Query 027521
Match_columns 222
No_of_seqs 157 out of 686
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 11:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00236 mitochondrial import 100.0 3.4E-43 7.3E-48 294.5 12.8 142 4-145 4-145 (164)
2 TIGR00980 3a0801so1tim17 mitoc 100.0 6.9E-42 1.5E-46 288.2 17.5 139 4-142 2-140 (170)
3 KOG1652 Mitochondrial import i 100.0 7.4E-41 1.6E-45 282.2 5.7 144 3-146 1-144 (183)
4 TIGR00983 3a0801s02tim23 mitoc 100.0 4E-29 8.7E-34 206.9 12.2 119 7-125 26-148 (149)
5 PF02466 Tim17: Tim17/Tim22/Ti 99.9 3.8E-24 8.2E-29 169.4 12.5 120 10-129 1-124 (128)
6 KOG3324 Mitochondrial import i 99.8 4.3E-21 9.3E-26 164.5 8.9 122 6-127 68-193 (206)
7 KOG3225 Mitochondrial import i 99.7 2.8E-18 6.1E-23 143.0 4.2 119 10-139 41-166 (168)
8 COG5596 TIM22 Mitochondrial im 99.5 6.4E-15 1.4E-19 125.7 -1.1 126 1-127 21-184 (191)
9 KOG4608 Uncharacterized conser 97.9 1.7E-06 3.6E-11 77.2 -0.9 88 55-142 127-214 (270)
10 COG5596 TIM22 Mitochondrial im 97.8 2.7E-06 5.8E-11 73.2 -1.8 100 37-136 49-163 (191)
11 PF02466 Tim17: Tim17/Tim22/Ti 95.4 0.22 4.7E-06 39.1 9.9 120 17-136 4-127 (128)
12 KOG4096 Uncharacterized conser 95.1 0.02 4.4E-07 42.6 2.9 71 6-79 2-72 (75)
13 PF10247 Romo1: Reactive mitoc 93.8 0.081 1.8E-06 38.9 3.5 63 10-76 2-65 (67)
14 KOG1398 Uncharacterized conser 83.0 1.7 3.7E-05 42.0 4.3 46 61-106 301-346 (460)
15 TIGR00980 3a0801so1tim17 mitoc 65.9 86 0.0019 26.9 10.1 122 17-139 11-133 (170)
16 KOG1398 Uncharacterized conser 64.0 21 0.00046 34.7 6.5 100 5-104 21-123 (460)
17 KOG1924 RhoA GTPase effector D 58.6 20 0.00044 37.8 5.6 9 73-81 425-433 (1102)
18 TIGR00983 3a0801s02tim23 mitoc 50.8 1.1E+02 0.0024 25.4 8.0 116 12-127 26-146 (149)
19 PF12732 YtxH: YtxH-like prote 49.0 16 0.00034 26.4 2.3 23 23-45 1-23 (74)
20 PRK09586 murP PTS system N-ace 42.9 3.4E+02 0.0074 26.7 11.1 26 103-128 386-411 (476)
21 PF10439 Bacteriocin_IIc: Bact 30.9 1.6E+02 0.0034 20.9 5.1 32 78-109 11-45 (65)
22 PF13436 Gly-zipper_OmpA: Glyc 29.3 1.1E+02 0.0025 24.2 4.6 36 87-122 50-87 (118)
23 COG4980 GvpP Gas vesicle prote 27.6 59 0.0013 26.3 2.7 25 21-45 5-29 (115)
24 PF12597 DUF3767: Protein of u 25.4 1.3E+02 0.0029 24.0 4.4 21 22-42 43-63 (118)
25 PF13488 Gly-zipper_Omp: Glyci 25.2 2E+02 0.0043 19.3 4.6 15 94-108 4-18 (46)
26 PRK09824 PTS system beta-gluco 24.2 7.9E+02 0.017 25.2 10.6 95 23-128 289-400 (627)
27 KOG0768 Mitochondrial carrier 22.3 2.4E+02 0.0052 26.7 6.0 28 112-143 291-318 (323)
28 PTZ00236 mitochondrial import 21.5 4.3E+02 0.0092 22.6 6.9 12 24-35 28-39 (164)
29 KOG4096 Uncharacterized conser 21.0 1.3E+02 0.0028 22.6 3.2 63 16-84 8-70 (75)
30 PF05957 DUF883: Bacterial pro 20.8 1.3E+02 0.0028 22.4 3.3 29 75-105 61-89 (94)
31 COG3619 Predicted membrane pro 20.3 5.1E+02 0.011 23.1 7.4 52 68-119 145-207 (226)
32 COG2979 Uncharacterized protei 20.2 3.3E+02 0.0072 24.5 6.1 53 86-139 31-83 (225)
No 1
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=100.00 E-value=3.4e-43 Score=294.54 Aligned_cols=142 Identities=55% Similarity=1.004 Sum_probs=138.0
Q ss_pred CCCCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHh
Q 027521 4 PETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYL 83 (222)
Q Consensus 4 ~~~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~ 83 (222)
-||+|||||+||+||+|++|.+|+++|++|+|++|+||+|.++|+++.++.+++++|+++++||+||++|+++||+++++
T Consensus 4 ~~~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~ 83 (164)
T PTZ00236 4 RDLSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYL 83 (164)
T ss_pred hhhCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 027521 84 RQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPM 145 (222)
Q Consensus 84 R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~~~~~~~~~~ 145 (222)
|+|||+||+++|||+||++|++|.|++++++++++||+++++||+++++++|++++.+.+++
T Consensus 84 R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~~~~~~~~ 145 (164)
T PTZ00236 84 RGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQMRTPRQQF 145 (164)
T ss_pred HccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999998776654
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=100.00 E-value=6.9e-42 Score=288.21 Aligned_cols=139 Identities=53% Similarity=0.972 Sum_probs=135.6
Q ss_pred CCCCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHh
Q 027521 4 PETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYL 83 (222)
Q Consensus 4 ~~~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~ 83 (222)
-||+|||||+|++|++|.+|.+|+++|++||+++|++|+|.++|++++++.+++++++++++||+||++|+++||+++++
T Consensus 2 ~~~~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~ 81 (170)
T TIGR00980 2 EEYTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAI 81 (170)
T ss_pred cccccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 027521 84 RQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQN 142 (222)
Q Consensus 84 R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~~~~~~~ 142 (222)
|+|||+||+++|||+||++|++|.|+++++++++++++++++||+++|+++|+++++.+
T Consensus 82 R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~~~~~~~~ 140 (170)
T TIGR00980 82 RKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTRWAAAQMD 140 (170)
T ss_pred hcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999987664
No 3
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-41 Score=282.20 Aligned_cols=144 Identities=58% Similarity=1.007 Sum_probs=139.3
Q ss_pred CCCCCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHH
Q 027521 3 TPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVY 82 (222)
Q Consensus 3 ~~~~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~ 82 (222)
+.||+|||||+||++|+|++|.||++.|.+|++++|++|+|.|.|+.+.++.+++++|+.|++||+||++||.+||++++
T Consensus 1 ~~e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~ 80 (183)
T KOG1652|consen 1 MMEYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVA 80 (183)
T ss_pred CCcccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcccccccchhhhhccCcccccceeeeechhhHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 027521 83 LRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPMM 146 (222)
Q Consensus 83 ~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~~~~~~~~~~~ 146 (222)
+|+|||+||+|++||+||++|+.|.|+++|+.||+++|++++++|+++++++|+.+...++..+
T Consensus 81 ~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g~~~t~~~a~~~~~~~~ 144 (183)
T KOG1652|consen 81 IRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLGIQVTKIAASQFRNQQP 144 (183)
T ss_pred HhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999999887766544
No 4
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.96 E-value=4e-29 Score=206.88 Aligned_cols=119 Identities=22% Similarity=0.283 Sum_probs=113.5
Q ss_pred CCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCC----CCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHH
Q 027521 7 SREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPS----GARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVY 82 (222)
Q Consensus 7 ~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~----g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~ 82 (222)
++|.|.|++++.+|.+|++|+++|+++|+++|++++|. +.|++.++|.++++++++|++||+|+++|+++||.+++
T Consensus 26 ~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~ 105 (149)
T TIGR00983 26 PSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEA 105 (149)
T ss_pred CCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999874 45889999999999999999999999999999999999
Q ss_pred hhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 027521 83 LRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLAL 125 (222)
Q Consensus 83 ~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~al 125 (222)
+|+|||+||+++||++||++|++++|+|+++.++++|++++++
T Consensus 106 ~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 106 TRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGV 148 (149)
T ss_pred HhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhc
Confidence 9999999999999999999999999999999999999888764
No 5
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.91 E-value=3.8e-24 Score=169.43 Aligned_cols=120 Identities=40% Similarity=0.663 Sum_probs=110.6
Q ss_pred CCchhHHhhhhhHHHHHHHHHHHHHHHHhh----ccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHhhc
Q 027521 10 PCPDRILDDVGGAFGMGAVGGAAFHFLKGT----YNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQ 85 (222)
Q Consensus 10 pcp~ri~d~~G~af~mG~v~G~~~g~~~G~----~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~R~ 85 (222)
+|++|++++++.+|.+|++.|++.+++++. ++.|.+++++.+++.+++++++.+.+||.++++|+++||.++++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 699999999999999999999999998664 3445556788999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHH
Q 027521 86 KEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGA 129 (222)
Q Consensus 86 KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliega 129 (222)
|||+||+++||++||++++++.|++.++.++++++++.++++..
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~ 124 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYY 124 (128)
T ss_pred ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998854
No 6
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.3e-21 Score=164.49 Aligned_cols=122 Identities=24% Similarity=0.274 Sum_probs=115.2
Q ss_pred CCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCC----CCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHH
Q 027521 6 TSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPS----GARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMV 81 (222)
Q Consensus 6 ~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~----g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~ 81 (222)
-+|+.|.|.+++.+|.+|+.|++.|++.|++.|++|.+. +.|++.++|.++++++..|++.++++.+|+.+|..++
T Consensus 68 ~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~ 147 (206)
T KOG3324|consen 68 IKRRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIE 147 (206)
T ss_pred ccccchhhhhheeccchhccchhhhhHHHHHHhhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999764 4588999999999999999999999999999999999
Q ss_pred HhhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 027521 82 YLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIE 127 (222)
Q Consensus 82 ~~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~alie 127 (222)
+.|+|||+||+++||++||++|++.+|+|++++++++++.+.++.-
T Consensus 148 ~~R~~dd~lnsv~AGalTGalyrs~~Glr~~av~ga~g~~aa~aw~ 193 (206)
T KOG3324|consen 148 ATRGKDDDLNSVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAAWT 193 (206)
T ss_pred HhhccccchhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988887765
No 7
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.8e-18 Score=143.02 Aligned_cols=119 Identities=25% Similarity=0.382 Sum_probs=93.1
Q ss_pred CCchhHHhhhhhHHHHHHHHHHHHHHHHhhcc----CCCCCcc---ccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHH
Q 027521 10 PCPDRILDDVGGAFGMGAVGGAAFHFLKGTYN----SPSGARL---SGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVY 82 (222)
Q Consensus 10 pcp~ri~d~~G~af~mG~v~G~~~g~~~G~~n----sP~g~rl---~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~ 82 (222)
.|..|.+-+ -++|..+|.++|+|.+.++ .|+-.|+ .+.+..+-++....+++|+++|++|+++||++++
T Consensus 41 ~c~~Ka~~s----gV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~ 116 (168)
T KOG3225|consen 41 SCAVKAVKS----GVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIES 116 (168)
T ss_pred chhHHHHHh----hccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHH
Confidence 455555553 3567777888888888765 3422222 2333344456667799999999999999999999
Q ss_pred hhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027521 83 LRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSA 139 (222)
Q Consensus 83 ~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~~~~ 139 (222)
+|.|+||+|.+++||+||+.++.|+||++ +++||++|++++ ..+.|++..
T Consensus 117 ~RAK~D~~NgaiaG~vtGg~l~~raGp~a----~~~G~agfa~fS---~~id~y~~~ 166 (168)
T KOG3225|consen 117 FRAKSDWYNGAIAGCVTGGSLGYRAGPKA----AAIGCAGFAAFS---AAIDKYMRG 166 (168)
T ss_pred HHhhhchhcceeeeeeeccchhhcccchh----hhhchhHHHHHH---HHHHHhhhc
Confidence 99999999999999999999999999998 788998888887 457777754
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.4e-15 Score=125.67 Aligned_cols=126 Identities=27% Similarity=0.322 Sum_probs=101.7
Q ss_pred CCCCCCCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCCCC----------------------------------
Q 027521 1 MGTPETSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGA---------------------------------- 46 (222)
Q Consensus 1 ~~~~~~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~---------------------------------- 46 (222)
|-||| .|.+|+..++.+.+.+|-++++.+.+++-++|+++.+..+
T Consensus 21 ~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~ 99 (191)
T COG5596 21 ILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCT 99 (191)
T ss_pred ccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccc
Confidence 34778 8999999999999999999999999999999998753110
Q ss_pred ----ccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 027521 47 ----RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVL 122 (222)
Q Consensus 47 ----rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~ 122 (222)
|++..++-+.++++.+|++|+++|+.|...||+++.+|+|+|+.|++.+|+.||+.|+.+.|+|+|..+...-+++
T Consensus 100 ~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~ 179 (191)
T COG5596 100 PFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAF 179 (191)
T ss_pred hHHHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhh
Confidence 1122223344567888999999999999999999999999999999999999999999999999965554444444
Q ss_pred HHHHH
Q 027521 123 LALIE 127 (222)
Q Consensus 123 ~alie 127 (222)
.+.++
T Consensus 180 s~~~~ 184 (191)
T COG5596 180 SAGIT 184 (191)
T ss_pred hhhHH
Confidence 44443
No 9
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=1.7e-06 Score=77.17 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=73.9
Q ss_pred HhhcchhhhhHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027521 55 VRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLN 134 (222)
Q Consensus 55 vr~~gp~~G~sFA~~G~lfs~~ec~l~~~R~KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~ 134 (222)
+.+.+-+.|-..|++...|-++...+..+|+|+|.||.++||++||+++++.-|++.+++..++|+++.+...+....+.
T Consensus 127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa~vilG~~lG~tv~~~l~l~q 206 (270)
T KOG4608|consen 127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAAGVILGALLGTTVGGLLMLFQ 206 (270)
T ss_pred HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhhcceeehhhcchHHHHHHHHH
Confidence 33455556677789999999999999999999999999999999999999999999988888998888888877777777
Q ss_pred hhhcCCCC
Q 027521 135 KVLSAPQN 142 (222)
Q Consensus 135 r~~~~~~~ 142 (222)
+....+-|
T Consensus 207 ~a~~k~vn 214 (270)
T KOG4608|consen 207 KASGKTVN 214 (270)
T ss_pred HHhCCcHH
Confidence 66655433
No 10
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2.7e-06 Score=73.18 Aligned_cols=100 Identities=30% Similarity=0.317 Sum_probs=73.8
Q ss_pred HhhccCCCCCccccHHH----HH---hhcchhhhhHHH-HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhccC
Q 027521 37 KGTYNSPSGARLSGGTQ----AV---RMNAPRVGGSFA-VWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQG 108 (222)
Q Consensus 37 ~G~~nsP~g~rl~g~l~----av---r~~gp~~G~sFA-~~G~lfs~~ec~l~~~R~KdD~~NsiiAG~~TGall~~r~G 108 (222)
+..+.+.+|-++-...+ .+ +...+..+.+|+ +||++++.++|+..++|.|+|.||....|++||..++.+..
T Consensus 49 k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl 128 (191)
T COG5596 49 KSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGL 128 (191)
T ss_pred hhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhccccccccccccccccceeee
Confidence 44455566655533222 22 235666799998 99999999999999999999999999999999999999988
Q ss_pred chHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 027521 109 LGSASRSALF-------GGVLLALIEGAGIMLNKV 136 (222)
Q Consensus 109 ~ka~~~sAl~-------Gg~~~aliegag~~~~r~ 136 (222)
+.+-.-|.|. ..-..++.++.|.++.+.
T Consensus 129 ~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~ 163 (191)
T COG5596 129 IYAGINSIITALRAKHDIANAIAAGAFTGAALASS 163 (191)
T ss_pred ecccchhhhhhhhhccccchhhhhhhhhhHHHHhh
Confidence 8776666766 233445555666666655
No 11
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=95.43 E-value=0.22 Score=39.12 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=88.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhccC-CCCCcccc---HHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 027521 17 DDVGGAFGMGAVGGAAFHFLKGTYNS-PSGARLSG---GTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNS 92 (222)
Q Consensus 17 d~~G~af~mG~v~G~~~g~~~G~~ns-P~g~rl~g---~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~R~KdD~~Ns 92 (222)
+++-.....|.+.|.++|.+.+.+.. +...+... -++.+-+...+.+..++..-+.|.++-+.++.+=++-=--|.
T Consensus 4 ~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~D 83 (128)
T PF02466_consen 4 ERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKDD 83 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 55667788899999999999998865 32222222 222222333333556888888888888888877665335689
Q ss_pred HHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027521 93 IIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKV 136 (222)
Q Consensus 93 iiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~ 136 (222)
.+-.+++|++-+.--+.+.-.+..+.++++++++..+-..++|+
T Consensus 84 ~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~ 127 (128)
T PF02466_consen 84 PWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGRM 127 (128)
T ss_pred cchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998888888999999999999988776666554
No 12
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.02 Score=42.65 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=48.7
Q ss_pred CCCCCCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHH
Q 027521 6 TSREPCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCT 79 (222)
Q Consensus 6 ~~repcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~ 79 (222)
+++.+|.+|+..-.-.+...|...|.+||-+.++|.-|.++ +.++.+.+..-..+++|+.+=++=+.++|.
T Consensus 2 q~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~---~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 2 QQQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGR---GLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred CCCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChh---HHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 36779999998866666666666777777777777766554 334555555555578888777776766664
No 13
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=93.78 E-value=0.081 Score=38.87 Aligned_cols=63 Identities=30% Similarity=0.401 Sum_probs=35.5
Q ss_pred CCchhHHhhhhhHHHHHHHHHHHHHHHHhhccCCC-CCccccHHHHHhhcchhhhhHHHHHHHHHHHH
Q 027521 10 PCPDRILDDVGGAFGMGAVGGAAFHFLKGTYNSPS-GARLSGGTQAVRMNAPRVGGSFAVWGGLFSTF 76 (222)
Q Consensus 10 pcp~ri~d~~G~af~mG~v~G~~~g~~~G~~nsP~-g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ 76 (222)
+|.+|+.. ++.||...|.+.|++.|.++.-+ +.|-+..++.+.+..-..+.+|+.+=++=+.+
T Consensus 2 sc~~kikm----G~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~I 65 (67)
T PF10247_consen 2 SCFDKIKM----GFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVI 65 (67)
T ss_pred cHHHHHHH----HHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccc
Confidence 57777655 66666666666666655554321 23334555666665555567776654443333
No 14
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.03 E-value=1.7 Score=41.98 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHhhhc
Q 027521 61 RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMR 106 (222)
Q Consensus 61 ~~G~sFA~~G~lfs~~ec~l~~~R~KdD~~NsiiAG~~TGall~~r 106 (222)
+++.-.+.+-++|.++.|++.+++-+||..|+++||.+++..+..-
T Consensus 301 qlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmfy 346 (460)
T KOG1398|consen 301 QLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMFY 346 (460)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeeec
Confidence 3455668889999999999999999999999999999998665553
No 15
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=65.93 E-value=86 Score=26.87 Aligned_cols=122 Identities=11% Similarity=-0.047 Sum_probs=79.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhccCCCCCcc-ccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 027521 17 DDVGGAFGMGAVGGAAFHFLKGTYNSPSGARL-SGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIA 95 (222)
Q Consensus 17 d~~G~af~mG~v~G~~~g~~~G~~nsP~g~rl-~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~R~KdD~~NsiiA 95 (222)
+.+-..+..+...|.++|.+.++....++... ......++.-..+ +..++---+++..+-+.++..=.+----|-.+-
T Consensus 11 ~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~r-ap~~g~~Fav~g~lys~~ec~i~~~R~KeD~~N 89 (170)
T TIGR00980 11 YRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTR-APVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWN 89 (170)
T ss_pred chhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 44566788899999999998888875543311 1111112222222 444555556666667777766665556688888
Q ss_pred HHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027521 96 GAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSA 139 (222)
Q Consensus 96 G~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~~~~ 139 (222)
..++|++-+.--+.+.-.+.++.++++++++-++-=-+.-.+..
T Consensus 90 siiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~ 133 (170)
T TIGR00980 90 SIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTR 133 (170)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777777788888888888887554444444433
No 16
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.95 E-value=21 Score=34.66 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=60.4
Q ss_pred CCCCCCCchhHHhhhhhHHHHHHHHH-HHHHHHHhhccCCC--CCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHH
Q 027521 5 ETSREPCPDRILDDVGGAFGMGAVGG-AAFHFLKGTYNSPS--GARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMV 81 (222)
Q Consensus 5 ~~~repcp~ri~d~~G~af~mG~v~G-~~~g~~~G~~nsP~--g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~ 81 (222)
++..-+|-+.-..++-.++..+...- .++-++.++.+... ...+.--+..++...-+.+.-+..-.+.|-.+.|.+.
T Consensus 21 ~e~~h~w~~~c~ga~~~~ll~~~~~~l~~y~~~ya~~l~~~~r~~s~~d~~~k~~~~~cqs~lflvtn~~~f~al~C~lR 100 (460)
T KOG1398|consen 21 DEADHSWVANCIGALCQSLLLSYGVRLGIYILLYAFKLARGQRYSSLLDLDLKVREEACQSGLFLVTNTGSFHALRCCLR 100 (460)
T ss_pred hhccCCcccchhHHHHHHHHhhcceehhhHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhceeeeechHHHHHHHHHHH
Confidence 44555666555555444555443211 11222233333221 1111222445565666666666777888999999999
Q ss_pred HhhccCChhHHHHHHHHHHHHhh
Q 027521 82 YLRQKEDPWNSIIAGAATGGFLS 104 (222)
Q Consensus 82 ~~R~KdD~~NsiiAG~~TGall~ 104 (222)
++++|.-+||..+++++.+...+
T Consensus 101 kwlgkftp~t~glv~s~las~ia 123 (460)
T KOG1398|consen 101 KWLGKFTPLTSGLVGSVLASSIA 123 (460)
T ss_pred HHhcccCcccHHHHHHHHhhhhh
Confidence 99999999999999998885544
No 17
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=58.56 E-value=20 Score=37.79 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 027521 73 FSTFDCTMV 81 (222)
Q Consensus 73 fs~~ec~l~ 81 (222)
|..+|-.++
T Consensus 425 ykLIEecIS 433 (1102)
T KOG1924|consen 425 YKLIEECIS 433 (1102)
T ss_pred HHHHHHHHH
Confidence 444443333
No 18
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=50.77 E-value=1.1e+02 Score=25.43 Aligned_cols=116 Identities=14% Similarity=0.022 Sum_probs=69.4
Q ss_pred chhHHhh-hhhHHHHHHHHHHHHHHHHhhccCCCCCcccc----HHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 027521 12 PDRILDD-VGGAFGMGAVGGAAFHFLKGTYNSPSGARLSG----GTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQK 86 (222)
Q Consensus 12 p~ri~d~-~G~af~mG~v~G~~~g~~~G~~nsP~g~rl~g----~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~R~K 86 (222)
+.|.+.+ +=-...+..+.|.+.|.+.|+++.-+..+... -++.+-+...+.+-.++---++...+-+.++..=.+
T Consensus 26 ~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~ 105 (149)
T TIGR00983 26 PSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEA 105 (149)
T ss_pred CCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544 32334566889999999999988665443221 122333334444666777777777777777766553
Q ss_pred CChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 027521 87 EDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIE 127 (222)
Q Consensus 87 dD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~alie 127 (222)
-=-.+-.+-..++|++-+.--..++=.+.+++++++.+++.
T Consensus 106 ~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~ 146 (149)
T TIGR00983 106 TRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAA 146 (149)
T ss_pred HhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHh
Confidence 22235566666667666655555555566666666655543
No 19
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=49.01 E-value=16 Score=26.43 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC
Q 027521 23 FGMGAVGGAAFHFLKGTYNSPSG 45 (222)
Q Consensus 23 f~mG~v~G~~~g~~~G~~nsP~g 45 (222)
|+.|++.|++.|...|+..+|+.
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~s 23 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKS 23 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC
Confidence 56788888888888888888854
No 20
>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Probab=42.93 E-value=3.4e+02 Score=26.74 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=15.6
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHH
Q 027521 103 LSMRQGLGSASRSALFGGVLLALIEG 128 (222)
Q Consensus 103 l~~r~G~ka~~~sAl~Gg~~~alieg 128 (222)
|+..--.|....++++|+++.+++.+
T Consensus 386 YGV~L~~kkpfi~a~iGg~iGG~~~g 411 (476)
T PRK09586 386 YGVTLPRMKPFVTACLGGAAGGFFIG 411 (476)
T ss_pred heeehhhhHHHHHHHHHHHHHHHHHH
Confidence 33333345556777777777777654
No 21
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=30.85 E-value=1.6e+02 Score=20.90 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=21.6
Q ss_pred HHHHHhhcc---CChhHHHHHHHHHHHHhhhccCc
Q 027521 78 CTMVYLRQK---EDPWNSIIAGAATGGFLSMRQGL 109 (222)
Q Consensus 78 c~l~~~R~K---dD~~NsiiAG~~TGall~~r~G~ 109 (222)
.-|+++-+= .+-|..++.++++|++.+...|+
T Consensus 11 eeL~~I~GG~~~~~~~~~~~~~~~~G~~~G~~~g~ 45 (65)
T PF10439_consen 11 EELSSIEGGNSWGNCVGGVGGGAAGGAAAGAAGGP 45 (65)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHhhhccc
Confidence 334444443 45667778888888888888776
No 22
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=29.26 E-value=1.1e+02 Score=24.19 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHHHHhhhccCc--hHHHHHHHHHHHH
Q 027521 87 EDPWNSIIAGAATGGFLSMRQGL--GSASRSALFGGVL 122 (222)
Q Consensus 87 dD~~NsiiAG~~TGall~~r~G~--ka~~~sAl~Gg~~ 122 (222)
++.....+.|++.|++++.-.|- +.++..+++|+++
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga~~ 87 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGAAV 87 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHH
Confidence 34445556667777777765443 4434444444444
No 23
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=27.60 E-value=59 Score=26.27 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCC
Q 027521 21 GAFGMGAVGGAAFHFLKGTYNSPSG 45 (222)
Q Consensus 21 ~af~mG~v~G~~~g~~~G~~nsP~g 45 (222)
..|+.|+..|++.|+..++.-+|+.
T Consensus 5 ~~~l~G~liGgiiGa~aaLL~AP~s 29 (115)
T COG4980 5 KDFLFGILIGGIIGAAAALLFAPKS 29 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4688999999999999999999964
No 24
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=25.42 E-value=1.3e+02 Score=24.02 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q 027521 22 AFGMGAVGGAAFHFLKGTYNS 42 (222)
Q Consensus 22 af~mG~v~G~~~g~~~G~~ns 42 (222)
+++.|..+|.+.|++.-+..+
T Consensus 43 slL~Gi~~G~~vG~~~fl~~~ 63 (118)
T PF12597_consen 43 SLLYGIAGGFGVGGLRFLFTS 63 (118)
T ss_pred HHHHHHHHHHHHHhhhhcccC
Confidence 567788888888888887765
No 25
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=25.25 E-value=2e+02 Score=19.32 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhhccC
Q 027521 94 IAGAATGGFLSMRQG 108 (222)
Q Consensus 94 iAG~~TGall~~r~G 108 (222)
.-|++.|++++...+
T Consensus 4 ~iGA~~Ga~iG~~~g 18 (46)
T PF13488_consen 4 AIGAAAGAAIGAATG 18 (46)
T ss_pred HHHHHHHHHHHHHhC
Confidence 346666777666544
No 26
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=24.15 E-value=7.9e+02 Score=25.19 Aligned_cols=95 Identities=17% Similarity=0.091 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHH--HhhccCCCCCccccHHHHHhhcch------hhhhHHHHHHHHHHHHHHHHHHhhccCChhHH-H
Q 027521 23 FGMGAVGGAAFHFL--KGTYNSPSGARLSGGTQAVRMNAP------RVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNS-I 93 (222)
Q Consensus 23 f~mG~v~G~~~g~~--~G~~nsP~g~rl~g~l~avr~~gp------~~G~sFA~~G~lfs~~ec~l~~~R~KdD~~Ns-i 93 (222)
...|++.|++|.++ .|+..+..- =.++.+...+. ....++|..|+.++. .+|.||.-.-+ .
T Consensus 289 ~i~g~i~g~~~~~lV~~G~H~~l~p----i~~~~ia~~G~~~l~p~~~~a~~aq~Ga~lav------~lktKnk~~K~~a 358 (627)
T PRK09824 289 AFAGAVMGAFWQVFVIFGLHWGLVP----LMINNLTVLGHDTMLPLLMPAVMAQVGAALGV------FLCTRDAQKKVVA 358 (627)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHH----HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH------HHHHhCHHHHHHH
Confidence 45677778887774 565553210 01122222221 123556666666554 33444333333 3
Q ss_pred HHHHHHHHHhhhc--------cCchHHHHHHHHHHHHHHHHHH
Q 027521 94 IAGAATGGFLSMR--------QGLGSASRSALFGGVLLALIEG 128 (222)
Q Consensus 94 iAG~~TGall~~r--------~G~ka~~~sAl~Gg~~~alieg 128 (222)
++++++ ++++.+ --.|....++++|+++.+++.+
T Consensus 359 ~sa~is-allGITEPaiYGV~L~~kkpfi~~~iggaiGG~~~g 400 (627)
T PRK09824 359 GSAFLA-GLFGITEPAVYGVNLPLKRPFIFGCISGALGAAIIG 400 (627)
T ss_pred HHHHHH-HhcCCCcceeeeeecchhHHHHHHHHHHHHHHHHHH
Confidence 334443 444544 3345666777777777777654
No 27
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion]
Probab=22.34 E-value=2.4e+02 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 027521 112 ASRSALFGGVLLALIEGAGIMLNKVLSAPQNM 143 (222)
Q Consensus 112 ~~~sAl~Gg~~~aliegag~~~~r~~~~~~~~ 143 (222)
+...+..|+++++.+| ..++++....+.
T Consensus 291 v~w~s~gGaif~g~YE----~~~~~l~~~~~~ 318 (323)
T KOG0768|consen 291 VFWISLGGAIFLGAYE----TAKSLLSLEKAK 318 (323)
T ss_pred HHHHccchHHHHhHHH----HHHHHhhhhccc
Confidence 4567888999999999 556666554443
No 28
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=21.55 E-value=4.3e+02 Score=22.55 Aligned_cols=12 Identities=8% Similarity=-0.347 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 027521 24 GMGAVGGAAFHF 35 (222)
Q Consensus 24 ~mG~v~G~~~g~ 35 (222)
+.|.+.+.+-++
T Consensus 28 vgG~~~~~~~G~ 39 (164)
T PTZ00236 28 IGGFIWHFLKGM 39 (164)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 29
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.98 E-value=1.3e+02 Score=22.63 Aligned_cols=63 Identities=22% Similarity=0.198 Sum_probs=32.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhhccCCCCCccccHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHhh
Q 027521 16 LDDVGGAFGMGAVGGAAFHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLR 84 (222)
Q Consensus 16 ~d~~G~af~mG~v~G~~~g~~~G~~nsP~g~rl~g~l~avr~~gp~~G~sFA~~G~lfs~~ec~l~~~R 84 (222)
+|.+-.++.||...|.+.|++.|-+...+ --...+..++..+ ++..-=++.|..|-.+-.-+|
T Consensus 8 ~dKikmG~~mG~avG~a~G~lfGgf~~lR--~g~~g~~~vr~iG----kt~~~SagtFG~FM~igs~Ir 70 (75)
T KOG4096|consen 8 FDKIKMGLMMGGAVGGATGALFGGFAALR--YGPRGRGLVRTIG----KTMLQSAGTFGLFMGIGSGIR 70 (75)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccchhhee--ecCChhHHHHHHh----HHHHhccchhhhhhhhhhhee
Confidence 44455555555555555555555444321 1246666676654 444444555555555544444
No 30
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.78 E-value=1.3e+02 Score=22.40 Aligned_cols=29 Identities=34% Similarity=0.607 Sum_probs=19.7
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHhhh
Q 027521 75 TFDCTMVYLRQKEDPWNSIIAGAATGGFLSM 105 (222)
Q Consensus 75 ~~ec~l~~~R~KdD~~NsiiAG~~TGall~~ 105 (222)
..+++-+++| +-||-++.-++..|.++++
T Consensus 61 ~~~~~~~~V~--e~P~~svgiAagvG~llG~ 89 (94)
T PF05957_consen 61 AAEQTEDYVR--ENPWQSVGIAAGVGFLLGL 89 (94)
T ss_pred HHHHHHHHHH--HChHHHHHHHHHHHHHHHH
Confidence 3455555555 6789888877777777664
No 31
>COG3619 Predicted membrane protein [Function unknown]
Probab=20.35 E-value=5.1e+02 Score=23.09 Aligned_cols=52 Identities=31% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCh-----------hHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 027521 68 VWGGLFSTFDCTMVYLRQKEDP-----------WNSIIAGAATGGFLSMRQGLGSASRSALFG 119 (222)
Q Consensus 68 ~~G~lfs~~ec~l~~~R~KdD~-----------~NsiiAG~~TGall~~r~G~ka~~~sAl~G 119 (222)
+-|-+-++.....++++.||+. |-+.+.|++.|+++...-|.+++..+++.-
T Consensus 145 ~TGnl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~i 207 (226)
T COG3619 145 VTGNLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAALI 207 (226)
T ss_pred hhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455566666777777776543 445667777777777777777654444443
No 32
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=3.3e+02 Score=24.47 Aligned_cols=53 Identities=19% Similarity=-0.018 Sum_probs=32.1
Q ss_pred cCChhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027521 86 KEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSA 139 (222)
Q Consensus 86 KdD~~NsiiAG~~TGall~~r~G~ka~~~sAl~Gg~~~aliegag~~~~r~~~~ 139 (222)
..+..|...+|++++.+|+-.++-|- ...+...|.+.++-.-+.-+.+.+...
T Consensus 31 ~~~~l~p~~~GALaa~Llg~K~~rk~-~~k~~k~GglAAlG~laY~aY~N~q~~ 83 (225)
T COG2979 31 LGSLLNPLGGGALAAMLLGNKSARKL-GGKATKLGGLAALGALAYKAYQNYQKG 83 (225)
T ss_pred cccccCcchhHHHHHHHHcCcchHHH-HhhHhhhhhHHHHHHHHHHHHHHHhcc
Confidence 46788999999999999988876433 233344444444333333444555444
Done!