Your job contains 1 sequence.
>027519
MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKF
SQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIVFPGR
FIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKY
KKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDSLKSVQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027519
(222 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2014711 - symbol:RPL21C "chloroplast ribosomal... 428 3.3e-40 1
TAIR|locus:2126699 - symbol:NFD1 "NUCLEAR FUSION DEFECTIV... 220 3.6e-18 1
DICTYBASE|DDB_G0288799 - symbol:mrpl21 "ribosomal protein... 176 1.6e-13 1
TIGR_CMR|GSU_3236 - symbol:GSU_3236 "ribosomal protein L2... 140 1.1e-09 1
TIGR_CMR|BA_4676 - symbol:BA_4676 "ribosomal protein L21"... 121 1.1e-07 1
WB|WBGene00023422 - symbol:mrpl-21 species:6239 "Caenorha... 120 1.4e-07 1
TIGR_CMR|CBU_0385 - symbol:CBU_0385 "ribosomal protein L2... 116 3.8e-07 1
FB|FBgn0036853 - symbol:mRpL21 "mitochondrial ribosomal p... 116 4.9e-07 1
TIGR_CMR|CPS_4512 - symbol:CPS_4512 "ribosomal protein L2... 102 1.1e-05 1
TIGR_CMR|DET_1325 - symbol:DET_1325 "ribosomal protein L2... 100 1.9e-05 1
TIGR_CMR|SO_3652 - symbol:SO_3652 "ribosomal protein L21"... 99 2.4e-05 1
TIGR_CMR|SPO_1990 - symbol:SPO_1990 "ribosomal protein L2... 109 2.5e-05 1
UNIPROTKB|Q9KUT0 - symbol:rplU "50S ribosomal protein L21... 94 8.1e-05 1
TIGR_CMR|VC_0435 - symbol:VC_0435 "ribosomal protein L21"... 94 8.1e-05 1
TIGR_CMR|CHY_0367 - symbol:CHY_0367 "ribosomal protein L2... 92 0.00013 1
TIGR_CMR|ECH_0545 - symbol:ECH_0545 "ribosomal protein L2... 86 0.00068 1
UNIPROTKB|P0AG48 - symbol:rplU "50S ribosomal subunit pro... 85 0.00089 1
>TAIR|locus:2014711 [details] [associations]
symbol:RPL21C "chloroplast ribosomal protein L21"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP;RCA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009658 "chloroplast organization" evidence=IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0009793 "embryo development
ending in seed dormancy" evidence=IMP] [GO:0010027 "thylakoid
membrane organization" evidence=RCA;IMP] [GO:0006364 "rRNA
processing" evidence=RCA] [GO:0009902 "chloroplast relocation"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
[GO:0042742 "defense response to bacterium" evidence=RCA]
[GO:0042793 "transcription from plastid promoter" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0009570 GO:GO:0006412 GO:GO:0009409
GO:GO:0009941 GO:GO:0009658 GO:GO:0009793 GO:GO:0010027
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:AC007887 EMBL:Z49787
EMBL:Y15964 EMBL:AY058118 EMBL:AF428363 EMBL:AY116944
IPI:IPI00532845 PIR:S71282 RefSeq:NP_174808.1 UniGene:At.23722
ProteinModelPortal:P51412 SMR:P51412 STRING:P51412 PaxDb:P51412
PRIDE:P51412 EnsemblPlants:AT1G35680.1 GeneID:840472
KEGG:ath:AT1G35680 GeneFarm:195 TAIR:At1g35680 eggNOG:COG0261
HOGENOM:HOG000238965 InParanoid:P51412 KO:K02888 OMA:TNATVHA
PhylomeDB:P51412 ProtClustDB:CLSN2914377 Genevestigator:P51412
GermOnline:AT1G35680 PANTHER:PTHR21349 TIGRFAMs:TIGR00061
Uniprot:P51412
Length = 220
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 94/195 (48%), Positives = 115/195 (58%)
Query: 19 HCKISCQNPNPHPQLSLSKSKLCSFPSPKL-YTRPTFSFTHKFSQTXXXXXXXXXXXXXX 77
HC ++ + + SLSK L + P + P+ + T + + T
Sbjct: 17 HCNVNSRRSSTI-LCSLSKPSL-NLAKPLTGFLSPSTASTSRTAFTVAPKFAESVVEAEP 74
Query: 78 XXXXXXXXXXXXXXXXXKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKII 137
+E+ KREEIFAV+M+G RQYIVFPGR++YTQRLK ANV+D+I+
Sbjct: 75 ETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIV 134
Query: 138 LNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNT 197
LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGLN GHRQPNT
Sbjct: 135 LNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNT 194
Query: 198 RIRITGITGYQDYPA 212
RIRITGITGY++YPA
Sbjct: 195 RIRITGITGYEEYPA 209
>TAIR|locus:2126699 [details] [associations]
symbol:NFD1 "NUCLEAR FUSION DEFECTIVE 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000741 "karyogamy" evidence=RCA;IMP] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] InterPro:IPR001787 InterPro:IPR018258
Pfam:PF00829 PROSITE:PS01169 GO:GO:0005739 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0009555 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0009553 EMBL:AL022198 GO:GO:0019843
EMBL:AL161578 GO:GO:0000741 GO:GO:0009567 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 EMBL:AJ278909 EMBL:BT005870 EMBL:AY088563
IPI:IPI00547532 PIR:B85362 RefSeq:NP_567861.1 UniGene:At.23122
ProteinModelPortal:Q8L9A0 SMR:Q8L9A0 IntAct:Q8L9A0 STRING:Q8L9A0
PaxDb:Q8L9A0 PRIDE:Q8L9A0 EnsemblPlants:AT4G30930.1 GeneID:829217
KEGG:ath:AT4G30930 TAIR:At4g30930 eggNOG:NOG314874
InParanoid:Q8L9A0 OMA:ADMEVER PhylomeDB:Q8L9A0
ProtClustDB:CLSN2695801 Genevestigator:Q8L9A0 GermOnline:AT4G30930
Uniprot:Q8L9A0
Length = 270
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 46/108 (42%), Positives = 66/108 (61%)
Query: 101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNA 160
E +FA+V IGS Q+ V G I+T++LK ++NDK+ L KVLL+G+ + T IG+P++ +A
Sbjct: 138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197
Query: 161 AVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITGYQ 208
VHAVVEE L+ GHRQ T++RIT I G +
Sbjct: 198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245
>DICTYBASE|DDB_G0288799 [details] [associations]
symbol:mrpl21 "ribosomal protein L21, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001787 Pfam:PF00829
dictyBase:DDB_G0288799 GO:GO:0005739 GO:GO:0006412
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AAFI02000125 eggNOG:COG0261 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 RefSeq:XP_636527.1 ProteinModelPortal:Q54IF0
STRING:Q54IF0 EnsemblProtists:DDB0267021 GeneID:8626812
KEGG:ddi:DDB_G0288799 OMA:FAVVHIS Uniprot:Q54IF0
Length = 172
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 44/117 (37%), Positives = 60/117 (51%)
Query: 98 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVV 157
P ++ FAVV I +QY V G I T +++ +V + I+L+KVLLVGTK T IGKP++
Sbjct: 56 PIGKDSFAVVHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPII 114
Query: 158 TNAAVHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITGYQDYPAVT 214
+N VHA +EEQ G + T IRI GI Q+ T
Sbjct: 115 SNFKVHAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRIGGIIKGQETTTTT 171
>TIGR_CMR|GSU_3236 [details] [associations]
symbol:GSU_3236 "ribosomal protein L21" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261
KO:K02888 PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
OMA:KVTIIKF RefSeq:NP_954277.1 ProteinModelPortal:Q747M9
GeneID:2688294 KEGG:gsu:GSU3236 PATRIC:22029319
BioCyc:GSUL243231:GH27-3214-MONOMER Uniprot:Q747M9
Length = 102
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 35/102 (34%), Positives = 54/102 (52%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV+ G +QY V G F+ ++L+GA V D + L VL+VG +T IG P+V +A+V
Sbjct: 1 MYAVIRTGGKQYKVSEGDFLKVEKLEGA-VGDTVELKDVLMVGGETVA-IGTPLVPSASV 58
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
+ +QG + GHRQP T ++I I
Sbjct: 59 VGRIVDQGKDKKILVFKSKRRKNFRKMYGHRQPRTVLKIEKI 100
>TIGR_CMR|BA_4676 [details] [associations]
symbol:BA_4676 "ribosomal protein L21" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 ProtClustDB:PRK05573 RefSeq:NP_846890.1
RefSeq:YP_021324.1 RefSeq:YP_030589.1 ProteinModelPortal:Q81LE6
DNASU:1085870 EnsemblBacteria:EBBACT00000010321
EnsemblBacteria:EBBACT00000015606 EnsemblBacteria:EBBACT00000021517
GeneID:1085870 GeneID:2819827 GeneID:2850867 KEGG:ban:BA_4676
KEGG:bar:GBAA_4676 KEGG:bat:BAS4342 HOGENOM:HOG000036264
OMA:KVTIIKF BioCyc:BANT260799:GJAJ-4397-MONOMER
BioCyc:BANT261594:GJ7F-4545-MONOMER Uniprot:Q81LE6
Length = 102
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/102 (30%), Positives = 48/102 (47%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +Q V G+ IY ++L + + +KVL VG + +G PVV A V
Sbjct: 1 MYAIIETGGKQIKVEAGQAIYIEKLD-VEAGETVTFDKVLFVGGENVK-VGSPVVEGATV 58
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
A VE+QG GHRQP T++ + I
Sbjct: 59 TAKVEKQGRAKKIIVFKYKAKKNNRKKQGHRQPYTKLVVEAI 100
>WB|WBGene00023422 [details] [associations]
symbol:mrpl-21 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] InterPro:IPR001787 Pfam:PF00829
GO:GO:0040010 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:Z46937 PANTHER:PTHR21349 eggNOG:NOG314874
GeneTree:ENSGT00390000005535 RefSeq:NP_001022585.1
ProteinModelPortal:Q6A575 SMR:Q6A575 STRING:Q6A575 PaxDb:Q6A575
EnsemblMetazoa:F43C1.6.1 EnsemblMetazoa:F43C1.6.2 GeneID:3565999
KEGG:cel:CELE_F43C1.6 UCSC:F43C1.6.1 CTD:3565999 WormBase:F43C1.6
HOGENOM:HOG000209907 InParanoid:Q6A575 OMA:WPPNIGD NextBio:958679
Uniprot:Q6A575
Length = 171
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 97 EPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPV 156
E KR+ +FAVV + RQ+ V G I + NV D+I L KVL+VG + G+P+
Sbjct: 55 EEKRQRLFAVVYVNGRQWKVSDGDLINMEGNLPLNVGDEIKLEKVLMVGGTNFSLFGRPL 114
Query: 157 VTNAAVHA---VVEEQGLNP 173
+ +AV VVE++ NP
Sbjct: 115 LDASAVTVDAVVVEKKTTNP 134
>TIGR_CMR|CBU_0385 [details] [associations]
symbol:CBU_0385 "ribosomal protein L21" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_01363 InterPro:IPR001787
InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
OMA:KVTIIKF RefSeq:NP_819424.2 ProteinModelPortal:Q83EE0 SMR:Q83EE0
GeneID:1208268 KEGG:cbu:CBU_0385 PATRIC:17929467
BioCyc:CBUR227377:GJ7S-388-MONOMER Uniprot:Q83EE0
Length = 115
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/102 (29%), Positives = 48/102 (47%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +QY V G+ + ++L +V + + VL+V +IG P V +AAV
Sbjct: 1 MYAIIKTGGKQYRVTEGQMLKVEKL-AQDVGQSVKFDDVLMVAAGDELHIGTPSVKDAAV 59
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
A V +QG GHRQ T ++IT I
Sbjct: 60 TAEVVDQGRQAKIEIIKFKRRKHHMKRQGHRQDFTAVKITEI 101
>FB|FBgn0036853 [details] [associations]
symbol:mRpL21 "mitochondrial ribosomal protein L21"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_01363 InterPro:IPR001787 Pfam:PF00829 EMBL:AE014296
GO:GO:0006412 GO:GO:0003723 GO:GO:0005762 GO:GO:0003735
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 CTD:219927
GeneTree:ENSGT00390000005535 FlyBase:FBgn0036853 EMBL:BT128761
RefSeq:NP_649095.2 UniGene:Dm.5837 SMR:Q9VVX4 STRING:Q9VVX4
EnsemblMetazoa:FBtr0075022 EnsemblMetazoa:FBtr0333224 GeneID:40091
KEGG:dme:Dmel_CG9730 UCSC:CG9730-RA InParanoid:Q9VVX4 OMA:KDQQKEC
GenomeRNAi:40091 NextBio:816945 Uniprot:Q9VVX4
Length = 201
Score = 116 (45.9 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 96 EEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKP 155
++ ++ +FAVV + +Q+ V PG I + + D+I L+KVLL G + T +G+P
Sbjct: 71 QKSEQGRLFAVVHLCGKQFKVTPGDIILVEGYWPPTIGDEISLDKVLLAGARDFTLVGRP 130
Query: 156 VVTNAA--VHAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
++ V A V E+ L+ R P+T +RI I
Sbjct: 131 ILEPGLILVKATVVEKTLSHTKTHFRKKRRKQYMRINFQRSPHTMVRINSI 181
>TIGR_CMR|CPS_4512 [details] [associations]
symbol:CPS_4512 "ribosomal protein L21" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261
KO:K02888 PANTHER:PTHR21349 TIGRFAMs:TIGR00061 OMA:KVTIIKF
RefSeq:YP_271160.1 ProteinModelPortal:Q47VL2 SMR:Q47VL2
STRING:Q47VL2 PRIDE:Q47VL2 GeneID:3523251 KEGG:cps:CPS_4512
PATRIC:21471847 BioCyc:CPSY167879:GI48-4521-MONOMER Uniprot:Q47VL2
Length = 103
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/104 (26%), Positives = 44/104 (42%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV G +Q+ V G+ + ++L+ V + + VL++ +G P V V
Sbjct: 1 MYAVFQSGGKQHRVTEGQTVRLEKLE-LEVGATVEFDNVLMIANGDNINVGAPYVAGGKV 59
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITG 206
A V Q P GHRQ T ++ITGI G
Sbjct: 60 VAEVVTQARAPKITIVKFKRRKHSRKQAGHRQWFTEVKITGING 103
>TIGR_CMR|DET_1325 [details] [associations]
symbol:DET_1325 "ribosomal protein L21" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 Pfam:PF00829 PROSITE:PS01169
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019843 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 ProtClustDB:PRK05573
HOGENOM:HOG000036264 OMA:KVTIIKF RefSeq:YP_182036.1
ProteinModelPortal:Q3Z6W3 STRING:Q3Z6W3 GeneID:3229420
KEGG:det:DET1325 PATRIC:21609679
BioCyc:DETH243164:GJNF-1326-MONOMER Uniprot:Q3Z6W3
Length = 132
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 33/105 (31%), Positives = 43/105 (40%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
I+A++ G +QY V PG+ + A D I L+KVL++ T IG P V A V
Sbjct: 6 IYAIIESGGKQYKVTPGQLVEVDLFDLAE-GDSIELDKVLMLNDGETVTIGSPTVPGAKV 64
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI-TG 206
A V GHRQ T + I I TG
Sbjct: 65 TATVAGHIKGDKVFAYRFKAKSRNHKKTGHRQLYTVLTIGEILTG 109
>TIGR_CMR|SO_3652 [details] [associations]
symbol:SO_3652 "ribosomal protein L21" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 ProtClustDB:PRK05573 OMA:KVTIIKF
RefSeq:NP_719194.1 ProteinModelPortal:Q8EB80 SMR:Q8EB80
GeneID:1171311 KEGG:son:SO_3652 PATRIC:23526990 Uniprot:Q8EB80
Length = 103
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/102 (26%), Positives = 44/102 (43%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV G +Q+ V PG + ++L+ A + ++VLL+ ++G P+V V
Sbjct: 1 MYAVFQSGGKQHRVAPGHTVRLEKLEVAT-GSTVEFDQVLLIADGEKVHVGAPLVAGGKV 59
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
A V G GHRQ T ++IT I
Sbjct: 60 VAEVVSHGRGEKVTIVKFRRRKHHDKKLGHRQWFTEVKITAI 101
>TIGR_CMR|SPO_1990 [details] [associations]
symbol:SPO_1990 "ribosomal protein L21" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] HAMAP:MF_01363
InterPro:IPR001787 InterPro:IPR003583 Pfam:PF00829 PROSITE:PS01169
SMART:SM00278 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006412 GO:GO:0006281 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888
PANTHER:PTHR21349 TIGRFAMs:TIGR00061 RefSeq:YP_167225.1
ProteinModelPortal:Q5LRY0 GeneID:3193713 KEGG:sil:SPO1990
PATRIC:23377311 OMA:QDELNGG ProtClustDB:PRK12278 Uniprot:Q5LRY0
Length = 193
Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 32/103 (31%), Positives = 49/103 (47%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
+FAV+ G +QY V G + ++L A+ +K+ N VL++G +G P+V AAV
Sbjct: 1 MFAVLKTGGKQYKVQAGDVLRVEKL-AADAGEKVQFNDVLMLGGDAPV-VGAPLVDGAAV 58
Query: 163 HA-VVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
A V+++ GHRQ T +RIT I
Sbjct: 59 QAEVIDQIKGEKLIHFVKRRRKHSSQRTKGHRQKLTLVRITEI 101
>UNIPROTKB|Q9KUT0 [details] [associations]
symbol:rplU "50S ribosomal protein L21" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_01363 InterPro:IPR001787
InterPro:IPR018258 Pfam:PF00829 PROSITE:PS01169 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 ProtClustDB:PRK05573 OMA:KVTIIKF PIR:B82322
RefSeq:NP_230089.1 ProteinModelPortal:Q9KUT0 SMR:Q9KUT0
PRIDE:Q9KUT0 DNASU:2615696 GeneID:2615696 KEGG:vch:VC0435
PATRIC:20079949 Uniprot:Q9KUT0
Length = 103
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 28/102 (27%), Positives = 43/102 (42%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV G +Q+ V G+ + ++L + +KVLLV +G P+V V
Sbjct: 1 MYAVFQSGGKQHRVSEGQTLRLEKLD-VETGATVEFDKVLLVANGEDIKVGAPLVEGGKV 59
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
A V + G GHRQ T ++ITGI
Sbjct: 60 VAEVVQHGRGDKVKIVKFRRRKHSRKQQGHRQWFTEVKITGI 101
>TIGR_CMR|VC_0435 [details] [associations]
symbol:VC_0435 "ribosomal protein L21" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349 TIGRFAMs:TIGR00061
ProtClustDB:PRK05573 OMA:KVTIIKF PIR:B82322 RefSeq:NP_230089.1
ProteinModelPortal:Q9KUT0 SMR:Q9KUT0 PRIDE:Q9KUT0 DNASU:2615696
GeneID:2615696 KEGG:vch:VC0435 PATRIC:20079949 Uniprot:Q9KUT0
Length = 103
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 28/102 (27%), Positives = 43/102 (42%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV G +Q+ V G+ + ++L + +KVLLV +G P+V V
Sbjct: 1 MYAVFQSGGKQHRVSEGQTLRLEKLD-VETGATVEFDKVLLVANGEDIKVGAPLVEGGKV 59
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
A V + G GHRQ T ++ITGI
Sbjct: 60 VAEVVQHGRGDKVKIVKFRRRKHSRKQQGHRQWFTEVKITGI 101
>TIGR_CMR|CHY_0367 [details] [associations]
symbol:CHY_0367 "ribosomal protein L21" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258
Pfam:PF00829 PROSITE:PS01169 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 HOGENOM:HOG000036264 OMA:KVTIIKF
RefSeq:YP_359230.1 ProteinModelPortal:Q3AF54 STRING:Q3AF54
GeneID:3728444 KEGG:chy:CHY_0367 PATRIC:21273895
BioCyc:CHYD246194:GJCN-368-MONOMER Uniprot:Q3AF54
Length = 103
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 27/102 (26%), Positives = 42/102 (41%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++A++ G +QY V G I+ ++L A + +N+VL V + G P V A V
Sbjct: 1 MYAIIQTGGKQYKVAEGDKIFVEKLN-AEPGSIVTINEVLAVVKDGSIKAGNPYVEGAKV 59
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGI 204
+ V G GHRQP T + + I
Sbjct: 60 NLKVVRHGKGRKIIVFKYKPKKNYRRKYGHRQPFTEVIVEKI 101
>TIGR_CMR|ECH_0545 [details] [associations]
symbol:ECH_0545 "ribosomal protein L21" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 ProtClustDB:PRK05573 OMA:KVTIIKF
RefSeq:YP_507358.1 ProteinModelPortal:Q2GGS5 STRING:Q2GGS5
GeneID:3928066 KEGG:ech:ECH_0545 PATRIC:20576556
BioCyc:ECHA205920:GJNR-547-MONOMER Uniprot:Q2GGS5
Length = 102
Score = 86 (35.3 bits), Expect = 0.00068, P = 0.00068
Identities = 30/106 (28%), Positives = 46/106 (43%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
+FA+V G +QY V I ++L A+V +++ L+KV+ + + NA V
Sbjct: 1 MFAIVETGGKQYKVKEQDVIKIEKLN-ASVGEEVTLDKVIALADVNNNIV---FTHNAIV 56
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGITGYQ 208
A V EQ N GHRQ T +R+T I +
Sbjct: 57 TASVLEQCRNDKIIVFKKKRRKNYRRKNGHRQYMTVLRVTKINNME 102
>UNIPROTKB|P0AG48 [details] [associations]
symbol:rplU "50S ribosomal subunit protein L21"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_01363 InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
PROSITE:PS01169 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 EMBL:U18997 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 PDB:2RDO PDBsum:2RDO EMBL:D13267
HOGENOM:HOG000036265 eggNOG:COG0261 KO:K02888 PANTHER:PTHR21349
TIGRFAMs:TIGR00061 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12
PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y
PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS
PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2I2T PDB:2I2V
PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG
PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2WWQ
PDB:2Z4L PDB:2Z4N PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P
PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01
PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ
PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR
PDB:4GAU PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM
PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG
PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ
PDBsum:2QP1 PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3E1B
PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R
PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU
PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT
PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ
PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR
PDBsum:4GAU PDB:3BBX PDBsum:3BBX ProtClustDB:PRK05573 OMA:KVTIIKF
PIR:JS0766 RefSeq:NP_417653.1 RefSeq:YP_491371.1
ProteinModelPortal:P0AG48 SMR:P0AG48 DIP:DIP-47852N IntAct:P0AG48
MINT:MINT-1280768 SWISS-2DPAGE:P0AG48 PaxDb:P0AG48 PRIDE:P0AG48
EnsemblBacteria:EBESCT00000003884 EnsemblBacteria:EBESCT00000017503
GeneID:12932080 GeneID:949057 KEGG:ecj:Y75_p3106 KEGG:eco:b3186
PATRIC:32121792 EchoBASE:EB4295 EcoGene:EG50001
BioCyc:EcoCyc:EG50001-MONOMER BioCyc:ECOL316407:JW3153-MONOMER
EvolutionaryTrace:P0AG48 Genevestigator:P0AG48 Uniprot:P0AG48
Length = 103
Score = 85 (35.0 bits), Expect = 0.00089, P = 0.00089
Identities = 26/103 (25%), Positives = 43/103 (41%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAV 162
++AV G +Q+ V G+ + ++L A + + +VL++ IG P V +
Sbjct: 1 MYAVFQSGGKQHRVSEGQTVRLEKLDIAT-GETVEFAEVLMIANGEEVKIGVPFVDGGVI 59
Query: 163 HAVVEEQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRITGIT 205
A V G GHRQ T ++ITGI+
Sbjct: 60 KAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS 102
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 222 157 0.00079 106 3 11 22 0.50 31
30 0.42 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 563 (60 KB)
Total size of DFA: 134 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.78u 0.17s 12.95t Elapsed: 00:00:01
Total cpu time: 12.78u 0.17s 12.95t Elapsed: 00:00:01
Start: Mon May 20 23:52:41 2013 End: Mon May 20 23:52:42 2013