BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027520
         (222 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By
           Lipoate-protein Ligase B
          Length = 237

 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 113/185 (61%), Gaps = 4/185 (2%)

Query: 12  LGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLG 71
           LG+V Y +A   Q+++  +        TLL L+HP   TLG++ T  NLL  E+  ++ G
Sbjct: 28  LGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENG 87

Query: 72  AELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPG 131
            EL++ +RGGD+T+HGP Q + YPI     +G   R ++ ++E  ++ +A+ YG+ A P 
Sbjct: 88  FELYWVERGGDVTYHGPGQLVGYPIFP---VGREVRRFLRQIEEAIVRVAAGYGISAYP- 143

Query: 132 QKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRE 191
             G  G+WVG+ K+ AIGV ++ G++ HG A N++ DLN F  IVPCG+  K VTSL + 
Sbjct: 144 TPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKL 203

Query: 192 TGNGI 196
            G  +
Sbjct: 204 LGRKV 208


>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By
           Lipoate-Protein Ligase B
 pdb|2QHU|A Chain A, Structural Basis Of Octanoic Acid Recognition By
           Lipoate-Protein Ligase B
 pdb|2QHV|A Chain A, Structural Basis Of Octanoic Acid Recognition By
           Lipoate-protein Ligase B
          Length = 210

 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 113/185 (61%), Gaps = 4/185 (2%)

Query: 12  LGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLG 71
           LG+V Y +A   Q+++  +        TLL L+HP   TLG++ T  NLL  E+  ++ G
Sbjct: 8   LGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENG 67

Query: 72  AELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPG 131
            EL++ +RGGD+T+HGP Q + YPI     +G   R ++ ++E  ++ +A+ YG+ A P 
Sbjct: 68  FELYWVERGGDVTYHGPGQLVGYPIFP---VGREVRRFLRQIEEAIVRVAAGYGISAYP- 123

Query: 132 QKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRE 191
             G  G+WVG+ K+ AIGV ++ G++ HG A N++ DLN F  IVPCG+  K VTSL + 
Sbjct: 124 TPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKL 183

Query: 192 TGNGI 196
            G  +
Sbjct: 184 LGRKV 188


>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium
           Tuberculosis
          Length = 232

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 112/195 (57%), Gaps = 15/195 (7%)

Query: 6   SLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEA 65
           ++ + +LG V+Y  A +LQ +L +D ++   +DTLL L+HP  YT G+R   H   I   
Sbjct: 13  AIDVRQLGTVDYRTAWQLQREL-ADARVAGGADTLLLLEHPAVYTAGRRTETHERPID-- 69

Query: 66  ELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYG 125
                G  +  T RGG IT+HGP Q + YPII L +  L   NYV +LE ++I++ +  G
Sbjct: 70  -----GTPVVDTDRGGKITWHGPGQLVGYPIIGLAEP-LDVVNYVRRLEESLIQVCADLG 123

Query: 126 VKACPGQ-KGETGIWVGDR---KIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIA 181
           + A  G+  G +G+W+  R   K+ AIGVR+    T HG A N D DL  F  IVPCGI+
Sbjct: 124 LHA--GRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGIS 181

Query: 182 DKDVTSLRRETGNGI 196
           D  VTSL  E G  +
Sbjct: 182 DAAVTSLSAELGRTV 196


>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
           (Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
           2.30 A Resolution
          Length = 248

 Score = 27.7 bits (60), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 20/100 (20%)

Query: 55  RTDHNLLISEAELKKLGAELHY---TQRGGDITFHGPHQAILYPIISLRDIGLGARNYVE 111
           R D + ++  AEL K G   H+   + RG D        + LY         L  +  VE
Sbjct: 112 RVDRDYVLKSAELAKAGGCKHFNLLSSRGAD-----KSSSFLY---------LQVKGEVE 157

Query: 112 -KLESTMIEIASLY--GVKACPGQKGETGIWVGDRKIGAI 148
            K+E    +  S++  GV  C  Q+   G W+  +  G++
Sbjct: 158 AKVEELKFDRLSVFRPGVLLCDRQESRPGEWLARKFFGSL 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,766,213
Number of Sequences: 62578
Number of extensions: 275395
Number of successful extensions: 586
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 577
Number of HSP's gapped (non-prelim): 4
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)