Query 027519
Match_columns 222
No_of_seqs 133 out of 1114
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:49:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_T Ribosomal protein L21; 100.0 4.1E-59 1.4E-63 411.9 -3.1 210 8-217 4-238 (257)
2 3r8s_R 50S ribosomal protein L 100.0 1.2E-43 4E-48 277.7 13.3 103 103-206 1-103 (103)
3 3v2d_V 50S ribosomal protein L 100.0 1.3E-42 4.3E-47 271.2 13.7 101 103-206 1-101 (101)
4 2zjr_O 50S ribosomal protein L 100.0 5.2E-42 1.8E-46 267.1 3.4 99 103-205 1-99 (100)
5 2lc4_A PILP protein; type IV p 70.4 4.7 0.00016 31.4 4.2 25 100-124 40-64 (111)
6 2y4x_A PILP protein; biosynthe 68.7 5.3 0.00018 30.0 4.0 25 100-124 33-57 (93)
7 2ivw_A PILP pilot protein; lip 65.4 6.2 0.00021 30.8 3.9 26 100-125 36-61 (113)
8 2ozj_A Cupin 2, conserved barr 63.9 7.8 0.00027 27.7 4.0 22 105-126 69-90 (114)
9 4av2_M PILP protein, type IV p 63.1 7.8 0.00027 32.2 4.3 25 99-123 103-127 (181)
10 3lwc_A Uncharacterized protein 59.6 9.9 0.00034 28.6 4.1 22 105-126 70-91 (119)
11 4i4a_A Similar to unknown prot 59.5 10 0.00034 27.5 4.0 22 105-126 65-86 (128)
12 1v70_A Probable antibiotics sy 58.6 12 0.0004 25.4 4.0 21 106-126 61-81 (105)
13 3fjs_A Uncharacterized protein 56.8 9.7 0.00033 27.9 3.5 20 107-126 69-88 (114)
14 2opk_A Hypothetical protein; p 55.7 6.8 0.00023 28.8 2.5 22 105-126 64-87 (112)
15 2gu9_A Tetracenomycin polyketi 54.4 12 0.0004 26.0 3.5 21 106-126 56-76 (113)
16 2pfw_A Cupin 2, conserved barr 53.6 15 0.00052 26.0 4.0 20 106-125 66-85 (116)
17 2arc_A ARAC, arabinose operon 53.5 14 0.00049 27.3 4.0 22 105-126 49-70 (164)
18 3d82_A Cupin 2, conserved barr 52.3 9.4 0.00032 26.2 2.7 21 106-126 62-82 (102)
19 3cew_A Uncharacterized cupin p 51.7 13 0.00045 27.0 3.5 22 105-126 59-80 (125)
20 2pyt_A Ethanolamine utilizatio 51.5 16 0.00053 28.1 4.0 21 106-126 87-107 (133)
21 1o5u_A Novel thermotoga mariti 51.5 14 0.00047 27.1 3.6 22 105-126 60-82 (101)
22 1yhf_A Hypothetical protein SP 51.2 17 0.00059 25.6 4.0 20 106-125 72-91 (115)
23 3l2h_A Putative sugar phosphat 50.6 16 0.00055 27.9 4.0 21 106-126 80-100 (162)
24 4axo_A EUTQ, ethanolamine util 50.5 16 0.00054 29.4 4.0 20 107-126 97-116 (151)
25 2wg5_A General control protein 50.5 6.8 0.00023 29.8 1.8 34 104-140 51-85 (109)
26 2vpv_A Protein MIF2, MIF2P; nu 49.2 17 0.00057 29.7 4.0 20 107-126 123-142 (166)
27 3kgz_A Cupin 2 conserved barre 48.6 18 0.0006 28.5 4.0 22 105-126 75-96 (156)
28 3ibm_A Cupin 2, conserved barr 47.8 18 0.00063 28.5 4.0 21 106-126 88-108 (167)
29 4h7l_A Uncharacterized protein 47.7 9.6 0.00033 31.1 2.4 26 101-126 67-100 (157)
30 1o4t_A Putative oxalate decarb 46.4 17 0.00059 27.1 3.5 20 106-125 90-109 (133)
31 2i45_A Hypothetical protein; n 46.2 16 0.00053 25.8 3.1 22 105-126 59-81 (107)
32 4e2g_A Cupin 2 conserved barre 45.9 19 0.00063 26.0 3.5 20 106-125 73-92 (126)
33 1y9q_A Transcriptional regulat 45.4 21 0.00071 28.0 4.0 21 106-126 138-158 (192)
34 2o8q_A Hypothetical protein; c 43.4 22 0.00076 26.0 3.7 21 106-126 76-97 (134)
35 3h8u_A Uncharacterized conserv 43.2 16 0.00053 26.4 2.7 22 105-126 71-93 (125)
36 2b8m_A Hypothetical protein MJ 41.9 15 0.00051 26.3 2.4 21 105-125 58-79 (117)
37 3jzv_A Uncharacterized protein 41.5 26 0.00089 27.8 4.0 21 106-126 85-105 (166)
38 3ht1_A REMF protein; cupin fol 40.3 22 0.00075 26.0 3.2 21 106-126 71-93 (145)
39 1sef_A Conserved hypothetical 39.6 27 0.00091 29.5 4.0 22 105-126 214-235 (274)
40 4e2q_A Ureidoglycine aminohydr 39.3 26 0.00091 30.5 4.0 22 105-126 218-239 (266)
41 2lnv_A General secretion pathw 39.1 20 0.00069 27.4 2.9 26 98-123 35-60 (104)
42 3i7d_A Sugar phosphate isomera 37.8 33 0.0011 26.7 4.0 21 106-126 77-97 (163)
43 3h43_A Proteasome-activating n 37.6 13 0.00044 27.2 1.5 35 103-140 31-66 (85)
44 3bcw_A Uncharacterized protein 37.1 27 0.00091 26.6 3.3 21 106-126 80-101 (123)
45 2q30_A Uncharacterized protein 37.1 17 0.00059 25.2 2.1 21 106-126 67-88 (110)
46 1vj2_A Novel manganese-contain 36.8 22 0.00074 26.1 2.7 21 106-126 80-100 (126)
47 3rns_A Cupin 2 conserved barre 35.1 30 0.001 28.4 3.5 22 105-126 184-205 (227)
48 2fqp_A Hypothetical protein BP 34.9 35 0.0012 23.7 3.5 21 105-125 50-72 (97)
49 1rc6_A Hypothetical protein YL 34.9 25 0.00085 29.3 3.0 21 105-125 211-231 (261)
50 2bnm_A Epoxidase; oxidoreducta 34.0 41 0.0014 26.2 4.0 21 106-126 152-176 (198)
51 1sfn_A Conserved hypothetical 34.0 38 0.0013 28.2 4.0 20 106-125 198-217 (246)
52 3h7j_A Bacilysin biosynthesis 32.9 41 0.0014 27.7 4.0 22 105-126 177-198 (243)
53 2wfw_A ARC; ATP-binding protei 32.4 1.4E+02 0.0049 24.3 7.0 39 103-144 20-58 (153)
54 3ddy_A Lumazine protein, LUMP; 31.4 49 0.0017 27.5 4.2 90 103-196 48-138 (186)
55 1lr5_A Auxin binding protein 1 31.4 41 0.0014 25.6 3.6 20 106-125 73-101 (163)
56 3m9b_A Proteasome-associated A 31.1 13 0.00043 32.8 0.6 37 101-140 109-145 (251)
57 2f4p_A Hypothetical protein TM 29.0 38 0.0013 25.7 3.0 22 105-126 79-101 (147)
58 3rns_A Cupin 2 conserved barre 28.3 38 0.0013 27.7 3.0 20 106-125 69-88 (227)
59 1rc6_A Hypothetical protein YL 27.6 46 0.0016 27.7 3.5 20 106-125 93-112 (261)
60 1y3t_A Hypothetical protein YX 27.4 56 0.0019 27.5 4.0 20 107-126 252-271 (337)
61 2oa2_A BH2720 protein; 1017534 26.3 37 0.0013 25.6 2.4 20 106-125 76-101 (148)
62 3oss_C Type 2 secretion system 26.2 45 0.0015 23.6 2.7 39 102-146 19-59 (68)
63 1y3t_A Hypothetical protein YX 24.0 71 0.0024 26.9 4.0 21 106-126 79-99 (337)
64 1sq4_A GLXB, glyoxylate-induce 23.9 49 0.0017 28.2 3.0 20 106-125 102-121 (278)
65 1sq4_A GLXB, glyoxylate-induce 23.6 70 0.0024 27.3 4.0 21 106-126 224-244 (278)
66 1sfn_A Conserved hypothetical 23.5 46 0.0016 27.7 2.7 21 106-126 80-100 (246)
67 2ztd_A Holliday junction ATP-d 22.3 1.4E+02 0.0048 25.1 5.5 46 102-153 30-77 (212)
68 1sef_A Conserved hypothetical 22.2 49 0.0017 27.8 2.7 20 106-125 96-115 (274)
69 3bs1_A Accessory gene regulato 21.7 1.1E+02 0.0036 21.5 4.0 26 102-127 5-30 (103)
70 1zrr_A E-2/E-2' protein; nicke 20.9 37 0.0013 27.8 1.5 17 109-125 117-135 (179)
71 2vd8_A Alanine racemase; pyrid 20.5 1.1E+02 0.0038 26.9 4.7 31 108-138 305-338 (391)
No 1
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.1e-59 Score=411.85 Aligned_cols=210 Identities=59% Similarity=0.815 Sum_probs=102.9
Q ss_pred HHHHH-hhhcCcccccCCC-CCCCCCCCcccCCCCCCC-CCC-C-------cccCCCcccCcccC-----CCCCCC----
Q 027519 8 ATLAL-CSSLTSHCKISCQ-NPNPHPQLSLSKSKLCSF-PSP-K-------LYTRPTFSFTHKFS-----QTEPPP---- 67 (222)
Q Consensus 8 ~~~~~-c~s~~~~c~~~~~-~~~~~~~~~~s~~~~~~~-~~t-~-------~~~r~~~~~~~~~~-----~~~~~~---- 67 (222)
++++| ||||++||+|+++ ||++..++.+|+|++|.+ |++ + ..+|++|++.|+++ |++..+
T Consensus 4 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (257)
T 3bbo_T 4 ATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRRFQEIPEELKAEFEEFQRPPNQKP 83 (257)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEeeeccceeeeeccCCCCCccccccccCCccccccCCCcccccccccccccCcccccchhhhhhchhhhccccccCc
Confidence 34677 9999999999999 888888888999999877 655 2 23599999999988 665421
Q ss_pred -CCCCCCCchhhhhcccCCchH-HHHHh--hccCCCCCC-eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEE
Q 027519 68 -VSEPEVEPEAALEAEAEPTTE-VVESA--AKEEPKREE-IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVL 142 (222)
Q Consensus 68 -~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~-mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVL 142 (222)
+.+.|.+.+++|+++---+.+ .++.+ +.+..++.+ |||||++|||||||++||+|+|++|+++++||+|+|++||
T Consensus 84 ~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~~~~MYAIIetGGKQYKV~~GD~I~VEKL~~aevGd~V~LdkVL 163 (257)
T 3bbo_T 84 QLSDVLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVL 163 (257)
T ss_dssp ----------------------------------------CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTCC
T ss_pred ceeecCCCccCCcccccccccccccccccccccCCCcCCCeEEEEEECCEEEEEeCCCEEEEeCCCCCCCCCEEEEEEEE
Confidence 222222222344444111222 22222 234455555 9999999999999999999999999878999999999999
Q ss_pred EEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecCCCCceeccCccCCceEEEEeeEeeCCCCCcccccc
Q 027519 143 LVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS 217 (222)
Q Consensus 143 lvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KRRK~yrRk~GHRQ~~TrLrI~~I~~~~~~p~~~~~~ 217 (222)
|+|+++++.+|.|||++++|+|+|++|+|++||+||||||||+|||++||||+||+|||++|.+++.+|++++|.
T Consensus 164 lVg~~d~t~VG~P~V~gAkV~AtVveh~KgkKIiVFK~KRRK~yRRk~GHRQ~~T~LrI~~I~~~g~~~~~~~~~ 238 (257)
T 3bbo_T 164 LVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA 238 (257)
T ss_dssp CBCSSSCBCCSSSSCSSCCCEEECCCCCCCSCCCEEECCTTTTCCEEECCCCCCCCCCCCCCCC-----------
T ss_pred EEeCCCCeEeCCcccCCCEEEEEEEeecCCCcEEEEEeCCCCCCcCCCCccCCcEEEEEEEEEcCCCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=100.00 E-value=1.2e-43 Score=277.69 Aligned_cols=103 Identities=30% Similarity=0.530 Sum_probs=100.8
Q ss_pred eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK 182 (222)
Q Consensus 103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR 182 (222)
|||||++|||||+|++||+|+||+|+ +++||+|+|++|||+++++++.+|.|||++|+|+|+|++|+|++|+++|||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~~VLlv~~~~~~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr 79 (103)
T 3r8s_R 1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRR 79 (103)
T ss_dssp CEEEEECSSSEEEEETTCEEEESCCC-SCTTCEEEECCEEEEESSSEEECSSSSCTTCEEEEEEEEEEECCCEEEEEEET
T ss_pred CEEEEEECCEEEEEeCCCEEEECCcC-CCCCCEEEEeEEEEEecCCCEEECCcccCCcEEEEEEEeccCCCcEEEEEecC
Confidence 99999999999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCccCCceEEEEeeEee
Q 027519 183 KKNYRRNIGHRQPNTRIRITGITG 206 (222)
Q Consensus 183 RK~yrRk~GHRQ~~TrLrI~~I~~ 206 (222)
||+|||++||||+||+|+|++|.+
T Consensus 80 rK~yrrk~GHRQ~~T~l~I~~I~~ 103 (103)
T 3r8s_R 80 RKHYRKQQGHRQWFTDVKITGISA 103 (103)
T ss_dssp TTTEEEEEEECCEEEEEEEEEEEC
T ss_pred CCCccCCCcccCCeEEEEEEEEEC
Confidence 999999999999999999999963
No 3
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=100.00 E-value=1.3e-42 Score=271.15 Aligned_cols=101 Identities=43% Similarity=0.648 Sum_probs=97.4
Q ss_pred eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK 182 (222)
Q Consensus 103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR 182 (222)
|||||++|||||+|++||+|+||+|+ +++||+|+|+ |||+++++ +.+|+|||++|+|+|+|++|+|++|+++|||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~~~-~~iG~P~v~~a~V~a~V~~~~k~~Kv~vfK~kr 77 (101)
T 3v2d_V 1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELP-VLLLGGEK-TVVGTPVVEGASVVAEVLGHGRGKKILVSKFKA 77 (101)
T ss_dssp CEEEEEETTEEEEECTTCEEEESCCS-CCTTCEEEEC-EEEEESSS-CEECSSSCSSCCEEEEEEEEEECCCEEEEEEET
T ss_pred CEEEEEeCCEEEEEeCCCEEEECCcC-CCCCCEEEEE-EEEECCCc-eEECCcccCCCEEEEEEeeccCCCcEEEEEECC
Confidence 99999999999999999999999996 8999999999 99998554 999999999999999999999999999999999
Q ss_pred CCCceeccCccCCceEEEEeeEee
Q 027519 183 KKNYRRNIGHRQPNTRIRITGITG 206 (222)
Q Consensus 183 RK~yrRk~GHRQ~~TrLrI~~I~~ 206 (222)
||+|||++||||+||+|+|++|.+
T Consensus 78 rK~yrrk~GHRQ~~T~l~I~~I~g 101 (101)
T 3v2d_V 78 KVQYRRKKGHRQPYTELLIKEIRG 101 (101)
T ss_dssp TTTEEEEEEECCEEEEEEEEEECC
T ss_pred CCCcCCCCcccCCeEEEEEEEEeC
Confidence 999999999999999999999964
No 4
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=100.00 E-value=5.2e-42 Score=267.14 Aligned_cols=99 Identities=38% Similarity=0.592 Sum_probs=92.5
Q ss_pred eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccCcEEEEEEEeeccCCcEEEEEecC
Q 027519 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVIVFKYKK 182 (222)
Q Consensus 103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~a~V~A~Vleh~k~~KI~VfK~KR 182 (222)
|||||++|||||+|++||+|+||+|+ +++||+|+|+ |||+++ +++.+|.| |++|+|+|+|++|+|++|+++|||||
T Consensus 1 myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv~~-~~~~iG~P-v~~a~V~a~V~~~~k~~Kv~vfK~kr 76 (100)
T 2zjr_O 1 MFAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELK-ALFVGG-EQTVFGED-AGKYTVQAEVVEHGRGKKIYIRKYKS 76 (100)
T ss_dssp ----CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECC-SCEETT-SCEECSST-TTTSCEEEEEEECCBCCCEEEEEECS
T ss_pred CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEE-EEEEcC-CCeEECCc-CCCCEEEEEEEeecCCCcEEEEEECC
Confidence 89999999999999999999999996 8999999999 999998 88999999 99999999999999999999999999
Q ss_pred CCCceeccCccCCceEEEEeeEe
Q 027519 183 KKNYRRNIGHRQPNTRIRITGIT 205 (222)
Q Consensus 183 RK~yrRk~GHRQ~~TrLrI~~I~ 205 (222)
||+|||++||||+||+|+|++|.
T Consensus 77 rK~yrrk~GHRQ~~T~l~I~~I~ 99 (100)
T 2zjr_O 77 GVQYRRRTGHRQNFTAIKILGIQ 99 (100)
T ss_dssp SSCCEEEEEECCBEEEEECCCC-
T ss_pred CCCCcCCCCccCCcEEEEEEEEE
Confidence 99999999999999999999996
No 5
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=70.37 E-value=4.7 Score=31.37 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.9
Q ss_pred CCCeEEEEEECCEEEEEcCCCEEEE
Q 027519 100 REEIFAVVMIGSRQYIVFPGRFIYT 124 (222)
Q Consensus 100 ~~~mYAIVeigGkQYkV~~GD~I~V 124 (222)
....+|+|+..|+=|+|.+|++|-.
T Consensus 40 ~~~~~ALV~~dG~vyrVk~G~ylG~ 64 (111)
T 2lc4_A 40 AQGTFALVKGAGGVHRVRVGDYLGR 64 (111)
T ss_dssp TTEEEEEEEETTEEEEEETTCEETT
T ss_pred CCeEEEEEEeCCcEEEEccCCEecc
Confidence 4569999999999999999999843
No 6
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=68.66 E-value=5.3 Score=30.02 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.9
Q ss_pred CCCeEEEEEECCEEEEEcCCCEEEE
Q 027519 100 REEIFAVVMIGSRQYIVFPGRFIYT 124 (222)
Q Consensus 100 ~~~mYAIVeigGkQYkV~~GD~I~V 124 (222)
....+|+|+..|+=|+|..|++|-.
T Consensus 33 ~~~~~ALV~~dg~v~~V~~G~yiG~ 57 (93)
T 2y4x_A 33 AQGTFALVKGAGGVHRVRVGDYLGR 57 (93)
T ss_dssp TTEEEEEEEETTEEEEECTTCEETT
T ss_pred CCeEEEEEEeCCCEEEEccCCEecc
Confidence 4569999999999999999999843
No 7
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=65.41 E-value=6.2 Score=30.80 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=22.4
Q ss_pred CCCeEEEEEECCEEEEEcCCCEEEEc
Q 027519 100 REEIFAVVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 100 ~~~mYAIVeigGkQYkV~~GD~I~Ve 125 (222)
....||+|+..|+=|+|..|++|=.+
T Consensus 36 ~~~~~ALV~~dG~vyrVk~G~yiG~N 61 (113)
T 2ivw_A 36 GQKVSGFIEAEGYVYTVGVGNYLGQN 61 (113)
T ss_dssp SSSEEEEEEETTEEEEECSSEEETTT
T ss_pred CCeEEEEEEeCCcEEEEccCCEeccC
Confidence 45699999999999999999998433
No 8
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=63.94 E-value=7.8 Score=27.70 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=18.7
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ver 126 (222)
+.+.++|+.|.+.+||.+.++.
T Consensus 69 ~~~~i~~~~~~l~~Gd~i~i~~ 90 (114)
T 2ozj_A 69 AVITFDDQKIDLVPEDVLMVPA 90 (114)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEecCCCEEEECC
Confidence 3467899999999999999883
No 9
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=63.06 E-value=7.8 Score=32.20 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=22.2
Q ss_pred CCCCeEEEEEECCEEEEEcCCCEEE
Q 027519 99 KREEIFAVVMIGSRQYIVFPGRFIY 123 (222)
Q Consensus 99 ~~~~mYAIVeigGkQYkV~~GD~I~ 123 (222)
.....||+|+..|+=|+|..|++|=
T Consensus 103 ~~~~~~alv~~dg~v~~V~~G~ylG 127 (181)
T 4av2_M 103 SGQKVSGFIEAEGYVYTVGVGNYLG 127 (181)
T ss_dssp SSSCCEEEEEETTEEEEECSSEEET
T ss_pred eCCEEEEEEecCCCEEEEccCCEec
Confidence 3567999999999999999999873
No 10
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=59.63 E-value=9.9 Score=28.56 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ver 126 (222)
+.+.++|+.|.+.+||.+.++.
T Consensus 70 ~~~~~~g~~~~l~~GD~v~ip~ 91 (119)
T 3lwc_A 70 LSVSTDGETVTAGPGEIVYMPK 91 (119)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 3467899999999999999874
No 11
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=59.55 E-value=10 Score=27.52 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=18.7
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ver 126 (222)
+.+.++|+.|.+.+||.+.++.
T Consensus 65 ~~~~i~~~~~~l~~Gd~~~i~~ 86 (128)
T 4i4a_A 65 AIIRINDEDFPVTKGDLIIIPL 86 (128)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCcEEEECC
Confidence 3467899999999999999883
No 12
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=58.56 E-value=12 Score=25.39 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.8
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.+.++.
T Consensus 61 ~~~~~~~~~~l~~Gd~~~ip~ 81 (105)
T 1v70_A 61 VVRVGEEEALLAPGMAAFAPA 81 (105)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 367889999999999998873
No 13
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=56.84 E-value=9.7 Score=27.86 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=18.2
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 027519 107 VMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 107 VeigGkQYkV~~GD~I~Ver 126 (222)
+.++|+.|.+.+||.+.++.
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~ 88 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGA 88 (114)
T ss_dssp EEETTEEEEECTTEEEEECT
T ss_pred EEECCEEEEECCCCEEEECC
Confidence 68999999999999999984
No 14
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=55.72 E-value=6.8 Score=28.76 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=18.9
Q ss_pred EEEEECCEE--EEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQ--YIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQ--YkV~~GD~I~Ver 126 (222)
+.+.++|+. |.+.+||.++++.
T Consensus 64 ~~l~~~~~~~~~~l~~Gd~i~ipa 87 (112)
T 2opk_A 64 AGIECEGDTAPRVMRPGDWLHVPA 87 (112)
T ss_dssp EEEEETTCSSCEEECTTEEEEECT
T ss_pred EEEEECCEEEEEEECCCCEEEECC
Confidence 457789998 9999999999983
No 15
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=54.42 E-value=12 Score=26.01 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=18.0
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.+.++.
T Consensus 56 ~~~~~~~~~~l~~Gd~~~i~~ 76 (113)
T 2gu9_A 56 EAIVDGHTQALQAGSLIAIER 76 (113)
T ss_dssp EEEETTEEEEECTTEEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 356889999999999999983
No 16
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=53.55 E-value=15 Score=25.98 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=17.6
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ve 125 (222)
.+.++|+.|.+.+||.+.++
T Consensus 66 ~~~~~~~~~~l~~Gd~~~ip 85 (116)
T 2pfw_A 66 HVNVDGVIKVLTAGDSFFVP 85 (116)
T ss_dssp EEEETTEEEEECTTCEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEC
Confidence 46778999999999999988
No 17
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=53.55 E-value=14 Score=27.32 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ver 126 (222)
+.+.++|+.|.+.+||.+.++.
T Consensus 49 ~~~~i~~~~~~l~~Gd~~~i~p 70 (164)
T 2arc_A 49 GVVKNQGREFVCRPGDILLFPP 70 (164)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEecCCeEEEEcC
Confidence 4567899999999999999873
No 18
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=52.25 E-value=9.4 Score=26.19 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=17.4
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.+.++.
T Consensus 62 ~~~~~~~~~~l~~Gd~~~ip~ 82 (102)
T 3d82_A 62 QIAFRDQNITLQAGEMYVIPK 82 (102)
T ss_dssp EEECSSCEEEEETTEEEEECT
T ss_pred EEEECCEEEEEcCCCEEEECC
Confidence 456788899999999998873
No 19
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=51.70 E-value=13 Score=27.01 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=19.2
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ver 126 (222)
+.+.++|+.|.+.+||.+.++.
T Consensus 59 ~~~~i~~~~~~l~~Gd~i~i~~ 80 (125)
T 3cew_A 59 GFITIDGEKIELQAGDWLRIAP 80 (125)
T ss_dssp EEEEETTEEEEEETTEEEEECT
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 4578999999999999999973
No 20
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=51.53 E-value=16 Score=28.11 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=17.5
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.++++.
T Consensus 87 ~l~~~g~~~~l~~GD~i~~p~ 107 (133)
T 2pyt_A 87 HVRHEGETMIAKAGDVMFIPK 107 (133)
T ss_dssp EEEETTEEEEEETTCEEEECT
T ss_pred EEEECCEEEEECCCcEEEECC
Confidence 467889999999999998874
No 21
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=51.51 E-value=14 Score=27.11 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=17.9
Q ss_pred EEEEEC-CEEEEEcCCCEEEEcc
Q 027519 105 AVVMIG-SRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeig-GkQYkV~~GD~I~Ver 126 (222)
+.+.++ |..|.+.+||.+.++.
T Consensus 60 ~~~~i~~g~~~~l~~GD~i~ip~ 82 (101)
T 1o5u_A 60 VEVTTEDGKKYVIEKGDLVTFPK 82 (101)
T ss_dssp EEEEETTCCEEEEETTCEEEECT
T ss_pred EEEEECCCCEEEECCCCEEEECC
Confidence 346787 8999999999998873
No 22
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=51.24 E-value=17 Score=25.63 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.2
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ve 125 (222)
.+.++|+.|.+.+||.+.++
T Consensus 72 ~~~~~~~~~~l~~Gd~~~ip 91 (115)
T 1yhf_A 72 EITIDQETYRVAEGQTIVMP 91 (115)
T ss_dssp EEEETTEEEEEETTCEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 35688999999999999887
No 23
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=50.63 E-value=16 Score=27.89 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.4
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.+.++.
T Consensus 80 ~~~~~~~~~~l~~Gd~i~i~~ 100 (162)
T 3l2h_A 80 TLTMENDQYPIAPGDFVGFPC 100 (162)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 367899999999999999884
No 24
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=50.52 E-value=16 Score=29.36 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=17.8
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 027519 107 VMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 107 VeigGkQYkV~~GD~I~Ver 126 (222)
+.++|+.|.+.+||.++++.
T Consensus 97 l~i~g~~~~l~~GD~i~iP~ 116 (151)
T 4axo_A 97 IIIDGRKVSASSGELIFIPK 116 (151)
T ss_dssp EEETTEEEEEETTCEEEECT
T ss_pred EEECCEEEEEcCCCEEEECC
Confidence 56899999999999999874
No 25
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=50.48 E-value=6.8 Score=29.84 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=27.1
Q ss_pred EEEEEEC-CEEEEEcCCCEEEEcccCCCCCCCeEEEce
Q 027519 104 FAVVMIG-SRQYIVFPGRFIYTQRLKGANVNDKIILNK 140 (222)
Q Consensus 104 YAIVeig-GkQYkV~~GD~I~Verlk~~~~Gd~I~l~k 140 (222)
.|||.++ |..|.|.....|+.+.| ++|+.|.|++
T Consensus 51 ~~iVk~s~g~~~~V~v~~~Vd~~~L---kpG~rVaLn~ 85 (109)
T 2wg5_A 51 RVVVKSSTGPKFVVNTSQYINEEEL---KPGARVALNQ 85 (109)
T ss_dssp CEEEEETTSCEEEECBCTTSCTTTC---CTTCEEEEET
T ss_pred EEEEEeCCCCEEEEEcccccCHHHC---CCCCEEEECC
Confidence 3677777 88899999998777665 5999988765
No 26
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=49.20 E-value=17 Score=29.71 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=18.6
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 027519 107 VMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 107 VeigGkQYkV~~GD~I~Ver 126 (222)
+.++|+.|.+.+||.++++.
T Consensus 123 vtl~g~~~~L~~Gds~~iP~ 142 (166)
T 2vpv_A 123 VTVCKNKFLSVKGSTFQIPA 142 (166)
T ss_dssp EEETTEEEEEETTCEEEECT
T ss_pred EEECCEEEEEcCCCEEEECC
Confidence 78999999999999999984
No 27
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=48.61 E-value=18 Score=28.51 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=19.3
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ver 126 (222)
+.+.++|+.|.+.+||.++++.
T Consensus 75 ~~v~v~g~~~~l~~Gd~i~ip~ 96 (156)
T 3kgz_A 75 GQCLVGETISDVAQGDLVFIPP 96 (156)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 4567999999999999999983
No 28
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=47.80 E-value=18 Score=28.46 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.5
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.+.++.
T Consensus 88 ~~~i~~~~~~l~~Gd~i~ip~ 108 (167)
T 3ibm_A 88 EVVLDDRVEPLTPLDCVYIAP 108 (167)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 356999999999999999984
No 29
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=47.75 E-value=9.6 Score=31.08 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.0
Q ss_pred CCeEEEEE--------ECCEEEEEcCCCEEEEcc
Q 027519 101 EEIFAVVM--------IGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 101 ~~mYAIVe--------igGkQYkV~~GD~I~Ver 126 (222)
.+.|-|++ ++|+.|.|.+||.|.++.
T Consensus 67 ~E~~yVLe~~G~g~v~idge~~~l~~GD~v~IPp 100 (157)
T 4h7l_A 67 QEIYVVLDHAAHATIELNGQSYPLTKLLAISIPP 100 (157)
T ss_dssp EEEEEEEEECTTCEEEETTEEEECCTTEEEEECT
T ss_pred cEEEEEEecCcEEEEEECCEEEEeCCCCEEEECC
Confidence 46777777 999999999999999983
No 30
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=46.40 E-value=17 Score=27.08 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=17.4
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ve 125 (222)
.+.++|+.|.+.+||.+.++
T Consensus 90 ~~~i~~~~~~l~~Gd~i~i~ 109 (133)
T 1o4t_A 90 VFHDNGKDVPIKAGDVCFTD 109 (133)
T ss_dssp EEEETTEEEEEETTEEEEEC
T ss_pred EEEECCEEEEeCCCcEEEEC
Confidence 36789999999999999887
No 31
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=46.23 E-value=16 Score=25.82 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=18.3
Q ss_pred EEEEECC-EEEEEcCCCEEEEcc
Q 027519 105 AVVMIGS-RQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigG-kQYkV~~GD~I~Ver 126 (222)
+.+.++| +.|.+.+||.+.++.
T Consensus 59 ~~~~~~~~~~~~l~~Gd~~~ip~ 81 (107)
T 2i45_A 59 MAVDFADGGSMTIREGEMAVVPK 81 (107)
T ss_dssp EEEEETTSCEEEECTTEEEEECT
T ss_pred EEEEECCCcEEEECCCCEEEECC
Confidence 3467888 999999999999873
No 32
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=45.92 E-value=19 Score=25.97 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=17.8
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ve 125 (222)
.+.++|+.|.+.+||.+.++
T Consensus 73 ~~~~~~~~~~l~~Gd~~~ip 92 (126)
T 4e2g_A 73 ELTIGEETRVLRPGMAYTIP 92 (126)
T ss_dssp EEEETTEEEEECTTEEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEC
Confidence 36788999999999999998
No 33
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=45.37 E-value=21 Score=27.99 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=18.3
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.++++.
T Consensus 138 ~~~~~~~~~~l~~GD~i~i~~ 158 (192)
T 1y9q_A 138 KVFFDEQWHELQQGEHIRFFS 158 (192)
T ss_dssp EEEETTEEEEECTTCEEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEcC
Confidence 467899999999999999983
No 34
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=43.40 E-value=22 Score=25.97 Aligned_cols=21 Identities=5% Similarity=-0.004 Sum_probs=18.2
Q ss_pred EEEECC-EEEEEcCCCEEEEcc
Q 027519 106 VVMIGS-RQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigG-kQYkV~~GD~I~Ver 126 (222)
.+.++| +.|.+.+||.+.++.
T Consensus 76 ~~~~~~~~~~~l~~Gd~~~ip~ 97 (134)
T 2o8q_A 76 EFEYEDIGAVMLEAGGSAFQPP 97 (134)
T ss_dssp EEEETTTEEEEEETTCEEECCT
T ss_pred EEEECCcEEEEecCCCEEEECC
Confidence 367888 999999999999973
No 35
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=43.15 E-value=16 Score=26.43 Aligned_cols=22 Identities=9% Similarity=-0.076 Sum_probs=18.1
Q ss_pred EEEEE-CCEEEEEcCCCEEEEcc
Q 027519 105 AVVMI-GSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVei-gGkQYkV~~GD~I~Ver 126 (222)
+.+.+ +|+.|.+.+||.+.++.
T Consensus 71 ~~~~~~~~~~~~l~~Gd~~~i~~ 93 (125)
T 3h8u_A 71 AEYHQGNGIVTHLKAGDIAIAKP 93 (125)
T ss_dssp EEEECSTTCEEEEETTEEEEECT
T ss_pred EEEEECCCeEEEeCCCCEEEECC
Confidence 44567 89999999999999873
No 36
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=41.90 E-value=15 Score=26.29 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=18.2
Q ss_pred EEEEECCEEE-EEcCCCEEEEc
Q 027519 105 AVVMIGSRQY-IVFPGRFIYTQ 125 (222)
Q Consensus 105 AIVeigGkQY-kV~~GD~I~Ve 125 (222)
+.+.++|+.| .+.+||.+.++
T Consensus 58 ~~~~i~~~~~~~l~~Gd~i~ip 79 (117)
T 2b8m_A 58 MTLTLEDQEPHNYKEGNIVYVP 79 (117)
T ss_dssp EEEEETTSCCEEEETTCEEEEC
T ss_pred EEEEECCEEEEEeCCCCEEEEC
Confidence 3567899999 99999999988
No 37
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=41.52 E-value=26 Score=27.82 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.7
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.+.++.
T Consensus 85 ~~~v~g~~~~l~~GD~i~ip~ 105 (166)
T 3jzv_A 85 HAMVGRAVSAVAPYDLVTIPG 105 (166)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 368999999999999999983
No 38
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=40.25 E-value=22 Score=25.99 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=18.0
Q ss_pred EEE--ECCEEEEEcCCCEEEEcc
Q 027519 106 VVM--IGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVe--igGkQYkV~~GD~I~Ver 126 (222)
.+. ++|+.|.+.+||.+.++.
T Consensus 71 ~~~~~~~~~~~~l~~Gd~~~ip~ 93 (145)
T 3ht1_A 71 GLVLPDQGRTEEVGPGEAIFIPR 93 (145)
T ss_dssp EEEEGGGTEEEEECTTCEEEECT
T ss_pred EEEEeECCEEEEECCCCEEEECC
Confidence 356 899999999999999983
No 39
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=39.58 E-value=27 Score=29.51 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ver 126 (222)
+.+.++|+.|.+.+||.+.++.
T Consensus 214 ~~~~i~~~~~~l~~GD~i~i~~ 235 (274)
T 1sef_A 214 GMYNLDNEWYPVEKGDYIFMSA 235 (274)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 4567999999999999999983
No 40
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=39.26 E-value=26 Score=30.54 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ver 126 (222)
+++.++|..|.|++||+|+++-
T Consensus 218 g~y~l~~~~~~V~~GD~i~~~~ 239 (266)
T 4e2q_A 218 GIYRLGDNWYPVQAGDVIWMAP 239 (266)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEecCCCEEEECC
Confidence 5788999999999999999873
No 41
>2lnv_A General secretion pathway protein C; transport protein; NMR {Dickeya dadantii}
Probab=39.11 E-value=20 Score=27.42 Aligned_cols=26 Identities=8% Similarity=-0.001 Sum_probs=22.3
Q ss_pred CCCCCeEEEEEECCEEEEEcCCCEEE
Q 027519 98 PKREEIFAVVMIGSRQYIVFPGRFIY 123 (222)
Q Consensus 98 ~~~~~mYAIVeigGkQYkV~~GD~I~ 123 (222)
.....-+|||+.+|+|.....||.|.
T Consensus 35 ~~~~~S~AII~~~g~Q~~Y~vGd~I~ 60 (104)
T 2lnv_A 35 DDDSRSIAIISKDNEQFSRGVNEEVP 60 (104)
T ss_dssp SSSSSCEEEEESSSCCEEECTTEECS
T ss_pred CCccccEEEEEcCCeEeEEeCCCCcC
Confidence 34567899999999999999999874
No 42
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=37.84 E-value=33 Score=26.73 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=18.5
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.+.++.
T Consensus 77 ~~~~~~~~~~l~~GD~i~ip~ 97 (163)
T 3i7d_A 77 VLVDDQGEHPMVPGDCAAFPA 97 (163)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 367999999999999999984
No 43
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=37.55 E-value=13 Score=27.19 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=27.5
Q ss_pred eEEEEE-ECCEEEEEcCCCEEEEcccCCCCCCCeEEEce
Q 027519 103 IFAVVM-IGSRQYIVFPGRFIYTQRLKGANVNDKIILNK 140 (222)
Q Consensus 103 mYAIVe-igGkQYkV~~GD~I~Verlk~~~~Gd~I~l~k 140 (222)
..|||. ..|..|.|.....|+.+.| ++|+.|.|++
T Consensus 31 ~~~iVkss~g~~~~V~v~~~Vd~~~L---kpG~rVaLn~ 66 (85)
T 3h43_A 31 RKVVVKSSTGPSFLVNVSHFVNPDDL---APGKRVCLNQ 66 (85)
T ss_dssp TEEEEEETTSSEEEEEBCTTSCGGGC---CTTCEEEECT
T ss_pred CEEEEEeCCCCeEEEEecCccCHHHC---CCCCEEEECC
Confidence 457777 6677899998888777766 5999998876
No 44
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=37.15 E-value=27 Score=26.56 Aligned_cols=21 Identities=10% Similarity=-0.034 Sum_probs=15.4
Q ss_pred EEEE-CCEEEEEcCCCEEEEcc
Q 027519 106 VVMI-GSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVei-gGkQYkV~~GD~I~Ver 126 (222)
.+.+ +|..+.+.+||.+.++.
T Consensus 80 ~l~~~~g~~~~l~~GD~~~ip~ 101 (123)
T 3bcw_A 80 RLVDPDGTVHAVKAGDAFIMPE 101 (123)
T ss_dssp EEECTTCCEEEEETTCEEEECT
T ss_pred EEEECCCeEEEECCCCEEEECC
Confidence 3556 77778888888888774
No 45
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=37.09 E-value=17 Score=25.16 Aligned_cols=21 Identities=5% Similarity=-0.129 Sum_probs=16.4
Q ss_pred EEEEC-CEEEEEcCCCEEEEcc
Q 027519 106 VVMIG-SRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeig-GkQYkV~~GD~I~Ver 126 (222)
.+.++ |+.|.+.+||.+.++.
T Consensus 67 ~~~~~~~~~~~l~~Gd~~~ip~ 88 (110)
T 2q30_A 67 EFVGDGDAVIPAPRGAVLVAPI 88 (110)
T ss_dssp EEECGGGCEEEECTTEEEEEET
T ss_pred EEEeCCCEEEEECCCCEEEeCC
Confidence 35676 6889999999998873
No 46
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=36.79 E-value=22 Score=26.12 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.5
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.+.++.
T Consensus 80 ~~~i~~~~~~l~~Gd~i~ip~ 100 (126)
T 1vj2_A 80 TVLKEQGEETVEEGFYIFVEP 100 (126)
T ss_dssp EEECSSCEEEEETTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 356788999999999999873
No 47
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=35.09 E-value=30 Score=28.37 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=18.7
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ver 126 (222)
+.+.++|+.|.+.+||.+.++.
T Consensus 184 ~~~~i~g~~~~l~~Gd~i~ip~ 205 (227)
T 3rns_A 184 GKYYVDGKPFIVKKGESAVLPA 205 (227)
T ss_dssp EEEEETTEEEEEETTEEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 4467899999999999999883
No 48
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=34.94 E-value=35 Score=23.72 Aligned_cols=21 Identities=5% Similarity=-0.154 Sum_probs=17.6
Q ss_pred EEEEECC--EEEEEcCCCEEEEc
Q 027519 105 AVVMIGS--RQYIVFPGRFIYTQ 125 (222)
Q Consensus 105 AIVeigG--kQYkV~~GD~I~Ve 125 (222)
+.+.+++ +.|.+.+||.++++
T Consensus 50 ~~~~~~~g~~~~~l~~Gd~~~~p 72 (97)
T 2fqp_A 50 LLLETPEGSVTSQLTRGVSYTRP 72 (97)
T ss_dssp EEEEETTEEEEEEECTTCCEEEC
T ss_pred EEEEeCCCCEEEEEcCCCEEEeC
Confidence 4567877 78999999999887
No 49
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=34.87 E-value=25 Score=29.33 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=17.3
Q ss_pred EEEEECCEEEEEcCCCEEEEc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ve 125 (222)
+.+.++|+.|.|.+||.++++
T Consensus 211 ~~~~i~~~~~~l~~GD~i~~~ 231 (261)
T 1rc6_A 211 GVYNLDNNWIPVKKGDYIFMG 231 (261)
T ss_dssp EEEESSSCEEEEETTCEEEEC
T ss_pred EEEEECCEEEEeCCCCEEEEC
Confidence 356788889999999999887
No 50
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=34.04 E-value=41 Score=26.24 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=17.1
Q ss_pred EEEECC----EEEEEcCCCEEEEcc
Q 027519 106 VVMIGS----RQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigG----kQYkV~~GD~I~Ver 126 (222)
.+.++| +.|.+.+||.++++.
T Consensus 152 ~~~~~~~~~~~~~~l~~GD~~~~~~ 176 (198)
T 2bnm_A 152 HMKWGDKENPKEALLPTGASMFVEE 176 (198)
T ss_dssp EEEESCTTSCEEEEECTTCEEEECT
T ss_pred EEEECCcCCcccEEECCCCEEEeCC
Confidence 356788 899999999998873
No 51
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=33.96 E-value=38 Score=28.21 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=17.8
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ve 125 (222)
++.++|+-|.|++||.++++
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~ 217 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMG 217 (246)
T ss_dssp EEEETTEEEEEETTCEEEEC
T ss_pred EEEECCEEEEcCCCCEEEEC
Confidence 56789999999999999987
No 52
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=32.88 E-value=41 Score=27.74 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=18.9
Q ss_pred EEEEECCEEEEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQYkV~~GD~I~Ver 126 (222)
+.+.++|+.|.+.+||.+.++.
T Consensus 177 ~~~~i~~~~~~l~~Gd~i~ip~ 198 (243)
T 3h7j_A 177 YDMTVEGCTVEMKFGTAYFCEP 198 (243)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 3478999999999999999883
No 53
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=32.37 E-value=1.4e+02 Score=24.34 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=32.1
Q ss_pred eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEE
Q 027519 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLV 144 (222)
Q Consensus 103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlv 144 (222)
..|=|.++|+.++|...=.|.+..| .+|+++.||+-|.+
T Consensus 20 ~tadV~t~GRkMrv~vsP~vd~~~L---~~Gq~V~LNEal~V 58 (153)
T 2wfw_A 20 KTVDVFTSGRKMRLTCSPNIDTDTL---ALGQTVRLNEALTI 58 (153)
T ss_dssp SCEEEEETTEEEEECBCTTCCGGGC---CTTCEEEECTTCCE
T ss_pred CeEEEEECCcEEEEEeCCCCCHHHC---CCCCEEEECCceEE
Confidence 3588899999999998888877766 59999999876654
No 54
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=31.43 E-value=49 Score=27.51 Aligned_cols=90 Identities=17% Similarity=0.066 Sum_probs=53.8
Q ss_pred eEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEceEEEEecCCceEeccccccC-cEEEEEEEeeccCCcEEEEEec
Q 027519 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNKVLLVGTKTTTYIGKPVVTN-AAVHAVVEEQGLNPKVIVFKYK 181 (222)
Q Consensus 103 mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~kVLlvgs~~~t~iG~P~v~~-a~V~A~Vleh~k~~KI~VfK~K 181 (222)
..=|+++.+..|.|.....+..-.|...++||.|-|++-|.++++ +|.=++.| +-=.|+|++..+...-..|.++
T Consensus 48 CLTV~~~~~~~f~vdv~ETl~~T~Lg~l~~G~~VNLEral~~~~r----lgGH~vsGHVdg~g~i~~i~~~~~~~~~~i~ 123 (186)
T 3ddy_A 48 SNTVVRILGDMVYFDIDQALGTTTFDGLKEGDQVNLEIHPKFGEV----VGRGGLTGNIKGTALVAAIEENDAGFSVLID 123 (186)
T ss_dssp EEEEEEEETTEEEEEECTTTTTSSGGGCCTTCEEEEECCC-------------CBCSCCCEEEEEEEEECCSSEEEEEEE
T ss_pred EEEEEEEcCCEEEEEhHHhhhhCchhhcCCCCEEEECCCCCCCCc----cCCeeEEEEEeEEEEEEEEEECCCeEEEEEE
Confidence 455677776666665422222223455679999999999999986 56666666 4457788877776666677777
Q ss_pred CCCCceeccCccCCc
Q 027519 182 KKKNYRRNIGHRQPN 196 (222)
Q Consensus 182 RRK~yrRk~GHRQ~~ 196 (222)
--+...|..-.+-..
T Consensus 124 ~p~~l~~~i~~KgSI 138 (186)
T 3ddy_A 124 IPKGLAENLTVKDDI 138 (186)
T ss_dssp CCTTTCSCCCTTCEE
T ss_pred cCHHHhhccccCcEE
Confidence 777777766555543
No 55
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=31.39 E-value=41 Score=25.63 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=17.5
Q ss_pred EEEECC---------EEEEEcCCCEEEEc
Q 027519 106 VVMIGS---------RQYIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigG---------kQYkV~~GD~I~Ve 125 (222)
.+.++| +.|.+.+||.+.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip 101 (163)
T 1lr5_A 73 TLLMGSSSLKYPGQPQEIPFFQNTTFSIP 101 (163)
T ss_dssp EEEECCSSSSSCCSCEEEEECTTEEEEEC
T ss_pred EEEECCccccccCccEEEEeCCCCEEEEC
Confidence 366888 99999999999998
No 56
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.05 E-value=13 Score=32.85 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=28.5
Q ss_pred CCeEEEEEECCEEEEEcCCCEEEEcccCCCCCCCeEEEce
Q 027519 101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKIILNK 140 (222)
Q Consensus 101 ~~mYAIVeigGkQYkV~~GD~I~Verlk~~~~Gd~I~l~k 140 (222)
.+.+|+|..+|+.|.|..-..|..+.| ++|+.|.||.
T Consensus 109 dd~~aiV~s~Gr~~~V~Vsp~Vd~e~L---kPG~rVaLNe 145 (251)
T 3m9b_A 109 DDDTVDVFTSGRKMRLTCSPNIDAASL---KKGQTVRLNE 145 (251)
T ss_dssp SSSCEEEECSSSCCEECBCTTSCTTTS---CSSCEEEECT
T ss_pred CCCEEEEEeCCceEEEEeCCCCCHHHC---CCCCEEEeCC
Confidence 356888999999999998876666555 5899887754
No 57
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=29.02 E-value=38 Score=25.74 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=18.0
Q ss_pred EEEEECCEE-EEEcCCCEEEEcc
Q 027519 105 AVVMIGSRQ-YIVFPGRFIYTQR 126 (222)
Q Consensus 105 AIVeigGkQ-YkV~~GD~I~Ver 126 (222)
+.+.++|+. |.+.+||.+.++.
T Consensus 79 ~~~~~~~~~~~~l~~Gd~i~ip~ 101 (147)
T 2f4p_A 79 GFYQERGKPARILKKGDVVEIPP 101 (147)
T ss_dssp EEEEETTSCCEEEETTCEEEECT
T ss_pred EEEEECCEEEEEECCCCEEEECC
Confidence 346688887 9999999999873
No 58
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=28.32 E-value=38 Score=27.74 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=17.9
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ve 125 (222)
-+.++|+.+.+.+||.++++
T Consensus 69 ~~~i~~~~~~l~~Gd~~~~p 88 (227)
T 3rns_A 69 EIFIENNKKTISNGDFLEIT 88 (227)
T ss_dssp EEEESSCEEEEETTEEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 35589999999999999998
No 59
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=27.61 E-value=46 Score=27.66 Aligned_cols=20 Identities=10% Similarity=0.394 Sum_probs=18.4
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ve 125 (222)
.+.++|+.|.+.+||.++++
T Consensus 93 ~~~~~~~~~~L~~Gd~~~~~ 112 (261)
T 1rc6_A 93 TAKAEGKTFALSEGGYLYCP 112 (261)
T ss_dssp EEEETTEEEEEETTEEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 46799999999999999998
No 60
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=27.40 E-value=56 Score=27.49 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.0
Q ss_pred EEECCEEEEEcCCCEEEEcc
Q 027519 107 VMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 107 VeigGkQYkV~~GD~I~Ver 126 (222)
+.++|+.|.+.+||.+.++.
T Consensus 252 ~~i~~~~~~l~~GD~~~ip~ 271 (337)
T 1y3t_A 252 MWTDGQEIQLNPGDFLHVPA 271 (337)
T ss_dssp EEETTEEEEECTTCEEEECT
T ss_pred EEECCEEEEECCCCEEEECC
Confidence 46788999999999999883
No 61
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=26.29 E-value=37 Score=25.61 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.8
Q ss_pred EEEECCEE------EEEcCCCEEEEc
Q 027519 106 VVMIGSRQ------YIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigGkQ------YkV~~GD~I~Ve 125 (222)
.+.++|+. |.+.+||.+.++
T Consensus 76 ~~~i~~~~~~~~~~~~l~~Gd~i~ip 101 (148)
T 2oa2_A 76 LVQMGHRQDNLHFQEEVFDDYAILIP 101 (148)
T ss_dssp EEEEESBTTBCCEEEEEETTCEEEEC
T ss_pred EEEECCccccceeeEEECCCCEEEEC
Confidence 35678887 999999999988
No 62
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=26.20 E-value=45 Score=23.58 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=27.6
Q ss_pred CeEEEEEECCEEEEEcCCCEEEEc--ccCCCCCCCeEEEceEEEEec
Q 027519 102 EIFAVVMIGSRQYIVFPGRFIYTQ--RLKGANVNDKIILNKVLLVGT 146 (222)
Q Consensus 102 ~mYAIVeigGkQYkV~~GD~I~Ve--rlk~~~~Gd~I~l~kVLlvgs 146 (222)
.-.|||+.+|+|-.-..||.|.=- .| ..|..|+|++=.+
T Consensus 19 ~s~AII~~~g~q~~Y~vGd~i~g~~a~l------~~V~~DrVIl~~~ 59 (68)
T 3oss_C 19 RPGAVIEEGGKQQVYLQGERLDSHNAVI------EEINRDHVMLRYQ 59 (68)
T ss_dssp SCEEEEEETTEEEEECTTCBCSSSSEEE------EEECSSEEEEEET
T ss_pred CcEEEEecCCcEeEEECCCEeCCCCEEE------EEEeCCEEEEecC
Confidence 789999999999999999976310 12 2455567766543
No 63
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=24.04 E-value=71 Score=26.86 Aligned_cols=21 Identities=10% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.++++.
T Consensus 79 ~~~~~~~~~~l~~Gd~~~~p~ 99 (337)
T 1y3t_A 79 ELTLDGERYLLISGDYANIPA 99 (337)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 356899999999999999983
No 64
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=23.92 E-value=49 Score=28.24 Aligned_cols=20 Identities=10% Similarity=0.338 Sum_probs=18.2
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ve 125 (222)
.+.++|+.|.+.+||.++++
T Consensus 102 ~v~v~g~~~~L~~GD~i~ip 121 (278)
T 1sq4_A 102 SLTLQGQVHAMQPGGYAFIP 121 (278)
T ss_dssp EEEESSCEEEECTTEEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 46789999999999999998
No 65
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=23.62 E-value=70 Score=27.26 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=18.0
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
++.++|+-|.|.+||++.+.-
T Consensus 224 ~~~~~~~~~~v~~GD~~~~~~ 244 (278)
T 1sq4_A 224 VYRLNQDWVEVEAGDFMWLRA 244 (278)
T ss_dssp EEEETTEEEEEETTCEEEEEE
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 556899999999999999873
No 66
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=23.53 E-value=46 Score=27.69 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.9
Q ss_pred EEEECCEEEEEcCCCEEEEcc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQR 126 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ver 126 (222)
.+.++|+.|.+.+||.++++.
T Consensus 80 ~~~~~~~~~~l~~Gd~~~~p~ 100 (246)
T 1sfn_A 80 DVAVGGETRTLREYDYVYLPA 100 (246)
T ss_dssp EEECSSCEEEECTTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 577999999999999999983
No 67
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=22.30 E-value=1.4e+02 Score=25.12 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=34.6
Q ss_pred CeEEEEEECCEEEEEcCCCEEEEc--ccCCCCCCCeEEEceEEEEecCCceEec
Q 027519 102 EIFAVVMIGSRQYIVFPGRFIYTQ--RLKGANVNDKIILNKVLLVGTKTTTYIG 153 (222)
Q Consensus 102 ~mYAIVeigGkQYkV~~GD~I~Ve--rlk~~~~Gd~I~l~kVLlvgs~~~t~iG 153 (222)
+-|+|++++|--|.|. +. .+...+.|+.+.|.--+.+..+...+.|
T Consensus 30 ~~~~Vi~v~gVGy~v~------v~~~t~~~l~~Ge~v~l~t~~~vRED~~~LyG 77 (212)
T 2ztd_A 30 LDHVVIEAAGVGYRVN------ATPATLATLRQGTEARLITAMIVREDSMTLYG 77 (212)
T ss_dssp SSEEEEEETTEEEEEE------CCHHHHTTCCTTSEEEEEEEEEEETTEEEEEE
T ss_pred CCEEEEEECCeeEEEE------EChHhHHhcCCCCEEEEEEEEEEecCCcceEe
Confidence 5799999999767554 43 2444568999999988888777777777
No 68
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=22.17 E-value=49 Score=27.82 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=18.2
Q ss_pred EEEECCEEEEEcCCCEEEEc
Q 027519 106 VVMIGSRQYIVFPGRFIYTQ 125 (222)
Q Consensus 106 IVeigGkQYkV~~GD~I~Ve 125 (222)
.+.++|+.|.+.+||.++++
T Consensus 96 ~~~~~~~~~~L~~GD~~~~~ 115 (274)
T 1sef_A 96 RVSDGQETHELEAGGYAYFT 115 (274)
T ss_dssp EEECSSCEEEEETTEEEEEC
T ss_pred EEEECCEEEEECCCCEEEEC
Confidence 46789999999999999998
No 69
>3bs1_A Accessory gene regulator protein A; lyttr, AGRA, response regulator, DNA binding domain; HET: DNA BRU; 1.60A {Staphylococcus aureus}
Probab=21.70 E-value=1.1e+02 Score=21.52 Aligned_cols=26 Identities=12% Similarity=-0.007 Sum_probs=22.7
Q ss_pred CeEEEEEECCEEEEEcCCCEEEEccc
Q 027519 102 EIFAVVMIGSRQYIVFPGRFIYTQRL 127 (222)
Q Consensus 102 ~mYAIVeigGkQYkV~~GD~I~Verl 127 (222)
+-+..|..+++.++|...|+++++..
T Consensus 5 ~~~i~i~~~~~~~~i~~~dI~yie~~ 30 (103)
T 3bs1_A 5 VETIELKRGSNSVYVQYDDIMFFESS 30 (103)
T ss_dssp SCEEEEEETTEEEEEEGGGEEEEEEC
T ss_pred CCEEEEEECCEEEEEehHHEEEEEec
Confidence 45678899999999999999999865
No 70
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=20.87 E-value=37 Score=27.77 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=13.5
Q ss_pred ECCEEEE--EcCCCEEEEc
Q 027519 109 IGSRQYI--VFPGRFIYTQ 125 (222)
Q Consensus 109 igGkQYk--V~~GD~I~Ve 125 (222)
.+|+.|. |++||+|.|+
T Consensus 117 ~~d~~~~~~l~~GDli~IP 135 (179)
T 1zrr_A 117 IGDEVFQVLCEKNDLISVP 135 (179)
T ss_dssp CSSCEEEEECCCSCEEEEC
T ss_pred eCCEEEEEEECCCCEEEEC
Confidence 3677655 8999999998
No 71
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=20.47 E-value=1.1e+02 Score=26.95 Aligned_cols=31 Identities=3% Similarity=0.020 Sum_probs=23.5
Q ss_pred EECCEEEEE---cCCCEEEEcccCCCCCCCeEEE
Q 027519 108 MIGSRQYIV---FPGRFIYTQRLKGANVNDKIIL 138 (222)
Q Consensus 108 eigGkQYkV---~~GD~I~Verlk~~~~Gd~I~l 138 (222)
.++|+++.| -..|.+.++.+.++++||.|.|
T Consensus 305 ~v~g~~~~ivG~vcmD~~~vd~~~~~~~GD~v~l 338 (391)
T 2vd8_A 305 LVNGXRVPIVGRVTMDQFMIHLPCEVPLGTXVTL 338 (391)
T ss_dssp EETTEEEEEESCCCSSCEEEEESSCCCTTCEEEE
T ss_pred EECCeecceecceecceeEeecCCCCCCCCEEEE
Confidence 347888877 4678888888767889997754
Done!