=8.7 Score=28.34 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=45.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----------P 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----------~ 101 (222)
..+.||-.||..|.....+++.+. .+..|++.--+-+-....... .++.....|+.+. .
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~---------~gl~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ---------FGLKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh---------hCCeeEEeccCChHHHHHHHHHHhh
Confidence 356899999999999998888764 345777776544433332222 2455566666542 2
Q ss_pred CCCCceeEEEEcc
Q 027517 102 FSDCFFDAITMGY 114 (222)
Q Consensus 102 ~~~~~~D~v~~~~ 114 (222)
+++++.|+.+.+.
T Consensus 77 ~~~Gkld~L~NNA 89 (289)
T KOG1209|consen 77 NPDGKLDLLYNNA 89 (289)
T ss_pred CCCCceEEEEcCC
Confidence 4567888887443
No 421
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=84.63 E-value=1.5 Score=31.16 Aligned_cols=90 Identities=19% Similarity=0.100 Sum_probs=51.4
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
-.+++|.-+|+|. |......++.+ +.+|+++|.+...-...... .+ ...++.++ -...|+|+
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~~----------~~--~~~~l~el---l~~aDiv~ 96 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADEF----------GV--EYVSLDEL---LAQADIVS 96 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHHT----------TE--EESSHHHH---HHH-SEEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhcccc----------cc--eeeehhhh---cchhhhhh
Confidence 3578999999986 77777777765 56999999988765411111 12 22233332 13468888
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
....+..-.. .-+=++..+.||+|.+++
T Consensus 97 ~~~plt~~T~-~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 97 LHLPLTPETR-GLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp E-SSSSTTTT-TSBSHHHHHTSTTTEEEE
T ss_pred hhhccccccc-eeeeeeeeeccccceEEE
Confidence 8776532211 111234556678777654
No 422
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.50 E-value=8.1 Score=32.95 Aligned_cols=92 Identities=17% Similarity=0.149 Sum_probs=53.7
Q ss_pred CeEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEE
Q 027517 36 DNVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAI 110 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v 110 (222)
.+++=+|||. ....+++.+. .+.+++.+|.+++..+.+++. ....+.+|..+.. ..-++.|.+
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~----------g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER----------GIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC----------CCeEEEcCCCCHHHHHhcCccccCEE
Confidence 4677777765 4444444332 356899999999988887653 5788999988742 222467866
Q ss_pred EEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 111 TMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+..-. .-.+...+...+ +...|+..++..
T Consensus 486 iv~~~--~~~~~~~iv~~~-~~~~~~~~iiar 514 (558)
T PRK10669 486 LLTIP--NGYEAGEIVASA-REKRPDIEIIAR 514 (558)
T ss_pred EEEcC--ChHHHHHHHHHH-HHHCCCCeEEEE
Confidence 65321 111111233333 444666666553
No 423
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=84.26 E-value=18 Score=28.31 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=59.5
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---CCCC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP---FSDC 105 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~ 105 (222)
....++.+||=.|+|. |..+..+++.. +.+++.++.+++.++.+++.-. -.++...-.++. ....
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~g~---------~~~i~~~~~~~~~~~~~~~ 227 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARKLGA---------HHYIDTSKEDVAEALQELG 227 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHcCC---------cEEecCCCccHHHHHHhcC
Confidence 3566788999998764 66667777775 5579999988877777754311 111111111110 0012
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+|+++.... ....+....+.++++|+++....
T Consensus 228 ~~d~vi~~~g------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 228 GAKLILATAP------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CCCEEEECCC------chHHHHHHHHHcccCCEEEEEec
Confidence 4788875321 13467778889999999887644
No 424
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=84.23 E-value=6 Score=34.77 Aligned_cols=100 Identities=10% Similarity=-0.086 Sum_probs=59.6
Q ss_pred CeEEEecCCCChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh----h----------hcCCCeeEEeCCCCCc
Q 027517 36 DNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS----K----------ACYKNIEWVEGDALDL 100 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~----~----------~~~~~i~~~~~d~~~~ 100 (222)
.+|.=||+|+-.... .+... ..+.+|+.+|.+++.++.+..+....- . ....++.+. .|...+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTAT-KAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRGF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHHh
Confidence 478999999844433 22221 136799999999999888766543210 0 001233322 232221
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...|+|+=. +.+.++-...+++++-+.++|+.+|.-.
T Consensus 383 ----~~adlViEa-v~E~l~~K~~v~~~l~~~~~~~~ilasn 419 (699)
T TIGR02440 383 ----KDVDIVIEA-VFEDLALKHQMVKDIEQECAAHTIFASN 419 (699)
T ss_pred ----ccCCEEEEe-ccccHHHHHHHHHHHHhhCCCCcEEEeC
Confidence 346777643 3444445678899999999998777543
No 425
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.20 E-value=3.2 Score=34.13 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=46.8
Q ss_pred CCeEEEecCCCChhHHHHHHHhCC-CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeE
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGS-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDA 109 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~ 109 (222)
..+++=+|+| ..+..+++.+.. +..++.+|.+++.++..++.. ..+.++.+|..+.. ..-..+|.
T Consensus 231 ~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~--------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL--------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC--------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 5688888885 455555554432 568999999999887766543 35678888887632 22346788
Q ss_pred EEEcc
Q 027517 110 ITMGY 114 (222)
Q Consensus 110 v~~~~ 114 (222)
|++..
T Consensus 301 vi~~~ 305 (453)
T PRK09496 301 FIALT 305 (453)
T ss_pred EEECC
Confidence 87643
No 426
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.15 E-value=18 Score=28.32 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=52.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~v~ 111 (222)
|..+|.-+|+|. |....+.+...+...++..+|+.++..+-...-+..... ......+.. .|..++ ...|+|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-~~~~~~v~~~~dy~~~----~~adivv 76 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-FLKNPKIEADKDYSVT----ANSKVVI 76 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-cCCCCEEEECCCHHHh----CCCCEEE
Confidence 456899999986 555444444433344799999987543222111111110 001123332 454443 2368888
Q ss_pred EcccccCccc--H-----------HHHHHHHhcccCCCcEEEEE
Q 027517 112 MGYGLRNVVD--K-----------RKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 112 ~~~~l~~~~~--~-----------~~~l~~~~~~l~~gG~l~i~ 142 (222)
.......-+. + ..+.+.+.+. .|+|++++.
T Consensus 77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivv 119 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVV 119 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEc
Confidence 7554432221 1 2334444444 678887664
No 427
>PRK07806 short chain dehydrogenase; Provisional
Probab=84.15 E-value=15 Score=27.23 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=55.7
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChh-HHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC----------
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKN-QLSMASSRQDLVSKACYKNIEWVEGDALDLPF---------- 102 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---------- 102 (222)
++++|-.|++ |.....+++.+ ..+.+|++++-+.. ..+.....+...+ .++.++..|+.+...
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG----GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678888853 44555554433 24567888765432 2332222221111 357788888876320
Q ss_pred CCCceeEEEEcccccCcc-------------cHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVV-------------DKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~-------------~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+..|+++.+....... -...+++.+.+.++.+|.+++..
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 013578888665432110 13456677777776667766543
No 428
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=84.14 E-value=3 Score=28.10 Aligned_cols=78 Identities=13% Similarity=0.016 Sum_probs=42.6
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
.-.+.++|=+|+|. |......+... +. +++.+.-+.+-.+...+.+ +. .++.....+ ++......+|+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~---~~---~~~~~~~~~--~~~~~~~~~Di 78 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF---GG---VNIEAIPLE--DLEEALQEADI 78 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH---TG---CSEEEEEGG--GHCHHHHTESE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc---Cc---cccceeeHH--HHHHHHhhCCe
Confidence 34678999999875 33333333332 33 5999987765444433332 10 245554433 33211246999
Q ss_pred EEEcccccCc
Q 027517 110 ITMGYGLRNV 119 (222)
Q Consensus 110 v~~~~~l~~~ 119 (222)
|+..-+..+.
T Consensus 79 vI~aT~~~~~ 88 (135)
T PF01488_consen 79 VINATPSGMP 88 (135)
T ss_dssp EEE-SSTTST
T ss_pred EEEecCCCCc
Confidence 9987665544
No 429
>PRK07109 short chain dehydrogenase; Provisional
Probab=84.11 E-value=17 Score=28.65 Aligned_cols=77 Identities=12% Similarity=-0.038 Sum_probs=46.5
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------CC
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------FS 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 103 (222)
+++||-.|++ |.....+++.+ ..+.+|+.++-+++.++...+.+...+ .++.++..|+.+.. ..
T Consensus 8 ~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 8 RQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578888854 44444444333 245689999988877665554443222 46778888887632 00
Q ss_pred CCceeEEEEcccc
Q 027517 104 DCFFDAITMGYGL 116 (222)
Q Consensus 104 ~~~~D~v~~~~~l 116 (222)
-++.|+++.+...
T Consensus 83 ~g~iD~lInnAg~ 95 (334)
T PRK07109 83 LGPIDTWVNNAMV 95 (334)
T ss_pred CCCCCEEEECCCc
Confidence 1358998876654
No 430
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.01 E-value=7.5 Score=34.31 Aligned_cols=101 Identities=9% Similarity=0.010 Sum_probs=61.1
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh--------------cCCCeeEEeCCCCCc
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--------------CYKNIEWVEGDALDL 100 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~d~~~~ 100 (222)
-.+|-=||+|+-.......-. ..+.+|+.+|.+++.++.+.++....-.. ...++... .|...+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF 390 (714)
T ss_pred cceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 347899999984443322222 24779999999999998877655321100 00122221 122111
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
...|+|+=. +.+.++-...+++++-+.++|+.+|.-.
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasn 427 (714)
T TIGR02437 391 ----DNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASN 427 (714)
T ss_pred ----cCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 346777743 3455555688999999999999777543
No 431
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.88 E-value=7.5 Score=34.26 Aligned_cols=100 Identities=12% Similarity=-0.036 Sum_probs=60.6
Q ss_pred CCeEEEecCCC-ChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhh--------------hhcCCCeeEEeCCCC
Q 027517 35 GDNVLDVCCGS-GDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVS--------------KACYKNIEWVEGDAL 98 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~d~~ 98 (222)
-.+|.=||+|+ |.-.. .++.. .+.+|+.+|.+++.++.+..+....- .....++.+. .|..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~ 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH
Confidence 35799999998 33333 33323 36799999999999888766543210 0001233332 2221
Q ss_pred CcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.+ ...|+|+=. +.+.++-...+++++-+.++|+.+|.-.
T Consensus 386 ~~----~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasn 424 (708)
T PRK11154 386 GF----KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASN 424 (708)
T ss_pred Hh----ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 11 246777643 3445555678999999999999777543
No 432
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=83.64 E-value=13 Score=30.52 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=25.8
Q ss_pred CeEEEecCCCChhH--HHHHHHhCCCCcEEEEeCChhHHHHHh
Q 027517 36 DNVLDVCCGSGDLS--FLLSEQVGSQGKVIGLDFSKNQLSMAS 76 (222)
Q Consensus 36 ~~vLdiG~G~G~~~--~~l~~~~~~~~~~~~~D~~~~~~~~~~ 76 (222)
.+|.=+|.|..... ..+++ .+.+|+++|.+++.++..+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHH
Confidence 46777888864333 33333 3568999999999887643
No 433
>PRK06181 short chain dehydrogenase; Provisional
Probab=83.63 E-value=9.8 Score=28.53 Aligned_cols=76 Identities=12% Similarity=0.019 Sum_probs=43.9
Q ss_pred CeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC----------CC
Q 027517 36 DNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF----------SD 104 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 104 (222)
.+||-.| |+|.....+++.+ ..+.+|+.++.++...+...+.+...+ .++.+...|+.+... .-
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG----GEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3577666 4455555544332 245689999988766554443332211 467788888876320 01
Q ss_pred CceeEEEEcccc
Q 027517 105 CFFDAITMGYGL 116 (222)
Q Consensus 105 ~~~D~v~~~~~l 116 (222)
+..|.|+.+...
T Consensus 77 ~~id~vi~~ag~ 88 (263)
T PRK06181 77 GGIDILVNNAGI 88 (263)
T ss_pred CCCCEEEECCCc
Confidence 357998876554
No 434
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.52 E-value=20 Score=28.27 Aligned_cols=101 Identities=20% Similarity=0.210 Sum_probs=60.0
Q ss_pred HhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe---CCCCC-c-
Q 027517 28 SWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE---GDALD-L- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~d~~~-~- 100 (222)
......++.+||=.|+|. |..+..+++.. +. .+++++.+++..+.+++.-. . .++. .+..+ +
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~~ga--------~-~~i~~~~~~~~~~l~ 234 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEELGA--------T-IVLDPTEVDVVAEVR 234 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCC--------C-EEECCCccCHHHHHH
Confidence 334556778888888653 55566677764 55 78899988887777654310 1 1111 11110 1
Q ss_pred C-CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 101 P-FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 101 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
. ...+.+|+|+-+..- ...++...+.|+++|.++.....
T Consensus 235 ~~~~~~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 235 KLTGGGGVDVSFDCAGV------QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred HHhCCCCCCEEEECCCC------HHHHHHHHHhccCCCEEEEEccC
Confidence 0 122348988864321 23567788899999998776543
No 435
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.43 E-value=18 Score=27.88 Aligned_cols=96 Identities=15% Similarity=0.002 Sum_probs=50.1
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 37 NVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 37 ~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
+|.=+|+|. |......+.. .+.+|+.++.+++.++..++.-.... . ........-..+.. ..+.+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~g~~~~-~--~~~~~~~~~~~~~~-~~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARRGAHLDALNENGLRLE-D--GEITVPVLAADDPA-ELGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCeEEEEECChHHHHHHHHcCCccc-C--CceeecccCCCChh-HcCCCCEEEEecc
Confidence 578899886 3333322222 24689999987776665544311000 0 01110000011111 1156899887554
Q ss_pred ccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 116 LRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 116 l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
-. +...+++.+...+.++..++.
T Consensus 76 ~~---~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 76 AY---QLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred cc---cHHHHHHHHhhhcCCCCEEEE
Confidence 32 346678888888877766554
No 436
>PRK08324 short chain dehydrogenase; Validated
Probab=82.98 E-value=14 Score=32.42 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=59.5
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C-----
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F----- 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 102 (222)
++++||-.|++ |.....+++.+ ..+.+|+.+|.+++.++.....+... .++.++..|+.+.. +
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 35688888853 33433333332 23568999999887766554433211 26778888877632 1
Q ss_pred CCCceeEEEEcccccCccc-------------------HHHHHHHHhcccCC---CcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVVD-------------------KRKALEESFRVLKP---GSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~l~~---gG~l~i~~ 143 (222)
..+..|+|+.+........ ...+++.+.+.+++ +|.+++..
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1135899987765432210 23445566666655 57776654
No 437
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=82.85 E-value=15 Score=28.34 Aligned_cols=84 Identities=10% Similarity=-0.006 Sum_probs=40.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc---CCCCCcee
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL---PFSDCFFD 108 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 108 (222)
.++++|=+|+| | .+..++..+ ..+. +++.++.+++..+.+++........ ...+.+...|..+. ...-..+|
T Consensus 125 ~~k~vlI~GAG-G-agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~-~~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 125 KGKKLTVIGAG-G-AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE-VPECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CCCEEEEECCc-H-HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc-CCCceeEEechhhhhHHHhhhccCC
Confidence 45689999986 3 333333221 2344 4999988763223333222211110 02333444454432 11113579
Q ss_pred EEEEcccccCcc
Q 027517 109 AITMGYGLRNVV 120 (222)
Q Consensus 109 ~v~~~~~l~~~~ 120 (222)
+|+.+-++...+
T Consensus 202 ilINaTp~Gm~~ 213 (289)
T PRK12548 202 ILVNATLVGMKP 213 (289)
T ss_pred EEEEeCCCCCCC
Confidence 999877766443
No 438
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=82.76 E-value=14 Score=25.89 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=57.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-CC---CCcee
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-FS---DCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~---~~~~D 108 (222)
.+..+|+-|||=+- -..+.+...++.++..+|++...-... .+ .+..-|..... ++ .++||
T Consensus 24 ~~~~~iaclstPsl--~~~l~~~~~~~~~~~Lle~D~RF~~~~------------~~-~F~fyD~~~p~~~~~~l~~~~d 88 (162)
T PF10237_consen 24 LDDTRIACLSTPSL--YEALKKESKPRIQSFLLEYDRRFEQFG------------GD-EFVFYDYNEPEELPEELKGKFD 88 (162)
T ss_pred CCCCEEEEEeCcHH--HHHHHhhcCCCccEEEEeecchHHhcC------------Cc-ceEECCCCChhhhhhhcCCCce
Confidence 35679999998663 333443223566899999987543221 12 34455554421 11 46899
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+|++--.+-.-+-.....+.++.++++++.+++.
T Consensus 89 ~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 89 VVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 9999877732222345556666677888888765
No 439
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=82.67 E-value=3.5 Score=31.73 Aligned_cols=49 Identities=10% Similarity=0.227 Sum_probs=37.2
Q ss_pred hCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhh
Q 027517 30 SGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDL 81 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (222)
+....+.+|.-+|+|.......+.+. | .+|.++|+++..+...+-+++.
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHH
Confidence 34466789999999877666666654 3 5999999999988887766654
No 440
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=82.64 E-value=20 Score=28.10 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-CCCCCcee
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-PFSDCFFD 108 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D 108 (222)
...++.+|+=.|+|. |..+..+++.. +.+++.++.+++..+.+++.-. . .++...-.+. ....+.+|
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~-------~--~vi~~~~~~~~~~~~~~~d 234 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAKAL--GAEVTAFSRSPSKKEDALKLGA-------D--EFIATKDPEAMKKAAGSLD 234 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHcCC-------c--EEecCcchhhhhhccCCce
Confidence 456677777777754 55566667664 5589999988877777653210 0 1111110010 11124588
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+++....- ...+....+.|+++|+++....
T Consensus 235 ~v~~~~g~------~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 235 LIIDTVSA------SHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred EEEECCCC------cchHHHHHHHhcCCCEEEEEec
Confidence 88853321 1235667788899999876543
No 441
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.37 E-value=13 Score=28.66 Aligned_cols=96 Identities=19% Similarity=0.016 Sum_probs=52.0
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh-------hhhc----------CCCeeEEeCCC
Q 027517 36 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV-------SKAC----------YKNIEWVEGDA 97 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-------~~~~----------~~~i~~~~~d~ 97 (222)
.+|.=+|+|. |.-....+.. .+.+|+.+|.+++.++.++++.... .... ..++... .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 4688899996 3333333322 3568999999999988765543210 0000 0111111 122
Q ss_pred CCcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEE
Q 027517 98 LDLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 98 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
.. -...|+|+..- .........+++++.+.++|+..+
T Consensus 81 ~~----~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il 117 (291)
T PRK06035 81 ES----LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETII 117 (291)
T ss_pred HH----hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEE
Confidence 11 13368887643 222222466788888888877654
No 442
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.27 E-value=22 Score=27.76 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=39.6
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 37 NVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 37 ~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
+|.=+|||. |......+...+...++..+|.+++..+.....+..........+.+...+..++ ...|+|+....
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l----~~aDIVIitag 77 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDC----KDADIVVITAG 77 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHh----CCCCEEEEccC
Confidence 678899986 4444444433222248999999887654433332211100002233333333322 34799987665
Q ss_pred cc
Q 027517 116 LR 117 (222)
Q Consensus 116 l~ 117 (222)
..
T Consensus 78 ~~ 79 (306)
T cd05291 78 AP 79 (306)
T ss_pred CC
Confidence 43
No 443
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=82.14 E-value=4.7 Score=28.06 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=45.2
Q ss_pred eEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEccc
Q 027517 37 NVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYG 115 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 115 (222)
+|-=||.|. ....+++++ ..+.++++.|.+++..+...+. .+. ...+..+.. +..|+|++.-.
T Consensus 3 ~Ig~IGlG~--mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----------g~~-~~~s~~e~~---~~~dvvi~~v~ 66 (163)
T PF03446_consen 3 KIGFIGLGN--MGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----------GAE-VADSPAEAA---EQADVVILCVP 66 (163)
T ss_dssp EEEEE--SH--HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----------TEE-EESSHHHHH---HHBSEEEE-SS
T ss_pred EEEEEchHH--HHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----------hhh-hhhhhhhHh---hcccceEeecc
Confidence 455567664 333333332 2367899999998777665543 222 222323321 23588887432
Q ss_pred ccCcccHHHHHHH--HhcccCCCcEEEE
Q 027517 116 LRNVVDKRKALEE--SFRVLKPGSRISV 141 (222)
Q Consensus 116 l~~~~~~~~~l~~--~~~~l~~gG~l~i 141 (222)
.-+....++.. +...|++|..++-
T Consensus 67 --~~~~v~~v~~~~~i~~~l~~g~iiid 92 (163)
T PF03446_consen 67 --DDDAVEAVLFGENILAGLRPGKIIID 92 (163)
T ss_dssp --SHHHHHHHHHCTTHGGGS-TTEEEEE
T ss_pred --cchhhhhhhhhhHHhhccccceEEEe
Confidence 12234556666 7777777766643
No 444
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=82.09 E-value=23 Score=27.85 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=56.0
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-C-CCCCc
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-P-FSDCF 106 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~ 106 (222)
...++.+||=.|+|. |..+..+++..+ ..++++++.++...+.+++.-. . .-+.....+... + . .+...
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g~----~--~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKKLGA----T--HTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCC----C--ceeccccccHHHHHHHHhCCCC
Confidence 456677877777653 455566777642 1478889888776665554210 0 001111111100 0 0 12245
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+|+-.. .. ...+..+.+.|+++|+++...
T Consensus 236 ~d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 236 VDVVIEAV-----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CCEEEECC-----CC-HHHHHHHHHhccCCcEEEEec
Confidence 89888533 12 335677888999999987654
No 445
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.79 E-value=3.8 Score=32.56 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIG 64 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~ 64 (222)
++..++|+|||-|.++..++..++ ...++.
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~-~~~~~l 211 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQ-IQNVYL 211 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhc-cccEEE
Confidence 446899999999999999998874 345554
No 446
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=81.44 E-value=11 Score=30.35 Aligned_cols=111 Identities=23% Similarity=0.276 Sum_probs=66.0
Q ss_pred CCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEEEE-
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITM- 112 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~- 112 (222)
+.++||.+|+.+.....+++.++ ..+--|+++..+.+.....+..... ..-....+..+|....+. ....++.+..
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~r-v~kpGG~~i~~e~i~~~~~~~~~~~-~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~ 258 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYR-VLKPGGLFIVKEWIKTAKLKKPNSE-HVDILLEIEGGDALPAETFNTDVFDLLKSF 258 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhc-ccCCCceEEeHHHHHhhhccCCCcc-cccccCceeccccccceeccccHHHHHhhc
Confidence 45899999999999999998873 3566778888888777766543210 000233444444332210 0011111110
Q ss_pred ------------------------cccccCcccHHHHHHHHhcccCCCcEEEEEecCCC
Q 027517 113 ------------------------GYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKS 147 (222)
Q Consensus 113 ------------------------~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~ 147 (222)
.....|+++...++......++|+|.+++.+..+.
T Consensus 259 ~~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 259 GFEHLKLEKDLALKSSFPWNTPLTRDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred cchhhhhcccccCCCccccccccchhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 22334455556677888888899988888766543
No 447
>PRK06701 short chain dehydrogenase; Provisional
Probab=81.38 E-value=13 Score=28.54 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=55.1
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChh-HHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CC----
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKN-QLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FS---- 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 103 (222)
++++|-.|++. .....+++.+ ..+.+++.++.++. ..+.........+ .++.++..|+.+.. +.
T Consensus 46 ~k~iLItGasg-gIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 46 GKVALITGGDS-GIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG----VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46788888544 4444444333 23568888877642 2222222222111 36778888887632 00
Q ss_pred -CCceeEEEEcccccC----ccc----------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 104 -DCFFDAITMGYGLRN----VVD----------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 104 -~~~~D~v~~~~~l~~----~~~----------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+..|+++.+..... +.+ ...+++.+.+.++++|.++++.
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 135788886554321 110 1234555666666777776654
No 448
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=81.15 E-value=0.3 Score=34.30 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=32.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
++.+|+=+|.|. |.-+..++..+ +.+++.+|..+..++..+..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~ 62 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESL 62 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcc
Confidence 457999999997 66677888776 67999999998877766554
No 449
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=81.14 E-value=12 Score=27.74 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=42.2
Q ss_pred eEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEEE
Q 027517 37 NVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 111 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~ 111 (222)
+++=+|||. +...+++.+. .+..++.+|.+++..+.....- .....+++|..+.. ..-..+|+++
T Consensus 2 ~iiIiG~G~--vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~--------~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 2 KIIIIGAGR--VGRSVARELSEEGHNVVLIDRDEERVEEFLADE--------LDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred EEEEECCcH--HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh--------cceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 577788876 3333333332 2458999999998877733311 25678888887732 2235689888
Q ss_pred Ec
Q 027517 112 MG 113 (222)
Q Consensus 112 ~~ 113 (222)
+.
T Consensus 72 a~ 73 (225)
T COG0569 72 AA 73 (225)
T ss_pred Ee
Confidence 63
No 450
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=81.03 E-value=21 Score=28.03 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=55.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+.+|.-+|+|. |....+.+...+-..++..+|++++.++....-+....... .++.+...|..++ ...|+|+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~~~~i~~~~~~~~----~~adivIi 79 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-SPTKIYAGDYSDC----KDADLVVI 79 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-CCeEEEeCCHHHh----CCCCEEEE
Confidence 456999999987 66665555443222379999997765433222121111100 2344444444333 34688887
Q ss_pred cccccCccc--H-------HHHHHHHhccc---CCCcEEEEEe
Q 027517 113 GYGLRNVVD--K-------RKALEESFRVL---KPGSRISVLD 143 (222)
Q Consensus 113 ~~~l~~~~~--~-------~~~l~~~~~~l---~~gG~l~i~~ 143 (222)
......-+. + ..+++++...+ .|+|++++..
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 666533321 1 23344433333 3688876643
No 451
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=80.82 E-value=27 Score=27.86 Aligned_cols=98 Identities=13% Similarity=0.221 Sum_probs=59.1
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC----c-CC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----L-PF 102 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~-~~ 102 (222)
....++.+||-.|+|. |..+..+++.. +. .++++|.+++..+.+++.- --.++..+-.+ + ..
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~--G~~~v~~~~~~~~k~~~~~~~g---------~~~~i~~~~~~~~~~v~~~ 250 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIA--GCTTIIAVDIVDSRLELAKELG---------ATHVINPKEEDLVAAIREI 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcC---------CcEEecCCCcCHHHHHHHH
Confidence 3456778899888765 66677777775 44 5999999887776665431 11111111111 0 01
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
....+|+|+-+..- ...+....+.++++|+++....
T Consensus 251 ~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 251 TGGGVDYALDTTGV------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred hCCCCcEEEECCCC------cHHHHHHHHHhccCCEEEEeCc
Confidence 12458888854321 2356778888999999887543
No 452
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=80.75 E-value=15 Score=24.94 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=52.9
Q ss_pred eEEEecC-CC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 37 NVLDVCC-GS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~-G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+|.=+|+ |. |.....++...+-..++..+|..++..+--..-+.........+..+...+..++ ...|+|+...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~----~~aDivvita 77 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL----KDADIVVITA 77 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG----TTESEEEETT
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccc----ccccEEEEec
Confidence 6777888 65 6666555555344457999999976433322222221111112334444444443 3479999877
Q ss_pred cccCccc--H-----------HHHHHHHhcccCCCcEEEEE
Q 027517 115 GLRNVVD--K-----------RKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 115 ~l~~~~~--~-----------~~~l~~~~~~l~~gG~l~i~ 142 (222)
....-+. . ....+.+.+. .|+|.+++.
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivv 117 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVV 117 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEe
Confidence 6543321 1 2333444444 378887665
No 453
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=80.70 E-value=14 Score=28.70 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=48.6
Q ss_pred ecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcccccCc
Q 027517 41 VCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGYGLRNV 119 (222)
Q Consensus 41 iG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 119 (222)
||+|. |......+...+-..++..+|+.++..+-...-+.........++.+...|..++ ...|+|+.......-
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~----~daDivVitag~~rk 77 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC----KDADLVVITAGAPQK 77 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH----CCCCEEEECCCCCCC
Confidence 57776 6665555544333347999999775432222111111100112344443343333 236999887765433
Q ss_pred cc-------------HHHHHHHHhcccCCCcEEEEE
Q 027517 120 VD-------------KRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 120 ~~-------------~~~~l~~~~~~l~~gG~l~i~ 142 (222)
+. ...+...+.+ ..|+|++++.
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~-~~p~~~vivv 112 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVK-SGFDGIFLVA 112 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEe
Confidence 21 1234444444 3688887665
No 454
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.64 E-value=16 Score=28.14 Aligned_cols=96 Identities=19% Similarity=0.109 Sum_probs=52.7
Q ss_pred CeEEEecCCCChh--HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh----hhhc----------CCCeeEEeCCCCC
Q 027517 36 DNVLDVCCGSGDL--SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV----SKAC----------YKNIEWVEGDALD 99 (222)
Q Consensus 36 ~~vLdiG~G~G~~--~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~----~~~~----------~~~i~~~~~d~~~ 99 (222)
.+|.=||+|.-.. +..++. .+.+|+.+|.+++.++.+.++.... .... ..++.. ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL---AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH
Confidence 4788899986333 333332 3568999999999887765432211 0000 012222 223322
Q ss_pred cCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 100 LPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 100 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
. ...|+|+..-. ....-...+++.+...++|+..++
T Consensus 81 ~----~~aD~Vieavp-e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 L----ADCDLVIEAAT-EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred h----cCCCEEEEcCc-CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 34688876431 111123566788888888887654
No 455
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=80.55 E-value=14 Score=24.55 Aligned_cols=80 Identities=18% Similarity=0.117 Sum_probs=55.2
Q ss_pred CceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCchhhHHHHHHhhcccccccccCChhHHHHHhHHhH
Q 027517 105 CFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQPFTTAIQEWMIDNVVVPVASGYGLAEEYQYLKSSI 184 (222)
Q Consensus 105 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (222)
+..|+|++.+--. -.+....|-...+.|..+|.+.+..+-....
T Consensus 44 dvvD~vllWwR~~-DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~----------------------------------- 87 (127)
T PF11253_consen 44 DVVDVVLLWWRDD-DGDLVDALVDARTNLADDGVIWVLTPKAGRP----------------------------------- 87 (127)
T ss_pred ccccEEEEEEECC-cchHHHHHHHHHhhhcCCCEEEEEccCCCCC-----------------------------------
Confidence 4578888744311 1256777888889999999999886654331
Q ss_pred hhcCCHHHHHHHHHHcCCeEEEEeeecCCe-eeeEeee
Q 027517 185 REFLTGKDLEKLALEIGFSRAKHYELSGGL-MGNLVAT 221 (222)
Q Consensus 185 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~~~ 221 (222)
...++.++.+....+|+...+........ ...++.+
T Consensus 88 -g~V~~~~I~eaA~taGL~~t~~~~v~~dWsg~rLv~r 124 (127)
T PF11253_consen 88 -GHVEPSDIREAAPTAGLVQTKSCAVGDDWSGTRLVRR 124 (127)
T ss_pred -CCCCHHHHHHHHhhcCCeeeeeeccCCCccEEEeecc
Confidence 23577899999999999988877766533 3344444
No 456
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=80.47 E-value=2.1 Score=39.34 Aligned_cols=93 Identities=18% Similarity=0.148 Sum_probs=54.7
Q ss_pred CCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC-CCCceeEEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF-SDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~ 112 (222)
.+..+||+|.|.-.-.+.+. ++...|+.+|..|-.--..- .+ ..-.+++.|...... ....+|.+.|
T Consensus 822 ~~~~~lDLGTGPE~RiLsli---P~~~pvtmvD~RP~ae~m~~-------w~--t~T~y~~~DYl~~~~~~~~~~D~vta 889 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLI---PPDTPVTMVDTRPFAEPMNC-------WN--TQTQYIQADYLSDAWWNGTPFDAVTA 889 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS----TTSEEEEEESS--SSSCCC-------CS--TTEEEEES-TTSCCGGCC---SEEEE
T ss_pred CcceEEEccCCccceeeecc---CCCCceEEEecCCcccccch-------hh--hcceeeeeccccceeEecCCCCEEEE
Confidence 46799999999876655555 56779999998774321111 11 356889999877543 3457999999
Q ss_pred cccccCc-----ccHHHHHHHHhcccCCCcE
Q 027517 113 GYGLRNV-----VDKRKALEESFRVLKPGSR 138 (222)
Q Consensus 113 ~~~l~~~-----~~~~~~l~~~~~~l~~gG~ 138 (222)
.++|..- -+....++.+.+.+++.|.
T Consensus 890 ilSLGAAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 890 ILSLGAAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp CTCHHHHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred EeeehhhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 8887643 2456778888887777663
No 457
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.81 E-value=25 Score=27.60 Aligned_cols=97 Identities=26% Similarity=0.374 Sum_probs=54.0
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc--CCCCCcee
Q 027517 33 KTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL--PFSDCFFD 108 (222)
Q Consensus 33 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D 108 (222)
.++.+||-.|+|. |..+..+++.. +. .+++++-+++....+++.-. . .-+.....+...+ ..+.+.+|
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~----~--~~~~~~~~~~~~~~~~~~~~~vd 233 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAKKMGA----D--VVINPREEDVVEVKSVTDGTGVD 233 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCc----c--eeeCcccccHHHHHHHcCCCCCC
Confidence 4677787777654 66677777775 45 68888766665555443210 0 0001101111000 01234688
Q ss_pred EEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 109 AITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+++-+-. ....+..+.+.|+++|+++...
T Consensus 234 ~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 234 VVLEMSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEEECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 8886432 1345667788899999987654
No 458
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.27 E-value=7.4 Score=30.46 Aligned_cols=104 Identities=14% Similarity=0.220 Sum_probs=60.8
Q ss_pred HhhCCCCCCeEEEecCCCChhH-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEe-CCCCC-c----
Q 027517 28 SWSGAKTGDNVLDVCCGSGDLS-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVE-GDALD-L---- 100 (222)
Q Consensus 28 ~~~~~~~~~~vLdiG~G~G~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~-~---- 100 (222)
...+..|++++.-+|.|.=.++ ..-++.. ...+++++|++++-.+.+++.- ..++++ .|..+ .
T Consensus 186 ~~Akv~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~fG---------aTe~iNp~d~~~~i~evi 255 (375)
T KOG0022|consen 186 NTAKVEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKEFG---------ATEFINPKDLKKPIQEVI 255 (375)
T ss_pred hhcccCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHhcC---------cceecChhhccccHHHHH
Confidence 4456678999999999985554 4445553 3348999999999999988762 222222 13333 0
Q ss_pred -CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCC-cEEEEEecCCC
Q 027517 101 -PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPG-SRISVLDFNKS 147 (222)
Q Consensus 101 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~g-G~l~i~~~~~~ 147 (222)
...+.-+|.-+=. +.. ...+++.....+.| |.-+++-....
T Consensus 256 ~EmTdgGvDysfEc--~G~----~~~m~~al~s~h~GwG~sv~iGv~~~ 298 (375)
T KOG0022|consen 256 IEMTDGGVDYSFEC--IGN----VSTMRAALESCHKGWGKSVVIGVAAA 298 (375)
T ss_pred HHHhcCCceEEEEe--cCC----HHHHHHHHHHhhcCCCeEEEEEecCC
Confidence 1123445655411 111 34555555666777 77666554443
No 459
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=79.18 E-value=33 Score=28.41 Aligned_cols=108 Identities=11% Similarity=-0.087 Sum_probs=56.6
Q ss_pred CCCCCeEEEecC-CC-ChhHHHHHHHh---C---C-CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 32 AKTGDNVLDVCC-GS-GDLSFLLSEQV---G---S-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 32 ~~~~~~vLdiG~-G~-G~~~~~l~~~~---~---~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
.++..+|.-+|+ |. |......+..- + + ..++..+|.+++.++--..-+.........++.+...|..++
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~-- 174 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF-- 174 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh--
Confidence 345679999999 87 55544443321 0 1 127889998887654433222211101112344344444443
Q ss_pred CCCceeEEEEcccccCccc-------------HHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVVD-------------KRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~-------------~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
...|+|+.......-+. .......+.+...|+|+++++.
T Consensus 175 --kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 175 --QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred --CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 23699988776543332 1233444444456788877653
No 460
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.05 E-value=20 Score=27.76 Aligned_cols=76 Identities=17% Similarity=0.136 Sum_probs=51.3
Q ss_pred CCCeEEEecCCCC---hhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC---------
Q 027517 34 TGDNVLDVCCGSG---DLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP--------- 101 (222)
Q Consensus 34 ~~~~vLdiG~G~G---~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 101 (222)
.+..||-=|+|.| ..+..++++ +.++...|++++..+...+...+.+ ++.....|+.+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g-----~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG-----EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC-----ceeEEEecCCCHHHHHHHHHHH
Confidence 4668888887776 234555554 4578899999988777766664432 5777888887631
Q ss_pred -CCCCceeEEEEccccc
Q 027517 102 -FSDCFFDAITMGYGLR 117 (222)
Q Consensus 102 -~~~~~~D~v~~~~~l~ 117 (222)
..-+..|+++.+..+-
T Consensus 109 k~e~G~V~ILVNNAGI~ 125 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIV 125 (300)
T ss_pred HHhcCCceEEEeccccc
Confidence 2235689988766644
No 461
>PLN00203 glutamyl-tRNA reductase
Probab=78.97 E-value=23 Score=29.99 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=50.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCC-CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQ-GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.+.+|+=+|+|. |......+.. .+ .+++.++.+++..+....... + ..+.+. +..+....-...|+|+
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~--~G~~~V~V~nRs~era~~La~~~~--g----~~i~~~--~~~dl~~al~~aDVVI 334 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVS--KGCTKMVVVNRSEERVAALREEFP--D----VEIIYK--PLDEMLACAAEADVVF 334 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHhC--C----CceEee--cHhhHHHHHhcCCEEE
Confidence 367899999975 3333332222 23 369999988766555443321 0 112222 2222211123579988
Q ss_pred EcccccCcccHHHHHHHHhcccCC-CcEEEEEecCCCC
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKP-GSRISVLDFNKST 148 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~-gG~l~i~~~~~~~ 148 (222)
+.-.-.+.--....++.+...-+. +..++++|..-|.
T Consensus 335 sAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 335 TSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred EccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 754322221123344444322111 2336777776554
No 462
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.87 E-value=33 Score=28.25 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=53.1
Q ss_pred eEEEecCCCChhHHHHHHHhC-CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----CCCCceeEEE
Q 027517 37 NVLDVCCGSGDLSFLLSEQVG-SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----FSDCFFDAIT 111 (222)
Q Consensus 37 ~vLdiG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~v~ 111 (222)
+|+=+|+ |.....+++.+. .+.+++.+|.+++.++..++. ..+.++.+|..+.. ..-+.+|.|+
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---------~~~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---------LDVRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cCEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 5677777 556666665443 356899999999887776543 25677788876531 1234678887
Q ss_pred EcccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 112 MGYGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 112 ~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
+...- .+....+....+.+.|.-.+++
T Consensus 71 ~~~~~---~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 71 AVTDS---DETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EecCC---hHHHHHHHHHHHHhcCCCeEEE
Confidence 75421 1223333344444544444444
No 463
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=78.78 E-value=28 Score=28.01 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=57.2
Q ss_pred CCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCe-eEEeC---CCCC-c-C-
Q 027517 31 GAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNI-EWVEG---DALD-L-P- 101 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~---d~~~-~-~- 101 (222)
+..++.+||=.|+|. |..+..+++.. +. .+++++.+++..+.+++.-. ..+ ..... +..+ + .
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~--G~~~vi~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~~~~v~~~ 270 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAA--GASKVIAFEISEERRNLAKEMGA-------DYVFNPTKMRDCLSGEKVMEV 270 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCC-------CEEEcccccccccHHHHHHHh
Confidence 556778888888764 55556677764 45 68999988876655554311 011 11100 1100 0 1
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.+.+.+|+|+.... .....+....+.|+++|+++...
T Consensus 271 ~~g~gvDvvld~~g-----~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 271 TKGWGADIQVEAAG-----APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred cCCCCCCEEEECCC-----CcHHHHHHHHHHHHcCCEEEEEC
Confidence 12345898886422 22345677788889999988654
No 464
>PRK06223 malate dehydrogenase; Reviewed
Probab=78.49 E-value=29 Score=26.96 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=25.8
Q ss_pred CeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHH
Q 027517 36 DNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLS 73 (222)
Q Consensus 36 ~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~ 73 (222)
.+|.-+|+|. |......+...+.. ++..+|++++..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~ 40 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ 40 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH
Confidence 4788999988 66655555442223 8999999887653
No 465
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=78.39 E-value=28 Score=27.16 Aligned_cols=99 Identities=13% Similarity=0.007 Sum_probs=48.3
Q ss_pred CCeEEEecCCC-Chh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 35 GDNVLDVCCGS-GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
..+|+-+|+|. |.. +..|++. +.+|+.+.-++ .+..++.-..... ...+..+........+...+.+|+|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~---g~~V~~~~r~~--~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA---GFDVHFLLRSD--YEAVRENGLQVDS-VHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeCC--HHHHHhCCeEEEe-CCCCeeecCceEEcchhhcCCCCEEEE
Confidence 45899999986 444 3444432 45777777654 2222221100000 001111111111111111246899887
Q ss_pred cccccCcccHHHHHHHHhcccCCCcEEEEE
Q 027517 113 GYGLRNVVDKRKALEESFRVLKPGSRISVL 142 (222)
Q Consensus 113 ~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~ 142 (222)
.---+. ...+++.+...+++++.++..
T Consensus 79 avK~~~---~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 79 GLKTTA---NALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred EecCCC---hHhHHHHHhhhcCCCCEEEEe
Confidence 543332 345677788888888876543
No 466
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=78.31 E-value=32 Score=27.35 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=66.2
Q ss_pred HHHhhCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC----CCCCc
Q 027517 26 AVSWSGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG----DALDL 100 (222)
Q Consensus 26 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----d~~~~ 100 (222)
+....+.+++.+|.-+|||. |-....-++.. ...+++++|++++-++.|++.- ...++.. |+.+.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~fG---------AT~~vn~~~~~~vv~~ 246 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKFG---------ATHFVNPKEVDDVVEA 246 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhcC---------CceeecchhhhhHHHH
Confidence 34555678899999999997 55555555554 3348999999999999998763 2233322 11110
Q ss_pred --CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecCCCCCc
Q 027517 101 --PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150 (222)
Q Consensus 101 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~ 150 (222)
...+.-.|.++- ..-+ ...++.....+.++|..+++-...+...
T Consensus 247 i~~~T~gG~d~~~e-----~~G~-~~~~~~al~~~~~~G~~v~iGv~~~~~~ 292 (366)
T COG1062 247 IVELTDGGADYAFE-----CVGN-VEVMRQALEATHRGGTSVIIGVAGAGQE 292 (366)
T ss_pred HHHhcCCCCCEEEE-----ccCC-HHHHHHHHHHHhcCCeEEEEecCCCCce
Confidence 111223455532 1111 3366667777777999888766654443
No 467
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=78.11 E-value=6.7 Score=30.29 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=56.9
Q ss_pred EEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC--CCCceeEEEEcccccCccc--HHHHHHHHhcccCCCcE
Q 027517 63 IGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF--SDCFFDAITMGYGLRNVVD--KRKALEESFRVLKPGSR 138 (222)
Q Consensus 63 ~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~l~~gG~ 138 (222)
.-....+...+.++++. .+|.+..+|+.++-. +.+..|.++...+-.++++ ...++.++.+-+.+|..
T Consensus 290 lP~yl~~~~YEsir~n~--------~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~ 361 (414)
T COG5379 290 LPAYLDEGVYESIRQNL--------RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGAR 361 (414)
T ss_pred CChhhchhhHHHHHhhh--------hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcE
Confidence 33455667777777766 478888899877432 4567999999888888865 57899999999999999
Q ss_pred EEEEec
Q 027517 139 ISVLDF 144 (222)
Q Consensus 139 l~i~~~ 144 (222)
+++-..
T Consensus 362 VifRta 367 (414)
T COG5379 362 VIFRTA 367 (414)
T ss_pred EEEecc
Confidence 988543
No 468
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=77.87 E-value=31 Score=26.86 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=51.6
Q ss_pred CCeEEEe--cCC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCc-----C-CCCC
Q 027517 35 GDNVLDV--CCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDL-----P-FSDC 105 (222)
Q Consensus 35 ~~~vLdi--G~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~ 105 (222)
+..++=+ |+| .|..+..+++.. +.++++++.+++..+.+++.- .-.++..+-.++ . .+.+
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~~g---------~~~~i~~~~~~~~~~v~~~~~~~ 211 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKKIG---------AEYVLNSSDPDFLEDLKELIAKL 211 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcC---------CcEEEECCCccHHHHHHHHhCCC
Confidence 3344433 444 366677777775 568999998888777776531 112222111111 0 1223
Q ss_pred ceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 106 FFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 106 ~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
.+|+++-... . .......+.++++|+++....
T Consensus 212 ~~d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 212 NATIFFDAVG-----G--GLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred CCcEEEECCC-----c--HHHHHHHHhhCCCCEEEEEEe
Confidence 5888885332 1 123445677899999877654
No 469
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=77.82 E-value=33 Score=27.24 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=58.6
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC----c-C-
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD----L-P- 101 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----~-~- 101 (222)
....++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++.- -..++...-.+ + .
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~--G~~~Vi~~~~~~~~~~~~~~~g---------~~~vv~~~~~~~~~~l~~~ 246 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIA--GASRIIAVDPVPEKLELARRFG---------ATHTVNASEDDAVEAVRDL 246 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHHhC---------CeEEeCCCCccHHHHHHHH
Confidence 3456778888888753 66667777774 454 889888887766654321 01111111111 1 1
Q ss_pred CCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEecC
Q 027517 102 FSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 102 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~ 145 (222)
.+.+.+|+++....- ...+....+.|+++|+++.....
T Consensus 247 ~~~~~vd~vld~~~~------~~~~~~~~~~l~~~G~~v~~g~~ 284 (363)
T cd08279 247 TDGRGADYAFEAVGR------AATIRQALAMTRKGGTAVVVGMG 284 (363)
T ss_pred cCCCCCCEEEEcCCC------hHHHHHHHHHhhcCCeEEEEecC
Confidence 123458988753321 24567788889999998776443
No 470
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=77.77 E-value=4.3 Score=30.56 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhhCCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHh
Q 027517 19 HRIWKRMAVSWSGAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMAS 76 (222)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 76 (222)
-+.+..++.+.++..+..+++|+=||+|..+..+... ..+++.-|+++..+...+
T Consensus 5 K~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 5 KRKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWK 59 (260)
T ss_dssp SGGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHH
Confidence 3445567777776546779999999999999887642 458999999998776666
No 471
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=77.67 E-value=11 Score=33.54 Aligned_cols=100 Identities=14% Similarity=0.011 Sum_probs=60.5
Q ss_pred CeEEEecCCCChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhh--------------cCCCeeEEeCCCCCc
Q 027517 36 DNVLDVCCGSGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKA--------------CYKNIEWVEGDALDL 100 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~d~~~~ 100 (222)
.+|-=||+|+-.... ..... .+.+|+.+|.+++.++.+.++....-.. ...++... .|...+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD--KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh--CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh
Confidence 478999999743332 22222 4779999999999999877665432100 00122221 222211
Q ss_pred CCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 101 PFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 101 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
...|+|+=. +.+.++-...+++++-+.++|+.+|.-.+
T Consensus 413 ----~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNT 450 (737)
T TIGR02441 413 ----KNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNT 450 (737)
T ss_pred ----ccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 235666632 34445556789999999999998876443
No 472
>PTZ00117 malate dehydrogenase; Provisional
Probab=77.54 E-value=30 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=27.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHH
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQL 72 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~ 72 (222)
+..+|.-+|+|. |.....++...+ -.++..+|++++..
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~-~~~l~L~Di~~~~~ 42 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKN-LGDVVLYDVIKGVP 42 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCC-CCeEEEEECCCccc
Confidence 355899999998 777666655532 25799999988654
No 473
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=77.25 E-value=7.1 Score=32.43 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=53.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEE
Q 027517 34 TGDNVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITM 112 (222)
Q Consensus 34 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 112 (222)
.+++|+=+|+|. |......++.+ +.+|+++|.++.....+... .+.+ .++.+. -...|+|++
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~----------G~~~--~~leel---l~~ADIVI~ 315 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME----------GYQV--VTLEDV---VETADIFVT 315 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc----------Ccee--ccHHHH---HhcCCEEEE
Confidence 578999999997 55555555554 56899998877543222211 1121 122222 134799987
Q ss_pred cccccCcccHHHHH-HHHhcccCCCcEEEEEecC
Q 027517 113 GYGLRNVVDKRKAL-EESFRVLKPGSRISVLDFN 145 (222)
Q Consensus 113 ~~~l~~~~~~~~~l-~~~~~~l~~gG~l~i~~~~ 145 (222)
...- ..++ .+....||||++++-+...
T Consensus 316 atGt------~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 316 ATGN------KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CCCc------ccccCHHHHhccCCCcEEEEcCCC
Confidence 5321 2233 3677788999998765443
No 474
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=76.84 E-value=20 Score=27.71 Aligned_cols=97 Identities=22% Similarity=0.104 Sum_probs=52.6
Q ss_pred CCeEEEecCCC-Chh-HHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh----hhh----------cCCCeeEEeCCCC
Q 027517 35 GDNVLDVCCGS-GDL-SFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV----SKA----------CYKNIEWVEGDAL 98 (222)
Q Consensus 35 ~~~vLdiG~G~-G~~-~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~----~~~----------~~~~i~~~~~d~~ 98 (222)
-.+|-=||+|. |.- +..++. .+.+|+++|.+++.++.++++.... ... ...++. ...+..
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAA---AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLE 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHH
Confidence 35788899986 333 333332 3568999999999887665543211 000 000111 122222
Q ss_pred CcCCCCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEE
Q 027517 99 DLPFSDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRIS 140 (222)
Q Consensus 99 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~ 140 (222)
.. ...|+|+..- .+.......++.++...++|+..++
T Consensus 80 ~~----~~aD~Vieav-~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 80 EL----RDADFIIEAI-VESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred Hh----CCCCEEEEcC-ccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 11 3358888743 2222234567788888888876553
No 475
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=76.61 E-value=7.7 Score=30.04 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=43.6
Q ss_pred CCCChhHHHHHHHhCCC--CcEEEEeCChhHHHHHhcchhhhhhhcCCCeeE----EeCCCCCcC-----CCCCceeEEE
Q 027517 43 CGSGDLSFLLSEQVGSQ--GKVIGLDFSKNQLSMASSRQDLVSKACYKNIEW----VEGDALDLP-----FSDCFFDAIT 111 (222)
Q Consensus 43 ~G~G~~~~~l~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~d~~~~~-----~~~~~~D~v~ 111 (222)
.|+|.....+++++-.. .+++.+|.++..+...++.+...... +++.+ +.+|+.+.. +....+|+|+
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~--~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPD--PKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC----TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccc--cCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 47788887777765222 37999999999888888776432211 34543 478887632 3445789999
Q ss_pred EcccccCcc
Q 027517 112 MGYGLRNVV 120 (222)
Q Consensus 112 ~~~~l~~~~ 120 (222)
-..++-|++
T Consensus 83 HaAA~KhVp 91 (293)
T PF02719_consen 83 HAAALKHVP 91 (293)
T ss_dssp E------HH
T ss_pred EChhcCCCC
Confidence 999988884
No 476
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=76.51 E-value=2.3 Score=32.83 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=26.6
Q ss_pred cccHHHHHHHHhcccCCCcEEEEEecCCCCCc
Q 027517 119 VVDKRKALEESFRVLKPGSRISVLDFNKSTQP 150 (222)
Q Consensus 119 ~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~~ 150 (222)
+...+.+|....++|+|||+|+++.++.-+..
T Consensus 220 L~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDR 251 (314)
T COG0275 220 LEELEEALEAALDLLKPGGRLAVISFHSLEDR 251 (314)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEecchHHH
Confidence 34568899999999999999999999875543
No 477
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=76.48 E-value=11 Score=30.55 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=26.0
Q ss_pred eEEEecCCC-ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 37 NVLDVCCGS-GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 37 ~vLdiG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
+|-=+|.|. |.-+..+.. .+.+|+++|++++.++..++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred EEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcC
Confidence 355567774 333333332 256899999999999888764
No 478
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=76.30 E-value=34 Score=26.52 Aligned_cols=85 Identities=8% Similarity=-0.030 Sum_probs=40.5
Q ss_pred CCCeEEEecCCCChhHHHH-HHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCC-CCCcCCCCCceeEEE
Q 027517 34 TGDNVLDVCCGSGDLSFLL-SEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGD-ALDLPFSDCFFDAIT 111 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~D~v~ 111 (222)
.++++|=+|||.-.-+... +... .-.+++.++-+++..+.+++............+.+...+ ...+......+|+|+
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~-g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivI 201 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT 201 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEE
Confidence 4568999999765433222 2221 224799999876534444443322211000112222211 000111124589999
Q ss_pred EcccccCc
Q 027517 112 MGYGLRNV 119 (222)
Q Consensus 112 ~~~~l~~~ 119 (222)
..-++...
T Consensus 202 NaTp~Gm~ 209 (288)
T PRK12749 202 NGTKVGMK 209 (288)
T ss_pred ECCCCCCC
Confidence 77666543
No 479
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.27 E-value=11 Score=27.22 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=45.1
Q ss_pred CCCCCCeEEEecCC-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeE
Q 027517 31 GAKTGDNVLDVCCG-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDA 109 (222)
Q Consensus 31 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (222)
....++++|-+|+= +|.++..++ ....+|+.+|+.|.+-.... +++.|... ..++.+.+|+
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~L---s~~~~vtv~Di~p~~r~~lp-----------~~v~Fr~~----~~~~~G~~Dl 102 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQML---SKADKVTVVDIHPFMRGFLP-----------NNVKFRNL----LKFIRGEVDL 102 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHh---cccceEEEecCCHHHHhcCC-----------CCccHhhh----cCCCCCceeE
Confidence 34567799999964 566666555 33569999999886543221 34555433 3344567888
Q ss_pred EEEcccccCc
Q 027517 110 ITMGYGLRNV 119 (222)
Q Consensus 110 v~~~~~l~~~ 119 (222)
|+-.-.+.-.
T Consensus 103 ivDlTGlGG~ 112 (254)
T COG4017 103 IVDLTGLGGI 112 (254)
T ss_pred EEeccccCCC
Confidence 8866555544
No 480
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=76.17 E-value=38 Score=27.01 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=57.9
Q ss_pred hCCCCCCeEEEecCCC-ChhHHHHHHHhCCCC-cEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeC--CCCC-c-CCC
Q 027517 30 SGAKTGDNVLDVCCGS-GDLSFLLSEQVGSQG-KVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEG--DALD-L-PFS 103 (222)
Q Consensus 30 ~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--d~~~-~-~~~ 103 (222)
....++.+||=.|+|. |..+..+++.. +. .+++++.+++..+.+++.-. . .-+..... +... + ...
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~--G~~~v~~~~~~~~~~~~~~~~g~-~-----~~v~~~~~~~~~~~~l~~~~ 250 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAA--GASRIIAVDINKDKFEKAKQLGA-T-----ECINPRDQDKPIVEVLTEMT 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHhCC-C-----eecccccccchHHHHHHHHh
Confidence 3556788888888764 55566677764 44 48888888887777644311 0 01111111 1100 0 011
Q ss_pred CCceeEEEEcccccCcccHHHHHHHHhcccC-CCcEEEEEec
Q 027517 104 DCFFDAITMGYGLRNVVDKRKALEESFRVLK-PGSRISVLDF 144 (222)
Q Consensus 104 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~-~gG~l~i~~~ 144 (222)
.+.+|+|+-... . ...+....+.++ ++|+++....
T Consensus 251 ~~~~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 251 DGGVDYAFEVIG-----S-ADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred CCCCcEEEECCC-----C-HHHHHHHHHHhccCCCEEEEEec
Confidence 245888885321 1 345667788888 9999887644
No 481
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=76.05 E-value=13 Score=28.62 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=41.0
Q ss_pred CCCCCCeEEEecCCCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhh
Q 027517 31 GAKTGDNVLDVCCGSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLV 82 (222)
Q Consensus 31 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (222)
...++..|||.=+|+|......... +..++++|++++..+.+.++....
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHhh
Confidence 4567889999999999998776644 568999999999999999987643
No 482
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=76.04 E-value=36 Score=26.70 Aligned_cols=96 Identities=19% Similarity=0.226 Sum_probs=55.2
Q ss_pred hhCCCCCCeEEEecC-C-CChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC---c-CC
Q 027517 29 WSGAKTGDNVLDVCC-G-SGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD---L-PF 102 (222)
Q Consensus 29 ~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~---~-~~ 102 (222)
.....++.+||-.|+ | .|..+..+++.. +.++++++.++ ..+.+++. + -. .+...+-.. . ..
T Consensus 172 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~--g~~vi~~~~~~-~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~ 239 (350)
T cd08274 172 RAGVGAGETVLVTGASGGVGSALVQLAKRR--GAIVIAVAGAA-KEEAVRAL----G----AD-TVILRDAPLLADAKAL 239 (350)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEeCch-hhHHHHhc----C----Ce-EEEeCCCccHHHHHhh
Confidence 345667889999997 3 366677777775 56788877543 44444321 1 01 111111100 0 11
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
..+.+|+|+-... ...+....+.++++|.++...
T Consensus 240 ~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 240 GGEPVDVVADVVG-------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred CCCCCcEEEecCC-------HHHHHHHHHHhccCCEEEEec
Confidence 2345898886432 125677888999999987543
No 483
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=75.95 E-value=21 Score=30.36 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCCeEEEecCCCChhHHHHHHHhC--CCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----CCCCc
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQVG--SQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----FSDCF 106 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~ 106 (222)
.+++||-=| |+|.....+++++- .-.++..+|.++..+......+...-+ ..++.++.+|+.+.. +..-+
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~--~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP--ELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCC--CcceEEEecccccHHHHHHHHhcCC
Confidence 456777666 67777776666541 123899999999888777776654221 257888889998743 33456
Q ss_pred eeEEEEcccccCcc
Q 027517 107 FDAITMGYGLRNVV 120 (222)
Q Consensus 107 ~D~v~~~~~l~~~~ 120 (222)
.|+|+-..++-|+|
T Consensus 326 vd~VfHAAA~KHVP 339 (588)
T COG1086 326 VDIVFHAAALKHVP 339 (588)
T ss_pred CceEEEhhhhccCc
Confidence 89999988888886
No 484
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=75.70 E-value=37 Score=26.64 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=55.2
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHHHhCCCCc-EEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-C-CCCCc
Q 027517 32 AKTGDNVLDVCCGS-GDLSFLLSEQVGSQGK-VIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-P-FSDCF 106 (222)
Q Consensus 32 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~ 106 (222)
..++.+||-.|+|. |..+..+++.. +.+ +++++-++...+.+++.-.. .-+.....+..+ + . ...+.
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~~------~~v~~~~~~~~~~l~~~~~~~~ 230 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKKMGAT------YVVNPFKEDVVKEVADLTDGEG 230 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCCc------EEEcccccCHHHHHHHhcCCCC
Confidence 34677777777652 55666677764 455 88887777666655443100 001111111111 0 1 12345
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEec
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLDF 144 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~~ 144 (222)
+|+++-+..- ...+..+.+.|+++|+++....
T Consensus 231 ~d~vld~~g~------~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 231 VDVFLEMSGA------PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCEEEECCCC------HHHHHHHHHhhcCCCEEEEEcc
Confidence 8998864221 3456778888999999877644
No 485
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=75.32 E-value=20 Score=30.01 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=28.8
Q ss_pred CeEEEecCCCChhHHH--HHHHhCCCCcEEEEeCChhHHHHHhcc
Q 027517 36 DNVLDVCCGSGDLSFL--LSEQVGSQGKVIGLDFSKNQLSMASSR 78 (222)
Q Consensus 36 ~~vLdiG~G~G~~~~~--l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (222)
.+|.=+|+|-...... +++. +.+.+|+++|++++.++..++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~-g~g~~V~gvD~~~~~v~~l~~g 45 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALK-CPDIEVVVVDISVPRIDAWNSD 45 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHcC
Confidence 3577788887555433 3332 3356899999999998886654
No 486
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.82 E-value=19 Score=26.78 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=46.4
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C-----C
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 103 (222)
++++|-.|++. .....+++.+ ..+.+++.++-+++.++...+.....+ .++.++..|+.+.. + .
T Consensus 7 ~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 7 GKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG----GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56888888644 4443333332 235689999988776655544432222 46788888987631 0 0
Q ss_pred CCceeEEEEcccc
Q 027517 104 DCFFDAITMGYGL 116 (222)
Q Consensus 104 ~~~~D~v~~~~~l 116 (222)
.++.|+++.+...
T Consensus 82 ~g~id~li~~ag~ 94 (253)
T PRK06172 82 YGRLDYAFNNAGI 94 (253)
T ss_pred hCCCCEEEECCCC
Confidence 1357999876654
No 487
>PRK06182 short chain dehydrogenase; Validated
Probab=74.33 E-value=35 Score=25.76 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=44.1
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC-----C-----C
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP-----F-----S 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 103 (222)
+++++=.|+ +|.....+++.+ ..+.+|++++-+++.++.... .++.++..|+.+.. + .
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----------~~~~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----------LGVHPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----------CCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 457887775 445555555543 345689999887765543221 24677788887632 0 1
Q ss_pred CCceeEEEEccccc
Q 027517 104 DCFFDAITMGYGLR 117 (222)
Q Consensus 104 ~~~~D~v~~~~~l~ 117 (222)
.+..|+++.+....
T Consensus 72 ~~~id~li~~ag~~ 85 (273)
T PRK06182 72 EGRIDVLVNNAGYG 85 (273)
T ss_pred cCCCCEEEECCCcC
Confidence 13579999877654
No 488
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.05 E-value=38 Score=25.99 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=58.1
Q ss_pred CCCCCCeEEEecC--CCChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCC-c-CCCCCc
Q 027517 31 GAKTGDNVLDVCC--GSGDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALD-L-PFSDCF 106 (222)
Q Consensus 31 ~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~ 106 (222)
...++.+||=.|+ +.|..+..+++.. +.+++.+..+++..+.+++.- . ..+.....+... + .. .+.
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g----~---~~~~~~~~~~~~~i~~~-~~~ 208 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLKELG----A---DEVVIDDGAIAEQLRAA-PGG 208 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcC----C---cEEEecCccHHHHHHHh-CCC
Confidence 4567789998886 3577778888875 568998888887666664321 0 111100111110 0 12 346
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
+|+++-+.. ...+....+.++++|+++...
T Consensus 209 ~d~vl~~~~-------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 209 FDKVLELVG-------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred ceEEEECCC-------hHHHHHHHHHhccCCEEEEEc
Confidence 898885432 235677788999999987654
No 489
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=73.98 E-value=2.2 Score=33.21 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=24.5
Q ss_pred cHHHHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 121 DKRKALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 121 ~~~~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
.....|..+..+|+|||+++++.++.-+.
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 35788999999999999999999886543
No 490
>PRK06500 short chain dehydrogenase; Provisional
Probab=73.67 E-value=34 Score=25.26 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=42.1
Q ss_pred CCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------CC
Q 027517 35 GDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------FS 103 (222)
Q Consensus 35 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 103 (222)
++++|=.|++ |.....+++.+ ..+.++++++.+++.++...+.. + .++.++..|+.+.. ..
T Consensus 6 ~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 6 GKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAEL---G----ESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---C----CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4577777754 44444444433 23568999988766554433322 1 35667777776531 01
Q ss_pred CCceeEEEEcccc
Q 027517 104 DCFFDAITMGYGL 116 (222)
Q Consensus 104 ~~~~D~v~~~~~l 116 (222)
.++.|+++.+...
T Consensus 78 ~~~id~vi~~ag~ 90 (249)
T PRK06500 78 FGRLDAVFINAGV 90 (249)
T ss_pred hCCCCEEEECCCC
Confidence 1357988876554
No 491
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=73.65 E-value=21 Score=24.27 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=39.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhC-C-CCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVG-S-QGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~-~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
.++.+|+-+|+|. ....+++.+. . ..+++.+|.+++..+...+.... ..+.....|..+. -+..|+|
T Consensus 17 ~~~~~i~iiG~G~--~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~Dvv 85 (155)
T cd01065 17 LKGKKVLILGAGG--AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE------LGIAIAYLDLEEL---LAEADLI 85 (155)
T ss_pred CCCCEEEEECCcH--HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh------cccceeecchhhc---cccCCEE
Confidence 3467899999863 3333332221 1 24799999887766554333211 0011112222221 2458999
Q ss_pred EEcccccC
Q 027517 111 TMGYGLRN 118 (222)
Q Consensus 111 ~~~~~l~~ 118 (222)
++.-....
T Consensus 86 i~~~~~~~ 93 (155)
T cd01065 86 INTTPVGM 93 (155)
T ss_pred EeCcCCCC
Confidence 97665543
No 492
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=73.59 E-value=22 Score=26.51 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=46.9
Q ss_pred CCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcC----------C
Q 027517 34 TGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLP----------F 102 (222)
Q Consensus 34 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 102 (222)
.++++|-.|+ +|.....+++.+ ..+.+++.++-+++.++.....+...+ .++.++..|+.+.. .
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG----GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHHHHHHHH
Confidence 4668888885 444444444433 246689999988776655444332221 35778888887631 0
Q ss_pred CCCceeEEEEcccc
Q 027517 103 SDCFFDAITMGYGL 116 (222)
Q Consensus 103 ~~~~~D~v~~~~~l 116 (222)
.-++.|.++.+...
T Consensus 85 ~~~~id~vi~~ag~ 98 (256)
T PRK06124 85 EHGRLDILVNNVGA 98 (256)
T ss_pred hcCCCCEEEECCCC
Confidence 11357888876554
No 493
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=73.45 E-value=43 Score=27.46 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=49.5
Q ss_pred CCCCeEEEecCC-CChhHH-HHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEE
Q 027517 33 KTGDNVLDVCCG-SGDLSF-LLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAI 110 (222)
Q Consensus 33 ~~~~~vLdiG~G-~G~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v 110 (222)
-.+.+||=||+| .|.+.. +|... + -..++...-+. +.|++..... ...+. .+.+++.--..+|+|
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~-g-~~~i~IaNRT~---erA~~La~~~------~~~~~--~l~el~~~l~~~DvV 242 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEK-G-VKKITIANRTL---ERAEELAKKL------GAEAV--ALEELLEALAEADVV 242 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhC-C-CCEEEEEcCCH---HHHHHHHHHh------CCeee--cHHHHHHhhhhCCEE
Confidence 357799999999 576654 44433 1 23566665433 4444433222 12222 222322122458999
Q ss_pred EEccc-ccCcccHHHHHHHHhcccCCCcEEEEEecCCCCC
Q 027517 111 TMGYG-LRNVVDKRKALEESFRVLKPGSRISVLDFNKSTQ 149 (222)
Q Consensus 111 ~~~~~-l~~~~~~~~~l~~~~~~l~~gG~l~i~~~~~~~~ 149 (222)
++.-+ .+++-. ...+.+ .+++--.++++|+.-|..
T Consensus 243 issTsa~~~ii~-~~~ve~---a~~~r~~~livDiavPRd 278 (414)
T COG0373 243 ISSTSAPHPIIT-REMVER---ALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred EEecCCCccccC-HHHHHH---HHhcccCeEEEEecCCCC
Confidence 97544 333322 222222 222222277888776554
No 494
>PRK08507 prephenate dehydrogenase; Validated
Probab=73.21 E-value=18 Score=27.65 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=46.4
Q ss_pred eEEEecCCC--ChhHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEEEcc
Q 027517 37 NVLDVCCGS--GDLSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAITMGY 114 (222)
Q Consensus 37 ~vLdiG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 114 (222)
+|.-||+|. +.++..+.+. +...+++++|.+++..+.+.+.- .+.. ..+..+. . + .|+|+..-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-g~~~~v~~~d~~~~~~~~~~~~g---------~~~~-~~~~~~~--~-~-aD~Vilav 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-GLISKVYGYDHNELHLKKALELG---------LVDE-IVSFEEL--K-K-CDVIFLAI 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-CCCCEEEEEcCCHHHHHHHHHCC---------CCcc-cCCHHHH--h-c-CCEEEEeC
Confidence 567788876 2334444433 22237999999988776654321 1111 1122221 1 2 69988765
Q ss_pred cccCcccHHHHHHHHhcccCCCcEE
Q 027517 115 GLRNVVDKRKALEESFRVLKPGSRI 139 (222)
Q Consensus 115 ~l~~~~~~~~~l~~~~~~l~~gG~l 139 (222)
... .....+.++.. ++++..+
T Consensus 67 p~~---~~~~~~~~l~~-l~~~~iv 87 (275)
T PRK08507 67 PVD---AIIEILPKLLD-IKENTTI 87 (275)
T ss_pred cHH---HHHHHHHHHhc-cCCCCEE
Confidence 433 23556777777 7777544
No 495
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=73.11 E-value=41 Score=25.97 Aligned_cols=96 Identities=15% Similarity=0.005 Sum_probs=48.0
Q ss_pred eEEEecCCCChh-H-HHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCC-CCcCCCCCceeEEEEc
Q 027517 37 NVLDVCCGSGDL-S-FLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDA-LDLPFSDCFFDAITMG 113 (222)
Q Consensus 37 ~vLdiG~G~G~~-~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 113 (222)
+|+-+|+|.-.. . ..+++ .+.+|+.++. ++.++..++.-...... ..... ..... .+.....+.+|+|+..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~---~g~~V~~~~r-~~~~~~~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE---AGRDVTFLVR-PKRAKALRERGLVIRSD-HGDAV-VPGPVITDPEELTGPFDLVILA 75 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH---CCCceEEEec-HHHHHHHHhCCeEEEeC-CCeEE-ecceeecCHHHccCCCCEEEEE
Confidence 578889887333 3 33343 2568999987 66555544321000000 00111 11111 1111112468988865
Q ss_pred ccccCcccHHHHHHHHhcccCCCcEEEE
Q 027517 114 YGLRNVVDKRKALEESFRVLKPGSRISV 141 (222)
Q Consensus 114 ~~l~~~~~~~~~l~~~~~~l~~gG~l~i 141 (222)
-.-. ....+++.+...+.++..++.
T Consensus 76 vk~~---~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 76 VKAY---QLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred eccc---CHHHHHHHHHhhcCCCCEEEE
Confidence 4322 346677888888877765543
No 496
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=72.94 E-value=4.5 Score=33.37 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=52.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHHhCCCCcEE------EEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCc
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQVGSQGKVI------GLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCF 106 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~~------~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (222)
-.+++|+-||||+=..+..+--+ ..+..++ ++|..+...+.|.+. .. ...+..+. -+.
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLr-dSGvnVvvglr~~~id~~~~s~~kA~~d----------GF--~v~~~~Ea---~~~ 97 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMR-DSGLDISYALRKEAIAEKRASWRKATEN----------GF--KVGTYEEL---IPQ 97 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCc-cccceeEEeccccccccccchHHHHHhc----------CC--ccCCHHHH---HHh
Confidence 35789999999984443222111 1233444 334334444443322 11 11222222 245
Q ss_pred eeEEEEcccccCcccHHHHHHHHhcccCCCcEEEEEe
Q 027517 107 FDAITMGYGLRNVVDKRKALEESFRVLKPGSRISVLD 143 (222)
Q Consensus 107 ~D~v~~~~~l~~~~~~~~~l~~~~~~l~~gG~l~i~~ 143 (222)
.|+|++..... ....+.+++...||||..|.+..
T Consensus 98 ADvVviLlPDt---~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 98 ADLVINLTPDK---QHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred CCEEEEcCChH---HHHHHHHHHHhhCCCCCEEEecC
Confidence 79999866554 25666799999999999998853
No 497
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=72.86 E-value=3.6 Score=25.57 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=18.0
Q ss_pred EEEecCCCChhHHHHHHHhCCCCcEEEEe
Q 027517 38 VLDVCCGSGDLSFLLSEQVGSQGKVIGLD 66 (222)
Q Consensus 38 vLdiG~G~G~~~~~l~~~~~~~~~~~~~D 66 (222)
=+|||||.|.......+.......++-+.
T Consensus 6 NIDIGcG~GNTmda~fRsct~htSyYy~S 34 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSCTLHTSYYYLS 34 (124)
T ss_pred ccccccCCCcchhhhhhccccccceEEEe
Confidence 47999999988765554432333444443
No 498
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=72.63 E-value=40 Score=25.69 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=47.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHHh-CCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCCCCCceeEEE
Q 027517 33 KTGDNVLDVCCGSGDLSFLLSEQV-GSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPFSDCFFDAIT 111 (222)
Q Consensus 33 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~ 111 (222)
.++++++=+|+|. ....++..+ ..+.+++.++.+++..+...+..... ..+.... ..+.. ...+|+|+
T Consensus 115 ~~~k~vliiGaGg--~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~-----~~~~~~~--~~~~~--~~~~DivI 183 (270)
T TIGR00507 115 RPNQRVLIIGAGG--AARAVALPLLKADCNVIIANRTVSKAEELAERFQRY-----GEIQAFS--MDELP--LHRVDLII 183 (270)
T ss_pred ccCCEEEEEcCcH--HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc-----CceEEec--hhhhc--ccCccEEE
Confidence 3467899999872 333332222 23458888888765544333332111 1122221 11111 23589999
Q ss_pred EcccccCcccHHH-HHHHHhcccCCCcEEEEEecCC
Q 027517 112 MGYGLRNVVDKRK-ALEESFRVLKPGSRISVLDFNK 146 (222)
Q Consensus 112 ~~~~l~~~~~~~~-~l~~~~~~l~~gG~l~i~~~~~ 146 (222)
..-.....++... .+ ....++++..++=..+.+
T Consensus 184 natp~gm~~~~~~~~~--~~~~l~~~~~v~D~~y~p 217 (270)
T TIGR00507 184 NATSAGMSGNIDEPPV--PAEKLKEGMVVYDMVYNP 217 (270)
T ss_pred ECCCCCCCCCCCCCCC--CHHHcCCCCEEEEeccCC
Confidence 8776653322110 11 123467766544343333
No 499
>PRK10556 hypothetical protein; Provisional
Probab=72.62 E-value=6.4 Score=24.59 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHcCCeEEEEeeecCC
Q 027517 188 LTGKDLEKLALEIGFSRAKHYELSGG 213 (222)
Q Consensus 188 ~~~~~~~~~l~~~Gf~~~~~~~~~~~ 213 (222)
+.++|+.+.|+.+||+...+.....|
T Consensus 3 LRPDEVArVLe~aGF~~D~vt~~aYG 28 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDVVTQKAYG 28 (111)
T ss_pred cChHHHHHHHHhcCceEEEeechhcc
Confidence 56899999999999998877766544
No 500
>PLN02256 arogenate dehydrogenase
Probab=72.55 E-value=33 Score=26.80 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=48.8
Q ss_pred HHHHhhCCCCCCeEEEecCCC-Ch-hHHHHHHHhCCCCcEEEEeCChhHHHHHhcchhhhhhhcCCCeeEEeCCCCCcCC
Q 027517 25 MAVSWSGAKTGDNVLDVCCGS-GD-LSFLLSEQVGSQGKVIGLDFSKNQLSMASSRQDLVSKACYKNIEWVEGDALDLPF 102 (222)
Q Consensus 25 ~~~~~~~~~~~~~vLdiG~G~-G~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 102 (222)
.+.+........+|.=||+|. |. ++..+. . .+.+++++|.++. .+.+... .+.. ..|..+..
T Consensus 26 ~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~-~--~G~~V~~~d~~~~-~~~a~~~----------gv~~-~~~~~e~~- 89 (304)
T PLN02256 26 RLQEELEKSRKLKIGIVGFGNFGQFLAKTFV-K--QGHTVLATSRSDY-SDIAAEL----------GVSF-FRDPDDFC- 89 (304)
T ss_pred HHhHhhccCCCCEEEEEeeCHHHHHHHHHHH-h--CCCEEEEEECccH-HHHHHHc----------CCee-eCCHHHHh-
Confidence 344445445667899999875 33 333333 2 2458999998763 2222211 2222 12222211
Q ss_pred CCCceeEEEEcccccCcccHHHHHHHH-hcccCCCcE
Q 027517 103 SDCFFDAITMGYGLRNVVDKRKALEES-FRVLKPGSR 138 (222)
Q Consensus 103 ~~~~~D~v~~~~~l~~~~~~~~~l~~~-~~~l~~gG~ 138 (222)
....|+|+..-... ....+++++ ...++++..
T Consensus 90 -~~~aDvVilavp~~---~~~~vl~~l~~~~l~~~~i 122 (304)
T PLN02256 90 -EEHPDVVLLCTSIL---STEAVLRSLPLQRLKRSTL 122 (304)
T ss_pred -hCCCCEEEEecCHH---HHHHHHHhhhhhccCCCCE
Confidence 12368888755432 335566666 455677653
Done!